Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr02 99090824
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 99090824
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 317 characters in sequence are not A, C, G, or T
File 304 of 318
Found at i:95124470 original size:125 final size:121
Alignment explanation
Indices: 95124250--95124472 Score: 297
Period size: 125 Copynumber: 1.8 Consensus size: 121
95124240 TTGCTATCAC
* * *
95124250 TATTACTATTATATATTAGTGTATATTTTTATGTATATATATATATATATATATATATAGTATTG
1 TATTACTATTATATAGTAGTGTATATTTCTATGTATATATATATATATATATATATATAGTATTA
* *
95124315 TTTTTTATTACTTTAATTTAATATTTTTATTATATTTGCTTTTTGTATTTCTATATT
66 TTGTTTATTACTTTAA-TTAATATTCTTATTATATTTGCTTTTTGTATTTCTATATT
* *
95124372 TATTATTATTATATAGTAGTGTGTATTTCTAT-TATATACATATATATATATATTTATATATAGT
1 TATTACTATTATATAGTAGTGTATATTTCTATGTATAT--ATATATATATATA--TATATATAGT
*
95124436 ATTATTGTTTACTTTACTTTAA-TATTATTCTTATTAT
62 ATTATTGTTTA--TTACTTTAATTAATATTCTTATTAT
95124473 CATTATATCC
Statistics
Matches: 87, Mismatches: 8, Indels: 9
0.84 0.08 0.09
Matches are distributed among these distances:
121 5 0.06
122 28 0.32
123 13 0.15
125 32 0.37
127 9 0.10
ACGTcount: A:0.31, C:0.04, G:0.06, T:0.59
Consensus pattern (121 bp):
TATTACTATTATATAGTAGTGTATATTTCTATGTATATATATATATATATATATATATAGTATTA
TTGTTTATTACTTTAATTAATATTCTTATTATATTTGCTTTTTGTATTTCTATATT
Found at i:95129681 original size:6 final size:6
Alignment explanation
Indices: 95129672--95129712 Score: 66
Period size: 6 Copynumber: 7.0 Consensus size: 6
95129662 GGAGTTATAT
*
95129672 GGCAAT GGCAAA GGCAAA GGCAAA GGCAAA GGCAAA -GCAAA
1 GGCAAA GGCAAA GGCAAA GGCAAA GGCAAA GGCAAA GGCAAA
95129713 AAAAAAAAAG
Statistics
Matches: 34, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
5 5 0.15
6 29 0.85
ACGTcount: A:0.49, C:0.17, G:0.32, T:0.02
Consensus pattern (6 bp):
GGCAAA
Found at i:95130944 original size:66 final size:66
Alignment explanation
Indices: 95130844--95130970 Score: 236
Period size: 66 Copynumber: 1.9 Consensus size: 66
95130834 CATTCATATA
*
95130844 ATAACACATCTAGTTAGGAGCATTTGATTCATTTCAATCATAGCATCCTAATTATTTGACACATT
1 ATAACACATCTAGTTAGGAGCATTTGATTCATTTCAATCATAGCATCCTAATCATTTGACACATT
95130909 C
66 C
*
95130910 ATAACACATCTAGTTAGGAGCATTTGATTCATTTCGATCATAGCATCCTAATCATTTGACA
1 ATAACACATCTAGTTAGGAGCATTTGATTCATTTCAATCATAGCATCCTAATCATTTGACA
95130971 TAAGCATAGA
Statistics
Matches: 59, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
66 59 1.00
ACGTcount: A:0.33, C:0.20, G:0.12, T:0.35
Consensus pattern (66 bp):
ATAACACATCTAGTTAGGAGCATTTGATTCATTTCAATCATAGCATCCTAATCATTTGACACATT
C
Found at i:95131142 original size:43 final size:43
Alignment explanation
Indices: 95131034--95131974 Score: 524
Period size: 43 Copynumber: 21.7 Consensus size: 43
95131024 ATTCACAAGC
* * * * *
95131034 CTTAAGCCCCTAAGCAATAGGGTAACAG-GCTGAAGATTTATAGAT
1 CTTAACCCCCTAAGCAGTAGGGAAACAGATC-GAAGA-TGA-AGAT
* **
95131079 CTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGACGAAGGG
1 CTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGATGAAGAT
* * * * * * *
95131122 CTTAAACCCCTAATCGGTAGGGTAACAGACCGAA-TTGCAGAT
1 CTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGATGAAGAT
* *
95131164 CTTATCTCCCTAAGCAGTAGGGAAACAGATCGAAGATGAAGAT
1 CTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGATGAAGAT
* **
95131207 CTTAACCCCCTAAGCAGTAGGGAAACAGATC-AAGATGATGGG
1 CTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGATGAAGAT
* * * * * *
95131249 CTTTAACCCCCTAAGTAGTAGGGTAACA-AGCCAA-ATTTACA-AGC
1 C-TTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGA-TGA-AGA-T
* * * *
95131293 CTTAA-CCCCTAAGCAGTAGGGTAACAG-GCTAAAGATTTACAGAT
1 CTTAACCCCCTAAGCAGTAGGGAAACAGATC-GAAGA-TGA-AGAT
* *
95131337 CTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGACGAAGGGT
1 CTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGATGAA-GAT
* * * * * * *
95131381 CTTAAACCCCTAATCGGTAGGGTAACA-ACCGAA-TTGCAGAT
1 CTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGATGAAGAT
* *
95131422 CTTATCTCCCTAAGCAGTAGGGAAACAGATCGAAGATGAAGAT
1 CTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGATGAAGAT
* * * **
95131465 CTTAACCCCTTAAGCAGTAGGGAAATAGATCGAAGATGATGGG
1 CTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGATGAAGAT
* * * * *
95131508 CTTTAACCCCCTAAGCAGTAGGGTAACA-AGCCAA-ATTTATA-AGC
1 C-TTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGA-TGA-AGA-T
* * *
95131552 CTTAACCCCCTAAGCAGTAGGGTAACAG-GCTGAAGATTTACAGAT
1 CTTAACCCCCTAAGCAGTAGGGAAACAGATC-GAAGA-TGA-AGAT
* * **
95131597 CTTAACCCCCTAAGCAGTAGGGAAACAGATCAAAGATGATGGG
1 CTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGATGAAGAT
* * * * *
95131640 CTTTAA-CCCCTAAGCAGTAGGGTAACA-AGCTGAA-TTCACA-AGC
1 C-TTAACCCCCTAAGCAGTAGGGAAACAGATC-GAAGATGA-AGA-T
* * * * *
95131683 CTTAAACCCCTAAGCAGTAGGGTAACTG-GCTGAAGATTTACAGAT
1 CTTAACCCCCTAAGCAGTAGGGAAACAGATC-GAAGA-TGA-AGAT
** * * **
95131728 CTTAACCCCCTAAGCAGTAGGGAAACAGATAAAAAATGATGGG
1 CTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGATGAAGAT
* * * * *
95131771 CTTTAACCCCCTAAGCAGTAGGGTAACA-AGCCGAA-TTTACA-AA
1 C-TTAACCCCCTAAGCAGTAGGGAAACAGA-TCGAAGATGA-AGAT
* * * * * *
95131814 CTTTAAACCCCTAAGCAGTAGGGTAACAGGTTGAAGATTTACAAAT
1 C-TTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGA-TGA-AGAT
* * * * * *
95131860 CTTAACCCCCTAACCAGTAGGGTAACAGGTTGAA-TTTACAGAT
1 CTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGATGA-AGAT
* * * * **
95131903 CTTAACCCCTTAAGCAGTTGGGAAATAGATCGAAGATGATGGGC
1 CTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGATGA-AGAT
* * *
95131947 CTTAAACCCCTAAGTAGTAGGGTAACAG
1 CTTAACCCCCTAAGCAGTAGGGAAACAG
95131975 GCTGGAAATT
Statistics
Matches: 700, Mismatches: 153, Indels: 87
0.74 0.16 0.09
Matches are distributed among these distances:
41 23 0.03
42 80 0.11
43 303 0.43
44 126 0.18
45 161 0.23
46 7 0.01
ACGTcount: A:0.36, C:0.21, G:0.22, T:0.21
Consensus pattern (43 bp):
CTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGATGAAGAT
Found at i:95131716 original size:131 final size:132
Alignment explanation
Indices: 95131022--95131887 Score: 1104
Period size: 131 Copynumber: 6.6 Consensus size: 132
95131012 TAGAATCAGT
* * * *
95131022 GAATTCACAAGCCTTAAGCCCCTAAGCAATAGGGTAACAGGCTGAAGATTTATAGATCTTAACCC
1 GAATTTACAAGCCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACCC
* * * * *
95131087 CCTAAGCAGTAGGGAAACAGATCGAAGACGAAGGGC-TTAAACCCCTAATCGGTAGGGTAAC-AG
66 CCTAAGCAGTAGGGAAACAGATCGAAGATGATGGGCTTTAACCCCCTAAGCAGTAGGGTAACAAG
95131150 ACC
131 -CC
* * * * * *
95131153 GAA-TTGC-AGATCTT-ATCTCCCTAAGCAGTAGGGAAACA-GATCGAAGA-TGA-AGATCTTAA
1 GAATTTACAAG-CCTTAAAC-CCCTAAGCAGTAGGGTAACAGGCT-GAAGATTTACAGATCTTAA
*
95131212 CCCCCTAAGCAGTAGGGAAACAGATC-AAGATGATGGGCTTTAACCCCCTAAGTAGTAGGGTAAC
63 CCCCCTAAGCAGTAGGGAAACAGATCGAAGATGATGGGCTTTAACCCCCTAAGCAGTAGGGTAAC
95131276 AAGCC
128 AAGCC
* *
95131281 AAATTTACAAGCCTT-AACCCCTAAGCAGTAGGGTAACAGGCTAAAGATTTACAGATCTTAACCC
1 GAATTTACAAGCCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACCC
* * * * *
95131345 CCTAAGCAGTAGGGAAACAGATCGAAGACGAAGGG-TCTTAAACCCCTAATCGGTAGGGTAACAA
66 CCTAAGCAGTAGGGAAACAGATCGAAGATGATGGGCT-TTAACCCCCTAAGCAGTAGGGTAACAA
95131409 -CC
130 GCC
* * * * * *
95131411 GAA-TTGC-AGATCTT-ATCTCCCTAAGCAGTAGGGAAACA-GATCGAAGA-TGA-AGATCTTAA
1 GAATTTACAAG-CCTTAAAC-CCCTAAGCAGTAGGGTAACAGGCT-GAAGATTTACAGATCTTAA
* *
95131470 CCCCTTAAGCAGTAGGGAAATAGATCGAAGATGATGGGCTTTAACCCCCTAAGCAGTAGGGTAAC
63 CCCCCTAAGCAGTAGGGAAACAGATCGAAGATGATGGGCTTTAACCCCCTAAGCAGTAGGGTAAC
95131535 AAGCC
128 AAGCC
* * *
95131540 AAATTTATAAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACCC
1 GAATTTACAAGCCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACCC
*
95131605 CCTAAGCAGTAGGGAAACAGATCAAAGATGATGGGCTTTAA-CCCCTAAGCAGTAGGGTAACAAG
66 CCTAAGCAGTAGGGAAACAGATCGAAGATGATGGGCTTTAACCCCCTAAGCAGTAGGGTAACAAG
*
95131669 CT
131 CC
* *
95131671 GAATTCACAAGCCTTAAACCCCTAAGCAGTAGGGTAACTGGCTGAAGATTTACAGATCTTAACCC
1 GAATTTACAAGCCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACCC
** *
95131736 CCTAAGCAGTAGGGAAACAGATAAAAAATGATGGGCTTTAACCCCCTAAGCAGTAGGGTAACAAG
66 CCTAAGCAGTAGGGAAACAGATCGAAGATGATGGGCTTTAACCCCCTAAGCAGTAGGGTAACAAG
95131801 CC
131 CC
* * * *
95131803 GAATTTACAAACTTTAAACCCCTAAGCAGTAGGGTAACAGGTTGAAGATTTACAAATCTTAACCC
1 GAATTTACAAGCCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACCC
* *
95131868 CCTAACCAGTAGGGTAACAG
66 CCTAAGCAGTAGGGAAACAG
95131888 GTTGAATTTA
Statistics
Matches: 640, Mismatches: 71, Indels: 47
0.84 0.09 0.06
Matches are distributed among these distances:
127 10 0.02
128 152 0.24
129 39 0.06
130 122 0.19
131 166 0.26
132 151 0.24
ACGTcount: A:0.36, C:0.22, G:0.22, T:0.20
Consensus pattern (132 bp):
GAATTTACAAGCCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACCC
CCTAAGCAGTAGGGAAACAGATCGAAGATGATGGGCTTTAACCCCCTAAGCAGTAGGGTAACAAG
CC
Found at i:95131738 original size:88 final size:86
Alignment explanation
Indices: 95131203--95131987 Score: 297
Period size: 87 Copynumber: 9.0 Consensus size: 86
95131193 TCGAAGATGA
* * * * *** * *
95131203 AGATCTTAACCCCCTAAGCAGTAGGGAAAC-AGATCAAGATGATGGGCTTTAACCCCCTAAGTAG
1 AGATCTTAACCCCCTAAGCAGTAGGGTAACAAGATGAA-TTCACAAGCCTTAACCCCCTAAGCAG
* **
95131267 TAGGGTAACAAGCCAAATTTAC
65 TAGGGTAACAGGCTGAATTTAC
* * * * * *
95131289 A-AGCCTTAA-CCCCTAAGCAGTAGGGTAACAGGCTAAAGATTTAC-AGATCTTAACCCCCTAAG
1 AGA-TCTTAACCCCCTAAGCAGTAGGGTAACAAGAT-GA-ATTCACAAG-CCTTAACCCCCTAAG
* * *
95131351 CAGTAGGGAAACA-GATCGAA--GAC
62 CAGTAGGGTAACAGGCT-GAATTTAC
* * * * ** * * * *
95131374 GAAGGGTCTTAAACCCCTAATCGGTAGGGTAACAA-CCGAATT-GC-AGATCTTATCTCCCTAAG
1 --A-GATCTTAACCCCCTAAGCAGTAGGGTAACAAGATGAATTCACAAG-CCTTAACCCCCTAAG
* * * *
95131436 CAGTAGGGAAACA-GATCGAAGATGA-
62 CAGTAGGGTAACAGGCT-GAA-TTTAC
* * * *** *
95131461 AGATCTTAACCCCTTAAGCAGTAGGG-AA-ATAGATCGAAGATGATGGGCTTTAACCCCCTAAGC
1 AGATCTTAACCCCCTAAGCAGTAGGGTAACA-AGAT-GAA-TTCACAAGCCTTAACCCCCTAAGC
* ** *
95131524 AGTAGGGTAACAAGCCAAATTTAT
63 AGTAGGGTAACAGGCTGAATTTAC
* * * * *
95131548 A-AGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTAC-AGATCTTAACCCCCTAAG
1 AGA-TCTTAACCCCCTAAGCAGTAGGGTAACAAGATG-A-ATTCACAAG-CCTTAACCCCCTAAG
* * * *
95131611 CAGTAGGGAAACA-GATCAA---AG
62 CAGTAGGGTAACAGGCTGAATTTAC
* *
95131632 ATGATGGGCTTTAA-CCCCTAAGCAGTAGGGTAACAAGCTGAATTCACAAGCCTTAAACCCCTAA
1 A-GAT---C-TTAACCCCCTAAGCAGTAGGGTAACAAGATGAATTCACAAGCCTTAACCCCCTAA
*
95131696 GCAGTAGGGTAACTGGCTGAAGATTTAC
61 GCAGTAGGGTAACAGGCTG-A-ATTTAC
* * * * *** *
95131724 AGATCTTAACCCCCTAAGCAGTAGGGAAAC-AGATAAAAAATGATGGGCTTTAACCCCCTAAGCA
1 AGATCTTAACCCCCTAAGCAGTAGGGTAACAAGAT--GAATTCACAAGCCTTAACCCCCTAAGCA
* *
95131788 GTAGGGTAACAAGCCGAATTTAC
64 GTAGGGTAACAGGCTGAATTTAC
* * * * * ** *
95131811 A-AACTTTAAACCCCTAAGCAGTAGGGTAACAGGTTGAAGATTTACAAATCTTAACCCCCTAACC
1 AGATC-TTAACCCCCTAAGCAGTAGGGTAACAAGATG-A-ATTCACAAGCCTTAACCCCCTAAGC
*
95131875 AGTAGGGTAACAGGTTGAATTTAC
63 AGTAGGGTAACAGGCTGAATTTAC
* * * * *** * *
95131899 AGATCTTAACCCCTTAAGCAGTTGGG-AA-ATAGATCGAAGATGATGGGCCTTAAACCCCTAAGT
1 AGATCTTAACCCCCTAAGCAGTAGGGTAACA-AGAT-GAA-TTCACAAGCCTTAACCCCCTAAGC
*
95131962 AGTAGGGTAACAGGCTGGAAATTAC
63 AGTAGGGTAACAGGCT-GAATTTAC
95131987 A
1 A
95131988 AATTTCTTTT
Statistics
Matches: 524, Mismatches: 122, Indels: 104
0.70 0.16 0.14
Matches are distributed among these distances:
82 1 0.00
83 3 0.01
84 22 0.04
85 63 0.12
86 51 0.10
87 160 0.31
88 158 0.30
89 61 0.12
91 3 0.01
92 2 0.00
ACGTcount: A:0.36, C:0.21, G:0.22, T:0.21
Consensus pattern (86 bp):
AGATCTTAACCCCCTAAGCAGTAGGGTAACAAGATGAATTCACAAGCCTTAACCCCCTAAGCAGT
AGGGTAACAGGCTGAATTTAC
Found at i:95131779 original size:175 final size:172
Alignment explanation
Indices: 95131080--95131974 Score: 598
Period size: 175 Copynumber: 5.2 Consensus size: 172
95131070 TTTATAGATC
* * * * *
95131080 TTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGACGAAGGGCTTAAACCCCTAATCGGTAGGGT
1 TTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGATGAAGAGCTTTAACCCCTAAGCAGTAGGGT
* * * * * *
95131145 AAC-AGACCGAA-TTGCAGATCTTATCTCCCTAAGCAGTAGGGAAACAGATCGAAGA-TGAAGAT
66 AACAAG-CTGAATTTACAG-TCTTAACCCCCTAAGCAGTAGGGTAACAGAT-GAAGATTTAAGAT
*
95131207 CTTAACCCCCTAAGCAGTAGGGAAACAGATC-AAGATGATGGGCT
128 CTTAACCCCCTAAGCAGTAGGGAAACAGATCAAAAATGATGGGCT
* * * * * *
95131251 TTAACCCCCTAAGTAGTAGGGTAACA-AGCCAA-ATTTACA-AGCCTTAACCCCTAAGCAGTAGG
1 TTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGA-TGA-AGAGCTTTAACCCCTAAGCAGTAGG
* * * **
95131313 GTAACAGGCTAAAGATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGA-CGAA
64 GTAACAAGCT-GA-ATTTACAG-TCTTAACCCCCTAAGCAGTAGGGTAACAGAT-GAAGATTTAA
* * * * * ** * **
95131377 GGGTCTTAAACCCCTAATCGGTAGGGTAACA-A-CCGAATTGCA-GATC-
125 -GATCTTAACCCCCTAAGCAGTAGGGAAACAGATCAAAAATG-ATGGGCT
* * *
95131423 TTATCTCCCTAAGCAGTAGGGAAACAGATCGAAGATGAAGATC-TTAACCCCTTAAGCAGTAGGG
1 TTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGATGAAGAGCTTTAACCCC-TAAGCAGTAGGG
* * * ** *
95131487 -AA-ATAGATCGAAGATGATGGGCTTTAACCCCCTAAGCAGTAGGGTAACA-A-GCCAA-ATTTA
65 TAACA-AGCT-GAA-TTTACAGTC-TTAACCCCCTAAGCAGTAGGGTAACAGATG--AAGATTTA
* * * * * * * ** *
95131547 TA-AGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTA-CAGAT
124 -AGA-TCTTAACCCCCTAAGCAGTAGGGAAACA-GATCAAAAATGATGGGCT
* * *
95131597 CTTAACCCCCTAAGCAGTAGGGAAACAGATCAAAGATGATGGGCTTTAACCCCTAAGCAGTAGGG
1 -TTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGATGAAGAGCTTTAACCCCTAAGCAGTAGGG
* * * * *
95131662 TAACAAGCTGAATTCACAAGCCTTAAACCCCTAAGCAGTAGGGTAACTGGCTGAAGATTTACAGA
65 TAACAAGCTGAATTTAC-AGTCTTAACCCCCTAAGCAGTAGGGTAAC-AGATGAAGATTTA-AGA
*
95131727 TCTTAACCCCCTAAGCAGTAGGGAAACAGATAAAAAATGATGGGCT
127 TCTTAACCCCCTAAGCAGTAGGGAAACAGATCAAAAATGATGGGCT
* * * * *
95131773 TTAACCCCCTAAGCAGTAGGGTAACA-AGCCGAA-TTTACA-AACTTTAAACCCCTAAGCAGTAG
1 TTAACCCCCTAAGCAGTAGGGAAACAGA-TCGAAGATGA-AGAGCTTT-AACCCCTAAGCAGTAG
* * * * *
95131835 GGTAACAGGTTGAAGATTTACAAATCTTAACCCCCTAACCAGTAGGGTAACAGGTTG-A-ATTTA
63 GGTAACAAGCTG-A-ATTTAC-AGTCTTAACCCCCTAAGCAGTAGGGTAACA-GATGAAGATTTA
* * * * * *
95131898 CAGATCTTAACCCCTTAAGCAGTTGGGAAATAGATCGAAGATGATGGGCC
124 -AGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCAAAAATGATGGGCT
* * *
95131948 TTAAACCCCTAAGTAGTAGGGTAACAG
1 TTAACCCCCTAAGCAGTAGGGAAACAG
95131975 GCTGGAAATT
Statistics
Matches: 567, Mismatches: 114, Indels: 81
0.74 0.15 0.11
Matches are distributed among these distances:
169 2 0.00
170 30 0.05
171 58 0.10
172 67 0.12
173 72 0.13
174 63 0.11
175 189 0.33
176 49 0.09
177 37 0.07
ACGTcount: A:0.36, C:0.21, G:0.22, T:0.21
Consensus pattern (172 bp):
TTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGATGAAGAGCTTTAACCCCTAAGCAGTAGGGT
AACAAGCTGAATTTACAGTCTTAACCCCCTAAGCAGTAGGGTAACAGATGAAGATTTAAGATCTT
AACCCCCTAAGCAGTAGGGAAACAGATCAAAAATGATGGGCT
Found at i:95132105 original size:67 final size:68
Alignment explanation
Indices: 95131992--95132189 Score: 285
Period size: 67 Copynumber: 2.9 Consensus size: 68
95131982 ATTACAAATT
* *
95131992 TCTTTT-TCCCTGAAATGGCATTGGAGTGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAG-
1 TCTTTTCTTCCTGAAATGGCATTGGAGAGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAGC
*
95132055 AGGA
66 A-AA
* * *
95132059 TCTTTTCTTCCTGAAATGG-GTTGGAGCGGCTAAAAGCCACAACAGATCTCCTTGAAGTTTCAGC
1 TCTTTTCTTCCTGAAATGGCATTGGAGAGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAGC
95132123 AAA
66 AAA
* * *
95132126 CCTCTTCTTCCAGAAATGGCATTGGAGAGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAG
1 TCTTTTCTTCCTGAAATGGCATTGGAGAGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAG
95132190 TGGAAGAAGA
Statistics
Matches: 117, Mismatches: 11, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
67 64 0.55
68 53 0.45
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.27
Consensus pattern (68 bp):
TCTTTTCTTCCTGAAATGGCATTGGAGAGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAGC
AAA
Found at i:95132409 original size:132 final size:132
Alignment explanation
Indices: 95132244--95133029 Score: 1412
Period size: 132 Copynumber: 6.0 Consensus size: 132
95132234 GAGCAGACCA
* * *
95132244 AAGATAGTAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCGAAGATTTCAGCATGGCATCT
1 AAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCAAAGATTTCAGCATGGCATCC
95132309 CTGTGCTTATAGGGAACAAGTTGAAAACAGCAGATTTGGCATCCCTGTGCTTATAGGGAACAGAT
66 CTGTGCTTATAGGGAACAAGTTGAAAACAGCAGATTTGGCATCCCTGTGCTTATAGGGAACAGAT
95132374 CG
131 CG
*
95132376 AAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCAAAGATTTCAGAATGGCATCC
1 AAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCAAAGATTTCAGCATGGCATCC
* * *
95132441 CTATGCTTATAGGGAACAAGTTGAAAACAACAGATTTGGCAT-CCTGTGCTTATAGGGAACGGAT
66 CTGTGCTTATAGGGAACAAGTTGAAAACAGCAGATTTGGCATCCCTGTGCTTATAGGGAACAGAT
95132505 CG
131 CG
* * * * *
95132507 AAGATAGCAGATTTGGCATCCCTGTGCTTACGGTGAAGCAGATCGAAGATTTCAGCATGGCATCC
1 AAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCAAAGATTTCAGCATGGCATCC
95132572 CTGTGCTTATAGGGAACAAGTTGAAAACAGCAGATTTGGCATCCCTGTGCTTATAGGGAACAGAT
66 CTGTGCTTATAGGGAACAAGTTGAAAACAGCAGATTTGGCATCCCTGTGCTTATAGGGAACAGAT
95132637 CG
131 CG
*
95132639 AAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCGAAGATTTCAGCATGGCATCC
1 AAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCAAAGATTTCAGCATGGCATCC
*
95132704 CTGTGCTTATAGGGAACAAGTTGAAAACAGCAGATTTGGCATCCCTGTGCTTATAGGGAACAAAT
66 CTGTGCTTATAGGGAACAAGTTGAAAACAGCAGATTTGGCATCCCTGTGCTTATAGGGAACAGAT
95132769 CG
131 CG
95132771 AAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCAAAGATTTCAGCATGGCATCC
1 AAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCAAAGATTTCAGCATGGCATCC
* *
95132836 CTGTGCTTATAGGGAACAAGTTGAAAACATCAGATTTGGCATCCCTGTGCTTATAGGGAACAAAT
66 CTGTGCTTATAGGGAACAAGTTGAAAACAGCAGATTTGGCATCCCTGTGCTTATAGGGAACAGAT
95132901 CG
131 CG
95132903 AAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCAAAGATTTCAGCATGGCATCC
1 AAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCAAAGATTTCAGCATGGCATCC
*
95132968 CTGTGCTTATAGGGAACAAGTTGAAAACATCAGATTTGGCATCCCTGTGCTTATAGGGAACA
66 CTGTGCTTATAGGGAACAAGTTGAAAACAGCAGATTTGGCATCCCTGTGCTTATAGGGAACA
95133030 AGTTGAAAAC
Statistics
Matches: 630, Mismatches: 23, Indels: 2
0.96 0.04 0.00
Matches are distributed among these distances:
131 122 0.19
132 508 0.81
ACGTcount: A:0.31, C:0.19, G:0.24, T:0.26
Consensus pattern (132 bp):
AAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCAAAGATTTCAGCATGGCATCC
CTGTGCTTATAGGGAACAAGTTGAAAACAGCAGATTTGGCATCCCTGTGCTTATAGGGAACAGAT
CG
Found at i:95133046 original size:132 final size:132
Alignment explanation
Indices: 95132244--95133214 Score: 1377
Period size: 132 Copynumber: 7.4 Consensus size: 132
95132234 GAGCAGACCA
* *
95132244 AAGATAGTAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCGAAGATTTCAGCATGGCATCT
1 AAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCGAAGATTTCAGCATGGCATCC
95132309 CTGTGCTTATAGGGAACAAGTTGAAAACAGCAGATTTGGCATCCCTGTGCTTATAGGGAAC-AGA
66 CTGTGCTTATAGGGAACAAGTTGAAAACAGCAGATTTGGCATCCCTGTGCTTATAGGGAACAAG-
95132373 TCG
130 TCG
* *
95132376 AAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCAAAGATTTCAGAATGGCATCC
1 AAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCGAAGATTTCAGCATGGCATCC
* * *
95132441 CTATGCTTATAGGGAACAAGTTGAAAACAACAGATTTGGCAT-CCTGTGCTTATAGGGAAC-GGA
66 CTGTGCTTATAGGGAACAAGTTGAAAACAGCAGATTTGGCATCCCTGTGCTTATAGGGAACAAG-
95132504 TCG
130 TCG
* * * *
95132507 AAGATAGCAGATTTGGCATCCCTGTGCTTACGGTGAAGCAGATCGAAGATTTCAGCATGGCATCC
1 AAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCGAAGATTTCAGCATGGCATCC
95132572 CTGTGCTTATAGGGAACAAGTTGAAAACAGCAGATTTGGCATCCCTGTGCTTATAGGGAAC-AGA
66 CTGTGCTTATAGGGAACAAGTTGAAAACAGCAGATTTGGCATCCCTGTGCTTATAGGGAACAAG-
95132636 TCG
130 TCG
95132639 AAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCGAAGATTTCAGCATGGCATCC
1 AAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCGAAGATTTCAGCATGGCATCC
*
95132704 CTGTGCTTATAGGGAACAAGTTGAAAACAGCAGATTTGGCATCCCTGTGCTTATAGGGAACAAAT
66 CTGTGCTTATAGGGAACAAGTTGAAAACAGCAGATTTGGCATCCCTGTGCTTATAGGGAACAAGT
95132769 CG
131 CG
*
95132771 AAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCAAAGATTTCAGCATGGCATCC
1 AAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCGAAGATTTCAGCATGGCATCC
* *
95132836 CTGTGCTTATAGGGAACAAGTTGAAAACATCAGATTTGGCATCCCTGTGCTTATAGGGAACAAAT
66 CTGTGCTTATAGGGAACAAGTTGAAAACAGCAGATTTGGCATCCCTGTGCTTATAGGGAACAAGT
95132901 CG
131 CG
*
95132903 AAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCAAAGATTTCAGCATGGCATCC
1 AAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCGAAGATTTCAGCATGGCATCC
*
95132968 CTGTGCTTATAGGGAACAAGTTGAAAACATCAGATTTGGCATCCCTGTGCTTATAGGGAACAAGT
66 CTGTGCTTATAGGGAACAAGTTGAAAACAGCAGATTTGGCATCCCTGTGCTTATAGGGAACAAGT
*
95133033 TG
131 CG
* * * * * * * * * ** *
95133035 AAAACATCAGATTTGGCATCCCTGTGCTTATAGGGAA-CAAATCGAAGATAGCAG-ATCTGACAT
1 AAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCGAAGATTTCAGCA--TGGCAT
* * * * * ***
95133098 TCCTGTGCTTACAGTGAAGC-AGATCAAAATTTCAGCA--TGGCATCCCTGTGCTTATAGGGAAC
64 CCCTGTGCTTATAGGGAA-CAAGTTGAAAACAGCAG-ATTTGGCATCCCTGTGCTTATAGGGAAC
*
95133160 AAGTTG
127 AAGTCG
* * * * * * * * *
95133166 AAAACATCAGATTTGGCATCCCTGTGCTTATAGGGAA-CGGATCGAAGAT
1 AAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCGAAGAT
95133215 AGCAAATCTG
Statistics
Matches: 786, Mismatches: 47, Indels: 13
0.93 0.06 0.02
Matches are distributed among these distances:
130 1 0.00
131 213 0.27
132 569 0.72
133 3 0.00
ACGTcount: A:0.31, C:0.19, G:0.24, T:0.26
Consensus pattern (132 bp):
AAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCGAAGATTTCAGCATGGCATCC
CTGTGCTTATAGGGAACAAGTTGAAAACAGCAGATTTGGCATCCCTGTGCTTATAGGGAACAAGT
CG
Found at i:95133162 original size:131 final size:131
Alignment explanation
Indices: 95133004--95133256 Score: 479
Period size: 131 Copynumber: 1.9 Consensus size: 131
95132994 ACATCAGATT
95133004 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGATTTGGCATCCCTGTGCTTATAGG
1 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGATTTGGCATCCCTGTGCTTATAGG
*
95133069 GAACAAATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCAAAATTTCAGC
66 GAACAAATCGAAGATAGCAAATCTGACATTCCTGTGCTTACAGTGAAGCAGATCAAAATTTCAGC
95133134 A
131 A
95133135 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGATTTGGCATCCCTGTGCTTATAGG
1 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGATTTGGCATCCCTGTGCTTATAGG
**
95133200 GAACGGATCGAAGATAGCAAATCTGACATTCCTGTGCTTACAGTGAAGCAGATCAAA
66 GAACAAATCGAAGATAGCAAATCTGACATTCCTGTGCTTACAGTGAAGCAGATCAAA
95133257 GATAGCGGAT
Statistics
Matches: 119, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
131 119 1.00
ACGTcount: A:0.32, C:0.20, G:0.23, T:0.26
Consensus pattern (131 bp):
TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGATTTGGCATCCCTGTGCTTATAGG
GAACAAATCGAAGATAGCAAATCTGACATTCCTGTGCTTACAGTGAAGCAGATCAAAATTTCAGC
A
Found at i:95133234 original size:44 final size:44
Alignment explanation
Indices: 95132244--95133262 Score: 799
Period size: 44 Copynumber: 23.2 Consensus size: 44
95132234 GAGCAGACCA
* * * * *
95132244 AAGATAGTAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCG
1 AAGATAGCAGATCTGGCATCCCTGTGCTTATAGGGAA-CAGATCG
** * *
95132289 AAGATTTCAG--CATGGCATCTCTGTGCTTATAGGGAACA-AGTTG
1 AAGATAGCAGATC-TGGCATCCCTGTGCTTATAGGGAACAGA-TCG
* * *
95132332 AAAACAGCAGATTTGGCATCCCTGTGCTTATAGGGAACAGATCG
1 AAGATAGCAGATCTGGCATCCCTGTGCTTATAGGGAACAGATCG
* * * * *
95132376 AAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCA
1 AAGATAGCAGATCTGGCATCCCTGTGCTTATAGGGAA-CAGATCG
** * * *
95132421 AAGATTTCAGA-ATGGCATCCCTATGCTTATAGGGAACA-AGTTG
1 AAGATAGCAGATCTGGCATCCCTGTGCTTATAGGGAACAGA-TCG
* * * * *
95132464 AAAACAACAGATTTGGCAT-CCTGTGCTTATAGGGAACGGATCG
1 AAGATAGCAGATCTGGCATCCCTGTGCTTATAGGGAACAGATCG
* *
95132507 AAGATAGCAGATTTGGCATCCCTGTGCTTA-CGGTGAAGCAGATCG
1 AAGATAGCAGATCTGGCATCCCTGTGCTTATAGG-GAA-CAGATCG
** *
95132552 AAGATTTCAG--CATGGCATCCCTGTGCTTATAGGGAACA-AGTTG
1 AAGATAGCAGATC-TGGCATCCCTGTGCTTATAGGGAACAGA-TCG
* * *
95132595 AAAACAGCAGATTTGGCATCCCTGTGCTTATAGGGAACAGATCG
1 AAGATAGCAGATCTGGCATCCCTGTGCTTATAGGGAACAGATCG
* * * *
95132639 AAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCG
1 AAGATAGCAGATCTGGCATCCCTGTGCTTATAGGGAA-CAGATCG
** *
95132684 AAGATTTCAG--CATGGCATCCCTGTGCTTATAGGGAACA-AGTTG
1 AAGATAGCAGATC-TGGCATCCCTGTGCTTATAGGGAACAGA-TCG
* * * *
95132727 AAAACAGCAGATTTGGCATCCCTGTGCTTATAGGGAACAAATCG
1 AAGATAGCAGATCTGGCATCCCTGTGCTTATAGGGAACAGATCG
* * * * *
95132771 AAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCA
1 AAGATAGCAGATCTGGCATCCCTGTGCTTATAGGGAA-CAGATCG
** *
95132816 AAGATTTCAG--CATGGCATCCCTGTGCTTATAGGGAACA-AGTTG
1 AAGATAGCAGATC-TGGCATCCCTGTGCTTATAGGGAACAGA-TCG
* * * * *
95132859 AAAACATCAGATTTGGCATCCCTGTGCTTATAGGGAACAAATCG
1 AAGATAGCAGATCTGGCATCCCTGTGCTTATAGGGAACAGATCG
* * * * *
95132903 AAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCA
1 AAGATAGCAGATCTGGCATCCCTGTGCTTATAGGGAA-CAGATCG
** *
95132948 AAGATTTCAG--CATGGCATCCCTGTGCTTATAGGGAACA-AGTTG
1 AAGATAGCAGATC-TGGCATCCCTGTGCTTATAGGGAACAGA-TCG
* * * * *
95132991 AAAACATCAGATTTGGCATCCCTGTGCTTATAGGGAACA-AGTTG
1 AAGATAGCAGATCTGGCATCCCTGTGCTTATAGGGAACAGA-TCG
* * * * *
95133035 AAAACATCAGATTTGGCATCCCTGTGCTTATAGGGAACAAATCG
1 AAGATAGCAGATCTGGCATCCCTGTGCTTATAGGGAACAGATCG
* * * *
95133079 AAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATC-
1 AAGATAGCAGATCTGGCATCCCTGTGCTTATAGGGAA-CAGATCG
* ** *
95133123 AAAATTTCAG--CATGGCATCCCTGTGCTTATAGGGAACA-AGTTG
1 AAGATAGCAGATC-TGGCATCCCTGTGCTTATAGGGAACAGA-TCG
* * * * *
95133166 AAAACATCAGATTTGGCATCCCTGTGCTTATAGGGAACGGATCG
1 AAGATAGCAGATCTGGCATCCCTGTGCTTATAGGGAACAGATCG
* * * * * *
95133210 AAGATAGCAAATCTGACATTCCTGTGCTTACAGTGAAGCAGATCA
1 AAGATAGCAGATCTGGCATCCCTGTGCTTATAGGGAA-CAGATCG
95133255 AAGATAGC
1 AAGATAGC
95133263 GGATATCGCC
Statistics
Matches: 774, Mismatches: 156, Indels: 88
0.76 0.15 0.09
Matches are distributed among these distances:
41 1 0.00
42 10 0.01
43 129 0.17
44 531 0.69
45 103 0.13
ACGTcount: A:0.31, C:0.19, G:0.24, T:0.26
Consensus pattern (44 bp):
AAGATAGCAGATCTGGCATCCCTGTGCTTATAGGGAACAGATCG
Found at i:95133646 original size:22 final size:22
Alignment explanation
Indices: 95133606--95133647 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
95133596 TGGCCATCCA
*
95133606 CCTTGGCCACCAACTCCACCAC
1 CCTTGGCCACCAACACCACCAC
95133628 CCTTGGCCACCTAA-ACCACC
1 CCTTGGCCACC-AACACCACC
95133648 CCAACCACTC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 16 0.89
23 2 0.11
ACGTcount: A:0.24, C:0.52, G:0.10, T:0.14
Consensus pattern (22 bp):
CCTTGGCCACCAACACCACCAC
Found at i:95133747 original size:23 final size:21
Alignment explanation
Indices: 95133718--95133765 Score: 60
Period size: 23 Copynumber: 2.2 Consensus size: 21
95133708 TTTTTTGGTT
95133718 TTTTGGAGAAGGATTGTTCTTTG
1 TTTTGGAGAAGG-TT-TTCTTTG
* *
95133741 TTTTGGAGGAGGTTTTTTTTG
1 TTTTGGAGAAGGTTTTCTTTG
95133762 TTTT
1 TTTT
95133766 TTGGAGGTGT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
21 10 0.43
22 2 0.09
23 11 0.48
ACGTcount: A:0.12, C:0.02, G:0.29, T:0.56
Consensus pattern (21 bp):
TTTTGGAGAAGGTTTTCTTTG
Found at i:95133767 original size:23 final size:23
Alignment explanation
Indices: 95133706--95133820 Score: 98
Period size: 21 Copynumber: 5.0 Consensus size: 23
95133696 TGTTTTAGGT
*
95133706 GTTTTTTTGGTTTTTTGGAGAAG
1 GTTTTTTTTGTTTTTTGGAGAAG
* *
95133729 GATTGTTCTTTG--TTTTGGAGGAG
1 G-TT-TTTTTTGTTTTTTGGAGAAG
95133752 GTTTTTTTTGTTTTTT-G-G-AG
1 GTTTTTTTTGTTTTTTGGAGAAG
95133772 GTGTTTTTTTGTTTTTTGGAAAGAAG
1 GT-TTTTTTTGTTTTTTGG--AGAAG
* *
95133798 GTTATTTTTGTTTCTTGGA-AAG
1 GTTTTTTTTGTTTTTTGGAGAAG
95133820 G
1 G
95133821 CTAGTTTTTG
Statistics
Matches: 76, Mismatches: 6, Indels: 21
0.74 0.06 0.20
Matches are distributed among these distances:
20 4 0.05
21 21 0.28
22 8 0.11
23 17 0.22
24 2 0.03
25 20 0.26
26 4 0.05
ACGTcount: A:0.14, C:0.02, G:0.29, T:0.56
Consensus pattern (23 bp):
GTTTTTTTTGTTTTTTGGAGAAG
Found at i:95134135 original size:3 final size:3
Alignment explanation
Indices: 95134121--95134205 Score: 56
Period size: 3 Copynumber: 28.3 Consensus size: 3
95134111 GAGCTTTGTT
* *
95134121 TTA TTA TT- TTA TTA TTT TTA CTA TTA TT- TATA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA
95134165 TT- TCTCA TGTA TATA TT- TTA TT- TATA TTA TTA TTA -TA TTA T
1 TTA T-T-A T-TA T-TA TTA TTA TTA T-TA TTA TTA TTA TTA TTA T
95134206 ATATGCCCTC
Statistics
Matches: 66, Mismatches: 6, Indels: 20
0.72 0.07 0.22
Matches are distributed among these distances:
2 9 0.14
3 48 0.73
4 7 0.11
5 2 0.03
ACGTcount: A:0.29, C:0.04, G:0.01, T:0.66
Consensus pattern (3 bp):
TTA
Found at i:95135799 original size:10 final size:10
Alignment explanation
Indices: 95135784--95135839 Score: 78
Period size: 10 Copynumber: 5.6 Consensus size: 10
95135774 TAATTTTAGG
*
95135784 ATTTATTTTT
1 ATTTATCTTT
95135794 ATTTATCTTT
1 ATTTATCTTT
95135804 ATTTATCTTT
1 ATTTATCTTT
*
95135814 AATTATCTTT
1 ATTTATCTTT
95135824 ATTTAT-TTGT
1 ATTTATCTT-T
95135834 ATTTAT
1 ATTTAT
95135840 ATTTTAGAAT
Statistics
Matches: 42, Mismatches: 3, Indels: 2
0.89 0.06 0.04
Matches are distributed among these distances:
9 2 0.05
10 40 0.95
ACGTcount: A:0.23, C:0.05, G:0.02, T:0.70
Consensus pattern (10 bp):
ATTTATCTTT
Found at i:95136591 original size:17 final size:18
Alignment explanation
Indices: 95136558--95136591 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
95136548 TTTTCCTCAT
*
95136558 TTTAATTTCTGCAATTTA
1 TTTAATTTCTACAATTTA
95136576 TTTAATTTC-ACAATTT
1 TTTAATTTCTACAATTT
95136592 CAATTCACTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.29, C:0.12, G:0.03, T:0.56
Consensus pattern (18 bp):
TTTAATTTCTACAATTTA
Found at i:95137914 original size:18 final size:18
Alignment explanation
Indices: 95137887--95137922 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
95137877 GCTTGGAAGC
95137887 CTCCTCCGCTAGGTTGTT
1 CTCCTCCGCTAGGTTGTT
*
95137905 CTCCTTCGCTAGGTTGTT
1 CTCCTCCGCTAGGTTGTT
95137923 TTTTGTTGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.06, C:0.31, G:0.22, T:0.42
Consensus pattern (18 bp):
CTCCTCCGCTAGGTTGTT
Found at i:95146406 original size:183 final size:183
Alignment explanation
Indices: 95146067--95146592 Score: 763
Period size: 183 Copynumber: 2.9 Consensus size: 183
95146057 CTGTCATACC
* * *
95146067 CTCAGTTGTAGCTGGTTTCAGAGTCAATTCTAAACTCGGATTCAGTCTAGGCCCTTT-TGTCTTG
1 CTCAGTTGTAGTTGGTTTCAGAGTCAATTCTAAACTCGAACTCAGTCTAGGCCCTTTCT-TCTTG
* * *
95146131 TGTCTTGCTATATCTTGGGAAGTGCTGTGGTTGGTTGGTATATGCTCCTTGTTGATGCTGGGGGT
65 TATCTTGCTATATCTTGGGAAGTGCTGTGGTTGGTTGGTATGTGCTCCTTGGTGATGCTGGGGGT
* **
95146196 TGTAGTTGCAGTGATTTGATTTAGTTCATGGTTCAGGACATCTGCCAAAAGATA
130 TGTAGTTGCAGTGGTTTGACCTAGTTCATGGTTCAGGACATCTGCCAAAAGATA
* * * * *
95146250 CTCAGCTGTAGTTGGTTTTAGAGTCAATTCTAAACTTGTACTCAATCTAGGCCCTTTCTTCTTGT
1 CTCAGTTGTAGTTGGTTTCAGAGTCAATTCTAAACTCGAACTCAGTCTAGGCCCTTTCTTCTTGT
*
95146315 ATCTTGCTATATCTTGGGAAGTGCTGCGGTTGGTTGGTATGTGCTCCTTGGTGATGCTGGGGGTT
66 ATCTTGCTATATCTTGGGAAGTGCTGTGGTTGGTTGGTATGTGCTCCTTGGTGATGCTGGGGGTT
* * * * *
95146380 CTAGCTGCAGTGGTTCGACCTAGTTCATGTTTCAGGACATCTGCCAAATGATA
131 GTAGTTGCAGTGGTTTGACCTAGTTCATGGTTCAGGACATCTGCCAAAAGATA
* *
95146433 CTCAGTTGTGGTTGGTTTCAGAGTCAATTCTAAACTCGAACTCAGTCTAGG-CCTCTTCATCTTG
1 CTCAGTTGTAGTTGGTTTCAGAGTCAATTCTAAACTCGAACTCAGTCTAGGCCCT-TTCTTCTTG
* *
95146497 TATCTTGCTATATCTTGGGAAGTGCTGTTGG-TGGTTGGTATGCGCTCCTT-GTAGATGCCGGGG
65 TATCTTGCTATATCTTGGGAAGTGCTG-TGGTTGGTTGGTATGTGCTCCTTGGT-GATGCTGGGG
*
95146560 GTTGTAGTTGCAGTGGTTTGGCCTAGTTCATGG
128 GTTGTAGTTGCAGTGGTTTGACCTAGTTCATGG
95146593 CTTAAGACCT
Statistics
Matches: 305, Mismatches: 34, Indels: 8
0.88 0.10 0.02
Matches are distributed among these distances:
182 5 0.02
183 297 0.97
184 3 0.01
ACGTcount: A:0.17, C:0.18, G:0.27, T:0.37
Consensus pattern (183 bp):
CTCAGTTGTAGTTGGTTTCAGAGTCAATTCTAAACTCGAACTCAGTCTAGGCCCTTTCTTCTTGT
ATCTTGCTATATCTTGGGAAGTGCTGTGGTTGGTTGGTATGTGCTCCTTGGTGATGCTGGGGGTT
GTAGTTGCAGTGGTTTGACCTAGTTCATGGTTCAGGACATCTGCCAAAAGATA
Found at i:95153210 original size:11 final size:10
Alignment explanation
Indices: 95153194--95153252 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 10
95153184 ACTACTACAA
95153194 ACCATACAACC
1 ACCATAC-ACC
95153205 ACCATATCACC
1 ACCATA-CACC
*
95153216 ACCATTCAACC
1 ACCATAC-ACC
*
95153227 ACCTTAGCACC
1 ACCATA-CACC
95153238 ACCATACCACC
1 ACCATA-CACC
95153249 ACCA
1 ACCA
95153253 CATTACAATC
Statistics
Matches: 40, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
10 1 0.03
11 37 0.93
12 2 0.05
ACGTcount: A:0.37, C:0.47, G:0.02, T:0.14
Consensus pattern (10 bp):
ACCATACACC
Found at i:95153219 original size:22 final size:22
Alignment explanation
Indices: 95153194--95153252 Score: 82
Period size: 22 Copynumber: 2.7 Consensus size: 22
95153184 ACTACTACAA
*
95153194 ACCATACAACCACCATATCACC
1 ACCATACAACCACCATAGCACC
* *
95153216 ACCATTCAACCACCTTAGCACC
1 ACCATACAACCACCATAGCACC
*
95153238 ACCATACCACCACCA
1 ACCATACAACCACCA
95153253 CATTACAATC
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
22 31 1.00
ACGTcount: A:0.37, C:0.47, G:0.02, T:0.14
Consensus pattern (22 bp):
ACCATACAACCACCATAGCACC
Found at i:95155788 original size:18 final size:18
Alignment explanation
Indices: 95155761--95155803 Score: 77
Period size: 18 Copynumber: 2.4 Consensus size: 18
95155751 TAGGTTCAAG
*
95155761 TTAACTATGTTTCAACTA
1 TTAACCATGTTTCAACTA
95155779 TTAACCATGTTTCAACTA
1 TTAACCATGTTTCAACTA
95155797 TTAACCA
1 TTAACCA
95155804 AGTTGCAATG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.35, C:0.21, G:0.05, T:0.40
Consensus pattern (18 bp):
TTAACCATGTTTCAACTA
Found at i:95158972 original size:19 final size:19
Alignment explanation
Indices: 95158925--95159004 Score: 128
Period size: 19 Copynumber: 4.3 Consensus size: 19
95158915 CATATCATAT
*
95158925 CATATCATATCTAAAATTG
1 CATATCATATCTAAGATTG
95158944 --TATCATATCTAAGATTG
1 CATATCATATCTAAGATTG
*
95158961 CATATCACATCTAAGATTG
1 CATATCATATCTAAGATTG
95158980 CATATCATATCTAAGATTG
1 CATATCATATCTAAGATTG
95158999 CATATC
1 CATATC
95159005 CTTAAAGATT
Statistics
Matches: 56, Mismatches: 3, Indels: 4
0.89 0.05 0.06
Matches are distributed among these distances:
17 16 0.29
19 40 0.71
ACGTcount: A:0.38, C:0.17, G:0.09, T:0.36
Consensus pattern (19 bp):
CATATCATATCTAAGATTG
Found at i:95164072 original size:22 final size:22
Alignment explanation
Indices: 95164047--95164125 Score: 95
Period size: 22 Copynumber: 3.6 Consensus size: 22
95164037 CATCTAGATT
* * *
95164047 TGGTGTCATGACATCACATGGC
1 TGGTATCACGACAACACATGGC
* *
95164069 TGGTGTCGCGACAACACATGGC
1 TGGTATCACGACAACACATGGC
*
95164091 TGGTATCGCGACAACACATGGC
1 TGGTATCACGACAACACATGGC
*
95164113 TGGTATCATGACA
1 TGGTATCACGACA
95164126 TTGATGGTAG
Statistics
Matches: 51, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
22 51 1.00
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.23
Consensus pattern (22 bp):
TGGTATCACGACAACACATGGC
Found at i:95173389 original size:15 final size:15
Alignment explanation
Indices: 95173369--95173403 Score: 70
Period size: 15 Copynumber: 2.3 Consensus size: 15
95173359 AAATATATTT
95173369 TAGATCAAGATCCTG
1 TAGATCAAGATCCTG
95173384 TAGATCAAGATCCTG
1 TAGATCAAGATCCTG
95173399 TAGAT
1 TAGAT
95173404 TTATATTTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.34, C:0.17, G:0.20, T:0.29
Consensus pattern (15 bp):
TAGATCAAGATCCTG
Found at i:95174478 original size:22 final size:22
Alignment explanation
Indices: 95174444--95174488 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
95174434 CGTCCAGGTT
** *
95174444 TGGTGTCGTGACATCACATGGC
1 TGGTGTCACGACAACACATGGC
*
95174466 TGGTGTCACGACAAGACATGGC
1 TGGTGTCACGACAACACATGGC
95174488 T
1 T
95174489 AGTATCATGA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.22, C:0.22, G:0.31, T:0.24
Consensus pattern (22 bp):
TGGTGTCACGACAACACATGGC
Found at i:95174500 original size:22 final size:22
Alignment explanation
Indices: 95174459--95174500 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
95174449 TCGTGACATC
* *
95174459 ACATGGCTGGTGTCACGACAAG
1 ACATGGCTAGTATCACGACAAG
*
95174481 ACATGGCTAGTATCATGACA
1 ACATGGCTAGTATCACGACA
95174501 TTGATGGTCG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.31, C:0.21, G:0.26, T:0.21
Consensus pattern (22 bp):
ACATGGCTAGTATCACGACAAG
Found at i:95185365 original size:46 final size:49
Alignment explanation
Indices: 95185229--95185495 Score: 217
Period size: 46 Copynumber: 5.7 Consensus size: 49
95185219 AGGGTGTAAT
* *
95185229 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATCTC-TGT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCT-ACATCTCAT-A
* *
95185279 GCCGATGCCATGTCTCAGACATGGTCTTACACT-G-AC-ACATCTCATA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTACATCTCATA
* *
95185325 GCCGATG-CATGTCCCAGACAT-GTCTTACACTCGCT-TACATCTCGA-G
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTACATCTC-ATA
* * * *
95185371 GCTGATG-CATGTTCCAGACAT-GACTTACACTAGG-TCT-CGTCTCA-A
1 GCCGATGCCATGTCCCAGACATGGTCTTACACT-GGCTCTACATCTCATA
* * * * *
95185416 TGCCGTTGCCATGTCCTAGACATGGTCTTACACTGGCTCT-CATAAT-GTC
1 -GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTACAT-CTCATA
*
95185465 GCCGATG-CATGTCCTAGACAT-GTCTTACACT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACT
95185496 AGTGCACAAA
Statistics
Matches: 181, Mismatches: 23, Indels: 30
0.77 0.10 0.13
Matches are distributed among these distances:
44 10 0.06
45 15 0.08
46 69 0.38
47 32 0.18
48 21 0.12
49 2 0.01
50 32 0.18
ACGTcount: A:0.22, C:0.30, G:0.19, T:0.29
Consensus pattern (49 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTACATCTCATA
Found at i:95185438 original size:47 final size:46
Alignment explanation
Indices: 95185374--95185497 Score: 132
Period size: 47 Copynumber: 2.7 Consensus size: 46
95185364 TCTCGAGGCT
*
95185374 GATGCATGTTCC-AGACATGACTTACACTAGGTCTCGTC-TCAA-T-GCC
1 GATGCATG-TCCTAGACATGTCTTACACTAGG-CTC-TCAT-AAGTCGCC
*
95185420 GTTGCCATGTCCTAGACATGGTCTTACACT-GGCTCTCATAATGTCGCC
1 GATG-CATGTCCTAGACAT-GTCTTACACTAGGCTCTCATAA-GTCGCC
95185468 GATGCATGTCCTAGACATGTCTTACACTAG
1 GATGCATGTCCTAGACATGTCTTACACTAG
95185498 TGCACAAATG
Statistics
Matches: 67, Mismatches: 3, Indels: 15
0.79 0.04 0.18
Matches are distributed among these distances:
45 4 0.06
46 20 0.30
47 28 0.42
48 15 0.22
ACGTcount: A:0.23, C:0.27, G:0.20, T:0.30
Consensus pattern (46 bp):
GATGCATGTCCTAGACATGTCTTACACTAGGCTCTCATAAGTCGCC
Found at i:95185472 original size:94 final size:92
Alignment explanation
Indices: 95185226--95185497 Score: 286
Period size: 94 Copynumber: 2.9 Consensus size: 92
95185216 CATAGGGTGT
*
95185226 AATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATCTCTGTGCCGATGCCATG
1 AATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATGTC---GCCGATG-CATG
95185291 TCTCAGACATGGTCTTACACT--GACACATCTC
62 TC-CAGACAT-GTCTTACACTAGGACACATCTC
* * ** *
95185322 -ATAGCCGATG-CATGTCCCAGACAT-GTCTTACACTCGCT-TACATCTCGAGGCTGATGCATGT
1 AAT-GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCT-CATAT-GTCGCCGATGCATG-
* * * *
95185383 TCCAGACATGACTTACACTAGGTCTCGTCTC
62 TCCAGACATGTCTTACACTAGGACACATCTC
* *
95185414 AATGCCGTTGCCATGTCCTAGACATGGTCTTACACTGGCTCTCATAATGTCGCCGATGCATGTCC
1 AATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCAT-ATGTCGCCGATGCATGTCC
95185479 TAGACATGTCTTACACTAG
65 -AGACATGTCTTACACTAG
95185498 TGCACAAATG
Statistics
Matches: 146, Mismatches: 18, Indels: 26
0.77 0.09 0.14
Matches are distributed among these distances:
90 9 0.06
91 11 0.08
92 21 0.14
93 19 0.13
94 61 0.42
95 18 0.12
96 7 0.05
ACGTcount: A:0.22, C:0.29, G:0.19, T:0.29
Consensus pattern (92 bp):
AATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATGTCGCCGATGCATGTCCA
GACATGTCTTACACTAGGACACATCTC
Found at i:95186814 original size:17 final size:17
Alignment explanation
Indices: 95186794--95186826 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
95186784 GCAATGGTTG
95186794 AGAGAGGGAAAAAGAAT
1 AGAGAGGGAAAAAGAAT
*
95186811 AGAGAGGGGAAAAGAA
1 AGAGAGGGAAAAAGAA
95186827 GGTATTCGGT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.58, C:0.00, G:0.39, T:0.03
Consensus pattern (17 bp):
AGAGAGGGAAAAAGAAT
Found at i:95192299 original size:19 final size:19
Alignment explanation
Indices: 95192275--95192318 Score: 63
Period size: 19 Copynumber: 2.3 Consensus size: 19
95192265 GCTCTCCTTC
95192275 TCTTTCTTTCCTT-CTCTTT
1 TCTTTCTTTCCTTCCTC-TT
*
95192294 TCTTTCTTTCTTTCCTCTT
1 TCTTTCTTTCCTTCCTCTT
95192313 TCTTTC
1 TCTTTC
95192319 ACTTTCTCCC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 20 0.87
20 3 0.13
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (19 bp):
TCTTTCTTTCCTTCCTCTT
Found at i:95192551 original size:16 final size:15
Alignment explanation
Indices: 95192530--95192560 Score: 53
Period size: 16 Copynumber: 2.0 Consensus size: 15
95192520 CTTCATTTAC
95192530 TTCTTTATTACTTATT
1 TTCTTTATTA-TTATT
95192546 TTCTTTATTATTATT
1 TTCTTTATTATTATT
95192561 ATTACTTTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 5 0.33
16 10 0.67
ACGTcount: A:0.19, C:0.10, G:0.00, T:0.71
Consensus pattern (15 bp):
TTCTTTATTATTATT
Found at i:95192852 original size:3 final size:3
Alignment explanation
Indices: 95192844--95192873 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
95192834 TTGTTCTCAT
95192844 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
95192874 GTCTCTCTTG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:95202709 original size:45 final size:42
Alignment explanation
Indices: 95202567--95202723 Score: 149
Period size: 41 Copynumber: 3.7 Consensus size: 42
95202557 ATATTGTACA
* * * * * *
95202567 ATGCCAACGTCCCAAACGTGGTCTTACATGCTATCACATATCG
1 ATGCCAACGTCCCAGACATGGTCTTACACG-AACCAAATATCG
* * *
95202610 ATGCC-ACTGTTCCAGACAGGGTCTTACACGAATCAAATAT-G
1 ATGCCAAC-GTCCCAGACATGGTCTTACACGAACCAAATATCG
*
95202651 ATGCCAATGTCCCAGACATGGTCTTACACGTAACCATATATATCG
1 ATGCCAACGTCCCAGACATGGTCTTACACG-AACCA-A-ATATCG
95202696 ATGCCAACGTCCCAGA-AGTGGTCTTACA
1 ATGCCAACGTCCCAGACA-TGGTCTTACA
95202724 TGAGAATACA
Statistics
Matches: 95, Mismatches: 12, Indels: 12
0.80 0.10 0.10
Matches are distributed among these distances:
41 26 0.27
42 15 0.16
43 23 0.24
44 5 0.05
45 26 0.27
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.25
Consensus pattern (42 bp):
ATGCCAACGTCCCAGACATGGTCTTACACGAACCAAATATCG
Found at i:95216802 original size:89 final size:88
Alignment explanation
Indices: 95216651--95216889 Score: 302
Period size: 89 Copynumber: 2.7 Consensus size: 88
95216641 TACCACTATC
* * * * * * *
95216651 TGATTTGGCAGTTTATACTGCACGTCTATACCTCGGT-TTACCGCATTACATAGTACAGCTTATA
1 TGATCTGGCAGTTCATACTACATGTCTGTACCT-GGTCTT-CCGCATTGCACAGTACAGCTTATA
95216715 CGCTAGCCTTGCTGCATAATATATA
64 CGCTAGCCTTGCTGCATAATATATA
* * *
95216740 TGATTTGGCAGTTCATACTACATGTTTGTATCGC-GGTCTTCTGCATTGCACAGTACAGCTTATA
1 TGATCTGGCAGTTCATACTACATGTCTGTA-C-CTGGTCTTCCGCATTGCACAGTACAGCTTATA
*
95216804 CGCTAGCCTTGCTGCATAATATATC
64 CGCTAGCCTTGCTGCATAATATATA
* * *
95216829 TGATCTGGCAGTTCATACTACATGTCTGTACCTTGTCTTCCGCATGGCACCGTACAGCTTA
1 TGATCTGGCAGTTCATACTACATGTCTGTACCTGGTCTTCCGCATTGCACAGTACAGCTTA
95216890 CTGATAGCCC
Statistics
Matches: 131, Mismatches: 15, Indels: 9
0.85 0.10 0.06
Matches are distributed among these distances:
87 1 0.01
88 25 0.19
89 101 0.77
90 3 0.02
91 1 0.01
ACGTcount: A:0.23, C:0.24, G:0.18, T:0.35
Consensus pattern (88 bp):
TGATCTGGCAGTTCATACTACATGTCTGTACCTGGTCTTCCGCATTGCACAGTACAGCTTATACG
CTAGCCTTGCTGCATAATATATA
Found at i:95218004 original size:67 final size:66
Alignment explanation
Indices: 95217885--95218108 Score: 229
Period size: 67 Copynumber: 3.4 Consensus size: 66
95217875 GAGGTTTAAG
* * *
95217885 GTGTAAGACCATAGCTCAGCTATAGCAACCA-ATAGAGTCCGCCAAGACATTAAACATGGGATTA
1 GTGTAAGACCATAGCTCAGCTATGGCAA-CATATGGAGTCCGCCAGGACATTAAACATGGG-TTA
95217949 CAT
64 CAT
* * * * ** *
95217952 GTGTAAGACCATAGCTCGGCTATGGCAACATGTGGAGTCCACCAGGATATTAATTATAAGGTTAC
1 GTGTAAGACCATAGCTCAGCTATGGCAACATATGGAGTCCGCCAGGACATTAAACAT-GGGTTAC
95218017 AT
65 AT
* ** * * *
95218019 GCGTAAGACTGTAGCTCGGCTATGGCAACATATGGAGTTCGCTAGGACATTAAACATGAGGTTAC
1 GTGTAAGACCATAGCTCAGCTATGGCAACATATGGAGTCCGCCAGGACATTAAACATG-GGTTAC
95218084 AT
65 AT
*
95218086 AG-GTAAGA-TATAGCTCAGCTATG
1 -GTGTAAGACCATAGCTCAGCTATG
95218109 ACAATAGATA
Statistics
Matches: 130, Mismatches: 23, Indels: 9
0.80 0.14 0.06
Matches are distributed among these distances:
66 15 0.12
67 112 0.86
68 3 0.02
ACGTcount: A:0.33, C:0.19, G:0.24, T:0.25
Consensus pattern (66 bp):
GTGTAAGACCATAGCTCAGCTATGGCAACATATGGAGTCCGCCAGGACATTAAACATGGGTTACA
T
Found at i:95220605 original size:27 final size:27
Alignment explanation
Indices: 95220558--95220610 Score: 65
Period size: 27 Copynumber: 2.0 Consensus size: 27
95220548 TAAAATAGGA
*
95220558 AAAATAATATATTGGTAATAATAATAT
1 AAAATAATATATTGGTAATAAAAATAT
95220585 AAAATAATA-ATAT-GTACATAAAAATA
1 AAAATAATATAT-TGGTA-ATAAAAATA
95220611 CATATATATA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
26 5 0.22
27 18 0.78
ACGTcount: A:0.60, C:0.02, G:0.06, T:0.32
Consensus pattern (27 bp):
AAAATAATATATTGGTAATAAAAATAT
Found at i:95221514 original size:17 final size:17
Alignment explanation
Indices: 95221494--95221530 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
95221484 TTTTGGTAGG
95221494 TTTTTCTTT-TTCTTTTT
1 TTTTTCTTTGTT-TTTTT
95221511 TTTTTCTTTGTTTTTTT
1 TTTTTCTTTGTTTTTTT
95221528 TTT
1 TTT
95221531 GGGTTAGGTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 17 0.89
18 2 0.11
ACGTcount: A:0.00, C:0.08, G:0.03, T:0.89
Consensus pattern (17 bp):
TTTTTCTTTGTTTTTTT
Found at i:95222283 original size:88 final size:83
Alignment explanation
Indices: 95222176--95222753 Score: 308
Period size: 88 Copynumber: 7.0 Consensus size: 83
95222166 AACAGACATT
** * *
95222176 AAAAACAGAAATTGAAAATAGCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAG
1 AAAAACAGATTTTGAAAATACCTC-GCACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAG
95222241 TTGATTTTTTGAAACTTAACTTG
65 TTGATTTTTTGAAA---AAC-TG
* * * * *
95222264 AAAAGCAGATTTTGAAAATACCTCGATATGTGA-CTAGAGGTTCAACTCACCTCTCGCAATATGA
1 AAAAACAGATTTTGAAAATACCTCG-CACGTGAGCCA-AGGCTCAACTCACCTCTCGCAATATGA
*
95222328 GTTGA-TTTTTGAAAAACAG
64 GTTGATTTTTTGAAAAACTG
* * * * ** *** *
95222347 AAATTAAAAGA--CT-CAACTCAACTCTCGCA-GAAATTAAAAAGCTCAACTCACCTCTCGCAAT
1 AAA--AACAGATTTTGAAAAT--AC-CTCGCACGTGA-GCCAAGGCTCAACTCACCTCTCGCAAT
95222408 ATGAGTTGAATTTTTTTG-AAAA---
60 ATGAGTTG-A-TTTTTTGAAAAACTG
** * *
95222430 AAAAACAGAAATTGAAAATAGCTCAGCACGTGAGCCAAGGCTCAACTCACTTCTCGCAATATGAG
1 AAAAACAGATTTTGAAAATACCTC-GCACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAG
*
95222495 TTGA-TTTTTGAAAACAGAATTTG
65 TTGATTTTTTG--AA-A-AA-CTG
* * * * * *
95222518 AAAAACAGATTTTGAAAATACCTCGACATGTAACCCGAGGCTCAACTCACATCTCGCAATGTGAG
1 AAAAACAGATTTTGAAAATACCTCG-CACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAG
95222583 TTGATTTTTTTGAAAAA-T-
65 TTGA-TTTTTTGAAAAACTG
* *** *** * *
95222601 --ATA-A-ATTGAAAAAATACCTCAGTGTGTGATCTGAA-GCTCAACTCACCTCTCGCAATATGA
1 AAAAACAGATTTTGAAAATACCTC-GCACGTGAGC-CAAGGCTCAACTCACCTCTCGCAATATGA
95222661 GTTGATTTTTTTG--AAA--G
64 GTTGA-TTTTTTGAAAAACTG
* * * * * * *
95222678 ATAGA-A-A--TTGAAAATAGCTCAGCGCATGAGCCAAGGGTCAACTCACCTCTCGCAATATAAG
1 AAAAACAGATTTTGAAAATACCTC-GCACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAG
95222739 TTGATTTTTTGAAAA
65 TTGATTTTTTGAAAA
95222754 CAGAAATTGA
Statistics
Matches: 386, Mismatches: 67, Indels: 84
0.72 0.12 0.16
Matches are distributed among these distances:
76 9 0.02
77 47 0.12
78 2 0.01
79 64 0.17
80 3 0.01
81 11 0.03
82 38 0.10
83 14 0.04
84 41 0.11
85 10 0.03
86 6 0.02
87 20 0.05
88 115 0.30
90 6 0.02
ACGTcount: A:0.37, C:0.19, G:0.17, T:0.28
Consensus pattern (83 bp):
AAAAACAGATTTTGAAAATACCTCGCACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGT
TGATTTTTTGAAAAACTG
Found at i:95222380 original size:30 final size:30
Alignment explanation
Indices: 95222344--95222405 Score: 99
Period size: 30 Copynumber: 2.1 Consensus size: 30
95222334 TTTTGAAAAA
95222344 CAGAAATT-AAAAGACTCAACTCAACTCTCG
1 CAGAAATTAAAAAG-CTCAACTCAACTCTCG
*
95222374 CAGAAATTAAAAAGCTCAACTCACCTCTCG
1 CAGAAATTAAAAAGCTCAACTCAACTCTCG
95222404 CA
1 CA
95222406 ATATGAGTTG
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
30 25 0.83
31 5 0.17
ACGTcount: A:0.42, C:0.29, G:0.10, T:0.19
Consensus pattern (30 bp):
CAGAAATTAAAAAGCTCAACTCAACTCTCG
Found at i:95222524 original size:14 final size:14
Alignment explanation
Indices: 95222501--95222535 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
95222491 TGAGTTGATT
95222501 TTTG-AAAACAGAA
1 TTTGAAAAACAGAA
*
95222514 TTTGAAAAACAGAT
1 TTTGAAAAACAGAA
95222528 TTTGAAAA
1 TTTGAAAA
95222536 TACCTCGACA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
13 4 0.20
14 16 0.80
ACGTcount: A:0.51, C:0.06, G:0.14, T:0.29
Consensus pattern (14 bp):
TTTGAAAAACAGAA
Found at i:95222836 original size:72 final size:73
Alignment explanation
Indices: 95222553--95223085 Score: 388
Period size: 72 Copynumber: 6.8 Consensus size: 73
95222543 ACATGTAACC
* * * *
95222553 CGAGGCTCAACTCACATCTCGCAATGTGAGTTGATTTTTTTGAAAAATATAAATTGAAAAAATAC
1 CGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTG-AAAACAGAAATTG--AAAATAC
* *
95222618 CTCAGTGTGTGAT
62 CTCAGCGTGT-CT
* * *
95222631 CTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGATAGAAATTGAAAATAGC
1 C-GAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAA-ACAGAAATTGAAAATACC
*
95222696 TCAGCGCATGAGC-
63 TCAGCG--TG-TCT
* * *
95222709 CAAGGGTCAACTCACCTCTCGCAATATAAGTTGATTTTTTGAAAACAGAAATTGAAAATACCTCA
1 CGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAACAGAAATTGAAAATACCTCA
*
95222774 ACGTGTCT
66 GCGTGTCT
* ** * * *
95222782 TGAGGCTCAACTCATTTCTCACAATATGAGTTGA-ATTTTGAAAACAGAAATTGAAATTACCTCA
1 CGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAACAGAAATTGAAAATACCTCA
*
95222846 GCGTGTCC
66 GCGTGTCT
* *
95222854 CGAGGCTCAACTCACCTCTCGCAATATGAGTTAATTTTTTTTTTTTTTGAAATGCAGAAATTGAA
1 CGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--------TTTTTTGAAA-ACAGAAATTG--
** ** *
95222919 AAATGGAAATTGAAAATACCTCGACGTGTGAT
55 --A---AAA-T--ACCT-CAGC---GTGT-CT
* * *
95222951 CTGAGGCTCAACTCACCTCTCGCAATACGAGTTGACTTTTTTGACAACAGAAATTGAAATTACCT
1 C-GAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAAACAGAAATTGAAAATACCT
95223016 CAGCGTGTC-
64 CAGCGTGTCT
* *
95223025 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGGCAAAAATTGAAAA
1 C-GAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAA-ACAGAAATTGAAAA
95223086 ACGGAAATTG
Statistics
Matches: 364, Mismatches: 58, Indels: 69
0.74 0.12 0.14
Matches are distributed among these distances:
72 64 0.18
73 29 0.08
74 43 0.12
75 32 0.09
76 14 0.04
77 41 0.11
78 5 0.01
79 51 0.14
80 2 0.01
81 8 0.02
82 10 0.03
83 2 0.01
86 2 0.01
89 2 0.01
90 10 0.03
91 9 0.02
92 2 0.01
93 2 0.01
96 4 0.01
97 1 0.00
98 31 0.09
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.30
Consensus pattern (73 bp):
CGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAACAGAAATTGAAAATACCTCA
GCGTGTCT
Found at i:95223038 original size:172 final size:168
Alignment explanation
Indices: 95222750--95223228 Score: 702
Period size: 165 Copynumber: 2.9 Consensus size: 168
95222740 TGATTTTTTG
* * * ** * *
95222750 AAAACAGAAATTGAAAATACCTCAACGTGT-CT-TGAGGCTCAACTCATTTCTCACAATATGAGT
1 AAAACGGAAATTGAAAATACCTCGACGTGTGATCTGAGGCTCAACTCACCTCTCGCAATACGAGT
* * *
95222813 TGA-ATTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCA
66 TGATTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCA
* * *
95222877 ATATGAGTTAATTTTTTTTTTTTTTGAAATGCAGAAATTGA
131 ATATGAGTTGA---TTTTTTTTTTTGAAAGGCAAAAATTGA
*
95222918 AAAATGGAAATTGAAAATACCTCGACGTGTGATCTGAGGCTCAACTCACCTCTCGCAATACGAGT
1 AAAACGGAAATTGAAAATACCTCGACGTGTGATCTGAGGCTCAACTCACCTCTCGCAATACGAGT
95222983 TGACTTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGC
66 TGA-TTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGC
95223048 AATATGAGTTGA----TTTTTTTGAAAGGCAAAAATTGA
130 AATATGAGTTGATTTTTTTTTTTGAAAGGCAAAAATTGA
* * * *
95223083 AAAACGGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCACTCGCAATACGAGT
1 AAAACGGAAATTGAAAATACCTCGACGTGTGATCTGAGGCTCAACTCACCTCTCGCAATACGAGT
95223148 TGATTTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGC
66 TGA-TTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGC
95223213 AATATGAGTTGATTTT
130 AATATGAGTTGATTTT
95223229 GAAAAAGTAG
Statistics
Matches: 283, Mismatches: 20, Indels: 15
0.89 0.06 0.05
Matches are distributed among these distances:
165 157 0.55
168 27 0.10
169 1 0.00
170 30 0.11
172 68 0.24
ACGTcount: A:0.32, C:0.21, G:0.18, T:0.29
Consensus pattern (168 bp):
AAAACGGAAATTGAAAATACCTCGACGTGTGATCTGAGGCTCAACTCACCTCTCGCAATACGAGT
TGATTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCA
ATATGAGTTGATTTTTTTTTTTGAAAGGCAAAAATTGA
Found at i:95223047 original size:74 final size:75
Alignment explanation
Indices: 95222924--95223085 Score: 222
Period size: 74 Copynumber: 2.1 Consensus size: 75
95222914 TTGAAAAATG
*
95222924 GAAATTGAAAATACCTCGACGTGTGATCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGACTT
1 GAAATTGAAAATACCTCGACGTGT-ACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGACTT
95222989 TTTTGACAACA
65 TTTTGACAACA
* * *
95223000 GAAATTGAAATTACCTC-AGCGTGT-CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
1 GAAATTGAAAATACCTCGA-CGTGTACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGACTT
95223063 TTTTGA-AAGGCA
65 TTTTGACAA--CA
*
95223075 AAAATTGAAAA
1 GAAATTGAAAA
95223086 ACGGAAATTG
Statistics
Matches: 77, Mismatches: 6, Indels: 7
0.86 0.07 0.08
Matches are distributed among these distances:
73 2 0.03
74 42 0.55
75 12 0.16
76 21 0.27
ACGTcount: A:0.32, C:0.21, G:0.19, T:0.28
Consensus pattern (75 bp):
GAAATTGAAAATACCTCGACGTGTACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGACTTT
TTTGACAACA
Found at i:95223214 original size:74 final size:75
Alignment explanation
Indices: 95223089--95223228 Score: 219
Period size: 74 Copynumber: 1.9 Consensus size: 75
95223079 TTGAAAAACG
* *
95223089 GAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCACTCGCAATACGAGTTGATTT
1 GAAATTGAAAATACCTCAGCGTGT-ACCTGAGGCTCAACTCACCACTCGCAATACGAGTTGATTT
95223154 TTTTGACAACA
65 TTTTGACAACA
* * *
95223165 GAAATTGAAATTACCTCAGCGTGT-CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
1 GAAATTGAAAATACCTCAGCGTGTACCTGAGGCTCAACTCACCACTCGCAATACGAGTTGATTTT
95223229 GAAAAAGTAG
Statistics
Matches: 59, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
74 37 0.63
76 22 0.37
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.29
Consensus pattern (75 bp):
GAAATTGAAAATACCTCAGCGTGTACCTGAGGCTCAACTCACCACTCGCAATACGAGTTGATTTT
TTTGACAACA
Found at i:95223427 original size:72 final size:71
Alignment explanation
Indices: 95223293--95223458 Score: 244
Period size: 72 Copynumber: 2.3 Consensus size: 71
95223283 TGAACAACGT
* * * *
95223293 AAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
1 AAATTAAAAACAAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATAT
95223358 GAGTTG
66 GAGTTG
*
95223364 AAATTAAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATA
1 AAATTAAAA-ACAAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATA
95223429 TGAGTTG
65 TGAGTTG
**
95223436 ATTTTGAAAAACAAAAATT-AAAA
1 AAATT-AAAAACAAAAATTGAAAA
95223459 GGCTTAACTC
Statistics
Matches: 86, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
71 12 0.14
72 70 0.81
73 4 0.05
ACGTcount: A:0.42, C:0.21, G:0.15, T:0.22
Consensus pattern (71 bp):
AAATTAAAAACAAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATAT
GAGTTG
Found at i:95223601 original size:71 final size:71
Alignment explanation
Indices: 95223458--95223721 Score: 356
Period size: 70 Copynumber: 3.7 Consensus size: 71
95223448 AAAAATTAAA
* * * * *
95223458 AGGCTTAACTCACCTCTCGCAATATGAG-TCAATTT-AAAACATAAACTAAAAATACCTCAGCGT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTAAAAACAAAAATTAAAAATACCTCAGCGT
95223521 GCCCCG
66 GCCCCG
* * *
95223527 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAAACAAAAATTAAAAATACCTCAACGT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTAAAAACAAAAATTAAAAATACCTCAGCGT
* **
95223592 GTCTTG
66 GCCCCG
* *
95223598 AGGCTCAACTCATCTCTCGCAATATGAGTTGA--TTAAAACACAAAAATTGAAAATACCTCAGCG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTAAAA-ACAAAAATTAAAAATACCTCAGCG
95223661 TGCCCCG
65 TGCCCCG
*
95223668 AGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTAAAAAACAAAAATTAAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT-AAAAACAAAAATTAAAA
95223722 GGCTTAACTC
Statistics
Matches: 168, Mismatches: 21, Indels: 9
0.85 0.11 0.05
Matches are distributed among these distances:
69 31 0.18
70 61 0.36
71 58 0.35
72 14 0.08
73 4 0.02
ACGTcount: A:0.38, C:0.23, G:0.14, T:0.25
Consensus pattern (71 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTAAAAACAAAAATTAAAAATACCTCAGCGT
GCCCCG
Found at i:95223711 original size:263 final size:257
Alignment explanation
Indices: 95223296--95223888 Score: 1033
Period size: 257 Copynumber: 2.3 Consensus size: 257
95223286 ACAACGTAAA
* * * * * *
95223296 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
1 TTGAAAACAAAAATTAAAAATACCTCAACGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAG
95223361 TTGAAATTAAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCA
66 TTG--ATTAAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCA
*
95223426 ATATGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTTAACTCACCTCTCGCAATATGAGTCAAT
129 ATATGAGTTGATTTTAAAAAACAAAAATTAAAAGGCTTAACTCACCTCTCGCAATATGAGTCAAT
95223491 TTAAAACATAAACTAAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACTTCTCGCAATATGAGT
194 TT-----A-AAACTAAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACTTCTCGCAATATGAGT
95223556 TGATT
253 TGATT
95223561 TTGAAAACAAAAATTAAAAATACCTCAACGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAG
1 TTGAAAACAAAAATTAAAAATACCTCAACGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAG
95223626 TTGATTAAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAAT
66 TTGATTAAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAAT
95223691 ATGAGTTGATTTTAAAAAACAAAAATTAAAAGGCTTAACTCACCTCTCGCAATATGAGTCAATTT
131 ATGAGTTGATTTTAAAAAACAAAAATTAAAAGGCTTAACTCACCTCTCGCAATATGAGTCAATTT
*
95223756 AAAACTAAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATT
196 AAAACTAAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATT
*
95223818 TTGAAAACAACAATTAAAAATACCTCAACGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAG
1 TTGAAAACAAAAATTAAAAATACCTCAACGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAG
95223883 TTGATT
66 TTGATT
95223889 TTCCTTGAAA
Statistics
Matches: 319, Mismatches: 9, Indels: 8
0.95 0.03 0.02
Matches are distributed among these distances:
257 130 0.41
258 1 0.00
263 126 0.39
265 62 0.19
ACGTcount: A:0.37, C:0.23, G:0.15, T:0.26
Consensus pattern (257 bp):
TTGAAAACAAAAATTAAAAATACCTCAACGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAG
TTGATTAAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAAT
ATGAGTTGATTTTAAAAAACAAAAATTAAAAGGCTTAACTCACCTCTCGCAATATGAGTCAATTT
AAAACTAAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATT
Found at i:95223802 original size:63 final size:66
Alignment explanation
Indices: 95223721--95223883 Score: 181
Period size: 71 Copynumber: 2.4 Consensus size: 66
95223711 AAAAATTAAA
* * *
95223721 AGGCTTAACTCACCTCTCGCAATATGAGTCAATTT-AA-AAC-TAAAAATACCTCAGCGTGTCCC
1 AGGCTCAACTCACTTCTCGCAATATGAGTCAATTTAAACAACATAAAAATACCTCAACGTGTCCC
95223783 G
66 G
* *
95223784 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAAACAACAATTAAAAATACCTCAACGT
1 AGGCTCAACTCACTTCTCGCAATATGAG-TCAATTT--AAACAAC-A-TAAAAATACCTCAACGT
**
95223849 GTCTTG
61 GTCCCG
95223855 AGGCTCAACTCA-TCTCTCGCAATATGAGT
1 AGGCTCAACTCACT-TCTCGCAATATGAGT
95223884 TGATTTTCCT
Statistics
Matches: 84, Mismatches: 7, Indels: 11
0.82 0.07 0.11
Matches are distributed among these distances:
63 26 0.31
64 5 0.06
67 2 0.02
68 3 0.04
70 2 0.02
71 46 0.55
ACGTcount: A:0.33, C:0.25, G:0.15, T:0.28
Consensus pattern (66 bp):
AGGCTCAACTCACTTCTCGCAATATGAGTCAATTTAAACAACATAAAAATACCTCAACGTGTCCC
G
Found at i:95226128 original size:27 final size:25
Alignment explanation
Indices: 95226097--95226149 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 25
95226087 TGGCATTTGA
95226097 TTTCTTTTT-TTTTTCTTGTCCTTTTTT
1 TTTCTTTTTGTTTTT-TTGT--TTTTTT
95226124 TTTCTTTTTGTTTTTTTGTTTTTTT
1 TTTCTTTTTGTTTTTTTGTTTTTTT
95226149 T
1 T
95226150 CTTTTCATGA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
25 7 0.28
27 13 0.52
28 5 0.20
ACGTcount: A:0.00, C:0.09, G:0.06, T:0.85
Consensus pattern (25 bp):
TTTCTTTTTGTTTTTTTGTTTTTTT
Found at i:95226137 original size:16 final size:16
Alignment explanation
Indices: 95226097--95226154 Score: 62
Period size: 16 Copynumber: 3.5 Consensus size: 16
95226087 TGGCATTTGA
95226097 TTTCTTTTTTTTTTCTT
1 TTTC-TTTTTTTTTCTT
* *
95226114 GTCCTTTTTTTTTCTT
1 TTTCTTTTTTTTTCTT
* *
95226130 TTTGTTTTTTTGTTTTT
1 TTTCTTTTTTT-TTCTT
95226147 TTTCTTTT
1 TTTCTTTT
95226155 CATGACTGTC
Statistics
Matches: 33, Mismatches: 7, Indels: 2
0.79 0.17 0.05
Matches are distributed among these distances:
16 20 0.61
17 13 0.39
ACGTcount: A:0.00, C:0.10, G:0.05, T:0.84
Consensus pattern (16 bp):
TTTCTTTTTTTTTCTT
Found at i:95230511 original size:39 final size:39
Alignment explanation
Indices: 95230412--95230511 Score: 103
Period size: 39 Copynumber: 2.5 Consensus size: 39
95230402 TATGGTATTT
* * * * *
95230412 AATATATATATATATATATGTATATATAATAGTATTTAAG
1 AATATATACATA-ATATATATATATATAATAGCATTAAAA
* * *
95230452 AATATATACATAAGAAATATATA-ACTAATGGCATTAAAA
1 AATATATACATAATATATATATATA-TAATAGCATTAAAA
95230491 AATATATACATAATATATATA
1 AATATATACATAATATATATA
95230512 AAATACCTAA
Statistics
Matches: 49, Mismatches: 10, Indels: 3
0.79 0.16 0.05
Matches are distributed among these distances:
38 1 0.02
39 37 0.76
40 11 0.22
ACGTcount: A:0.53, C:0.04, G:0.06, T:0.37
Consensus pattern (39 bp):
AATATATACATAATATATATATATATAATAGCATTAAAA
Found at i:95231053 original size:16 final size:14
Alignment explanation
Indices: 95231034--95231068 Score: 52
Period size: 14 Copynumber: 2.4 Consensus size: 14
95231024 TTCTTCTTTT
95231034 TTTTTTTTGGGTTAGG
1 TTTTTTTT-GG-TAGG
95231050 TTTTTTTTGGTAGG
1 TTTTTTTTGGTAGG
95231064 TTTTT
1 TTTTT
95231069 CTTTTTCTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 9 0.47
15 2 0.11
16 8 0.42
ACGTcount: A:0.06, C:0.00, G:0.26, T:0.69
Consensus pattern (14 bp):
TTTTTTTTGGTAGG
Found at i:95231073 original size:16 final size:17
Alignment explanation
Indices: 95231033--95231073 Score: 52
Period size: 16 Copynumber: 2.5 Consensus size: 17
95231023 TTTCTTCTTT
95231033 TTTTTTTTTGGGTTAGG
1 TTTTTTTTTGGGTTAGG
95231050 -TTTTTTTT-GG-TAGG
1 TTTTTTTTTGGGTTAGG
95231064 TTTTTCTTTT
1 TTTTT-TTTT
95231074 TCTTTTTTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
14 4 0.18
15 6 0.27
16 12 0.55
ACGTcount: A:0.05, C:0.02, G:0.22, T:0.71
Consensus pattern (17 bp):
TTTTTTTTTGGGTTAGG
Found at i:95231083 original size:16 final size:15
Alignment explanation
Indices: 95231064--95231099 Score: 54
Period size: 16 Copynumber: 2.3 Consensus size: 15
95231054 TTTTGGTAGG
*
95231064 TTTTTCTTTTTCTTTT
1 TTTTTCTTTGT-TTTT
95231080 TTTTTCTTTGTTTTT
1 TTTTTCTTTGTTTTT
95231095 TTTTT
1 TTTTT
95231100 GGGTTAGGTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 9 0.47
16 10 0.53
ACGTcount: A:0.00, C:0.08, G:0.03, T:0.89
Consensus pattern (15 bp):
TTTTTCTTTGTTTTT
Found at i:95233224 original size:2 final size:2
Alignment explanation
Indices: 95233217--95233248 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
95233207 AAACTACATA
95233217 AT AT AT AT AT AT AT AT AT AT AT AT AT AT -T AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
95233249 AAGCATTAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 28 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:95234910 original size:11 final size:11
Alignment explanation
Indices: 95234888--95234998 Score: 60
Period size: 11 Copynumber: 9.7 Consensus size: 11
95234878 TGTTTTGCTG
*
95234888 TTATTTTTTTA
1 TTATTTTATTA
95234899 TTATTTTATTA
1 TTATTTTATTA
* * *
95234910 TCATTTCACTA
1 TTATTTTATTA
*
95234921 TTATGTTATTA
1 TTATTTTATTA
* *
95234932 CTATTTTGTTA
1 TTATTTTATTA
**
95234943 TTATTGTTTAGAAA
1 TTA-T-TTTA-TTA
* * *
95234957 TTATATAATTC
1 TTATTTTATTA
95234968 TTATTTTATTA
1 TTATTTTATTA
*
95234979 TTAATTTTGTTA
1 TT-ATTTTATTA
*
95234991 CTATTTTA
1 TTATTTTA
95234999 GAGGCATTTG
Statistics
Matches: 70, Mismatches: 26, Indels: 8
0.67 0.25 0.08
Matches are distributed among these distances:
11 50 0.71
12 12 0.17
13 4 0.06
14 4 0.06
ACGTcount: A:0.27, C:0.05, G:0.05, T:0.63
Consensus pattern (11 bp):
TTATTTTATTA
Found at i:95235142 original size:18 final size:18
Alignment explanation
Indices: 95235105--95235141 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
95235095 ATATTTTTAG
*
95235105 TATTTTTTATATAATATA
1 TATTTTTTATAAAATATA
95235123 TATTTTTTA-AAAAT-TA
1 TATTTTTTATAAAATATA
95235139 TAT
1 TAT
95235142 AAAAATTAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
16 5 0.28
17 4 0.22
18 9 0.50
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (18 bp):
TATTTTTTATAAAATATA
Found at i:95236261 original size:22 final size:22
Alignment explanation
Indices: 95236231--95236283 Score: 61
Period size: 22 Copynumber: 2.4 Consensus size: 22
95236221 AAAAAAAAAA
*
95236231 GTTAGTTTTCTCAATGTCTTGTT
1 GTTA-TTTTCTCAATGTCTTGCT
* *
95236254 GTTATTTTCTCATTGTTTTGCT
1 GTTATTTTCTCAATGTCTTGCT
*
95236276 GTCATTTT
1 GTTATTTT
95236284 ACTATTATAC
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
22 22 0.85
23 4 0.15
ACGTcount: A:0.11, C:0.13, G:0.15, T:0.60
Consensus pattern (22 bp):
GTTATTTTCTCAATGTCTTGCT
Found at i:95237571 original size:73 final size:73
Alignment explanation
Indices: 95237489--95237637 Score: 289
Period size: 73 Copynumber: 2.0 Consensus size: 73
95237479 AAATTGACCC
*
95237489 AAGTTTATATATAATATTAGATAGAGAGAAAGTGCAAAAACGAGGGATCTATTCGATGTGGAATG
1 AAGTTTATATATAATATTAGATAGAGAGAAAGTGCAAAAACGAGGGAACTATTCGATGTGGAATG
95237554 CAAAATCT
66 CAAAATCT
95237562 AAGTTTATATATAATATTAGATAGAGAGAAAGTGCAAAAACGAGGGAACTATTCGATGTGGAATG
1 AAGTTTATATATAATATTAGATAGAGAGAAAGTGCAAAAACGAGGGAACTATTCGATGTGGAATG
95237627 CAAAATCT
66 CAAAATCT
95237635 AAG
1 AAG
95237638 AGTAGCGGCA
Statistics
Matches: 75, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
73 75 1.00
ACGTcount: A:0.44, C:0.08, G:0.22, T:0.26
Consensus pattern (73 bp):
AAGTTTATATATAATATTAGATAGAGAGAAAGTGCAAAAACGAGGGAACTATTCGATGTGGAATG
CAAAATCT
Found at i:95238448 original size:2 final size:2
Alignment explanation
Indices: 95238441--95238477 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
95238431 TTATTGACTT
95238441 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
95238478 TATTTTCTTC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:95242198 original size:22 final size:21
Alignment explanation
Indices: 95242144--95242190 Score: 67
Period size: 22 Copynumber: 2.2 Consensus size: 21
95242134 TACTTGTTAA
* *
95242144 ATAAAAAATAATATTTATGAT
1 ATAAAAAATAATAATAATGAT
95242165 ATAAAAACATAATAATAATGAT
1 ATAAAAA-ATAATAATAATGAT
95242187 ATAA
1 ATAA
95242191 TATAATAAAG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 7 0.30
22 16 0.70
ACGTcount: A:0.62, C:0.02, G:0.04, T:0.32
Consensus pattern (21 bp):
ATAAAAAATAATAATAATGAT
Found at i:95243139 original size:6 final size:6
Alignment explanation
Indices: 95243130--95243155 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
95243120 CCTGACTATG
95243130 ACTGTT ACTGTT ACTGTT ACTGTT AC
1 ACTGTT ACTGTT ACTGTT ACTGTT AC
95243156 CCTACGGTGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.19, C:0.19, G:0.15, T:0.46
Consensus pattern (6 bp):
ACTGTT
Found at i:95245051 original size:41 final size:40
Alignment explanation
Indices: 95244986--95245068 Score: 130
Period size: 41 Copynumber: 2.0 Consensus size: 40
95244976 GGATGTCTAG
*
95244986 TTGTTAGGATGAAATAGATTTTTAATTAAATAAATTTCAT
1 TTGTTAGGATGAAATAGATTTTTAATTAAATAAATTTAAT
* *
95245026 TTGTTGGGATGAAAATAGGTTTTTAATTAAATAAATTTAAT
1 TTGTTAGGATG-AAATAGATTTTTAATTAAATAAATTTAAT
95245067 TT
1 TT
95245069 AGATTACCAC
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
40 10 0.26
41 29 0.74
ACGTcount: A:0.39, C:0.01, G:0.14, T:0.46
Consensus pattern (40 bp):
TTGTTAGGATGAAATAGATTTTTAATTAAATAAATTTAAT
Found at i:95245272 original size:31 final size:29
Alignment explanation
Indices: 95245200--95245273 Score: 78
Period size: 29 Copynumber: 2.5 Consensus size: 29
95245190 ACAAAGCGAT
* **
95245200 AACATAAGTGACTAAAATGTAACATTTCA
1 AACAAAAGTGACTAAAATGTAACATGGCA
*
95245229 AACACAAA-TGACTAAAATGTAATATAAGGCA
1 AACA-AAAGTGACTAAAATGTAACAT--GGCA
95245260 AACAAAAGTGACTA
1 AACAAAAGTGACTA
95245274 TTTTTGTAAT
Statistics
Matches: 37, Mismatches: 4, Indels: 6
0.79 0.09 0.13
Matches are distributed among these distances:
29 20 0.54
30 5 0.14
31 12 0.32
ACGTcount: A:0.53, C:0.14, G:0.12, T:0.22
Consensus pattern (29 bp):
AACAAAAGTGACTAAAATGTAACATGGCA
Found at i:95246973 original size:29 final size:31
Alignment explanation
Indices: 95246917--95246984 Score: 99
Period size: 29 Copynumber: 2.3 Consensus size: 31
95246907 ATTAAATTCT
*
95246917 AATTCT-AAAATATAAATAATAGAAAAATTA
1 AATTCTCAAAATATAAATAATAAAAAAATTA
95246947 AATTCTCAAAAT-TAAA-AATAAAAAAATTA
1 AATTCTCAAAATATAAATAATAAAAAAATTA
95246976 AATT-TCAAA
1 AATTCTCAAA
95246985 TTCATGAAAA
Statistics
Matches: 36, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
28 5 0.14
29 16 0.44
30 10 0.28
31 5 0.14
ACGTcount: A:0.63, C:0.06, G:0.01, T:0.29
Consensus pattern (31 bp):
AATTCTCAAAATATAAATAATAAAAAAATTA
Found at i:95247722 original size:19 final size:18
Alignment explanation
Indices: 95247700--95247761 Score: 63
Period size: 19 Copynumber: 3.2 Consensus size: 18
95247690 AAAATATAAA
*
95247700 ATTTGGAATTTTTATAAAT
1 ATTT-GAATTTTTAAAAAT
95247719 ATTTTGAA-TTTTAAAAATT
1 A-TTTGAATTTTTAAAAA-T
95247738 AATTTGAATTTTTGAAAAAT
1 -ATTTGAATTTTT-AAAAAT
95247758 ATTT
1 ATTT
95247762 TTTTTTGTAT
Statistics
Matches: 37, Mismatches: 1, Indels: 10
0.77 0.02 0.21
Matches are distributed among these distances:
18 8 0.22
19 15 0.41
20 9 0.24
21 5 0.14
ACGTcount: A:0.40, C:0.00, G:0.08, T:0.52
Consensus pattern (18 bp):
ATTTGAATTTTTAAAAAT
Found at i:95250515 original size:26 final size:27
Alignment explanation
Indices: 95250464--95250517 Score: 92
Period size: 26 Copynumber: 2.0 Consensus size: 27
95250454 ACATTAGCAA
*
95250464 CCAAAAGATTAGATTTTTTTTTTCATT
1 CCAAAAGATTAGATTTTTTTTCTCATT
95250491 CCAAAAGATTAGA-TTTTTTTCTCATT
1 CCAAAAGATTAGATTTTTTTTCTCATT
95250517 C
1 C
95250518 TCTTGATGAT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
26 13 0.50
27 13 0.50
ACGTcount: A:0.30, C:0.15, G:0.07, T:0.48
Consensus pattern (27 bp):
CCAAAAGATTAGATTTTTTTTCTCATT
Found at i:95250987 original size:3 final size:3
Alignment explanation
Indices: 95250979--95251018 Score: 80
Period size: 3 Copynumber: 13.3 Consensus size: 3
95250969 GCTTTGTGAG
95250979 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT T
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT T
95251019 GTCTGGTTCA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.68
Consensus pattern (3 bp):
TCT
Found at i:95252317 original size:3 final size:3
Alignment explanation
Indices: 95252309--95252358 Score: 100
Period size: 3 Copynumber: 16.7 Consensus size: 3
95252299 TCTGAACTCT
95252309 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
95252357 TT
1 TT
95252359 TTCAATTCTA
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 47 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:95262857 original size:17 final size:18
Alignment explanation
Indices: 95262835--95262912 Score: 65
Period size: 17 Copynumber: 4.4 Consensus size: 18
95262825 ATGGAAATAT
95262835 AATCTT-CA-ATGATATGC
1 AATCTTACATATGAT-TGC
*
95262852 AATCTTAGATATGATTGC
1 AATCTTACATATGATTGC
*
95262870 AATCTTAGATATGATAT--
1 AATCTTACATATGAT-TGC
* *
95262887 AATCTTAGATATGATATAC
1 AATCTTACATATGAT-TGC
95262906 AATCTTA
1 AATCTTA
95262913 GAAGATATGA
Statistics
Matches: 55, Mismatches: 1, Indels: 8
0.86 0.02 0.12
Matches are distributed among these distances:
17 23 0.42
18 19 0.35
19 13 0.24
ACGTcount: A:0.38, C:0.12, G:0.12, T:0.38
Consensus pattern (18 bp):
AATCTTACATATGATTGC
Found at i:95262874 original size:35 final size:36
Alignment explanation
Indices: 95262835--95262912 Score: 99
Period size: 35 Copynumber: 2.2 Consensus size: 36
95262825 ATGGAAATAT
*
95262835 AATCTT-CA-ATGATATGCAATCTTAGATATGAT-TGC
1 AATCTTACATATGATAT--AATCTTAGATATGATATAC
*
95262870 AATCTTAGATATGATATAATCTTAGATATGATATAC
1 AATCTTACATATGATATAATCTTAGATATGATATAC
95262906 AATCTTA
1 AATCTTA
95262913 GAAGATATGA
Statistics
Matches: 38, Mismatches: 2, Indels: 5
0.84 0.04 0.11
Matches are distributed among these distances:
35 21 0.55
36 10 0.26
37 7 0.18
ACGTcount: A:0.38, C:0.12, G:0.12, T:0.38
Consensus pattern (36 bp):
AATCTTACATATGATATAATCTTAGATATGATATAC
Found at i:95262920 original size:17 final size:19
Alignment explanation
Indices: 95262843--95262914 Score: 114
Period size: 18 Copynumber: 3.9 Consensus size: 19
95262833 ATAATCTTCA
95262843 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
95262862 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
95262880 ATGATAT--AATCTTAGAT
1 ATGATATGCAATCTTAGAT
*
95262897 ATGATATACAATCTTAGA
1 ATGATATGCAATCTTAGA
95262915 AGATATGATT
Statistics
Matches: 50, Mismatches: 0, Indels: 6
0.89 0.00 0.11
Matches are distributed among these distances:
17 17 0.34
18 18 0.36
19 15 0.30
ACGTcount: A:0.39, C:0.10, G:0.14, T:0.38
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:95262937 original size:42 final size:35
Alignment explanation
Indices: 95262843--95262914 Score: 108
Period size: 35 Copynumber: 2.0 Consensus size: 35
95262833 ATAATCTTCA
*
95262843 ATGATATGCAATCTTAGATATGATTGCAATCTTAGAT
1 ATGATAT--AATCTTAGATATGATTACAATCTTAGAT
95262880 ATGATATAATCTTAGATATGATATACAATCTTAGA
1 ATGATATAATCTTAGATATGAT-TACAATCTTAGA
95262915 AGATATGATT
Statistics
Matches: 33, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
35 15 0.45
36 11 0.33
37 7 0.21
ACGTcount: A:0.39, C:0.10, G:0.14, T:0.38
Consensus pattern (35 bp):
ATGATATAATCTTAGATATGATTACAATCTTAGAT
Found at i:95270317 original size:38 final size:40
Alignment explanation
Indices: 95270263--95270429 Score: 194
Period size: 46 Copynumber: 3.9 Consensus size: 40
95270253 TCTGATATGA
95270263 AATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTG
1 AATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTG
95270303 -A-GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATG
1 AATGTGTAAGACCATGGTTGAAAGATACCATGGCAACC-----TG
*
95270346 AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTG
1 -AATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTG
*
95270387 ATATGAAATGAACAAGACCATGGTTGAAAGATACCATGGCAAC
1 A-ATG---TG--TAAGACCATGGTTGAAAGATACCATGGCAAC
95270430 ATGACAGAAA
Statistics
Matches: 111, Mismatches: 2, Indels: 22
0.82 0.01 0.16
Matches are distributed among these distances:
38 35 0.32
39 1 0.01
40 1 0.01
41 5 0.05
43 2 0.02
44 2 0.02
45 1 0.01
46 64 0.58
ACGTcount: A:0.38, C:0.16, G:0.25, T:0.22
Consensus pattern (40 bp):
AATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTG
Found at i:95270371 original size:46 final size:46
Alignment explanation
Indices: 95270306--95270478 Score: 240
Period size: 46 Copynumber: 3.8 Consensus size: 46
95270296 CAACCTGAGT
* *
95270306 GTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGT
1 GTAAGACCATGGTTGAAAGATACCATGGCAACATGATATGAAATGA
*
95270352 GTAAGACCATGGTTGAAAGATACCATGGCAACGTGATATGAAATGA
1 GTAAGACCATGGTTGAAAGATACCATGGCAACATGATATGAAATGA
** *
95270398 ACAAGACCATGGTTGAAAGATACCATGGCAACATGACA-GAAAATGA
1 GTAAGACCATGGTTGAAAGATACCATGGCAACATGATATG-AAATGA
* * * *
95270444 GTAAGACCATAGTTGAAAGACACTATGGCATCATG
1 GTAAGACCATGGTTGAAAGATACCATGGCAACATG
95270479 TCAAAGATAA
Statistics
Matches: 114, Mismatches: 12, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
45 1 0.01
46 113 0.99
ACGTcount: A:0.40, C:0.16, G:0.24, T:0.21
Consensus pattern (46 bp):
GTAAGACCATGGTTGAAAGATACCATGGCAACATGATATGAAATGA
Found at i:95273938 original size:207 final size:207
Alignment explanation
Indices: 95273583--95274496 Score: 1499
Period size: 207 Copynumber: 4.4 Consensus size: 207
95273573 CAGATCGAAA
* * * *
95273583 ACATAGCTGATTTGGCTTTCACATGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGT
1 ACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAGTCTAAGATGATTTGGCATCTCTGT
* *
95273648 ATTGTCAGAGAACAAATCGAAGTTTGACGTCTCCATATTCGACGGAGGGCAGACATATAGCAGAT
66 ATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGCAGAT
95273713 CTGGCCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGG
131 CTGGCCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGG
95273778 AACAAATCAAAG
196 AACAAATCAAAG
* * *
95273790 ACATAGCTGATTTGGCTTTCACGTGTTTACATTGAAGTAAGTTTAAGATGATTTGGCATCTCTGT
1 ACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAGTCTAAGATGATTTGGCATCTCTGT
* *
95273855 ATTGTCAGAGAACAAATAGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGCAAAT
66 ATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGCAGAT
* *
95273920 CTGGCCTTCAGATGTTTATACTGAAGCAAAATCCAAGATGGTTTGGCATCCTTGTGTTTACAAGG
131 CTGGCCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGG
*
95273985 AACAAATCGAAG
196 AACAAATCAAAG
95273997 ACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAGTCTAAGATGATTTGGCATCTCTGT
1 ACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAGTCTAAGATGATTTGGCATCTCTGT
* *
95274062 ATTGTCAGAGAAGAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGTAGACACATAGCAGAT
66 ATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGCAGAT
*
95274127 CTGGCCTTCAGATGTTTATACTGAAGTAAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGG
131 CTGGCCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGG
*
95274192 AACAAATCGAAG
196 AACAAATCAAAG
* *
95274204 ACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGAAAGTCTAAGATAATTTGGCATCTCTGT
1 ACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAGTCTAAGATGATTTGGCATCTCTGT
* * * *
95274269 ATTGTCAGAGAACAAGTCGAAGTTTGGAGTCTCCATATTCGACGGAGGACAGACATATAGCAGAT
66 ATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGCAGAT
** * * *
95274334 CTAACCTTCAGATGATTAGACTGAAGC-AGATCCAAGATGGTTTGGTATCCTTGTGCTTACAAGG
131 CTGGCCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGG
*
95274398 AGCAAATCAAAG
196 AACAAATCAAAG
* * *
95274410 ACATAGCTGATTTGGCTTTCGCGTGTTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGT
1 ACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAGTCTAAGATGATTTGGCATCTCTGT
*
95274475 ATTGTCA-ATGAACAAATTGAAG
66 ATTGTCAGA-GAACAAATCGAAG
95274497 AAGCAGATTT
Statistics
Matches: 659, Mismatches: 47, Indels: 3
0.93 0.07 0.00
Matches are distributed among these distances:
205 1 0.00
206 124 0.19
207 534 0.81
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.29
Consensus pattern (207 bp):
ACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAGTCTAAGATGATTTGGCATCTCTGT
ATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGCAGAT
CTGGCCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGG
AACAAATCAAAG
Found at i:95274876 original size:17 final size:18
Alignment explanation
Indices: 95274863--95274988 Score: 93
Period size: 19 Copynumber: 6.9 Consensus size: 18
95274853 TAATCTTCAA
95274863 TGATATGCAATCTTAGATG
1 TGATATGCAATCTTAGA-G
95274882 TGATATGCAATCTTAGA-
1 TGATATGCAATCTTAGAG
* *
95274899 T-ATGATACAATCTTAGATA
1 TGAT-ATGCAATCTTAGA-G
95274918 TGAT-TGCAATCTTAGA-
1 TGATATGCAATCTTAGAG
* *
95274934 T-ATGATACAATCTTAGATA
1 TGAT-ATGCAATCTTAGA-G
*
95274953 TGAT-TGCAATCTTAGAATA
1 TGATATGCAATCTTAG-A-G
*
95274972 TGATATACAATCTTAGA
1 TGATATGCAATCTTAGA
95274989 AGATATGATT
Statistics
Matches: 91, Mismatches: 5, Indels: 22
0.77 0.04 0.19
Matches are distributed among these distances:
15 2 0.02
16 3 0.03
17 24 0.26
18 21 0.23
19 27 0.30
20 14 0.15
ACGTcount: A:0.37, C:0.11, G:0.15, T:0.37
Consensus pattern (18 bp):
TGATATGCAATCTTAGAG
Found at i:95274887 original size:19 final size:19
Alignment explanation
Indices: 95274862--95274988 Score: 185
Period size: 17 Copynumber: 6.9 Consensus size: 19
95274852 ATAATCTTCA
95274862 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
*
95274881 GTGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
95274900 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
95274917 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
95274935 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
95274952 ATGAT-TGCAATCTTAGAAT
1 ATGATATGCAATCTTAG-AT
*
95274971 ATGATATACAATCTTAGA
1 ATGATATGCAATCTTAGA
95274989 AGATATGATT
Statistics
Matches: 98, Mismatches: 3, Indels: 14
0.85 0.03 0.12
Matches are distributed among these distances:
17 32 0.33
18 25 0.26
19 31 0.32
20 10 0.10
ACGTcount: A:0.38, C:0.11, G:0.15, T:0.36
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:95274932 original size:35 final size:35
Alignment explanation
Indices: 95274870--95274988 Score: 193
Period size: 35 Copynumber: 3.3 Consensus size: 35
95274860 CAATGATATG
*
95274870 CAATCTTAGATGTGATATGCAATCTTAGATATGATA
1 CAATCTTAGATATGAT-TGCAATCTTAGATATGATA
95274906 CAATCTTAGATATGATTGCAATCTTAGATATGATA
1 CAATCTTAGATATGATTGCAATCTTAGATATGATA
95274941 CAATCTTAGATATGATTGCAATCTTAGAATATGATATA
1 CAATCTTAGATATGATTGCAATCTTAG-ATATG--ATA
95274979 CAATCTTAGA
1 CAATCTTAGA
95274989 AGATATGATT
Statistics
Matches: 79, Mismatches: 1, Indels: 4
0.94 0.01 0.05
Matches are distributed among these distances:
35 46 0.58
36 20 0.25
38 13 0.16
ACGTcount: A:0.38, C:0.12, G:0.14, T:0.36
Consensus pattern (35 bp):
CAATCTTAGATATGATTGCAATCTTAGATATGATA
Found at i:95276002 original size:24 final size:24
Alignment explanation
Indices: 95275970--95276045 Score: 82
Period size: 24 Copynumber: 3.2 Consensus size: 24
95275960 AAGAATGTGA
* * *
95275970 AAAGTTTAAGGAAGATTAAAAGTT
1 AAAGATTAAGGAAGATGAAAAGTG
*
95275994 AAATG-TTAAAGAAGATGAAAAGTG
1 AAA-GATTAAGGAAGATGAAAAGTG
* *
95276018 GAAGATTAAGGAAGATGAAAGGTG
1 AAAGATTAAGGAAGATGAAAAGTG
95276042 AAAG
1 AAAG
95276046 GTTGAACATC
Statistics
Matches: 43, Mismatches: 7, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
23 1 0.02
24 41 0.95
25 1 0.02
ACGTcount: A:0.51, C:0.00, G:0.28, T:0.21
Consensus pattern (24 bp):
AAAGATTAAGGAAGATGAAAAGTG
Found at i:95278319 original size:16 final size:17
Alignment explanation
Indices: 95278293--95278324 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
95278283 ATAATTCATG
95278293 CCAATCTATTTATTTTT
1 CCAATCTATTTATTTTT
95278310 CCAA-CTATTTATTTT
1 CCAATCTATTTATTTT
95278325 CTCCCCCTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.25, C:0.19, G:0.00, T:0.56
Consensus pattern (17 bp):
CCAATCTATTTATTTTT
Found at i:95278730 original size:30 final size:30
Alignment explanation
Indices: 95278696--95278756 Score: 113
Period size: 30 Copynumber: 2.0 Consensus size: 30
95278686 ATTGGAGACG
*
95278696 TTTGATTAATGATTCAGCAAAATTTTTCAT
1 TTTGATTAATGATTCAGCAAAATTTGTCAT
95278726 TTTGATTAATGATTCAGCAAAATTTGTCAT
1 TTTGATTAATGATTCAGCAAAATTTGTCAT
95278756 T
1 T
95278757 ATCACAAACA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.33, C:0.10, G:0.11, T:0.46
Consensus pattern (30 bp):
TTTGATTAATGATTCAGCAAAATTTGTCAT
Found at i:95279449 original size:33 final size:34
Alignment explanation
Indices: 95279383--95279449 Score: 91
Period size: 33 Copynumber: 2.0 Consensus size: 34
95279373 TATGTTATGC
* * * *
95279383 TTGAAAGTTTTGTTAAGGGATTAGTTATGTTTAT
1 TTGAAAGTTTTGTTAAGGAACTACTTATATTTAT
95279417 TTGAAAG-TTTGTTAAGGAACTACTTATATTTAT
1 TTGAAAGTTTTGTTAAGGAACTACTTATATTTAT
95279450 ATTAAATTTA
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
33 22 0.76
34 7 0.24
ACGTcount: A:0.30, C:0.03, G:0.19, T:0.48
Consensus pattern (34 bp):
TTGAAAGTTTTGTTAAGGAACTACTTATATTTAT
Found at i:95280033 original size:17 final size:18
Alignment explanation
Indices: 95280000--95280036 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
95279990 TGTGTTATAA
95280000 GAAGATGAAAAGTTTAAG
1 GAAGATGAAAAGTTTAAG
* *
95280018 GAAGATTAAAAGTTAAAG
1 GAAGATGAAAAGTTTAAG
95280036 G
1 G
95280037 TTAAAGAAGA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.51, C:0.00, G:0.27, T:0.22
Consensus pattern (18 bp):
GAAGATGAAAAGTTTAAG
Found at i:95280035 original size:24 final size:24
Alignment explanation
Indices: 95280008--95280082 Score: 96
Period size: 24 Copynumber: 3.1 Consensus size: 24
95279998 AAGAAGATGA
* * * *
95280008 AAAGTTTAAGGAAGATTAAAAGTT
1 AAAGGTTAAAGAAGATGAAAAGTG
95280032 AAAGGTTAAAGAAGATGAAAAGTG
1 AAAGGTTAAAGAAGATGAAAAGTG
* *
95280056 AAAGGTTAAAGGAGATGAAATGTG
1 AAAGGTTAAAGAAGATGAAAAGTG
95280080 AAA
1 AAA
95280083 TGTTGAATAT
Statistics
Matches: 45, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 45 1.00
ACGTcount: A:0.52, C:0.00, G:0.27, T:0.21
Consensus pattern (24 bp):
AAAGGTTAAAGAAGATGAAAAGTG
Found at i:95287841 original size:2 final size:2
Alignment explanation
Indices: 95287834--95287858 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
95287824 TGGTAGGCTG
95287834 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
95287859 CCATTTTGTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:95288346 original size:28 final size:28
Alignment explanation
Indices: 95288314--95288367 Score: 81
Period size: 28 Copynumber: 1.9 Consensus size: 28
95288304 TTTTTCGTCT
95288314 ATATTATTTCGATTATTAATTTGATAGG
1 ATATTATTTCGATTATTAATTTGATAGG
* * *
95288342 ATATTATTTTGGTTATTAGTTTGATA
1 ATATTATTTCGATTATTAATTTGATA
95288368 ATGCATTATT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.30, C:0.02, G:0.15, T:0.54
Consensus pattern (28 bp):
ATATTATTTCGATTATTAATTTGATAGG
Found at i:95295418 original size:29 final size:29
Alignment explanation
Indices: 95295382--95295449 Score: 75
Period size: 29 Copynumber: 2.4 Consensus size: 29
95295372 ATATACAAAC
* *
95295382 ATAT-AAAATAATAATTAAATGATGCATG
1 ATATAAAAATAATAATCAAATAATGCATG
* *
95295410 ATATAAAAACAATAATCAAATAATGTATG
1 ATATAAAAATAATAATCAAATAATGCATG
* *
95295439 GTATACAAATA
1 ATATAAAAATA
95295450 GAAGAAATAT
Statistics
Matches: 32, Mismatches: 7, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
28 4 0.12
29 28 0.88
ACGTcount: A:0.56, C:0.06, G:0.09, T:0.29
Consensus pattern (29 bp):
ATATAAAAATAATAATCAAATAATGCATG
Found at i:95295645 original size:7 final size:7
Alignment explanation
Indices: 95295632--95295665 Score: 59
Period size: 7 Copynumber: 4.9 Consensus size: 7
95295622 TAATTTTAAA
95295632 ATAATAT
1 ATAATAT
*
95295639 TTAATAT
1 ATAATAT
95295646 ATAATAT
1 ATAATAT
95295653 ATAATAT
1 ATAATAT
95295660 ATAATA
1 ATAATA
95295666 ACAAGAATAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
7 25 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (7 bp):
ATAATAT
Found at i:95295649 original size:14 final size:13
Alignment explanation
Indices: 95295605--95295665 Score: 65
Period size: 14 Copynumber: 4.8 Consensus size: 13
95295595 TATAATTAAC
95295605 AATAAT-ATATTT
1 AATAATAATATTT
*
95295617 CATAATAAT-TTT
1 AATAATAATATTT
95295629 AA-AATAATATTT
1 AATAATAATATTT
*
95295641 AATATATAATATAT
1 AATA-ATAATATTT
95295655 AATATATAATA
1 AATA-ATAATA
95295666 ACAAGAATAT
Statistics
Matches: 42, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
11 6 0.14
12 14 0.33
13 3 0.07
14 19 0.45
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (13 bp):
AATAATAATATTT
Found at i:95295867 original size:17 final size:20
Alignment explanation
Indices: 95295845--95295885 Score: 61
Period size: 17 Copynumber: 2.2 Consensus size: 20
95295835 ACAATTTACA
95295845 AATTTAAA-AT-AAT-ATAT
1 AATTTAAACATAAATAATAT
95295862 AATTTAAACATAAATAATAT
1 AATTTAAACATAAATAATAT
95295882 AATT
1 AATT
95295886 GGTAATATGT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 8 0.38
18 2 0.10
19 3 0.14
20 8 0.38
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (20 bp):
AATTTAAACATAAATAATAT
Found at i:95295913 original size:2 final size:2
Alignment explanation
Indices: 95295906--95295930 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
95295896 AACATACATA
95295906 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
95295931 AAATAATAAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:95296004 original size:12 final size:13
Alignment explanation
Indices: 95295958--95296007 Score: 50
Period size: 12 Copynumber: 3.9 Consensus size: 13
95295948 CAAGTAAAAC
95295958 ATAATAAATATTAT
1 ATAATAAATA-TAT
95295972 ATAATAAA-ATAT
1 ATAATAAATATAT
***
95295984 ATGGGAAATA-AT
1 ATAATAAATATAT
95295996 ATAATAAATATA
1 ATAATAAATATA
95296008 GCATGTAATA
Statistics
Matches: 28, Mismatches: 6, Indels: 5
0.72 0.15 0.13
Matches are distributed among these distances:
12 17 0.61
13 3 0.11
14 8 0.29
ACGTcount: A:0.60, C:0.00, G:0.06, T:0.34
Consensus pattern (13 bp):
ATAATAAATATAT
Found at i:95296076 original size:20 final size:21
Alignment explanation
Indices: 95296046--95296099 Score: 69
Period size: 20 Copynumber: 2.7 Consensus size: 21
95296036 AAATAATATG
95296046 TATATATAATATATGTA-AAAA
1 TATA-ATAATATATGTATAAAA
*
95296067 TATAATAATATATATATAAAA
1 TATAATAATATATGTATAAAA
95296088 -ATAATAAT-TATG
1 TATAATAATATATG
95296100 AGAGAATTAA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
19 3 0.10
20 19 0.63
21 8 0.27
ACGTcount: A:0.57, C:0.00, G:0.04, T:0.39
Consensus pattern (21 bp):
TATAATAATATATGTATAAAA
Found at i:95298017 original size:121 final size:120
Alignment explanation
Indices: 95297877--95298469 Score: 872
Period size: 118 Copynumber: 5.0 Consensus size: 120
95297867 TTGAGTCTGT
* **
95297877 TTGAGAACATCTGAGAGTCAAATCTGCTATGTCCTCGATTTCTTTCTTGTAAACACAAGAATGTC
1 TTGAGAACATCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTTCTTGTAAACACAAGAATACC
* *
95297942 AAATCATCTTGGATCTGGCTTCAGTAT-AACATCTGAAGGTTAGATTTGCCATGTG
66 AAATCATCTTGGATCT-GCTTCAGTATAAACATCTGAAGGTTAGATCTGCCATATG
* * **
95297997 TCTGAGAACATCTGAGAGTCAAATCTGTTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATGT
1 T-TGAGAACATCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTTCTTGTAAACACAAGAATAC
* *
95298062 CAAATCATCTTGGATTTGGCTTCAGTATAAACATCTGAAGGTTAGATCTGCCATGTG
65 CAAATCATCTTGGATCT-GCTTCAGTATAAACATCTGAAGGTTAGATCTGCCATATG
* * *
95298119 TCTGAGAACATCTGAGAGTCAAATCTGCTATATCTTCGATTTGTTCCTTGTAAACACAAGAATA-
1 T-TGAGAACATCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTTCTTGTAAACACAAGAATAC
* *
95298183 CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGTTTAGATCTGCTATAT-
65 CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCCATATG
* *
95298238 TTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTTGATTTGTTTCTTGTAAACACAAGAATACC
1 TTGAGAACATCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTTCTTGTAAACACAAGAATACC
* * * * *
95298303 AAATCATCTTGGATCTGTTTCAGTATAATCATCTAAAGTTTAGATCTG-C-TATA
66 AAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCCATATG
* *
95298356 TTGATAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTTCTTGTAAACACAAGAATACC
1 TTGAGAACATCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTTCTTGTAAACACAAGAATACC
* *
95298421 AAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAAGCTAGATCTGC
66 AAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGC
95298470 TATACTGCGG
Statistics
Matches: 438, Mismatches: 30, Indels: 11
0.91 0.06 0.02
Matches are distributed among these distances:
117 3 0.01
118 162 0.37
119 47 0.11
120 36 0.08
121 103 0.24
122 87 0.20
ACGTcount: A:0.30, C:0.18, G:0.17, T:0.34
Consensus pattern (120 bp):
TTGAGAACATCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTTCTTGTAAACACAAGAATACC
AAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCCATATG
Found at i:95303740 original size:119 final size:119
Alignment explanation
Indices: 95303327--95303922 Score: 952
Period size: 118 Copynumber: 5.0 Consensus size: 119
95303317 CTTGAGTCTG
**
95303327 TTTGAGAACATCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTTCTTGTAAACACAAGAATGT
1 TTTGAGAACATCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTTCTTGTAAACACAAGAATAC
*
95303392 CAAATCATCTTGGATCTGGCTTCAGTATAAACATCTGAAGGTTAGATCTGC-ATG
66 CAAATCATCTTGGATCT-GCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATA
95303446 TGTCTGAGAACATCTGAGAGTCAAATCTGCTATATGTCCTCGATTTG-TTCTTGTAAACACAAGA
1 T-T-TGAGAACATCTGAGAGTCAAATCTGC--TATGTCCTCGATTTGTTTCTTGTAAACACAAGA
** *
95303510 ATGTCAAATCATCTTGGAT-TGCTTCAGTATAAACATCTGAAGGTTAGATCTGC-ATG
62 ATACCAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATA
* *
95303566 TGTCTGAGAACATCTGAGAGTCAAATCTGCTATAT-CTCGATTTGTTCCTTGTAAACACAAGAAT
1 T-T-TGAGAACATCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTTCTTGTAAACACAAGAAT
*
95303630 ACCAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGTTTAGATCTGCTATA
64 ACCAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATA
*
95303686 TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTTCTTGTAAACACAAGAATAC
1 TTTGAGAACATCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTTCTTGTAAACACAAGAATAC
*
95303751 CAAATCATCTTGGATCTG-TTCAGTATAAACATCTGAAGTTTAGATCTGCTATA
66 CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATA
* *
95303804 TCTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTTCTTGTAAACACAAGAATAC
1 TTTGAGAACATCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTTCTTGTAAACACAAGAATAC
* *
95303869 CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAAGCTAGATCTGCTATA
66 CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATA
95303923 CTGCGGCCTA
Statistics
Matches: 455, Mismatches: 13, Indels: 18
0.94 0.03 0.04
Matches are distributed among these distances:
117 9 0.02
118 183 0.40
119 115 0.25
120 70 0.15
121 27 0.06
122 36 0.08
123 15 0.03
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.33
Consensus pattern (119 bp):
TTTGAGAACATCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTTCTTGTAAACACAAGAATAC
CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATA
Found at i:95303780 original size:237 final size:238
Alignment explanation
Indices: 95303329--95303922 Score: 957
Period size: 237 Copynumber: 2.5 Consensus size: 238
95303319 TGAGTCTGTT
**
95303329 TGAGAACATCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTTCTTGTAAACACAAGAATGTCA
1 TGAGAACATCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTTCTTGTAAACACAAGAATACCA
*
95303394 AATCATCTTGGATCTGGCTTCAGTATAAACATCTGAAGGTTAGATCTGC-ATGTGTCTGAGAACA
66 AATCATCTTGGATCT-GCTTCAGTATAAACATCTGAA-GTTAGATCTGCTATATGTCTGAGAACA
**
95303458 TCTGAGAGTCAAATCTGCTATATGTCCTCGATTTGTTCTTGTAAACACAAGAATGTCAAATCATC
129 TCTGAGAGTCAAATCTGC-ATATGTCCTCGATTTGTTCTTGTAAACACAAGAATACCAAATCATC
* *
95303523 TTGGATTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCATGTGTC
193 TTGGATTGCTTCAGTATAAACATCTGAAGGTTAGATCTGC-TATATC
* *
95303570 TGAGAACATCTGAGAGTCAAATCTGCTATAT-CTCGATTTGTTCCTTGTAAACACAAGAATACCA
1 TGAGAACATCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTTCTTGTAAACACAAGAATACCA
*
95303634 AATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGTTTAGATCTGCTATAT-T-TGAGAACGT
66 AATCATCTTGGATCTGCTTCAGTATAAACATCTGAAG-TTAGATCTGCTATATGTCTGAGAACAT
95303697 CTGAGAGTCAAATCTGC-TATGTCCTCGATTTGTTTCTTGTAAACACAAGAATACCAAATCATCT
130 CTGAGAGTCAAATCTGCATATGTCCTCGATTTG-TTCTTGTAAACACAAGAATACCAAATCATCT
*
95303761 TGGATCTG-TTCAGTATAAACATCTGAAGTTTAGATCTGCTATATC
194 TGGAT-TGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATATC
*
95303806 TGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTTCTTGTAAACACAAGAATACCA
1 TGAGAACATCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTTCTTGTAAACACAAGAATACCA
*
95303871 AATCATCTTGGATCTGCTTCAGTATAAACATCTGAAAGCTAGATCTGCTATA
66 AATCATCTTGGATCTGCTTCAGTATAAACATCTG-AAGTTAGATCTGCTATA
95303923 CTGCGGCCTA
Statistics
Matches: 332, Mismatches: 15, Indels: 16
0.91 0.04 0.04
Matches are distributed among these distances:
236 48 0.14
237 143 0.43
238 31 0.09
239 32 0.10
240 48 0.14
241 30 0.09
ACGTcount: A:0.31, C:0.19, G:0.18, T:0.33
Consensus pattern (238 bp):
TGAGAACATCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTTCTTGTAAACACAAGAATACCA
AATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGTTAGATCTGCTATATGTCTGAGAACATC
TGAGAGTCAAATCTGCATATGTCCTCGATTTGTTCTTGTAAACACAAGAATACCAAATCATCTTG
GATTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATATC
Found at i:95311892 original size:15 final size:15
Alignment explanation
Indices: 95311854--95311898 Score: 51
Period size: 15 Copynumber: 3.1 Consensus size: 15
95311844 ACTTTGAATA
*
95311854 CAAATG-ATGTGATG
1 CAAATGCATGAGATG
95311868 -AAATGCCATGAGATG
1 CAAATG-CATGAGATG
95311883 CAAATGCATGA-ATG
1 CAAATGCATGAGATG
95311897 CA
1 CA
95311899 TAAAGAATAT
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
13 5 0.19
14 5 0.19
15 12 0.44
16 5 0.19
ACGTcount: A:0.40, C:0.13, G:0.24, T:0.22
Consensus pattern (15 bp):
CAAATGCATGAGATG
Found at i:95315655 original size:7 final size:7
Alignment explanation
Indices: 95315643--95315675 Score: 66
Period size: 7 Copynumber: 4.7 Consensus size: 7
95315633 AAATAGTATT
95315643 TAATATA
1 TAATATA
95315650 TAATATA
1 TAATATA
95315657 TAATATA
1 TAATATA
95315664 TAATATA
1 TAATATA
95315671 TAATA
1 TAATA
95315676 ACAAGAATAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 26 1.00
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (7 bp):
TAATATA
Found at i:95315685 original size:21 final size:21
Alignment explanation
Indices: 95315643--95315685 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
95315633 AAATAGTATT
* *
95315643 TAATATATAATATATAATATA
1 TAATATATAATATACAAAATA
95315664 TAATATATAATA-ACAAGAATA
1 TAATATATAATATACAA-AATA
95315685 T
1 T
95315686 TTACAAAAGA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 3 0.16
21 16 0.84
ACGTcount: A:0.58, C:0.02, G:0.02, T:0.37
Consensus pattern (21 bp):
TAATATATAATATACAAAATA
Found at i:95315799 original size:18 final size:17
Alignment explanation
Indices: 95315760--95315795 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 17
95315750 ATAAATTTAA
95315760 AATGAAATGATATATAT
1 AATGAAATGATATATAT
*
95315777 AATGAAATG-TGTATAT
1 AATGAAATGATATATAT
95315793 AAT
1 AAT
95315796 ATGAGTTAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 9 0.50
17 9 0.50
ACGTcount: A:0.50, C:0.00, G:0.14, T:0.36
Consensus pattern (17 bp):
AATGAAATGATATATAT
Found at i:95315871 original size:20 final size:19
Alignment explanation
Indices: 95315833--95315875 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 19
95315823 ACAATTTACA
95315833 AATTTAAAATAATATATAT
1 AATTTAAAATAATATATAT
95315852 AATTTAAACATAA-ATAATAT
1 AATTTAAA-ATAATAT-ATAT
95315872 AATT
1 AATT
95315876 GGTAATATGT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 10 0.45
20 12 0.55
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (19 bp):
AATTTAAAATAATATATAT
Found at i:95315985 original size:12 final size:13
Alignment explanation
Indices: 95315939--95315988 Score: 50
Period size: 12 Copynumber: 3.9 Consensus size: 13
95315929 CAAATAAAAC
95315939 ATAATAAATATTAT
1 ATAATAAATA-TAT
95315953 ATAATAAA-ATAT
1 ATAATAAATATAT
***
95315965 ATGGGAAATA-AT
1 ATAATAAATATAT
95315977 ATAATAAATATA
1 ATAATAAATATA
95315989 GCATGTAATA
Statistics
Matches: 28, Mismatches: 6, Indels: 5
0.72 0.15 0.13
Matches are distributed among these distances:
12 17 0.61
13 3 0.11
14 8 0.29
ACGTcount: A:0.60, C:0.00, G:0.06, T:0.34
Consensus pattern (13 bp):
ATAATAAATATAT
Found at i:95316066 original size:28 final size:28
Alignment explanation
Indices: 95316008--95316076 Score: 83
Period size: 28 Copynumber: 2.6 Consensus size: 28
95315998 AATGAAAATT
*
95316008 TATATGTAAAAATAATATGTATATATAA
1 TATATGTAAAAATAATATATATATATAA
95316036 TATATGTAAAAAT-ATA-ATA-ATAT-A
1 TATATGTAAAAATAATATATATATATAA
*
95316060 TATATATAAATAATAAT
1 TATATGTAAA-AATAAT
95316077 TATGAGAGAA
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
24 10 0.27
25 7 0.19
26 4 0.11
27 3 0.08
28 13 0.35
ACGTcount: A:0.57, C:0.00, G:0.04, T:0.39
Consensus pattern (28 bp):
TATATGTAAAAATAATATATATATATAA
Found at i:95319387 original size:48 final size:48
Alignment explanation
Indices: 95319331--95319545 Score: 225
Period size: 48 Copynumber: 4.6 Consensus size: 48
95319321 TGTGTGCCAC
*
95319331 TGTAAGACCATGTCTGGGACATGGCATCGGCATTGATATATGTGCTAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCATTGATATATGAGCTAG
* * *
95319379 TGTAAGACCATGTCTGGGACATAGCATCGGCCA--CAT-TACGAGAGCTAG
1 TGTAAGACCATGTCTGGGACATGGCATCGG-CATTGATATA--TGAGCTAG
* * *
95319427 TGTAAGACCATGT-T-GGACATGGCATCGGCATTAAT-TGTGAGCCAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCATTGATATATGAGCTAG
* * * *
95319472 TGTAAGACCATGT-T-GGACATGGCCTCAGCATTGAGACGA-GAGCTAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCATTGATA-TATGAGCTAG
95319518 TGTAAGACCATGTCTGGGACA-GGCATCG
1 TGTAAGACCATGTCTGGGACATGGCATCG
95319546 ACAATCCACC
Statistics
Matches: 140, Mismatches: 18, Indels: 19
0.79 0.10 0.11
Matches are distributed among these distances:
45 39 0.28
46 34 0.24
47 12 0.09
48 53 0.38
49 2 0.01
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (48 bp):
TGTAAGACCATGTCTGGGACATGGCATCGGCATTGATATATGAGCTAG
Found at i:95319518 original size:91 final size:94
Alignment explanation
Indices: 95319331--95319545 Score: 273
Period size: 91 Copynumber: 2.3 Consensus size: 94
95319321 TGTGTGCCAC
* * *
95319331 TGTAAGACCATGTCTGGGACATGGCATCGGCATTGATATATGTGCTAGTGTAAGACCATGTCTGG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCATTAATATATGAGCCAGTGTAAGACCATGTCTGG
*
95319396 GACATAGCATCGGCCACATTACGAGAGCTAG
66 GACATAGCATCAG-C-CATTACGAGAGCTAG
*
95319427 TGTAAGACCATGT-T-GGACATGGCATCGGCATTAAT-TGTGAGCCAGTGTAAGACCATGT-T-G
1 TGTAAGACCATGTCTGGGACATGGCATCGGCATTAATATATGAGCCAGTGTAAGACCATGTCTGG
* *
95319487 GACATGGCCTCAG-CATTGAGACGAGAGCTAG
66 GACATAGCATCAGCCATT---ACGAGAGCTAG
95319518 TGTAAGACCATGTCTGGGACA-GGCATCG
1 TGTAAGACCATGTCTGGGACATGGCATCG
95319546 ACAATCCACC
Statistics
Matches: 107, Mismatches: 7, Indels: 14
0.84 0.05 0.11
Matches are distributed among these distances:
88 4 0.04
91 35 0.33
92 9 0.08
93 25 0.23
94 20 0.19
95 1 0.01
96 13 0.12
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (94 bp):
TGTAAGACCATGTCTGGGACATGGCATCGGCATTAATATATGAGCCAGTGTAAGACCATGTCTGG
GACATAGCATCAGCCATTACGAGAGCTAG
Found at i:95325513 original size:29 final size:29
Alignment explanation
Indices: 95325474--95325581 Score: 90
Period size: 29 Copynumber: 3.5 Consensus size: 29
95325464 AAACGATAAT
*
95325474 ATAAGTGACTAAAATGTAACATTTCAAAC
1 ATAAATGACTAAAATGTAACATTTCAAAC
* ***
95325503 ATAAATGACTAACCACTTCGTAACAAAACGATAAC
1 ATAAATGACTAA--A-AT-GTAACATTTC-A-AAC
* * *
95325538 ATAAGTGACTAAAACGTAACATTTCAATC
1 ATAAATGACTAAAATGTAACATTTCAAAC
95325567 ATAAATGACTAAAAT
1 ATAAATGACTAAAAT
95325582 ATAATTTGAG
Statistics
Matches: 59, Mismatches: 14, Indels: 12
0.69 0.16 0.14
Matches are distributed among these distances:
29 26 0.44
30 1 0.02
31 8 0.14
32 1 0.02
33 8 0.14
34 1 0.02
35 14 0.24
ACGTcount: A:0.49, C:0.17, G:0.09, T:0.25
Consensus pattern (29 bp):
ATAAATGACTAAAATGTAACATTTCAAAC
Found at i:95325529 original size:64 final size:64
Alignment explanation
Indices: 95325450--95325578 Score: 222
Period size: 64 Copynumber: 2.0 Consensus size: 64
95325440 TAGTAAAGTG
* * *
95325450 ACCACTTCTTAACAAAACGATAATATAAGTGACTAAAATGTAACATTTCAAACATAAATGACTA
1 ACCACTTCGTAACAAAACGATAACATAAGTGACTAAAACGTAACATTTCAAACATAAATGACTA
*
95325514 ACCACTTCGTAACAAAACGATAACATAAGTGACTAAAACGTAACATTTCAATCATAAATGACTA
1 ACCACTTCGTAACAAAACGATAACATAAGTGACTAAAACGTAACATTTCAAACATAAATGACTA
95325578 A
1 A
95325579 AATATAATTT
Statistics
Matches: 61, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
64 61 1.00
ACGTcount: A:0.48, C:0.19, G:0.09, T:0.25
Consensus pattern (64 bp):
ACCACTTCGTAACAAAACGATAACATAAGTGACTAAAACGTAACATTTCAAACATAAATGACTA
Found at i:95331373 original size:18 final size:17
Alignment explanation
Indices: 95331352--95331385 Score: 59
Period size: 18 Copynumber: 1.9 Consensus size: 17
95331342 AATATTTATA
95331352 TACATATATATATATTTG
1 TACATATATAT-TATTTG
95331370 TACATATATATTATTT
1 TACATATATATTATTT
95331386 AAATTGAGCT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.38, C:0.06, G:0.03, T:0.53
Consensus pattern (17 bp):
TACATATATATTATTTG
Found at i:95333668 original size:17 final size:17
Alignment explanation
Indices: 95333633--95333679 Score: 53
Period size: 17 Copynumber: 2.8 Consensus size: 17
95333623 GTGATGTTTG
*
95333633 ATAAATTTT-CTTTTAA
1 ATAAATTTTATTTTTAA
*
95333649 AT-AATCTTTATTTTTCA
1 ATAAAT-TTTATTTTTAA
95333666 ATAAATTTTATTTT
1 ATAAATTTTATTTT
95333680 AATTTAAGTC
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
15 3 0.12
16 5 0.19
17 15 0.58
18 3 0.12
ACGTcount: A:0.34, C:0.06, G:0.00, T:0.60
Consensus pattern (17 bp):
ATAAATTTTATTTTTAA
Found at i:95334622 original size:39 final size:39
Alignment explanation
Indices: 95334568--95334645 Score: 138
Period size: 39 Copynumber: 2.0 Consensus size: 39
95334558 AAGATATGTT
**
95334568 GGCTGCGGAATTTTGTTTTACATGCATTGCAAATTCTCC
1 GGCTGCGGAATTTTGTTTTACATGCACCGCAAATTCTCC
95334607 GGCTGCGGAATTTTGTTTTACATGCACCGCAAATTCTCC
1 GGCTGCGGAATTTTGTTTTACATGCACCGCAAATTCTCC
95334646 CTCGTCAAAC
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 37 1.00
ACGTcount: A:0.21, C:0.23, G:0.21, T:0.36
Consensus pattern (39 bp):
GGCTGCGGAATTTTGTTTTACATGCACCGCAAATTCTCC
Found at i:95335966 original size:13 final size:13
Alignment explanation
Indices: 95335948--95335983 Score: 63
Period size: 13 Copynumber: 2.8 Consensus size: 13
95335938 AAAATTCTAG
95335948 TGTCATGCAATCA
1 TGTCATGCAATCA
95335961 TGTCATGCAATCA
1 TGTCATGCAATCA
*
95335974 AGTCATGCAA
1 TGTCATGCAA
95335984 ATCAAAATAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.33, C:0.22, G:0.17, T:0.28
Consensus pattern (13 bp):
TGTCATGCAATCA
Found at i:95338184 original size:17 final size:18
Alignment explanation
Indices: 95338152--95338185 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
95338142 GATATGATAC
*
95338152 TAAAATTATTTAAAAAAT
1 TAAAATTATATAAAAAAT
95338170 TAAAA-TATATAAAAAA
1 TAAAATTATATAAAAAA
95338186 AATCAGGGAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (18 bp):
TAAAATTATATAAAAAAT
Found at i:95338484 original size:23 final size:22
Alignment explanation
Indices: 95338456--95338499 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
95338446 AATTAAATCA
95338456 CTAAGATTACAAAATCATATCTT
1 CTAAGATTAC-AAATCATATCTT
* *
95338479 CTAAGATTGCATATCATATCT
1 CTAAGATTACAAATCATATCT
95338500 AAGATTGCAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 10 0.53
23 9 0.47
ACGTcount: A:0.39, C:0.18, G:0.07, T:0.36
Consensus pattern (22 bp):
CTAAGATTACAAATCATATCTT
Found at i:95338547 original size:14 final size:15
Alignment explanation
Indices: 95338492--95338618 Score: 78
Period size: 18 Copynumber: 7.5 Consensus size: 15
95338482 AGATTGCATA
95338492 TCATATCTAAGATTG
1 TCATATCTAAGATTG
95338507 CAATCATATCTAAGATTG
1 ---TCATATCTAAGATTG
95338525 TATCATATCTAAGATTG
1 --TCATATCTAAGATTG
95338542 CATATCATATCTAAGATTG
1 ----TCATATCTAAGATTG
95338561 CAATCATATCTAAGATTG
1 ---TCATATCTAAGATTG
*
95338579 T-ATCATATAAGATTG
1 TCAT-ATCTAAGATTG
95338594 CATATCATATCTAAGATTG
1 ----TCATATCTAAGATTG
95338613 -CATATC
1 TCATATC
95338619 ATTGAAGATT
Statistics
Matches: 96, Mismatches: 5, Indels: 20
0.79 0.04 0.17
Matches are distributed among these distances:
14 8 0.08
15 11 0.11
17 16 0.17
18 31 0.32
19 28 0.29
20 2 0.02
ACGTcount: A:0.37, C:0.15, G:0.11, T:0.37
Consensus pattern (15 bp):
TCATATCTAAGATTG
Found at i:95338551 original size:54 final size:54
Alignment explanation
Indices: 95338478--95338620 Score: 263
Period size: 54 Copynumber: 2.7 Consensus size: 54
95338468 AATCATATCT
95338478 TCTAAGATTGCATATCATATCTAAGATTGCAATCATATCTAAGATTGTATCATA
1 TCTAAGATTGCATATCATATCTAAGATTGCAATCATATCTAAGATTGTATCATA
95338532 TCTAAGATTGCATATCATATCTAAGATTGCAATCATATCTAAGATTGTATCATA
1 TCTAAGATTGCATATCATATCTAAGATTGCAATCATATCTAAGATTGTATCATA
95338586 --TAAGATTGCATATCATATCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCATATCTAAGATTGCA-ATCAT
95338621 TGAAGATTAT
Statistics
Matches: 88, Mismatches: 0, Indels: 3
0.97 0.00 0.03
Matches are distributed among these distances:
52 29 0.33
53 5 0.06
54 54 0.61
ACGTcount: A:0.37, C:0.15, G:0.11, T:0.37
Consensus pattern (54 bp):
TCTAAGATTGCATATCATATCTAAGATTGCAATCATATCTAAGATTGTATCATA
Found at i:95338600 original size:71 final size:71
Alignment explanation
Indices: 95338471--95338621 Score: 229
Period size: 71 Copynumber: 2.1 Consensus size: 71
95338461 ATTACAAAAT
95338471 CATATC-TTCTAAGATTGCATATCATATCTAAGATTGCAATCATATCTAAGATTGTATCATATCT
1 CATATCATTCTAAGATTGCATATCATATCTAAGATTGCAATCATA-CTAAGATTGTATCATATCT
95338535 AAGATTG
65 AAGATTG
*
95338542 CATATCATATCTAAGATTGCA-ATCATATCTAAGATTG-TATCATA-TAAGATTGCATATCATAT
1 CATATCAT-TCTAAGATTGCATATCATATCTAAGATTGCAATCATACTAAGATTG--TATCATAT
95338604 CTAAGATTG
63 CTAAGATTG
95338613 CATATCATT
1 CATATCATT
95338622 GAAGATTATA
Statistics
Matches: 75, Mismatches: 1, Indels: 9
0.88 0.01 0.11
Matches are distributed among these distances:
69 8 0.11
70 1 0.01
71 37 0.49
72 17 0.23
73 12 0.16
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.38
Consensus pattern (71 bp):
CATATCATTCTAAGATTGCATATCATATCTAAGATTGCAATCATACTAAGATTGTATCATATCTA
AGATTG
Done.