Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr02 99090824
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 99090824
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 317 characters in sequence are not A, C, G, or T
File 31 of 318
Found at i:8373343 original size:137 final size:136
Alignment explanation
Indices: 8373097--8373382 Score: 518
Period size: 137 Copynumber: 2.1 Consensus size: 136
8373087 CATTGGGCCT
** *
8373097 AAGCCCATTCAGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTAGGCCTT
*
8373162 AGCCCCTTATTCAGATAACAGTAGGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
66 AGCCCCTTATTCAGATAACAGTAGGGCCCATAGGCCCATTTCAAAATACATGCAACATCAAT-AA
8373227 CATATGC
130 CATATGC
8373234 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTAGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTAGGCCTT
*
8373299 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAC
66 AGCCCCTTATTCAGATAACAGTAGGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAC
8373364 ATATGC
131 ATATGC
8373370 AAGCCCATTTGGG
1 AAGCCCATTTGGG
8373383 GAGACTACTC
Statistics
Matches: 144, Mismatches: 5, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
136 22 0.15
137 122 0.85
ACGTcount: A:0.32, C:0.25, G:0.19, T:0.24
Consensus pattern (136 bp):
AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTAGGCCTT
AGCCCCTTATTCAGATAACAGTAGGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAC
ATATGC
Found at i:8375196 original size:26 final size:26
Alignment explanation
Indices: 8375160--8375243 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
8375150 CATGAAATTC
8375160 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
8375186 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
8375212 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
8375238 TTATCA
1 TTATCA
8375244 ATTTGTATCA
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.37, C:0.25, G:0.05, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:8379221 original size:137 final size:135
Alignment explanation
Indices: 8379014--8379298 Score: 525
Period size: 137 Copynumber: 2.1 Consensus size: 135
8379004 CATTGGGCCT
**
8379014 AAGCCCATTCAGGTAACAGTGGTACTGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTTA
1 AAGCCCATTTGGGTAACAGTGGTACTGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTTA
*
8379079 GCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAAC
66 GCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAAT-AAC
8379144 ATATGC
130 ATATGC
8379150 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACT-GGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
8379215 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAC
65 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAC
8379280 ATATGC
130 ATATGC
8379286 AAGCCCATTTGGG
1 AAGCCCATTTGGG
8379299 GAGACTACTC
Statistics
Matches: 145, Mismatches: 3, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
136 46 0.32
137 99 0.68
ACGTcount: A:0.32, C:0.25, G:0.19, T:0.25
Consensus pattern (135 bp):
AAGCCCATTTGGGTAACAGTGGTACTGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTTA
GCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAACA
TATGC
Found at i:8379257 original size:64 final size:64
Alignment explanation
Indices: 8379047--8379257 Score: 151
Period size: 64 Copynumber: 3.2 Consensus size: 64
8379037 ACTGGCCAGA
*
8379047 GCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
1 GCCCATTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
* * * *** * ** *
8379111 GCCCATTTCAAAATAC-ATGCAACATCAGTAAACATATGCAAGCCC--ATTTGGGTAACAGTGGT
1 GCCCATTTCAGATTACAAT--AA-A-CTG-GGCCTTA-GC---CCCTTATTCAGATAACA---GT
* *
8379173 ACTGGGCCAGA-
54 A-TGGCCCATAG
*
8379184 GCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
1 GCCCATTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
8379248 GCCCATTTCA
1 GCCCATTTCA
8379258 AAATACATGC
Statistics
Matches: 103, Mismatches: 27, Indels: 34
0.63 0.16 0.21
Matches are distributed among these distances:
63 9 0.09
64 25 0.24
65 5 0.05
66 1 0.01
67 11 0.11
68 5 0.05
69 5 0.05
70 11 0.11
71 1 0.01
72 5 0.05
73 16 0.16
74 9 0.09
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (64 bp):
GCCCATTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
Found at i:8381130 original size:26 final size:26
Alignment explanation
Indices: 8381075--8381157 Score: 141
Period size: 26 Copynumber: 3.2 Consensus size: 26
8381065 CATGAAATTC
8381075 TTATCATGAAACATTTACC-AACCCA
1 TTATCATGAAACATTTACCTAACCCA
8381100 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
8381126 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
8381152 TTATCA
1 TTATCA
8381158 ATTTGTATCA
Statistics
Matches: 55, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
25 19 0.35
26 36 0.65
ACGTcount: A:0.37, C:0.25, G:0.05, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:8385859 original size:11 final size:11
Alignment explanation
Indices: 8385843--8385867 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
8385833 CAAAAGGACC
8385843 AAATTAAAATG
1 AAATTAAAATG
8385854 AAATTAAAATG
1 AAATTAAAATG
8385865 AAA
1 AAA
8385868 GGGATGATTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.68, C:0.00, G:0.08, T:0.24
Consensus pattern (11 bp):
AAATTAAAATG
Found at i:8387392 original size:15 final size:15
Alignment explanation
Indices: 8387372--8387407 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
8387362 CTCGCTACTT
8387372 CAACTTGCTCCACTG
1 CAACTTGCTCCACTG
* *
8387387 CAACTTGCTTCGCTG
1 CAACTTGCTCCACTG
8387402 CAACTT
1 CAACTT
8387408 CAGAGAGATA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.19, C:0.36, G:0.14, T:0.31
Consensus pattern (15 bp):
CAACTTGCTCCACTG
Found at i:8387596 original size:90 final size:89
Alignment explanation
Indices: 8387476--8387917 Score: 435
Period size: 90 Copynumber: 4.9 Consensus size: 89
8387466 TTTATTTATA
* * * * *
8387476 GCTTCAATCTATTCCACTGCATCTTTAGGGAGATAAGGTTTGCGTATTTTTATCTTGCTCTACTA
1 GCTTCGATCTACTCCACTGCAACTTTAGGGAGATAAGATTTGCGTATTTTTATC-TGCTCTACTG
**
8387541 CAACTTCAGAGAGATAAGGATCATG
65 CAACTTCAGAGAGATAAGGATTTTG
* * * * * * *
8387566 GTTTTGATCTATTCCACTGCAACTTCAGGGAGATAAGATCTGC-TATCTTTAGTCTGCTCGACTG
1 GCTTCGATCTACTCCACTGCAACTTTAGGGAGATAAGATTTGCGTATTTTTA-TCTGCTCTACTG
* * * *
8387630 CAATTTCAGGGAGATAA-TATTTGCTA
65 CAACTTCAGAGAGATAAGGATTT--TG
* * * * * *
8387656 TCTTC-AGTCTGCTCCACTGCAACTTTAGGGAGATAAAACTTGGGTAATTTTATCCTGCTCTACT
1 GCTTCGA-TCTACTCCACTGCAACTTTAGGGAGATAAGATTTGCGTATTTTTAT-CTGCTCTACT
* *
8387720 GTAACTTCAGAGAGGTAAGGATTTTG
64 GCAACTTCAGAGAGATAAGGATTTTG
* * * * * *
8387746 GCTTCGATCTGA-TCCGCTGCAACTTCAGGAAGATAAGGTTTGTGTAATTTTATCCTGCTCTACT
1 GCTTCGATCT-ACTCCACTGCAACTTTAGGGAGATAAGATTTGCGTATTTTTAT-CTGCTCTACT
*
8387810 GCAACTTCAGAGAGATAAGGATTGTG
64 GCAACTTCAGAGAGATAAGGATTTTG
* * *
8387836 GCTTCGATCTACTCCACTGCAACTTTAGGGAGACAAGATTTGC-TATCTTTAGTCTGCTCCACTG
1 GCTTCGATCTACTCCACTGCAACTTTAGGGAGATAAGATTTGCGTATTTTTA-TCTGCTCTACTG
*
8387900 CACCTTCAGAGAGATAAG
65 CAACTTCAGAGAGATAAG
8387918 ACTTGCGTAT
Statistics
Matches: 284, Mismatches: 57, Indels: 23
0.78 0.16 0.06
Matches are distributed among these distances:
88 2 0.01
89 65 0.23
90 183 0.64
91 30 0.11
92 4 0.01
ACGTcount: A:0.26, C:0.20, G:0.21, T:0.33
Consensus pattern (89 bp):
GCTTCGATCTACTCCACTGCAACTTTAGGGAGATAAGATTTGCGTATTTTTATCTGCTCTACTGC
AACTTCAGAGAGATAAGGATTTTG
Found at i:8387901 original size:45 final size:44
Alignment explanation
Indices: 8387488--8387923 Score: 271
Period size: 45 Copynumber: 9.7 Consensus size: 44
8387478 TTCAATCTAT
* * * *
8387488 TCCACTGCATCTTTAGGGAGATAAGGTTTGCGTATTTTTATCTTGC
1 TCCACTGCAACTTCAGGGAGATAAGATTTGC-TATCTTTATC-TGC
* * * * * * **
8387534 TCTACTACAACTTCAGAGAGATAAGGATCATGGT-T-TTGATCTAT
1 TCCACTGCAACTTCAGGGAGATAA-GAT-TTGCTATCTTTATCTGC
*
8387578 TCCACTGCAACTTCAGGGAGATAAGATCTGCTATCTTTAGTCTGC
1 TCCACTGCAACTTCAGGGAGATAAGATTTGCTATCTTTA-TCTGC
* * * *
8387623 TCGACTGCAATTTCAGGGAGATAATATTTGCTATCTTCAGTCTGC
1 TCCACTGCAACTTCAGGGAGATAAGATTTGCTATCTTTA-TCTGC
* * * *
8387668 TCCACTGCAACTTTAGGGAGATAAAACTTGGGTAAT-TTTATCCTGC
1 TCCACTGCAACTTCAGGGAGATAAGA-TTTGCT-ATCTTTAT-CTGC
* * * * * *
8387714 TCTACTGTAACTTCAGAGAGGTAAGGATTTTGGCT-TC--GATCTGA
1 TCCACTGCAACTTCAGGGAGATAA-GA-TTT-GCTATCTTTATCTGC
* * * *
8387758 TCCGCTGCAACTTCAGGAAGATAAGGTTTGTGTAAT-TTTATCCTGC
1 TCCACTGCAACTTCAGGGAGATAAGATTTG-CT-ATCTTTAT-CTGC
* * * *
8387804 TCTACTGCAACTTCAGAGAGATAAGGATTGTGGCT-TC--GATCTAC
1 TCCACTGCAACTTCAGGGAGATAA-GATT-T-GCTATCTTTATCTGC
* *
8387848 TCCACTGCAACTTTAGGGAGACAAGATTTGCTATCTTTAGTCTGC
1 TCCACTGCAACTTCAGGGAGATAAGATTTGCTATCTTTA-TCTGC
* * *
8387893 TCCACTGCACCTTCAGAGAGATAAGACTTGC
1 TCCACTGCAACTTCAGGGAGATAAGATTTGC
8387924 GTATTTTGAC
Statistics
Matches: 294, Mismatches: 71, Indels: 51
0.71 0.17 0.12
Matches are distributed among these distances:
41 4 0.01
42 10 0.03
43 9 0.03
44 71 0.24
45 107 0.36
46 75 0.26
47 11 0.04
48 6 0.02
49 1 0.00
ACGTcount: A:0.26, C:0.20, G:0.21, T:0.33
Consensus pattern (44 bp):
TCCACTGCAACTTCAGGGAGATAAGATTTGCTATCTTTATCTGC
Found at i:8393617 original size:251 final size:251
Alignment explanation
Indices: 8393174--8393678 Score: 956
Period size: 251 Copynumber: 2.0 Consensus size: 251
8393164 TGCTTTGTCA
8393174 TCTGTCTCTAAATATGGTGCATCACTGCTTACAACTACAATGATATCCTCTTCAGCATTTATCGT
1 TCTGTCTCTAAATATGGTGCATCACTGCTTACAACTACAATGATATCCTCTTCAGCATTTATCGT
8393239 TATCAACCGACCCTCTAATACTAACTTCAATTTCTGATACAACGATGAAGGCACTGCCCCTGCTG
66 TATCAACCGACCCTCTAATACTAACTTCAATTTCTGATACAACGATGAAGGCACTGCCCCTGCTG
* *
8393304 AATGTATCCAAGGTCTTCCTCAGAGGCATTTGTATGCGGGTTTGGTATCCATATCCAAAAAGTTC
131 AATGTATCCAAGGTCTTCCTCAGAGGCATTTGTATGCGGGTTTGGTATCCATAACCAAAAAGTCC
* *
8393369 ACCTCATATGTAGTTGGGCCAATCAATAAAGGTATTTCTATTCTTTCCATGACTCT
196 ACCTCATATGTAGTTGGGCCAATCAATAAAGGTATTTCTATTATTTCCATAACTCT
*
8393425 TCTGTCTCTAAATATGGTGCATCACTGCTTACAACTGCAATGATATCCTCTTCAGCATTTATCGT
1 TCTGTCTCTAAATATGGTGCATCACTGCTTACAACTACAATGATATCCTCTTCAGCATTTATCGT
8393490 TATCAACCGACCCTCTAATACTAACTTCAATTTCTGATACAACGATGAAGGCACTGCCCCTGCTG
66 TATCAACCGACCCTCTAATACTAACTTCAATTTCTGATACAACGATGAAGGCACTGCCCCTGCTG
8393555 AATGTATCCAAGGTCTTCCTCAGAGGCATTTGTATGCGGGTTTGGTATCCATAACCAAAAAGTCC
131 AATGTATCCAAGGTCTTCCTCAGAGGCATTTGTATGCGGGTTTGGTATCCATAACCAAAAAGTCC
*
8393620 ACCTCATATGTTGTTGGGCCAATCAATAAAGGTATTTCTATTATTTCCATAACTCT
196 ACCTCATATGTAGTTGGGCCAATCAATAAAGGTATTTCTATTATTTCCATAACTCT
8393676 TCT
1 TCT
8393679 TTCTGTGCCA
Statistics
Matches: 248, Mismatches: 6, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
251 248 1.00
ACGTcount: A:0.27, C:0.24, G:0.15, T:0.33
Consensus pattern (251 bp):
TCTGTCTCTAAATATGGTGCATCACTGCTTACAACTACAATGATATCCTCTTCAGCATTTATCGT
TATCAACCGACCCTCTAATACTAACTTCAATTTCTGATACAACGATGAAGGCACTGCCCCTGCTG
AATGTATCCAAGGTCTTCCTCAGAGGCATTTGTATGCGGGTTTGGTATCCATAACCAAAAAGTCC
ACCTCATATGTAGTTGGGCCAATCAATAAAGGTATTTCTATTATTTCCATAACTCT
Found at i:8400344 original size:27 final size:27
Alignment explanation
Indices: 8400311--8400441 Score: 181
Period size: 27 Copynumber: 4.9 Consensus size: 27
8400301 ATTACCAAAG
* *
8400311 TACCCTCGATTTATAAAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
* **
8400338 TATCCTCGATTTACAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACTGTTT
*
8400365 TACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
*
8400392 TACCCTTGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
* *
8400419 TACCCTTGATTTACAAAATTACT
1 TACCCTCGATTTACAGAATTACT
8400442 AAAATACCCT
Statistics
Matches: 92, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 92 1.00
ACGTcount: A:0.29, C:0.20, G:0.08, T:0.43
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACTGTTT
Found at i:8400360 original size:54 final size:54
Alignment explanation
Indices: 8400300--8400494 Score: 196
Period size: 54 Copynumber: 3.6 Consensus size: 54
8400290 CAAATTGTAA
* *
8400300 AATTACCAAAGTACCCTCGATTTATAAAATTACTGTTTTATCCTCGATTTACAG
1 AATTACCAAATTACCCTCGATTTATAAAATTACTGTTTTACCCTCGATTTACAG
** * *
8400354 AATTACCATTTTACCCTCGATTTATAGAATTACTGTTTTACCCTTGATTTACAG
1 AATTACCAAATTACCCTCGATTTATAAAATTACTGTTTTACCCTCGATTTACAG
**** * * **** *
8400408 AATTACTGTTTTACCCTTGATTTACAAAATTACTAAAATACCCTC-AGTTTACAA
1 AATTACCAAATTACCCTCGATTTATAAAATTACTGTTTTACCCTCGA-TTTACAG
*
8400462 AATTACCAAAATACCCTCGA-TTAGTAAAATTAC
1 AATTACCAAATTACCCTCGATTTA-TAAAATTAC
8400495 CAAAATACCC
Statistics
Matches: 115, Mismatches: 24, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
53 4 0.03
54 111 0.97
ACGTcount: A:0.35, C:0.21, G:0.08, T:0.37
Consensus pattern (54 bp):
AATTACCAAATTACCCTCGATTTATAAAATTACTGTTTTACCCTCGATTTACAG
Found at i:8400449 original size:27 final size:27
Alignment explanation
Indices: 8400419--8400779 Score: 239
Period size: 27 Copynumber: 13.3 Consensus size: 27
8400409 ATTACTGTTT
* *
8400419 TACCCTTGATTTACAAAATTACTAAAA
1 TACCCTTGATTTATAAAATTACCAAAA
* *
8400446 TACCC-TCAGTTTACAAAATTACCAAAA
1 TACCCTTGA-TTTATAAAATTACCAAAA
*
8400473 TACCCTCGA-TTAGTAAAATTACCAAAA
1 TACCCTTGATTTA-TAAAATTACCAAAA
* * * * *
8400500 TACCCTAG-TCTGTAAAATTGCTAAAA
1 TACCCTTGATTTATAAAATTACCAAAA
* * *
8400526 TACCCTTGGTTTGTAAAATTACCGAAA
1 TACCCTTGATTTATAAAATTACCAAAA
** * *
8400553 TACCCTCAATTTTTAAAACTACCAAAA
1 TACCCTTGATTTATAAAATTACCAAAA
* *
8400580 TACCCCT-AGTTTGTAAAATTACCAAAA
1 TACCCTTGA-TTTATAAAATTACCAAAA
* * * *
8400607 TACCAC-TGGTTTGTGAAATTACCGAAA
1 TACC-CTTGATTTATAAAATTACCAAAA
** *
8400634 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTTGATTTATAAAATTACCAAAA
* *
8400661 TACCCTTGATTTACAAAGTTA-CAGAAA
1 TACCCTTGATTTATAAAATTACCA-AAA
* **
8400688 TACCCTTGACTTTCTAAAAATTATGAAAA
1 TACCCTTGA-TTTAT-AAAATTACCAAAA
* * * **
8400717 TACCATTGGTTTAACAAAATTACTGAAA
1 TACCCTTGATTT-ATAAAATTACCAAAA
* * * *
8400745 TACCCTTGGTTTGTAGATTTACCAAAA
1 TACCCTTGATTTATAAAATTACCAAAA
*
8400772 CACCCTTG
1 TACCCTTG
8400780 TAGGATGAAA
Statistics
Matches: 263, Mismatches: 57, Indels: 28
0.76 0.16 0.08
Matches are distributed among these distances:
26 28 0.11
27 189 0.72
28 29 0.11
29 16 0.06
30 1 0.00
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.31
Consensus pattern (27 bp):
TACCCTTGATTTATAAAATTACCAAAA
Found at i:8400477 original size:81 final size:81
Alignment explanation
Indices: 8400266--8400483 Score: 204
Period size: 81 Copynumber: 2.7 Consensus size: 81
8400256 AATACTTTAG
* * * ** * * *
8400266 TTTACCAAATTACTGAAATACCTTCAAATTGTAAAATTACCAAAGTACCCTCGATTTATAAAATT
1 TTTACAAAATTACTAAAATACCCTCAGTTTATAAAATTACCAAAATACCCTCGATTTACAAAATT
*
8400331 ACTGTTTTATCCTCGA
66 ACTGTTTTACCCTCGA
* * *** * ***** * *
8400347 TTTACAGAATTACCATTTTACCCTC-GATTTATAGAATTACTGTTTTACCCTTGATTTACAGAAT
1 TTTACAAAATTACTAAAATACCCTCAG-TTTATAAAATTACCAAAATACCCTCGATTTACAAAAT
*
8400411 TACTGTTTTACCCTTGA
65 TACTGTTTTACCCTCGA
*
8400428 TTTACAAAATTACTAAAATACCCTCAGTTTACAAAATTACCAAAATACCCTCGATT
1 TTTACAAAATTACTAAAATACCCTCAGTTTATAAAATTACCAAAATACCCTCGATT
8400484 AGTAAAATTA
Statistics
Matches: 100, Mismatches: 35, Indels: 4
0.72 0.25 0.03
Matches are distributed among these distances:
81 99 0.99
82 1 0.01
ACGTcount: A:0.35, C:0.21, G:0.07, T:0.37
Consensus pattern (81 bp):
TTTACAAAATTACTAAAATACCCTCAGTTTATAAAATTACCAAAATACCCTCGATTTACAAAATT
ACTGTTTTACCCTCGA
Found at i:8400500 original size:54 final size:53
Alignment explanation
Indices: 8400419--8400777 Score: 263
Period size: 54 Copynumber: 6.6 Consensus size: 53
8400409 ATTACTGTTT
* ** * *
8400419 TACCCTTGATTTACAAAATTACTAAAATACCCTCAGTTTACAAAATTACCAAAA
1 TACCCTCGATTTGTAAAATTACCAAAATACCCT-AGTTTATAAAATTACCAAAA
* * * * *
8400473 TACCCTCGATTAGTAAAATTACCAAAATACCCTAGTCTGTAAAATTGCTAAAA
1 TACCCTCGATTTGTAAAATTACCAAAATACCCTAGTTTATAAAATTACCAAAA
* * * * * *
8400526 TACCCTTGGTTTGTAAAATTACCGAAATACCCTCAATTTTTAAAACTACCAAAA
1 TACCCTCGATTTGTAAAATTACCAAAATACCCT-AGTTTATAAAATTACCAAAA
* * * * *
8400580 TACCC-CTAGTTTGTAAAATTACCAAAATACCACTGGTTTGTGAAATTACCGAAA
1 TACCCTCGA-TTTGTAAAATTACCAAAATACC-CTAGTTTATAAAATTACCAAAA
* * * *
8400634 TACCCTCAATTTGTAAAATTACCAAAATACCCTTGATTTACAAAGTTA-CAGAAA
1 TACCCTCGATTTGTAAAATTACCAAAATACCCTAG-TTTATAAAATTACCA-AAA
* * ** * * * **
8400688 TACCCTTGACTTTCTAAAAATTATGAAAATACCATTGGTTTAACAAAATTACTGAAA
1 TACCCTCGA-TTTGT-AAAATTACCAAAATACC-CTAGTTT-ATAAAATTACCAAAA
* * * * *
8400745 TACCCTTGGTTTGTAGATTTACCAAAACACCCT
1 TACCCTCGATTTGTAAAATTACCAAAATACCCT
8400778 TGTAGGATGA
Statistics
Matches: 239, Mismatches: 55, Indels: 22
0.76 0.17 0.07
Matches are distributed among these distances:
53 48 0.20
54 128 0.54
55 20 0.08
56 22 0.09
57 21 0.09
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.31
Consensus pattern (53 bp):
TACCCTCGATTTGTAAAATTACCAAAATACCCTAGTTTATAAAATTACCAAAA
Found at i:8400504 original size:81 final size:80
Alignment explanation
Indices: 8400419--8400693 Score: 313
Period size: 81 Copynumber: 3.4 Consensus size: 80
8400409 ATTACTGTTT
* ** * *
8400419 TACCCTTGATTTACAAAATTACTAAAATACCCTCAGTTTACAAAATTACCAAAATACCCTCGATT
1 TACCCTTGATTTACAAAATTACTAAAATACCCT-GGTTTGTAAAATTACCGAAATACCCTCAATT
*
8400484 AGTAAAATTACCAAAA
65 TGTAAAATTACCAAAA
* * ** *
8400500 TACCCTAG-TCTGTAAAATTGCTAAAATACCCTTGGTTTGTAAAATTACCGAAATACCCTCAATT
1 TACCCTTGATTTACAAAATTACTAAAATACCC-TGGTTTGTAAAATTACCGAAATACCCTCAATT
* *
8400564 TTTAAAACTACCAAAA
65 TGTAAAATTACCAAAA
* ** * *
8400580 TACCCCT-AGTTTGTAAAATTACCAAAATACCACTGGTTTGTGAAATTACCGAAATACCCTCAAT
1 TACCCTTGA-TTTACAAAATTACTAAAATACC-CTGGTTTGTAAAATTACCGAAATACCCTCAAT
8400644 TTGTAAAATTACCAAAA
64 TTGTAAAATTACCAAAA
*
8400661 TACCCTTGATTTACAAAGTTAC-AGAAATACCCT
1 TACCCTTGATTTACAAAATTACTA-AAATACCCT
8400694 TGACTTTCTA
Statistics
Matches: 163, Mismatches: 25, Indels: 13
0.81 0.12 0.06
Matches are distributed among these distances:
80 66 0.40
81 95 0.58
82 2 0.01
ACGTcount: A:0.40, C:0.22, G:0.08, T:0.30
Consensus pattern (80 bp):
TACCCTTGATTTACAAAATTACTAAAATACCCTGGTTTGTAAAATTACCGAAATACCCTCAATTT
GTAAAATTACCAAAA
Found at i:8400840 original size:27 final size:27
Alignment explanation
Indices: 8400810--8400889 Score: 126
Period size: 27 Copynumber: 3.0 Consensus size: 27
8400800 ACCCCTATTA
*
8400810 GGTAAAAAGACCGTAAAGCCCCTGTAG
1 GGTAAAGAGACCGTAAAGCCCCTGTAG
8400837 GGTAAAGAGACCGTAAAGCCCCTGTAG
1 GGTAAAGAGACCGTAAAGCCCCTGTAG
*
8400864 GGTAAAGTGACCGTAATA-CCCCTGTA
1 GGTAAAGAGACCGTAA-AGCCCCTGTA
8400890 TGATAAAATG
Statistics
Matches: 50, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
27 49 0.98
28 1 0.02
ACGTcount: A:0.34, C:0.23, G:0.26, T:0.17
Consensus pattern (27 bp):
GGTAAAGAGACCGTAAAGCCCCTGTAG
Found at i:8400901 original size:27 final size:27
Alignment explanation
Indices: 8400810--8400901 Score: 116
Period size: 27 Copynumber: 3.4 Consensus size: 27
8400800 ACCCCTATTA
*
8400810 GGTAAAAAGACCGTAAAGCCCCTGTAG
1 GGTAAAATGACCGTAAAGCCCCTGTAG
8400837 GGTAAAGA-GACCGTAAAGCCCCTGTAG
1 GGTAAA-ATGACCGTAAAGCCCCTGTAG
* *
8400864 GGTAAAGTGACCGTAATA-CCCCTGTAT
1 GGTAAAATGACCGTAA-AGCCCCTGTAG
*
8400891 GATAAAATGAC
1 GGTAAAATGAC
8400902 GAATGTGCCC
Statistics
Matches: 58, Mismatches: 4, Indels: 6
0.85 0.06 0.09
Matches are distributed among these distances:
27 56 0.97
28 2 0.03
ACGTcount: A:0.36, C:0.21, G:0.25, T:0.18
Consensus pattern (27 bp):
GGTAAAATGACCGTAAAGCCCCTGTAG
Found at i:8407416 original size:36 final size:35
Alignment explanation
Indices: 8407350--8407434 Score: 82
Period size: 36 Copynumber: 2.4 Consensus size: 35
8407340 GAACTAAAAC
* * *
8407350 TGTGATCATAAATCAGCAAGCTTTAAAAATGTCAGT
1 TGTGATCGTAAATCAACAAACTTTAAAAATG-CAGT
* * *
8407386 TGTGATCGTAAATCAACAAACTATT-TAAATGGATT
1 TGTGATCGTAAATCAACAAACT-TTAAAAATGCAGT
*
8407421 TATGATCGTAAATC
1 TGTGATCGTAAATC
8407435 GATGAACTCT
Statistics
Matches: 41, Mismatches: 7, Indels: 3
0.80 0.14 0.06
Matches are distributed among these distances:
35 15 0.37
36 24 0.59
37 2 0.05
ACGTcount: A:0.39, C:0.13, G:0.15, T:0.33
Consensus pattern (35 bp):
TGTGATCGTAAATCAACAAACTTTAAAAATGCAGT
Found at i:8407434 original size:35 final size:34
Alignment explanation
Indices: 8407388--8407541 Score: 91
Period size: 35 Copynumber: 4.4 Consensus size: 34
8407378 ATGTCAGTTG
8407388 TGATCGTAAATCAACAAACTATTTAAATGGATTTA
1 TGATCGTAAATCAACAAACT-TTTAAATGGATTTA
* ** * *
8407423 TGATCGTAAATCGATGAACTCTT-AATGAATTTTTCA
1 TGATCGTAAATCAACAAACTTTTAAATGGA--TTT-A
* * *
8407459 TGATCGTAAACCAA-AGAGTTTTAAAAATGAGAATTT-
1 TGATCGTAAATCAACAAACTTTT--AAATG-G-ATTTA
* *
8407495 TGATCGTAAATCAACGAACTATTTAAATGG-TGTTG
1 TGATCGTAAATCAACAAACT-TTTAAATGGAT-TTA
*
8407530 CGATCGTAAATC
1 TGATCGTAAATC
8407542 GATAAACTCT
Statistics
Matches: 90, Mismatches: 17, Indels: 24
0.69 0.13 0.18
Matches are distributed among these distances:
33 6 0.07
34 4 0.04
35 36 0.40
36 31 0.34
37 2 0.02
38 10 0.11
40 1 0.01
ACGTcount: A:0.38, C:0.12, G:0.16, T:0.34
Consensus pattern (34 bp):
TGATCGTAAATCAACAAACTTTTAAATGGATTTA
Found at i:8407523 original size:36 final size:36
Alignment explanation
Indices: 8407388--8407523 Score: 104
Period size: 36 Copynumber: 3.8 Consensus size: 36
8407378 ATGTCAGTTG
*
8407388 TGATCGTAAATCAACAAACTATTTAAATG-G-ATTTA
1 TGATCGTAAATCAACGAACT-TTTAAATGAGAATTTA
* * * *
8407423 TGATCGTAAATCGATGAACTCTT-AATGA-ATTTTTCA
1 TGATCGTAAATCAACGAACTTTTAAATGAGA-ATTT-A
* * *
8407459 TGATCGTAAACCAAAG-AGTTTTAAAAATGAGAATTT-
1 TGATCGTAAATCAACGAACTTTT--AAATGAGAATTTA
8407495 TGATCGTAAATCAACGAACTATTTAAATG
1 TGATCGTAAATCAACGAACT-TTTAAATG
8407524 GTGTTGCGAT
Statistics
Matches: 77, Mismatches: 14, Indels: 19
0.70 0.13 0.17
Matches are distributed among these distances:
33 4 0.05
34 2 0.03
35 24 0.31
36 33 0.43
37 2 0.03
38 11 0.14
39 1 0.01
ACGTcount: A:0.40, C:0.12, G:0.14, T:0.34
Consensus pattern (36 bp):
TGATCGTAAATCAACGAACTTTTAAATGAGAATTTA
Found at i:8407650 original size:134 final size:130
Alignment explanation
Indices: 8407459--8407927 Score: 458
Period size: 134 Copynumber: 3.6 Consensus size: 130
8407449 GAATTTTTCA
* * * * * * *
8407459 TGATCGTAAACCAAAGAGTTTTAAAAATGAGAATTTTGATCGTAAATCAACGAACTATTTAAATG
1 TGATCGTAAATCAACGAGCTTTAAAAATGACAATTGTGATCGTAAATCAGCAAACTATTTAAATG
* * * *
8407524 GTGTTGCGATCGTAAATCGATAAACTCTTAATGAATTGTTCATGATCATAAATCAATTTTCTAAA
66 GAGTTGTGATCATAAATCGATGAACTCTTAATGAATTGTTCATGATCATAAATCAA--TTCT-AA
8407589 GCTG
128 G-TG
* * *
8407593 TGATCGTAAATCAACGAGCTTTAAAAATGATAACTGTGATCGTAAATCAGCAAACTATTTAAATA
1 TGATCGTAAATCAACGAGCTTTAAAAATGACAATTGTGATCGTAAATCAGCAAACTATTTAAATG
* * * * *
8407658 GAGTTGTGATCATAAATCTG-TGAACTTTTCATGAATTATTCATGAT--T--GT-AA-GC--AGT
66 GAGTTGTGATCATAAATC-GATGAACTCTTAATGAATTGTTCATGATCATAAATCAATTCTAAGT
8407714 -
130 G
* * * * *
8407714 T-ATCATAAATCAACGAGCTTTAAAAATGACAGTTGTAATCGTAAATTAGCAAACTGTTTAAATG
1 TGATCGTAAATCAACGAGCTTTAAAAATGACAATTGTGATCGTAAATCAGCAAACTATTTAAATG
* *
8407778 GAGTTGTGATCATAAATCAACGAACTCTTAATGAATTGTTCATGATCATAAATCAATGAAT-TGA
66 GAGTTGTGATCATAAATCGATGAACTCTTAATGAATTGTTCATGATCATAAATCAAT---TCT-A
8407842 AGTTG
127 AG-TG
* ** * * *
8407847 TAATCGTAAATCGGCAAGCTTTAAAAATGACAATTATGATCGTAAATCAGCAAACTATTTAAATA
1 TGATCGTAAATCAACGAGCTTTAAAAATGACAATTGTGATCGTAAATCAGCAAACTATTTAAATG
**
8407912 GAGTTGCAATCATAAA
66 GAGTTGTGATCATAAA
8407928 CTGACAAACT
Statistics
Matches: 273, Mismatches: 45, Indels: 34
0.78 0.13 0.10
Matches are distributed among these distances:
120 95 0.35
121 1 0.00
122 2 0.01
123 2 0.01
124 1 0.00
125 2 0.01
126 1 0.00
129 2 0.01
130 1 0.00
131 2 0.01
132 2 0.01
133 1 0.00
134 160 0.59
135 1 0.00
ACGTcount: A:0.39, C:0.13, G:0.16, T:0.32
Consensus pattern (130 bp):
TGATCGTAAATCAACGAGCTTTAAAAATGACAATTGTGATCGTAAATCAGCAAACTATTTAAATG
GAGTTGTGATCATAAATCGATGAACTCTTAATGAATTGTTCATGATCATAAATCAATTCTAAGTG
Found at i:8407694 original size:241 final size:245
Alignment explanation
Indices: 8407295--8407927 Score: 679
Period size: 254 Copynumber: 2.6 Consensus size: 245
8407285 GTTATGATTG
** * ** * *
8407295 TAAATCAGGAAACTCTTAATGAATTGTTCAGGATTGTAAATCAATGAA-CTAAAACTGTGATCAT
1 TAAATCAACAAACTCTTAATGAATTGTTCATGATCATAAATCAAT-AATCTAAAGCTGTGATCGT
* * * * *
8407359 AAATCAGCAAGCTTTAAAAATG-TCAGTTGTGATCGTAAATCAACAAACTATTTAAATGGATTTA
65 AAATCAGCAAGCTTTAAAAATGAT-AATTGTGATCGTAAATCAGCAAACTATTTAAATAGAGTTG
* * *
8407423 TGATCGTAAATCGATGAACTCTTAATGAATTTTTCATGA-T-C-G-TAAACCAAAGAGTTTTAAA
129 TGATCATAAATCGATGAACTCTTAATGAATTATTCATGATTACAGTTAAACCAAAGAGCTTTAAA
* * * * * *
8407484 AATGAGAATTTTGATCGTAAATCAACGAACTATTTAAATGGTGTTGCGATCG
194 AATGACAATTGTAATCGTAAATCAACAAACTATTTAAATGGAGTTGCGATCA
* * **
8407536 TAAATCGATAAACTCTTAATGAATTGTTCATGATCATAAATCAATTTTCTAAAGCTGTGATCGTA
1 TAAATCAACAAACTCTTAATGAATTGTTCATGATCATAAATCAATAATCTAAAGCTGTGATCGTA
* * *
8407601 AATCAACGAGCTTTAAAAATGATAACTGTGATCGTAAATCAGCAAACTATTTAAATAGAGTTGTG
66 AATCAGCAAGCTTTAAAAATGATAATTGTGATCGTAAATCAGCAAACTATTTAAATAGAGTTGTG
* * * *
8407666 ATCATAAATCTG-TGAACTTTTCATGAATTATTCATGATTGTAAGCAGTTATCATAAATCAACGA
131 ATCATAAATC-GATGAACTCTTAATGAATTATTCATGA-T-T-A-CAG---T--TAAACCAAAGA
* * * * *
8407730 GCTTTAAAAATGACAGTTGTAATCGTAAATTAGCAAACTGTTTAAATGGAGTTGTGATCA
186 GCTTTAAAAATGACAATTGTAATCGTAAATCAACAAACTATTTAAATGGAGTTGCGATCA
* * * *
8407790 TAAATCAACGAACTCTTAATGAATTGTTCATGATCATAAATCAATGAAT-TGAAGTTGTAATCGT
1 TAAATCAACAAACTCTTAATGAATTGTTCATGATCATAAATCAAT-AATCTAAAGCTGTGATCGT
* * * *
8407854 AAATCGGCAAGCTTTAAAAATGACAATTATGATCGTAAATCAGCAAACTATTTAAATAGAGTTGC
65 AAATCAGCAAGCTTTAAAAATGATAATTGTGATCGTAAATCAGCAAACTATTTAAATAGAGTTGT
*
8407919 AATCATAAA
130 GATCATAAA
8407928 CTGACAAACT
Statistics
Matches: 323, Mismatches: 52, Indels: 21
0.82 0.13 0.05
Matches are distributed among these distances:
241 140 0.43
242 2 0.01
244 1 0.00
247 1 0.00
248 1 0.00
254 177 0.55
255 1 0.00
ACGTcount: A:0.39, C:0.13, G:0.15, T:0.33
Consensus pattern (245 bp):
TAAATCAACAAACTCTTAATGAATTGTTCATGATCATAAATCAATAATCTAAAGCTGTGATCGTA
AATCAGCAAGCTTTAAAAATGATAATTGTGATCGTAAATCAGCAAACTATTTAAATAGAGTTGTG
ATCATAAATCGATGAACTCTTAATGAATTATTCATGATTACAGTTAAACCAAAGAGCTTTAAAAA
TGACAATTGTAATCGTAAATCAACAAACTATTTAAATGGAGTTGCGATCA
Found at i:8407812 original size:120 final size:120
Alignment explanation
Indices: 8407599--8407823 Score: 333
Period size: 120 Copynumber: 1.9 Consensus size: 120
8407589 GCTGTGATCG
* *
8407599 TAAATCAACGAGCTTTAAAAATGATAACTGTGATCGTAAATCAGCAAACTATTTAAATAGAGTTG
1 TAAATCAACGAGCTTTAAAAATGACAACTGTAATCGTAAATCAGCAAACTATTTAAATAGAGTTG
*** * *
8407664 TGATCATAAATCTGTGAACTTTTCATGAATTATTCATGATTGTAAGCAGTTATCA
66 TGATCATAAATCAACGAACTCTTAATGAATTATTCATGATTGTAAGCAGTTATCA
** * * *
8407719 TAAATCAACGAGCTTTAAAAATGACAGTTGTAATCGTAAATTAGCAAACTGTTTAAATGGAGTTG
1 TAAATCAACGAGCTTTAAAAATGACAACTGTAATCGTAAATCAGCAAACTATTTAAATAGAGTTG
*
8407784 TGATCATAAATCAACGAACTCTTAATGAATTGTTCATGAT
66 TGATCATAAATCAACGAACTCTTAATGAATTATTCATGAT
8407824 CATAAATCAA
Statistics
Matches: 92, Mismatches: 13, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
120 92 1.00
ACGTcount: A:0.39, C:0.12, G:0.16, T:0.33
Consensus pattern (120 bp):
TAAATCAACGAGCTTTAAAAATGACAACTGTAATCGTAAATCAGCAAACTATTTAAATAGAGTTG
TGATCATAAATCAACGAACTCTTAATGAATTATTCATGATTGTAAGCAGTTATCA
Found at i:8407927 original size:254 final size:241
Alignment explanation
Indices: 8407279--8408037 Score: 668
Period size: 241 Copynumber: 3.1 Consensus size: 241
8407269 GGACCTTGAG
* ** ** * **
8407279 AATGGAGTTATGATTGTAAATCAGGAAACTCTTAATGAATTGTTCAGGATTGTAAATCAATGAA-
1 AATGGAGTTGTGATCATAAATCAACAAACTCTTAATGAATTGTTCATGATCATAAATCAAT-AAT
* * * * * ** * *
8407343 CTAAAACTGTGATCATAAATCAGCAAGCTTTAAAAATGTCAGTTGTGATCGTAAATCAACAAACT
65 CTAAAGCTGTAATCGTAAATCAACAAGCTTTAAAAATGACAACTATGATCGTAAATCAGCAAACT
* * *** * ** ** * *
8407408 ATTTAAATGGATTTATGATCGTAAA-TCGATGAACTCT-T-AA-TGAATTTTTCATGATCGTAAA
130 ATTTAAATAGAGTTGCAATCATAAACT-GACAAACTCTATCAACT-AA-AGTT-GTGATCATAAA
* * * * * * * * * *
8407469 CCAAAGAGTTTTAAAAATGAGAATTTTGATCGTAAATCAACGAACTATTTA
191 TCAACGAGCTTTAAAAATGACAGTTGTGATCGTAAATTAGCAAACTGTTTA
* * * * * **
8407520 AATGGTGTTGCGATCGTAAATCGATAAACTCTTAATGAATTGTTCATGATCATAAATCAATTTTC
1 AATGGAGTTGTGATCATAAATCAACAAACTCTTAATGAATTGTTCATGATCATAAATCAATAATC
* * * *
8407585 TAAAGCTGTGATCGTAAATCAACGAGCTTTAAAAATGATAACTGTGATCGTAAATCAGCAAACTA
66 TAAAGCTGTAATCGTAAATCAACAAGCTTTAAAAATGACAACTATGATCGTAAATCAGCAAACTA
** ** * * * *
8407650 TTTAAATAGAGTTGTGATCATAAATCTG-TGAACTTTTCATGAATTATTCATGATTGTAAGCAGT
131 TTTAAATAGAGTTGCAATCATAAA-CTGACAAAC-TCT-ATCAACTA---AAG-TTGT-----G-
*
8407714 TATCATAAATCAACGAGCTTTAAAAATGACAGTTGTAATCGTAAATTAGCAAACTGTTTA
183 -ATCATAAATCAACGAGCTTTAAAAATGACAGTTGTGATCGTAAATTAGCAAACTGTTTA
*
8407774 AATGGAGTTGTGATCATAAATCAACGAACTCTTAATGAATTGTTCATGATCATAAATCAATGAAT
1 AATGGAGTTGTGATCATAAATCAACAAACTCTTAATGAATTGTTCATGATCATAAATCAAT-AAT
* * ** *
8407839 -TGAAGTTGTAATCGTAAATCGGCAAGCTTTAAAAATGACAATTATGATCGTAAATCAGCAAACT
65 CTAAAGCTGTAATCGTAAATCAACAAGCTTTAAAAATGACAACTATGATCGTAAATCAGCAAACT
*
8407903 ATTTAAATAGAGTTGCAATCATAAACTGACAAACTCTATCAACTAAAGTTGTGATCGTAAATCAA
130 ATTTAAATAGAGTTGCAATCATAAACTGACAAACTCTATCAACTAAAGTTGTGATCATAAATCAA
* *
8407968 CGAGCTTTAAAAATGACAGTTGTGGTCGTAAATTAGCAAAATGTTTA
195 CGAGCTTTAAAAATGACAGTTGTGATCGTAAATTAGCAAACTGTTTA
*
8408015 AATGAAGTTGTGATCATAAATCA
1 AATGGAGTTGTGATCATAAATCA
8408038 GCGAGCGTTG
Statistics
Matches: 427, Mismatches: 70, Indels: 42
0.79 0.13 0.08
Matches are distributed among these distances:
241 210 0.49
242 3 0.01
243 2 0.00
244 1 0.00
245 3 0.01
246 1 0.00
247 2 0.00
248 7 0.02
249 2 0.00
252 7 0.02
253 5 0.01
254 183 0.43
255 1 0.00
ACGTcount: A:0.39, C:0.13, G:0.16, T:0.32
Consensus pattern (241 bp):
AATGGAGTTGTGATCATAAATCAACAAACTCTTAATGAATTGTTCATGATCATAAATCAATAATC
TAAAGCTGTAATCGTAAATCAACAAGCTTTAAAAATGACAACTATGATCGTAAATCAGCAAACTA
TTTAAATAGAGTTGCAATCATAAACTGACAAACTCTATCAACTAAAGTTGTGATCATAAATCAAC
GAGCTTTAAAAATGACAGTTGTGATCGTAAATTAGCAAACTGTTTA
Found at i:8408031 original size:107 final size:107
Alignment explanation
Indices: 8407841--8408034 Score: 264
Period size: 107 Copynumber: 1.8 Consensus size: 107
8407831 CAATGAATTG
** *
8407841 AAGTTGTAATCGTAAATCGGCAAGCTTTAAAAATGACAATTATGATCGTAAATCAGCAAACTATT
1 AAGTTGTAATCGTAAATCAACAAGCTTTAAAAATGACAATTATGATCGTAAATCAGCAAAATATT
8407906 TAAATAGAGTTGCAATCATAAACTGACAAACTCTATCAACTA
66 TAAATAGAGTTGCAATCATAAACTGACAAACTCTATCAACTA
* * * * * * *
8407948 AAGTTGTGATCGTAAATCAACGAGCTTTAAAAATGACAGTTGTGGTCGTAAATTAGCAAAATGTT
1 AAGTTGTAATCGTAAATCAACAAGCTTTAAAAATGACAATTATGATCGTAAATCAGCAAAATATT
**
8408013 TAAAT-GAAGTTGTGATCATAAA
66 TAAATAG-AGTTGCAATCATAAA
8408035 TCAGCGAGCG
Statistics
Matches: 74, Mismatches: 12, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
106 1 0.01
107 73 0.99
ACGTcount: A:0.41, C:0.13, G:0.16, T:0.29
Consensus pattern (107 bp):
AAGTTGTAATCGTAAATCAACAAGCTTTAAAAATGACAATTATGATCGTAAATCAGCAAAATATT
TAAATAGAGTTGCAATCATAAACTGACAAACTCTATCAACTA
Found at i:8408053 original size:35 final size:35
Alignment explanation
Indices: 8407949--8408071 Score: 122
Period size: 36 Copynumber: 3.5 Consensus size: 35
8407939 TATCAACTAA
* *
8407949 AGTTGTGATCGTAAATCAACGAGCTTTAAAAATGAC
1 AGTTGTGATCGTAAATCAGCGAGCGTT-AAAATGAC
* * * ** *
8407985 AGTTGTGGTCGTAAATTAGCAAAATGTTTAAATGA-
1 AGTTGTGATCGTAAATCAGC-GAGCGTTAAAATGAC
* *
8408020 AGTTGTGATCATAAATCAGCGAGCGTTGAAAATGAT
1 AGTTGTGATCGTAAATCAGCGAGCGTT-AAAATGAC
8408056 AGTTGTGATCGTAAAT
1 AGTTGTGATCGTAAAT
8408072 TGGCGAACTA
Statistics
Matches: 68, Mismatches: 16, Indels: 6
0.76 0.18 0.07
Matches are distributed among these distances:
34 4 0.06
35 23 0.34
36 38 0.56
37 3 0.04
ACGTcount: A:0.37, C:0.10, G:0.23, T:0.31
Consensus pattern (35 bp):
AGTTGTGATCGTAAATCAGCGAGCGTTAAAATGAC
Found at i:8408087 original size:71 final size:71
Alignment explanation
Indices: 8407948--8408087 Score: 181
Period size: 71 Copynumber: 2.0 Consensus size: 71
8407938 CTATCAACTA
* * * **
8407948 AAGTTGTGATCGTAAATCAACGAGCTTTAAAAATGACAGTTGTGGTCGTAAATTAGCAAAATGTT
1 AAGTTGTGATCATAAATCAACGAGCGTTAAAAATGACAGTTGTGATCGTAAATTAGCAAAATACT
8408013 TAAATG
66 TAAATG
* * * * * *
8408019 AAGTTGTGATCATAAATCAGCGAGCGTTGAAAATGATAGTTGTGATCGTAAATTGGCGAACTACT
1 AAGTTGTGATCATAAATCAACGAGCGTTAAAAATGACAGTTGTGATCGTAAATTAGCAAAATACT
8408084 TAAA
66 TAAA
8408088 CGGAATTACA
Statistics
Matches: 58, Mismatches: 11, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
71 58 1.00
ACGTcount: A:0.37, C:0.11, G:0.22, T:0.30
Consensus pattern (71 bp):
AAGTTGTGATCATAAATCAACGAGCGTTAAAAATGACAGTTGTGATCGTAAATTAGCAAAATACT
TAAATG
Found at i:8414859 original size:33 final size:33
Alignment explanation
Indices: 8414817--8414915 Score: 153
Period size: 33 Copynumber: 3.0 Consensus size: 33
8414807 GTATGAGTTA
8414817 GGGCCTTAGCCCATTCAGTAACAATATCAGTGT
1 GGGCCTTAGCCCATTCAGTAACAATATCAGTGT
* * *
8414850 GGGCCTTAGCCCATTAAGTAACAATACCAATGT
1 GGGCCTTAGCCCATTCAGTAACAATATCAGTGT
*
8414883 GGGCCTTAGCCCAATTCAGTAACAGTATCAGTG
1 GGGCCTTAGCCC-ATTCAGTAACAATATCAGTG
8414916 CAGAATATAA
Statistics
Matches: 58, Mismatches: 7, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
33 42 0.72
34 16 0.28
ACGTcount: A:0.29, C:0.24, G:0.21, T:0.25
Consensus pattern (33 bp):
GGGCCTTAGCCCATTCAGTAACAATATCAGTGT
Found at i:8437827 original size:11 final size:10
Alignment explanation
Indices: 8437811--8437836 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
8437801 TTAGAAACCT
8437811 AAAAAAAAAG
1 AAAAAAAAAG
8437821 AAAAAAAAAG
1 AAAAAAAAAG
8437831 AAAAAA
1 AAAAAA
8437837 CTTAATTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.92, C:0.00, G:0.08, T:0.00
Consensus pattern (10 bp):
AAAAAAAAAG
Found at i:8441042 original size:6 final size:6
Alignment explanation
Indices: 8441018--8441055 Score: 53
Period size: 6 Copynumber: 6.5 Consensus size: 6
8441008 TTATATTAAC
8441018 AATAT- AAT-TA AAGTATA AATATA AATATA AATATA AAT
1 AATATA AATATA AA-TATA AATATA AATATA AATATA AAT
8441056 CCCGAACTTA
Statistics
Matches: 30, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
4 1 0.03
5 5 0.17
6 20 0.67
7 4 0.13
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.34
Consensus pattern (6 bp):
AATATA
Found at i:8441960 original size:15 final size:15
Alignment explanation
Indices: 8441931--8441959 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
8441921 GCAATCTTGA
8441931 CTTTTTTTTCTTTTT
1 CTTTTTTTTCTTTTT
8441946 CTTTTTTTT-TTTTT
1 CTTTTTTTTCTTTTT
8441960 TGGTACACTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 5 0.36
15 9 0.64
ACGTcount: A:0.00, C:0.10, G:0.00, T:0.90
Consensus pattern (15 bp):
CTTTTTTTTCTTTTT
Found at i:8448534 original size:34 final size:34
Alignment explanation
Indices: 8448491--8448563 Score: 146
Period size: 34 Copynumber: 2.1 Consensus size: 34
8448481 TGTAAACAGA
8448491 TAGAGACAAAACACTCGAACCCGCTGAAAACTGG
1 TAGAGACAAAACACTCGAACCCGCTGAAAACTGG
8448525 TAGAGACAAAACACTCGAACCCGCTGAAAACTGG
1 TAGAGACAAAACACTCGAACCCGCTGAAAACTGG
8448559 TAGAG
1 TAGAG
8448564 CCTATCACAA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 39 1.00
ACGTcount: A:0.41, C:0.25, G:0.22, T:0.12
Consensus pattern (34 bp):
TAGAGACAAAACACTCGAACCCGCTGAAAACTGG
Found at i:8452448 original size:30 final size:31
Alignment explanation
Indices: 8452414--8452477 Score: 96
Period size: 31 Copynumber: 2.1 Consensus size: 31
8452404 ATTTATTTTA
*
8452414 TTGTTAA-TTTTCTTATTATTTTA-AAGGCAT
1 TTGTTAATTTTTATTATTATTTTAGAA-GCAT
8452444 TTGTTAATTTTTATTATTATTTTAGAAGCAT
1 TTGTTAATTTTTATTATTATTTTAGAAGCAT
8452475 TTG
1 TTG
8452478 CTTGTTAAGT
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
30 7 0.23
31 22 0.71
32 2 0.06
ACGTcount: A:0.27, C:0.05, G:0.11, T:0.58
Consensus pattern (31 bp):
TTGTTAATTTTTATTATTATTTTAGAAGCAT
Found at i:8452919 original size:32 final size:30
Alignment explanation
Indices: 8452878--8452947 Score: 86
Period size: 32 Copynumber: 2.3 Consensus size: 30
8452868 TTTATTCTAA
* **
8452878 ATATTATTATTTCTTAGCATGTAAAATTTAT
1 ATATAATTATTTCTTAAAATGTAAAA-TTAT
*
8452909 ATATGAATTATTTTTTAAAATGTAAAATTAT
1 ATAT-AATTATTTCTTAAAATGTAAAATTAT
8452940 ATATAATT
1 ATATAATT
8452948 TATTATTTTT
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
30 4 0.12
31 12 0.35
32 18 0.53
ACGTcount: A:0.41, C:0.03, G:0.06, T:0.50
Consensus pattern (30 bp):
ATATAATTATTTCTTAAAATGTAAAATTAT
Found at i:8452943 original size:31 final size:33
Alignment explanation
Indices: 8452896--8452956 Score: 92
Period size: 31 Copynumber: 1.9 Consensus size: 33
8452886 ATTTCTTAGC
8452896 ATGTAAAATTTATATATGAA-TTATT-TTTTAAA
1 ATGTAAAATTTATATAT-AATTTATTATTTTAAA
8452928 ATGTAAAA-TTATATATAATTTATTATTTT
1 ATGTAAAATTTATATATAATTTATTATTTT
8452957 TTCATATGTG
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
30 2 0.07
31 13 0.48
32 12 0.44
ACGTcount: A:0.43, C:0.00, G:0.05, T:0.52
Consensus pattern (33 bp):
ATGTAAAATTTATATATAATTTATTATTTTAAA
Found at i:8453241 original size:22 final size:23
Alignment explanation
Indices: 8453210--8453253 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 23
8453200 TATTTTCTAA
* *
8453210 TATATAAATATTTATTTTATATT
1 TATATAAATATGTAATTTATATT
8453233 TATAT-AATATGTAATTTATAT
1 TATATAAATATGTAATTTATAT
8453254 AAAATAAAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 14 0.74
23 5 0.26
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.57
Consensus pattern (23 bp):
TATATAAATATGTAATTTATATT
Found at i:8454896 original size:27 final size:27
Alignment explanation
Indices: 8454854--8454910 Score: 98
Period size: 27 Copynumber: 2.1 Consensus size: 27
8454844 ATAAATAAAA
8454854 AAACAAAAAAAAAAATTTCTTCTAC-T
1 AAACAAAAAAAAAAATTTCTTCTACAT
8454880 AAACAAAAATAAAAAATTTCTTCTACAT
1 AAACAAAAA-AAAAAATTTCTTCTACAT
8454908 AAA
1 AAA
8454911 ATAGATCGTC
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
26 9 0.31
27 16 0.55
28 4 0.14
ACGTcount: A:0.60, C:0.14, G:0.00, T:0.26
Consensus pattern (27 bp):
AAACAAAAAAAAAAATTTCTTCTACAT
Found at i:8455419 original size:22 final size:22
Alignment explanation
Indices: 8455376--8455419 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
8455366 TACAGGGCTC
**
8455376 ACACGCCCGTGTGGTCCAAGGA
1 ACACGCCCGTGTGACCCAAGGA
* *
8455398 ACACGCCTGTGTGACCCTAGGA
1 ACACGCCCGTGTGACCCAAGGA
8455420 CATGCCAGTG
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.23, C:0.32, G:0.30, T:0.16
Consensus pattern (22 bp):
ACACGCCCGTGTGACCCAAGGA
Found at i:8457751 original size:20 final size:20
Alignment explanation
Indices: 8457718--8457758 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
8457708 ACGTCACGTA
*
8457718 TTCATAAAAATTCAGAATTT
1 TTCATAAAAATTCACAATTT
* *
8457738 TTCATCAAATTTCACAATTT
1 TTCATAAAAATTCACAATTT
8457758 T
1 T
8457759 GCATTTTAGT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.39, C:0.15, G:0.02, T:0.44
Consensus pattern (20 bp):
TTCATAAAAATTCACAATTT
Found at i:8458107 original size:15 final size:17
Alignment explanation
Indices: 8458070--8458107 Score: 55
Period size: 16 Copynumber: 2.4 Consensus size: 17
8458060 ATTATTTTCT
8458070 TTTTCATTTAATTAAAC
1 TTTTCATTTAATTAAAC
8458087 -TTTCATTTAA-T-AAC
1 TTTTCATTTAATTAAAC
8458101 TTTTCAT
1 TTTTCAT
8458108 CTTTCCAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
14 3 0.15
15 7 0.35
16 10 0.50
ACGTcount: A:0.32, C:0.13, G:0.00, T:0.55
Consensus pattern (17 bp):
TTTTCATTTAATTAAAC
Found at i:8462960 original size:43 final size:43
Alignment explanation
Indices: 8462897--8463224 Score: 271
Period size: 43 Copynumber: 7.7 Consensus size: 43
8462887 TGGTATTGAT
8462897 CTGAATTATCGTGTAAGACCATGTCTGGGACACAGGCATCGATA
1 CTGAATTA-CGTGTAAGACCATGTCTGGGACACAGGCATCGATA
* * * *
8462941 CTGAATTACGTGTATGACCATGTCTAGAACATC-GACATCG-TA
1 CTGAATTACGTGTAAGACCATGTCTGGGACA-CAGGCATCGATA
* * ** * * *
8462983 TCT-ATTTTCGTAAAAAACCATGTCTGGGACAGAGGCAACGATA
1 -CTGAATTACGTGTAAGACCATGTCTGGGACACAGGCATCGATA
*
8463026 CTAAATTACGTGTAAGACCATGTCTGGGACATCA-GCATCG-TA
1 CTGAATTACGTGTAAGACCATGTCTGGGACA-CAGGCATCGATA
* ** * * *
8463068 TCT--ATTTCGTAAAAGACCCTGTCTGGGACAGAGGCAACGATA
1 -CTGAATTACGTGTAAGACCATGTCTGGGACACAGGCATCGATA
* *
8463110 TTGAATTACGTGTAAGACCATGTCTGGGACATC-GGCATC-ATGT
1 CTGAATTACGTGTAAGACCATGTCTGGGACA-CAGGCATCGAT-A
* * * * * *
8463153 CTG-TTTTCGTATAAGACCTTGTTTGGGACAAAGGCATCGATA
1 CTGAATTACGTGTAAGACCATGTCTGGGACACAGGCATCGATA
* *
8463195 CTGAATTACATGTAAGACCACGTCTGGGAC
1 CTGAATTACGTGTAAGACCATGTCTGGGAC
8463225 GTCGACATTA
Statistics
Matches: 217, Mismatches: 51, Indels: 33
0.72 0.17 0.11
Matches are distributed among these distances:
40 1 0.00
41 29 0.13
42 66 0.30
43 111 0.51
44 10 0.05
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.27
Consensus pattern (43 bp):
CTGAATTACGTGTAAGACCATGTCTGGGACACAGGCATCGATA
Found at i:8463058 original size:85 final size:85
Alignment explanation
Indices: 8462911--8463232 Score: 432
Period size: 85 Copynumber: 3.8 Consensus size: 85
8462901 ATTATCGTGT
* * * * *
8462911 AAGACCATGTCTGGGACACAGGCATCGATACTGAATTACGTGTATGACCATGTCTAGAACATCGA
1 AAGACCATGTCTGGGACAGAGGCAACGATACTGAATTACGTGTAAGACCATGTCTGGGACATCGA
8462976 CATCGTATCTATTTTCGTAA
66 CATCGTATCTATTTTCGTAA
* *
8462996 AAAACCATGTCTGGGACAGAGGCAACGATACTAAATTACGTGTAAGACCATGTCTGGGACATC-A
1 AAGACCATGTCTGGGACAGAGGCAACGATACTGAATTACGTGTAAGACCATGTCTGGGACATCGA
8463060 GCATCGTATCTA-TTTCGTAA
66 -CATCGTATCTATTTTCGTAA
* * *
8463080 AAGACCCTGTCTGGGACAGAGGCAACGATATTGAATTACGTGTAAGACCATGTCTGGGACATCGG
1 AAGACCATGTCTGGGACAGAGGCAACGATACTGAATTACGTGTAAGACCATGTCTGGGACATCGA
* * * *
8463145 CATCATGTCTGTTTTCGTAT
66 CATCGTATCTATTTTCGTAA
* * * * * * *
8463165 AAGACCTTGTTTGGGACAAAGGCATCGATACTGAATTACATGTAAGACCACGTCTGGGACGTCGA
1 AAGACCATGTCTGGGACAGAGGCAACGATACTGAATTACGTGTAAGACCATGTCTGGGACATCGA
8463230 CAT
66 CAT
8463233 TATACTTTTC
Statistics
Matches: 209, Mismatches: 25, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
84 76 0.36
85 133 0.64
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.26
Consensus pattern (85 bp):
AAGACCATGTCTGGGACAGAGGCAACGATACTGAATTACGTGTAAGACCATGTCTGGGACATCGA
CATCGTATCTATTTTCGTAA
Found at i:8463211 original size:169 final size:169
Alignment explanation
Indices: 8462911--8463224 Score: 448
Period size: 169 Copynumber: 1.9 Consensus size: 169
8462901 ATTATCGTGT
* *
8462911 AAGACCATGTCTGGGACACAGGCATCGATACTGAATTACGTGTATGACCATGTCTAGAACATCGA
1 AAGACCATGTCTGGGACACAGGCAACGATACTGAATTACGTGTAAGACCATGTCTAGAACATCGA
* * *
8462976 CATCGTATCTATTTTCGTAAAAAACCATGTCTGGGACAGAGGCAACGATACTAAATTACGTGTAA
66 CATCATATCTATTTTCGTAAAAAACCATGTCTGGGACAAAGGCAACGATACTAAATTACATGTAA
*
8463041 GACCATGTCTGGGACATCAGCATCGTATCTATTTCGTAA
131 GACCACGTCTGGGACATCAGCATCGTATCTATTTCGTAA
* * * * * *
8463080 AAGACCCTGTCTGGGACAGAGGCAACGATATTGAATTACGTGTAAGACCATGTCTGGGACATCGG
1 AAGACCATGTCTGGGACACAGGCAACGATACTGAATTACGTGTAAGACCATGTCTAGAACATCGA
* * * * * * * *
8463145 CATCATGTCTGTTTTCGTATAAGACCTTGTTTGGGACAAAGGCATCGATACTGAATTACATGTAA
66 CATCATATCTATTTTCGTAAAAAACCATGTCTGGGACAAAGGCAACGATACTAAATTACATGTAA
8463210 GACCACGTCTGGGAC
131 GACCACGTCTGGGAC
8463225 GTCGACATTA
Statistics
Matches: 125, Mismatches: 20, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
169 125 1.00
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.26
Consensus pattern (169 bp):
AAGACCATGTCTGGGACACAGGCAACGATACTGAATTACGTGTAAGACCATGTCTAGAACATCGA
CATCATATCTATTTTCGTAAAAAACCATGTCTGGGACAAAGGCAACGATACTAAATTACATGTAA
GACCACGTCTGGGACATCAGCATCGTATCTATTTCGTAA
Found at i:8463766 original size:12 final size:13
Alignment explanation
Indices: 8463749--8463780 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
8463739 GCAAATGTTA
8463749 AGTTTTG-TGCAT
1 AGTTTTGATGCAT
8463761 AGTTTTGATGCAT
1 AGTTTTGATGCAT
8463774 -GTTTTGA
1 AGTTTTGA
8463781 AATGTTTTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 14 0.74
13 5 0.26
ACGTcount: A:0.19, C:0.06, G:0.25, T:0.50
Consensus pattern (13 bp):
AGTTTTGATGCAT
Found at i:8464160 original size:20 final size:20
Alignment explanation
Indices: 8464140--8464176 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
8464130 TCAGTTTTGA
*
8464140 AAAG-TTTGATTAAGTTCTG
1 AAAGTTTTGAATAAGTTCTG
8464159 AAAGTTTTGAATAAGTTC
1 AAAGTTTTGAATAAGTTC
8464177 GGTTTAATCC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
19 4 0.25
20 12 0.75
ACGTcount: A:0.35, C:0.05, G:0.19, T:0.41
Consensus pattern (20 bp):
AAAGTTTTGAATAAGTTCTG
Found at i:8471634 original size:54 final size:53
Alignment explanation
Indices: 8471552--8471791 Score: 268
Period size: 54 Copynumber: 4.5 Consensus size: 53
8471542 AAAACCTCGG
* * * *
8471552 TTTGTAAAATTACCGGAATAACCTCAAATTGTAAAATTATCGAAATACACTCAA
1 TTTGTAAAATTACTGAAATACCCTCAAATTGTAAAATTATC-AAATACCCTCAA
*
8471606 TTTGTAAAATTACTGAAATACCCTCAAATTGTAAAATTATCAATATACCCTCAG
1 TTTGTAAAATTACTGAAATACCCTCAAATTGTAAAATTATCAA-ATACCCTCAA
* * * * * *
8471660 TTTGTAAAATTACCGAAATACCTTCGATTTGTAAAATTACCAAAATACCCTTAGA
1 TTTGTAAAATTACTGAAATACCCTCAAATTGTAAAATTATC-AAATACCCTCA-A
** *
8471715 -TTGTAAAATTACTGAAATACCCTCAGTTTGTAAAATTATCAAAGTACCCT-TA
1 TTTGTAAAATTACTGAAATACCCTCAAATTGTAAAATTATCAAA-TACCCTCAA
* *
8471767 TAGTGTAAAATTACTAAAATACCCT
1 T-TTGTAAAATTACTGAAATACCCT
8471792 TGTAGGGTAA
Statistics
Matches: 160, Mismatches: 20, Indels: 12
0.83 0.10 0.06
Matches are distributed among these distances:
52 1 0.01
53 5 0.03
54 152 0.95
55 2 0.01
ACGTcount: A:0.41, C:0.17, G:0.09, T:0.33
Consensus pattern (53 bp):
TTTGTAAAATTACTGAAATACCCTCAAATTGTAAAATTATCAAATACCCTCAA
Found at i:8471762 original size:27 final size:26
Alignment explanation
Indices: 8471546--8471791 Score: 199
Period size: 27 Copynumber: 9.1 Consensus size: 26
8471536 GTCGTTAAAA
* * * *
8471546 CCTCGGTTTGTAAAATTACCGGAATAA
1 CCTCAGTTTGTAAAATTATC-AAATAC
**
8471573 CCTCAAATTGTAAAATTATCGAAATAC
1 CCTCAGTTTGTAAAATTATC-AAATAC
* * *
8471600 ACTCAATTTGTAAAATTACTGAAATAC
1 CCTCAGTTTGTAAAATTA-TCAAATAC
**
8471627 CCTCAAATTGTAAAATTATCAATATAC
1 CCTCAGTTTGTAAAATTATCAA-ATAC
*
8471654 CCTCAGTTTGTAAAATTACCGAAATAC
1 CCTCAGTTTGTAAAATTATC-AAATAC
* *
8471681 CTTC-GATTTGTAAAATTACCAAAATAC
1 CCTCAG-TTTGTAAAATTATC-AAATAC
* * *
8471708 CCTTAGATTGTAAAATTACTGAAATAC
1 CCTCAGTTTGTAAAATTA-TCAAATAC
8471735 CCTCAGTTTGTAAAATTATCAAAGTAC
1 CCTCAGTTTGTAAAATTATCAAA-TAC
* * *
8471762 CCTTA-TAGTGTAAAATTACTAAAATAC
1 CCTCAGT-TTGTAAAATTA-TCAAATAC
8471789 CCT
1 CCT
8471792 TGTAGGGTAA
Statistics
Matches: 182, Mismatches: 28, Indels: 18
0.80 0.12 0.08
Matches are distributed among these distances:
26 9 0.05
27 165 0.91
28 8 0.04
ACGTcount: A:0.40, C:0.18, G:0.09, T:0.32
Consensus pattern (26 bp):
CCTCAGTTTGTAAAATTATCAAATAC
Found at i:8471792 original size:81 final size:81
Alignment explanation
Indices: 8471553--8471792 Score: 274
Period size: 81 Copynumber: 3.0 Consensus size: 81
8471543 AAACCTCGGT
* * * ** * *
8471553 TTGTAAAATTACCGGAATAACCTCAAATTGTAAAATTATCGAAATACACTCA-ATTTGTAAAATT
1 TTGTAAAATTACTGAAATACCCTCAGTTTGTAAAATTATCGAAATACCCTTATA-TTGTAAAATT
* *
8471617 ACTGAAATACCCTCAAA
65 ACTAAAATACCCTTAAA
* *
8471634 TTGTAAAATTA-TCAATATACCCTCAGTTTGTAAAATTACCGAAATA-CCTTCGAT-TTGTAAAA
1 TTGTAAAATTACTGAA-ATACCCTCAGTTTGTAAAATTATCGAAATACCCTT--ATATTGTAAAA
* *
8471696 TTACCAAAATACCCTTAGA
63 TTACTAAAATACCCTTAAA
*
8471715 TTGTAAAATTACTGAAATACCCTCAGTTTGTAAAATTATC-AAAGTACCCTTATAGTGTAAAATT
1 TTGTAAAATTACTGAAATACCCTCAGTTTGTAAAATTATCGAAA-TACCCTTATATTGTAAAATT
8471779 ACTAAAATACCCTT
65 ACTAAAATACCCTT
8471793 GTAGGGTAAA
Statistics
Matches: 134, Mismatches: 17, Indels: 16
0.80 0.10 0.10
Matches are distributed among these distances:
80 8 0.06
81 118 0.88
82 8 0.06
ACGTcount: A:0.41, C:0.17, G:0.09, T:0.33
Consensus pattern (81 bp):
TTGTAAAATTACTGAAATACCCTCAGTTTGTAAAATTATCGAAATACCCTTATATTGTAAAATTA
CTAAAATACCCTTAAA
Found at i:8471801 original size:27 final size:27
Alignment explanation
Indices: 8471689--8471809 Score: 113
Period size: 27 Copynumber: 4.5 Consensus size: 27
8471679 ACCTTCGATT
* *
8471689 TGTAAAATTACCAAAATACCCTTAG-AT
1 TGTAAAATTACTAAAATACCCTT-GTAG
* * *
8471716 TGTAAAATTACTGAAATACCCTCAGT-T
1 TGTAAAATTACTAAAATACCCT-TGTAG
* *
8471743 TGTAAAATTA-TCAAAGTACCCTTATAG
1 TGTAAAATTACT-AAAATACCCTTGTAG
8471770 TGTAAAATTACTAAAATACCCTTGTAG
1 TGTAAAATTACTAAAATACCCTTGTAG
* *
8471797 GGTAAAATGACTA
1 TGTAAAATTACTA
8471810 TTTTGCCCTT
Statistics
Matches: 77, Mismatches: 12, Indels: 10
0.78 0.12 0.10
Matches are distributed among these distances:
26 2 0.03
27 74 0.96
28 1 0.01
ACGTcount: A:0.41, C:0.16, G:0.12, T:0.31
Consensus pattern (27 bp):
TGTAAAATTACTAAAATACCCTTGTAG
Found at i:8472199 original size:22 final size:22
Alignment explanation
Indices: 8472168--8472222 Score: 101
Period size: 22 Copynumber: 2.5 Consensus size: 22
8472158 TTTGATTATA
8472168 GCTCTGTGCCAGCATAAAAATG
1 GCTCTGTGCCAGCATAAAAATG
*
8472190 GCTCTATGCCAGCATAAAAATG
1 GCTCTGTGCCAGCATAAAAATG
8472212 GCTCTGTGCCA
1 GCTCTGTGCCA
8472223 TCTTGACTAT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
22 31 1.00
ACGTcount: A:0.29, C:0.25, G:0.22, T:0.24
Consensus pattern (22 bp):
GCTCTGTGCCAGCATAAAAATG
Found at i:8473339 original size:15 final size:15
Alignment explanation
Indices: 8473321--8473350 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
8473311 CATTTAGTGG
8473321 TATCAGAGTTAGGTT
1 TATCAGAGTTAGGTT
8473336 TATCAGAGTTAGGTT
1 TATCAGAGTTAGGTT
8473351 ACAAAACTCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.27, C:0.07, G:0.27, T:0.40
Consensus pattern (15 bp):
TATCAGAGTTAGGTT
Found at i:8475562 original size:14 final size:14
Alignment explanation
Indices: 8475545--8475573 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
8475535 TGTCGTTGGG
8475545 ACTGTGACGTTTAC
1 ACTGTGACGTTTAC
8475559 ACTGTGACGTTTAC
1 ACTGTGACGTTTAC
8475573 A
1 A
8475574 TAGCTGTGGC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.24, C:0.21, G:0.21, T:0.34
Consensus pattern (14 bp):
ACTGTGACGTTTAC
Found at i:8475764 original size:27 final size:27
Alignment explanation
Indices: 8475733--8475915 Score: 196
Period size: 27 Copynumber: 6.8 Consensus size: 27
8475723 AGACCTCAAT
8475733 TTGTAAAATTACTGAAATACCCTCGAA
1 TTGTAAAATTACTGAAATACCCTCGAA
8475760 TTGTAAAATTACTGAAATACCCTC-AA
1 TTGTAAAATTACTGAAATACCCTCGAA
* * *
8475786 TTTATAAAATTA-TCGAAATACTC-CGAT
1 -TTGTAAAATTACT-GAAATACCCTCGAA
* *
8475813 TTGTAAAATTA-TCAAAATACCCTCGAT
1 TTGTAAAATTACT-GAAATACCCTCGAA
* *
8475840 TTTTAAAATTACTGAAATACCCTCAAA
1 TTGTAAAATTACTGAAATACCCTCGAA
* *
8475867 TTGTAAAATTA-TCGAAATACCCTTGTA
1 TTGTAAAATTACT-GAAATACCCTCGAA
* *
8475894 GTGTAAAATTACCGAAATACCC
1 TTGTAAAATTACTGAAATACCC
8475916 CTGTAGGGTA
Statistics
Matches: 133, Mismatches: 16, Indels: 14
0.82 0.10 0.09
Matches are distributed among these distances:
26 24 0.18
27 108 0.81
28 1 0.01
ACGTcount: A:0.41, C:0.18, G:0.09, T:0.32
Consensus pattern (27 bp):
TTGTAAAATTACTGAAATACCCTCGAA
Found at i:8475864 original size:80 final size:80
Alignment explanation
Indices: 8475731--8475886 Score: 251
Period size: 80 Copynumber: 1.9 Consensus size: 80
8475721 TAAGACCTCA
* *
8475731 ATTTGTAAAATTACTGAAATACCCTCGAATTGTAAAATTACTGAAATACCCTCAATTTATAAAAT
1 ATTTGTAAAATTACTAAAATACCCTCGAATTGTAAAATTACTGAAATACCCTCAAATTATAAAAT
8475796 TATCGAAATACTCCG
66 TATCGAAATACTCCG
* * *
8475811 ATTTGTAAAATTA-TCAAAATACCCTCGATTTTTAAAATTACTGAAATACCCTCAAATTGTAAAA
1 ATTTGTAAAATTACT-AAAATACCCTCGAATTGTAAAATTACTGAAATACCCTCAAATTATAAAA
8475875 TTATCGAAATAC
65 TTATCGAAATAC
8475887 CCTTGTAGTG
Statistics
Matches: 70, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
79 1 0.01
80 69 0.99
ACGTcount: A:0.42, C:0.17, G:0.08, T:0.33
Consensus pattern (80 bp):
ATTTGTAAAATTACTAAAATACCCTCGAATTGTAAAATTACTGAAATACCCTCAAATTATAAAAT
TATCGAAATACTCCG
Found at i:8475920 original size:27 final size:27
Alignment explanation
Indices: 8475868--8475929 Score: 97
Period size: 27 Copynumber: 2.3 Consensus size: 27
8475858 ACCCTCAAAT
* *
8475868 TGTAAAATTATCGAAATACCCTTGTAG
1 TGTAAAATTACCGAAATACCCCTGTAG
8475895 TGTAAAATTACCGAAATACCCCTGTAG
1 TGTAAAATTACCGAAATACCCCTGTAG
*
8475922 GGTAAAAT
1 TGTAAAAT
8475930 GATTATTTTG
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.39, C:0.16, G:0.16, T:0.29
Consensus pattern (27 bp):
TGTAAAATTACCGAAATACCCCTGTAG
Found at i:8478435 original size:9 final size:9
Alignment explanation
Indices: 8478421--8478447 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
8478411 AATAGAGATA
8478421 TGACACATT
1 TGACACATT
8478430 TGACACATT
1 TGACACATT
8478439 TGACACATT
1 TGACACATT
8478448 CGGTTGGCAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.33, C:0.22, G:0.11, T:0.33
Consensus pattern (9 bp):
TGACACATT
Found at i:8479790 original size:10 final size:11
Alignment explanation
Indices: 8479765--8479797 Score: 59
Period size: 11 Copynumber: 3.1 Consensus size: 11
8479755 GCAATTTTGG
8479765 AATTAAAGTGA
1 AATTAAAGTGA
8479776 AATTAAAGT-A
1 AATTAAAGTGA
8479786 AATTAAAGTGA
1 AATTAAAGTGA
8479797 A
1 A
8479798 TAAAACAAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
10 10 0.48
11 11 0.52
ACGTcount: A:0.58, C:0.00, G:0.15, T:0.27
Consensus pattern (11 bp):
AATTAAAGTGA
Found at i:8480832 original size:75 final size:75
Alignment explanation
Indices: 8480696--8480973 Score: 432
Period size: 75 Copynumber: 3.7 Consensus size: 75
8480686 CAGCTTGTCT
* * * *
8480696 GACTAGCAC-GGGTGCAAATACCGTTGGTTTATCCAACTATAGCTAGGCTCACAATTATTATCTT
1 GACTAGCACTGGGTGCAAATATCGTTGGTTTATCCAACTAGAGCTAGGCTCACAATTGTTATCGT
8480760 CGGTTTATCC
66 CGGTTTATCC
* * * *
8480770 GACTAGCATTGGGTGCTAATATCGTTGGTTTATCCAACTAGAGTTGGGCTCACAATTGTTATCGT
1 GACTAGCACTGGGTGCAAATATCGTTGGTTTATCCAACTAGAGCTAGGCTCACAATTGTTATCGT
8480835 CGGTTTATCC
66 CGGTTTATCC
*
8480845 GACTAGCACTGGGTGCAAATATCGTTGGTTTATCCAACTAGAGCTAGGCTCATAATTGTTATCGT
1 GACTAGCACTGGGTGCAAATATCGTTGGTTTATCCAACTAGAGCTAGGCTCACAATTGTTATCGT
8480910 CGGTTTATCC
66 CGGTTTATCC
* * * *
8480920 GACTACCACTAGGTGCAAATATCGTTGGCTTATCCAACTAGAGCTGGGCTCACA
1 GACTAGCACTGGGTGCAAATATCGTTGGTTTATCCAACTAGAGCTAGGCTCACA
8480974 TTCAATATTG
Statistics
Matches: 185, Mismatches: 18, Indels: 1
0.91 0.09 0.00
Matches are distributed among these distances:
74 8 0.04
75 177 0.96
ACGTcount: A:0.24, C:0.22, G:0.22, T:0.32
Consensus pattern (75 bp):
GACTAGCACTGGGTGCAAATATCGTTGGTTTATCCAACTAGAGCTAGGCTCACAATTGTTATCGT
CGGTTTATCC
Found at i:8480844 original size:40 final size:39
Alignment explanation
Indices: 8480721--8480973 Score: 146
Period size: 35 Copynumber: 6.7 Consensus size: 39
8480711 AAATACCGTT
* * *
8480721 GGTTTATCCAACTATAGCTAGGCTCACAATTATTATCTTC
1 GGTTTATCCAACTAGAGCTGGGCTCACAATT-TTATCGTC
* * * *
8480761 GGTTTATCCGACTAGCA-TTGGG-TGC-TAA---TATCGTT
1 GGTTTATCCAACTAG-AGCTGGGCT-CACAATTTTATCGTC
*
8480796 GGTTTATCCAACTAGAGTTGGGCTCACAATTGTTATCGTC
1 GGTTTATCCAACTAGAGCTGGGCTCACAATT-TTATCGTC
* *
8480836 GGTTTATCCGACTAGCA-CTGGG-TGCA-AA---TATCGTT
1 GGTTTATCCAACTAG-AGCTGGGCT-CACAATTTTATCGTC
* *
8480871 GGTTTATCCAACTAGAGCTAGGCTCATAATTGTTATCGTC
1 GGTTTATCCAACTAGAGCTGGGCTCACAATT-TTATCGTC
* * * *
8480911 GGTTTATCCGACTACCA-CTAGG-TGCA-AA---TATCGTT
1 GGTTTATCCAACTA-GAGCTGGGCT-CACAATTTTATCGTC
*
8480946 GGCTTATCCAACTAGAGCTGGGCTCACA
1 GGTTTATCCAACTAGAGCTGGGCTCACA
8480974 TTCAATATTG
Statistics
Matches: 167, Mismatches: 23, Indels: 50
0.70 0.10 0.21
Matches are distributed among these distances:
34 3 0.02
35 75 0.45
36 8 0.05
39 9 0.05
40 69 0.41
41 3 0.02
ACGTcount: A:0.24, C:0.21, G:0.21, T:0.33
Consensus pattern (39 bp):
GGTTTATCCAACTAGAGCTGGGCTCACAATTTTATCGTC
Found at i:8481013 original size:150 final size:150
Alignment explanation
Indices: 8480696--8481013 Score: 433
Period size: 150 Copynumber: 2.1 Consensus size: 150
8480686 CAGCTTGTCT
* * *
8480696 GACTAGCAC-GGGTGCAAATACCGTTGGTTTATCCAACTATAGCTAGGCTCACAATTATTATCTT
1 GACTAGCACTGGGCGCAAATACCGTTGGTTTATCCAACTAGAGCTAGGCTCACAATTATTATCGT
* * * * * *
8480760 CGGTTTATCCGACTAGCATTGGGTGCTAATATCGTTGGTTTATCCAACTAGAGTTGGGCTCACAA
66 CGGTTTATCCGACTACCACTAGGTGCAAATATCGTTGGCTTATCCAACTAGAGCTGGGCTCACAA
** * *
8480825 TTGTTATCGTCGGTTTATCC
131 TTAATATCGTCAGTTAATCC
* * * *
8480845 GACTAGCACTGGGTGCAAATATCGTTGGTTTATCCAACTAGAGCTAGGCTCATAATTGTTATCGT
1 GACTAGCACTGGGCGCAAATACCGTTGGTTTATCCAACTAGAGCTAGGCTCACAATTATTATCGT
8480910 CGGTTTATCCGACTACCACTAGGTGCAAATATCGTTGGCTTATCCAACTAGAGCTGGGCTCAC-A
66 CGGTTTATCCGACTACCACTAGGTGCAAATATCGTTGGCTTATCCAACTAGAGCTGGGCTCACAA
*
8480974 TTCAATATTGTCAGTTAATCC
131 TT-AATATCGTCAGTTAATCC
**
8480995 GACTAGCGTTGGGCGCAAA
1 GACTAGCACTGGGCGCAAA
8481014 CTCCTCTGCG
Statistics
Matches: 148, Mismatches: 19, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
149 12 0.08
150 136 0.92
ACGTcount: A:0.25, C:0.21, G:0.22, T:0.32
Consensus pattern (150 bp):
GACTAGCACTGGGCGCAAATACCGTTGGTTTATCCAACTAGAGCTAGGCTCACAATTATTATCGT
CGGTTTATCCGACTACCACTAGGTGCAAATATCGTTGGCTTATCCAACTAGAGCTGGGCTCACAA
TTAATATCGTCAGTTAATCC
Found at i:8487364 original size:19 final size:20
Alignment explanation
Indices: 8487333--8487372 Score: 64
Period size: 19 Copynumber: 2.0 Consensus size: 20
8487323 ATTAGAGGAC
*
8487333 TTTAAATTTAATTAATTAAT
1 TTTAAATTTAATTAACTAAT
8487353 TTTAAA-TTAATTAACTAAT
1 TTTAAATTTAATTAACTAAT
8487372 T
1 T
8487373 AATCAAAATT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 13 0.68
20 6 0.32
ACGTcount: A:0.45, C:0.03, G:0.00, T:0.53
Consensus pattern (20 bp):
TTTAAATTTAATTAACTAAT
Found at i:8488882 original size:2 final size:2
Alignment explanation
Indices: 8488875--8488915 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
8488865 TTAAAGTGTT
8488875 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
8488916 TAAAATCATA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:8492928 original size:25 final size:25
Alignment explanation
Indices: 8492895--8492946 Score: 77
Period size: 25 Copynumber: 2.1 Consensus size: 25
8492885 CTAATTTCTC
* * *
8492895 CTTTCTTTCTTTCCCTTTTTCTTTT
1 CTTTCTTTCTCTCCCTGTTTCCTTT
8492920 CTTTCTTTCTCTCCCTGTTTCCTTT
1 CTTTCTTTCTCTCCCTGTTTCCTTT
8492945 CT
1 CT
8492947 ATTTTGTTTC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.00, C:0.33, G:0.02, T:0.65
Consensus pattern (25 bp):
CTTTCTTTCTCTCCCTGTTTCCTTT
Found at i:8492961 original size:15 final size:16
Alignment explanation
Indices: 8492935--8492965 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
8492925 TTTCTCTCCC
8492935 TGTTTCCTTTCTATTT
1 TGTTTCCTTTCTATTT
8492951 TGTTT-CTTTCTATTT
1 TGTTTCCTTTCTATTT
8492966 CTTTTTGTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 10 0.67
16 5 0.33
ACGTcount: A:0.06, C:0.16, G:0.06, T:0.71
Consensus pattern (16 bp):
TGTTTCCTTTCTATTT
Found at i:8492971 original size:20 final size:20
Alignment explanation
Indices: 8492942--8492984 Score: 70
Period size: 20 Copynumber: 2.1 Consensus size: 20
8492932 CCCTGTTTCC
8492942 TTTCTATTTTGTTTCTTTCTA
1 TTTCTATTTTGTTTCTTT-TA
8492963 TTTCT-TTTTGTTTCTTTTA
1 TTTCTATTTTGTTTCTTTTA
8492982 TTT
1 TTT
8492985 ATTATATTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
19 5 0.23
20 12 0.55
21 5 0.23
ACGTcount: A:0.07, C:0.12, G:0.05, T:0.77
Consensus pattern (20 bp):
TTTCTATTTTGTTTCTTTTA
Found at i:8495795 original size:29 final size:29
Alignment explanation
Indices: 8495753--8495811 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
8495743 GACTGGGAGG
8495753 TAAGTATCACTCTTTGTCTAATGAGCTGT
1 TAAGTATCACTCTTTGTCTAATGAGCTGT
8495782 TAAGTATCACTCTTTGTCTAATGAGCTGT
1 TAAGTATCACTCTTTGTCTAATGAGCTGT
8495811 T
1 T
8495812 CAAACTTGGC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.24, C:0.17, G:0.17, T:0.42
Consensus pattern (29 bp):
TAAGTATCACTCTTTGTCTAATGAGCTGT
Found at i:8500561 original size:10 final size:9
Alignment explanation
Indices: 8500549--8500593 Score: 63
Period size: 9 Copynumber: 4.9 Consensus size: 9
8500539 TAAAAATCAT
*
8500549 TAAAATATTT
1 TAAAAT-TTC
8500559 TAAAATTTC
1 TAAAATTTC
8500568 TAAAATTTC
1 TAAAATTTC
*
8500577 TAAAATTTA
1 TAAAATTTC
8500586 TAAAATTT
1 TAAAATTT
8500594 ATGAAAATAT
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
9 27 0.82
10 6 0.18
ACGTcount: A:0.49, C:0.04, G:0.00, T:0.47
Consensus pattern (9 bp):
TAAAATTTC
Found at i:8500591 original size:9 final size:9
Alignment explanation
Indices: 8500549--8500601 Score: 61
Period size: 9 Copynumber: 5.7 Consensus size: 9
8500539 TAAAAATCAT
*
8500549 TAAAATATTT
1 TAAAAT-TTA
*
8500559 TAAAATTTC
1 TAAAATTTA
*
8500568 TAAAATTTC
1 TAAAATTTA
8500577 TAAAATTTA
1 TAAAATTTA
8500586 TAAAATTTA
1 TAAAATTTA
8500595 TGAAAAT
1 T-AAAAT
8500602 ATATTTTTTA
Statistics
Matches: 40, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
9 29 0.73
10 11 0.28
ACGTcount: A:0.51, C:0.04, G:0.02, T:0.43
Consensus pattern (9 bp):
TAAAATTTA
Found at i:8502057 original size:9 final size:9
Alignment explanation
Indices: 8502040--8502073 Score: 50
Period size: 9 Copynumber: 3.7 Consensus size: 9
8502030 GAATATAAAT
*
8502040 AAATGAAAC
1 AAATAAAAC
8502049 AAATAAAAC
1 AAATAAAAC
8502058 AAATAATAAC
1 AAATAA-AAC
8502068 AAATAA
1 AAATAA
8502074 TATTAATGAA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
9 14 0.61
10 9 0.39
ACGTcount: A:0.74, C:0.09, G:0.03, T:0.15
Consensus pattern (9 bp):
AAATAAAAC
Found at i:8502070 original size:10 final size:10
Alignment explanation
Indices: 8502046--8502075 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
8502036 AAATAAATGA
8502046 AACAAATAA-
1 AACAAATAAT
8502055 AACAAATAAT
1 AACAAATAAT
8502065 AACAAATAAT
1 AACAAATAAT
8502075 A
1 A
8502076 TTAATGAAAC
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 9 0.45
10 11 0.55
ACGTcount: A:0.73, C:0.10, G:0.00, T:0.17
Consensus pattern (10 bp):
AACAAATAAT
Found at i:8503218 original size:4 final size:4
Alignment explanation
Indices: 8503209--8503233 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
8503199 GTAAGTTTAC
8503209 TATT TATT TATT TATT TATT TATT T
1 TATT TATT TATT TATT TATT TATT T
8503234 CAGCACAAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (4 bp):
TATT
Found at i:8504480 original size:36 final size:34
Alignment explanation
Indices: 8504404--8504482 Score: 97
Period size: 36 Copynumber: 2.3 Consensus size: 34
8504394 CATTTTTAAA
* *
8504404 TTTTTAAAAATTAAAAAATATAAATTATTTAAAT
1 TTTTTAAAAATTAAAAAATATAAATAATTAAAAT
*
8504438 TATTTAAAAATATATAAAAATATAAA-AATTAACAAT
1 TTTTTAAAAAT-TA-AAAAATATAAATAATTAA-AAT
8504474 TTTTTAAAA
1 TTTTTAAAA
8504483 TATGTTTTAA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
34 10 0.26
35 6 0.16
36 22 0.58
ACGTcount: A:0.58, C:0.01, G:0.00, T:0.41
Consensus pattern (34 bp):
TTTTTAAAAATTAAAAAATATAAATAATTAAAAT
Found at i:8512239 original size:21 final size:21
Alignment explanation
Indices: 8512205--8512254 Score: 64
Period size: 21 Copynumber: 2.4 Consensus size: 21
8512195 AGCATTGTGG
*
8512205 CAGTTTCAAAGAAAGATAAAC
1 CAGTTCCAAAGAAAGATAAAC
* * *
8512226 CAGTTCCAAGGAAAGATAGAT
1 CAGTTCCAAAGAAAGATAAAC
8512247 CAGTTCCA
1 CAGTTCCA
8512255 TGATGAGGAT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.44, C:0.18, G:0.18, T:0.20
Consensus pattern (21 bp):
CAGTTCCAAAGAAAGATAAAC
Found at i:8514658 original size:61 final size:61
Alignment explanation
Indices: 8514562--8514690 Score: 170
Period size: 61 Copynumber: 2.1 Consensus size: 61
8514552 CACGACCTAG
* * * *
8514562 CACACGGGTGTGTGGCTTGGTTGTGTGACATCTGCACCTATTTAATACAAGTCAGTATGAT
1 CACACGGGCGTGTGGCTTGGCTGTGTGACACCTGCACCTATTTAATACAAGTCAATATGAT
* * * *
8514623 CACACGGGCGTGTGGCTTGGCCT-TGTGACCCCTGCACCTATTTAATGCAAGTTAATATGCT
1 CACACGGGCGTGTGGCTTGG-CTGTGTGACACCTGCACCTATTTAATACAAGTCAATATGAT
8514684 CACACGG
1 CACACGG
8514691 CCTAGCACAC
Statistics
Matches: 59, Mismatches: 8, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
61 58 0.98
62 1 0.02
ACGTcount: A:0.22, C:0.23, G:0.26, T:0.29
Consensus pattern (61 bp):
CACACGGGCGTGTGGCTTGGCTGTGTGACACCTGCACCTATTTAATACAAGTCAATATGAT
Found at i:8518474 original size:41 final size:41
Alignment explanation
Indices: 8518417--8518495 Score: 158
Period size: 41 Copynumber: 1.9 Consensus size: 41
8518407 AATATAAAAG
8518417 TGTAATTTAATATCTTTAAATTTAGTATGACTGTTAATTTT
1 TGTAATTTAATATCTTTAAATTTAGTATGACTGTTAATTTT
8518458 TGTAATTTAATATCTTTAAATTTAGTATGACTGTTAAT
1 TGTAATTTAATATCTTTAAATTTAGTATGACTGTTAAT
8518496 ATCAAAGGGT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 38 1.00
ACGTcount: A:0.33, C:0.05, G:0.10, T:0.52
Consensus pattern (41 bp):
TGTAATTTAATATCTTTAAATTTAGTATGACTGTTAATTTT
Found at i:8526525 original size:56 final size:57
Alignment explanation
Indices: 8526464--8526575 Score: 147
Period size: 56 Copynumber: 2.0 Consensus size: 57
8526454 TTAGATGATA
** * *
8526464 TTTTAGAATTATGACCAAATTGATAAGAA-GTATAAATATTAA-GATTAAATTTATTT
1 TTTTAGAATTAAAACCAAATCGAT-AGAATATATAAATATTAAGGATTAAATTTATTT
* *
8526520 TTTTAGAGTTAAAATCAAATCGATAGAATATATAAATATTAAGGATTAAATTTATT
1 TTTTAGAATTAAAACCAAATCGATAGAATATATAAATATTAAGGATTAAATTTATT
8526576 ATTATATCAA
Statistics
Matches: 48, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
55 4 0.08
56 31 0.65
57 13 0.27
ACGTcount: A:0.46, C:0.04, G:0.11, T:0.40
Consensus pattern (57 bp):
TTTTAGAATTAAAACCAAATCGATAGAATATATAAATATTAAGGATTAAATTTATTT
Found at i:8527148 original size:17 final size:17
Alignment explanation
Indices: 8527123--8527156 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
8527113 TCATTTAATT
*
8527123 TTATATTAAAAATATAA
1 TTATATTAAAAAAATAA
*
8527140 TTATTTTAAAAAAATAA
1 TTATATTAAAAAAATAA
8527157 ATATCAAAAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (17 bp):
TTATATTAAAAAAATAA
Found at i:8534834 original size:21 final size:22
Alignment explanation
Indices: 8534804--8534844 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
8534794 TTACCCCTTT
8534804 TTTTTAATTTCATCTTATTTCC
1 TTTTTAATTTCATCTTATTTCC
* *
8534826 TTTTT-ATTTTATTTTATTT
1 TTTTTAATTTCATCTTATTT
8534845 TTACCCCTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 12 0.71
22 5 0.29
ACGTcount: A:0.17, C:0.10, G:0.00, T:0.73
Consensus pattern (22 bp):
TTTTTAATTTCATCTTATTTCC
Found at i:8534853 original size:26 final size:26
Alignment explanation
Indices: 8534791--8534860 Score: 67
Period size: 25 Copynumber: 2.8 Consensus size: 26
8534781 GTCCTTCCGC
*
8534791 TTTTTACCCCTTTTT-TTTAATTTCA
1 TTTTTACCCCTTTTTATTTTATTTCA
* *
8534816 TCTTATT--TCCTTTTTATTTTATTTTA
1 T-TT-TTACCCCTTTTTATTTTATTTCA
8534842 TTTTTACCCC-TTTTATTTT
1 TTTTTACCCCTTTTTATTTT
8534861 GCTCTTGTGC
Statistics
Matches: 36, Mismatches: 4, Indels: 10
0.72 0.08 0.20
Matches are distributed among these distances:
24 2 0.06
25 19 0.53
26 13 0.36
27 2 0.06
ACGTcount: A:0.14, C:0.17, G:0.00, T:0.69
Consensus pattern (26 bp):
TTTTTACCCCTTTTTATTTTATTTCA
Found at i:8537244 original size:40 final size:39
Alignment explanation
Indices: 8537183--8537258 Score: 100
Period size: 40 Copynumber: 1.9 Consensus size: 39
8537173 AAAAGCCCCT
*
8537183 AAAAAAGAGCATTAACGGCGCTTCTACA-AAAACGCCACA
1 AAAAAAGAGCATTAACAGCGCTTCTA-AGAAAACGCCACA
* *
8537222 AAAAAACGAGCATTAGCAGCGCTTTTAAGAAAACGCC
1 AAAAAA-GAGCATTAACAGCGCTTCTAAGAAAACGCC
8537259 GCTATAGGTT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
39 7 0.22
40 25 0.78
ACGTcount: A:0.45, C:0.24, G:0.17, T:0.14
Consensus pattern (39 bp):
AAAAAAGAGCATTAACAGCGCTTCTAAGAAAACGCCACA
Found at i:8537963 original size:21 final size:21
Alignment explanation
Indices: 8537939--8538006 Score: 66
Period size: 21 Copynumber: 3.2 Consensus size: 21
8537929 TAGTTGGAGT
* *
8537939 TTAAGATTTAGGAGTTATGGG
1 TTAAGAATTAGGAGTTAGGGG
*
8537960 TTAAGAATTAGGGGTTAGGGG
1 TTAAGAATTAGGAGTTAGGGG
* * *
8537981 TTAGGGGATAAGGA-TTAGGGG
1 TTA-AGAATTAGGAGTTAGGGG
8538002 TTAAG
1 TTAAG
8538007 GGTTAAGAGT
Statistics
Matches: 38, Mismatches: 8, Indels: 3
0.78 0.16 0.06
Matches are distributed among these distances:
20 1 0.03
21 31 0.82
22 6 0.16
ACGTcount: A:0.29, C:0.00, G:0.40, T:0.31
Consensus pattern (21 bp):
TTAAGAATTAGGAGTTAGGGG
Found at i:8537976 original size:14 final size:14
Alignment explanation
Indices: 8537957--8538007 Score: 66
Period size: 14 Copynumber: 3.6 Consensus size: 14
8537947 TAGGAGTTAT
*
8537957 GGGTTAAGAATTAG
1 GGGTTAAGGATTAG
* *
8537971 GGGTTAGGGGTTAG
1 GGGTTAAGGATTAG
*
8537985 GGGATAAGGATTAG
1 GGGTTAAGGATTAG
8537999 GGGTTAAGG
1 GGGTTAAGG
8538008 GTTAAGAGTT
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
14 30 1.00
ACGTcount: A:0.27, C:0.00, G:0.47, T:0.25
Consensus pattern (14 bp):
GGGTTAAGGATTAG
Found at i:8537977 original size:7 final size:7
Alignment explanation
Indices: 8537967--8538011 Score: 54
Period size: 7 Copynumber: 6.4 Consensus size: 7
8537957 GGGTTAAGAA
8537967 TTAGGGG
1 TTAGGGG
8537974 TTAGGGG
1 TTAGGGG
8537981 TTAGGGG
1 TTAGGGG
* * *
8537988 ATAAGGA
1 TTAGGGG
8537995 TTAGGGG
1 TTAGGGG
*
8538002 TTAAGGG
1 TTAGGGG
8538009 TTA
1 TTA
8538012 AGAGTTTATG
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
7 31 1.00
ACGTcount: A:0.24, C:0.00, G:0.47, T:0.29
Consensus pattern (7 bp):
TTAGGGG
Found at i:8538009 original size:28 final size:28
Alignment explanation
Indices: 8537952--8538011 Score: 84
Period size: 28 Copynumber: 2.1 Consensus size: 28
8537942 AGATTTAGGA
* * *
8537952 GTTATGGGTTAAGAATTAGGGGTTAGGG
1 GTTAGGGGATAAGAATTAGGGGTTAAGG
*
8537980 GTTAGGGGATAAGGATTAGGGGTTAAGG
1 GTTAGGGGATAAGAATTAGGGGTTAAGG
8538008 GTTA
1 GTTA
8538012 AGAGTTTATG
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.27, C:0.00, G:0.43, T:0.30
Consensus pattern (28 bp):
GTTAGGGGATAAGAATTAGGGGTTAAGG
Found at i:8538013 original size:21 final size:21
Alignment explanation
Indices: 8537974--8538013 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
8537964 GAATTAGGGG
*
8537974 TTAGGGGTTAGGGGATAAGGA
1 TTAGGGGTTAAGGGATAAGGA
*
8537995 TTAGGGGTTAAGGGTTAAG
1 TTAGGGGTTAAGGGATAAG
8538014 AGTTTATGAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.28, C:0.00, G:0.45, T:0.28
Consensus pattern (21 bp):
TTAGGGGTTAAGGGATAAGGA
Found at i:8538693 original size:22 final size:22
Alignment explanation
Indices: 8538667--8538709 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
8538657 ATTATCATCA
**
8538667 TATTAACATTTATCATCATTAC
1 TATTAACATTTAAAATCATTAC
*
8538689 TATTAATATTTAAAATCATTA
1 TATTAACATTTAAAATCATTA
8538710 ATCTAAAGAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.42, C:0.12, G:0.00, T:0.47
Consensus pattern (22 bp):
TATTAACATTTAAAATCATTAC
Found at i:8539480 original size:14 final size:13
Alignment explanation
Indices: 8539443--8539476 Score: 68
Period size: 13 Copynumber: 2.6 Consensus size: 13
8539433 AGCTTAAGTG
8539443 TTTTCCCCTAAAA
1 TTTTCCCCTAAAA
8539456 TTTTCCCCTAAAA
1 TTTTCCCCTAAAA
8539469 TTTTCCCC
1 TTTTCCCC
8539477 CTAACCCTAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.24, C:0.35, G:0.00, T:0.41
Consensus pattern (13 bp):
TTTTCCCCTAAAA
Found at i:8539564 original size:27 final size:28
Alignment explanation
Indices: 8539532--8539587 Score: 78
Period size: 27 Copynumber: 2.0 Consensus size: 28
8539522 TTGCTGGACC
*
8539532 CGACCATCTATTGCATCACCATCG-ACT
1 CGACCATCTACTGCATCACCATCGCACT
* *
8539559 CGACCATCTGCTGCATCACCGTCGCACT
1 CGACCATCTACTGCATCACCATCGCACT
8539587 C
1 C
8539588 CTTTGCTGCA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
27 21 0.84
28 4 0.16
ACGTcount: A:0.21, C:0.41, G:0.14, T:0.23
Consensus pattern (28 bp):
CGACCATCTACTGCATCACCATCGCACT
Found at i:8541150 original size:22 final size:21
Alignment explanation
Indices: 8541116--8541170 Score: 56
Period size: 22 Copynumber: 2.5 Consensus size: 21
8541106 TTGTTATTGA
*
8541116 TTTTAATAAAATATTAAATATAT
1 TTTTAAT-TAATATTAAATAT-T
**
8541139 TTTTAATTAATATTTTATATT
1 TTTTAATTAATATTAAATATT
8541160 TTTTAAATTAA
1 TTTT-AATTAA
8541171 AAATTAAAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
21 5 0.18
22 16 0.57
23 7 0.25
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (21 bp):
TTTTAATTAATATTAAATATT
Found at i:8541904 original size:64 final size:64
Alignment explanation
Indices: 8541836--8541969 Score: 232
Period size: 64 Copynumber: 2.1 Consensus size: 64
8541826 TAATATTTCT
* * * *
8541836 ATATTTTTATCATGATTTTTAATAAATTTATTTATTGATATAATATGTCTCATCTAATATACAA
1 ATATTTTTATCACGATTTTTAATAAATTTATTTATTAATATAATATATCCCATCTAATATACAA
8541900 ATATTTTTATCACGATTTTTAATAAATTTATTTATTAATATAATATATCCCATCTAATATACAA
1 ATATTTTTATCACGATTTTTAATAAATTTATTTATTAATATAATATATCCCATCTAATATACAA
8541964 ATATTT
1 ATATTT
8541970 AATAAAATAT
Statistics
Matches: 66, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
64 66 1.00
ACGTcount: A:0.39, C:0.09, G:0.03, T:0.49
Consensus pattern (64 bp):
ATATTTTTATCACGATTTTTAATAAATTTATTTATTAATATAATATATCCCATCTAATATACAA
Found at i:8541982 original size:64 final size:64
Alignment explanation
Indices: 8541849--8541983 Score: 193
Period size: 64 Copynumber: 2.1 Consensus size: 64
8541839 TTTTTATCAT
* * * * * *
8541849 GATTTTTAATAAATTTATTTATTGATATAATATGTCTCATCTAATATACAAATATTTTTATCAC
1 GATTTTTAATAAATTTATTTATTAATATAATATATCCCATCTAATATACAAATATTTATATAAA
8541913 GATTTTTAATAAATTTATTTATTAATATAATATATCCCATCTAATATACAAATATTTA-ATAAA
1 GATTTTTAATAAATTTATTTATTAATATAATATATCCCATCTAATATACAAATATTTATATAAA
8541976 -ATATTTTA
1 GAT-TTTTA
8541984 TATAGTTTTT
Statistics
Matches: 64, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
62 2 0.03
63 8 0.12
64 54 0.84
ACGTcount: A:0.41, C:0.08, G:0.03, T:0.47
Consensus pattern (64 bp):
GATTTTTAATAAATTTATTTATTAATATAATATATCCCATCTAATATACAAATATTTATATAAA
Found at i:8542088 original size:24 final size:24
Alignment explanation
Indices: 8542017--8542088 Score: 108
Period size: 24 Copynumber: 3.0 Consensus size: 24
8542007 ATTATTATTG
* *
8542017 AAATATTCTCGTCCGTTTTATCAC
1 AAATATTATCGTCCGTTTTATCAT
* *
8542041 AAATATTGTTGTCCGTTTTATCAT
1 AAATATTATCGTCCGTTTTATCAT
8542065 AAATATTATCGTCCGTTTTATCAT
1 AAATATTATCGTCCGTTTTATCAT
8542089 TTAAGTTAAA
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 43 1.00
ACGTcount: A:0.26, C:0.18, G:0.10, T:0.46
Consensus pattern (24 bp):
AAATATTATCGTCCGTTTTATCAT
Found at i:8542293 original size:29 final size:29
Alignment explanation
Indices: 8542261--8542334 Score: 130
Period size: 29 Copynumber: 2.6 Consensus size: 29
8542251 AACGACATGT
* *
8542261 ATATTATTTAATTAAAATAATTTTTTTCA
1 ATATTATTTAATTAAAATAATTTTTATAA
8542290 ATATTATTTAATTAAAATAATTTTTATAA
1 ATATTATTTAATTAAAATAATTTTTATAA
8542319 ATATTATTTAATTAAA
1 ATATTATTTAATTAAA
8542335 CATTATTTAA
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.46, C:0.01, G:0.00, T:0.53
Consensus pattern (29 bp):
ATATTATTTAATTAAAATAATTTTTATAA
Found at i:8542334 original size:15 final size:15
Alignment explanation
Indices: 8542261--8542346 Score: 81
Period size: 15 Copynumber: 5.9 Consensus size: 15
8542251 AACGACATGT
8542261 ATATTATTTAATTAA
1 ATATTATTTAATTAA
* ** *
8542276 A-ATAATTTTTTTCA
1 ATATTATTTAATTAA
8542290 ATATTATTTAATTAAA
1 ATATTATTTAATT-AA
8542306 ATAATT-TTT-A-TAA
1 AT-ATTATTTAATTAA
8542319 ATATTATTTAATTAA
1 ATATTATTTAATTAA
*
8542334 ACATTATTTAATT
1 ATATTATTTAATT
8542347 CGCAACTTAC
Statistics
Matches: 56, Mismatches: 9, Indels: 12
0.73 0.12 0.16
Matches are distributed among these distances:
12 3 0.05
13 7 0.12
14 12 0.21
15 25 0.45
16 6 0.11
17 3 0.05
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.53
Consensus pattern (15 bp):
ATATTATTTAATTAA
Found at i:8542474 original size:9 final size:9
Alignment explanation
Indices: 8542456--8542638 Score: 160
Period size: 9 Copynumber: 20.7 Consensus size: 9
8542446 TAAATATTTA
8542456 ACATAACTT
1 ACATAACTT
*
8542465 ACAAAACTT
1 ACATAACTT
8542474 ACATAACTT
1 ACATAACTT
*
8542483 ATATAACTT
1 ACATAACTT
* *
8542492 AGATAA-AT
1 ACATAACTT
*
8542500 ATATAACTT
1 ACATAACTT
8542509 ACATAACTT
1 ACATAACTT
*
8542518 ATATAACTT
1 ACATAACTT
*
8542527 ATATAACTT
1 ACATAACTT
*
8542536 ACATAA-AT
1 ACATAACTT
*
8542544 ATATAACTT
1 ACATAACTT
8542553 ACATAACTT
1 ACATAACTT
8542562 ACATAACTT
1 ACATAACTT
*
8542571 ATATAACTT
1 ACATAACTT
*
8542580 AGATAAAC--
1 ACAT-AACTT
*
8542588 ATATAACTT
1 ACATAACTT
*
8542597 ACATAA-AT
1 ACATAACTT
* * *
8542605 ATATATCAT
1 ACATAACTT
8542614 ATCATAACTT
1 A-CATAACTT
*
8542624 ACATAGCTT
1 ACATAACTT
8542633 ACATAA
1 ACATAA
8542639 TACTTAAATA
Statistics
Matches: 141, Mismatches: 26, Indels: 14
0.78 0.14 0.08
Matches are distributed among these distances:
7 3 0.02
8 20 0.14
9 109 0.77
10 9 0.06
ACGTcount: A:0.48, C:0.15, G:0.02, T:0.35
Consensus pattern (9 bp):
ACATAACTT
Found at i:8542506 original size:44 final size:44
Alignment explanation
Indices: 8542458--8542602 Score: 254
Period size: 44 Copynumber: 3.3 Consensus size: 44
8542448 AATATTTAAC
*
8542458 ATAACTTACAAAACTTACATAACTTATATAACTTAGATAAATAT
1 ATAACTTACATAACTTACATAACTTATATAACTTAGATAAATAT
* *
8542502 ATAACTTACATAACTTATATAACTTATATAACTTACATAAATAT
1 ATAACTTACATAACTTACATAACTTATATAACTTAGATAAATAT
*
8542546 ATAACTTACATAACTTACATAACTTATATAACTTAGATAAACAT
1 ATAACTTACATAACTTACATAACTTATATAACTTAGATAAATAT
8542590 ATAACTTACATAA
1 ATAACTTACATAA
8542603 ATATATATCA
Statistics
Matches: 95, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
44 95 1.00
ACGTcount: A:0.49, C:0.14, G:0.01, T:0.35
Consensus pattern (44 bp):
ATAACTTACATAACTTACATAACTTATATAACTTAGATAAATAT
Found at i:8542515 original size:35 final size:36
Alignment explanation
Indices: 8542469--8542638 Score: 170
Period size: 35 Copynumber: 4.8 Consensus size: 36
8542459 TAACTTACAA
*
8542469 AACTTACATAACTTATATAACTTAGATAA-ATATAT
1 AACTTACATAACTTATATAACTTACATAACATATAT
* * *
8542504 AACTTACATAACTTATATAACTTATATAACTTACAT
1 AACTTACATAACTTATATAACTTACATAACATATAT
* * * *
8542540 AA-ATATATAACTTACATAACTTACATAACTTATAT
1 AACTTACATAACTTATATAACTTACATAACATATAT
*
8542575 AACTTAGATAAAC--ATATAACTTACATAA-ATATAT
1 AACTTACAT-AACTTATATAACTTACATAACATATAT
* * * *
8542609 ATCATATCATAACTTACATAGCTTACATAA
1 AACTTA-CATAACTTATATAACTTACATAA
8542639 TACTTAAATA
Statistics
Matches: 112, Mismatches: 17, Indels: 11
0.80 0.12 0.08
Matches are distributed among these distances:
34 12 0.11
35 74 0.66
36 23 0.21
37 3 0.03
ACGTcount: A:0.48, C:0.15, G:0.02, T:0.36
Consensus pattern (36 bp):
AACTTACATAACTTATATAACTTACATAACATATAT
Found at i:8542526 original size:53 final size:53
Alignment explanation
Indices: 8542456--8542638 Score: 192
Period size: 53 Copynumber: 3.5 Consensus size: 53
8542446 TAAATATTTA
* *
8542456 ACATAACTTACAAAACTTACATAACTTATATAACTTAGATAAATATATAACTT
1 ACATAACTTACATAACTTACATAACTTATATAACTTACATAAATATATAACTT
* * * * * * *
8542509 ACATAACTTATATAACTTATATAACTTACATAA-ATATATAACTTACATAACTT
1 ACATAACTTACATAACTTACATAACTTATATAACTTACATAA-ATATATAACTT
* * * *
8542562 ACATAACTTATATAACTTAGATAAAC--ATATAACTTACATAAATATATATCAT
1 ACATAACTTACATAACTTACAT-AACTTATATAACTTACATAAATATATAACTT
*
8542614 ATCATAACTTACATAGCTTACATAA
1 A-CATAACTTACATAACTTACATAA
8542639 TACTTAAATA
Statistics
Matches: 107, Mismatches: 19, Indels: 9
0.79 0.14 0.07
Matches are distributed among these distances:
52 21 0.20
53 83 0.78
54 3 0.03
ACGTcount: A:0.48, C:0.15, G:0.02, T:0.35
Consensus pattern (53 bp):
ACATAACTTACATAACTTACATAACTTATATAACTTACATAAATATATAACTT
Found at i:8542562 original size:88 final size:88
Alignment explanation
Indices: 8542458--8542628 Score: 281
Period size: 88 Copynumber: 1.9 Consensus size: 88
8542448 AATATTTAAC
* *
8542458 ATAACTTACAAAACTTACATAACTTATATAACTTAGATAAATATATAACTTACATAACTTATATA
1 ATAACTTACAAAACTTACATAACTTATATAACTTAGATAAACATATAACTTACATAA-ATATATA
*
8542523 ACTTAT-ATAACTTACATAAATAT
65 ACATATCATAACTTACATAAATAT
* *
8542546 ATAACTTACATAACTTACATAACTTATATAACTTAGATAAACATATAACTTACATAAATATATAT
1 ATAACTTACAAAACTTACATAACTTATATAACTTAGATAAACATATAACTTACATAAATATATAA
8542611 CATATCATAACTTACATA
66 CATATCATAACTTACATA
8542629 GCTTACATAA
Statistics
Matches: 77, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
87 10 0.13
88 67 0.87
ACGTcount: A:0.49, C:0.15, G:0.01, T:0.36
Consensus pattern (88 bp):
ATAACTTACAAAACTTACATAACTTATATAACTTAGATAAACATATAACTTACATAAATATATAA
CATATCATAACTTACATAAATAT
Found at i:8542621 original size:44 final size:44
Alignment explanation
Indices: 8542458--8542624 Score: 246
Period size: 44 Copynumber: 3.8 Consensus size: 44
8542448 AATATTTAAC
* *
8542458 ATAACTTACAAAACTTACATAACTTATATAACTTAGATAAATAT
1 ATAACTTACATAACTTATATAACTTATATAACTTAGATAAATAT
*
8542502 ATAACTTACATAACTTATATAACTTATATAACTTACATAAATAT
1 ATAACTTACATAACTTATATAACTTATATAACTTAGATAAATAT
* *
8542546 ATAACTTACATAACTTACATAACTTATATAACTTAGATAAACAT
1 ATAACTTACATAACTTATATAACTTATATAACTTAGATAAATAT
* * *
8542590 ATAACTTACATAA-ATATATATCATATCATAACTTA
1 ATAACTTACATAACTTATATAACTTAT-ATAACTTA
8542625 CATAGCTTAC
Statistics
Matches: 112, Mismatches: 10, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
43 9 0.08
44 103 0.92
ACGTcount: A:0.49, C:0.14, G:0.01, T:0.36
Consensus pattern (44 bp):
ATAACTTACATAACTTATATAACTTATATAACTTAGATAAATAT
Found at i:8542700 original size:74 final size:74
Alignment explanation
Indices: 8542618--8542777 Score: 302
Period size: 74 Copynumber: 2.2 Consensus size: 74
8542608 TATCATATCA
* *
8542618 TAACTTACATAGCTTACATAATACTTAAATATATTTGATATCATAATTTACATAACTAGCTTACG
1 TAACTTACATAACTTACATAATACTTAAATATATATGATATCATAATTTACATAACTAGCTTACG
8542683 AAACTTACT
66 AAACTTACT
8542692 TAACTTACATAACTTACATAATACTTAAATATATATGATATCATAATTTACATAACTAGCTTACG
1 TAACTTACATAACTTACATAATACTTAAATATATATGATATCATAATTTACATAACTAGCTTACG
8542757 AAACTTACT
66 AAACTTACT
8542766 TAACTTACATAA
1 TAACTTACATAA
8542778 TACACAAATC
Statistics
Matches: 84, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
74 84 1.00
ACGTcount: A:0.42, C:0.16, G:0.04, T:0.37
Consensus pattern (74 bp):
TAACTTACATAACTTACATAATACTTAAATATATATGATATCATAATTTACATAACTAGCTTACG
AAACTTACT
Found at i:8550372 original size:26 final size:26
Alignment explanation
Indices: 8550343--8550478 Score: 227
Period size: 26 Copynumber: 5.2 Consensus size: 26
8550333 CATGATATTC
*
8550343 TTATCTTGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
8550369 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
8550395 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
8550421 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
8550447 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
8550473 TTATCA
1 TTATCA
8550479 ATTTGTATCA
Statistics
Matches: 103, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 103 1.00
ACGTcount: A:0.36, C:0.25, G:0.05, T:0.34
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:8550980 original size:13 final size:14
Alignment explanation
Indices: 8550964--8550992 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
8550954 TTCTAAATAT
8550964 TTATAA-TGTTTAA
1 TTATAATTGTTTAA
8550977 TTATAATTGTTTAA
1 TTATAATTGTTTAA
8550991 TT
1 TT
8550993 CAACATCATT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 6 0.40
14 9 0.60
ACGTcount: A:0.34, C:0.00, G:0.07, T:0.59
Consensus pattern (14 bp):
TTATAATTGTTTAA
Found at i:8551478 original size:21 final size:21
Alignment explanation
Indices: 8551427--8551479 Score: 63
Period size: 21 Copynumber: 2.5 Consensus size: 21
8551417 GGGAAACAGC
* *
8551427 GACAGTAGCGAGGGAGGCAGA
1 GACAGCAGCGAGAGAGGCAGA
*
8551448 GGCA-CGAGCGAGAGAGGCAGA
1 GACAGC-AGCGAGAGAGGCAGA
8551469 GACAGCAGCGA
1 GACAGCAGCGA
8551480 TGGCAGCAGA
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
21 25 0.96
22 1 0.04
ACGTcount: A:0.34, C:0.19, G:0.45, T:0.02
Consensus pattern (21 bp):
GACAGCAGCGAGAGAGGCAGA
Found at i:8551911 original size:43 final size:43
Alignment explanation
Indices: 8551864--8552043 Score: 202
Period size: 43 Copynumber: 4.2 Consensus size: 43
8551854 TTTGTGGGAA
* * * ***
8551864 AAACGTCGCTAAAAGTCATGGA-TTTTAGCGGCGCGTTCCCAAC
1 AAACGCCGCTAAAAGTCAT-GACTTTTAACGGCGCTTTTTTAAC
* *
8551907 AAACGCCGCTAAAAG-CAATTACTTTTAACGGCACTTTTTTAAC
1 AAACGCCGCTAAAAGTC-ATGACTTTTAACGGCGCTTTTTTAAC
* *
8551950 AAACGCCGCTAAAAGCCATGACTTTTAGCGGCGCTTTTTTAAC
1 AAACGCCGCTAAAAGTCATGACTTTTAACGGCGCTTTTTTAAC
* * *
8551993 AAACGCCGCTAAAAGTCATGGCTTTTAACGGCGTTTTTTTAAAT
1 AAACGCCGCTAAAAGTCATGACTTTTAACGGCGCTTTTTT-AAC
8552037 AAACGCC
1 AAACGCC
8552044 ATAAATTTTT
Statistics
Matches: 117, Mismatches: 16, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
42 2 0.02
43 105 0.90
44 10 0.09
ACGTcount: A:0.31, C:0.24, G:0.18, T:0.28
Consensus pattern (43 bp):
AAACGCCGCTAAAAGTCATGACTTTTAACGGCGCTTTTTTAAC
Found at i:8556772 original size:12 final size:12
Alignment explanation
Indices: 8556757--8556786 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
8556747 GGCTTAGCAT
8556757 ACGGCCTGGCAC
1 ACGGCCTGGCAC
8556769 ACGGCCTGGCAC
1 ACGGCCTGGCAC
8556781 ACGGCC
1 ACGGCC
8556787 GTGTAACTCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.17, C:0.43, G:0.33, T:0.07
Consensus pattern (12 bp):
ACGGCCTGGCAC
Found at i:8559816 original size:7 final size:7
Alignment explanation
Indices: 8559801--8559829 Score: 51
Period size: 7 Copynumber: 4.3 Consensus size: 7
8559791 TCCCCACTTT
8559801 AAAAA-A
1 AAAAAGA
8559807 AAAAAGA
1 AAAAAGA
8559814 AAAAAGA
1 AAAAAGA
8559821 AAAAAGA
1 AAAAAGA
8559828 AA
1 AA
8559830 GAATATTTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 5 0.23
7 17 0.77
ACGTcount: A:0.90, C:0.00, G:0.10, T:0.00
Consensus pattern (7 bp):
AAAAAGA
Found at i:8560157 original size:3 final size:3
Alignment explanation
Indices: 8560149--8560185 Score: 56
Period size: 3 Copynumber: 12.0 Consensus size: 3
8560139 TTATTTAAAA
*
8560149 TAT TAT TAT TAT TAT TAT TAT TAT TAAG TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT T-AT TAT TAT TAT
8560186 AATGTAAATA
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
3 29 0.94
4 2 0.06
ACGTcount: A:0.35, C:0.00, G:0.03, T:0.62
Consensus pattern (3 bp):
TAT
Found at i:8563060 original size:13 final size:13
Alignment explanation
Indices: 8563042--8563067 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
8563032 TATAAGTAAC
8563042 AAAATATATATAA
1 AAAATATATATAA
8563055 AAAATATATATAA
1 AAAATATATATAA
8563068 TACATAAGGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (13 bp):
AAAATATATATAA
Found at i:8566231 original size:66 final size:66
Alignment explanation
Indices: 8566109--8566238 Score: 179
Period size: 66 Copynumber: 2.0 Consensus size: 66
8566099 TCTGTGTACG
* * * *
8566109 TCAAATAACTAGGATGTTATGATCGAGATGAATCAAGTGCTCCTAGCTAAACGTGTTATGAATGG
1 TCAAATAACTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAACTAAACGTGTTATGAATGG
8566174 A
66 A
* * * * *
8566175 TCAAATAACTAGGATGCTATGATTGAAATGAATCAAATGCTCTTAATTAGATGTGTTATGAATG
1 TCAAATAACTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAACTAAACGTGTTATGAATG
8566239 ATGTATGAAT
Statistics
Matches: 55, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
66 55 1.00
ACGTcount: A:0.36, C:0.12, G:0.21, T:0.32
Consensus pattern (66 bp):
TCAAATAACTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAACTAAACGTGTTATGAATGG
A
Found at i:8566977 original size:7 final size:8
Alignment explanation
Indices: 8566963--8566993 Score: 53
Period size: 8 Copynumber: 3.8 Consensus size: 8
8566953 TGGCCTCTCC
8566963 ATTTTTTT
1 ATTTTTTT
8566971 ATTTTTTT
1 ATTTTTTT
8566979 ATTTTTTTT
1 A-TTTTTTT
8566988 ATTTTT
1 ATTTTT
8566994 AGGTAAAATA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
8 14 0.64
9 8 0.36
ACGTcount: A:0.13, C:0.00, G:0.00, T:0.87
Consensus pattern (8 bp):
ATTTTTTT
Found at i:8566978 original size:9 final size:9
Alignment explanation
Indices: 8566964--8566993 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
8566954 GGCCTCTCCA
8566964 TTTTTTTA-
1 TTTTTTTAT
8566972 TTTTTTTAT
1 TTTTTTTAT
8566981 TTTTTTTAT
1 TTTTTTTAT
8566990 TTTT
1 TTTT
8566994 AGGTAAAATA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
8 8 0.38
9 13 0.62
ACGTcount: A:0.10, C:0.00, G:0.00, T:0.90
Consensus pattern (9 bp):
TTTTTTTAT
Found at i:8584751 original size:29 final size:29
Alignment explanation
Indices: 8584719--8584796 Score: 84
Period size: 29 Copynumber: 2.7 Consensus size: 29
8584709 ATACCCTCCG
* *
8584719 AGCTCGCACACCCAGTGCCGTATTTTTCC
1 AGCTCGCACACCCAGTGCCATATATTTCC
* **
8584748 AGCTTGCACACTTAGTGCCATATATTTCC
1 AGCTCGCACACCCAGTGCCATATATTTCC
* **
8584777 AGCACGCACACTTAGTGCCA
1 AGCTCGCACACCCAGTGCCA
8584797 ATCTCGTCAC
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
29 42 1.00
ACGTcount: A:0.23, C:0.33, G:0.17, T:0.27
Consensus pattern (29 bp):
AGCTCGCACACCCAGTGCCATATATTTCC
Found at i:8603611 original size:6 final size:6
Alignment explanation
Indices: 8603590--8603629 Score: 53
Period size: 6 Copynumber: 6.5 Consensus size: 6
8603580 ATTTAAAAAC
* *
8603590 TTTTTA TTTATTA TTTTTA TTTTCA CTTTTA TTTTTA TTT
1 TTTTTA TTT-TTA TTTTTA TTTTTA TTTTTA TTTTTA TTT
8603630 ATCTTATTTA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
6 23 0.79
7 6 0.21
ACGTcount: A:0.17, C:0.05, G:0.00, T:0.78
Consensus pattern (6 bp):
TTTTTA
Found at i:8618332 original size:39 final size:39
Alignment explanation
Indices: 8618288--8618372 Score: 152
Period size: 39 Copynumber: 2.2 Consensus size: 39
8618278 AGTATATGTT
8618288 AGTAGATAATGACAACCCAAGCCATAGAATTAGAAATTG
1 AGTAGATAATGACAACCCAAGCCATAGAATTAGAAATTG
*
8618327 AGTAGATAATGACAACCCAAGCCATGGAATTAGAAATTG
1 AGTAGATAATGACAACCCAAGCCATAGAATTAGAAATTG
*
8618366 ATTAGAT
1 AGTAGAT
8618373 TATTTAAGTG
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
39 44 1.00
ACGTcount: A:0.45, C:0.14, G:0.19, T:0.22
Consensus pattern (39 bp):
AGTAGATAATGACAACCCAAGCCATAGAATTAGAAATTG
Found at i:8621334 original size:21 final size:21
Alignment explanation
Indices: 8621308--8621349 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
8621298 AATGAATAAA
8621308 TCTTTAAGTTAACATTTGACT
1 TCTTTAAGTTAACATTTGACT
*
8621329 TCTTTAAGTTAATATTTGACT
1 TCTTTAAGTTAACATTTGACT
8621350 CGAAATTTGT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.29, C:0.12, G:0.10, T:0.50
Consensus pattern (21 bp):
TCTTTAAGTTAACATTTGACT
Found at i:8624462 original size:2 final size:2
Alignment explanation
Indices: 8624455--8624481 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
8624445 ATAATTTACC
8624455 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
8624482 TAAAAGAATA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:8625861 original size:2 final size:2
Alignment explanation
Indices: 8625854--8625879 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
8625844 AAAGAACATG
8625854 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
8625880 CCACCATTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:8629043 original size:15 final size:16
Alignment explanation
Indices: 8629012--8629067 Score: 51
Period size: 18 Copynumber: 3.3 Consensus size: 16
8629002 ATGATAGTAA
8629012 AATATACTAATAATAAT
1 AATATAC-AATAATAAT
*
8629029 AATAATAACAATAATAGT
1 AAT-AT-ACAATAATAAT
*
8629047 AA-ATAGAATAATAAAT
1 AATATACAATAAT-AAT
8629063 AATAT
1 AATAT
8629068 TTAAAATAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 8
0.74 0.07 0.19
Matches are distributed among these distances:
15 7 0.22
16 6 0.19
17 5 0.16
18 12 0.38
19 2 0.06
ACGTcount: A:0.62, C:0.04, G:0.04, T:0.30
Consensus pattern (16 bp):
AATATACAATAATAAT
Done.