Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr02 99090824
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 99090824
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 317 characters in sequence are not A, C, G, or T
File 306 of 318
Found at i:95566546 original size:42 final size:42
Alignment explanation
Indices: 95566497--95566582 Score: 145
Period size: 42 Copynumber: 2.0 Consensus size: 42
95566487 ATCGAGCTAA
* * *
95566497 TACTCAATTGGTGATGCGTTTTGTTCTTAAATTTAGTTCTTT
1 TACTCAATTGGTAATGCGTTTTATTCTTAAATTTAGCTCTTT
95566539 TACTCAATTGGTAATGCGTTTTATTCTTAAATTTAGCTCTTT
1 TACTCAATTGGTAATGCGTTTTATTCTTAAATTTAGCTCTTT
95566581 TA
1 TA
95566583 TTTAAAGATT
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
42 41 1.00
ACGTcount: A:0.22, C:0.13, G:0.14, T:0.51
Consensus pattern (42 bp):
TACTCAATTGGTAATGCGTTTTATTCTTAAATTTAGCTCTTT
Found at i:95569122 original size:40 final size:40
Alignment explanation
Indices: 95569043--95569153 Score: 215
Period size: 40 Copynumber: 2.8 Consensus size: 40
95569033 TTGAAGGAAT
95569043 ATATCCGGGTTAAATCCCGCAGGC-TTGTGCTGGTAATAG
1 ATATCCGGGTTAAATCCCGCAGGCTTTGTGCTGGTAATAG
95569082 ATATCCGGGTTAAATCCCGCAGGCTTTGTGCTGGTAATAG
1 ATATCCGGGTTAAATCCCGCAGGCTTTGTGCTGGTAATAG
95569122 ATATCCGGGTTAAATCCCGCAGGCTTTGTGCT
1 ATATCCGGGTTAAATCCCGCAGGCTTTGTGCT
95569154 AGAACTTGGA
Statistics
Matches: 71, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
39 24 0.34
40 47 0.66
ACGTcount: A:0.22, C:0.22, G:0.27, T:0.30
Consensus pattern (40 bp):
ATATCCGGGTTAAATCCCGCAGGCTTTGTGCTGGTAATAG
Found at i:95571104 original size:13 final size:13
Alignment explanation
Indices: 95571088--95571121 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
95571078 TTATTTTGTT
95571088 TTATTTAGTTTTA
1 TTATTTAGTTTTA
*
95571101 TTATTTATTTTTA
1 TTATTTAGTTTTA
95571114 TTAATTTA
1 TT-ATTTA
95571122 AGATTAAGCT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 14 0.74
14 5 0.26
ACGTcount: A:0.26, C:0.00, G:0.03, T:0.71
Consensus pattern (13 bp):
TTATTTAGTTTTA
Found at i:95574716 original size:25 final size:27
Alignment explanation
Indices: 95574688--95574752 Score: 77
Period size: 24 Copynumber: 2.6 Consensus size: 27
95574678 TAAAATAAAA
95574688 TAATATATTTATAT-TATTTTTAAT-T
1 TAATATATTTATATATATTTTTAATAT
*
95574713 TAATA-ATTTA-ATATATTTTTTATAT
1 TAATATATTTATATATATTTTTAATAT
*
95574738 TAAAAT-TTTATATAT
1 TAATATATTTATATAT
95574753 GGTCATCTTA
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
23 2 0.06
24 14 0.41
25 14 0.41
26 4 0.12
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (27 bp):
TAATATATTTATATATATTTTTAATAT
Found at i:95577543 original size:11 final size:11
Alignment explanation
Indices: 95577527--95577556 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
95577517 ACAGTGTTGA
95577527 AAGGAATACTT
1 AAGGAATACTT
95577538 AAGGAATACTT
1 AAGGAATACTT
*
95577549 AACGAATA
1 AAGGAATA
95577557 AGAACGGTGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.50, C:0.10, G:0.17, T:0.23
Consensus pattern (11 bp):
AAGGAATACTT
Found at i:95577911 original size:17 final size:18
Alignment explanation
Indices: 95577870--95577911 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
95577860 AATGCCATGT
95577870 TTTTTGTTACCAAAATCC
1 TTTTTGTTACCAAAATCC
* *
95577888 ATTTTGTTACCGAAAT-C
1 TTTTTGTTACCAAAATCC
95577905 TTTTTGT
1 TTTTTGT
95577912 GGAGAGGTTG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
17 7 0.33
18 14 0.67
ACGTcount: A:0.24, C:0.17, G:0.10, T:0.50
Consensus pattern (18 bp):
TTTTTGTTACCAAAATCC
Found at i:95579650 original size:3 final size:3
Alignment explanation
Indices: 95579611--95579636 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
95579601 TTATTGTAGA
95579611 TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TA
95579637 CATACTTTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:95589639 original size:68 final size:70
Alignment explanation
Indices: 95589474--95589647 Score: 217
Period size: 71 Copynumber: 2.5 Consensus size: 70
95589464 TTTTCAAGGG
* * * * *
95589474 AAATCAACTCATATTGCGAGAGATGAGTTGAGCTTCAAGACACGTTGAGGTATTTTTAATTTTTT
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTTAATTTATG
95589539 TTTTCA
66 TTTT-A
* * * *
95589545 AAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTC-GGGCACGCTGAGGTATTTTTAGTTTATG
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTTAATTTATG
95589609 TTTT-
66 TTTTA
** *
95589613 AAATTGACTCATATTGCGAGAGGTGAGTTAAGCCT
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
95589648 TTCAATTTTT
Statistics
Matches: 90, Mismatches: 13, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
68 31 0.34
70 26 0.29
71 33 0.37
ACGTcount: A:0.28, C:0.14, G:0.22, T:0.36
Consensus pattern (70 bp):
AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTTAATTTATG
TTTTA
Found at i:95589744 original size:71 final size:72
Alignment explanation
Indices: 95589647--95589805 Score: 214
Period size: 72 Copynumber: 2.2 Consensus size: 72
95589637 GAGTTAAGCC
* *
95589647 TTTCAATTTTTGTTTTTCAAAATCAACTCAT-TTGCTAGAGGTGAATTGAGCCTCGGGGCACACT
1 TTTCAATTTTTGTTTTTCAAAATCAACTCATATTGCGAGAGGTGAATTGAGCCTCAGGGCACACT
95589711 GAGGTAT
66 GAGGTAT
** * * *
95589718 TTTCAATTTTTGTGTTTT-AATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGC
1 TTTCAATTTTTGT-TTTTCAAAATCAACTCATATTGCGAGAGGTGAATTGAGCCTCAGGGCACAC
95589782 TGAGGTAT
65 TGAGGTAT
* *
95589790 TTTAAATTTCTGTTTT
1 TTTCAATTTTTGTTTT
95589806 CAACTTACGT
Statistics
Matches: 77, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
71 27 0.35
72 50 0.65
ACGTcount: A:0.23, C:0.15, G:0.21, T:0.41
Consensus pattern (72 bp):
TTTCAATTTTTGTTTTTCAAAATCAACTCATATTGCGAGAGGTGAATTGAGCCTCAGGGCACACT
GAGGTAT
Found at i:95589908 original size:140 final size:140
Alignment explanation
Indices: 95589744--95590650 Score: 1645
Period size: 140 Copynumber: 6.5 Consensus size: 140
95589734 TTAATTTCAA
*
95589744 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTAAATTTCTGTTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
* *
95589809 CTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
66 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAAGTGGGTTGAACCTTTTAATTTCTACTTTT
*
95589874 TCAAAATTAG
131 TCAAAATCAG
95589884 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
*
95589949 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTAC-TTT
66 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAAGTGGGTTGAACCTTTTAATTTCTACTTTT
95590013 TCAAAATCAG
131 TCAAAATCAG
*
95590023 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTAAGGTATTTTCAATTTCTGTTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
95590088 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAAGTGGGTTGAACCTTTTAATTTCTACTTTT
66 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAAGTGGGTTGAACCTTTTAATTTCTACTTTT
95590153 TCAAAATCAG
131 TCAAAATCAG
*
95590163 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTAAGGTATTTTCAATTTCTGTTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
*
95590228 TTTACGTTGTTCAAGAATCAACTCATATTGCGAAAAGTGGGTTGAACCTTTTAATTTCTACTTTT
66 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAAGTGGGTTGAACCTTTTAATTTCTACTTTT
95590293 TCAAAATCAG
131 TCAAAATCAG
* * *
95590303 CTCATATTACGAGAGGTGAGTTGAGCCTCAGGTCACGCTAAGGTATTTTCAATTTCTGTTTTTAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
95590368 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAAGTGGGTTGAACCTTTTAATTTCTACTTTT
66 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAAGTGGGTTGAACCTTTTAATTTCTACTTTT
95590433 TCAAAATCAG
131 TCAAAATCAG
95590443 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
* * *
95590508 TTTATGTTGTTCAAGAATCAACTCATATTACGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
66 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAAGTGGGTTGAACCTTTTAATTTCTACTTTT
95590573 TCAAAATCAG
131 TCAAAATCAG
*
95590583 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGTTCACATGCTGAGGTATTTTCAATTTCTGTCTTT
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCAC--GCTGAGGTATTTTCAATTTCTGT-TTT
95590648 CAA
63 CAA
95590651 AAAAAAAATT
Statistics
Matches: 747, Mismatches: 16, Indels: 5
0.97 0.02 0.01
Matches are distributed among these distances:
139 136 0.18
140 582 0.78
142 23 0.03
143 6 0.01
ACGTcount: A:0.26, C:0.17, G:0.20, T:0.37
Consensus pattern (140 bp):
CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAAGTGGGTTGAACCTTTTAATTTCTACTTTT
TCAAAATCAG
Found at i:95590506 original size:13 final size:13
Alignment explanation
Indices: 95590488--95590521 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
95590478 CGCTGAGGTA
*
95590488 TTTTCAATTTCTG
1 TTTTCAATTTATG
95590501 TTTTCAATTTATG
1 TTTTCAATTTATG
95590514 TTGTTCAA
1 TT-TTCAA
95590522 GAATCAACTC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 14 0.74
14 5 0.26
ACGTcount: A:0.21, C:0.12, G:0.09, T:0.59
Consensus pattern (13 bp):
TTTTCAATTTATG
Found at i:95590768 original size:72 final size:72
Alignment explanation
Indices: 95590570--95590795 Score: 294
Period size: 72 Copynumber: 3.0 Consensus size: 72
95590560 AATTTCTACT
* ** * * *
95590570 TTTTCAAAA-TCAGCTCATATTGCGAGAGGTGAGTTGAGCCTC-AGTTCACATGCTGAGGTATTT
1 TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAG---ACACGTTGAGGTAATT
95590633 TCAATTTCTG
63 TCAATTTCTG
95590643 TCTTTCAAAAAAAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT
1 T-TTTC------AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT
95590708 AATTTCAATTTCTG
59 AATTTCAATTTCTG
95590722 TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCA
1 TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCA
95590787 ATTTCTG
66 ATTTCTG
95590794 TT
1 TT
95590796 CAAAATGAGT
Statistics
Matches: 138, Mismatches: 6, Indels: 19
0.85 0.04 0.12
Matches are distributed among these distances:
72 69 0.50
73 1 0.01
74 4 0.03
78 4 0.03
79 24 0.17
80 4 0.03
81 30 0.22
82 2 0.01
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.34
Consensus pattern (72 bp):
TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCA
ATTTCTG
Found at i:95590806 original size:49 final size:49
Alignment explanation
Indices: 95590749--95590844 Score: 192
Period size: 49 Copynumber: 2.0 Consensus size: 49
95590739 ATATTGCGAG
95590749 AAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTCA
1 AAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTCA
95590798 AAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTT
1 AAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTT
95590845 TTCAAAATTC
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
49 47 1.00
ACGTcount: A:0.30, C:0.16, G:0.21, T:0.33
Consensus pattern (49 bp):
AAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTCA
Found at i:95590891 original size:121 final size:121
Alignment explanation
Indices: 95590677--95590916 Score: 435
Period size: 121 Copynumber: 2.0 Consensus size: 121
95590667 ATATTGCGAG
95590677 AAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATA
1 AAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATA
* *
95590742 TTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTCA
66 TTACGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTCA
95590798 AAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATA
1 AAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATA
* * *
95590863 TTACGAGAAATTAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTCTGTT
66 TTACGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTT
95590917 TTTCAAAAAA
Statistics
Matches: 114, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
121 114 1.00
ACGTcount: A:0.31, C:0.16, G:0.18, T:0.34
Consensus pattern (121 bp):
AAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATA
TTACGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTCA
Found at i:95591050 original size:74 final size:75
Alignment explanation
Indices: 95590798--95591151 Score: 412
Period size: 74 Copynumber: 4.7 Consensus size: 75
95590788 TTTCTGTTCA
* * *
95590798 AAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTG-TTTTC--AAAATTCAACTC
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTC
*
95590860 ATATTACGAG
66 ATATTGCGAG
* *
95590870 AAATTAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAAAAAATCA
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTGTTTTTC----AAAAAAATCA
*
95590935 ACTCATATTGTGAG
62 ACTCATATTGCGAG
* *
95590949 AAATGAGTTGAGCCTCAAGACATGCTGAGATATTTTCAATTTCTGTTTTTCAAAAAAATCAAC-C
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTC
*
95591013 ATATTGCAAG
66 ATATTGCGAG
** * * *
95591023 AGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTGTT-AAAAAAATCAACTC
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTC
*
95591087 ATATTGTGAG
66 ATATTGCGAG
**** * * *
95591097 AGGCAAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTTCCGTTTTTCAA
1 AAATGAGTTGAGCCTCAAG--ACACGCTGAGGTATTTTCAATTTCTGTTTTTCAA
95591152 TTTCTGCCTT
Statistics
Matches: 245, Mismatches: 26, Indels: 17
0.85 0.09 0.06
Matches are distributed among these distances:
72 41 0.17
73 17 0.07
74 78 0.32
75 12 0.05
76 27 0.11
77 2 0.01
79 68 0.28
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.32
Consensus pattern (75 bp):
AAATGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTC
ATATTGCGAG
Found at i:95591078 original size:153 final size:149
Alignment explanation
Indices: 95590798--95591151 Score: 428
Period size: 153 Copynumber: 2.4 Consensus size: 149
95590788 TTTCTGTTCA
* * *
95590798 AAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTG-TTTTC--AAAATTCAACTC
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTC
* * * * *
95590860 ATATTACGAGAAATTAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTCTGTTTTTCAAAA
66 ATATTACAAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTGTT-----
95590925 AAAAAAATCAACTCATATTGTGAG
126 AAAAAAATCAACTCATATTGTGAG
* *
95590949 AAATGAGTTGAGCCTCAAGACATGCTGAGATATTTTCAATTTCTGTTTTTCAAAAAAATCAAC-C
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTC
* ** *
95591013 ATATTGCAAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTGTTAAAAA
66 ATATTACAAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTGTTAAAAA
95591078 AATCAACTCATATTGTGAG
131 AATCAACTCATATTGTGAG
**** * * *
95591097 AGGCAAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTTCCGTTTTTCAA
1 AAATGAGTTGAGCCTCAAG--ACACGCTGAGGTATTTTCAATTTCTGTTTTTCAA
95591152 TTTCTGCCTT
Statistics
Matches: 175, Mismatches: 23, Indels: 11
0.84 0.11 0.05
Matches are distributed among these distances:
148 38 0.22
150 30 0.17
151 41 0.23
152 5 0.03
153 52 0.30
154 9 0.05
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.32
Consensus pattern (149 bp):
AAATGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTC
ATATTACAAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTGTTAAAAA
AATCAACTCATATTGTGAG
Found at i:95591228 original size:95 final size:95
Alignment explanation
Indices: 95591073--95591246 Score: 251
Period size: 95 Copynumber: 1.8 Consensus size: 95
95591063 TTCTGTTGTT
* *
95591073 AAAAAAATCAACTCATATTGTGAGAGGCAAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAA
1 AAAAAAATCAACTCATATTGCGAGAGGCAAGTTGAGCCTCAGGTCACACGCCGAGCTATTTTCAA
*
95591138 TTTCCGTTTTTCAATTTCTGCCTTTCAAAA
66 TTTCCGTCTTTCAATTTCTGCCTTTCAAAA
** * * *
95591168 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-TGGCTCACGCGCTGAGCTATTTTCA
1 AAAAAAATCAACTCATATTGCGAGAGGCAAGTTGAGCCTCAGG-TCACACGCCGAGCTATTTTCA
*
95591232 ATTTCTGTCTTTCAA
65 ATTTCCGTCTTTCAA
95591247 AAAAGTCAAC
Statistics
Matches: 69, Mismatches: 9, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
94 2 0.03
95 67 0.97
ACGTcount: A:0.29, C:0.21, G:0.18, T:0.32
Consensus pattern (95 bp):
AAAAAAATCAACTCATATTGCGAGAGGCAAGTTGAGCCTCAGGTCACACGCCGAGCTATTTTCAA
TTTCCGTCTTTCAATTTCTGCCTTTCAAAA
Found at i:95591276 original size:77 final size:77
Alignment explanation
Indices: 95591168--95591734 Score: 346
Period size: 79 Copynumber: 7.0 Consensus size: 77
95591158 CCTTTCAAAA
*
95591168 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTATTTTCAA
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACACGCTGAGCTATTTTCAA
*
95591233 TTTCTGTCTTTC
66 TTTCTGTTTTTC
* * * * *
95591245 AAAAAAGTCAACTCATATTGCGAGAGGTGAGTTGAG-CTTCAGATCACACACTGAGGTATTTTTT
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTT-GGCTCACACGCTGAGCTA--TTTT
* *
95591309 CAATTTATATTTTTC
63 CAATTTCTGTTTTTC
* * * * * *
95591324 AAAAAAATCAACTCACATTGCGAGATGTGAGTTGAGCCTCGGGTCACATG-TCGAGGTATTTT-A
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACACGCT-GAGCTATTTTCA
**
95591387 AAATCTGTTTTTC
65 ATTTCTGTTTTTC
* * ***
95591400 AGATTCTGTTTTCAAAAATCAACTCATATTACGAGAAGTGAGTTGAGCCTTGGCTCATGTGCTGA
1 A-A----------AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACACGCTGA
95591465 GCTATTTTCAATTT-T-TTTTTC
55 GCTATTTTCAATTTCTGTTTTTC
* ** * * *
95591486 AAAAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCTTTTTAATTTCTGCGAGA-GTTGAGTT
1 AAAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGC---CT--TGGCT-C-ACACGCTGAGCT
*
95591550 GAGTCTTTTAATTTCTGTTTTTC
58 -A-T-TTTCAATTTCTGTTTTTC
* * * ** *
95591573 --AAAAATCAACTTATATTGCGAGAGGTGAGTTGAACCTTCAG-TCACA-TATCGAGGTATTTTC
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTT-GGCTCACACGCT-GAGCTATTTTC
*
95591634 AAAATCTGCTTTTCAAGTTAAGTTTC
64 --AA------TTTC-TGTT---TTTC
* **
95591660 -AAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTTGGCTCACGTGCTGAGCTATTTTCAA
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACACGCTGAGCTATTTTCAA
95591724 TTTCTGTTTTT
66 TTTCTGTTTTT
95591735 AATGTCTGTT
Statistics
Matches: 381, Mismatches: 61, Indels: 97
0.71 0.11 0.18
Matches are distributed among these distances:
75 8 0.02
76 46 0.12
77 59 0.15
78 6 0.02
79 67 0.18
80 6 0.02
81 4 0.01
82 7 0.02
83 6 0.02
84 32 0.08
85 14 0.04
86 10 0.03
87 62 0.16
88 53 0.14
89 1 0.00
ACGTcount: A:0.28, C:0.16, G:0.19, T:0.36
Consensus pattern (77 bp):
AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACACGCTGAGCTATTTTCAA
TTTCTGTTTTTC
Found at i:95591303 original size:172 final size:168
Alignment explanation
Indices: 95591000--95591306 Score: 429
Period size: 172 Copynumber: 1.8 Consensus size: 168
95590990 TCTGTTTTTC
*
95591000 AAAAAAATCAACCATATTGCAAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTT
1 AAAAAAATCAACCATATTGCAAGAGGTGAGTTGAGCCTCAGGACACGCTGAGCTAATTTCAATTT
* * *
95591065 CTGTTGTTAAAAAAATCAACTCATATTGTGAGAGGCAAGTTGAGCCTCAGGTCACACGCCGAGGT
66 CTGTTGTTAAAAAAATCAACTCATATTGCGAGAGGCAAGTTGAGCCTCAGATCACACACCGAGGT
95591130 ATTTTCAATTTCCGTTTTTCAATTTCTGCCTTTCAAAA
131 ATTTTCAATTTCCGTTTTTCAATTTCTGCCTTTCAAAA
* * * *
95591168 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-TGGCTCACGCGCTGAGCTATTTTCA
1 AAAAAAATCAAC-CATATTGCAAGAGGTGAGTTGAGCCTCAGG---ACACGCTGAGCTAATTTCA
* ** *
95591232 ATTTCTGTCT-TTCAAAAAAGTCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCACACAC
62 ATTTCTGT-TGTT-AAAAAAATCAACTCATATTGCGAGAGGCAAGTTGAGCCTCAGATCACACAC
*
95591296 TGAGGTATTTT
125 CGAGGTATTTT
95591307 TTCAATTTAT
Statistics
Matches: 120, Mismatches: 13, Indels: 8
0.85 0.09 0.06
Matches are distributed among these distances:
168 14 0.12
169 25 0.21
171 26 0.22
172 55 0.46
ACGTcount: A:0.31, C:0.19, G:0.20, T:0.30
Consensus pattern (168 bp):
AAAAAAATCAACCATATTGCAAGAGGTGAGTTGAGCCTCAGGACACGCTGAGCTAATTTCAATTT
CTGTTGTTAAAAAAATCAACTCATATTGCGAGAGGCAAGTTGAGCCTCAGATCACACACCGAGGT
ATTTTCAATTTCCGTTTTTCAATTTCTGCCTTTCAAAA
Found at i:95591541 original size:30 final size:30
Alignment explanation
Indices: 95591505--95591566 Score: 99
Period size: 30 Copynumber: 2.1 Consensus size: 30
95591495 CAACTCATAT
95591505 TGCGAGAGGTGAGTTGAG-CTTTTTAATTTC
1 TGCGAGAGGTGAGTTGAGTC-TTTTAATTTC
*
95591535 TGCGAGAGTTGAGTTGAGTCTTTTAATTTC
1 TGCGAGAGGTGAGTTGAGTCTTTTAATTTC
95591565 TG
1 TG
95591567 TTTTTCAAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
30 29 0.97
31 1 0.03
ACGTcount: A:0.19, C:0.10, G:0.29, T:0.42
Consensus pattern (30 bp):
TGCGAGAGGTGAGTTGAGTCTTTTAATTTC
Found at i:95591718 original size:248 final size:243
Alignment explanation
Indices: 95590926--95591730 Score: 748
Period size: 248 Copynumber: 3.3 Consensus size: 243
95590916 TTTTCAAAAA
* ** ** * *
95590926 AAAAAATCAACTCATATTGTGAGAAATGAGTTGAGCC-T--CAAGACATGCTGAGATATTTTCAA
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGC-TCACGTGCTGAGCTATTTTCAA
* * * * * *
95590988 TTTCTGTTTTTCAAAAAAATCAAC-CATATTGCAAGAGGTGAGTTGAGCCTCAG--GACACGCTG
65 TTTCTGTCTTTCAAAAAAGTCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCACACACTG
* * * * * * * ** *
95591050 AGGTA--ATTTCAATTTCTGTTGTTAAAAAAATCAACTCATATTGTGAGAGGCAAGTTGAGCCTC
130 AGGTATCTTTTCAATTTATATTTTTCAAAAAATCAACTCACATTGCGAGAGGTGAGTTGAACCTC
*** ** * * ** *
95591113 -AGGTCACACGCCGAGGTATTTTCAATTTCCGTTTTTCA-ATTTCTGCCTTTC
195 GA-GTCACATATCGAGGTATTTT-AAAATCTGCTTTTCAGA-TTAAG-TTTTC
*
95591164 AAAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTATTT
1 -----AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGTGCTGAGCTATTT
95591229 TCAATTTCTGTCTTTCAAAAAAGTCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCACAC
61 TCAATTTCTGTCTTTCAAAAAAGTCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCACAC
* *
95591294 ACTGAGGTATTTTTTCAATTTATATTTTTCAAAAAAATCAACTCACATTGCGAGATGTGAGTTGA
126 ACTGAGGTATCTTTTCAATTTATATTTTTC-AAAAAATCAACTCACATTGCGAGAGGTGAGTTGA
* * * * **
95591359 GCCTCGGGTCACATGTCGAGGTATTTTAAAATCTGTTTTTCAGATTCTGTTTTC
190 ACCTCGAGTCACATATCGAGGTATTTTAAAATCTGCTTTTCAGATTAAGTTTTC
* * *
95591413 -AAAAATCAACTCATATTACGAGAAGTGAGTTGAGCCTTGGCTCATGTGCTGAGCTATTTTCAAT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGTGCTGAGCTATTTTCAAT
* * * *
95591477 TT-T-TTTTTCAAAAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCTTTTTA-ATTTCTGCG
66 TTCTGTCTTTC-AAAAAAGTCAACTCATATTGCGAGAGGTGAGTTGAGC--TTCAGA--TC-AC-
* * * * * * *
95591539 AGAGTTGAGTTGAGTCTTTT-AATTTCTGTTTTTC-AAAAATCAACTTATATTGCGAGAGGTGAG
124 ACA-CTGAGGT-A-TCTTTTCAATTTATATTTTTCAAAAAATCAACTCACATTGCGAGAGGTGAG
95591602 TTGAACCTTC-AGTCACATATCGAGGTATTTTCAAAATCTGCTTTTCA-AGTTAAG-TTTC
186 TTGAACC-TCGAGTCACATATCGAGGTATTTT-AAAATCTGCTTTTCAGA-TTAAGTTTTC
*
95591660 AAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTTGGCTCACGTGCTGAGCTATTTTCAAT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGTGCTGAGCTATTTTCAAT
95591725 TTCTGT
66 TTCTGT
95591731 TTTTAATGTC
Statistics
Matches: 477, Mismatches: 58, Indels: 47
0.82 0.10 0.08
Matches are distributed among these distances:
241 5 0.01
242 37 0.08
243 97 0.20
244 4 0.01
245 41 0.09
246 29 0.06
247 58 0.12
248 98 0.21
249 18 0.04
250 37 0.08
251 53 0.11
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.35
Consensus pattern (243 bp):
AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGTGCTGAGCTATTTTCAAT
TTCTGTCTTTCAAAAAAGTCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCACACACTGA
GGTATCTTTTCAATTTATATTTTTCAAAAAATCAACTCACATTGCGAGAGGTGAGTTGAACCTCG
AGTCACATATCGAGGTATTTTAAAATCTGCTTTTCAGATTAAGTTTTC
Found at i:95595573 original size:578 final size:578
Alignment explanation
Indices: 95594464--95595623 Score: 2205
Period size: 578 Copynumber: 2.0 Consensus size: 578
95594454 GATTTCAAAA
95594464 TCAGAGACCCACAAGGGGTCCTTTTAGCTTTCGTCGCCGAAGCCATCACTTGTCACCCAGCAGTG
1 TCAGAGACCCACAAGGGGTCCTTTTAGCTTTCGTCGCCGAAGCCATCACTTGTCACCCAGCAGTG
*
95594529 CAAACGAGGTTAGAAGAAGGATGGCCGGAGGTAATAGTTGAGGGGATGCATTATCCATTATAAAG
66 CAAACGAGGTTAGAAGAAGGATGGCCGGAGGTAATAGTTGAGAGGATGCATTATCCATTATAAAG
*
95594594 AAGAGTAAATCACAATATCCGAATAAATCAGAAATAGGAACTTATATTAGAATATTATTTCAGGC
131 AAGAGTAAATCACAATATCCAAATAAATCAGAAATAGGAACTTATATTAGAATATTATTTCAGGC
95594659 AATCACTTTCAAGCATGTTCCAAGATTGGCTAATGGTTTAGCCCATGTTTTTTGAAACAGAAACT
196 AATCACTTTCAAGCATGTTCCAAGATTGGCTAATGGTTTAGCCCATGTTTTTTGAAACAGAAACT
*
95594724 TTGAAAGAGGGTGAGGAGTTTTACTTGGTGGAGAGTGTTCCTTCATTTGCAGTGCACCGTTTTGC
261 TTGAAAGAGGGTGAGGAGTTTTACTTGGTGGAGAGTGTTCCTTCATTTGCAGTGCACCGTTTTAC
*
95594789 TGCAGAGAAGGTGGGGGAAGTAGACTAAAGAATGGGGAAATATTTAGCAGGTTTTGGGAGGAAGC
326 TGCAGAGAAGGTGGGGGAAGTACACTAAAGAATGGGGAAATATTTAGCAGGTTTTGGGAGGAAGC
95594854 TGTACTTTGTTTGTTTTGGGGAAGATAAAGGATTTCTCTGATGAATGGAACCATCTGGAATGAGA
391 TGTACTTTGTTTGTTTTGGGGAAGATAAAGGATTTCTCTGATGAATGGAACCATCTGGAATGAGA
95594919 TATGATTAATTGTTGTTGGGACGGGTTTGTAGAATGTTTTTGATTGGGCAACAGAACGGTGGTGC
456 TATGATTAATTGTTGTTGGGACGGGTTTGTAGAATGTTTTTGATTGGGCAACAGAACGGTGGTGC
95594984 ACATCTTTTTTTGTAC-TTTATTTATTTATTTATTTATTGTTGATTTTTCTGAGTAGG
521 ACATCTTTTTTTGTACTTTTATTTATTTATTTATTTATTGTTGATTTTTCTGAGTAGG
95595041 TCAGAGACCCACAAGGGGGTCCTTTTAGCTTTCGTCGCCGAAGCCATCACTTGTCACCCAGCAGT
1 TCAGAGACCCACAA-GGGGTCCTTTTAGCTTTCGTCGCCGAAGCCATCACTTGTCACCCAGCAGT
*
95595106 GCAAACGGGGTTAGAAGAAGGATGGCCGGAGGTAATAGTTGAGAGGATGCATTATCCATTATAAA
65 GCAAACGAGGTTAGAAGAAGGATGGCCGGAGGTAATAGTTGAGAGGATGCATTATCCATTATAAA
95595171 GAAGAGTAAATCACAATATCCAAATAAATCAGAAATAGGAACTTATATTAGAATATTATTTCAGG
130 GAAGAGTAAATCACAATATCCAAATAAATCAGAAATAGGAACTTATATTAGAATATTATTTCAGG
*
95595236 CAATCACTTTCAAGCATGTTCCAAGATTGGCTAATGGTTTTGCCCATGTTTTTTGAAACAGAAAC
195 CAATCACTTTCAAGCATGTTCCAAGATTGGCTAATGGTTTAGCCCATGTTTTTTGAAACAGAAAC
*
95595301 TTTGAAAGAGGGTGAGGAGTTTTACTTGGTGGAGAGTGTTCCTTCATTTGCGGTGCACCGTTTTA
260 TTTGAAAGAGGGTGAGGAGTTTTACTTGGTGGAGAGTGTTCCTTCATTTGCAGTGCACCGTTTTA
*
95595366 CTGCAGAGAGGGTGGGGGAAGTACACTAAAGAATGGGGAAATATTTAGCAGGTTTTGGGAGGAAG
325 CTGCAGAGAAGGTGGGGGAAGTACACTAAAGAATGGGGAAATATTTAGCAGGTTTTGGGAGGAAG
95595431 CTGTACTTTGTTTGTTTTGGGGAAGATAAAGGATTTCTCTGATGAATGGAACCATCTGGAATGAG
390 CTGTACTTTGTTTGTTTTGGGGAAGATAAAGGATTTCTCTGATGAATGGAACCATCTGGAATGAG
95595496 ATATGATTAATTGTTGTTGGGACGGGTTTGTAGAATGTTTTTGATTGGGCAACAGAACGGTGGTG
455 ATATGATTAATTGTTGTTGGGACGGGTTTGTAGAATGTTTTTGATTGGGCAACAGAACGGTGGTG
95595561 CACATCTTTTTTTGTACTTTATTTATTTATTTATTTATTTATTGTTGATTTTTCTGAGTAGG
520 CACATCTTTTTTTGTAC--T-TTTATTTATTTATTTATTTATTGTTGATTTTTCTGAGTAGG
95595623 T
1 T
95595624 TTGGGCTTAA
Statistics
Matches: 570, Mismatches: 8, Indels: 5
0.98 0.01 0.01
Matches are distributed among these distances:
577 14 0.02
578 514 0.90
582 42 0.07
ACGTcount: A:0.28, C:0.13, G:0.26, T:0.33
Consensus pattern (578 bp):
TCAGAGACCCACAAGGGGTCCTTTTAGCTTTCGTCGCCGAAGCCATCACTTGTCACCCAGCAGTG
CAAACGAGGTTAGAAGAAGGATGGCCGGAGGTAATAGTTGAGAGGATGCATTATCCATTATAAAG
AAGAGTAAATCACAATATCCAAATAAATCAGAAATAGGAACTTATATTAGAATATTATTTCAGGC
AATCACTTTCAAGCATGTTCCAAGATTGGCTAATGGTTTAGCCCATGTTTTTTGAAACAGAAACT
TTGAAAGAGGGTGAGGAGTTTTACTTGGTGGAGAGTGTTCCTTCATTTGCAGTGCACCGTTTTAC
TGCAGAGAAGGTGGGGGAAGTACACTAAAGAATGGGGAAATATTTAGCAGGTTTTGGGAGGAAGC
TGTACTTTGTTTGTTTTGGGGAAGATAAAGGATTTCTCTGATGAATGGAACCATCTGGAATGAGA
TATGATTAATTGTTGTTGGGACGGGTTTGTAGAATGTTTTTGATTGGGCAACAGAACGGTGGTGC
ACATCTTTTTTTGTACTTTTATTTATTTATTTATTTATTGTTGATTTTTCTGAGTAGG
Found at i:95595587 original size:4 final size:4
Alignment explanation
Indices: 95595578--95595603 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
95595568 TTTTTTGTAC
95595578 TTTA TTTA TTTA TTTA TTTA TTTA TT
1 TTTA TTTA TTTA TTTA TTTA TTTA TT
95595604 GTTGATTTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (4 bp):
TTTA
Found at i:95599790 original size:17 final size:17
Alignment explanation
Indices: 95599768--95599803 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
95599758 AAAAAAATCG
95599768 TTTAATACATAAATTTA
1 TTTAATACATAAATTTA
*
95599785 TTTAATAGATAAATTTA
1 TTTAATACATAAATTTA
95599802 TT
1 TT
95599804 AAAGAGTTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.44, C:0.03, G:0.03, T:0.50
Consensus pattern (17 bp):
TTTAATACATAAATTTA
Found at i:95604891 original size:18 final size:18
Alignment explanation
Indices: 95604865--95604900 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
95604855 AAGTGAAATT
95604865 TTAAAATATAATTTTATA
1 TTAAAATATAATTTTATA
*
95604883 TTAACATATAATTTTATA
1 TTAAAATATAATTTTATA
95604901 AAATTTTAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (18 bp):
TTAAAATATAATTTTATA
Found at i:95611620 original size:9 final size:9
Alignment explanation
Indices: 95611606--95611646 Score: 73
Period size: 9 Copynumber: 4.6 Consensus size: 9
95611596 TTATAAAAAA
95611606 TAATTCGGT
1 TAATTCGGT
*
95611615 TAATTCGGG
1 TAATTCGGT
95611624 TAATTCGGT
1 TAATTCGGT
95611633 TAATTCGGT
1 TAATTCGGT
95611642 TAATT
1 TAATT
95611647 TTATACTTAT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
9 30 1.00
ACGTcount: A:0.24, C:0.10, G:0.22, T:0.44
Consensus pattern (9 bp):
TAATTCGGT
Found at i:95611776 original size:27 final size:28
Alignment explanation
Indices: 95611720--95611780 Score: 72
Period size: 29 Copynumber: 2.2 Consensus size: 28
95611710 GAATTAACCG
***
95611720 AAAAA-ATTTCGGTTCGGTTAATTTTTTT
1 AAAAATATTTCGGTTCGGTTAA-TCGGTT
95611748 AAAAATATTTCGGTTCGGTTAA-CGGTT
1 AAAAATATTTCGGTTCGGTTAATCGGTT
95611775 AAAAAT
1 AAAAAT
95611781 TTTGAAGGGT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
27 8 0.28
28 5 0.17
29 16 0.55
ACGTcount: A:0.34, C:0.08, G:0.16, T:0.41
Consensus pattern (28 bp):
AAAAATATTTCGGTTCGGTTAATCGGTT
Found at i:95616755 original size:3 final size:3
Alignment explanation
Indices: 95616747--95616781 Score: 52
Period size: 3 Copynumber: 11.7 Consensus size: 3
95616737 AGGCAACCCA
* *
95616747 TCT TCT TCT TCT TCT TCT TCT TCG TCA TCT TCT TC
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TC
95616782 ACTTGGTTTT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.03, C:0.34, G:0.03, T:0.60
Consensus pattern (3 bp):
TCT
Found at i:95618795 original size:18 final size:18
Alignment explanation
Indices: 95618772--95618829 Score: 57
Period size: 18 Copynumber: 3.2 Consensus size: 18
95618762 TAATGACTTG
95618772 TTTTATTAAATTTTAAAA
1 TTTTATTAAATTTTAAAA
* *
95618790 TTTTATGT-ACTTTT-TAA
1 TTTTAT-TAAATTTTAAAA
95618807 TTTTATTAAGATTTTTAAAA
1 TTTTATTAA-A-TTTTAAAA
95618827 TTT
1 TTT
95618830 GTAAGATTTA
Statistics
Matches: 31, Mismatches: 4, Indels: 8
0.72 0.09 0.19
Matches are distributed among these distances:
16 1 0.03
17 9 0.29
18 11 0.35
19 5 0.16
20 5 0.16
ACGTcount: A:0.34, C:0.02, G:0.03, T:0.60
Consensus pattern (18 bp):
TTTTATTAAATTTTAAAA
Found at i:95620991 original size:21 final size:22
Alignment explanation
Indices: 95620967--95621007 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
95620957 TAATAATACA
95620967 TTAAATTAAA-AAAATAAATTC
1 TTAAATTAAAGAAAATAAATTC
*
95620988 TTAATTTAAAGAAAATAAAT
1 TTAAATTAAAGAAAATAAAT
95621008 GTAATTATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 9 0.50
22 9 0.50
ACGTcount: A:0.61, C:0.02, G:0.02, T:0.34
Consensus pattern (22 bp):
TTAAATTAAAGAAAATAAATTC
Found at i:95621924 original size:17 final size:17
Alignment explanation
Indices: 95621902--95621935 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
95621892 GCTTAAATTT
95621902 AAATTATCATATTTGAA
1 AAATTATCATATTTGAA
95621919 AAATTATCATATTTGAA
1 AAATTATCATATTTGAA
95621936 GTACAAAGTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.47, C:0.06, G:0.06, T:0.41
Consensus pattern (17 bp):
AAATTATCATATTTGAA
Found at i:95630062 original size:13 final size:13
Alignment explanation
Indices: 95630044--95630068 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
95630034 TATGTGATAT
95630044 GTGTGAAAATTTC
1 GTGTGAAAATTTC
95630057 GTGTGAAAATTT
1 GTGTGAAAATTT
95630069 TATCGTTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.04, G:0.24, T:0.40
Consensus pattern (13 bp):
GTGTGAAAATTTC
Found at i:95631286 original size:42 final size:43
Alignment explanation
Indices: 95631225--95631323 Score: 119
Period size: 42 Copynumber: 2.3 Consensus size: 43
95631215 GATTTGAGAT
* * * *
95631225 TTACGTGTAAGACCATGTTTAGGACATTGGCGTCG-TATATGA
1 TTACATGTAAGACCATGTTTAGGACAGTGACATCGATATATGA
* * * *
95631267 TTTCATGTAAGACCCTGTTTGGGACAGTGACATCGATATTTGA
1 TTACATGTAAGACCATGTTTAGGACAGTGACATCGATATATGA
95631310 TTACATGTAAGACC
1 TTACATGTAAGACC
95631324 TCGTCTGGGA
Statistics
Matches: 47, Mismatches: 9, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
42 28 0.60
43 19 0.40
ACGTcount: A:0.27, C:0.16, G:0.23, T:0.33
Consensus pattern (43 bp):
TTACATGTAAGACCATGTTTAGGACAGTGACATCGATATATGA
Found at i:95631333 original size:43 final size:43
Alignment explanation
Indices: 95631172--95631342 Score: 134
Period size: 43 Copynumber: 4.0 Consensus size: 43
95631162 ATAGGATTTT
* * * * *
95631172 GATATGTGATTTCGTGTAAGACCACGTCTGGGACATTGGTATC
1 GATATTTGATTACATGTAAGACCTCGTCTGGGACATTGGCATC
* * * * *
95631215 GAT-TTGAGATTTACGTGTAAGACCAT-GTTTAGGACATTGGCGTC
1 GATATT-TGA-TTACATGTAAGACC-TCGTCTGGGACATTGGCATC
* * * * *
95631259 G-TATATGATTTCATGTAAGACC-CTGTTTGGGACAGTGACATC
1 GATATTTGATTACATGTAAGACCTC-GTCTGGGACATTGGCATC
*
95631301 GATATTTGATTACATGTAAGACCTCGTCTGGGACGTTGGCAT
1 GATATTTGATTACATGTAAGACCTCGTCTGGGACATTGGCAT
95631343 TGTACAAGCT
Statistics
Matches: 98, Mismatches: 22, Indels: 16
0.72 0.16 0.12
Matches are distributed among these distances:
42 28 0.29
43 40 0.41
44 30 0.31
ACGTcount: A:0.25, C:0.16, G:0.26, T:0.33
Consensus pattern (43 bp):
GATATTTGATTACATGTAAGACCTCGTCTGGGACATTGGCATC
Found at i:95636463 original size:12 final size:11
Alignment explanation
Indices: 95636448--95636488 Score: 55
Period size: 12 Copynumber: 3.5 Consensus size: 11
95636438 TTGATTTATA
95636448 TTTGAATTATTT
1 TTTGAATT-TTT
95636460 TTTGAACTTTTT
1 TTTGAA-TTTTT
*
95636472 TTTGAACTTTT
1 TTTGAATTTTT
95636483 TTTGAA
1 TTTGAA
95636489 CTCGTAAATT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
11 10 0.37
12 15 0.56
13 2 0.07
ACGTcount: A:0.22, C:0.05, G:0.10, T:0.63
Consensus pattern (11 bp):
TTTGAATTTTT
Found at i:95636471 original size:11 final size:11
Alignment explanation
Indices: 95636457--95636490 Score: 59
Period size: 11 Copynumber: 3.0 Consensus size: 11
95636447 ATTTGAATTA
95636457 TTTTTTGAACTT
1 TTTTTTGAAC-T
95636469 TTTTTTGAACT
1 TTTTTTGAACT
95636480 TTTTTTGAACT
1 TTTTTTGAACT
95636491 CGTAAATTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
11 12 0.55
12 10 0.45
ACGTcount: A:0.18, C:0.09, G:0.09, T:0.65
Consensus pattern (11 bp):
TTTTTTGAACT
Found at i:95637702 original size:37 final size:38
Alignment explanation
Indices: 95637633--95637722 Score: 119
Period size: 37 Copynumber: 2.4 Consensus size: 38
95637623 TTTTGATATG
* * *
95637633 ACAATATTAAAAACCAATTATGAACAAGAAAATTTTGAA
1 ACAAGATTAAAAA-CAATTACGAACAAAAAAATTTTGAA
* *
95637672 ACAGGATTAAAAA-AATTACGAATAAAAAAATTTTGAA
1 ACAAGATTAAAAACAATTACGAACAAAAAAATTTTGAA
95637709 ACAAGATTAAAAAC
1 ACAAGATTAAAAAC
95637723 CAAATACAAA
Statistics
Matches: 44, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
37 33 0.75
39 11 0.25
ACGTcount: A:0.59, C:0.09, G:0.09, T:0.23
Consensus pattern (38 bp):
ACAAGATTAAAAACAATTACGAACAAAAAAATTTTGAA
Found at i:95644177 original size:46 final size:44
Alignment explanation
Indices: 95644077--95644184 Score: 135
Period size: 44 Copynumber: 2.4 Consensus size: 44
95644067 TGTCTTTGAC
** * * *
95644077 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATACAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATACAAT
* *
95644121 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCGTATTTCTAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATA-TAC-AAT
95644167 ATGGACTTACATGGCTCA
1 ATGGACTTACATGGCTCA
95644185 TTTCTGTTCT
Statistics
Matches: 55, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
44 32 0.58
45 2 0.04
46 21 0.38
ACGTcount: A:0.29, C:0.24, G:0.15, T:0.32
Consensus pattern (44 bp):
ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATACAAT
Found at i:95651022 original size:44 final size:45
Alignment explanation
Indices: 95650969--95651071 Score: 127
Period size: 44 Copynumber: 2.3 Consensus size: 45
95650959 TGTCTTTGAC
* * *
95650969 ATGGACTTACATGAATTATTCCTATCTCCAATGCCATA-TATAAT
1 ATGGACTTACATGAATCAATCCTATCTCCAAAGCCATATTATAAT
* * * *
95651013 ATGGACTTACATGACTCAATCCTGTCTCCAAAGCTATATTTCTAAT
1 ATGGACTTACATGAATCAATCCTATCTCCAAAGCCATA-TTATAAT
95651059 ATGGACTTACATG
1 ATGGACTTACATG
95651072 GCTCATTTCT
Statistics
Matches: 50, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
44 32 0.64
46 18 0.36
ACGTcount: A:0.32, C:0.21, G:0.12, T:0.35
Consensus pattern (45 bp):
ATGGACTTACATGAATCAATCCTATCTCCAAAGCCATATTATAAT
Found at i:95658623 original size:56 final size:55
Alignment explanation
Indices: 95658506--95658625 Score: 159
Period size: 56 Copynumber: 2.2 Consensus size: 55
95658496 GGGTGTTGAG
* ** * *
95658506 ATATTATCTTTTAGCAATTTGATTCCTATGGGATATTATAAGATATTACTATGGA
1 ATATTATCTCTTAGCAATTTGATTCCTATAAGATATTACAAGATATTACTATAGA
* * *
95658561 ATATTATCTCTTAGCAATTTGATTCCTAATAAGATATTACAGGATATTATTATAGT
1 ATATTATCTCTTAGCAATTTGATTCCT-ATAAGATATTACAAGATATTACTATAGA
95658617 ATATTATCT
1 ATATTATCT
95658626 TTTGTAATCC
Statistics
Matches: 56, Mismatches: 8, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
55 26 0.46
56 30 0.54
ACGTcount: A:0.34, C:0.10, G:0.12, T:0.44
Consensus pattern (55 bp):
ATATTATCTCTTAGCAATTTGATTCCTATAAGATATTACAAGATATTACTATAGA
Found at i:95659682 original size:3 final size:3
Alignment explanation
Indices: 95659674--95659698 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
95659664 GCAAAATATG
95659674 TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT T
95659699 TTTTATCATG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:95678582 original size:42 final size:42
Alignment explanation
Indices: 95678523--95679077 Score: 154
Period size: 42 Copynumber: 12.9 Consensus size: 42
95678513 GATGTTCATA
95678523 AGATCTTAAACCCCTAAGCAGTAGGGTAACAGACCAAATTAC
1 AGATCTTAAACCCCTAAGCAGTAGGGTAACAGACCAAATTAC
* * * * *
95678565 AGATCTTAATCCCCTAAGTAGTAGGGAAACAGATCAAA--AG
1 AGATCTTAAACCCCTAAGCAGTAGGGTAACAGACCAAATTAC
* * *
95678605 TGATGGGCTTTAACCCCCTAAGCAGTAGGGTAACA-AGCTAAATTTAC
1 AGAT---C-TTAAACCCCTAAGCAGTAGGGTAACAGA-CCAAA-TTAC
* * **** *
95678652 A-AGCCTTAAACCCCTAAGCAGTAGGGTAATAGGTTGAATTCC
1 AGA-TCTTAAACCCCTAAGCAGTAGGGTAACAGACCAAATTAC
* * * * *
95678694 AGATCTT-ATCTCCCTAAGCAGTAGTGG-AGCAGATCGAA-GAC
1 AGATCTTAAAC-CCCTAAGCAGTAG-GGTAACAGACCAAATTAC
* * * **** *
95678735 GAAGAACCTTAAACCCCTGAGCAGTAGGGTAATAGGTTGAATTGC
1 --AG-ATCTTAAACCCCTAAGCAGTAGGGTAACAGACCAAATTAC
* * * ** *
95678780 AGATCTT-ATCTCCCTAAGCAGTAGTGG-AGCAGATCGAAGACGAA
1 AGATCTTAAAC-CCCTAAGCAGTAG-GGTAACAGA-CCAA-ATTAC
* * **** *
95678824 AAACCTTAAAACCCCTAAGCAGTAGGGTAACAGGTTGAATTGC
1 AGATCTT-AAACCCCTAAGCAGTAGGGTAACAGACCAAATTAC
* * * * * *
95678867 AGATCTT-ATCTCCCTAAGCAATAGTGG-AGCAGATCGAA-GAC
1 AGATCTTAAAC-CCCTAAGCAGTAG-GGTAACAGACCAAATTAC
* *** *
95678908 GAAGAACCTTAAAACCCCTAAGCAGTAGGGTAACAGGTTAAATTGC
1 --AG-ATCTT-AAACCCCTAAGCAGTAGGGTAACAGACCAAATTAC
*
95678954 AGATCTT-ATCTCCCTAAGCAGTAGTGG-AACAGACCGAAA--AC
1 AGATCTTAAAC-CCCTAAGCAGTAG-GGTAACAGACC-AAATTAC
* * *** **
95678995 GAGGAACCTTAAACCCCAAAGCAGTAGGGTAACAGGTTGAGTTTAC
1 -A-G-ATCTTAAACCCCTAAGCAGTAGGGTAACA-GACCAAATTAC
* * *
95679041 AGATC-TAAAACCCTAAGCAGTAGGGAAACAGATCAAA
1 AGATCTTAAACCCCTAAGCAGTAGGGTAACAGACCAAA
95679078 GATGACAAGC
Statistics
Matches: 365, Mismatches: 102, Indels: 93
0.65 0.18 0.17
Matches are distributed among these distances:
40 4 0.01
41 14 0.04
42 141 0.39
43 65 0.18
44 89 0.24
45 43 0.12
46 8 0.02
47 1 0.00
ACGTcount: A:0.37, C:0.21, G:0.22, T:0.21
Consensus pattern (42 bp):
AGATCTTAAACCCCTAAGCAGTAGGGTAACAGACCAAATTAC
Found at i:95678728 original size:129 final size:130
Alignment explanation
Indices: 95678481--95678717 Score: 329
Period size: 129 Copynumber: 1.8 Consensus size: 130
95678471 AAACCACCAA
* * *
95678481 GCTTTAACCCCTAAGCAGTAGGGTAACAAGCTGATGTTCATAAGATCTTAAACCCCTAAGCAGTA
1 GCTTTAACCCCTAAGCAGTAGGGTAACAAGCTAATGTTCACAAGACCTTAAACCCCTAAGCAGTA
*
95678546 GGGTAACAGACCAAATTACAGATCTTAATCCCCTAAGTAGTAGGGAAACAGATCAAAAGTGATGG
66 GGGTAACAGACCAAATTACAGATCTTAATCCCCTAAGCAGTAGGGAAACAGATCAAAAGTGATGG
95678611 GCTTTAACCCCCTAAGCAGTAGGGTAACAAGCTAAAT-TT-ACAAG-CCTTAAACCCCTAAGCAG
1 GCTTTAA-CCCCTAAGCAGTAGGGTAACAAGCT-AATGTTCACAAGACCTTAAACCCCTAAGCAG
* **** *
95678673 TAGGGTAATAGGTTGAATTCCAGATCTT-ATCTCCCTAAGCAGTAG
64 TAGGGTAACAGACCAAATTACAGATCTTAATC-CCCTAAGCAGTAG
95678718 TGGAGCAGAT
Statistics
Matches: 94, Mismatches: 10, Indels: 7
0.85 0.09 0.06
Matches are distributed among these distances:
128 3 0.03
129 51 0.54
130 11 0.12
131 27 0.29
132 2 0.02
ACGTcount: A:0.35, C:0.22, G:0.20, T:0.24
Consensus pattern (130 bp):
GCTTTAACCCCTAAGCAGTAGGGTAACAAGCTAATGTTCACAAGACCTTAAACCCCTAAGCAGTA
GGGTAACAGACCAAATTACAGATCTTAATCCCCTAAGCAGTAGGGAAACAGATCAAAAGTGATGG
Found at i:95678752 original size:129 final size:131
Alignment explanation
Indices: 95678486--95678766 Score: 313
Period size: 129 Copynumber: 2.2 Consensus size: 131
95678476 ACCAAGCTTT
* * *
95678486 AACCCCTAAGCAGTAGGGTAACAAGCTGATGTTCATAAGATCTTAAACCCCTAAGCAGTAGGGTA
1 AACCCCTAAGCAGTAGGGTAACAAGCTAATGTTCACAAGACCTTAAACCCCTAAGCAGTAGGGTA
* * * ** *
95678551 ACAGACCAAATTACAGATCTTAATCCCCTAAGTAGTAGGGAAACAGATCAAAAGTGATGGGCTTT
66 ACAGACCAAATTACAGATCTTAATCCCCTAAGCAGTAGGGAAACAGATCAAAAGCGAAGAACCTT
95678616 A
131 A
*
95678617 ACCCCCTAAGCAGTAGGGTAACAAGCTAAAT-TT-ACAAG-CCTTAAACCCCTAAGCAGTAGGGT
1 AACCCCTAAGCAGTAGGGTAACAAGCT-AATGTTCACAAGACCTTAAACCCCTAAGCAGTAGGGT
* **** * * *
95678679 AATAGGTTGAATTCCAGATCTT-ATCTCCCTAAGCAGTAGTGG-AGCAGATC-GAAGACGAAGAA
65 AACAGACCAAATTACAGATCTTAATC-CCCTAAGCAGTAG-GGAAACAGATCAAAAG-CGAAGAA
95678741 CCTTA
127 CCTTA
*
95678746 AACCCCTGAGCAGTAGGGTAA
1 AACCCCTAAGCAGTAGGGTAA
95678767 TAGGTTGAAT
Statistics
Matches: 126, Mismatches: 20, Indels: 10
0.81 0.13 0.06
Matches are distributed among these distances:
128 6 0.05
129 84 0.67
130 6 0.05
131 28 0.22
132 2 0.02
ACGTcount: A:0.36, C:0.21, G:0.21, T:0.21
Consensus pattern (131 bp):
AACCCCTAAGCAGTAGGGTAACAAGCTAATGTTCACAAGACCTTAAACCCCTAAGCAGTAGGGTA
ACAGACCAAATTACAGATCTTAATCCCCTAAGCAGTAGGGAAACAGATCAAAAGCGAAGAACCTT
A
Found at i:95678861 original size:173 final size:173
Alignment explanation
Indices: 95678655--95679034 Score: 636
Period size: 173 Copynumber: 2.2 Consensus size: 173
95678645 AATTTACAAG
* *
95678655 CCTTAAACCCCTAAGCAGTAGGGTAATAGGTTGAATTCCAGATCTTATCTCCCTAAGCAGTAGTG
1 CCTTAAACCCCTAAGCAGTAGGGTAACAGGTTGAATTCCAGATCTTATCTCCCTAAGCAATAGTG
* * *
95678720 GAGCAGATCGAAGACGAAGAACCTT-AAACCCCTGAGCAGTAGGGTAATAGGTTGAATTGCAGAT
66 GAGCAGATCGAAGACGAAGAACCTTAAAACCCCTAAGCAGTAGGGTAACAGGTTAAATTGCAGAT
* * *
95678784 CTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGAAAAA
131 CTTATCTCCCTAAGCAGTAGTGGAACAGACCGAAAACGAAAAA
*
95678827 CCTTAAAACCCCTAAGCAGTAGGGTAACAGGTTGAATTGCAGATCTTATCTCCCTAAGCAATAGT
1 CCTT-AAACCCCTAAGCAGTAGGGTAACAGGTTGAATTCCAGATCTTATCTCCCTAAGCAATAGT
95678892 GGAGCAGATCGAAGACGAAGAACCTTAAAACCCCTAAGCAGTAGGGTAACAGGTTAAATTGCAGA
65 GGAGCAGATCGAAGACGAAGAACCTTAAAACCCCTAAGCAGTAGGGTAACAGGTTAAATTGCAGA
**
95678957 TCTTATCTCCCTAAGCAGTAGTGGAACAGACCGAAAACGAGGAA
130 TCTTATCTCCCTAAGCAGTAGTGGAACAGACCGAAAACGAAAAA
*
95679001 CCTTAAACCCCAAAGCAGTAGGGTAACAGGTTGA
1 CCTTAAACCCCTAAGCAGTAGGGTAACAGGTTGA
95679035 GTTTACAGAT
Statistics
Matches: 194, Mismatches: 12, Indels: 3
0.93 0.06 0.01
Matches are distributed among these distances:
172 4 0.02
173 112 0.58
174 78 0.40
ACGTcount: A:0.35, C:0.21, G:0.23, T:0.21
Consensus pattern (173 bp):
CCTTAAACCCCTAAGCAGTAGGGTAACAGGTTGAATTCCAGATCTTATCTCCCTAAGCAATAGTG
GAGCAGATCGAAGACGAAGAACCTTAAAACCCCTAAGCAGTAGGGTAACAGGTTAAATTGCAGAT
CTTATCTCCCTAAGCAGTAGTGGAACAGACCGAAAACGAAAAA
Found at i:95679072 original size:86 final size:86
Alignment explanation
Indices: 95678655--95679034 Score: 634
Period size: 87 Copynumber: 4.4 Consensus size: 86
95678645 AATTTACAAG
* *
95678655 CCTTAAACCCCTAAGCAGTAGGGTAATAGGTTGAATTCCAGATCTTATCTCCCTAAGCAGTAGTG
1 CCTTAAACCCCTAAGCAGTAGGGTAACAGGTTGAATTGCAGATCTTATCTCCCTAAGCAGTAGTG
95678720 GAGCAGATCGAAGACGAAGAA
66 GAGCAGATCGAAGACGAAGAA
* *
95678741 CCTTAAACCCCTGAGCAGTAGGGTAATAGGTTGAATTGCAGATCTTATCTCCCTAAGCAGTAGTG
1 CCTTAAACCCCTAAGCAGTAGGGTAACAGGTTGAATTGCAGATCTTATCTCCCTAAGCAGTAGTG
*
95678806 GAGCAGATCGAAGACGAAAAA
66 GAGCAGATCGAAGACGAAGAA
*
95678827 CCTTAAAACCCCTAAGCAGTAGGGTAACAGGTTGAATTGCAGATCTTATCTCCCTAAGCAATAGT
1 CCTT-AAACCCCTAAGCAGTAGGGTAACAGGTTGAATTGCAGATCTTATCTCCCTAAGCAGTAGT
95678892 GGAGCAGATCGAAGACGAAGAA
65 GGAGCAGATCGAAGACGAAGAA
*
95678914 CCTTAAAACCCCTAAGCAGTAGGGTAACAGGTTAAATTGCAGATCTTATCTCCCTAAGCAGTAGT
1 CCTT-AAACCCCTAAGCAGTAGGGTAACAGGTTGAATTGCAGATCTTATCTCCCTAAGCAGTAGT
* * * *
95678979 GGAACAGACCGAAAACGAGGAA
65 GGAGCAGATCGAAGACGAAGAA
*
95679001 CCTTAAACCCCAAAGCAGTAGGGTAACAGGTTGA
1 CCTTAAACCCCTAAGCAGTAGGGTAACAGGTTGA
95679035 GTTTACAGAT
Statistics
Matches: 278, Mismatches: 15, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
86 115 0.41
87 163 0.59
ACGTcount: A:0.35, C:0.21, G:0.23, T:0.21
Consensus pattern (86 bp):
CCTTAAACCCCTAAGCAGTAGGGTAACAGGTTGAATTGCAGATCTTATCTCCCTAAGCAGTAGTG
GAGCAGATCGAAGACGAAGAA
Found at i:95679092 original size:86 final size:85
Alignment explanation
Indices: 95678655--95679079 Score: 568
Period size: 87 Copynumber: 4.9 Consensus size: 85
95678645 AATTTACAAG
* *
95678655 CCTTAAACCCCTAAGCAGTAGGGTAATAGGTTGAATTCCAGATCTTATCTCCCTAAGCAGTAGTG
1 CCTTAAACCCCTAAGCAGTAGGGTAACAGGTTGAATTGCAGATCTTATCTCCCTAAGCAGTAGTG
* *
95678720 GAGCAGATCGAAGACGAAGAA
66 GAACAGATCAAAGACGAA-AA
* *
95678741 CCTTAAACCCCTGAGCAGTAGGGTAATAGGTTGAATTGCAGATCTTATCTCCCTAAGCAGTAGTG
1 CCTTAAACCCCTAAGCAGTAGGGTAACAGGTTGAATTGCAGATCTTATCTCCCTAAGCAGTAGTG
* *
95678806 GAGCAGATCGAAGACGAAAAA
66 GAACAGATCAAAGACG-AAAA
*
95678827 CCTTAAAACCCCTAAGCAGTAGGGTAACAGGTTGAATTGCAGATCTTATCTCCCTAAGCAATAGT
1 CCTT-AAACCCCTAAGCAGTAGGGTAACAGGTTGAATTGCAGATCTTATCTCCCTAAGCAGTAGT
* *
95678892 GGAGCAGATCGAAGACGAAGAA
65 GGAACAGATCAAAGACGAA-AA
*
95678914 CCTTAAAACCCCTAAGCAGTAGGGTAACAGGTTAAATTGCAGATCTTATCTCCCTAAGCAGTAGT
1 CCTT-AAACCCCTAAGCAGTAGGGTAACAGGTTGAATTGCAGATCTTATCTCCCTAAGCAGTAGT
* *
95678979 GGAACAGACCGAAA-ACGAGGAA
65 GGAACAGATC-AAAGACGA-AAA
* * * ***
95679001 CCTTAAACCCCAAAGCAGTAGGGTAACAGGTTGAGTTTACAGATC-TAAAACCCTAAGCAGTAG-
1 CCTTAAACCCCTAAGCAGTAGGGTAACAGGTTGA-ATTGCAGATCTTATCTCCCTAAGCAGTAGT
95679064 GGAAACAGATCAAAGA
65 GG-AACAGATCAAAGA
95679080 TGACAAGCCT
Statistics
Matches: 312, Mismatches: 19, Indels: 16
0.90 0.05 0.05
Matches are distributed among these distances:
85 5 0.02
86 138 0.44
87 167 0.54
88 2 0.01
ACGTcount: A:0.36, C:0.21, G:0.23, T:0.20
Consensus pattern (85 bp):
CCTTAAACCCCTAAGCAGTAGGGTAACAGGTTGAATTGCAGATCTTATCTCCCTAAGCAGTAGTG
GAACAGATCAAAGACGAAAA
Found at i:95690492 original size:15 final size:15
Alignment explanation
Indices: 95690472--95690503 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
95690462 CTCCATTTTG
95690472 TTTATATTAGGATAA
1 TTTATATTAGGATAA
95690487 TTTATATTAGGATAA
1 TTTATATTAGGATAA
95690502 TT
1 TT
95690504 ATTAGGATTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.38, C:0.00, G:0.12, T:0.50
Consensus pattern (15 bp):
TTTATATTAGGATAA
Found at i:95700504 original size:2 final size:2
Alignment explanation
Indices: 95700446--95700485 Score: 55
Period size: 2 Copynumber: 20.0 Consensus size: 2
95700436 TATTACATAA
*
95700446 AT AT AT ACT -T AT AT AT AT AT AT AT AC AT AT AT AT AT AT AT
1 AT AT AT A-T AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
95700486 TAAAGATATG
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
1 1 0.03
2 32 0.94
3 1 0.03
ACGTcount: A:0.47, C:0.05, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:95700913 original size:3 final size:3
Alignment explanation
Indices: 95700893--95700987 Score: 165
Period size: 3 Copynumber: 32.0 Consensus size: 3
95700883 GTATATGCAT
* *
95700893 ATA ATA AAA AT- ATT ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
95700940 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
95700988 TGAAAATACA
Statistics
Matches: 88, Mismatches: 3, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
2 2 0.02
3 86 0.98
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:95701491 original size:14 final size:16
Alignment explanation
Indices: 95701465--95701499 Score: 56
Period size: 15 Copynumber: 2.3 Consensus size: 16
95701455 AAAAAAAGGA
95701465 GAGAAAGGGAGA-GGG
1 GAGAAAGGGAGAGGGG
95701480 GAGAAA-GGAGAGGGG
1 GAGAAAGGGAGAGGGG
95701495 GAGAA
1 GAGAA
95701500 GAGAAGGCTC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 5 0.26
15 14 0.74
ACGTcount: A:0.43, C:0.00, G:0.57, T:0.00
Consensus pattern (16 bp):
GAGAAAGGGAGAGGGG
Found at i:95702888 original size:61 final size:61
Alignment explanation
Indices: 95702781--95702909 Score: 163
Period size: 61 Copynumber: 2.1 Consensus size: 61
95702771 AAAACAAAAG
** ** *
95702781 TTGAAAATACCTCATCAAGTGAACTGAGGCTCAACTCATTTCTCGCAATATGGGTTGA-CT
1 TTGAAAATACCTCATCAAGTGAACCAAGGCTCAACTCACATCTCGCAATATGAGTTGATCT
* *
95702841 TTGAAAATACCTCGA-CATGTGAACCCAAGGCTCAACTCACATCTCGCAATATGAGTTGATTT
1 TTGAAAATACCTC-ATCAAGTGAA-CCAAGGCTCAACTCACATCTCGCAATATGAGTTGATCT
95702903 TTGAAAA
1 TTGAAAA
95702910 ATATAAATTG
Statistics
Matches: 59, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
60 20 0.34
61 31 0.53
62 8 0.14
ACGTcount: A:0.33, C:0.22, G:0.17, T:0.29
Consensus pattern (61 bp):
TTGAAAATACCTCATCAAGTGAACCAAGGCTCAACTCACATCTCGCAATATGAGTTGATCT
Found at i:95702922 original size:14 final size:14
Alignment explanation
Indices: 95702903--95702965 Score: 56
Period size: 14 Copynumber: 4.5 Consensus size: 14
95702893 GAGTTGATTT
* *
95702903 TTGAAAAATATAAA
1 TTGAAAAACAGAAA
95702917 TTGAAAAAACAGAAA
1 TTG-AAAAACAGAAA
* *
95702932 TTGAAAAGCAAAAA
1 TTGAAAAACAGAAA
* *
95702946 TT-AAGAACAGAAT
1 TTGAAAAACAGAAA
95702959 TTGAAAA
1 TTGAAAA
95702966 GACCTCAGTG
Statistics
Matches: 38, Mismatches: 9, Indels: 4
0.75 0.18 0.08
Matches are distributed among these distances:
13 9 0.24
14 17 0.45
15 12 0.32
ACGTcount: A:0.62, C:0.05, G:0.13, T:0.21
Consensus pattern (14 bp):
TTGAAAAACAGAAA
Found at i:95703080 original size:74 final size:73
Alignment explanation
Indices: 95702953--95703171 Score: 269
Period size: 74 Copynumber: 2.9 Consensus size: 73
95702943 AAATTAAGAA
* * * *
95702953 CAGAATTTGAAAAGACCTCAGTGTGTGGCCCGAGACTCAACTCACCTCTCGCAATATGAGTTGAT
1 CAGAAATTGAAAAG-CCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
95703018 TTTGAAAAG
65 TTTGAAAAG
* *
95703027 TAGAAATTGAAAACGCCTCAGCGTGTGACCCGAGGCTCAACTCATCTCTCGCAATATGAGTTGAT
1 CAGAAATTGAAAA-GCCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-
95703092 TCTTTTGAAAAG
64 --TTTTGAAAAG
** * **
95703104 CAGAAATTGAAAATAG-CTCAGCACGTGAGCAAAGGCTCAACTCACCTCTCGCAATATGAGTTGA
1 CAGAAATTG-AAA-AGCCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
95703168 TTTT
64 TTTT
95703172 TTGAAACTTA
Statistics
Matches: 126, Mismatches: 13, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
74 60 0.48
75 1 0.01
77 60 0.48
78 4 0.03
79 1 0.01
ACGTcount: A:0.32, C:0.22, G:0.21, T:0.26
Consensus pattern (73 bp):
CAGAAATTGAAAAGCCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
TTGAAAAG
Found at i:95703140 original size:77 final size:76
Alignment explanation
Indices: 95702988--95703177 Score: 269
Period size: 77 Copynumber: 2.5 Consensus size: 76
95702978 TGGCCCGAGA
* * **
95702988 CTCAACTCACCTCTCGCAATATGAGTTGA--TTTTGAAAAGTAGAAATTGAAAACGCCTCAGCGT
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAGCAGAAATTGAAAAAGCCTCAGCAC
**
95703051 GTGACCCGAGG
66 GTGACCAAAGG
*
95703062 CTCAACTCATCTCTCGCAATATGAGTTGATTCTTTTGAAAAGCAGAAATTGAAAATAG-CTCAGC
1 CTCAACTCACCTCTCGCAATATGAGTTGATT-TTTTGAAAAGCAGAAATTGAAAA-AGCCTCAGC
*
95703126 ACGTGAGCAAAGG
64 ACGTGACCAAAGG
95703139 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAA
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAA
95703178 CTTAACTTGA
Statistics
Matches: 103, Mismatches: 9, Indels: 6
0.87 0.08 0.05
Matches are distributed among these distances:
74 28 0.27
76 8 0.08
77 66 0.64
78 1 0.01
ACGTcount: A:0.32, C:0.22, G:0.19, T:0.27
Consensus pattern (76 bp):
CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAGCAGAAATTGAAAAAGCCTCAGCAC
GTGACCAAAGG
Found at i:95703381 original size:239 final size:240
Alignment explanation
Indices: 95702988--95703518 Score: 631
Period size: 239 Copynumber: 2.2 Consensus size: 240
95702978 TGGCCCGAGA
* * **
95702988 CTCAACTCACCTCTCGCAATATGAGTTGATTTTG-AAAAGTAGAAATTGAAAACGCCTCAGCGTG
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAAAGCAGAAATTGAAAACACCTCAGCACG
95703052 TGACCCGAGGCTCAACTCATCTCTCGCAATATGAGTTGATTCTTTTGAAAAGCAGAAATTGAAAA
66 TGACCCGAGGCTCAACTCATCTCTCGCAATATGAGTTGATTCTTTTGAAAAGCAGAAATTGAAAA
* *
95703117 TAGCTCAGCACGTGAGCAAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT-TT-G-AAAC
131 TACCTCA-CACGTGAGCAAAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTCTTGGAAAAC
* ** *
95703179 -TTAACTTGAAAAGCAGATTTTGAAAATACCTCGATATGTG-ACTGAAGG
195 ATGAA-TTGAAAAGCAGAAATTGAAAATACCTC-A-ACGTGCACTG-AGG
* *
95703227 TTCAACTCACCTCTCGCAATATGAGTTGATTTTGACAAACAGAAACAGAAATTGAAAATACCTCA
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTTGA-AAA-AG---CAGAAATTGAAAACACCTCA
* * * *
95703292 GCACGTGAGCCGAGGCTCAACTCA-CTTCTTGCAATATGGGTTGA-T-TTTTG-AAA-CATAAAT
61 GCACGTGACCCGAGGCTCAACTCATC-TCTCGCAATATGAGTTGATTCTTTTGAAAAGCAGAAAT
* * ** *
95703352 TGAAATTACCTCA-ACGTG-TCTTGAGGCTCAACTCATCTCTCGCAATATGAGCTGATTTTCTTG
125 TGAAAATACCTCACACGTGAGC-AAAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTCTTG
* *
95703415 GAAAACATGAATTGAAAAGCAGAAATTGAAAATACCTCAGCGTGCCCTGAGG
189 GAAAACATGAATTGAAAAGCAGAAATTGAAAATACCTCAACGTGCACTGAGG
* *
95703467 CTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAAAAGTAGAAATT-AAAA
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAAAGCAGAAATTGAAAA
95703519 GGTTCAACTC
Statistics
Matches: 253, Mismatches: 26, Indels: 31
0.82 0.08 0.10
Matches are distributed among these distances:
234 4 0.02
235 7 0.03
238 3 0.01
239 75 0.30
240 41 0.16
241 25 0.10
242 34 0.13
243 8 0.03
244 2 0.01
245 54 0.21
ACGTcount: A:0.34, C:0.20, G:0.18, T:0.28
Consensus pattern (240 bp):
CTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAAAGCAGAAATTGAAAACACCTCAGCACG
TGACCCGAGGCTCAACTCATCTCTCGCAATATGAGTTGATTCTTTTGAAAAGCAGAAATTGAAAA
TACCTCACACGTGAGCAAAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTCTTGGAAAACA
TGAATTGAAAAGCAGAAATTGAAAATACCTCAACGTGCACTGAGG
Found at i:95703397 original size:71 final size:72
Alignment explanation
Indices: 95703268--95703410 Score: 175
Period size: 71 Copynumber: 2.0 Consensus size: 72
95703258 TTGACAAACA
* * *
95703268 GAAACAGAAATTGAAAATACCTCAGCACGTGAGCCGAGGCTCAACTCACTTCTTGCAATATGGGT
1 GAAACAGAAATTGAAAATACCTCA-CACGTGAGCCGAGGCTCAACTCACTTCTCGCAATATGAGC
95703333 TGATTTTT
65 TGATTTTT
* * * *
95703341 GAAACATAAATTGAAATTACCTCA-ACGTG-TCTTGAGGCTCAACTCA-TCTCTCGCAATATGAG
1 GAAACAGAAATTGAAAATACCTCACACGTGAGC-CGAGGCTCAACTCACT-TCTCGCAATATGAG
95703403 CTGATTTT
64 CTGATTTT
95703411 CTTGGAAAAC
Statistics
Matches: 61, Mismatches: 7, Indels: 6
0.82 0.09 0.08
Matches are distributed among these distances:
70 2 0.03
71 37 0.61
73 22 0.36
ACGTcount: A:0.31, C:0.21, G:0.18, T:0.29
Consensus pattern (72 bp):
GAAACAGAAATTGAAAATACCTCACACGTGAGCCGAGGCTCAACTCACTTCTCGCAATATGAGCT
GATTTTT
Found at i:95703748 original size:285 final size:285
Alignment explanation
Indices: 95703303--95703980 Score: 1211
Period size: 285 Copynumber: 2.4 Consensus size: 285
95703293 CACGTGAGCC
* * * * *
95703303 GAGGCTCAACTCACTTCTTGCAATATGGGTTGA--TTTTTG-AAACATAAATTGAAATTACCTCA
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGTCAACAGAAATTGAAATTACCTCA
* ** * * *
95703365 ACGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAGCTGAT-TTTCTTGGAAAACATGAATTG
66 GCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATCTTTCTTGAAAAACATGAATTG
* *
95703429 AAAAGCAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTT
131 AAAAGCAGAAATTAAAAATACCTCAGCATGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTT
95703494 GATTTTGAAAAAGTAGAAATTAAAAGGTTCAACTCACCTCTCGCAATATGAGTTGATTCTTGACA
196 GATTTTGAAAAAGTAGAAATTAAAAGGTTCAACTCACCTCTCGCAATATGAGTTGATTCTTGACA
95703559 AACAGAAATTACCTCATTGTGTCTT
261 AACAGAAATTACCTCATTGTGTCTT
95703584 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGTCAACAGAAATTGAAATTACCTCA
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGTCAACAGAAATTGAAATTACCTCA
95703649 GCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATCTTTCTTGAAAAACATGAATTG
66 GCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATCTTTCTTGAAAAACATGAATTG
95703714 AAAAGCAGAAATTAAAAATACCTCAGCATGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTT
131 AAAAGCAGAAATTAAAAATACCTCAGCATGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTT
95703779 GATTTTGAAAAAGTAGAAATTAAAAGGTTCAACTCACCTCTCGCAATATGAGTTGATTCTTGACA
196 GATTTTGAAAAAGTAGAAATTAAAAGGTTCAACTCACCTCTCGCAATATGAGTTGATTCTTGACA
95703844 AACAGAAATTACCTCATTGTGTCTT
261 AACAGAAATTACCTCATTGTGTCTT
95703869 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGTCAACAGAAATTGAAATTACCTCA
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGTCAACAGAAATTGAAATTACCTCA
95703934 GCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATCTTT
66 GCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATCTTT
95703981 GAAACATAAA
Statistics
Matches: 380, Mismatches: 13, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
281 30 0.08
283 6 0.02
284 59 0.16
285 285 0.75
ACGTcount: A:0.31, C:0.21, G:0.17, T:0.30
Consensus pattern (285 bp):
GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGTCAACAGAAATTGAAATTACCTCA
GCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATCTTTCTTGAAAAACATGAATTG
AAAAGCAGAAATTAAAAATACCTCAGCATGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTT
GATTTTGAAAAAGTAGAAATTAAAAGGTTCAACTCACCTCTCGCAATATGAGTTGATTCTTGACA
AACAGAAATTACCTCATTGTGTCTT
Found at i:95704195 original size:71 final size:71
Alignment explanation
Indices: 95703807--95704187 Score: 486
Period size: 71 Copynumber: 5.3 Consensus size: 71
95703797 ATTAAAAGGT
* **
95703807 TCAACTCACCTCTCGCAATATGAGTTGATTCTTG--ACA-AACA--GAAATTACCTCATTGTGTC
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAACATAA-ATTGAAATTACCTCAACGTGTC
95703867 TTGAGGC
65 TTGAGGC
* * *
95703874 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGTCAACAGAAATTGAAATTACCTCAGCGTG
1 TCAACTCACCTCTCGCAATATGAGTTGA--TTTTTG-AAACATAAATTGAAATTACCTCAACGTG
**
95703939 TCCCGAGGC
63 TCTTGAGGC
*
95703948 TCAACTCACCTCTCGCAATATGAGTTGATCTTTGAAACATAAATTGAAATTACCTCAACGTGTCT
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAACATAAATTGAAATTACCTCAACGTGTCT
95704013 TGAGGC
66 TGAGGC
* * *
95704019 TCAACTCACCTCTCGCAATATGAGTTGATTTTAGATTTA-ATAGGAATTGAAATTACCTCAGCGT
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGA--AACATA--AATTGAAATTACCTCAACGT
* ** *
95704083 GCCCCGAGGT
62 GTCTTGAGGC
* *
95704093 TCAACTCACTTCTCGCGATATGAGTTGATTTTTGAAACATAAATTGAAATTACCTCAACGTGTCT
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAACATAAATTGAAATTACCTCAACGTGTCT
95704158 TGAGGC
66 TGAGGC
95704164 TCAACTCACCTCTCGCAATATGAG
1 TCAACTCACCTCTCGCAATATGAG
95704188 CTAATTTTCT
Statistics
Matches: 271, Mismatches: 30, Indels: 22
0.84 0.09 0.07
Matches are distributed among these distances:
67 28 0.10
69 5 0.02
71 112 0.41
72 13 0.05
73 6 0.02
74 107 0.39
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.31
Consensus pattern (71 bp):
TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAACATAAATTGAAATTACCTCAACGTGTCT
TGAGGC
Found at i:95704195 original size:145 final size:146
Alignment explanation
Indices: 95703807--95704286 Score: 589
Period size: 145 Copynumber: 3.2 Consensus size: 146
95703797 ATTAAAAGGT
* **
95703807 TCAACTCACCTCTCGCAATATGAGTTGATTCTTG--ACA-AACA--GAAATTACCTCATTGTGTC
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAACATAA-ATTGAAATTACCTCAACGTGTC
* * *
95703867 TTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT--TTTGTCAACAGAAATTGAAATTAC
65 TTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTAGATTAT-AATAGAAATTGAAATTAC
*
95703930 CTCAGCGTGTCCCGAGGC
129 CTCAGCGTGCCCCGAGGC
*
95703948 TCAACTCACCTCTCGCAATATGAGTTGATCTTTGAAACATAAATTGAAATTACCTCAACGTGTCT
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAACATAAATTGAAATTACCTCAACGTGTCT
*
95704013 TGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTAGATT-TAATAGGAATTGAAATTACCT
66 TGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTAGATTATAATAGAAATTGAAATTACCT
*
95704077 CAGCGTGCCCCGAGGT
131 CAGCGTGCCCCGAGGC
* *
95704093 TCAACTCACTTCTCGCGATATGAGTTGATTTTTGAAACATAAATTGAAATTACCTCAACGTGTCT
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAACATAAATTGAAATTACCTCAACGTGTCT
* * *
95704158 TGAGGCTCAACTCACCTCTCGCAATATGAGCTAATTTTCTTGGAAAACATGAATTAAAAAGTAGA
66 TGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TT-TT-------A-G-ATT-ATAA-TAGA
* *
95704223 AATTGAAAATACCTCAGCGTGCCCTGAGGC
117 AATTGAAATTACCTCAGCGTGCCCCGAGGC
* *
95704253 TCAACTCACTTCTCGCGATATGAGTTGATTTTTG
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTG
95704287 GAAAAAAACA
Statistics
Matches: 298, Mismatches: 19, Indels: 25
0.87 0.06 0.07
Matches are distributed among these distances:
141 32 0.11
143 4 0.01
144 2 0.01
145 182 0.61
146 1 0.00
147 4 0.01
148 2 0.01
155 1 0.00
156 1 0.00
157 3 0.01
159 2 0.01
160 64 0.21
ACGTcount: A:0.30, C:0.22, G:0.17, T:0.31
Consensus pattern (146 bp):
TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAACATAAATTGAAATTACCTCAACGTGTCT
TGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTAGATTATAATAGAAATTGAAATTACCT
CAGCGTGCCCCGAGGC
Found at i:95705141 original size:1 final size:1
Alignment explanation
Indices: 95705137--95705163 Score: 54
Period size: 1 Copynumber: 27.0 Consensus size: 1
95705127 CTGATCCCCC
95705137 TTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTT
95705164 AGATGCCCTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 26 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:95716450 original size:2 final size:2
Alignment explanation
Indices: 95716390--95716431 Score: 59
Period size: 2 Copynumber: 21.0 Consensus size: 2
95716380 TATTACATAA
*
95716390 AT AT AT ACT -T AT AT AT AT AT AT AT AT AC AT AT AT AT AT AT AT
1 AT AT AT A-T AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
95716432 TAAAGATATG
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
1 1 0.03
2 34 0.94
3 1 0.03
ACGTcount: A:0.48, C:0.05, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:95716856 original size:3 final size:3
Alignment explanation
Indices: 95716839--95716900 Score: 108
Period size: 3 Copynumber: 21.0 Consensus size: 3
95716829 GTATATGCAT
*
95716839 ATA ATA AAA AT- ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
95716886 ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA
95716901 TGAAAATACA
Statistics
Matches: 56, Mismatches: 2, Indels: 2
0.93 0.03 0.03
Matches are distributed among these distances:
2 2 0.04
3 54 0.96
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:95717402 original size:14 final size:16
Alignment explanation
Indices: 95717376--95717410 Score: 56
Period size: 15 Copynumber: 2.3 Consensus size: 16
95717366 AAAAAAAGGA
95717376 GAGAAAGGGAGA-GGG
1 GAGAAAGGGAGAGGGG
95717391 GAGAAA-GGAGAGGGG
1 GAGAAAGGGAGAGGGG
95717406 GAGAA
1 GAGAA
95717411 GAGAAGGCTC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 5 0.26
15 14 0.74
ACGTcount: A:0.43, C:0.00, G:0.57, T:0.00
Consensus pattern (16 bp):
GAGAAAGGGAGAGGGG
Found at i:95718536 original size:7 final size:7
Alignment explanation
Indices: 95718515--95718548 Score: 50
Period size: 7 Copynumber: 4.7 Consensus size: 7
95718505 TATTAAATAT
95718515 TATAAAA
1 TATAAAA
*
95718522 TGAAAAAA
1 T-ATAAAA
95718530 TATAAAA
1 TATAAAA
95718537 TATAAAA
1 TATAAAA
95718544 TATAA
1 TATAA
95718549 TTATTACCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
7 18 0.75
8 6 0.25
ACGTcount: A:0.71, C:0.00, G:0.03, T:0.26
Consensus pattern (7 bp):
TATAAAA
Found at i:95718603 original size:9 final size:9
Alignment explanation
Indices: 95718589--95718617 Score: 58
Period size: 9 Copynumber: 3.2 Consensus size: 9
95718579 AAACATTCTT
95718589 TTAAAAATA
1 TTAAAAATA
95718598 TTAAAAATA
1 TTAAAAATA
95718607 TTAAAAATA
1 TTAAAAATA
95718616 TT
1 TT
95718618 TCAAAAAGCT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (9 bp):
TTAAAAATA
Found at i:95723492 original size:35 final size:36
Alignment explanation
Indices: 95723441--95723551 Score: 118
Period size: 35 Copynumber: 3.0 Consensus size: 36
95723431 TTTTCCTCAT
* *
95723441 TGAAATACCATGCCTACATTTTACAACTCGGTATGG
1 TGAAATACCATACCTACATTTTACAACTCAGTATGG
* *
95723477 -GAAATGCCATACCTACATTTCT-TAACTCAGTATGG
1 TGAAATACCATACCTACATTT-TACAACTCAGTATGG
*
95723512 ATTTGATAATACCATACCTACATTTCACAACTCAGTATGG
1 ---TGA-AATACCATACCTACATTTTACAACTCAGTATGG
95723552 ATGATACCAT
Statistics
Matches: 61, Mismatches: 7, Indels: 10
0.78 0.09 0.13
Matches are distributed among these distances:
35 29 0.48
36 1 0.02
39 2 0.03
40 29 0.48
ACGTcount: A:0.32, C:0.23, G:0.14, T:0.32
Consensus pattern (36 bp):
TGAAATACCATACCTACATTTTACAACTCAGTATGG
Found at i:95726117 original size:130 final size:130
Alignment explanation
Indices: 95725832--95726480 Score: 1005
Period size: 130 Copynumber: 5.0 Consensus size: 130
95725822 TTTAGAGAAT
* * *
95725832 CATGAGTGAAATTCTAAAGGAATATTTGATTATTTTGAACAAAC-AGAAAATCGCAACCCAGCAC
1 CATGAGCGAAATTCTAAAGGAATATTCGATTGTTTTGAACAAACGAG-AAATCGCAACCCAGCAC
* * ** ** *
95725896 GATAAGGCACGATTCCCCGAATTGCCAAATATC-GAGTATTACCTTCGTTTCGAAGAGTTTTTAA
65 GATAGGGCACGATT-CCCGAATTGCCAAACATCGGA-TATCGCCTTCGTTTTAAAGAATTTTTAA
95725960 AGA
128 AGA
* * * * * *
95725963 TATGAGTGAAATTCCAAAGCAATATTCGATTGTTTTGAACAAACGGGAAATCGTAACCCAGCACG
1 CATGAGCGAAATTCTAAAGGAATATTCGATTGTTTTGAACAAACGAGAAATCGCAACCCAGCACG
* * * *
95726028 ATAGGGCACAATTCCCGAATTGACAAACATCGGGTATTGCCTTCGTTTTAAAGAATTTTTAAAGA
66 ATAGGGCACGATTCCCGAATTGCCAAACATCGGATATCGCCTTCGTTTTAAAGAATTTTTAAAGA
* *
95726093 CATGAGCGAAATTCTAAAGGAATATTCGATTGCTTTGAACAAACGAGAAATCGCAACCCAGCACA
1 CATGAGCGAAATTCTAAAGGAATATTCGATTGTTTTGAACAAACGAGAAATCGCAACCCAGCACG
*
95726158 ATAGGGCACGATTCCCGAATTGCCAAACATCGGATATCGCCTTCATTTTAAAGAATTTTTAAAGA
66 ATAGGGCACGATTCCCGAATTGCCAAACATCGGATATCGCCTTCGTTTTAAAGAATTTTTAAAGA
*
95726223 CATGAGCAAAATTCTAAAGGAATATTCGATTGTTTTGAACAAACGAGAAATCGCAACCCAGCACG
1 CATGAGCGAAATTCTAAAGGAATATTCGATTGTTTTGAACAAACGAGAAATCGCAACCCAGCACG
95726288 ATAGGGCACGATTCCCGAATTGCCAAACATCGGATATCGCCTTCGTTTTAAAGAATTTTTAAAGA
66 ATAGGGCACGATTCCCGAATTGCCAAACATCGGATATCGCCTTCGTTTTAAAGAATTTTTAAAGA
*
95726353 CATGAGCGAAATTCCAAAGGAATATTCGATTGTTTTGAACAAACGAGAAATCGCAACCCAGCACG
1 CATGAGCGAAATTCTAAAGGAATATTCGATTGTTTTGAACAAACGAGAAATCGCAACCCAGCACG
* * *
95726418 ATAAGGCACGATTCCCGAATTGCCAAACATCGAATATCGCCTTTGTTTTAAAGAATTTTTAAA
66 ATAGGGCACGATTCCCGAATTGCCAAACATCGGATATCGCCTTCGTTTTAAAGAATTTTTAAA
95726481 TGAATAGGTA
Statistics
Matches: 478, Mismatches: 38, Indels: 5
0.92 0.07 0.01
Matches are distributed among these distances:
130 409 0.86
131 68 0.14
132 1 0.00
ACGTcount: A:0.36, C:0.19, G:0.18, T:0.26
Consensus pattern (130 bp):
CATGAGCGAAATTCTAAAGGAATATTCGATTGTTTTGAACAAACGAGAAATCGCAACCCAGCACG
ATAGGGCACGATTCCCGAATTGCCAAACATCGGATATCGCCTTCGTTTTAAAGAATTTTTAAAGA
Found at i:95726468 original size:390 final size:390
Alignment explanation
Indices: 95725744--95726480 Score: 1056
Period size: 390 Copynumber: 1.9 Consensus size: 390
95725734 TATTTAGTCC
* * * * * *
95725744 AACGAGAAAATCGAAACCCAGCACAGTAGGGCATGACTCCTCGAATTTCCAGATATCGGACATTG
1 AACGAGAAAATCGAAACCCAGCACAATAGGGCACGACTCCTCGAATTGCCAAACATCGGACATCG
* * ** *
95725809 CCTTATTTTTGAATTTAGAGAATCATGAGTGAAATTCTAAAGGAATATTTGATTATTTTGAACAA
66 CCTTATTTTAGAATTTAAAGAATCATGAGCAAAATTCTAAAGGAATATTCGATTATTTTGAACAA
* *
95725874 ACAGAAAATCGCAACCCAGCACGATAAGGCACGATTCCCCGAATTGCCAAATATCGAGTATTACC
131 ACAGAAAATCGCAACCCAGCACGATAAGGCACGATTCCCCGAATTGCCAAACATCGAGTATCACC
* * * *
95725939 TTCGTTTCGAAGAGTTTTTAAAGATATGAGTGAAATTCCAAAGCAATATTCGATTGTTTTGAACA
196 TTCGTTTCAAAGAATTTTTAAAGACATGAGCGAAATTCCAAAGCAATATTCGATTGTTTTGAACA
* * * ** *
95726004 AACGGGAAATCGTAACCCAGCACGATAGGGCACAATTCCCGAATTGACAAACATCGGGTATTGCC
261 AACGAGAAATCGCAACCCAGCACGATAAGGCACAATTCCCGAATTGACAAACATCGAATATCGCC
95726069 TTCGTTTTAAAGAATTTTTAAAGACATGAGCGAAATTCTAAAGGAATATTCGATTGCTTTGAACA
326 TTCGTTTTAAAGAATTTTTAAAGACATGAGCGAAATTCTAAAGGAATATTCGATTGCTTTGAACA
* * *
95726134 AACGAG-AAATCGCAACCCAGCACAATAGGGCACGATTCC-CGAATTGCCAAACATCGGATATCG
1 AACGAGAAAATCGAAACCCAGCACAATAGGGCACGACTCCTCGAATTGCCAAACATCGGACATCG
*
95726197 CCTTCATTTTAAAGAATTTTTAAAG-A-CATGAGCAAAATTCTAAAGGAATATTCGATTGTTTTG
66 CCTT-ATTTT--AGAA--TTTAAAGAATCATGAGCAAAATTCTAAAGGAATATTCGATTATTTTG
*
95726260 AACAAAC-GAGAAATCGCAACCCAGCACGATAGGGCACGATT-CCCGAATTGCCAAACATCG-GA
126 AACAAACAGA-AAATCGCAACCCAGCACGATAAGGCACGATTCCCCGAATTGCCAAACATCGAG-
* * *
95726322 TATCGCCTTCGTTTTAAAGAATTTTTAAAGACATGAGCGAAATTCCAAAGGAATATTCGATTGTT
189 TATCACCTTCGTTTCAAAGAATTTTTAAAGACATGAGCGAAATTCCAAAGCAATATTCGATTGTT
* *
95726387 TTGAACAAACGAGAAATCGCAACCCAGCACGATAAGGCACGATTCCCGAATTGCCAAACATCGAA
254 TTGAACAAACGAGAAATCGCAACCCAGCACGATAAGGCACAATTCCCGAATTGACAAACATCGAA
*
95726452 TATCGCCTTTGTTTTAAAGAATTTTTAAA
319 TATCGCCTTCGTTTTAAAGAATTTTTAAA
95726481 TGAATAGGTA
Statistics
Matches: 306, Mismatches: 34, Indels: 14
0.86 0.10 0.04
Matches are distributed among these distances:
388 23 0.08
389 35 0.11
390 168 0.55
391 73 0.24
392 1 0.00
393 6 0.02
ACGTcount: A:0.36, C:0.20, G:0.18, T:0.26
Consensus pattern (390 bp):
AACGAGAAAATCGAAACCCAGCACAATAGGGCACGACTCCTCGAATTGCCAAACATCGGACATCG
CCTTATTTTAGAATTTAAAGAATCATGAGCAAAATTCTAAAGGAATATTCGATTATTTTGAACAA
ACAGAAAATCGCAACCCAGCACGATAAGGCACGATTCCCCGAATTGCCAAACATCGAGTATCACC
TTCGTTTCAAAGAATTTTTAAAGACATGAGCGAAATTCCAAAGCAATATTCGATTGTTTTGAACA
AACGAGAAATCGCAACCCAGCACGATAAGGCACAATTCCCGAATTGACAAACATCGAATATCGCC
TTCGTTTTAAAGAATTTTTAAAGACATGAGCGAAATTCTAAAGGAATATTCGATTGCTTTGAACA
Found at i:95726793 original size:31 final size:31
Alignment explanation
Indices: 95726750--95726810 Score: 113
Period size: 31 Copynumber: 2.0 Consensus size: 31
95726740 TTCAATACAG
*
95726750 CCAACACAATACACATAATACATAGCATGAA
1 CCAAAACAATACACATAATACATAGCATGAA
95726781 CCAAAACAATACACATAATACATAGCATGA
1 CCAAAACAATACACATAATACATAGCATGA
95726811 TATAAAATGG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.52, C:0.25, G:0.07, T:0.16
Consensus pattern (31 bp):
CCAAAACAATACACATAATACATAGCATGAA
Found at i:95727241 original size:2 final size:2
Alignment explanation
Indices: 95727234--95727263 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
95727224 AGAACGTGCT
*
95727234 TA TA TA TA TA TA TA TA TA TA TA TA CA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
95727264 AAGAAAACTA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
TA
Found at i:95727713 original size:29 final size:28
Alignment explanation
Indices: 95727652--95727713 Score: 72
Period size: 28 Copynumber: 2.2 Consensus size: 28
95727642 CTAAAAAACC
* *
95727652 TAATTGAAATCACATAAAGAAAAGGGCC
1 TAATTGAAATCACATAAAGAAAAAGGCA
*
95727680 TAATTGAAATCACATTAAAATAAAAAGG-A
1 TAATTGAAATCACA-T-AAAGAAAAAGGCA
95727709 TAATT
1 TAATT
95727714 TACAAAGAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
28 14 0.48
29 6 0.21
30 9 0.31
ACGTcount: A:0.53, C:0.10, G:0.13, T:0.24
Consensus pattern (28 bp):
TAATTGAAATCACATAAAGAAAAAGGCA
Found at i:95729420 original size:45 final size:45
Alignment explanation
Indices: 95729332--95729542 Score: 119
Period size: 45 Copynumber: 4.7 Consensus size: 45
95729322 GGTGGCTTAA
* **
95729332 ATCTGCTTCACTGCAACTTCAGGAAGACAAGATTCACCGTCTTCG
1 ATCTGCTCCACTGCAACTTCAGGAAGACAAGATTCACAATCTTCG
*
95729377 ATCTGCTCCATTGCAACTTCAGGGAA-ACAAGA-TCTACAATCTTC-
1 ATCTGCTCCACTGCAACTTCA-GGAAGACAAGATTC-ACAATCTTCG
* * * * * * **** **
95729421 AGCCTACTCCACTACAACTTTAGGGAG-CTAGGATT--GTGGCTTAA
1 A-TCTGCTCCACTGCAACTTCAGGAAGAC-AAGATTCACAATCTTCG
* * * * * * *
95729465 ATCTACTTCACTGCAGCTTCAGGAAGACTAGATTCGCTATCTTCA
1 ATCTGCTCCACTGCAACTTCAGGAAGACAAGATTCACAATCTTCG
* *
95729510 ATCTGCTCCGCTGCAACTTCAGGGAGACAAGAT
1 ATCTGCTCCACTGCAACTTCAGGAAGACAAGAT
95729543 CTGTAGAATT
Statistics
Matches: 122, Mismatches: 34, Indels: 20
0.69 0.19 0.11
Matches are distributed among these distances:
43 26 0.21
44 9 0.07
45 82 0.67
46 5 0.04
ACGTcount: A:0.28, C:0.27, G:0.18, T:0.27
Consensus pattern (45 bp):
ATCTGCTCCACTGCAACTTCAGGAAGACAAGATTCACAATCTTCG
Found at i:95729477 original size:133 final size:133
Alignment explanation
Indices: 95729156--95729544 Score: 555
Period size: 133 Copynumber: 2.9 Consensus size: 133
95729146 GCAATTTTTT
* *
95729156 AGCCTACTCTACTACAACTTTAGAGAGATAGGATGGTGGCTTAAATCTGCTTCACTGCAACTTCA
1 AGCCTACTCCACTACAACTTTAGGGAGATAGGATGGTGGCTTAAATCTGCTTCACTGCAACTTCA
* * * * * * * **
95729221 AGAATAAAAGATTCACCGTTTTTGATCTACTCCACTACAGGTTCAGGG-AACAAGATCTACAATC
66 GGAAGACAAGATTCACCGTCTTCGATCTGCTCCACTGCAACTTCAGGGAAACAAGATCTACAATC
95729285 TTC
131 TTC
*
95729288 AGCCTACTCCATTACAACTTTAGGGAGATAGGATGGTGGCTTAAATCTGCTTCACTGCAACTTCA
1 AGCCTACTCCACTACAACTTTAGGGAGATAGGATGGTGGCTTAAATCTGCTTCACTGCAACTTCA
*
95729353 GGAAGACAAGATTCACCGTCTTCGATCTGCTCCATTGCAACTTCAGGGAAACAAGATCTACAATC
66 GGAAGACAAGATTCACCGTCTTCGATCTGCTCCACTGCAACTTCAGGGAAACAAGATCTACAATC
95729418 TTC
131 TTC
* * * *
95729421 AGCCTACTCCACTACAACTTTAGGGAGCTAGGATTGTGGCTTAAATCTACTTCACTGCAGCTTCA
1 AGCCTACTCCACTACAACTTTAGGGAGATAGGATGGTGGCTTAAATCTGCTTCACTGCAACTTCA
* * ** * * *
95729486 GGAAGACTAGATTCGCTATCTTCAATCTGCTCCGCTGCAACTTCAGGGAGACAAGATCT
66 GGAAGACAAGATTCACCGTCTTCGATCTGCTCCACTGCAACTTCAGGGAAACAAGATCT
95729545 GTAGAATTGG
Statistics
Matches: 230, Mismatches: 26, Indels: 1
0.89 0.10 0.00
Matches are distributed among these distances:
132 100 0.43
133 130 0.57
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.28
Consensus pattern (133 bp):
AGCCTACTCCACTACAACTTTAGGGAGATAGGATGGTGGCTTAAATCTGCTTCACTGCAACTTCA
GGAAGACAAGATTCACCGTCTTCGATCTGCTCCACTGCAACTTCAGGGAAACAAGATCTACAATC
TTC
Found at i:95729673 original size:64 final size:64
Alignment explanation
Indices: 95729567--95729756 Score: 274
Period size: 64 Copynumber: 3.0 Consensus size: 64
95729557 TCATAGGCCT
* * * * *
95729567 ATGCGTATGTCAAATAATTAGGATGCTATGATTGAAATGAATCAACTG-TTCCTAAGTAGATGTG
1 ATGCTTATGTCAAATAATTAGAATGCTATGATCGAAATGAATCAACTGCTT-CTAACTAAATGTG
*
95729631 ATGCTTATGTCAAATAATTAGAATGCTATGATCGAAATGAATCAAGTGCTTCTAACTAAATGTG
1 ATGCTTATGTCAAATAATTAGAATGCTATGATCGAAATGAATCAACTGCTTCTAACTAAATGTG
* * * *
95729695 GTGCTTATGTCAAATAATTAAAATGCTACGATCGAAATGAATCAAGTGCTTCTAACTAAATG
1 ATGCTTATGTCAAATAATTAGAATGCTATGATCGAAATGAATCAACTGCTTCTAACTAAATG
95729757 AATGATCATG
Statistics
Matches: 116, Mismatches: 9, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
64 114 0.98
65 2 0.02
ACGTcount: A:0.37, C:0.13, G:0.18, T:0.32
Consensus pattern (64 bp):
ATGCTTATGTCAAATAATTAGAATGCTATGATCGAAATGAATCAACTGCTTCTAACTAAATGTG
Found at i:95737784 original size:19 final size:20
Alignment explanation
Indices: 95737749--95737786 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
95737739 TGGCCTTTAA
95737749 TGCATAATGATGTAATGCAG
1 TGCATAATGATGTAATGCAG
95737769 TGCA-AATGCATG-AATGCA
1 TGCATAATG-ATGTAATGCA
95737787 AAGGAGGCAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 10 0.59
20 7 0.41
ACGTcount: A:0.37, C:0.13, G:0.24, T:0.26
Consensus pattern (20 bp):
TGCATAATGATGTAATGCAG
Found at i:95740784 original size:130 final size:130
Alignment explanation
Indices: 95740495--95741013 Score: 788
Period size: 130 Copynumber: 4.0 Consensus size: 130
95740485 TTTAGAGAAT
*
95740495 CATGAGTGAAATTCTAAAGGAATATTCGATTATTTTGAACAAAC-AGAAAATCACAACCCAACAC
1 CATGAGTGAAATTCTAAAGGAATATTCGATTGTTTTGAACAAACGAG-AAATCACAACCCAACAC
** *
95740559 GATAGGGCACGATTCCCCGAATTGCCAAACATCGAGTATTACCTTCGTTTCAAAGAATTTTTAAA
65 GATAGGGCACGATT-CCCGAATTGCCAAACATCGAGTATCGCCTTCGTTTTAAAGAATTTTTAAA
95740624 GA
129 GA
* * * * *
95740626 TATGAGTGAAATTCTAAAGGAATCTTCGATTGTTTTGAACAAACGGGAAATCGCAACCCAGCACG
1 CATGAGTGAAATTCTAAAGGAATATTCGATTGTTTTGAACAAACGAGAAATCACAACCCAACACG
* * * *
95740691 ATAGGGCACGATTCCCGAATTGACAAACATCGGGTATTGCCTTCGTTTTAAAGAAATTTTAAAGA
66 ATAGGGCACGATTCCCGAATTGCCAAACATCGAGTATCGCCTTCGTTTTAAAGAATTTTTAAAGA
95740756 CATGAGTGAAATTCTAAAGGAATATTCGATTGTTTTGAACAAACGAGAAATCACAACCCAACACG
1 CATGAGTGAAATTCTAAAGGAATATTCGATTGTTTTGAACAAACGAGAAATCACAACCCAACACG
* * * *
95740821 ATAGGGCACGATTCTCAAATTGTCAAACATCGGGTATCGCCTTCGTTTTAAAGAATTTTTAAAGA
66 ATAGGGCACGATTCCCGAATTGCCAAACATCGAGTATCGCCTTCGTTTTAAAGAATTTTTAAAGA
* ** * *
95740886 CATGAGCGAAATTCTAAAGGAATATTCGATTGTTTTGAACAAACGAGAAATTGCAACCTATCACG
1 CATGAGTGAAATTCTAAAGGAATATTCGATTGTTTTGAACAAACGAGAAATCACAACCCAACACG
* * *
95740951 ATAGGGCACGATTCTCGAATTGCCAAACATCGAATATCGCCTTTGTTTTAAAGAATTTTTAAA
66 ATAGGGCACGATTCCCGAATTGCCAAACATCGAGTATCGCCTTCGTTTTAAAGAATTTTTAAA
95741014 TGAATAGGTA
Statistics
Matches: 356, Mismatches: 31, Indels: 3
0.91 0.08 0.01
Matches are distributed among these distances:
130 285 0.80
131 70 0.20
132 1 0.00
ACGTcount: A:0.37, C:0.18, G:0.18, T:0.28
Consensus pattern (130 bp):
CATGAGTGAAATTCTAAAGGAATATTCGATTGTTTTGAACAAACGAGAAATCACAACCCAACACG
ATAGGGCACGATTCCCGAATTGCCAAACATCGAGTATCGCCTTCGTTTTAAAGAATTTTTAAAGA
Found at i:95742211 original size:29 final size:28
Alignment explanation
Indices: 95742150--95742211 Score: 72
Period size: 28 Copynumber: 2.2 Consensus size: 28
95742140 CTAAAAAACC
* *
95742150 TAATTGAAATCACATAAAGAAAAGGGCC
1 TAATTGAAATCACATAAAGAAAAAGGCA
*
95742178 TAATTGAAATCACATTAAAATAAAAAGG-A
1 TAATTGAAATCACA-T-AAAGAAAAAGGCA
95742207 TAATT
1 TAATT
95742212 TACAAAGAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
28 14 0.48
29 6 0.21
30 9 0.31
ACGTcount: A:0.53, C:0.10, G:0.13, T:0.24
Consensus pattern (28 bp):
TAATTGAAATCACATAAAGAAAAAGGCA
Found at i:95743364 original size:13 final size:13
Alignment explanation
Indices: 95743348--95743372 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
95743338 TAATAGACTG
95743348 TTATAATATTTTA
1 TTATAATATTTTA
95743361 TTATAATATTTT
1 TTATAATATTTT
95743373 TTTTGGTTTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (13 bp):
TTATAATATTTTA
Found at i:95744280 original size:9 final size:10
Alignment explanation
Indices: 95744254--95744323 Score: 80
Period size: 9 Copynumber: 7.6 Consensus size: 10
95744244 TTCATCAATG
*
95744254 GAAACTTTTA
1 GAAATTTTTA
95744264 GAAA-TTTTA
1 GAAATTTTTA
95744273 -AAATTTTTA
1 GAAATTTTTA
95744282 GAAA-TTTTA
1 GAAATTTTTA
95744291 -AAATTTTTA
1 GAAATTTTTA
95744300 GAAA-TTTTA
1 GAAATTTTTA
95744309 -AAATTTTTA
1 GAAATTTTTA
*
95744318 CAAATT
1 GAAATT
95744324 GGTATATGGG
Statistics
Matches: 54, Mismatches: 0, Indels: 12
0.82 0.00 0.18
Matches are distributed among these distances:
8 9 0.17
9 30 0.56
10 15 0.28
ACGTcount: A:0.44, C:0.03, G:0.06, T:0.47
Consensus pattern (10 bp):
GAAATTTTTA
Found at i:95744282 original size:18 final size:18
Alignment explanation
Indices: 95744259--95744323 Score: 121
Period size: 18 Copynumber: 3.6 Consensus size: 18
95744249 CAATGGAAAC
95744259 TTTTAGAAATTTTAAAAT
1 TTTTAGAAATTTTAAAAT
95744277 TTTTAGAAATTTTAAAAT
1 TTTTAGAAATTTTAAAAT
95744295 TTTTAGAAATTTTAAAAT
1 TTTTAGAAATTTTAAAAT
*
95744313 TTTTACAAATT
1 TTTTAGAAATT
95744324 GGTATATGGG
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
18 46 1.00
ACGTcount: A:0.43, C:0.02, G:0.05, T:0.51
Consensus pattern (18 bp):
TTTTAGAAATTTTAAAAT
Found at i:95751598 original size:27 final size:26
Alignment explanation
Indices: 95751566--95751646 Score: 83
Period size: 27 Copynumber: 2.9 Consensus size: 26
95751556 CACGGCTTCA
95751566 CACACAGCCTATCACATGGTCGTGTGT-
1 CACACAGCCTATCACA--GTCGTGTGTC
95751593 CACACATGGCCTATCACAGTCGTGTGTC
1 CACACA--GCCTATCACAGTCGTGTGTC
*
95751621 GCACACAGCCTGTCACACCGTCGTGT
1 -CACACAGCCTATCACA--GTCGTGT
95751647 ATCGCACATG
Statistics
Matches: 47, Mismatches: 1, Indels: 10
0.81 0.02 0.17
Matches are distributed among these distances:
27 24 0.51
29 23 0.49
ACGTcount: A:0.21, C:0.33, G:0.22, T:0.23
Consensus pattern (26 bp):
CACACAGCCTATCACAGTCGTGTGTC
Found at i:95751651 original size:29 final size:27
Alignment explanation
Indices: 95751566--95751654 Score: 97
Period size: 29 Copynumber: 3.1 Consensus size: 27
95751556 CACGGCTTCA
*
95751566 CACACAGCCTATCACATGGTCGTGTGTCA
1 CACACAGCCTATCACA--GTCGTGTGTCG
**
95751595 CACATGGCCTATCACAGTCGTGTGTCG
1 CACACAGCCTATCACAGTCGTGTGTCG
* *
95751622 CACACAGCCTGTCACACCGTCGTGTATCG
1 CACACAGCCTATCACA--GTCGTGTGTCG
95751651 CACA
1 CACA
95751655 TGGCCTGGCA
Statistics
Matches: 51, Mismatches: 7, Indels: 4
0.82 0.11 0.06
Matches are distributed among these distances:
27 23 0.45
29 28 0.55
ACGTcount: A:0.22, C:0.34, G:0.21, T:0.22
Consensus pattern (27 bp):
CACACAGCCTATCACAGTCGTGTGTCG
Found at i:95751660 original size:29 final size:28
Alignment explanation
Indices: 95751584--95751668 Score: 91
Period size: 27 Copynumber: 3.0 Consensus size: 28
95751574 CTATCACATG
* * *
95751584 GTCGTGTGTCACACATGGCCTATCACA-
1 GTCGTGTATCGCACATGGCCTGTCACAC
* **
95751611 GTCGTGTGTCGCACACAGCCTGTCACACC
1 GTCGTGTATCGCACATGGCCTGTCACA-C
*
95751640 GTCGTGTATCGCACATGGCCTGGCACAC
1 GTCGTGTATCGCACATGGCCTGTCACAC
95751668 G
1 G
95751669 GCCGTGTAGT
Statistics
Matches: 48, Mismatches: 8, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
27 23 0.48
28 2 0.04
29 23 0.48
ACGTcount: A:0.19, C:0.33, G:0.26, T:0.22
Consensus pattern (28 bp):
GTCGTGTATCGCACATGGCCTGTCACAC
Found at i:95751674 original size:29 final size:29
Alignment explanation
Indices: 95751613--95751676 Score: 74
Period size: 29 Copynumber: 2.2 Consensus size: 29
95751603 CTATCACAGT
* * *
95751613 CGTGTGTCGCACACAGCCTGTCACACCGT
1 CGTGTATCGCACACAGCCTGGCACACCGC
** *
95751642 CGTGTATCGCACATGGCCTGGCACACGGC
1 CGTGTATCGCACACAGCCTGGCACACCGC
95751671 CGTGTA
1 CGTGTA
95751677 GTGTCGATAG
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.17, C:0.34, G:0.28, T:0.20
Consensus pattern (29 bp):
CGTGTATCGCACACAGCCTGGCACACCGC
Found at i:95752679 original size:51 final size:51
Alignment explanation
Indices: 95752615--95752730 Score: 133
Period size: 51 Copynumber: 2.3 Consensus size: 51
95752605 ATGGAAACAT
** * * *
95752615 GATATGATATTATAATCTTAGAGATCTTAGATATGATATGGAATCTTATAA
1 GATATGATATTATAAGATTACAGATCTTAGATAAGATATGGAATCTTAGAA
* * * ** *
95752666 GATATTATTTTATAAGATTACATATCTTATCTAAGATATGTAATCTTAGAA
1 GATATGATATTATAAGATTACAGATCTTAGATAAGATATGGAATCTTAGAA
95752717 GATATGATATTATA
1 GATATGATATTATA
95752731 TTTGGTAGTA
Statistics
Matches: 52, Mismatches: 13, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
51 52 1.00
ACGTcount: A:0.40, C:0.06, G:0.13, T:0.41
Consensus pattern (51 bp):
GATATGATATTATAAGATTACAGATCTTAGATAAGATATGGAATCTTAGAA
Found at i:95755474 original size:51 final size:51
Alignment explanation
Indices: 95755410--95755525 Score: 133
Period size: 51 Copynumber: 2.3 Consensus size: 51
95755400 ATGGAAACAT
** * * *
95755410 GATATGATATTATAATCTTAGAGATCTTAGATATGATATGGAATCTTATAA
1 GATATGATATTATAAGATTACAGATCTTAGATAAGATATGGAATCTTAGAA
* * * ** *
95755461 GATATTATTTTATAAGATTACATATCTTATCTAAGATATGTAATCTTAGAA
1 GATATGATATTATAAGATTACAGATCTTAGATAAGATATGGAATCTTAGAA
95755512 GATATGATATTATA
1 GATATGATATTATA
95755526 TTTGGTAGTA
Statistics
Matches: 52, Mismatches: 13, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
51 52 1.00
ACGTcount: A:0.40, C:0.06, G:0.13, T:0.41
Consensus pattern (51 bp):
GATATGATATTATAAGATTACAGATCTTAGATAAGATATGGAATCTTAGAA
Found at i:95757214 original size:15 final size:15
Alignment explanation
Indices: 95757190--95757220 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
95757180 ATAATAGTTT
*
95757190 AAATATAAAATAAAA
1 AAATAAAAAATAAAA
95757205 AAATAAAAAATAAAA
1 AAATAAAAAATAAAA
95757220 A
1 A
95757221 GGAAATGAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (15 bp):
AAATAAAAAATAAAA
Found at i:95759242 original size:138 final size:139
Alignment explanation
Indices: 95759071--95759376 Score: 368
Period size: 141 Copynumber: 2.2 Consensus size: 139
95759061 TTTGATTTGC
* * * *
95759071 TCCACTGCAACTTCAAGGAGATAAGATATGCTATCTTCAGTCTGCTCCACTGTAACTTT-AGGGA
1 TCCACTGTAACTTCAGGGAGATAAGATACGCTATCTTCAGTCTGCTCCACTGTAA-TTTCAAGGA
* * * * * * *** *
95759135 GATAAG-GTTTGCTAT-GATTTGCTTTACTGCAACATCAGAAAGATAAGATTTATTTATTTATTG
65 GATAAGAGGTGGCT-TCAATCTGCTTCACTGCAACATCAGAAAGATAAGATCTATTTAAACATAG
* *
95759198 TTTCGATCTGT
129 CTTCGATCTAT
*
95759209 TCCACTGTAACTTCAGGGAAATAAGACT-CGCTATCTTCAGTCTGCTCCACTGTAATTTCAAGGA
1 TCCACTGTAACTTCAGGGAGATAAGA-TACGCTATCTTCAGTCTGCTCCACTGTAATTTCAAGGA
* *
95759273 GATAAGACTGGTGGCTTCAATCTGCTTCACTGCAACTTCAGGAAGATAAGATCTATTTAAACATA
65 GATAAGA--GGTGGCTTCAATCTGCTTCACTGCAACATCAGAAAGATAAGATCTATTTAAACATA
95759338 GCTTCGATCTAT
128 GCTTCGATCTAT
95759350 TCCACTGTAACTTCAGGGAGATAAGAT
1 TCCACTGTAACTTCAGGGAGATAAGAT
95759377 CTGTTTATTT
Statistics
Matches: 142, Mismatches: 20, Indels: 10
0.83 0.12 0.06
Matches are distributed among these distances:
137 3 0.02
138 59 0.42
139 1 0.01
140 2 0.01
141 77 0.54
ACGTcount: A:0.29, C:0.19, G:0.18, T:0.33
Consensus pattern (139 bp):
TCCACTGTAACTTCAGGGAGATAAGATACGCTATCTTCAGTCTGCTCCACTGTAATTTCAAGGAG
ATAAGAGGTGGCTTCAATCTGCTTCACTGCAACATCAGAAAGATAAGATCTATTTAAACATAGCT
TCGATCTAT
Found at i:95759320 original size:44 final size:45
Alignment explanation
Indices: 95759203--95759323 Score: 124
Period size: 44 Copynumber: 2.7 Consensus size: 45
95759193 TATTGTTTCG
*
95759203 ATCTG-TTCCACTGTAACTTCAGGGAA-ATAAGACTCGCTATCTTCA
1 ATCTGCTT-CACTGTAACTTCA-GGAAGATAAGACTCGCTAGCTTCA
* * * * *
95759248 GTCTGCTCCACTGTAATTTCAAGG-AGATAAGACT-GGTGGCTTCA
1 ATCTGCTTCACTGTAACTTC-AGGAAGATAAGACTCGCTAGCTTCA
*
95759292 ATCTGCTTCACTGCAACTTCAGGAAGATAAGA
1 ATCTGCTTCACTGTAACTTCAGGAAGATAAGA
95759324 TCTATTTAAA
Statistics
Matches: 62, Mismatches: 10, Indels: 9
0.77 0.12 0.11
Matches are distributed among these distances:
43 3 0.05
44 32 0.52
45 25 0.40
46 2 0.03
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29
Consensus pattern (45 bp):
ATCTGCTTCACTGTAACTTCAGGAAGATAAGACTCGCTAGCTTCA
Found at i:95759431 original size:52 final size:52
Alignment explanation
Indices: 95759300--95759431 Score: 167
Period size: 52 Copynumber: 2.5 Consensus size: 52
95759290 CAATCTGCTT
* *
95759300 CACTGCAACTTC-AGGAAGATAAGATCTATTTAAACATAGCTTCGATCTATTC
1 CACTGTAACTTCAAGG-AGATAAGATCTGTTTAAACATAGCTTCGATCTATTC
* *** * *
95759352 CACTGTAACTTCAGGGAGATAAGATCTGTTTATTTATAGTTTCGATCTGTTC
1 CACTGTAACTTCAAGGAGATAAGATCTGTTTAAACATAGCTTCGATCTATTC
*
95759404 CACTGTAACTTTAAGGAGATAAGATCTG
1 CACTGTAACTTCAAGGAGATAAGATCTG
95759432 CTATCTTCAG
Statistics
Matches: 69, Mismatches: 10, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
52 67 0.97
53 2 0.03
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.34
Consensus pattern (52 bp):
CACTGTAACTTCAAGGAGATAAGATCTGTTTAAACATAGCTTCGATCTATTC
Found at i:95761059 original size:19 final size:19
Alignment explanation
Indices: 95761025--95761063 Score: 53
Period size: 20 Copynumber: 2.1 Consensus size: 19
95761015 GATTTCGTAC
*
95761025 TTTGGCCCATTTTCTCCGTT
1 TTTGGCCCAGTTTCT-CGTT
95761045 TTTGGCCC-GTTTCTCGTT
1 TTTGGCCCAGTTTCTCGTT
95761063 T
1 T
95761064 CTTTCGCTCT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 5 0.28
19 5 0.28
20 8 0.44
ACGTcount: A:0.03, C:0.28, G:0.18, T:0.51
Consensus pattern (19 bp):
TTTGGCCCAGTTTCTCGTT
Found at i:95765525 original size:48 final size:49
Alignment explanation
Indices: 95765455--95765551 Score: 178
Period size: 48 Copynumber: 2.0 Consensus size: 49
95765445 ACATGGGGTA
*
95765455 AAAATATGTATAATTTATGGTTTATCAAATACCC-CACACTTAAGCATT
1 AAAATATGTATAATTTACGGTTTATCAAATACCCGCACACTTAAGCATT
95765503 AAAATATGTATAATTTACGGTTTATCAAATACCCGCACACTTAAGCATT
1 AAAATATGTATAATTTACGGTTTATCAAATACCCGCACACTTAAGCATT
95765552 TGTTTGTCCT
Statistics
Matches: 47, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
48 33 0.70
49 14 0.30
ACGTcount: A:0.39, C:0.18, G:0.09, T:0.34
Consensus pattern (49 bp):
AAAATATGTATAATTTACGGTTTATCAAATACCCGCACACTTAAGCATT
Found at i:95769179 original size:13 final size:13
Alignment explanation
Indices: 95769161--95769185 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
95769151 GCATGTGGGT
95769161 TCACACGGTCGTA
1 TCACACGGTCGTA
95769174 TCACACGGTCGT
1 TCACACGGTCGT
95769186 GTCTAGCTTC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.20, C:0.32, G:0.24, T:0.24
Consensus pattern (13 bp):
TCACACGGTCGTA
Found at i:95769338 original size:55 final size:55
Alignment explanation
Indices: 95769230--95769372 Score: 160
Period size: 55 Copynumber: 2.6 Consensus size: 55
95769220 TGCAAGCCCC
** * * *
95769230 ACGCCCGTGTTAATTTAACAGGTTCGACCACTGTTCTTCCAAACGGGCGTGTCGA
1 ACGCCCGTGTTGTTTTAACAGGTTCGACCACGGTTCTTCCAAACAGGCATGTCGA
* * * * * *
95769285 ATGCCCTTGTTGTTTTAATAGGTTCGCCCACGGTTCTTCCACACAGGCATGTCGT
1 ACGCCCGTGTTGTTTTAACAGGTTCGACCACGGTTCTTCCAAACAGGCATGTCGA
** *
95769340 ACGCCCGTGTTGTTTTGGCAGGCTCGACCACGG
1 ACGCCCGTGTTGTTTTAACAGGTTCGACCACGG
95769373 CCATATCGCA
Statistics
Matches: 70, Mismatches: 18, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
55 70 1.00
ACGTcount: A:0.17, C:0.28, G:0.25, T:0.29
Consensus pattern (55 bp):
ACGCCCGTGTTGTTTTAACAGGTTCGACCACGGTTCTTCCAAACAGGCATGTCGA
Found at i:95771186 original size:36 final size:36
Alignment explanation
Indices: 95771144--95771425 Score: 153
Period size: 36 Copynumber: 7.6 Consensus size: 36
95771134 GAATAATTAT
* *
95771144 TTATTCAGTAACAGTTAGTTATTCGGTAACAATCAA
1 TTATTCAGTAACAGTCAGTTATTCAGTAACAATCAA
* * ** **
95771180 TTATTCAATAATAACCAGTTATTCAGTATTGATCAATTGATCGG
1 TTATTCAGTAACAGTCAGTTATTCAGTA---A-C-A---ATCAA
* *
95771224 TTATCCAGTAACAGTCAATTATTCAGT-A-AATCAGA
1 TTATTCAGTAACAGTCAGTTATTCAGTAACAATCA-A
* * * *
95771259 -TATTCAGTAACTATTAAGTTATTCAGTAGCAGTC-A
1 TTATTCAGTAAC-AGTCAGTTATTCAGTAACAATCAA
* **
95771294 TTCATTCAGTGAC-GATCAGTTATTCAGTAATGATCAA
1 TT-ATTCAGTAACAG-TCAGTTATTCAGTAACAATCAA
* * * *
95771331 TTATTCAGTAATATTCAGTTATTCAGTAATAGTCTAA
1 TTATTCAGTAACAGTCAGTTATTCAGTAACAATC-AA
* * * * *
95771368 -TATCCAGTAACAGTCAATTATCCGGTAACAGTCAA
1 TTATTCAGTAACAGTCAGTTATTCAGTAACAATCAA
* *
95771403 TTATTCAGTAATAATCAGTTATT
1 TTATTCAGTAACAGTCAGTTATT
95771426 TTATACCTTT
Statistics
Matches: 181, Mismatches: 46, Indels: 38
0.68 0.17 0.14
Matches are distributed among these distances:
34 13 0.07
35 15 0.08
36 107 0.59
37 18 0.10
39 1 0.01
40 2 0.01
41 1 0.01
44 24 0.13
ACGTcount: A:0.35, C:0.15, G:0.13, T:0.37
Consensus pattern (36 bp):
TTATTCAGTAACAGTCAGTTATTCAGTAACAATCAA
Found at i:95771250 original size:18 final size:18
Alignment explanation
Indices: 95771224--95771413 Score: 144
Period size: 18 Copynumber: 10.6 Consensus size: 18
95771214 AATTGATCGG
*
95771224 TTATCCAGTAACAGTCAA
1 TTATTCAGTAACAGTCAA
95771242 TTATTCAGTAA-A-TCAGA
1 TTATTCAGTAACAGTCA-A
*
95771259 -TATTCAGTAACTA-TTAA
1 TTATTCAGTAAC-AGTCAA
*
95771276 GTTATTCAGTAGCAGTC-A
1 -TTATTCAGTAACAGTCAA
* *
95771294 TTCATTCAGTGAC-GATCAG
1 TT-ATTCAGTAACAG-TCAA
*
95771313 TTATTCAGTAA-TGATCAA
1 TTATTCAGTAACAG-TCAA
* * *
95771331 TTATTCAGTAATATTCAG
1 TTATTCAGTAACAGTCAA
*
95771349 TTATTCAGTAATAGTCTAA
1 TTATTCAGTAACAGTC-AA
*
95771368 -TATCCAGTAACAGTCAA
1 TTATTCAGTAACAGTCAA
* *
95771385 TTATCCGGTAACAGTCAA
1 TTATTCAGTAACAGTCAA
95771403 TTATTCAGTAA
1 TTATTCAGTAA
95771414 TAATCAGTTA
Statistics
Matches: 140, Mismatches: 19, Indels: 26
0.76 0.10 0.14
Matches are distributed among these distances:
16 13 0.09
17 8 0.06
18 105 0.75
19 14 0.10
ACGTcount: A:0.36, C:0.16, G:0.13, T:0.35
Consensus pattern (18 bp):
TTATTCAGTAACAGTCAA
Found at i:95771403 original size:72 final size:70
Alignment explanation
Indices: 95771225--95771425 Score: 219
Period size: 72 Copynumber: 2.8 Consensus size: 70
95771215 ATTGATCGGT
* *
95771225 TATCCAGTAACAGTCAATTATTCAGTAAA-TCAGA-TATTCAGTAACTATTAAGTTATTCAGTAG
1 TATCCAGTAACAGTCAATTATTCAGTAAAGTCA-ATTATTCAGTAA-TATTCAGTTATTCAGTAA
*
95771288 CAGTCAT
64 CAGTCAA
* * * *
95771295 TCATTCAGTGAC-GATCAGTTATTCAGTAATGATCAATTATTCAGTAATATTCAGTTATTCAGTA
1 T-ATCCAGTAACAG-TCAATTATTCAGTAAAG-TCAATTATTCAGTAATATTCAGTTATTCAGTA
*
95771359 ATAGTCTAA
63 ACAGTC-AA
* * *
95771368 TATCCAGTAACAGTCAATTATCCGGTAACAGTCAATTATTCAGTAATAATCAGTTATT
1 TATCCAGTAACAGTCAATTATTCAGTAA-AGTCAATTATTCAGTAATATTCAGTTATT
95771426 TTATACCTTT
Statistics
Matches: 108, Mismatches: 15, Indels: 14
0.79 0.11 0.10
Matches are distributed among these distances:
70 2 0.02
71 22 0.20
72 67 0.62
73 17 0.16
ACGTcount: A:0.36, C:0.15, G:0.13, T:0.36
Consensus pattern (70 bp):
TATCCAGTAACAGTCAATTATTCAGTAAAGTCAATTATTCAGTAATATTCAGTTATTCAGTAACA
GTCAA
Found at i:95771424 original size:18 final size:18
Alignment explanation
Indices: 95771131--95771425 Score: 114
Period size: 18 Copynumber: 16.1 Consensus size: 18
95771121 TCATTAACAC
* *
95771131 TCAG-AATAATTATTTAT
1 TCAGTAATAATCAGTTAT
* * *
95771148 TCAGTAACAGTTAGTTAT
1 TCAGTAATAATCAGTTAT
* * *
95771166 TCGGTAACAATCAATTAT
1 TCAGTAATAATCAGTTAT
* *
95771184 TCAATAATAACCAGTTAT
1 TCAGTAATAATCAGTTAT
*
95771202 TCAGTATTGATCAATTGATCGGTTAT
1 TCAGTA---AT--A---ATCAGTTAT
* * * *
95771228 CCAGTAACAGTCAATTAT
1 TCAGTAATAATCAGTTAT
*
95771246 TCAGT-A-AATCAGATAT
1 TCAGTAATAATCAGTTAT
* *
95771262 TCAGTAACTATTAAGTTAT
1 TCAGTAA-TAATCAGTTAT
** *
95771281 TCAGTAGCAGTCA-TTCAT
1 TCAGTAATAATCAGTT-AT
* **
95771299 TCAGTGACGATCAGTTAT
1 TCAGTAATAATCAGTTAT
* *
95771317 TCAGTAATGATCAATTAT
1 TCAGTAATAATCAGTTAT
*
95771335 TCAGTAATATTCAGTTAT
1 TCAGTAATAATCAGTTAT
* *
95771353 TCAGTAATAGTCTA-ATAT
1 TCAGTAATAATC-AGTTAT
* * * *
95771371 CCAGTAACAGTCAATTAT
1 TCAGTAATAATCAGTTAT
* * * * *
95771389 CCGGTAACAGTCAATTAT
1 TCAGTAATAATCAGTTAT
95771407 TCAGTAATAATCAGTTAT
1 TCAGTAATAATCAGTTAT
95771425 T
1 T
95771426 TTATACCTTT
Statistics
Matches: 210, Mismatches: 52, Indels: 31
0.72 0.18 0.11
Matches are distributed among these distances:
16 12 0.06
17 9 0.04
18 156 0.74
19 16 0.08
21 3 0.01
23 2 0.01
26 12 0.06
ACGTcount: A:0.36, C:0.15, G:0.13, T:0.37
Consensus pattern (18 bp):
TCAGTAATAATCAGTTAT
Found at i:95772716 original size:27 final size:27
Alignment explanation
Indices: 95772492--95772796 Score: 219
Period size: 27 Copynumber: 11.3 Consensus size: 27
95772482 CAAATTATTG
*
95772492 AAATA-CCCTCGACTTGTAAAATTACCA
1 AAATACCCCT-GATTTGTAAAATTACCA
* ** * *
95772519 AAGTACCCCCAATTTATAAAATTACCC
1 AAATACCCCTGATTTGTAAAATTACCA
* *
95772546 AAATA-TCCTCGATTTGTAAAATGACCA
1 AAATACCCCT-GATTTGTAAAATTACCA
* * **
95772573 AAATACCCTTGGTTTACAAAATTACCA
1 AAATACCCCTGATTTGTAAAATTACCA
***
95772600 AAATA-CCCTCGATCAATAAAATTACCA
1 AAATACCCCT-GATTTGTAAAATTACCA
* *
95772627 AAATACCCCTGGTTTATAAAATTACCA
1 AAATACCCCTGATTTGTAAAATTACCA
* *
95772654 AAATGCCCCTGATTTGTAAAATTAACA
1 AAATACCCCTGATTTGTAAAATTACCA
*
95772681 AAATACCCCTGATTTGTGAAATTA-CA
1 AAATACCCCTGATTTGTAAAATTACCA
** * *
95772707 GAAATACCCCTG-TAGGGTAGAATTACCG
1 -AAATACCCCTGAT-TTGTAAAATTACCA
** *
95772735 AAATACCCCTG-TAGGGTAGAATTACCA
1 AAATACCCCTGAT-TTGTAAAATTACCA
* ** *
95772762 AAATATCCCTG-TAGGGTAAAATTACCG
1 AAATACCCCTGAT-TTGTAAAATTACCA
95772789 AAATACCC
1 AAATACCC
95772797 TTGTGGGGTA
Statistics
Matches: 227, Mismatches: 43, Indels: 16
0.79 0.15 0.06
Matches are distributed among these distances:
26 8 0.04
27 209 0.92
28 10 0.04
ACGTcount: A:0.40, C:0.23, G:0.11, T:0.26
Consensus pattern (27 bp):
AAATACCCCTGATTTGTAAAATTACCA
Found at i:95772718 original size:54 final size:54
Alignment explanation
Indices: 95772492--95772715 Score: 254
Period size: 54 Copynumber: 4.1 Consensus size: 54
95772482 CAAATTATTG
* * ** *
95772492 AAATACCCTCGACTTGTAAAATTACCAAAGTACCCCCAATTTATAAAATTACCC
1 AAATACCCTCGATTTGTAAAATTACCAAAATACCCCTGATTTATAAAATTACCA
* * * * *
95772546 AAATATCCTCGATTTGTAAAATGACCAAAATACCCTTGGTTTACAAAATTACCA
1 AAATACCCTCGATTTGTAAAATTACCAAAATACCCCTGATTTATAAAATTACCA
*** *
95772600 AAATACCCTCGATCAATAAAATTACCAAAATACCCCTGGTTTATAAAATTACCA
1 AAATACCCTCGATTTGTAAAATTACCAAAATACCCCTGATTTATAAAATTACCA
* * * *
95772654 AAATGCCC-CTGATTTGTAAAATTAACAAAATACCCCTGATTTGTGAAATTA-CA
1 AAATACCCTC-GATTTGTAAAATTACCAAAATACCCCTGATTTATAAAATTACCA
95772707 GAAATACCC
1 -AAATACCC
95772716 CTGTAGGGTA
Statistics
Matches: 142, Mismatches: 26, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
53 3 0.02
54 139 0.98
ACGTcount: A:0.42, C:0.23, G:0.08, T:0.27
Consensus pattern (54 bp):
AAATACCCTCGATTTGTAAAATTACCAAAATACCCCTGATTTATAAAATTACCA
Found at i:95772731 original size:81 final size:81
Alignment explanation
Indices: 95772643--95772815 Score: 188
Period size: 81 Copynumber: 2.1 Consensus size: 81
95772633 CCCTGGTTTA
* ** ** *
95772643 TAAAATTACCAAAATGCCCCTG-ATTTGTAAAATTAACAAAATACCCCTG-ATTTGTGAAATTAC
1 TAAAATTACCAAAATACCCCTGTA-GGGTAAAATTAACAAAATACCCCTGTA-GGGTAAAATTAC
95772706 AGAAATACCCCTGTAGGG
64 AGAAATACCCCTGTAGGG
* * * * * *
95772724 TAGAATTACCGAAATACCCCTGTAGGGTAGAATTACCAAAATATCCCTGTAGGGTAAAATTACCG
1 TAAAATTACCAAAATACCCCTGTAGGGTAAAATTAACAAAATACCCCTGTAGGGTAAAATTACAG
* *
95772789 AAATACCCTTGTGGGG
66 AAATACCCCTGTAGGG
95772805 TAAAATTACCA
1 TAAAATTACCA
95772816 TTTTGCCCCT
Statistics
Matches: 74, Mismatches: 16, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
81 72 0.97
82 2 0.03
ACGTcount: A:0.38, C:0.20, G:0.16, T:0.26
Consensus pattern (81 bp):
TAAAATTACCAAAATACCCCTGTAGGGTAAAATTAACAAAATACCCCTGTAGGGTAAAATTACAG
AAATACCCCTGTAGGG
Found at i:95773244 original size:31 final size:31
Alignment explanation
Indices: 95773209--95773287 Score: 104
Period size: 31 Copynumber: 2.5 Consensus size: 31
95773199 TTGCATTCAT
* * *
95773209 ATTCTGATTTTGATTCTGTTACAAGATACTG
1 ATTCTGATTCTGATTCTGTCACAAGATACTA
** *
95773240 ATTCTGATTCTGATTCTGTCACCTGATTCTA
1 ATTCTGATTCTGATTCTGTCACAAGATACTA
95773271 ATTCTGATTCTGATTCT
1 ATTCTGATTCTGATTCT
95773288 AGTTCTGATA
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 42 1.00
ACGTcount: A:0.22, C:0.18, G:0.14, T:0.47
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTGTCACAAGATACTA
Found at i:95773248 original size:6 final size:6
Alignment explanation
Indices: 95773209--95773296 Score: 65
Period size: 6 Copynumber: 14.3 Consensus size: 6
95773199 TTGCATTCAT
* * *
95773209 ATTCTG ATTTTG ATTCTG -TTACAAG ATACTG ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT-C-TG ATTCTG ATTCTG ATTCTG ATTCTG
* *
95773258 -TCACCTG ATTCTA ATTCTG ATTCTG ATTCT- AGTTCTG AT
1 AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG AT
95773297 AATGTTTCTT
Statistics
Matches: 64, Mismatches: 10, Indels: 16
0.71 0.11 0.18
Matches are distributed among these distances:
5 4 0.06
6 52 0.81
7 6 0.09
8 2 0.03
ACGTcount: A:0.22, C:0.17, G:0.15, T:0.47
Consensus pattern (6 bp):
ATTCTG
Found at i:95774317 original size:30 final size:30
Alignment explanation
Indices: 95774281--95774342 Score: 115
Period size: 30 Copynumber: 2.1 Consensus size: 30
95774271 AAGTTCTAGT
95774281 TGAAGTGTGATAGTGATAGTAAGATCAGAG
1 TGAAGTGTGATAGTGATAGTAAGATCAGAG
*
95774311 TGAAGTGTGATAGTGATAGTAGGATCAGAG
1 TGAAGTGTGATAGTGATAGTAAGATCAGAG
95774341 TG
1 TG
95774343 CGCAGCGGTA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.34, C:0.03, G:0.35, T:0.27
Consensus pattern (30 bp):
TGAAGTGTGATAGTGATAGTAAGATCAGAG
Found at i:95775542 original size:30 final size:30
Alignment explanation
Indices: 95775506--95775565 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
95775496 TTCCTGAGCC
95775506 TAGGGGCAAAA-GTGTAATTATGCAAAAGTT
1 TAGGGGCAAAATG-GTAATTATGCAAAAGTT
* *
95775536 TAGGGGCAAAATGGTAATTTTGCCAAAGTT
1 TAGGGGCAAAATGGTAATTATGCAAAAGTT
95775566 CGTATTAAGG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
30 26 0.96
31 1 0.04
ACGTcount: A:0.37, C:0.08, G:0.27, T:0.28
Consensus pattern (30 bp):
TAGGGGCAAAATGGTAATTATGCAAAAGTT
Found at i:95776040 original size:47 final size:45
Alignment explanation
Indices: 95775986--95776158 Score: 192
Period size: 47 Copynumber: 3.8 Consensus size: 45
95775976 TGGTTGAGCA
95775986 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAT-GATGT-GAATG
* *
95776033 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA-GATGT-AACTAG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGATGTGAA-T-G
* * *
95776077 GCATCGAACTCGTTGAGTTGAGT-CGAGTTCACTTATGATGCGAACG
1 TC--CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGATGTGAATG
* * *
95776123 CCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATG
95776159 GGCGGGTTAC
Statistics
Matches: 108, Mismatches: 10, Indels: 18
0.79 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 1 0.01
44 24 0.22
45 21 0.19
46 25 0.23
47 33 0.31
48 2 0.02
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGATGTGAATG
Found at i:95783076 original size:30 final size:30
Alignment explanation
Indices: 95783029--95783088 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
95783019 TTCCCGAGCC
*
95783029 TAGGGGTAAAAGTGTAATTATGCAAAAGTT
1 TAGGGGCAAAAGTGTAATTATGCAAAAGTT
* *
95783059 TAGGGGCAAAA-TGGTAATTTTGCCAAAGTT
1 TAGGGGCAAAAGT-GTAATTATGCAAAAGTT
95783089 CGTATTAAGG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
29 1 0.04
30 25 0.96
ACGTcount: A:0.37, C:0.07, G:0.27, T:0.30
Consensus pattern (30 bp):
TAGGGGCAAAAGTGTAATTATGCAAAAGTT
Found at i:95783579 original size:47 final size:46
Alignment explanation
Indices: 95783510--95783686 Score: 209
Period size: 47 Copynumber: 3.8 Consensus size: 46
95783500 TGGTTGAGCA
*
95783510 TCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGTGGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGT-GAATG
* *
95783557 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGT-AACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAA-T--G
* *
95783602 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATG
* *
95783650 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
95783687 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 9, Indels: 19
0.80 0.06 0.14
Matches are distributed among these distances:
42 2 0.02
43 1 0.01
44 5 0.04
45 1 0.01
46 37 0.33
47 57 0.51
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATG
Found at i:95785604 original size:27 final size:27
Alignment explanation
Indices: 95785571--95785795 Score: 229
Period size: 27 Copynumber: 8.3 Consensus size: 27
95785561 CAAATTATTG
*
95785571 AAATACCCTCGACTTGTAAAATTACCA
1 AAATACCCTCGATTTGTAAAATTACCA
* * * * *
95785598 AAGTACCCCCAATTTATAAAATTACCC
1 AAATACCCTCGATTTGTAAAATTACCA
*
95785625 AAATATCCTCGATTTGTAAAATTACCA
1 AAATACCCTCGATTTGTAAAATTACCA
* * **
95785652 AAATACCCTTGGTTTACAAAATTACCA
1 AAATACCCTCGATTTGTAAAATTACCA
***
95785679 AAATACCCTCGATCAATAAAATTACCA
1 AAATACCCTCGATTTGTAAAATTACCA
*
95785706 AAATACCC-CTGGTTTGTAAAATTACCA
1 AAATACCCTC-GATTTGTAAAATTACCA
* * *
95785733 AAATACCCTTGATTTGTGAAATTATCA
1 AAATACCCTCGATTTGTAAAATTACCA
* * *
95785760 AAATACCC-CTGATTTGTGAAATTATCG
1 AAATACCCTC-GATTTGTAAAATTACCA
95785787 AAATACCCT
1 AAATACCCT
95785796 TGTAGAGTAG
Statistics
Matches: 162, Mismatches: 32, Indels: 7
0.81 0.16 0.03
Matches are distributed among these distances:
26 1 0.01
27 161 0.99
ACGTcount: A:0.40, C:0.23, G:0.08, T:0.29
Consensus pattern (27 bp):
AAATACCCTCGATTTGTAAAATTACCA
Found at i:95785797 original size:54 final size:54
Alignment explanation
Indices: 95785571--95785795 Score: 261
Period size: 54 Copynumber: 4.2 Consensus size: 54
95785561 CAAATTATTG
* * ** *
95785571 AAATACCCTCGACTTGTAAAATTACCAAAGTACCCCCAATTTATAAAATTACCC
1 AAATACCCTCGATTTGTAAAATTACCAAAATACCCCTGATTTATAAAATTACCA
* * * *
95785625 AAATATCCTCGATTTGTAAAATTACCAAAATACCCTTGGTTTACAAAATTACCA
1 AAATACCCTCGATTTGTAAAATTACCAAAATACCCCTGATTTATAAAATTACCA
*** * *
95785679 AAATACCCTCGATCAATAAAATTACCAAAATACCCCTGGTTTGTAAAATTACCA
1 AAATACCCTCGATTTGTAAAATTACCAAAATACCCCTGATTTATAAAATTACCA
* * * * * * *
95785733 AAATACCCTTGATTTGTGAAATTATCAAAATACCCCTGATTTGTGAAATTATCG
1 AAATACCCTCGATTTGTAAAATTACCAAAATACCCCTGATTTATAAAATTACCA
95785787 AAATACCCT
1 AAATACCCT
95785796 TGTAGAGTAG
Statistics
Matches: 145, Mismatches: 26, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
54 145 1.00
ACGTcount: A:0.40, C:0.23, G:0.08, T:0.29
Consensus pattern (54 bp):
AAATACCCTCGATTTGTAAAATTACCAAAATACCCCTGATTTATAAAATTACCA
Found at i:95785809 original size:27 final size:27
Alignment explanation
Indices: 95785786--95786001 Score: 279
Period size: 27 Copynumber: 8.0 Consensus size: 27
95785776 TGAAATTATC
* * *
95785786 GAAATACCCTTGTAGAGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACT
*
95785813 GAAATACCCCTGTAGGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACT
95785840 GAAATACCCCTGTAGGGTAGAATTACT
1 GAAATACCCCTGTAGGGTAGAATTACT
* * *
95785867 GAAATACCCTTGTAAGGTAGAAATACT
1 GAAATACCCCTGTAGGGTAGAATTACT
95785894 GAAATACCCCTGTAGGGTAGAATTACT
1 GAAATACCCCTGTAGGGTAGAATTACT
* ** * *
95785921 GAGATACCTTTTGTGGGGTAGAAATACT
1 GAAATACC-CCTGTAGGGTAGAATTACT
*
95785949 GAAATACCCCTGTAGGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACT
* * *
95785976 GAGATACCCTTGTAGGGTAAAATTAC
1 GAAATACCCCTGTAGGGTAGAATTAC
95786002 CATTTTGCCC
Statistics
Matches: 165, Mismatches: 23, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
27 143 0.87
28 22 0.13
ACGTcount: A:0.34, C:0.18, G:0.22, T:0.26
Consensus pattern (27 bp):
GAAATACCCCTGTAGGGTAGAATTACT
Found at i:95785810 original size:54 final size:53
Alignment explanation
Indices: 95785644--95785919 Score: 177
Period size: 54 Copynumber: 5.1 Consensus size: 53
95785634 CGATTTGTAA
* *** * * *
95785644 AATTACCAAAATACCCTTGGTTTACAAAATTACCAAAATACCCTCGATCA-A-TAA
1 AATTACCAAAATACCCCT-GTTTGTGAAATTACCGAAATACCCTTG-T-AGAGTAG
* * **
95785698 AATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTG-ATTTGT-G
1 AATTACCAAAATACCCCT-GTTTGTGAAATTACCGAAATACCCTTGTA-GAGTAG
* *
95785751 AAATTATCAAAATACCCCTGATTTGTGAAATTATCGAAATACCCTTGTAGAGTAG
1 -AATTACCAAAATACCCCTG-TTTGTGAAATTACCGAAATACCCTTGTAGAGTAG
* * * * *
95785806 AATTACCGAAATACCCCTG-TAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCAAAATACCCCTGTTTGTG-A-AATTACCGAAATACCCTTGTAGAGTAG
** * ** * * *
95785860 AATTACTGAAATACCCTTGTAAGGTAGAAA-TACTGAAATACCCCTGTAGGGTAG
1 AATTACCAAAATACCCCTGT-TTGT-GAAATTACCGAAATACCCTTGTAGAGTAG
95785914 AATTAC
1 AATTAC
95785920 TGAGATACCT
Statistics
Matches: 185, Mismatches: 25, Indels: 24
0.79 0.11 0.10
Matches are distributed among these distances:
51 1 0.01
52 3 0.02
53 2 0.01
54 172 0.93
55 4 0.02
56 2 0.01
57 1 0.01
ACGTcount: A:0.38, C:0.20, G:0.14, T:0.28
Consensus pattern (53 bp):
AATTACCAAAATACCCCTGTTTGTGAAATTACCGAAATACCCTTGTAGAGTAG
Found at i:95785837 original size:81 final size:81
Alignment explanation
Indices: 95785786--95786003 Score: 267
Period size: 82 Copynumber: 2.7 Consensus size: 81
95785776 TGAAATTATC
* *
95785786 GAAATACCCTTGT-AGAGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCC
1 GAAATACCCTTGTAAG-GTAGAAATACCGAAATACCCCTGTAGGGTAGAATTACCAAAATACCCC
95785850 TGTAGGGTAGAATTACT
65 TGTAGGGTAGAATTACT
* ** * **
95785867 GAAATACCCTTGTAAGGTAGAAATACTGAAATACCCCTGTAGGGTAGAATTACTGAGATACCTTT
1 GAAATACCCTTGTAAGGTAGAAATACCGAAATACCCCTGTAGGGTAGAATTACCAAAATACC-CC
* *
95785932 TGTGGGGTAGAAATACT
65 TGTAGGGTAGAATTACT
* * * * * *
95785949 GAAATACCCCTGTAGGGTAGAATTACCGAGATACCCTTGTAGGGTAAAATTACCA
1 GAAATACCCTTGTAAGGTAGAAATACCGAAATACCCCTGTAGGGTAGAATTACCA
95786004 TTTTGCCCCT
Statistics
Matches: 118, Mismatches: 17, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
81 55 0.47
82 63 0.53
ACGTcount: A:0.34, C:0.18, G:0.22, T:0.26
Consensus pattern (81 bp):
GAAATACCCTTGTAAGGTAGAAATACCGAAATACCCCTGTAGGGTAGAATTACCAAAATACCCCT
GTAGGGTAGAATTACT
Found at i:95786436 original size:6 final size:6
Alignment explanation
Indices: 95786397--95786487 Score: 69
Period size: 6 Copynumber: 14.8 Consensus size: 6
95786387 TTGCATTCAC
* * *
95786397 ATTCTG ATTTTG ATTCTG -TTACCTG ATACTG ATTCTG ATTTTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* * * *
95786446 ATTCTG -TCACCTG ATTTTG ATTATG ATTCTG ATTTTG ATTCT
1 ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCT
95786488 AGTCTGATAA
Statistics
Matches: 66, Mismatches: 13, Indels: 12
0.73 0.14 0.13
Matches are distributed among these distances:
5 3 0.05
6 55 0.83
7 6 0.09
8 2 0.03
ACGTcount: A:0.19, C:0.14, G:0.15, T:0.52
Consensus pattern (6 bp):
ATTCTG
Found at i:95786451 original size:37 final size:37
Alignment explanation
Indices: 95786397--95786487 Score: 128
Period size: 37 Copynumber: 2.5 Consensus size: 37
95786387 TTGCATTCAC
* *
95786397 ATTCTGATTTTGATTCTGTTACCTGATACTGATTCTG
1 ATTCTGATTTTGATTCTGTCACCTGATACTGATTATG
* * **
95786434 ATTTTGATTCTGATTCTGTCACCTGATTTTGATTATG
1 ATTCTGATTTTGATTCTGTCACCTGATACTGATTATG
95786471 ATTCTGATTTTGATTCT
1 ATTCTGATTTTGATTCT
95786488 AGTCTGATAA
Statistics
Matches: 46, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
37 46 1.00
ACGTcount: A:0.19, C:0.14, G:0.15, T:0.52
Consensus pattern (37 bp):
ATTCTGATTTTGATTCTGTCACCTGATACTGATTATG
Found at i:95786460 original size:31 final size:31
Alignment explanation
Indices: 95786397--95786479 Score: 100
Period size: 31 Copynumber: 2.7 Consensus size: 31
95786387 TTGCATTCAC
95786397 ATTCTGATTTTGATTCTG-TTACCTGATACTG
1 ATTCTGATTTTGATTCTGATTA-CTGATACTG
95786428 ATTCTGATTTTGATTCTGATT-CTG-TCACCTG
1 ATTCTGATTTTGATTCTGATTACTGAT-A-CTG
* *
95786459 ATTTTGATTATGATTCTGATT
1 ATTCTGATTTTGATTCTGATT
95786480 TTGATTCTAG
Statistics
Matches: 47, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
29 1 0.02
30 4 0.09
31 40 0.85
32 2 0.04
ACGTcount: A:0.19, C:0.14, G:0.16, T:0.51
Consensus pattern (31 bp):
ATTCTGATTTTGATTCTGATTACTGATACTG
Found at i:95787185 original size:45 final size:45
Alignment explanation
Indices: 95787135--95787269 Score: 207
Period size: 45 Copynumber: 3.0 Consensus size: 45
95787125 TTGGTGTGTT
* * *
95787135 ACAATATTCGACACACACAGTGCCGAATCAATAATAGTAGCAGTA
1 ACAATATTCGACACACAAAGTGCCGAATCAGTAACAGTAGCAGTA
* *
95787180 ACAATATTCAACACACAAAGTGCCGAATCTGTAACAGTAGCAGTA
1 ACAATATTCGACACACAAAGTGCCGAATCAGTAACAGTAGCAGTA
* *
95787225 ACAATATTCGACACACAAAGTGCGGAATCGGTAACAGTAGCAGTA
1 ACAATATTCGACACACAAAGTGCCGAATCAGTAACAGTAGCAGTA
95787270 GCGGTAACAG
Statistics
Matches: 82, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
45 82 1.00
ACGTcount: A:0.41, C:0.21, G:0.18, T:0.19
Consensus pattern (45 bp):
ACAATATTCGACACACAAAGTGCCGAATCAGTAACAGTAGCAGTA
Found at i:95787692 original size:5 final size:5
Alignment explanation
Indices: 95787678--95787714 Score: 56
Period size: 5 Copynumber: 7.2 Consensus size: 5
95787668 AATTAATCAT
*
95787678 AATTC CATTC AATTC AATTC AATTC AATTC AAATTC A
1 AATTC AATTC AATTC AATTC AATTC AATTC -AATTC A
95787715 CCTTTCCACT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
5 24 0.83
6 5 0.17
ACGTcount: A:0.41, C:0.22, G:0.00, T:0.38
Consensus pattern (5 bp):
AATTC
Found at i:95787702 original size:15 final size:16
Alignment explanation
Indices: 95787665--95787714 Score: 61
Period size: 15 Copynumber: 3.2 Consensus size: 16
95787655 CAATACACAT
95787665 TTCAATT-AA-TCATAA
1 TTCAATTCAATTCA-AA
*
95787680 TTCCATTCAATTC-AA
1 TTCAATTCAATTCAAA
95787695 TTCAATTCAATTCAAA
1 TTCAATTCAATTCAAA
95787711 TTCA
1 TTCA
95787715 CCTTTCCACT
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
15 20 0.67
16 8 0.27
17 2 0.07
ACGTcount: A:0.40, C:0.20, G:0.00, T:0.40
Consensus pattern (16 bp):
TTCAATTCAATTCAAA
Done.