Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr02 99090824
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 99090824
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 317 characters in sequence are not A, C, G, or T
File 303 of 318
Found at i:94889099 original size:37 final size:37
Alignment explanation
Indices: 94889035--94889105 Score: 99
Period size: 37 Copynumber: 1.9 Consensus size: 37
94889025 TTGGCCACAT
**
94889035 CTTTTTTGTTTTATTTTACGTTGACATGATCCACTTC
1 CTTTTTTGTTTTATTTTACGTCAACATGATCCACTTC
*
94889072 CTTTTTTGTTTTATTTTA-GATCAACATGGTCCAC
1 CTTTTTTGTTTTATTTTACG-TCAACATGATCCAC
94889106 ATCATTATGC
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
36 1 0.03
37 29 0.97
ACGTcount: A:0.18, C:0.18, G:0.11, T:0.52
Consensus pattern (37 bp):
CTTTTTTGTTTTATTTTACGTCAACATGATCCACTTC
Found at i:94902118 original size:35 final size:35
Alignment explanation
Indices: 94902078--94902160 Score: 103
Period size: 35 Copynumber: 2.4 Consensus size: 35
94902068 TTTCAATAGC
* * *
94902078 CATACTTTACATGCAAATCAAAATCTGTGTAATGG
1 CATACTTAACATGCAAATCAAAACCGGTGTAATGG
* * *
94902113 CATACTTAACATGTAGATCACAACCGGTGTAATGG
1 CATACTTAACATGCAAATCAAAACCGGTGTAATGG
*
94902148 CATGCTTAACATG
1 CATACTTAACATG
94902161 TGAATCAGAA
Statistics
Matches: 41, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
35 41 1.00
ACGTcount: A:0.35, C:0.19, G:0.17, T:0.29
Consensus pattern (35 bp):
CATACTTAACATGCAAATCAAAACCGGTGTAATGG
Found at i:94906857 original size:93 final size:93
Alignment explanation
Indices: 94906745--94906916 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
94906735 CGCCCATAAG
* *
94906745 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
94906810 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
94906838 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
94906903 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
94906917 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:94906913 original size:46 final size:46
Alignment explanation
Indices: 94906738--94906913 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
94906728 TGTAACCCGC
* * *
94906738 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
94906784 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
94906834 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
94906877 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
94906914 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:94908481 original size:19 final size:19
Alignment explanation
Indices: 94908457--94908500 Score: 88
Period size: 19 Copynumber: 2.3 Consensus size: 19
94908447 AGCCTATGAA
94908457 CTTACTAAGTTTCATTAAG
1 CTTACTAAGTTTCATTAAG
94908476 CTTACTAAGTTTCATTAAG
1 CTTACTAAGTTTCATTAAG
94908495 CTTACT
1 CTTACT
94908501 TGTGTTGTTC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.30, C:0.18, G:0.09, T:0.43
Consensus pattern (19 bp):
CTTACTAAGTTTCATTAAG
Found at i:94916886 original size:5 final size:5
Alignment explanation
Indices: 94916878--94916902 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
94916868 AGTAATTCAA
94916878 TTAAT TTAAT TTAAT TTAAT TTAAT
1 TTAAT TTAAT TTAAT TTAAT TTAAT
94916903 CAACCTTAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (5 bp):
TTAAT
Found at i:94919164 original size:20 final size:20
Alignment explanation
Indices: 94919114--94919153 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
94919104 TTGCCCATCC
94919114 AACACACCAAATTATGAACA
1 AACACACCAAATTATGAACA
94919134 AACACACCAAATTATGAACA
1 AACACACCAAATTATGAACA
94919154 GTGTCACCAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.55, C:0.25, G:0.05, T:0.15
Consensus pattern (20 bp):
AACACACCAAATTATGAACA
Found at i:94920811 original size:2 final size:2
Alignment explanation
Indices: 94920768--94920801 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
94920758 AAAACGATCA
94920768 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -T AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
94920802 AAAGTATATA
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 30 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:94920884 original size:23 final size:25
Alignment explanation
Indices: 94920855--94920915 Score: 72
Period size: 23 Copynumber: 2.5 Consensus size: 25
94920845 ATCAGTAATG
* *
94920855 TATATAAAATAATTCAAATAA-G-A
1 TATATAAAATAATTAAAAGAATGAA
*
94920878 TATATAAAAAAATTAAAAGAATGAA
1 TATATAAAATAATTAAAAGAATGAA
94920903 TAATATAAAATAA
1 T-ATATAAAATAA
94920916 CTTACAATCA
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
23 18 0.58
24 1 0.03
25 2 0.06
26 10 0.32
ACGTcount: A:0.66, C:0.02, G:0.05, T:0.28
Consensus pattern (25 bp):
TATATAAAATAATTAAAAGAATGAA
Found at i:94920940 original size:3 final size:3
Alignment explanation
Indices: 94920928--94921101 Score: 81
Period size: 3 Copynumber: 58.3 Consensus size: 3
94920918 TACAATCACG
* * *
94920928 AAT AAT -AT AAT AAT AA- AAT AGT AAT AAT AAC AAT GAAT -AT GAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT -AAT AAT AAT
* * * * * * * * *
94920971 AAT AGT AAA AAA AAT ATT AGT AAG AAT AAT ACT AAG GAT AAAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT -AAT AAT
* * * *
94921017 GAT AAT AA- AAT AAGGG AAT AAT AAT AAC AAC AAT -AT AAAT AAT AAT
1 AAT AAT AAT AAT AA--T AAT AAT AAT AAT AAT AAT AAT -AAT AAT AAT
* * * *
94921063 AAT AAA AAC AAT AAT AGT AAT AA- AAT AAT AAA AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
94921102 GTATTAATAG
Statistics
Matches: 127, Mismatches: 33, Indels: 22
0.70 0.18 0.12
Matches are distributed among these distances:
2 12 0.09
3 106 0.83
4 7 0.06
5 2 0.02
ACGTcount: A:0.64, C:0.03, G:0.07, T:0.26
Consensus pattern (3 bp):
AAT
Found at i:94921065 original size:24 final size:26
Alignment explanation
Indices: 94921033--94921101 Score: 90
Period size: 24 Copynumber: 2.7 Consensus size: 26
94921023 AAAATAAGGG
*
94921033 AATAATAATAACAACAAT-ATA-AAT
1 AATAATAATAAAAACAATAATAGAAT
94921057 AATAATAATAAAAACAATAATAGTAAT
1 AATAATAATAAAAACAATAATAG-AAT
*
94921084 AA-AATAATAAAAATAATA
1 AATAATAATAAAAACAATA
94921102 GTATTAATAG
Statistics
Matches: 40, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
24 17 0.43
25 3 0.08
26 15 0.38
27 5 0.12
ACGTcount: A:0.70, C:0.04, G:0.01, T:0.25
Consensus pattern (26 bp):
AATAATAATAAAAACAATAATAGAAT
Found at i:94925475 original size:20 final size:21
Alignment explanation
Indices: 94925438--94925481 Score: 72
Period size: 21 Copynumber: 2.1 Consensus size: 21
94925428 AAACATAATA
94925438 ATAGTATGAAAAAGTATATAC
1 ATAGTATGAAAAAGTATATAC
*
94925459 ATAGTATTAAAAA-TATATAC
1 ATAGTATGAAAAAGTATATAC
94925479 ATA
1 ATA
94925482 ATATAGTTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
20 10 0.45
21 12 0.55
ACGTcount: A:0.55, C:0.05, G:0.09, T:0.32
Consensus pattern (21 bp):
ATAGTATGAAAAAGTATATAC
Found at i:94925493 original size:26 final size:25
Alignment explanation
Indices: 94925401--94925537 Score: 101
Period size: 26 Copynumber: 5.6 Consensus size: 25
94925391 TAATGTTACC
* *
94925401 TATATACATACGTATA-TATT-AAAC
1 TATATACATA-ATATAGTATTAAAAA
* *
94925425 TATAAACATAATAATAGTATGAAAAA
1 TATATACATAAT-ATAGTATTAAAAA
94925451 GTATATAC-----ATAGTATTAAAAA
1 -TATATACATAATATAGTATTAAAAA
94925472 TATATACATAATATAGTTATTAAAAA
1 TATATACATAATATAG-TATTAAAAA
* * *
94925498 TATATACATAAAATAATATGTAAATA
1 TATATACATAATATAGTAT-TAAAAA
*
94925524 TATATATAT-ATATA
1 TATATACATAATATA
94925538 AATAATATAG
Statistics
Matches: 91, Mismatches: 11, Indels: 21
0.74 0.09 0.17
Matches are distributed among these distances:
20 7 0.08
21 12 0.13
23 1 0.01
24 12 0.13
25 14 0.15
26 39 0.43
27 6 0.07
ACGTcount: A:0.54, C:0.05, G:0.05, T:0.36
Consensus pattern (25 bp):
TATATACATAATATAGTATTAAAAA
Found at i:94925497 original size:47 final size:49
Alignment explanation
Indices: 94925401--94925507 Score: 132
Period size: 47 Copynumber: 2.2 Consensus size: 49
94925391 TAATGTTACC
*
94925401 TATATACATACGTATATATTAAACTATAAACATAATAATAGTATGAAAAA
1 TATATACATACGTATATA-TAAAATATAAACATAATAATAGTATGAAAAA
* *
94925451 GTATATACATA-GTAT-TA-AAAATATATACATAAT-ATAGTTATTAAAAA
1 -TATATACATACGTATATATAAAATATAAACATAATAATAG-TATGAAAAA
94925498 TATATACATA
1 TATATACATA
94925508 AAATAATATG
Statistics
Matches: 52, Mismatches: 3, Indels: 7
0.84 0.05 0.11
Matches are distributed among these distances:
46 14 0.27
47 22 0.42
49 2 0.04
50 4 0.08
51 10 0.19
ACGTcount: A:0.53, C:0.07, G:0.06, T:0.35
Consensus pattern (49 bp):
TATATACATACGTATATATAAAATATAAACATAATAATAGTATGAAAAA
Found at i:94925578 original size:33 final size:32
Alignment explanation
Indices: 94925497--94925599 Score: 109
Period size: 33 Copynumber: 3.2 Consensus size: 32
94925487 GTTATTAAAA
* * *
94925497 ATATATACATAAA-ATAATATGTAAATATATAT
1 ATATATATATAAATATAATAT-TAAAAATATAC
* *
94925529 ATATATATAAATAATATAGTATTAAAAATATAC
1 ATATATATATA-AATATAATATTAAAAATATAC
* *
94925562 ATGATATATATAAATATAATATTAAAAAGATAT
1 AT-ATATATATAAATATAATATTAAAAATATAC
94925595 ATATA
1 ATATA
94925600 CGTAATATAA
Statistics
Matches: 59, Mismatches: 9, Indels: 6
0.80 0.12 0.08
Matches are distributed among these distances:
32 12 0.20
33 33 0.56
34 14 0.24
ACGTcount: A:0.57, C:0.02, G:0.04, T:0.37
Consensus pattern (32 bp):
ATATATATATAAATATAATATTAAAAATATAC
Found at i:94925595 original size:60 final size:59
Alignment explanation
Indices: 94925463--94925597 Score: 134
Period size: 60 Copynumber: 2.3 Consensus size: 59
94925453 ATATACATAG
* * *
94925463 TATT-AAAAATATATACATAATATAGTTATTAAAAATATATACATAAAATAATATGTAA
1 TATTAAAAAATATATAAATAATATAGTTATTAAAAATATACACATAAAATAATATATAA
* * * *
94925521 -ATATATATATATATATAAATAATATAG-TATTAAAAATATACATGATATATATAA-ATATAA
1 TAT-TA-AAAAATATATAAATAATATAGTTATTAAAAATATACA-CATA-AAATAATATATAA
94925581 TATTAAAAAGATATATA
1 TATTAAAAA-ATATATA
94925598 TACGTAATAT
Statistics
Matches: 61, Mismatches: 9, Indels: 12
0.74 0.11 0.15
Matches are distributed among these distances:
57 2 0.03
58 1 0.02
59 16 0.26
60 35 0.57
61 7 0.11
ACGTcount: A:0.57, C:0.02, G:0.04, T:0.37
Consensus pattern (59 bp):
TATTAAAAAATATATAAATAATATAGTTATTAAAAATATACACATAAAATAATATATAA
Found at i:94925605 original size:24 final size:22
Alignment explanation
Indices: 94925577--94925652 Score: 64
Period size: 24 Copynumber: 3.3 Consensus size: 22
94925567 ATATATAAAT
94925577 ATAATATTAAAAAGATATATATAC
1 ATAATATTAAAAA-A-ATATATAC
* *
94925601 GTAATA-TAAAAAAATGTATAC
1 ATAATATTAAAAAAATATATAC
** *
94925622 ATAATATAGTATTAAAATATTTAC
1 ATAATAT--TAAAAAAATATATAC
94925646 ATAATAT
1 ATAATAT
94925653 ATACATATTA
Statistics
Matches: 42, Mismatches: 7, Indels: 6
0.76 0.13 0.11
Matches are distributed among these distances:
21 12 0.29
22 1 0.02
23 6 0.14
24 23 0.55
ACGTcount: A:0.55, C:0.04, G:0.05, T:0.36
Consensus pattern (22 bp):
ATAATATTAAAAAAATATATAC
Found at i:94925626 original size:21 final size:23
Alignment explanation
Indices: 94925567--94925629 Score: 67
Period size: 21 Copynumber: 2.8 Consensus size: 23
94925557 TATACATGAT
* *
94925567 ATATATAAATATAATATTAAAAAG
1 ATATATATACATAATA-TAAAAAG
*
94925591 ATATATATACGTAATATAAAAA-
1 ATATATATACATAATATAAAAAG
*
94925613 A-ATGTATACATAATATA
1 ATATATATACATAATATA
94925630 GTATTAAAAT
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
21 14 0.41
22 1 0.03
23 6 0.18
24 13 0.38
ACGTcount: A:0.59, C:0.03, G:0.05, T:0.33
Consensus pattern (23 bp):
ATATATATACATAATATAAAAAG
Found at i:94925986 original size:3 final size:3
Alignment explanation
Indices: 94925960--94926037 Score: 52
Period size: 3 Copynumber: 26.0 Consensus size: 3
94925950 AAAATAATTC
* * * * * *
94925960 TAA TAA TAG TAA AAA T-A TAC TAA TAA TAA TGA TAA TAA TGA TAA TAG
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* *
94926007 TAA -ATA TAA TAA TAAA TAA TAT TAA AAA TAA
1 TAA TA-A TAA TAA T-AA TAA TAA TAA TAA TAA
94926038 AAAATGGTAA
Statistics
Matches: 55, Mismatches: 16, Indels: 8
0.70 0.20 0.10
Matches are distributed among these distances:
2 3 0.05
3 48 0.87
4 4 0.07
ACGTcount: A:0.62, C:0.01, G:0.05, T:0.32
Consensus pattern (3 bp):
TAA
Found at i:94927350 original size:20 final size:20
Alignment explanation
Indices: 94927303--94927350 Score: 87
Period size: 20 Copynumber: 2.4 Consensus size: 20
94927293 ACTGACAAAA
*
94927303 CAGTCACCTAGGTTTCATTT
1 CAGTCACTTAGGTTTCATTT
94927323 CAGTCACTTAGGTTTCATTT
1 CAGTCACTTAGGTTTCATTT
94927343 CAGTCACT
1 CAGTCACT
94927351 CAACTTTGGA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.21, C:0.25, G:0.15, T:0.40
Consensus pattern (20 bp):
CAGTCACTTAGGTTTCATTT
Found at i:94929101 original size:136 final size:137
Alignment explanation
Indices: 94928856--94929141 Score: 547
Period size: 136 Copynumber: 2.1 Consensus size: 137
94928846 TATTGGGCCT
**
94928856 AAGCCCATTCAGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
94928921 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
94928986 CATATGC
131 CATATGC
94928993 AAGCCCATTTGGGTAACAGTGGTACTGGG-CAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
94929057 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
94929122 CATATGC
131 CATATGC
94929129 AAGCCCATTTGGG
1 AAGCCCATTTGGG
94929142 GAGACTACTC
Statistics
Matches: 147, Mismatches: 2, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
136 120 0.82
137 27 0.18
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.24
Consensus pattern (137 bp):
AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
CATATGC
Found at i:94930958 original size:26 final size:26
Alignment explanation
Indices: 94930922--94931057 Score: 236
Period size: 26 Copynumber: 5.2 Consensus size: 26
94930912 CATGATATTC
94930922 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
94930948 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
94930974 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
94931000 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
94931026 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
94931052 TTATCA
1 TTATCA
94931058 ATTTGTATCA
Statistics
Matches: 104, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 104 1.00
ACGTcount: A:0.37, C:0.25, G:0.05, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:94934993 original size:137 final size:137
Alignment explanation
Indices: 94934747--94935033 Score: 529
Period size: 137 Copynumber: 2.1 Consensus size: 137
94934737 TATTGGGCCT
** *
94934747 AAGCCCATTCAGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCAAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
94934812 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
94934877 CATATGC
131 CATATGC
94934884 AAGCCCATTTGGGTAACAGTGGTACTGGGCAAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCAAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
* *
94934949 AGCCCCTTATTCAGATAATAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATTAGTAAA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
94935014 CATATGC
131 CATATGC
94935021 AAGCCCATTTGGG
1 AAGCCCATTTGGG
94935034 GAGACTACTC
Statistics
Matches: 145, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
137 145 1.00
ACGTcount: A:0.32, C:0.24, G:0.19, T:0.25
Consensus pattern (137 bp):
AAGCCCATTTGGGTAACAGTGGTACTGGGCAAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
CATATGC
Found at i:94936848 original size:26 final size:26
Alignment explanation
Indices: 94936810--94936919 Score: 202
Period size: 26 Copynumber: 4.2 Consensus size: 26
94936800 CATGATATTC
*
94936810 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGGAACATTTACCTAACCCA
94936836 TTATCATGGAACATTTACCTAACCCA
1 TTATCATGGAACATTTACCTAACCCA
94936862 TTATCATGGAACATTTACCTAACCCA
1 TTATCATGGAACATTTACCTAACCCA
*
94936888 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCCA
94936914 TTATCA
1 TTATCA
94936920 ATTTGTATCA
Statistics
Matches: 82, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 82 1.00
ACGTcount: A:0.35, C:0.25, G:0.06, T:0.33
Consensus pattern (26 bp):
TTATCATGGAACATTTACCTAACCCA
Found at i:94937307 original size:30 final size:31
Alignment explanation
Indices: 94937240--94937310 Score: 92
Period size: 31 Copynumber: 2.3 Consensus size: 31
94937230 AAACTGTTAA
* *
94937240 TTAGTGACTGTTTTGTCACTTTTTTATAATG
1 TTAGTGACTGTTTTGTCACTTTTTCATAAAG
*
94937271 TTAGTGACTGTTTTGTTA-TTTTTCA-AAAG
1 TTAGTGACTGTTTTGTCACTTTTTCATAAAG
94937300 TTGAGTGACTG
1 TT-AGTGACTG
94937311 AAATGAAATT
Statistics
Matches: 36, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
29 5 0.14
30 14 0.39
31 17 0.47
ACGTcount: A:0.21, C:0.08, G:0.20, T:0.51
Consensus pattern (31 bp):
TTAGTGACTGTTTTGTCACTTTTTCATAAAG
Found at i:94937995 original size:17 final size:17
Alignment explanation
Indices: 94937973--94938010 Score: 60
Period size: 17 Copynumber: 2.2 Consensus size: 17
94937963 CTTAAAAAAT
94937973 TAAAACAA-AACCAGAAA
1 TAAAACAATAA-CAGAAA
94937990 TAAAACAATAACAGAAA
1 TAAAACAATAACAGAAA
94938007 TAAA
1 TAAA
94938011 TCTAAACAGG
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
17 18 0.90
18 2 0.10
ACGTcount: A:0.71, C:0.13, G:0.05, T:0.11
Consensus pattern (17 bp):
TAAAACAATAACAGAAA
Found at i:94945917 original size:18 final size:19
Alignment explanation
Indices: 94945894--94945929 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
94945884 AACAGCAGCG
94945894 ATAATGAGATTA-AATATT
1 ATAATGAGATTATAATATT
*
94945912 ATAATGATATTATAATAT
1 ATAATGAGATTATAATAT
94945930 AAGGCAAAAG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 11 0.69
19 5 0.31
ACGTcount: A:0.50, C:0.00, G:0.08, T:0.42
Consensus pattern (19 bp):
ATAATGAGATTATAATATT
Found at i:94949916 original size:18 final size:17
Alignment explanation
Indices: 94949893--94950007 Score: 53
Period size: 17 Copynumber: 6.9 Consensus size: 17
94949883 ATAATGCTAC
* *
94949893 AATAACCATAAACATAGT
1 AATAACAATAAA-ATAAT
*
94949911 AATAACGATTAAAATAAT
1 AATAAC-AATAAAATAAT
94949929 AATAACAAT--AATAA-
1 AATAACAATAAAATAAT
* * *
94949943 AAT-AGAAGATAATAAT
1 AATAACAATAAAATAAT
* * *
94949959 AATAA-TATATTAATAAA
1 AATAACAATA-AAATAAT
*
94949976 AATAATAATATAAA-AAT
1 AATAACAATA-AAATAAT
*
94949993 AATAAAAATAAAATA
1 AATAACAATAAAATA
94950008 TGTTTCTAAT
Statistics
Matches: 76, Mismatches: 13, Indels: 17
0.72 0.12 0.16
Matches are distributed among these distances:
13 3 0.04
14 3 0.04
15 10 0.13
16 8 0.11
17 26 0.34
18 22 0.29
19 4 0.05
ACGTcount: A:0.66, C:0.04, G:0.03, T:0.26
Consensus pattern (17 bp):
AATAACAATAAAATAAT
Found at i:94949931 original size:3 final size:3
Alignment explanation
Indices: 94949923--94950119 Score: 124
Period size: 3 Copynumber: 65.7 Consensus size: 3
94949913 TAACGATTAA
*
94949923 AAT AAT AAT AAC AAT AAT AA- AAT AGA- AGAT AAT AAT AAT AAT -AT
1 AAT AAT AAT AAT AAT AAT AAT AAT A-AT A-AT AAT AAT AAT AAT AAT
* * * * **
94949967 ATT AAT AAA AAT AAT AAT -AT AAA AAT AAT AAA AAT AA- AAT -AT GTT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
** * *
94950012 TCT AAT AAT AAT AAT AAAT CAAT GAT AAT AAAT ATAT ACAA AAT AAT
1 AAT AAT AAT AAT AAT -AAT -AAT AAT AAT -AAT A-AT A-AT AAT AAT
* *
94950059 AAT AAC AGT AAT AA- AAT AAGT -AT AAT -AT AAT ATAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AA-T AAT AAT AAT AAT A-AT AAT AAT AAT
*
94950103 AAT AAT AAT AAA AAT AA
1 AAT AAT AAT AAT AAT AA
94950120 CACTCTCTCC
Statistics
Matches: 152, Mismatches: 27, Indels: 30
0.73 0.13 0.14
Matches are distributed among these distances:
2 15 0.10
3 117 0.77
4 20 0.13
ACGTcount: A:0.64, C:0.03, G:0.03, T:0.30
Consensus pattern (3 bp):
AAT
Found at i:94949988 original size:14 final size:14
Alignment explanation
Indices: 94949923--94949997 Score: 57
Period size: 14 Copynumber: 5.4 Consensus size: 14
94949913 TAACGATTAA
*
94949923 AATAATAATAACAAT
1 AATAAT-ATAAAAAT
* *
94949938 AATAAAATAGAAGAT
1 AATAATATA-AAAAT
*
94949953 AAT-A-ATAATAAT
1 AATAATATAAAAAT
*
94949965 -ATATTAATAAAAAT
1 AATAAT-ATAAAAAT
94949979 AATAATATAAAAAT
1 AATAATATAAAAAT
94949993 AATAA
1 AATAA
94949998 AAATAAAATA
Statistics
Matches: 47, Mismatches: 8, Indels: 11
0.71 0.12 0.17
Matches are distributed among these distances:
11 2 0.04
12 3 0.06
13 3 0.06
14 24 0.51
15 15 0.32
ACGTcount: A:0.68, C:0.01, G:0.03, T:0.28
Consensus pattern (14 bp):
AATAATATAAAAAT
Found at i:94950088 original size:11 final size:10
Alignment explanation
Indices: 94950069--94950119 Score: 50
Period size: 11 Copynumber: 4.9 Consensus size: 10
94950059 AATAACAGTA
94950069 ATAAAATAAGT
1 ATAAAATAA-T
*
94950080 ATAATATAAT
1 ATAAAATAAT
*
94950090 ATATAATAAT
1 ATAAAATAAT
94950100 AATAATAATAAT
1 -ATAA-AATAAT
94950112 A-AAAATAA
1 ATAAAATAA
94950120 CACTCTCTCC
Statistics
Matches: 34, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
9 5 0.15
10 11 0.32
11 12 0.35
12 6 0.18
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.31
Consensus pattern (10 bp):
ATAAAATAAT
Found at i:94950883 original size:16 final size:17
Alignment explanation
Indices: 94950851--94950883 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
94950841 TTTATAAGTA
*
94950851 TATATCAATCGTTTCAT
1 TATATCAATCATTTCAT
94950868 TATATCAAT-ATTTCAT
1 TATATCAATCATTTCAT
94950884 GTTTCATCAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.33, C:0.15, G:0.03, T:0.48
Consensus pattern (17 bp):
TATATCAATCATTTCAT
Found at i:94951326 original size:92 final size:92
Alignment explanation
Indices: 94951169--94951441 Score: 402
Period size: 92 Copynumber: 3.0 Consensus size: 92
94951159 TTTGACATGA
* * * *
94951169 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTCTGTCATGTTGCCATGGTATCTTTCAAC
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCCTGTCATGTTGCCATGGTATCTTTCAAC
* *
94951234 CATGGTCTTATTCTTTTCATGTCACGT
66 CATGGTCTTATTCGTTTCATATCACGT
* *
94951261 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCCCGTCATGTTGCCATGGTATCTTTCAAC
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCCTGTCATGTTGCCATGGTATCTTTCAAC
94951326 CATGGTCTTATTCGTTTCATATCACGT
66 CATGGTCTTATTCGTTTCATATCACGT
* * * * *
94951353 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTTAAC
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCCTGTCATGTTGCCATGGTATCTTTCAAC
** *
94951418 CATGGTCTTACACATTTCATATCA
66 CATGGTCTTATTCGTTTCATATCA
94951442 GAGAGCACAC
Statistics
Matches: 163, Mismatches: 18, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
92 163 1.00
ACGTcount: A:0.20, C:0.24, G:0.15, T:0.41
Consensus pattern (92 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCCTGTCATGTTGCCATGGTATCTTTCAAC
CATGGTCTTATTCGTTTCATATCACGT
Found at i:94951442 original size:46 final size:46
Alignment explanation
Indices: 94951169--94951441 Score: 359
Period size: 46 Copynumber: 5.9 Consensus size: 46
94951159 TTTGACATGA
* * * * *
94951169 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCA-TTTCATATCACGT
* * *
94951215 TGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCACGT
* *** *
94951261 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCCCGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCACGT
* *
94951307 TGCCATGGTATCTTTCAACCATGGTCTTATTCGTTTCATATCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCACGT
* *
94951353 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCACGT
* *
94951399 TGCCATGGTATCTTTTAACCATGGTCTTACACATTTCATATCA
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCA
94951442 GAGAGCACAC
Statistics
Matches: 206, Mismatches: 20, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
45 4 0.02
46 202 0.98
ACGTcount: A:0.20, C:0.24, G:0.15, T:0.41
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCACGT
Found at i:94954259 original size:24 final size:24
Alignment explanation
Indices: 94954227--94954276 Score: 91
Period size: 24 Copynumber: 2.1 Consensus size: 24
94954217 TCTTTTTGTA
*
94954227 GGCAAGTGGGGTGATGGAGTTAGT
1 GGCAAGTGGGGTAATGGAGTTAGT
94954251 GGCAAGTGGGGTAATGGAGTTAGT
1 GGCAAGTGGGGTAATGGAGTTAGT
94954275 GG
1 GG
94954277 GATGGTTTAG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.22, C:0.04, G:0.50, T:0.24
Consensus pattern (24 bp):
GGCAAGTGGGGTAATGGAGTTAGT
Found at i:94954291 original size:30 final size:30
Alignment explanation
Indices: 94954255--94954322 Score: 100
Period size: 30 Copynumber: 2.3 Consensus size: 30
94954245 GTTAGTGGCA
*
94954255 AGTGGGGTAATGGAGTTAGTGGGATGGTTT
1 AGTGGGGTAATGGAGTTAGTGGGATGATTT
* *
94954285 AGTGGGGTGATGGAGTTAGTGGGGTGATTT
1 AGTGGGGTAATGGAGTTAGTGGGATGATTT
*
94954315 AGTAGGGT
1 AGTGGGGT
94954323 GTGGGGGTGA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 34 1.00
ACGTcount: A:0.19, C:0.00, G:0.49, T:0.32
Consensus pattern (30 bp):
AGTGGGGTAATGGAGTTAGTGGGATGATTT
Found at i:94954310 original size:17 final size:17
Alignment explanation
Indices: 94954255--94954312 Score: 70
Period size: 17 Copynumber: 3.6 Consensus size: 17
94954245 GTTAGTGGCA
*
94954255 AGTGGGGTAATGGAGTT
1 AGTGGGGTGATGGAGTT
*
94954272 AGT--GG-GATGG-TTT
1 AGTGGGGTGATGGAGTT
94954285 AGTGGGGTGATGGAGTT
1 AGTGGGGTGATGGAGTT
94954302 AGTGGGGTGAT
1 AGTGGGGTGAT
94954313 TTAGTAGGGT
Statistics
Matches: 34, Mismatches: 3, Indels: 8
0.76 0.07 0.18
Matches are distributed among these distances:
13 5 0.15
14 4 0.12
15 4 0.12
16 5 0.15
17 16 0.47
ACGTcount: A:0.19, C:0.00, G:0.50, T:0.31
Consensus pattern (17 bp):
AGTGGGGTGATGGAGTT
Found at i:94954841 original size:133 final size:134
Alignment explanation
Indices: 94954639--94954918 Score: 386
Period size: 133 Copynumber: 2.1 Consensus size: 134
94954629 CTGCTCAATA
* * *
94954639 AAGATAAGATCTGGTATGTTTAGCCTGCTCCACTCCTGCTCAGTGAAGATAAGGCTGATGATTGG
1 AAGATAAGATCTAGTA-GTTTAGCCTGCTCCACTCCTGCTCAGTGAAGATAAGGCTGATGACTGA
* * *
94954704 AATCTACTCCATTGCCGATACATGGAGATAAGA-TT-CATCAAAATTTGATCTGCTCCGCTCCTA
65 AATCTACTCCATTACCGATACATGGAGATAAGACTTGC--CAAAATCTGATCTGCTCCACTCCTA
94954767 CTCAGCG
128 CTCAGCG
* *
94954774 AAGATAAGATCTAGTA-TTTAGCCTGCTCCACTCCTGCTCAGTGAAGATAAGGCTGGTGGCTGAA
1 AAGATAAGATCTAGTAGTTTAGCCTGCTCCACTCCTGCTCAGTGAAGATAAGGCTGATGACTGAA
* * * * *
94954838 ATCTGCTCCATTACCGTTACATGGAGATAAGACTTGCCAAAATCTGATTTGCTTCACTCCTGCTC
66 ATCTACTCCATTACCGATACATGGAGATAAGACTTGCCAAAATCTGATCTGCTCCACTCCTACTC
*
94954903 AGTG
131 AGCG
94954907 AAGATAAGATCT
1 AAGATAAGATCT
94954919 GTCAAAATTT
Statistics
Matches: 129, Mismatches: 14, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
133 111 0.86
134 2 0.02
135 16 0.12
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.29
Consensus pattern (134 bp):
AAGATAAGATCTAGTAGTTTAGCCTGCTCCACTCCTGCTCAGTGAAGATAAGGCTGATGACTGAA
ATCTACTCCATTACCGATACATGGAGATAAGACTTGCCAAAATCTGATCTGCTCCACTCCTACTC
AGCG
Found at i:94954942 original size:46 final size:45
Alignment explanation
Indices: 94954862--94954951 Score: 103
Period size: 46 Copynumber: 2.0 Consensus size: 45
94954852 CGTTACATGG
* *
94954862 AGATAAGACTTGCCAAAATCTGATTTGCTTCACTCCTGCTCAGTGA
1 AGATAAGACTTGCCAAAATCTGATCTGCTTCACTCCAGC-CAGTGA
* *
94954908 AGATAAGA-TCTGTCAAAATTTGATCTG-TTCCACTCCAGCCAGTG
1 AGATAAGACT-TGCCAAAATCTGATCTGCTT-CACTCCAGCCAGTG
94954952 GGATGAGATC
Statistics
Matches: 38, Mismatches: 4, Indels: 5
0.81 0.09 0.11
Matches are distributed among these distances:
45 8 0.21
46 30 0.79
ACGTcount: A:0.29, C:0.23, G:0.18, T:0.30
Consensus pattern (45 bp):
AGATAAGACTTGCCAAAATCTGATCTGCTTCACTCCAGCCAGTGA
Found at i:94955065 original size:85 final size:85
Alignment explanation
Indices: 94954957--94955772 Score: 1090
Period size: 85 Copynumber: 9.6 Consensus size: 85
94954947 CAGTGGGATG
* * * * * *
94954957 AGATCTG-CAATTTTAGCCTGTTACCCTACTGCTGAGGGGATTAAGACGAGTCTTCGACCTACTT
1 AGATCTGTAAATTTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCGAGTCTTCGACCTGCTC
* *
94955021 CACCACTGCTTGGAAAG-CC
66 CACCACTGCTCGGAGAGCCC
* * * *
94955040 AGGATTTGTAAATTTTAGCCTGTTACCCTACTACTTAGGGGGTTAAAG-TAGATCTTCGACCTGC
1 A-GATCTGTAAATTTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCGAG-TCTTCGACCTGC
* *
94955104 TCCACCACTGCTCGGCGAGCCT
64 TCCACCACTGCTCGGAGAGCCC
* * * *
94955126 AAATCTGTAAATTTTAGCCTGTTACCCTACTGCTTA-AGGGTTAATGCGAGTATTCGACCTGCTC
1 AGATCTGTAAATTTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCGAGTCTTCGACCTGCTC
*
94955190 CGCCACTGCTC-GATGAGCCC
66 CACCACTGCTCGGA-GAGCCC
* * * * * *
94955210 AGATCTGTAAATTTTAGTCTGCTACCCTACTGCTTAGGGGGTTAAGGCGTATATCTTTGATCTAC
1 AGATCTGTAAATTTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCG-A-GTCTTCGACCTGC
**
94955275 TCTGCCACTGCTC-GACGAGCCC
64 TCCACCACTGCTCGGA-GAGCCC
*
94955297 AGATCTGTAAATTTTAGCCTGTTACCCTACTGCTTAGGAGGTTAAGGCGAGTCTTCGACCTGCTC
1 AGATCTGTAAATTTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCGAGTCTTCGACCTGCTC
*
94955362 CACCACTGCTCGGGGAGCCC
66 CACCACTGCTCGGAGAGCCC
* *
94955382 AGATCTATAAATTTTAGCATGTTACCCTACTGCTTAGGGGGTTAAGGCGAGTCTTCGACCTGCTC
1 AGATCTGTAAATTTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCGAGTCTTCGACCTGCTC
*
94955447 CACCACTGCTCGGCGAGCCC
66 CACCACTGCTCGGAGAGCCC
* *
94955467 AGATCTGTAAATTTTAGCCCGTTACCCTACTGCTTAGGGGGTTAAGGCGAGTCTTCGACCTACTC
1 AGATCTGTAAATTTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCGAGTCTTCGACCTGCTC
*
94955532 CACCACTGCTCGGCGAGCCC
66 CACCACTGCTCGGAGAGCCC
*
94955552 AGATCTGTAAATTTTAGCCTGTTAACCTACTGCTTAGGGGGTTAAGGCGAGTCTTCGACCTGCTC
1 AGATCTGTAAATTTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCGAGTCTTCGACCTGCTC
*
94955617 TACCACTGCTC-GACGAGCCC
66 CACCACTGCTCGGA-GAGCCC
* * * * *
94955637 AGATCTATAAATTTTAGCCTGTTACCCTACTGTTTAGGGGGTTAAGGCGTGTATCTTTGATCTGC
1 AGATCTGTAAATTTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCGAG--TCTTCGACCTGC
* *
94955702 TCCACTATTGCTCGGTA-AGCCC
64 TCCACCACTGCTCGG-AGAGCCC
94955724 AGATCTGTAAATTTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCG
1 AGATCTGTAAATTTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCG
94955773 TGTATCTTTG
Statistics
Matches: 648, Mismatches: 70, Indels: 26
0.87 0.09 0.03
Matches are distributed among these distances:
83 2 0.00
84 77 0.12
85 416 0.64
86 5 0.01
87 146 0.23
88 1 0.00
89 1 0.00
ACGTcount: A:0.21, C:0.26, G:0.23, T:0.30
Consensus pattern (85 bp):
AGATCTGTAAATTTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCGAGTCTTCGACCTGCTC
CACCACTGCTCGGAGAGCCC
Found at i:94955932 original size:84 final size:84
Alignment explanation
Indices: 94955637--94956026 Score: 349
Period size: 84 Copynumber: 4.6 Consensus size: 84
94955627 CGACGAGCCC
* * * *
94955637 AGATCTATAAATTTT-AGCCTGTTACCCTACTGTTTAGGGGGTTAAGGCGTG-TATCTTTGATCT
1 AGATCTGT-AATTTTCAGCCTGTTACCCTACTGATTAGGGGGTTAAGGCTTGCTGTCTTTGATCT
* * * ***
94955700 GCTCCACTATTGCTCGGTAAGCCC
65 GCTCCGCTA---CT-GTTTAGGGG
* * *
94955724 AGATCTGTAAATTTT-AGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCGTG-TATCTTTGATCT
1 AGATCTGT-AATTTTCAGCCTGTTACCCTACTGATTAGGGGGTTAAGGCTTGCTGTCTTTGATCT
* * *
94955787 GCTCCACTATTGCTTAGGGAG
65 GCTCCGCTACTGTTTAGGG-G
* * * * * * **
94955808 ATAAGATCTATAATCTTCAGCTTGTTACCCTA-TTACTTAGGGAGTTAAAGCTTGCTGTCTCCGA
1 ---AGATCTGTAATTTTCAGCCTGTTACCCTACTGA-TTAGGGGGTTAAGGCTTGCTGTCTTTGA
94955872 TCTGCTCCGCTACTGTTTAGGGG
62 TCTGCTCCGCTACTGTTTAGGGG
* * * *
94955895 AGATCTGTATTTTTTAGCCTGTTACCCTACTGATTAGGGGGTTACGGCTTGCTGTCTTTGATCTA
1 AGATCTGTAATTTTCAGCCTGTTACCCTACTGATTAGGGGGTTAAGGCTTGCTGTCTTTGATCTG
94955960 CTCCGCTACTGTTTAGGGG
66 CTCCGCTACTGTTTAGGGG
* * * **
94955979 AGATCTGTATTTTTCAACCTGTTACCCTACTGCTTAGGGTTTTAAGGC
1 AGATCTGTAATTTTCAGCCTGTTACCCTACTGATTAGGGGGTTAAGGC
94956027 CTGTGGATTC
Statistics
Matches: 255, Mismatches: 40, Indels: 19
0.81 0.13 0.06
Matches are distributed among these distances:
83 4 0.02
84 112 0.44
85 2 0.01
86 6 0.02
87 106 0.42
88 25 0.10
ACGTcount: A:0.20, C:0.21, G:0.23, T:0.37
Consensus pattern (84 bp):
AGATCTGTAATTTTCAGCCTGTTACCCTACTGATTAGGGGGTTAAGGCTTGCTGTCTTTGATCTG
CTCCGCTACTGTTTAGGGG
Found at i:94955985 original size:427 final size:423
Alignment explanation
Indices: 94954965--94956026 Score: 1124
Period size: 427 Copynumber: 2.5 Consensus size: 423
94954955 TGAGATCTGC
* * * * * * *
94954965 AATTTTAGCCTGTTACCCTACTGCTGAGGG-GATT-AAGACGAGTCTTCGACCTACTTCACCACT
1 AATTTCAGCATGTTACCCTACTACTTAGGGAG-TTAAAG-CGAGTCTCCGACCTGCTCCACCACT
* ** * * * *
94955028 GCTTGGAAAGCCAGGATTTGTAAATTTTAGCCTGTTACCCTACT-ACTTAGGGGGTTAAAG-TAG
64 GCTAGGCGAG-CA-GATCTGTAAATTTTAGCCCGTTACCCTACTGA-TTAGGGGGTTAAGGCGAG
* * *
94955091 ATCTTCGACCTGCTCCACCACTGCTCGGCGAGCCTAAATCTGTAAATTTTAGCCTGTTACCCTAC
126 -TCTTCGACCTACTCCACCACTGCTAGGCGAG-C-AGATCTGTAAATTTTAGCCTGTTACCCTAC
* * * * *
94955156 TGCTTA-AGGGTTAATGCGAGTATTCGACCTGCTCCGCCACTGCTCGATGAGCCCAGATCTGTAA
188 TGCTTAGGGGGTTAAGGCGAGTATTCGACCTGCTCCACCACTGCTCGACGAGCCCAGATCTATAA
* **
94955220 ATTTTAGTCTGCTACCCTACTGCTTAGGGGGTTAAGGCGTATATCTTTGATCTACTCTGCCACTG
253 ATTTTAGCCTGCTACCCTACTGCTTAGGGGGTTAAGGCGTATATCTTTGATCTACTCCACCACTG
*
94955285 CTCGACGAGCCCAGATCTGTAAATTTTAGCCTGTTACCCTACTGCTTAGGAGGTTAAGGCGAGTC
318 CTCGACAAGCCCAGATCTGTAAATTTTAGCCTGTTACCCTACTGCTTAGGAGGTTAAGGCGAGTC
* * *
94955350 TTCGACCTGCTCCACCACTGCTCGGGGAGCCCAGATCTATA
383 TTCGACCTGCTCCACCACTGCTCAGGGAGACAAGATCTATA
* * * * *
94955391 AATTTTAGCATGTTACCCTACTGCTTAGGGGGTTAAGGCGAGTCTTCGACCTGCTCCACCACTGC
1 AATTTCAGCATGTTACCCTACTACTTAGGGAGTTAAAGCGAGTCTCCGACCTGCTCCACCACTGC
* *
94955456 TCGGCGAGCCCAGATCTGTAAATTTTAGCCCGTTACCCTACTGCTTAGGGGGTTAAGGCGAGTCT
66 TAGGCGAG--CAGATCTGTAAATTTTAGCCCGTTACCCTACTGATTAGGGGGTTAAGGCGAGTCT
* *
94955521 TCGACCTACTCCACCACTGCTCGGCGAGCCCAGATCTGTAAATTTTAGCCTGTTAACCTACTGCT
129 TCGACCTACTCCACCACTGCTAGGCGAG--CAGATCTGTAAATTTTAGCCTGTTACCCTACTGCT
* *
94955586 TAGGGGGTTAAGGCGAGTCTTCGACCTGCTCTACCACTGCTCGACGAGCCCAGATCTATAAATTT
192 TAGGGGGTTAAGGCGAGTATTCGACCTGCTCCACCACTGCTCGACGAGCCCAGATCTATAAATTT
* * * * * *
94955651 TAGCCTGTTACCCTACTGTTTAGGGGGTTAAGGCGTGTATCTTTGATCTGCTCCACTATTGCTCG
257 TAGCCTGCTACCCTACTGCTTAGGGGGTTAAGGCGTATATCTTTGATCTACTCCACCACTGCTCG
** * *
94955716 GTAAGCCCAGATCTGTAAATTTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCGTGTATCTT
322 ACAAGCCCAGATCTGTAAATTTTAGCCTGTTACCCTACTGCTTAGGAGGTTAAGGCGAG--TCTT
* * * * * *
94955781 TGATCTGCTCCACTATTGCTTAGGGAGATAAGATCTAT-
385 CGACCTGCTCCACCACTGCTCAGGGAGACAAGATCTATA
* * * * * *
94955819 AATCTTCAGCTTGTTACCCTATTACTTAGGGAGTTAAAGCTTGCTGTCTCCGATCTGCTCCGCTA
1 AAT-TTCAGCATGTTACCCTACTACTTAGGGAGTTAAAGC--G-AGTCTCCGACCTGCTCCACCA
* ** * *
94955884 CTGTTTAGG-G-G-AGATCTGTATTTTTTAGCCTGTTACCCTACTGATTAGGGGGTTACGGCTTG
62 CTG-CTAGGCGAGCAGATCTGTAAATTTTAGCCCGTTACCCTACTGATTAGGGGGTTAAGGC--G
* * * * * * * *
94955946 CTGTCTTTGATCTACTCCGCTACTGTTTAGG-G-G-AGATCTGT-ATTTTTCAACCTGTTACCCT
124 -AGTCTTCGACCTACTCCACCACTG-CTAGGCGAGCAGATCTGTAAATTTT-AGCCTGTTACCCT
**
94956007 ACTGCTTAGGGTTTTAAGGC
186 ACTGCTTAGGGGGTTAAGGC
94956027 CTGTGGATTC
Statistics
Matches: 541, Mismatches: 76, Indels: 37
0.83 0.12 0.06
Matches are distributed among these distances:
426 170 0.31
427 212 0.39
428 46 0.09
429 63 0.12
430 2 0.00
431 22 0.04
432 23 0.04
433 3 0.01
ACGTcount: A:0.21, C:0.25, G:0.23, T:0.32
Consensus pattern (423 bp):
AATTTCAGCATGTTACCCTACTACTTAGGGAGTTAAAGCGAGTCTCCGACCTGCTCCACCACTGC
TAGGCGAGCAGATCTGTAAATTTTAGCCCGTTACCCTACTGATTAGGGGGTTAAGGCGAGTCTTC
GACCTACTCCACCACTGCTAGGCGAGCAGATCTGTAAATTTTAGCCTGTTACCCTACTGCTTAGG
GGGTTAAGGCGAGTATTCGACCTGCTCCACCACTGCTCGACGAGCCCAGATCTATAAATTTTAGC
CTGCTACCCTACTGCTTAGGGGGTTAAGGCGTATATCTTTGATCTACTCCACCACTGCTCGACAA
GCCCAGATCTGTAAATTTTAGCCTGTTACCCTACTGCTTAGGAGGTTAAGGCGAGTCTTCGACCT
GCTCCACCACTGCTCAGGGAGACAAGATCTATA
Found at i:94958689 original size:8 final size:8
Alignment explanation
Indices: 94958676--94958703 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
94958666 TTATGAATGA
94958676 AATAAAAG
1 AATAAAAG
94958684 AATAAAAG
1 AATAAAAG
94958692 AATAAAAG
1 AATAAAAG
94958700 AATA
1 AATA
94958704 TCTGCTCAGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.75, C:0.00, G:0.11, T:0.14
Consensus pattern (8 bp):
AATAAAAG
Found at i:94962434 original size:18 final size:18
Alignment explanation
Indices: 94962411--94962452 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
94962401 ATAATGCTAC
*
94962411 AATAACCA-TAAACATAGT
1 AATAACCATTAAA-ATAAT
*
94962429 AATAACGATTAAAATAAT
1 AATAACCATTAAAATAAT
94962447 AATAAC
1 AATAAC
94962453 AACAATAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
18 17 0.81
19 4 0.19
ACGTcount: A:0.60, C:0.12, G:0.05, T:0.24
Consensus pattern (18 bp):
AATAACCATTAAAATAAT
Found at i:94962449 original size:3 final size:3
Alignment explanation
Indices: 94962441--94962637 Score: 88
Period size: 3 Copynumber: 65.7 Consensus size: 3
94962431 TAACGATTAA
* * *
94962441 AAT AAT AAT AAC AAC AAT AA- AAT AGA- AGAC AAT AAT AAT AAT -AT
1 AAT AAT AAT AAT AAT AAT AAT AAT A-AT A-AT AAT AAT AAT AAT AAT
* * * * * **
94962485 ATT AAT AAA AAT AAT AAT -AT AAA AAT AAT AAA AAT AAA AAT -AT GTT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
** * *
94962531 TCT AAT AAT AAT AAT AAAT CAAT GAT AAT AAAT ATAT ACAA AAT AAT
1 AAT AAT AAT AAT AAT -AAT -AAT AAT AAT -AAT A-AT A-AT AAT AAT
* *
94962578 AAT AAC AGT AAT AA- AAT AAGT -AT AAT -AT AAT AA- ATAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AA-T AAT AAT AAT AAT AAT A-AT AAT AAT
* *
94962621 AAT AAT ATT AAA AAT AA
1 AAT AAT AAT AAT AAT AA
94962638 CACTCTCCCC
Statistics
Matches: 147, Mismatches: 32, Indels: 30
0.70 0.15 0.14
Matches are distributed among these distances:
2 14 0.10
3 115 0.78
4 18 0.12
ACGTcount: A:0.64, C:0.04, G:0.03, T:0.29
Consensus pattern (3 bp):
AAT
Found at i:94962499 original size:23 final size:24
Alignment explanation
Indices: 94962471--94962637 Score: 78
Period size: 23 Copynumber: 6.8 Consensus size: 24
94962461 AATAGAAGAC
* *
94962471 AATAATAATAAT-ATATTAATAAA
1 AATAATAATAATAAAAATAATAAA
94962494 AATAATAAT-ATAAAAATAATAAA
1 AATAATAATAATAAAAATAATAAA
* * *
94962517 AATAAAAATATGTTTCTAATAATAATAATA
1 AATAATAATA-----ATAAAAATAATAA-A
* *
94962547 AATCAATGATAATAAATAT-ATACAA
1 AAT-AATAATAATAAAAATAATA-AA
* **
94962572 AATAATAATAACAGTAATAA-AATA
1 AATAATAATAATAAAAATAATAA-A
* *
94962596 AGT-ATAAT-ATAATAAAT-ATAAT
1 AATAATAATAATAA-AAATAATAAA
*
94962618 AATAATAATATTAAAAATAA
1 AATAATAATAATAAAAATAA
94962638 CACTCTCCCC
Statistics
Matches: 105, Mismatches: 22, Indels: 33
0.66 0.14 0.21
Matches are distributed among these distances:
22 7 0.07
23 46 0.44
24 18 0.17
25 8 0.08
26 6 0.06
29 11 0.10
30 4 0.04
31 5 0.05
ACGTcount: A:0.64, C:0.02, G:0.02, T:0.31
Consensus pattern (24 bp):
AATAATAATAATAAAAATAATAAA
Found at i:94962506 original size:14 final size:15
Alignment explanation
Indices: 94962488--94962526 Score: 62
Period size: 14 Copynumber: 2.7 Consensus size: 15
94962478 ATAATATATT
94962488 AATAAAAATAAT-AA
1 AATAAAAATAATAAA
*
94962502 TATAAAAATAATAAA
1 AATAAAAATAATAAA
94962517 AATAAAAATA
1 AATAAAAATA
94962527 TGTTTCTAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
14 11 0.50
15 11 0.50
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (15 bp):
AATAAAAATAATAAA
Found at i:94966046 original size:21 final size:21
Alignment explanation
Indices: 94966016--94966055 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
94966006 TAATTGAGTT
94966016 TTTCTATTATTTCAATATGTG
1 TTTCTATTATTTCAATATGTG
*
94966037 TTTCTTTTATTTCAATATG
1 TTTCTATTATTTCAATATG
94966056 GTCAATTTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.23, C:0.10, G:0.07, T:0.60
Consensus pattern (21 bp):
TTTCTATTATTTCAATATGTG
Found at i:94974724 original size:46 final size:46
Alignment explanation
Indices: 94974672--94974889 Score: 330
Period size: 46 Copynumber: 4.7 Consensus size: 46
94974662 AGTGTGCTCT
94974672 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
94974718 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
94974764 CTGATATGAGATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * **
94974810 GTGACATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * *
94974856 ATGACA-GAAAATGAGTAAGACCATAGTTGAAAGA
1 CTGATATG-AAATGTGTAAGACCATGGTTGAAAGA
94974890 CATTATGGCA
Statistics
Matches: 160, Mismatches: 11, Indels: 2
0.92 0.06 0.01
Matches are distributed among these distances:
45 1 0.01
46 159 0.99
ACGTcount: A:0.40, C:0.14, G:0.24, T:0.22
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:94978368 original size:12 final size:12
Alignment explanation
Indices: 94978351--94978385 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
94978341 TTATCTTGAA
94978351 AAAAAAATAATT
1 AAAAAAATAATT
94978363 AAAAAAATAA-T
1 AAAAAAATAATT
*
94978374 AAAAACATAATT
1 AAAAAAATAATT
94978386 TACTAAAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
11 10 0.48
12 11 0.52
ACGTcount: A:0.74, C:0.03, G:0.00, T:0.23
Consensus pattern (12 bp):
AAAAAAATAATT
Found at i:94991027 original size:37 final size:37
Alignment explanation
Indices: 94990971--94991045 Score: 123
Period size: 37 Copynumber: 2.0 Consensus size: 37
94990961 CTGAAAAAAG
*
94990971 TACAAACAATAGAATAGAATATAGGCATTTTTGCTGC
1 TACAAACAATAGAAAAGAATATAGGCATTTTTGCTGC
* *
94991008 TACAAACAATCGAAAAGAATATAGGCATTTTTTCTGC
1 TACAAACAATAGAAAAGAATATAGGCATTTTTGCTGC
94991045 T
1 T
94991046 CATAATCTCA
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.40, C:0.15, G:0.15, T:0.31
Consensus pattern (37 bp):
TACAAACAATAGAAAAGAATATAGGCATTTTTGCTGC
Found at i:94991772 original size:19 final size:19
Alignment explanation
Indices: 94991750--94991788 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
94991740 TCAAACTATT
*
94991750 TTGTGAAAAAA-AAATTGAA
1 TTGT-AAAAAAGAAAATGAA
94991769 TTGTAAAAAAGAAAATGAA
1 TTGTAAAAAAGAAAATGAA
94991788 T
1 T
94991789 GAAAGTTTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 6 0.33
19 12 0.67
ACGTcount: A:0.59, C:0.00, G:0.15, T:0.26
Consensus pattern (19 bp):
TTGTAAAAAAGAAAATGAA
Found at i:94992513 original size:18 final size:18
Alignment explanation
Indices: 94992492--94992774 Score: 169
Period size: 18 Copynumber: 15.3 Consensus size: 18
94992482 GAACAATTAT
* *
94992492 TTATTCAGTAACAGTCAG
1 TTATTCAGTAACAATCAA
*
94992510 TTATTCGGTAACAATCAA
1 TTATTCAGTAACAATCAA
* * *
94992528 TTATTCAATAATAA-CTAG
1 TTATTCAGTAACAATC-AA
* *
94992546 TTATTCAGTATCGATCAA
1 TTATTCAGTAACAATCAA
*
94992564 TTGATTGGTTATCCAGTAACAGTCAA
1 TT-A-----T-T-CAGTAACAATCAA
*
94992590 TTATTCAATAA-AATCAGA
1 TTATTCAGTAACAATCA-A
*
94992608 -TATTCAGTAACAATTAA
1 TTATTCAGTAACAATCAA
* *
94992625 GTTATTCAGTAGCAGTC-A
1 -TTATTCAGTAACAATCAA
* *
94992643 TTCATTCAGTGACAATCAG
1 TT-ATTCAGTAACAATCAA
*
94992662 TTATTCAGTAATAATCAA
1 TTATTCAGTAACAATCAA
* * * *
94992680 TTATTTAGTAATATTCAG
1 TTATTCAGTAACAATCAA
*
94992698 TTATTCAGTAACAGTCAA
1 TTATTCAGTAACAATCAA
* * *
94992716 TTATCCAGTAGCAGTCAA
1 TTATTCAGTAACAATCAA
* * *
94992734 TTATCCGGTAACAGTCAA
1 TTATTCAGTAACAATCAA
* *
94992752 TTATTCAGTAATAATCAG
1 TTATTCAGTAACAATCAA
94992770 TTATT
1 TTATT
94992775 TTATAACTTT
Statistics
Matches: 204, Mismatches: 45, Indels: 32
0.73 0.16 0.11
Matches are distributed among these distances:
17 17 0.08
18 154 0.75
19 17 0.08
20 1 0.00
24 1 0.00
25 2 0.01
26 12 0.06
ACGTcount: A:0.37, C:0.15, G:0.12, T:0.36
Consensus pattern (18 bp):
TTATTCAGTAACAATCAA
Found at i:94992532 original size:36 final size:36
Alignment explanation
Indices: 94992483--94992774 Score: 187
Period size: 36 Copynumber: 7.9 Consensus size: 36
94992473 TAACTCTCCG
* * *
94992483 AACAATTATTTATTCAGTAACAGTCAGTTATTCGGT
1 AACAATCAATTATTCAGTAACAGTCAGTTATTCAGT
* * *
94992519 AACAATCAATTATTCAATAATA-ACTAGTTATTCAGT
1 AACAATCAATTATTCAGTAACAGTC-AGTTATTCAGT
* * * *
94992555 ATCGATCAATTGATTGGTTATCCAGTAACAGTCAATTATTCAAT
1 AACAATCAATT-A-----T-T-CAGTAACAGTCAGTTATTCAGT
* *
94992599 AA-AATCAGA-TATTCAGTAACAATTAAGTTATTCAGT
1 AACAATCA-ATTATTCAGTAAC-AGTCAGTTATTCAGT
* * * *
94992635 AGCAGTC-ATTCATTCAGTGACAATCAGTTATTCAGT
1 AACAATCAATT-ATTCAGTAACAGTCAGTTATTCAGT
* * * *
94992671 AATAATCAATTATTTAGTAATATTCAGTTATTCAGT
1 AACAATCAATTATTCAGTAACAGTCAGTTATTCAGT
* * * * * *
94992707 AACAGTCAATTATCCAGTAGCAGTCAATTATCCGGT
1 AACAATCAATTATTCAGTAACAGTCAGTTATTCAGT
* * *
94992743 AACAGTCAATTATTCAGTAATAATCAGTTATT
1 AACAATCAATTATTCAGTAACAGTCAGTTATT
94992775 TTATAACTTT
Statistics
Matches: 193, Mismatches: 47, Indels: 32
0.71 0.17 0.12
Matches are distributed among these distances:
35 9 0.05
36 141 0.73
37 17 0.09
42 2 0.01
43 6 0.03
44 17 0.09
45 1 0.01
ACGTcount: A:0.37, C:0.15, G:0.12, T:0.36
Consensus pattern (36 bp):
AACAATCAATTATTCAGTAACAGTCAGTTATTCAGT
Found at i:94992967 original size:47 final size:47
Alignment explanation
Indices: 94992891--94993007 Score: 173
Period size: 47 Copynumber: 2.5 Consensus size: 47
94992881 TAGTAACAAT
* * *
94992891 AACAGTAGCAGTACGGTACACAGAATACCTCATTGGAACAAATCCGG
1 AACAGTAACAGTACGGTACACAGAATACCTCATCGGAACAAATCCGA
* *
94992938 AGCAGTAACAGTACGGTACACAGAGTACCTCATCGGAACAAATCCGA
1 AACAGTAACAGTACGGTACACAGAATACCTCATCGGAACAAATCCGA
94992985 AACAGTAACAGTAACGGTA-ACAG
1 AACAGTAACAGT-ACGGTACACAG
94993008 TAACAATATC
Statistics
Matches: 63, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
47 57 0.90
48 6 0.10
ACGTcount: A:0.40, C:0.23, G:0.21, T:0.15
Consensus pattern (47 bp):
AACAGTAACAGTACGGTACACAGAATACCTCATCGGAACAAATCCGA
Found at i:94995825 original size:24 final size:23
Alignment explanation
Indices: 94995798--94995868 Score: 90
Period size: 24 Copynumber: 3.0 Consensus size: 23
94995788 AGATATGCAG
94995798 ATTTGAGTGGCACTATGTGTGCGT
1 ATTTGA-TGGCACTATGTGTGCGT
94995822 ATTTGTATGGCACTATGTGTGCGT
1 ATTTG-ATGGCACTATGTGTGCGT
*
94995846 AATTAT-TTGGCACTATGTGTGCG
1 -ATT-TGATGGCACTATGTGTGCG
94995869 GAGTTGAATC
Statistics
Matches: 43, Mismatches: 1, Indels: 6
0.86 0.02 0.12
Matches are distributed among these distances:
24 38 0.88
25 4 0.09
26 1 0.02
ACGTcount: A:0.18, C:0.13, G:0.30, T:0.39
Consensus pattern (23 bp):
ATTTGATGGCACTATGTGTGCGT
Found at i:94996510 original size:2 final size:2
Alignment explanation
Indices: 94996503--94996539 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
94996493 TATGTAGTAC
94996503 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
94996540 AGTGCTTGAT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:95001313 original size:30 final size:29
Alignment explanation
Indices: 95001252--95001338 Score: 79
Period size: 30 Copynumber: 3.0 Consensus size: 29
95001242 TATGGCATCG
* *
95001252 TTTTTAATAGTTCAATGATTTAAATAAAA
1 TTTTTAATAATTCAATGATCTAAATAAAA
*
95001281 TTTTTAAATAATTCAATGA-CTAAATTATAA
1 TTTTT-AATAATTCAATGATCTAAA-TAAAA
* * * *
95001311 TTTTT-TTAATTAAATAATCAAAATAAAA
1 TTTTTAATAATTCAATGATCTAAATAAAA
95001339 AATTTACCTA
Statistics
Matches: 47, Mismatches: 8, Indels: 7
0.76 0.13 0.11
Matches are distributed among these distances:
28 13 0.28
29 13 0.28
30 21 0.45
ACGTcount: A:0.48, C:0.05, G:0.03, T:0.44
Consensus pattern (29 bp):
TTTTTAATAATTCAATGATCTAAATAAAA
Found at i:95001359 original size:32 final size:31
Alignment explanation
Indices: 95001317--95001385 Score: 77
Period size: 31 Copynumber: 2.2 Consensus size: 31
95001307 ATAATTTTTT
95001317 TAATTAAATAATCAAAATAA-AAAATTTACCTA
1 TAATTAAATAA-C-AAATAATAAAATTTACCTA
* * *
95001349 TAATTTAATAACTAATAATATAATTTACCTA
1 TAATTAAATAACAAATAATAAAATTTACCTA
*
95001380 TGATTA
1 TAATTA
95001386 CCTACTCAAG
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
30 5 0.16
31 16 0.52
32 10 0.32
ACGTcount: A:0.52, C:0.09, G:0.01, T:0.38
Consensus pattern (31 bp):
TAATTAAATAACAAATAATAAAATTTACCTA
Found at i:95002604 original size:20 final size:20
Alignment explanation
Indices: 95002566--95002604 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
95002556 AATTAAAATT
*
95002566 ATATTTTATTTTTGCTTTAA
1 ATATTTTATTTTTGATTTAA
*
95002586 ATATTTTATTTTTTATTTA
1 ATATTTTATTTTTGATTTA
95002605 GTTTTACAAG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.26, C:0.03, G:0.03, T:0.69
Consensus pattern (20 bp):
ATATTTTATTTTTGATTTAA
Found at i:95005656 original size:22 final size:22
Alignment explanation
Indices: 95005608--95005649 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 22
95005598 AAAATATGTT
95005608 AAAATAATTAATTAAAAATAAA
1 AAAATAATTAATTAAAAATAAA
*
95005630 AAAATAATT-TTTAAAAATAA
1 AAAATAATTAATTAAAAATAA
95005650 TACAAATGTG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 10 0.53
22 9 0.47
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (22 bp):
AAAATAATTAATTAAAAATAAA
Found at i:95009475 original size:15 final size:16
Alignment explanation
Indices: 95009446--95009478 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
95009436 TAAATTAAAC
95009446 TAAGCTTAATATTTTT
1 TAAGCTTAATATTTTT
*
95009462 TAAG-TTAATTTTTTT
1 TAAGCTTAATATTTTT
95009477 TA
1 TA
95009479 TGAATTTATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 12 0.75
16 4 0.25
ACGTcount: A:0.30, C:0.03, G:0.06, T:0.61
Consensus pattern (16 bp):
TAAGCTTAATATTTTT
Found at i:95010502 original size:22 final size:22
Alignment explanation
Indices: 95010474--95010515 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
95010464 ACCTGAATTT
95010474 TAAAATT-TAAAAAATAAAAAAA
1 TAAAATTCT-AAAAATAAAAAAA
*
95010496 TAAAATTCTAAATATAAAAA
1 TAAAATTCTAAAAATAAAAA
95010516 TATAGAAGCT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 17 0.94
23 1 0.06
ACGTcount: A:0.71, C:0.02, G:0.00, T:0.26
Consensus pattern (22 bp):
TAAAATTCTAAAAATAAAAAAA
Found at i:95016766 original size:2 final size:2
Alignment explanation
Indices: 95016759--95016800 Score: 84
Period size: 2 Copynumber: 21.0 Consensus size: 2
95016749 ATCATAAATA
95016759 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
95016801 GAGCACATAA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:95022072 original size:12 final size:12
Alignment explanation
Indices: 95022054--95022082 Score: 51
Period size: 11 Copynumber: 2.5 Consensus size: 12
95022044 TTATAAAAAA
95022054 TAAAAAAATTA-
1 TAAAAAAATTAT
95022065 TAAAAAAATTAT
1 TAAAAAAATTAT
95022077 TAAAAA
1 TAAAAA
95022083 TTAATTGAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 11 0.65
12 6 0.35
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (12 bp):
TAAAAAAATTAT
Found at i:95025346 original size:2 final size:2
Alignment explanation
Indices: 95025339--95025373 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
95025329 TTGTATAACA
95025339 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
95025374 AATCTTTTTA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:95025641 original size:21 final size:21
Alignment explanation
Indices: 95025599--95025641 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
95025589 TCTACGGGTC
* *
95025599 TAAAATTTAAGATTTAGGGTT
1 TAAAATTTAAGATCTAGAGTT
*
95025620 TAAAATTTATGATCTAGAGTT
1 TAAAATTTAAGATCTAGAGTT
95025641 T
1 T
95025642 TAGGTATAAG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.37, C:0.02, G:0.16, T:0.44
Consensus pattern (21 bp):
TAAAATTTAAGATCTAGAGTT
Found at i:95034434 original size:7 final size:7
Alignment explanation
Indices: 95034422--95034454 Score: 66
Period size: 7 Copynumber: 4.7 Consensus size: 7
95034412 TATATGTGTG
95034422 AAAATAA
1 AAAATAA
95034429 AAAATAA
1 AAAATAA
95034436 AAAATAA
1 AAAATAA
95034443 AAAATAA
1 AAAATAA
95034450 AAAAT
1 AAAAT
95034455 GGATAAAATG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 26 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (7 bp):
AAAATAA
Found at i:95035619 original size:3 final size:3
Alignment explanation
Indices: 95035613--95035670 Score: 52
Period size: 3 Copynumber: 20.7 Consensus size: 3
95035603 TTTTTATTTT
* * * *
95035613 TTA TTA TT- GTA TTG TTA TAA TT- TTA TTA TTA -TA TTA TTA CTA TT-
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
95035657 TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TT
95035671 TATATTTTTT
Statistics
Matches: 43, Mismatches: 8, Indels: 8
0.73 0.14 0.14
Matches are distributed among these distances:
2 7 0.16
3 36 0.84
ACGTcount: A:0.29, C:0.02, G:0.03, T:0.66
Consensus pattern (3 bp):
TTA
Found at i:95035636 original size:22 final size:22
Alignment explanation
Indices: 95035611--95035666 Score: 78
Period size: 22 Copynumber: 2.5 Consensus size: 22
95035601 TTTTTTTATT
* *
95035611 TTTTATTATTGTATTGTTA-TAA
1 TTTTATTATTATATTATTACT-A
95035633 TTTTATTATTATATTATTACTA
1 TTTTATTATTATATTATTACTA
95035655 TTTTATTATTAT
1 TTTTATTATTAT
95035667 TATTTATATT
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
22 30 0.97
23 1 0.03
ACGTcount: A:0.29, C:0.02, G:0.04, T:0.66
Consensus pattern (22 bp):
TTTTATTATTATATTATTACTA
Found at i:95035680 original size:22 final size:21
Alignment explanation
Indices: 95035607--95035694 Score: 67
Period size: 22 Copynumber: 4.0 Consensus size: 21
95035597 TGATTTTTTT
*
95035607 TATTTTTTATTATTGTATTGTTA
1 TATTTTTTATTA-T-TATTATTA
95035630 TAATTTTATTATTA-TATTATTA
1 T-ATTTT-TTATTATTATTATTA
95035652 CTA--TTTTATTATTATTATTTA
1 -TATTTTTTATTATTATTA-TTA
*
95035673 TATTTTTTAATTCTTATT-TTA
1 TATTTTTT-ATTATTATTATTA
95035694 T
1 T
95035695 TGTTAATTTT
Statistics
Matches: 55, Mismatches: 2, Indels: 18
0.73 0.03 0.24
Matches are distributed among these distances:
19 6 0.11
20 9 0.16
21 7 0.13
22 12 0.22
23 10 0.18
24 5 0.09
25 6 0.11
ACGTcount: A:0.27, C:0.02, G:0.02, T:0.68
Consensus pattern (21 bp):
TATTTTTTATTATTATTATTA
Found at i:95036534 original size:2 final size:2
Alignment explanation
Indices: 95036527--95036551 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
95036517 TATTTTAAAT
95036527 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
95036552 GATGTATGGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:95038184 original size:31 final size:32
Alignment explanation
Indices: 95038149--95038214 Score: 80
Period size: 31 Copynumber: 2.1 Consensus size: 32
95038139 TAAAACCTTA
* * *
95038149 AATATAATAATAAATGACATTTAAA-TAATTT
1 AATATAATAATAAATAAAATATAAATTAATTT
* *
95038180 AATATAATGATACATAAAATATAAATTAATTT
1 AATATAATAATAAATAAAATATAAATTAATTT
95038212 AAT
1 AAT
95038215 TTTTATATTT
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
31 20 0.69
32 9 0.31
ACGTcount: A:0.56, C:0.03, G:0.03, T:0.38
Consensus pattern (32 bp):
AATATAATAATAAATAAAATATAAATTAATTT
Found at i:95038301 original size:8 final size:7
Alignment explanation
Indices: 95038276--95038300 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
95038266 TCCAAACACA
95038276 AAAAGCC
1 AAAAGCC
95038283 AAAAGCC
1 AAAAGCC
95038290 AAAAGCC
1 AAAAGCC
95038297 AAAA
1 AAAA
95038301 ACACCTAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.64, C:0.24, G:0.12, T:0.00
Consensus pattern (7 bp):
AAAAGCC
Found at i:95038571 original size:2 final size:2
Alignment explanation
Indices: 95038564--95038588 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
95038554 ACATACATAC
95038564 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
95038589 AAGGGTAAAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:95043098 original size:21 final size:20
Alignment explanation
Indices: 95043061--95043102 Score: 66
Period size: 20 Copynumber: 2.0 Consensus size: 20
95043051 GAGAACTACG
95043061 AAAAATTAAAATAAAATGTT
1 AAAAATTAAAATAAAATGTT
*
95043081 AAAAATTAAAGATTAAATGTT
1 AAAAATTAAA-ATAAAATGTT
95043102 A
1 A
95043103 TTTTATCTCG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
20 10 0.50
21 10 0.50
ACGTcount: A:0.62, C:0.00, G:0.07, T:0.31
Consensus pattern (20 bp):
AAAAATTAAAATAAAATGTT
Found at i:95043347 original size:2 final size:2
Alignment explanation
Indices: 95043340--95043380 Score: 73
Period size: 2 Copynumber: 20.5 Consensus size: 2
95043330 CTTGATTTTT
*
95043340 AC AC AC AC AC AC AC AC AT AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
95043381 TATATATAAA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.51, C:0.46, G:0.00, T:0.02
Consensus pattern (2 bp):
AC
Found at i:95046844 original size:2 final size:2
Alignment explanation
Indices: 95046837--95046872 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
95046827 ACGTAGTGTT
95046837 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
95046873 TTCTGTGTGT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
GA
Found at i:95047399 original size:22 final size:20
Alignment explanation
Indices: 95047374--95047420 Score: 58
Period size: 22 Copynumber: 2.2 Consensus size: 20
95047364 CAACCTATTT
**
95047374 ATATATTTATTATATATTATAA
1 ATATATTTAACATA-ATTA-AA
95047396 ATATATTTAACATAATTAAA
1 ATATATTTAACATAATTAAA
95047416 ATATA
1 ATATA
95047421 ATATATATTA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
20 7 0.30
21 4 0.17
22 12 0.52
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (20 bp):
ATATATTTAACATAATTAAA
Found at i:95052642 original size:103 final size:104
Alignment explanation
Indices: 95052462--95052661 Score: 348
Period size: 103 Copynumber: 1.9 Consensus size: 104
95052452 TCTCCTCTAA
* * * *
95052462 GGGCTTTAGACAATATAATAGCTCTTATATGAGTTTTTTTGCTTATTGTAATTCCATAAATTATA
1 GGGCTTTAGACAATATAATAGCTCTCATATGAGTTTTCTTGCTCATTGTAATTCCATAAACTATA
95052527 GGAATGTTTAGATTACCAACCACGGAAAGTTGTCTACGG
66 GGAATGTTTAGATTACCAACCACGGAAAGTTGTCTACGG
95052566 GGGCTTTAGACAATATAATAGCTCTCATATGAG-TTTCTTGCTCATTGTAATTCCATAAACTATA
1 GGGCTTTAGACAATATAATAGCTCTCATATGAGTTTTCTTGCTCATTGTAATTCCATAAACTATA
*
95052630 GGAATGTTTAGATTACCAACCATGGAAAGTTG
66 GGAATGTTTAGATTACCAACCACGGAAAGTTG
95052662 CCTTTCGCAT
Statistics
Matches: 91, Mismatches: 5, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
103 59 0.65
104 32 0.35
ACGTcount: A:0.32, C:0.14, G:0.18, T:0.36
Consensus pattern (104 bp):
GGGCTTTAGACAATATAATAGCTCTCATATGAGTTTTCTTGCTCATTGTAATTCCATAAACTATA
GGAATGTTTAGATTACCAACCACGGAAAGTTGTCTACGG
Found at i:95063293 original size:18 final size:18
Alignment explanation
Indices: 95063270--95063316 Score: 60
Period size: 17 Copynumber: 2.7 Consensus size: 18
95063260 AGAACTAATC
*
95063270 TATTTTTTGAACGAACTT
1 TATTTTTTGAACGAAATT
* *
95063288 TATTTTTT-ACCTAAATT
1 TATTTTTTGAACGAAATT
95063305 TATTTTTTGAAC
1 TATTTTTTGAAC
95063317 ATATATTTTT
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
17 14 0.58
18 10 0.42
ACGTcount: A:0.28, C:0.11, G:0.06, T:0.55
Consensus pattern (18 bp):
TATTTTTTGAACGAAATT
Found at i:95065725 original size:19 final size:19
Alignment explanation
Indices: 95065701--95065742 Score: 66
Period size: 19 Copynumber: 2.2 Consensus size: 19
95065691 CCACATTTAC
*
95065701 ACTGCTAATGTGGCTGTTG
1 ACTGCTAATGTGGCCGTTG
*
95065720 ACTGCTGATGTGGCCGTTG
1 ACTGCTAATGTGGCCGTTG
95065739 ACTG
1 ACTG
95065743 TGCGTTCATC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.14, C:0.19, G:0.33, T:0.33
Consensus pattern (19 bp):
ACTGCTAATGTGGCCGTTG
Found at i:95065920 original size:28 final size:29
Alignment explanation
Indices: 95065874--95065934 Score: 81
Period size: 28 Copynumber: 2.1 Consensus size: 29
95065864 AAAATTACAG
* *
95065874 AAAAAATTGTAAAATTTATTAAACATTAT
1 AAAAAATTGTAAAATTTATTAAAAATCAT
95065903 AAAAAATTG-AACAA-TTATTAAAAATCAT
1 AAAAAATTGTAA-AATTTATTAAAAATCAT
95065931 AAAA
1 AAAA
95065935 TTATAAAAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
28 18 0.62
29 11 0.38
ACGTcount: A:0.61, C:0.05, G:0.03, T:0.31
Consensus pattern (29 bp):
AAAAAATTGTAAAATTTATTAAAAATCAT
Found at i:95065944 original size:18 final size:16
Alignment explanation
Indices: 95065891--95066025 Score: 73
Period size: 18 Copynumber: 8.0 Consensus size: 16
95065881 TGTAAAATTT
95065891 ATTAAACATTATAAAAA
1 ATTAAA-ATTATAAAAA
*
95065908 ATTGAACAATTATTAAAA
1 ATT-AA-AATTATAAAAA
95065926 ATCATAAAATTAT-AAAA
1 AT--TAAAATTATAAAAA
* *
95065943 A--AAACTGTA-AAAAT
1 ATTAAAAT-TATAAAAA
*
95065957 ATTAAACATTATGAAAA
1 ATTAAA-ATTATAAAAA
95065974 ATTGAACAATTATAAAAAA
1 ATT-AA-AATTAT-AAAAA
*
95065993 ATTAAAAAGTAGTAAAAA
1 ATT-AAAATTA-TAAAAA
*
95066011 TTTAAAATT-TAAAAA
1 ATTAAAATTATAAAAA
95066026 CTAAAAACTA
Statistics
Matches: 93, Mismatches: 11, Indels: 30
0.69 0.08 0.22
Matches are distributed among these distances:
13 4 0.04
14 6 0.06
15 6 0.06
16 5 0.05
17 20 0.22
18 37 0.40
19 14 0.15
20 1 0.01
ACGTcount: A:0.62, C:0.04, G:0.04, T:0.29
Consensus pattern (16 bp):
ATTAAAATTATAAAAA
Found at i:95065968 original size:48 final size:48
Alignment explanation
Indices: 95065902--95065993 Score: 118
Period size: 48 Copynumber: 1.9 Consensus size: 48
95065892 TTAAACATTA
* *
95065902 TAAAAAATTGAACAATTATTAAAAATCAT-AA-AATTATAAAAAAAACTG
1 TAAAAAATTAAACAATTATGAAAAAT--TGAACAATTATAAAAAAAACTG
95065950 TAAAAATATTAAAC-ATTATGAAAAATTGAACAATTATAAAAAAA
1 TAAAAA-ATTAAACAATTATGAAAAATTGAACAATTATAAAAAAA
95065994 TTAAAAAGTA
Statistics
Matches: 39, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
46 1 0.03
47 2 0.05
48 30 0.77
49 6 0.15
ACGTcount: A:0.63, C:0.05, G:0.04, T:0.27
Consensus pattern (48 bp):
TAAAAAATTAAACAATTATGAAAAATTGAACAATTATAAAAAAAACTG
Found at i:95065974 original size:66 final size:67
Alignment explanation
Indices: 95065864--95065992 Score: 197
Period size: 66 Copynumber: 1.9 Consensus size: 67
95065854 AAAAGAGAGC
* * * *
95065864 AAAATTACAGAAAAAATTGTAAAATTTATTAAACATTATAAAAAATTGAACAATTATTAAAAATC
1 AAAATTACAAAAAAAACTGTAAAATATATTAAACATTATAAAAAATTGAACAATTATAAAAAATC
95065929 AT
66 AT
* *
95065931 AAAATTATAAAAAAAACTGTAAAA-ATATTAAACATTATGAAAAATTGAACAATTATAAAAAA
1 AAAATTACAAAAAAAACTGTAAAATATATTAAACATTATAAAAAATTGAACAATTATAAAAAA
95065993 ATTAAAAAGT
Statistics
Matches: 56, Mismatches: 6, Indels: 1
0.89 0.10 0.02
Matches are distributed among these distances:
66 35 0.62
67 21 0.38
ACGTcount: A:0.61, C:0.05, G:0.05, T:0.29
Consensus pattern (67 bp):
AAAATTACAAAAAAAACTGTAAAATATATTAAACATTATAAAAAATTGAACAATTATAAAAAATC
AT
Found at i:95066010 original size:66 final size:67
Alignment explanation
Indices: 95065874--95066010 Score: 188
Period size: 66 Copynumber: 2.0 Consensus size: 67
95065864 AAAATTACAG
* * * *
95065874 AAAAAATTGTAAAATTTATTAAACATTATAAAAAATTGAACAATTATTAAAAATCATAAAATTAT
1 AAAAAACTGTAAAATATATTAAACATTATAAAAAATTGAACAATTATAAAAAATCATAAAAGTAT
95065939 AA
66 AA
* *
95065941 AAAAAACTGTAAAA-ATATTAAACATTATGAAAAATTGAACAATTATAAAAAAATTA-AAAAGTA
1 AAAAAACTGTAAAATATATTAAACATTATAAAAAATTGAACAATTAT-AAAAAATCATAAAAGTA
95066004 GTAA
65 -TAA
95066008 AAA
1 AAA
95066011 TTTAAAATTT
Statistics
Matches: 62, Mismatches: 6, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
66 36 0.58
67 26 0.42
ACGTcount: A:0.62, C:0.04, G:0.05, T:0.28
Consensus pattern (67 bp):
AAAAAACTGTAAAATATATTAAACATTATAAAAAATTGAACAATTATAAAAAATCATAAAAGTAT
AA
Found at i:95066308 original size:40 final size:40
Alignment explanation
Indices: 95066253--95066337 Score: 118
Period size: 40 Copynumber: 2.1 Consensus size: 40
95066243 CAAATACATT
* *
95066253 TAAAATAAATATTAAAACAATATACAAATAAAAAATGATAC
1 TAAAATAAATATTAAAACAATACACAAATAAAAAAT-ATAA
* *
95066294 TAAAAT-AATTTTAAAACAATACACAAATTAAAAATATAA
1 TAAAATAAATATTAAAACAATACACAAATAAAAAATATAA
95066333 TAAAA
1 TAAAA
95066338 AATAATTATA
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
39 8 0.20
40 26 0.65
41 6 0.15
ACGTcount: A:0.66, C:0.07, G:0.01, T:0.26
Consensus pattern (40 bp):
TAAAATAAATATTAAAACAATACACAAATAAAAAATATAA
Found at i:95066326 original size:41 final size:40
Alignment explanation
Indices: 95066253--95066344 Score: 114
Period size: 41 Copynumber: 2.2 Consensus size: 40
95066243 CAAATACATT
* * *
95066253 TAAAATAAATATTAAAACAATATACAAATAAAAA-ATGATA
1 TAAAAT-AATTTTAAAACAATACACAAATAAAAATATAATA
95066293 CTAAAATAATTTTAAAACAATACACAAATTAAAAATATAATA
1 -TAAAATAATTTTAAAACAATACACAAA-TAAAAATATAATA
*
95066335 AAAAATAATT
1 TAAAATAATT
95066345 ATATTAAAAT
Statistics
Matches: 45, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
40 19 0.42
41 21 0.47
42 5 0.11
ACGTcount: A:0.65, C:0.07, G:0.01, T:0.27
Consensus pattern (40 bp):
TAAAATAATTTTAAAACAATACACAAATAAAAATATAATA
Found at i:95074999 original size:245 final size:245
Alignment explanation
Indices: 95074569--95075058 Score: 813
Period size: 245 Copynumber: 2.0 Consensus size: 245
95074559 TAAAACAAGA
95074569 AAGTTAGCACATAAGTTAATCCTACCAGATAAGCAACACCACAAGCATGGCAATGTAGCATCATA
1 AAGTTAGCACATAAGTTAATCCTACCAGATAAGCAACACCACAAGCATGGCAATGTAGCATCATA
** * *
95074634 AAGGTGGTTTAAGGATCAATATTAAAGATGCAATAACAATTTCTTTGTTTTTATTTCTTGCATAG
66 AAGGTAATTTAAGGACCAATATTAAAGATGCAATAACAATTTCTCTGTTTTTATTTCTTGCATAG
* * *
95074699 CTTCGATTTGGCCTCCATCAGTTTCACCAAAGACATTTAATTATCAAGTAGTTGCCTTGACGTTC
131 CTTCGATTCGGCCTCCATCAGTTTCACCAAAGACATTTAATTATCAACTAGTTGCCTCGACGTTC
* *
95074764 TATGATAAGTTCTCAAGCACAACACCAAAAACAGAAGTCAGTGACAAGTC
196 TATGATAAGTTCTCAACCACAACACCAAAAACAAAAGTCAGTGACAAGTC
*
95074814 AAGTTAGCACATAAGTTAATCCTACCAGATAAGCAACACCAGAAGCATGGCAATGTAGCATCATA
1 AAGTTAGCACATAAGTTAATCCTACCAGATAAGCAACACCACAAGCATGGCAATGTAGCATCATA
* *
95074879 AAGGTAATTTAAGGACCCATATTAAAGATGCAATAACAGTTTCTCTGTTTTTATTTCTTGCATAG
66 AAGGTAATTTAAGGACCAATATTAAAGATGCAATAACAATTTCTCTGTTTTTATTTCTTGCATAG
**
95074944 C-TCTGATTCGGCCTCCATCAGTTTTC-GTAAAGACATTTAATTATCAACTAGTTGCCTCGACGT
131 CTTC-GATTCGGCCTCCATCAG-TTTCACCAAAGACATTTAATTATCAACTAGTTGCCTCGACGT
*
95075007 TCTATGATAAGTTCTCAACCACAATACCAAAAACAAAAGTCAGTGACAAGTC
194 TCTATGATAAGTTCTCAACCACAACACCAAAAACAAAAGTCAGTGACAAGTC
95075059 TGTTTCAGCT
Statistics
Matches: 228, Mismatches: 15, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
244 2 0.01
245 222 0.97
246 4 0.02
ACGTcount: A:0.35, C:0.20, G:0.16, T:0.29
Consensus pattern (245 bp):
AAGTTAGCACATAAGTTAATCCTACCAGATAAGCAACACCACAAGCATGGCAATGTAGCATCATA
AAGGTAATTTAAGGACCAATATTAAAGATGCAATAACAATTTCTCTGTTTTTATTTCTTGCATAG
CTTCGATTCGGCCTCCATCAGTTTCACCAAAGACATTTAATTATCAACTAGTTGCCTCGACGTTC
TATGATAAGTTCTCAACCACAACACCAAAAACAAAAGTCAGTGACAAGTC
Found at i:95083716 original size:35 final size:35
Alignment explanation
Indices: 95083654--95083726 Score: 83
Period size: 35 Copynumber: 2.1 Consensus size: 35
95083644 ATATCAAAAA
* * * * *
95083654 CATGTACTATTAGGAATCTTTATTGTTGAGTGTGT
1 CATGTACTACTAAGAATCGTCACTGTTGAGTGTGT
**
95083689 CATGTACTACTAAGAATCGTCACTGTTGTTTGTGT
1 CATGTACTACTAAGAATCGTCACTGTTGAGTGTGT
95083724 CAT
1 CAT
95083727 TTATGTTTGC
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
35 31 1.00
ACGTcount: A:0.23, C:0.14, G:0.21, T:0.42
Consensus pattern (35 bp):
CATGTACTACTAAGAATCGTCACTGTTGAGTGTGT
Found at i:95084246 original size:27 final size:27
Alignment explanation
Indices: 95084216--95084280 Score: 96
Period size: 27 Copynumber: 2.4 Consensus size: 27
95084206 ATTATAAAAA
*
95084216 TAAAAATTATTTAAATA-TTTAAGAATT
1 TAAAAAATATTTAAATATTTTAAG-ATT
95084243 TAAAAAATATTTAAATATTTTAAGATT
1 TAAAAAATATTTAAATATTTTAAGATT
95084270 TAATAAAATAT
1 TAA-AAAATAT
95084281 AAATATCTAA
Statistics
Matches: 35, Mismatches: 1, Indels: 3
0.90 0.03 0.08
Matches are distributed among these distances:
27 22 0.63
28 13 0.37
ACGTcount: A:0.54, C:0.00, G:0.03, T:0.43
Consensus pattern (27 bp):
TAAAAAATATTTAAATATTTTAAGATT
Found at i:95084761 original size:24 final size:24
Alignment explanation
Indices: 95084718--95084783 Score: 71
Period size: 24 Copynumber: 2.7 Consensus size: 24
95084708 TAAAAGTTTA
*
95084718 ACTAAAATCTTAAGAGTAATTTTATT-
1 ACTAAAATCTT-A-ACTAATTTT-TTC
* *
95084744 TCTAAAATTTTAACTAATTTTTTC
1 ACTAAAATCTTAACTAATTTTTTC
95084768 ACTAAAATCTTAACTA
1 ACTAAAATCTTAACTA
95084784 CTAAGTCGTC
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
23 2 0.06
24 22 0.65
25 1 0.03
26 9 0.26
ACGTcount: A:0.41, C:0.12, G:0.03, T:0.44
Consensus pattern (24 bp):
ACTAAAATCTTAACTAATTTTTTC
Found at i:95085811 original size:44 final size:44
Alignment explanation
Indices: 95085748--95085836 Score: 178
Period size: 44 Copynumber: 2.0 Consensus size: 44
95085738 TGTTGAAAGT
95085748 AGCATATCTTCACCAGTTTTAGAGGTTCTGGCTTCATGTTCAAC
1 AGCATATCTTCACCAGTTTTAGAGGTTCTGGCTTCATGTTCAAC
95085792 AGCATATCTTCACCAGTTTTAGAGGTTCTGGCTTCATGTTCAAC
1 AGCATATCTTCACCAGTTTTAGAGGTTCTGGCTTCATGTTCAAC
95085836 A
1 A
95085837 CTAGCTGATG
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 45 1.00
ACGTcount: A:0.24, C:0.22, G:0.18, T:0.36
Consensus pattern (44 bp):
AGCATATCTTCACCAGTTTTAGAGGTTCTGGCTTCATGTTCAAC
Found at i:95088182 original size:13 final size:13
Alignment explanation
Indices: 95088164--95088188 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
95088154 AATTTACTCC
95088164 TTATTTTATTTAT
1 TTATTTTATTTAT
95088177 TTATTTTATTTA
1 TTATTTTATTTA
95088189 AAAATCTCAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (13 bp):
TTATTTTATTTAT
Found at i:95088468 original size:18 final size:19
Alignment explanation
Indices: 95088447--95088485 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 19
95088437 ATTTTGAAAG
95088447 TTTTT-ATATTTTAT-ATT
1 TTTTTAATATTTTATAATT
*
95088464 TTTTTAATTTTTTATAATT
1 TTTTTAATATTTTATAATT
95088483 TTT
1 TTT
95088486 GGAATTTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 5 0.26
18 8 0.42
19 6 0.32
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (19 bp):
TTTTTAATATTTTATAATT
Found at i:95089961 original size:17 final size:18
Alignment explanation
Indices: 95089928--95089961 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
95089918 TTTTCCTCAT
*
95089928 TTTAATTTCTGCAATTTA
1 TTTAATTTCTACAATTTA
95089946 TTTAATTTC-ACAATTT
1 TTTAATTTCTACAATTT
95089962 CAATTCACTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.29, C:0.12, G:0.03, T:0.56
Consensus pattern (18 bp):
TTTAATTTCTACAATTTA
Found at i:95093100 original size:7 final size:7
Alignment explanation
Indices: 95093086--95093133 Score: 69
Period size: 7 Copynumber: 6.9 Consensus size: 7
95093076 CCACTTATCA
95093086 CTTGTCG
1 CTTGTCG
*
95093093 CTTATCG
1 CTTGTCG
95093100 CTTGTCG
1 CTTGTCG
95093107 CTTGTCG
1 CTTGTCG
*
95093114 CTTGTCA
1 CTTGTCG
*
95093121 CTTGTCA
1 CTTGTCG
95093128 CTTGTC
1 CTTGTC
95093134 ACTGATCAGA
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
7 38 1.00
ACGTcount: A:0.06, C:0.29, G:0.21, T:0.44
Consensus pattern (7 bp):
CTTGTCG
Found at i:95093112 original size:21 final size:21
Alignment explanation
Indices: 95093077--95093133 Score: 78
Period size: 21 Copynumber: 2.7 Consensus size: 21
95093067 CTAAAGCTAC
*
95093077 CACTTATCACTTGTCGCTTAT
1 CACTTGTCACTTGTCGCTTAT
* * *
95093098 CGCTTGTCGCTTGTCGCTTGT
1 CACTTGTCACTTGTCGCTTAT
95093119 CACTTGTCACTTGTC
1 CACTTGTCACTTGTC
95093134 ACTGATCAGA
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.11, C:0.30, G:0.18, T:0.42
Consensus pattern (21 bp):
CACTTGTCACTTGTCGCTTAT
Found at i:95093134 original size:7 final size:7
Alignment explanation
Indices: 95093077--95093136 Score: 66
Period size: 7 Copynumber: 8.6 Consensus size: 7
95093067 CTAAAGCTAC
*
95093077 CACTTAT
1 CACTTGT
95093084 CACTTGT
1 CACTTGT
* *
95093091 CGCTTAT
1 CACTTGT
*
95093098 CGCTTGT
1 CACTTGT
*
95093105 CGCTTGT
1 CACTTGT
*
95093112 CGCTTGT
1 CACTTGT
95093119 CACTTGT
1 CACTTGT
95093126 CACTTGT
1 CACTTGT
95093133 CACT
1 CACT
95093137 GATCAGATAA
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
7 48 1.00
ACGTcount: A:0.12, C:0.30, G:0.17, T:0.42
Consensus pattern (7 bp):
CACTTGT
Found at i:95097973 original size:14 final size:14
Alignment explanation
Indices: 95097923--95097985 Score: 51
Period size: 14 Copynumber: 4.5 Consensus size: 14
95097913 AATTAGATAA
95097923 ATATTATT-TTATT
1 ATATTATTATTATT
* * *
95097936 AATATTTTTATGA-G
1 -ATATTATTATTATT
95097950 ATATTTATTATTATT
1 ATA-TTATTATTATT
95097965 ATATTATTATTTATT
1 ATATTATTA-TTATT
95097980 -TATTAT
1 ATATTAT
95097986 AAAAGGAAGA
Statistics
Matches: 39, Mismatches: 6, Indels: 8
0.74 0.11 0.15
Matches are distributed among these distances:
13 3 0.08
14 26 0.67
15 10 0.26
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.63
Consensus pattern (14 bp):
ATATTATTATTATT
Found at i:95100326 original size:124 final size:124
Alignment explanation
Indices: 95100104--95100328 Score: 317
Period size: 124 Copynumber: 1.8 Consensus size: 124
95100094 GAATTATGTG
* * * * * * * *
95100104 AAATGAAATATGGATGTGTATTGATTATTGATTTATGTGTGTATGAGTATTTGAATGATACCCGG
1 AAATGAAATACGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATACCCGG
* **
95100169 GCTAAGTCCCGAAGGCGATTATGCTAGTGATTATATTTGTGTTTGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGACGATTATGCTAGAAATTATATTTGTGTTTGAGCCTTAGTAACGA
*
95100228 AAATGAAATACGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATATCCGG
1 AAATGAAATACGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATACCCGG
*
95100293 GCTAAGTCCCGAAGATG-TTATTGCTAGAAATTATAT
66 GCTAAGTCCCGAAGACGATTA-TGCTAGAAATTATAT
95100329 CCGGGTTAAG
Statistics
Matches: 87, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
123 3 0.03
124 84 0.97
ACGTcount: A:0.31, C:0.10, G:0.24, T:0.35
Consensus pattern (124 bp):
AAATGAAATACGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATACCCGG
GCTAAGTCCCGAAGACGATTATGCTAGAAATTATATTTGTGTTTGAGCCTTAGTAACGA
Found at i:95100450 original size:40 final size:40
Alignment explanation
Indices: 95100323--95100452 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
95100313 TTGCTAGAAA
* * *
95100323 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGCGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * *
95100363 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
95100403 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
95100443 TTATATCCGG
1 TTATATCCGG
95100453 TTGTATTCCG
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 4 0.05
40 73 0.95
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.23
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:95103135 original size:46 final size:46
Alignment explanation
Indices: 95103083--95103540 Score: 585
Period size: 46 Copynumber: 10.0 Consensus size: 46
95103073 AGTGTGCTCT
* * *
95103083 CTGATATGAAATGTGTAAGATCATGGTTGAAAGATACCATGACAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
95103129 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *
95103175 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGACAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *
95103221 TTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *
95103267 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACTATGGCAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * *
95103313 ATGATATGAAATGAATAAGATCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *** * * *
95103359 ATGACGGGAAATGAATAAGACCATGGTTGAAAGATACCATGACAGC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * * *
95103405 GTAACATGAAATGAATAAGACCATGGTTGAAAGATACCATGACAGC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * *
95103451 GTAACATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * *
95103497 ATGACA-GAAAATGAGTAAGACCATAGTTGAAAGACACAATGGCA
1 CTGATATG-AAATGAGTAAGACCATGGTTGAAAGATACCATGGCA
95103541 TCATGTCAAA
Statistics
Matches: 381, Mismatches: 30, Indels: 2
0.92 0.07 0.00
Matches are distributed among these distances:
45 1 0.00
46 380 1.00
ACGTcount: A:0.41, C:0.14, G:0.23, T:0.22
Consensus pattern (46 bp):
CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:95103734 original size:25 final size:25
Alignment explanation
Indices: 95103706--95103766 Score: 95
Period size: 25 Copynumber: 2.4 Consensus size: 25
95103696 ATAGTTGTAT
**
95103706 GAAATAATTATGAAGATAGATAAAC
1 GAAATAAGAATGAAGATAGATAAAC
*
95103731 GAAATAAGAATTAAGATAGATAAAC
1 GAAATAAGAATGAAGATAGATAAAC
95103756 GAAATAAGAAT
1 GAAATAAGAAT
95103767 TAAGTAAATG
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 33 1.00
ACGTcount: A:0.59, C:0.03, G:0.16, T:0.21
Consensus pattern (25 bp):
GAAATAAGAATGAAGATAGATAAAC
Found at i:95103767 original size:25 final size:25
Alignment explanation
Indices: 95103718--95103770 Score: 106
Period size: 25 Copynumber: 2.1 Consensus size: 25
95103708 AATAATTATG
95103718 AAGATAGATAAACGAAATAAGAATT
1 AAGATAGATAAACGAAATAAGAATT
95103743 AAGATAGATAAACGAAATAAGAATT
1 AAGATAGATAAACGAAATAAGAATT
95103768 AAG
1 AAG
95103771 TAAATGGAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.60, C:0.04, G:0.17, T:0.19
Consensus pattern (25 bp):
AAGATAGATAAACGAAATAAGAATT
Found at i:95103873 original size:16 final size:17
Alignment explanation
Indices: 95103852--95103884 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
95103842 ATGATGGAGC
95103852 ATGAAAT-ATTGATATA
1 ATGAAATGATTGATATA
95103868 ATGAAATGATTGATATA
1 ATGAAATGATTGATATA
95103885 TACTTATGTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.48, C:0.00, G:0.15, T:0.36
Consensus pattern (17 bp):
ATGAAATGATTGATATA
Found at i:95111499 original size:25 final size:24
Alignment explanation
Indices: 95111465--95111654 Score: 140
Period size: 25 Copynumber: 8.0 Consensus size: 24
95111455 ACAAATGTGC
95111465 TAATCAGAGAGCACTGGCGTGCTA
1 TAATCAGAGAGCACTGGCGTGCTA
95111489 GTAATCAGAGAGCACTGGCGTGCTA
1 -TAATCAGAGAGCACTGGCGTGCTA
* ****
95111514 AATATCAGAGAGCACAAATGTGC--
1 TA-ATCAGAGAGCACTGGCGTGCTA
95111537 TAATCAGAGAGCACTGGCGTGCTA
1 TAATCAGAGAGCACTGGCGTGCTA
* ****
95111561 AATATCAGAGAGCACAAATGTGC--
1 TA-ATCAGAGAGCACTGGCGTGCTA
*
95111584 TAATCAGAGGGCACTGGCGTGCTA
1 TAATCAGAGAGCACTGGCGTGCTA
* * ****
95111608 AATATCAGAGAACACAAATGTGC--
1 TA-ATCAGAGAGCACTGGCGTGCTA
*
95111631 TAATCAGAGAGCACTGACGTGCTA
1 TAATCAGAGAGCACTGGCGTGCTA
95111655 ATATTCATAG
Statistics
Matches: 123, Mismatches: 33, Indels: 19
0.70 0.19 0.11
Matches are distributed among these distances:
22 47 0.38
23 3 0.02
24 3 0.02
25 70 0.57
ACGTcount: A:0.35, C:0.19, G:0.26, T:0.19
Consensus pattern (24 bp):
TAATCAGAGAGCACTGGCGTGCTA
Found at i:95111512 original size:47 final size:46
Alignment explanation
Indices: 95111490--95111658 Score: 284
Period size: 47 Copynumber: 3.6 Consensus size: 46
95111480 GGCGTGCTAG
95111490 TAATCAGAGAGCACTGGCGTGCTAAATATCAGAGAGCACAAATGTGC
1 TAATCAGAGAGCACTGGCGTGCT-AATATCAGAGAGCACAAATGTGC
95111537 TAATCAGAGAGCACTGGCGTGCTAAATATCAGAGAGCACAAATGTGC
1 TAATCAGAGAGCACTGGCGTGCT-AATATCAGAGAGCACAAATGTGC
* *
95111584 TAATCAGAGGGCACTGGCGTGCTAAATATCAGAGAACACAAATGTGC
1 TAATCAGAGAGCACTGGCGTGCT-AATATCAGAGAGCACAAATGTGC
*
95111631 TAATCAGAGAGCACTGACGTGCTAATAT
1 TAATCAGAGAGCACTGGCGTGCTAATAT
95111659 TCATAGTGTA
Statistics
Matches: 118, Mismatches: 4, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
46 5 0.04
47 113 0.96
ACGTcount: A:0.36, C:0.19, G:0.25, T:0.20
Consensus pattern (46 bp):
TAATCAGAGAGCACTGGCGTGCTAATATCAGAGAGCACAAATGTGC
Found at i:95111584 original size:72 final size:72
Alignment explanation
Indices: 95111449--95111586 Score: 215
Period size: 72 Copynumber: 1.9 Consensus size: 72
95111439 GTGCTATACT
* ***
95111449 GAGAGCACAAATGTGCTAATCAGAGAGCACTGGCGTGCTAGTAATCAGAGAGCACTGGCGTGCTA
1 GAGAGCACAAATGTGCTAATCAGAGAGCACTGGCGTGCTAATAATCAGAGAGCACAAACGTGCTA
95111514 AATATCA
66 AATATCA
*
95111521 GAGAGCACAAATGTGCTAATCAGAGAGCACTGGCGTGCTAA-ATATCAGAGAGCACAAATGTGCT
1 GAGAGCACAAATGTGCTAATCAGAGAGCACTGGCGTGCTAATA-ATCAGAGAGCACAAACGTGCT
95111585 AA
65 AA
95111587 TCAGAGGGCA
Statistics
Matches: 60, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
71 1 0.02
72 59 0.98
ACGTcount: A:0.36, C:0.19, G:0.27, T:0.19
Consensus pattern (72 bp):
GAGAGCACAAATGTGCTAATCAGAGAGCACTGGCGTGCTAATAATCAGAGAGCACAAACGTGCTA
AATATCA
Found at i:95112034 original size:26 final size:26
Alignment explanation
Indices: 95111998--95112107 Score: 184
Period size: 26 Copynumber: 4.2 Consensus size: 26
95111988 TGATACAAAT
95111998 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
95112024 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
95112050 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
95112076 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
95112102 TGATAA
1 TGATAA
95112108 GAATTTCATG
Statistics
Matches: 82, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 82 1.00
ACGTcount: A:0.34, C:0.05, G:0.25, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:95113768 original size:27 final size:27
Alignment explanation
Indices: 95113729--95113866 Score: 170
Period size: 27 Copynumber: 5.1 Consensus size: 27
95113719 GGAAGCGTTT
* *
95113729 TGGTGGCTATGCCACAAATATCTGATC
1 TGGTGGCTCTGCCACAAATATCTGTTC
*
95113756 TGGTGGCTCTGCCACATATATCTGTTC
1 TGGTGGCTCTGCCACAAATATCTGTTC
* *
95113783 TGGTGGCTCTGCTACATATATCTGTTC
1 TGGTGGCTCTGCCACAAATATCTGTTC
* *
95113810 TGGTGGCTCTGCCACGATTATCTGTATC
1 TGGTGGCTCTGCCACAAATATCTGT-TC
* * *
95113838 TGGTGACTCTGTCAC-ATTATCTGTTC
1 TGGTGGCTCTGCCACAAATATCTGTTC
95113864 TGG
1 TGG
95113867 CAGCCATGCT
Statistics
Matches: 100, Mismatches: 10, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
26 5 0.05
27 80 0.80
28 15 0.15
ACGTcount: A:0.17, C:0.23, G:0.23, T:0.37
Consensus pattern (27 bp):
TGGTGGCTCTGCCACAAATATCTGTTC
Found at i:95116753 original size:48 final size:48
Alignment explanation
Indices: 95116695--95117032 Score: 496
Period size: 48 Copynumber: 7.0 Consensus size: 48
95116685 ATATACACAC
* * * *
95116695 ATCTCCTACATATTGCTCATTAGCCATTCGGATTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* ** *
95116743 ATCTCATACATATTTCACAGTAGCCATTCGGCTTTACTGCATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
95116791 ATCTCATACATATTTCATATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
95116839 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
** **
95116887 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACTGCATATTTAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
95116935 ATCTCATACATATTTCATATTAGCCATTCGGCTTTACCGCATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* * * *
95116983 ATCTCATACATATTTCACACTAGCCATTCTGCTTTACCACACATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
95117031 AT
1 AT
95117033 ATTTATCTTG
Statistics
Matches: 260, Mismatches: 30, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
48 260 1.00
ACGTcount: A:0.30, C:0.26, G:0.07, T:0.37
Consensus pattern (48 bp):
ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
Found at i:95116863 original size:144 final size:144
Alignment explanation
Indices: 95116695--95117032 Score: 577
Period size: 144 Copynumber: 2.3 Consensus size: 144
95116685 ATATACACAC
* * * * *
95116695 ATCTCCTACATATTGCTCATTAGCCATTCGGATTTACCACATATACATATCTCATACATATTTCA
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
95116760 CAGTAGCCATTCGGCTTTACTGCATATATATATCTCATACATATTTCATATTAGCCATTCGGCTT
66 CAGTAGCCATTCGGCTTTACTGCATATATATATCTCATACATATTTCATATTAGCCATTCGGCTT
95116825 TACCACATATACAT
131 TACCACATATACAT
95116839 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
* *
95116904 CATTAGCCATTCGGCTTTACTGCATATTTATATCTCATACATATTTCATATTAGCCATTCGGCTT
66 CAGTAGCCATTCGGCTTTACTGCATATATATATCTCATACATATTTCATATTAGCCATTCGGCTT
*
95116969 TACCGCATATACAT
131 TACCACATATACAT
* * *
95116983 ATCTCATACATATTTCACACTAGCCATTCTGCTTTACCACACATATATAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATAT
95117033 ATTTATCTTG
Statistics
Matches: 183, Mismatches: 11, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
144 183 1.00
ACGTcount: A:0.30, C:0.26, G:0.07, T:0.37
Consensus pattern (144 bp):
ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
CAGTAGCCATTCGGCTTTACTGCATATATATATCTCATACATATTTCATATTAGCCATTCGGCTT
TACCACATATACAT
Found at i:95123491 original size:22 final size:22
Alignment explanation
Indices: 95123451--95123492 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
95123441 TGGCCACCCA
*
95123451 CCTTGGCCACCAACTCCACCAC
1 CCTTGGCCACCAACACCACCAC
95123473 CCTTGGCCACCTAA-ACCACC
1 CCTTGGCCACC-AACACCACC
95123493 CCAACCACTC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 16 0.89
23 2 0.11
ACGTcount: A:0.24, C:0.52, G:0.10, T:0.14
Consensus pattern (22 bp):
CCTTGGCCACCAACACCACCAC
Found at i:95123610 original size:23 final size:23
Alignment explanation
Indices: 95123547--95123666 Score: 102
Period size: 23 Copynumber: 5.1 Consensus size: 23
95123537 ACTTTGTTTT
*
95123547 AGGTTTTTTTGGTTTTTTGGAGA
1 AGGTTTTTTTTGTTTTTTGGAGA
* *
95123570 AGGATTGTTCTTTG--TTTTGGAGG
1 AGG-TT-TTTTTTGTTTTTTGGAGA
*
95123593 AGGTTTTTTTTGTTTTTTGGAGG
1 AGGTTTTTTTTGTTTTTTGGAGA
* *
95123616 TGTTTTTTTTTTGTTTTTTGGAAAGA
1 AG-GTTTTTTTTGTTTTTTGG--AGA
* *
95123642 AGGTTATTTTTGTTTCTTGGA-A
1 AGGTTTTTTTTGTTTTTTGGAGA
95123664 AGG
1 AGG
95123667 CTAGTTTTTG
Statistics
Matches: 79, Mismatches: 11, Indels: 15
0.75 0.10 0.14
Matches are distributed among these distances:
21 6 0.08
22 6 0.08
23 25 0.32
24 19 0.24
25 20 0.25
26 3 0.04
ACGTcount: A:0.14, C:0.02, G:0.28, T:0.56
Consensus pattern (23 bp):
AGGTTTTTTTTGTTTTTTGGAGA
Found at i:95123977 original size:3 final size:3
Alignment explanation
Indices: 95123963--95124048 Score: 65
Period size: 3 Copynumber: 28.3 Consensus size: 3
95123953 GAGCTTTGTT
* *
95123963 TTA TTA TT- TTA TTA TTT TTA CTA TTA TT- TATA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA
95124007 TT- TCTCA TGTA TATA TTA TTA TT- TATA TTA TTA TTA -TA TTA T
1 TTA T-T-A T-TA T-TA TTA TTA TTA T-TA TTA TTA TTA TTA TTA T
95124049 ATATGCCCTC
Statistics
Matches: 68, Mismatches: 6, Indels: 18
0.74 0.07 0.20
Matches are distributed among these distances:
2 7 0.10
3 52 0.76
4 7 0.10
5 2 0.03
ACGTcount: A:0.30, C:0.03, G:0.01, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:95124001 original size:27 final size:27
Alignment explanation
Indices: 95123962--95124048 Score: 78
Period size: 27 Copynumber: 3.4 Consensus size: 27
95123952 AGAGCTTTGT
95123962 TTTATTATT-TTATTATTTTTACTATTA
1 TTTA-TATTATTATTATTTTTACTATTA
*
95123989 TTTATATTATTATTATTATTT-C--TCA
1 TTTATATTATTATTATT-TTTACTATTA
* * *
95124014 TGTATA-TATTATTATTTATATTATTA
1 TTTATATTATTATTATTTTTACTATTA
95124040 -TTATATTAT
1 TTTATATTAT
95124049 ATATGCCCTC
Statistics
Matches: 48, Mismatches: 6, Indels: 13
0.72 0.09 0.19
Matches are distributed among these distances:
23 2 0.04
24 10 0.21
25 11 0.23
26 9 0.19
27 13 0.27
28 3 0.06
ACGTcount: A:0.30, C:0.03, G:0.01, T:0.66
Consensus pattern (27 bp):
TTTATATTATTATTATTTTTACTATTA
Found at i:95124023 original size:21 final size:18
Alignment explanation
Indices: 95123963--95124052 Score: 92
Period size: 18 Copynumber: 4.7 Consensus size: 18
95123953 GAGCTTTGTT
*
95123963 TTATTATTTTATTATTTTTA
1 TTATTA-TTTA-TATTATTA
*
95123983 CTATTATTTATATTATTA
1 TTATTATTTATATTATTA
*
95124001 TTATTATTTCTCATGTATATA
1 TTATTATTTAT-AT-TAT-TA
95124022 TTATTATTTATATTATTA
1 TTATTATTTATATTATTA
95124040 TTA-TATTATATAT
1 TTATTATT-TATAT
95124053 GCCCTCTCCA
Statistics
Matches: 61, Mismatches: 5, Indels: 10
0.80 0.07 0.13
Matches are distributed among these distances:
17 4 0.07
18 26 0.43
19 9 0.15
20 10 0.16
21 12 0.20
ACGTcount: A:0.31, C:0.03, G:0.01, T:0.64
Consensus pattern (18 bp):
TTATTATTTATATTATTA
Found at i:95124290 original size:2 final size:2
Alignment explanation
Indices: 95124283--95124308 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
95124273 TATTTTTATG
95124283 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
95124309 GTATTGTTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Done.