Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr02 99090824
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 99090824
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 317 characters in sequence are not A, C, G, or T
File 310 of 318
Found at i:96513109 original size:16 final size:17
Alignment explanation
Indices: 96513073--96513109 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 17
96513063 AATTTTATTT
*
96513073 TAATAATAAATTTTAAA
1 TAATAATAAATCTTAAA
96513090 -AATAAT-AATCTTAAA
1 TAATAATAAATCTTAAA
96513105 TAATA
1 TAATA
96513110 TTATTCACAT
Statistics
Matches: 18, Mismatches: 1, Indels: 3
0.82 0.05 0.14
Matches are distributed among these distances:
15 8 0.44
16 10 0.56
ACGTcount: A:0.59, C:0.03, G:0.00, T:0.38
Consensus pattern (17 bp):
TAATAATAAATCTTAAA
Found at i:96513165 original size:15 final size:15
Alignment explanation
Indices: 96513145--96513201 Score: 60
Period size: 15 Copynumber: 3.5 Consensus size: 15
96513135 TTTCAATATT
96513145 AATATTTTAATAATA
1 AATATTTTAATAATA
*
96513160 AATATTTATTACAATTATA
1 AATA-TT-TT--AATAATA
*
96513179 AATATATTAATAATA
1 AATATTTTAATAATA
96513194 AATATTTT
1 AATATTTT
96513202 GTAGTATAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
15 17 0.50
16 2 0.06
17 4 0.12
18 1 0.03
19 10 0.29
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (15 bp):
AATATTTTAATAATA
Found at i:96514432 original size:25 final size:25
Alignment explanation
Indices: 96514404--96514454 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 25
96514394 TACAATGATG
96514404 AATGTATATAATTTGCAGTGCTCCT
1 AATGTATATAATTTGCAGTGCTCCT
* *
96514429 AATGTATATATTTTGCAGTTCTCCT
1 AATGTATATAATTTGCAGTGCTCCT
96514454 A
1 A
96514455 TCAATACATT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.27, C:0.16, G:0.14, T:0.43
Consensus pattern (25 bp):
AATGTATATAATTTGCAGTGCTCCT
Found at i:96515991 original size:22 final size:23
Alignment explanation
Indices: 96515955--96515997 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
96515945 CTTCTAATTC
*
96515955 AACCATGTAGAAACT-ACAAAAG
1 AACCATCTAGAAACTGACAAAAG
*
96515977 AACCATCTAGGAACTGACAAA
1 AACCATCTAGAAACTGACAAA
96515998 CAATCGCATA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 13 0.72
23 5 0.28
ACGTcount: A:0.51, C:0.21, G:0.14, T:0.14
Consensus pattern (23 bp):
AACCATCTAGAAACTGACAAAAG
Found at i:96520733 original size:154 final size:155
Alignment explanation
Indices: 96520251--96520989 Score: 659
Period size: 154 Copynumber: 4.7 Consensus size: 155
96520241 ATAGTACTTG
** * * * * * * * **
96520251 ATAAAACAGAATGATCAGAGTAACTTGATCATGAATTATATCTAATATTGACGCAAATAGAAAAC
1 ATAAAACAGAACCATCCGA-TAGCTTGATCATGAATTAAATCAAATAGTCATGCAAATAGATGAC
* ** *
96520316 AATGAAGAAGGTAAAATCCTATTTCAAGCCCTCAAACAAACTTATCTTCTATCTTATGTGGACCC
65 AATGAAGAAGGTAAAATCCTATTTCAAGTCCTCAAACAAGTTTATCTTCTATCTTAAGTGGACCC
* *
96520381 CTGATTCA-GGTACGTGTTTCTACTCA
130 ATGATT-AGGGTACATGTTTCTACTCA
* ** * * *
96520407 ATAAAA-TGAACCATTGGATAGCTTGATGATGAATTAAA-CTAATAGTCAAGTG-AAA-AGATAA
1 ATAAAACAGAACCATCCGATAGCTTGATCATGAATTAAATCAAATAGTC-A-TGCAAATAGATGA
* *
96520468 CAATGAAGAAGGAAAAAGCCTATTTCAAGTCCTCAAACAAGTTTATCTTCTTCTATCTTAAGTGG
64 CAATGAAGAAGGTAAAATCCTATTTCAAGTCCTCAAACAAGTTTA---TCTTCTATCTTAAGTGG
* * * *
96520533 ACTCTTGATTAGGGTACATGATTGTACTCA
126 ACCCATGATTAGGGTACATGTTTCTACTCA
* * * * * * *
96520563 ATAAAACAAAATCATCCGACTAGCTTGATCATTAATGAAATCAAATATTCATGCAAATAGGTGAT
1 ATAAAACAGAACCATCCGA-TAGCTTGATCATGAATTAAATCAAATAGTCATGCAAATAGATGAC
* * * *
96520628 GATGAAGAAGGTAAAATCCCATTTCAAGCCCTCAAACAAGTTTATC-T-TATCTTATGTGGACCC
65 AATGAAGAAGGTAAAATCCTATTTCAAGTCCTCAAACAAGTTTATCTTCTATCTTAAGTGGACCC
* * * *
96520691 ATAATTCA-AGTCCGTGTTTCTACTCA
130 ATGATT-AGGGTACATGTTTCTACTCA
* * ** *
96520717 ATAAAACAGAACCATCCGGATAGCTTGATAATGAATTAAATCTAATAGTCATGCGGAGAGATGAC
1 ATAAAACAGAACCATCC-GATAGCTTGATCATGAATTAAATCAAATAGTCATGCAAATAGATGAC
* * * * *
96520782 AATGAAAAAGGGAAAAGCCTATTGCAAGTCCTCAAACAAGTTTATCTTCTTCTACCTTAAGTGGA
65 AATGAAGAAGGTAAAATCCTATTTCAAGTCCTCAAACAAGTTTA---TCTTCTATCTTAAGTGGA
**** * *
96520847 TTTGTGATTAGGGTACATGTTTGTACTCG
127 CCCATGATTAGGGTACATGTTTCTACTCA
* ** * * * *
96520876 ATAAAACGGAACCATGCAAATAGCTAGATCATGAA-TAAATCAAATATTCATGCAAATAGGTGAT
1 ATAAAACAGAACCAT-CCGATAGCTTGATCATGAATTAAATCAAATAGTCATGCAAATAGATGAC
* * *
96520940 AATGAAGAAGGTAAATTCCCATTTCACGTCCTCAAACAAGTTTATCTTCT
65 AATGAAGAAGGTAAAATCCTATTTCAAGTCCTCAAACAAGTTTATCTTCT
96520990 TCTATCTTAC
Statistics
Matches: 463, Mismatches: 100, Indels: 41
0.77 0.17 0.07
Matches are distributed among these distances:
153 52 0.11
154 139 0.30
155 19 0.04
156 53 0.11
157 11 0.02
158 82 0.18
159 106 0.23
160 1 0.00
ACGTcount: A:0.38, C:0.17, G:0.16, T:0.29
Consensus pattern (155 bp):
ATAAAACAGAACCATCCGATAGCTTGATCATGAATTAAATCAAATAGTCATGCAAATAGATGACA
ATGAAGAAGGTAAAATCCTATTTCAAGTCCTCAAACAAGTTTATCTTCTATCTTAAGTGGACCCA
TGATTAGGGTACATGTTTCTACTCA
Found at i:96520947 original size:312 final size:310
Alignment explanation
Indices: 96520316--96520987 Score: 970
Period size: 312 Copynumber: 2.2 Consensus size: 310
96520306 AATAGAAAAC
* **
96520316 AATGAAGAAGGTAAAATCCTATTTCAAGCCCTCAAACAAACTTATCTTCTATCTTATGTGGACCC
1 AATGAAGAAGGTAAAATCCCATTTCAAGCCCTCAAACAAGTTTATC-T-TATCTTATGTGGACCC
* * * * * *
96520381 CTGATTCAGGTACGTGTTTCTACTCAATAAAATGAACCATTGGATAGCTTGATGATGAATTAAAC
64 ATAATTCAAGTACGTGTTTCTACTCAATAAAAAGAACCATCGGATAGCTTGATAATGAATTAAAC
* * *
96520446 TAATAGTCAAGTGAAAAGATAACAATGAAGAAGGAAAAAGCCTATTTCAAGTCCTCAAACAAGTT
129 TAATAGTCAAGCGAAAAGATAACAATGAAAAAGGAAAAAGCCTATTGCAAGTCCTCAAACAAGTT
* *
96520511 TATCTTCTTCTATCTTAAGTGGACTCTTGATTAGGGTACATGATTGTACTCAATAAAACAAAATC
194 TATCTTCTTCTACCTTAAGTGGACTCTTGATTAGGGTACATGATTGTACTCAATAAAACAAAACC
* * * *
96520576 ATCCGACTAGCTTGATCATTAATGAAATCAAATATTCATGCAAATAGGTGAT
259 ATCCAAATAGCTAGATCATGAATGAAATCAAATATTCATGCAAATAGGTGAT
*
96520628 GATGAAGAAGGTAAAATCCCATTTCAAGCCCTCAAACAAGTTTATCTTATCTTATGTGGACCCAT
1 AATGAAGAAGGTAAAATCCCATTTCAAGCCCTCAAACAAGTTTATCTTATCTTATGTGGACCCAT
*
96520693 AATTCAAGTCCGTGTTTCTACTCAATAAAACAGAACCATCCGGATAGCTTGATAATGAATTAAAT
66 AATTCAAGTACGTGTTTCTACTCAATAAAA-AGAACCAT-CGGATAGCTTGATAATGAATTAAA-
* * * * *
96520758 CTAATAGTCATGCGGAGAGATGACAATGAAAAAGGGAAAAGCCTATTGCAAGTCCTCAAACAAGT
128 CTAATAGTCAAGCGAAAAGATAACAATGAAAAAGGAAAAAGCCTATTGCAAGTCCTCAAACAAGT
* * * **
96520823 TTATCTTCTTCTACCTTAAGTGGA-TTTGTGATTAGGGTACATGTTTGTACTCGATAAAACGGAA
193 TTATCTTCTTCTACCTTAAGTGGACTCT-TGATTAGGGTACATGATTGTACTCAATAAAACAAAA
*
96520887 CCATGCAAATAGCTAGATCATGAAT-AAATCAAATATTCATGCAAATAGGTGAT
257 CCATCCAAATAGCTAGATCATGAATGAAATCAAATATTCATGCAAATAGGTGAT
* * *
96520940 AATGAAGAAGGTAAATTCCCATTTCACGTCCTCAAACAAGTTTATCTT
1 AATGAAGAAGGTAAAATCCCATTTCAAGCCCTCAAACAAGTTTATCTT
96520988 CTTCTATCTT
Statistics
Matches: 321, Mismatches: 35, Indels: 8
0.88 0.10 0.02
Matches are distributed among these distances:
310 44 0.14
311 8 0.02
312 138 0.43
313 131 0.41
ACGTcount: A:0.37, C:0.17, G:0.16, T:0.29
Consensus pattern (310 bp):
AATGAAGAAGGTAAAATCCCATTTCAAGCCCTCAAACAAGTTTATCTTATCTTATGTGGACCCAT
AATTCAAGTACGTGTTTCTACTCAATAAAAAGAACCATCGGATAGCTTGATAATGAATTAAACTA
ATAGTCAAGCGAAAAGATAACAATGAAAAAGGAAAAAGCCTATTGCAAGTCCTCAAACAAGTTTA
TCTTCTTCTACCTTAAGTGGACTCTTGATTAGGGTACATGATTGTACTCAATAAAACAAAACCAT
CCAAATAGCTAGATCATGAATGAAATCAAATATTCATGCAAATAGGTGAT
Found at i:96524362 original size:2 final size:2
Alignment explanation
Indices: 96524351--96524405 Score: 60
Period size: 2 Copynumber: 28.5 Consensus size: 2
96524341 ACATACAAAC
* * *
96524351 AT AT -T AT AT AT AT GT AT GT AT GT AT AT -T AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
*
96524391 AT AT AT GT AT AT AT A
1 AT AT AT AT AT AT AT A
96524406 ACCAGCTCAA
Statistics
Matches: 43, Mismatches: 8, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
1 2 0.05
2 41 0.95
ACGTcount: A:0.42, C:0.00, G:0.07, T:0.51
Consensus pattern (2 bp):
AT
Found at i:96524397 original size:25 final size:25
Alignment explanation
Indices: 96524355--96524402 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
96524345 ACAAACATAT
* *
96524355 TATATATATGTATGTATGTATATTA
1 TATATATATATATATATGTATATTA
96524380 TATATATATATATATATGTATAT
1 TATATATATATATATATGTATAT
96524403 ATAACCAGCT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.40, C:0.00, G:0.08, T:0.52
Consensus pattern (25 bp):
TATATATATATATATATGTATATTA
Found at i:96526022 original size:2 final size:2
Alignment explanation
Indices: 96526015--96526045 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
96526005 AAATCAAGCA
96526015 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
96526046 ACACTTCTTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:96530114 original size:29 final size:30
Alignment explanation
Indices: 96530079--96530142 Score: 94
Period size: 31 Copynumber: 2.1 Consensus size: 30
96530069 AACAAGCCAA
*
96530079 TGACTTAAAT-AAACTTTCGAATAGTTCAG
1 TGACTTAAATAAAACTTTCGAATAATTCAG
*
96530108 TGACTTAAATGAAAATTTTCGAATAATTCAG
1 TGACTTAAAT-AAAACTTTCGAATAATTCAG
96530139 TGAC
1 TGAC
96530143 CATTTTGTAA
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
29 10 0.32
31 21 0.68
ACGTcount: A:0.39, C:0.12, G:0.14, T:0.34
Consensus pattern (30 bp):
TGACTTAAATAAAACTTTCGAATAATTCAG
Found at i:96532158 original size:6 final size:6
Alignment explanation
Indices: 96532144--96532195 Score: 77
Period size: 6 Copynumber: 8.7 Consensus size: 6
96532134 CACCGAGTCG
* * *
96532144 GTTGCT GTTGTT GTTGTT GTTGCT GCTGCT GTTGCT GTTGCT GTTGCT
1 GTTGCT GTTGCT GTTGCT GTTGCT GTTGCT GTTGCT GTTGCT GTTGCT
96532192 GTTG
1 GTTG
96532196 TGGTTTCTGT
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
6 42 1.00
ACGTcount: A:0.00, C:0.13, G:0.35, T:0.52
Consensus pattern (6 bp):
GTTGCT
Found at i:96532167 original size:18 final size:18
Alignment explanation
Indices: 96532144--96532206 Score: 81
Period size: 18 Copynumber: 3.5 Consensus size: 18
96532134 CACCGAGTCG
*
96532144 GTTGCTGTTGTTGTTGTT
1 GTTGCTGTTGCTGTTGTT
* *
96532162 GTTGCTGCTGCTGTTGCT
1 GTTGCTGTTGCTGTTGTT
*
96532180 GTTGCTGTTGCTGTTGTG
1 GTTGCTGTTGCTGTTGTT
*
96532198 GTTTCTGTT
1 GTTGCTGTT
96532207 TCGTCACCGG
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
18 38 1.00
ACGTcount: A:0.00, C:0.13, G:0.33, T:0.54
Consensus pattern (18 bp):
GTTGCTGTTGCTGTTGTT
Found at i:96532977 original size:31 final size:29
Alignment explanation
Indices: 96532942--96533010 Score: 86
Period size: 31 Copynumber: 2.3 Consensus size: 29
96532932 TTAAAATCTG
* *
96532942 TATTTAGTCCCTGTACTTTGATTAATTTTAA
1 TATTTAGTCCCTATACTTGGA--AATTTTAA
96532973 TATTTAGTCCCTATACTTGGAAATTTTAA
1 TATTTAGTCCCTATACTTGGAAATTTTAA
*
96533002 -ATTTGGTCC
1 TATTTAGTCC
96533011 TCATATTTTC
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
28 8 0.23
29 8 0.23
31 19 0.54
ACGTcount: A:0.26, C:0.14, G:0.12, T:0.48
Consensus pattern (29 bp):
TATTTAGTCCCTATACTTGGAAATTTTAA
Found at i:96533939 original size:17 final size:18
Alignment explanation
Indices: 96533914--96533968 Score: 62
Period size: 16 Copynumber: 3.2 Consensus size: 18
96533904 TTATATATTA
96533914 TATTAAATTAACACATTT
1 TATTAAATTAACACATTT
**
96533932 TATT-AATT-ACAGTTTT
1 TATTAAATTAACACATTT
96533948 TATTAAATTAA-ACATGTT
1 TATTAAATTAACACAT-TT
96533966 TAT
1 TAT
96533969 CCAAACTAAT
Statistics
Matches: 30, Mismatches: 4, Indels: 6
0.75 0.10 0.15
Matches are distributed among these distances:
16 10 0.33
17 10 0.33
18 10 0.33
ACGTcount: A:0.40, C:0.07, G:0.04, T:0.49
Consensus pattern (18 bp):
TATTAAATTAACACATTT
Found at i:96537250 original size:2 final size:2
Alignment explanation
Indices: 96537204--96537234 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
96537194 ACTTAGCCAA
96537204 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
96537235 CCACAAACAC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:96537922 original size:48 final size:47
Alignment explanation
Indices: 96537807--96537974 Score: 185
Period size: 47 Copynumber: 3.5 Consensus size: 47
96537797 AATCGATAAG
* * ** *
96537807 TACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTTATCCCGGAGA
1 TACCTATACCATGGCCCGTAGCCAAATCAAGGTAAC-TCTCACTAAAA
* *
96537855 -ACCTATACCATGGTCCGTAGCAAAATCAAGGTAACTCCTCACTAAAA
1 TACCTATACCATGGCCCGTAGCCAAATCAAGGTAACT-CTCACTAAAA
*
96537902 TACCTATACCATGGCCCGTAGCCAAATCAAGGTATCACTCTCACCTAAAG
1 TACCTATACCATGGCCCGTAGCCAAATCAAGGTA--ACTCTCA-CTAAAA
* * *
96537952 TGCCTATATCATGGCCCGAAGCC
1 TACCTATACCATGGCCCGTAGCC
96537975 TACACAGTAG
Statistics
Matches: 102, Mismatches: 13, Indels: 8
0.83 0.11 0.07
Matches are distributed among these distances:
46 1 0.01
47 38 0.37
48 31 0.30
49 4 0.04
50 28 0.27
ACGTcount: A:0.32, C:0.30, G:0.16, T:0.21
Consensus pattern (47 bp):
TACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTCTCACTAAAA
Found at i:96546838 original size:31 final size:31
Alignment explanation
Indices: 96546803--96546865 Score: 126
Period size: 31 Copynumber: 2.0 Consensus size: 31
96546793 CTAGTCCTTT
96546803 GAATGAGTTTAGGCCTATTAGCCTTAATTAG
1 GAATGAGTTTAGGCCTATTAGCCTTAATTAG
96546834 GAATGAGTTTAGGCCTATTAGCCTTAATTAG
1 GAATGAGTTTAGGCCTATTAGCCTTAATTAG
96546865 G
1 G
96546866 GTGCTGTAAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.29, C:0.13, G:0.24, T:0.35
Consensus pattern (31 bp):
GAATGAGTTTAGGCCTATTAGCCTTAATTAG
Found at i:96548630 original size:52 final size:51
Alignment explanation
Indices: 96548562--96548662 Score: 184
Period size: 52 Copynumber: 2.0 Consensus size: 51
96548552 TCAATTAAGT
96548562 AAAAAATAAATAAATTTAAGTATCAACTAGATACTTTTAGACAAATTCAAA
1 AAAAAATAAATAAATTTAAGTATCAACTAGATACTTTTAGACAAATTCAAA
*
96548613 AAAATAATAAATAAATTTAAGTATCAATTAGATACTTTTAGACAAATTCA
1 AAAA-AATAAATAAATTTAAGTATCAACTAGATACTTTTAGACAAATTCA
96548663 GAGGCCAAAT
Statistics
Matches: 48, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
51 4 0.08
52 44 0.92
ACGTcount: A:0.53, C:0.09, G:0.06, T:0.32
Consensus pattern (51 bp):
AAAAAATAAATAAATTTAAGTATCAACTAGATACTTTTAGACAAATTCAAA
Found at i:96549120 original size:66 final size:66
Alignment explanation
Indices: 96549037--96549167 Score: 208
Period size: 66 Copynumber: 2.0 Consensus size: 66
96549027 CATTTTTTCA
* * *
96549037 ACTATGATTTAGATTCTAATTTGATTATAAATTTTAAAGAATTTTAACCGAGTCTTCAATGTATC
1 ACTATGATTCAGATTCTAATTTGATCACAAATTTTAAAGAATTTTAACCGAGTCTTCAATGTATC
96549102 T
66 T
* * *
96549103 ACTATGATTCAGATTCTAATTTGATCCCAAATTTTAAAGAATTTTAATCGAGTCTTTAATGTATC
1 ACTATGATTCAGATTCTAATTTGATCACAAATTTTAAAGAATTTTAACCGAGTCTTCAATGTATC
96549168 AATATCTTTA
Statistics
Matches: 59, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
66 59 1.00
ACGTcount: A:0.34, C:0.12, G:0.11, T:0.43
Consensus pattern (66 bp):
ACTATGATTCAGATTCTAATTTGATCACAAATTTTAAAGAATTTTAACCGAGTCTTCAATGTATC
T
Found at i:96561523 original size:22 final size:21
Alignment explanation
Indices: 96561498--96561538 Score: 64
Period size: 22 Copynumber: 1.9 Consensus size: 21
96561488 CTTGCGTTTG
*
96561498 TTCATTTTTTCACTCTATTTTC
1 TTCATTCTTTCACT-TATTTTC
96561520 TTCATTCTTTCACTTATTT
1 TTCATTCTTTCACTTATTT
96561539 CATGATATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 5 0.28
22 13 0.72
ACGTcount: A:0.15, C:0.22, G:0.00, T:0.63
Consensus pattern (21 bp):
TTCATTCTTTCACTTATTTTC
Found at i:96562950 original size:26 final size:26
Alignment explanation
Indices: 96562921--96562970 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
96562911 GACCAATTCC
*
96562921 TATAAACATTTCACACAACCATTTTG
1 TATAAACAATTCACACAACCATTTTG
* * *
96562947 TATAACCAATTCATATAACCATTT
1 TATAAACAATTCACACAACCATTT
96562971 GTCATCTGGT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 20 1.00
ACGTcount: A:0.40, C:0.22, G:0.02, T:0.36
Consensus pattern (26 bp):
TATAAACAATTCACACAACCATTTTG
Found at i:96562953 original size:13 final size:13
Alignment explanation
Indices: 96562901--96562970 Score: 50
Period size: 13 Copynumber: 5.3 Consensus size: 13
96562891 TTGTACATAT
*
96562901 ATTTCCATATGACC
1 ATTT-CATATAACC
* * *
96562915 AATTCCTATAAAC
1 ATTTCATATAACC
* *
96562928 ATTTCACACAACC
1 ATTTCATATAACC
**
96562941 ATTTTGTATAACC
1 ATTTCATATAACC
*
96562954 AATTCATATAACC
1 ATTTCATATAACC
96562967 ATTT
1 ATTT
96562971 GTCATCTGGT
Statistics
Matches: 39, Mismatches: 17, Indels: 1
0.68 0.30 0.02
Matches are distributed among these distances:
13 36 0.92
14 3 0.08
ACGTcount: A:0.37, C:0.24, G:0.03, T:0.36
Consensus pattern (13 bp):
ATTTCATATAACC
Found at i:96563629 original size:23 final size:24
Alignment explanation
Indices: 96563598--96563648 Score: 68
Period size: 23 Copynumber: 2.2 Consensus size: 24
96563588 AAGTTCAAGC
*
96563598 GAGCACTATCAGGAGGCTCACAAA
1 GAGCACTATCAGGAAGCTCACAAA
* *
96563622 GAGC-CTATCGGGAAGCTCACGAA
1 GAGCACTATCAGGAAGCTCACAAA
96563645 GAGC
1 GAGC
96563649 TGTATTTTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
23 20 0.83
24 4 0.17
ACGTcount: A:0.33, C:0.25, G:0.29, T:0.12
Consensus pattern (24 bp):
GAGCACTATCAGGAAGCTCACAAA
Found at i:96565748 original size:18 final size:18
Alignment explanation
Indices: 96565700--96565748 Score: 53
Period size: 21 Copynumber: 2.5 Consensus size: 18
96565690 ATAATATAAT
96565700 TATTTAATTAATAAATATC
1 TATTTAA-TAATAAATATC
*
96565719 TTTTATAAAATAATAAATATC
1 TATT-T--AATAATAAATATC
96565740 TATTTAATA
1 TATTTAATA
96565749 TCTAATACAT
Statistics
Matches: 25, Mismatches: 2, Indels: 7
0.74 0.06 0.21
Matches are distributed among these distances:
18 4 0.16
19 3 0.12
20 2 0.08
21 14 0.56
22 2 0.08
ACGTcount: A:0.49, C:0.04, G:0.00, T:0.47
Consensus pattern (18 bp):
TATTTAATAATAAATATC
Found at i:96567468 original size:22 final size:22
Alignment explanation
Indices: 96567422--96567468 Score: 60
Period size: 21 Copynumber: 2.1 Consensus size: 22
96567412 TATTAGATAT
**
96567422 TAAATAGATATTTATTATTTTA
1 TAAATAGATATTTATTATTAAA
96567444 TAAA-AGATATTTATTAATTAAA
1 TAAATAGATATTTATT-ATTAAA
96567466 TAA
1 TAA
96567469 TTATATTATA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 11 0.50
22 11 0.50
ACGTcount: A:0.49, C:0.00, G:0.04, T:0.47
Consensus pattern (22 bp):
TAAATAGATATTTATTATTAAA
Found at i:96567605 original size:6 final size:6
Alignment explanation
Indices: 96567586--96567651 Score: 96
Period size: 6 Copynumber: 11.0 Consensus size: 6
96567576 AACTATTTAA
* * * *
96567586 ATATAA ATACAT ATGTAT ATATGT ATATAT ATATAT ATATAT ATATAT
1 ATATAT ATATAT ATATAT ATATAT ATATAT ATATAT ATATAT ATATAT
96567634 ATATAT ATATAT ATATAT
1 ATATAT ATATAT ATATAT
96567652 GAAAAGAAAG
Statistics
Matches: 53, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
6 53 1.00
ACGTcount: A:0.48, C:0.02, G:0.03, T:0.47
Consensus pattern (6 bp):
ATATAT
Found at i:96567618 original size:4 final size:4
Alignment explanation
Indices: 96567586--96567651 Score: 96
Period size: 4 Copynumber: 16.5 Consensus size: 4
96567576 AACTATTTAA
* * * *
96567586 ATAT AAAT ACAT ATGT ATAT ATGT ATAT ATAT ATAT ATAT ATAT ATAT
1 ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT
96567634 ATAT ATAT ATAT ATAT AT
1 ATAT ATAT ATAT ATAT AT
96567652 GAAAAGAAAG
Statistics
Matches: 55, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
4 55 1.00
ACGTcount: A:0.48, C:0.02, G:0.03, T:0.47
Consensus pattern (4 bp):
ATAT
Found at i:96580110 original size:46 final size:46
Alignment explanation
Indices: 96580060--96580273 Score: 252
Period size: 46 Copynumber: 4.6 Consensus size: 46
96580050 GCTCTCTGAT
* * *
96580060 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTAAT
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATAAC
* * * *
96580106 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGCGTGAC
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATAAC
* *
96580152 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATAAC
* * * * *
96580198 GA-GAAAATGAATAAGAACATGGTTGAAAGATACCACGGCAATATGAC
1 -ATG-AAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATAAC
*
96580245 A-GAAAATGAGTAAGACCATAGTTGAAAGA
1 ATG-AAATGAGTAAGACCATGGTTGAAAGA
96580274 CAATATAGCA
Statistics
Matches: 152, Mismatches: 14, Indels: 4
0.89 0.08 0.02
Matches are distributed among these distances:
46 111 0.73
47 41 0.27
ACGTcount: A:0.43, C:0.14, G:0.24, T:0.20
Consensus pattern (46 bp):
ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATAAC
Found at i:96580252 original size:93 final size:92
Alignment explanation
Indices: 96580060--96580273 Score: 261
Period size: 93 Copynumber: 2.3 Consensus size: 92
96580050 GCTCTCTGAT
** * * ** *
96580060 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTAATATGAAATGTGTAAGACCAT
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATAAGATGAAATGAATAAGAACAT
* * *
96580125 GGTTGAAAGATACCATGGCAGCGTGAC
66 GGTTGAAAGATACCACGGCAACATGAC
*
96580152 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACGA-GAAAATGAATAAGAAC
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACAT-AAGATG-AAATGAATAAGAAC
*
96580216 ATGGTTGAAAGATACCACGGCAATATGAC
64 ATGGTTGAAAGATACCACGGCAACATGAC
* *
96580245 A-GAAAATGAGTAAGACCATAGTTGAAAGA
1 ATG-AAATGAATAAGACCATGGTTGAAAGA
96580274 CAATATAGCA
Statistics
Matches: 105, Mismatches: 14, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
92 42 0.40
93 63 0.60
ACGTcount: A:0.43, C:0.14, G:0.24, T:0.20
Consensus pattern (92 bp):
ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATAAGATGAAATGAATAAGAACAT
GGTTGAAAGATACCACGGCAACATGAC
Found at i:96580590 original size:16 final size:17
Alignment explanation
Indices: 96580569--96580601 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
96580559 ATGATGGAGC
96580569 ATGAAAT-ATTGATATA
1 ATGAAATGATTGATATA
96580585 ATGAAATGATTGATATA
1 ATGAAATGATTGATATA
96580602 TACTTATGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.48, C:0.00, G:0.15, T:0.36
Consensus pattern (17 bp):
ATGAAATGATTGATATA
Found at i:96582438 original size:46 final size:46
Alignment explanation
Indices: 96582363--96582544 Score: 233
Period size: 46 Copynumber: 4.0 Consensus size: 46
96582353 TTATCTTCGA
* * * *
96582363 CATGATGCCATAGTATCTTTCAACTATGGTCTTACTCGTTTTC-TAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTC-ATTTCATAT
* *
96582409 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATAT
* *
96582455 CACGTTGCCATGGTATCTTTCAACTATGGTCTTACAT-ATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTAC-TCATTTCATAT
* **
96582501 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTAGACATTTCAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCAT
96582545 TTCAGAGAGC
Statistics
Matches: 119, Mismatches: 14, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
45 4 0.03
46 114 0.96
47 1 0.01
ACGTcount: A:0.22, C:0.22, G:0.15, T:0.41
Consensus pattern (46 bp):
CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATAT
Found at i:96582525 original size:92 final size:91
Alignment explanation
Indices: 96582368--96582544 Score: 275
Period size: 92 Copynumber: 1.9 Consensus size: 91
96582358 TTCGACATGA
* *
96582368 TGCCATAGTATCTTTCAACTATGGTCTTACTCGTTTTCTATCATGTTGCCATGGTATCTTTCAAC
1 TGCCATAGTATCTTTCAACTATGGTCTTACTC-ATTTCTATCAGGTTGCCATGGTATCTTTCAAC
**
96582433 CATGGTCTTATTCATTTCATGTCACGT
65 CATGGTCTTAGACATTTCATGTCACGT
*
96582460 TGCCATGGTATCTTTCAACTATGGTCTTACAT-ATTTCATATCAGGTTGCCATGGTATCTTTCAA
1 TGCCATAGTATCTTTCAACTATGGTCTTAC-TCATTTC-TATCAGGTTGCCATGGTATCTTTCAA
96582524 CCATGGTCTTAGACATTTCAT
64 CCATGGTCTTAGACATTTCAT
96582545 TTCAGAGAGC
Statistics
Matches: 78, Mismatches: 5, Indels: 4
0.90 0.06 0.05
Matches are distributed among these distances:
91 4 0.05
92 73 0.94
93 1 0.01
ACGTcount: A:0.21, C:0.22, G:0.15, T:0.42
Consensus pattern (91 bp):
TGCCATAGTATCTTTCAACTATGGTCTTACTCATTTCTATCAGGTTGCCATGGTATCTTTCAACC
ATGGTCTTAGACATTTCATGTCACGT
Found at i:96582953 original size:24 final size:23
Alignment explanation
Indices: 96582921--96582969 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 23
96582911 ATCAGGTAGT
*
96582921 TCACAAAGAACCATATCGTGAAGC
1 TCACAAAGAACC-TATCGGGAAGC
* *
96582945 TCACGAAGAGCCTATCGGGAAGC
1 TCACAAAGAACCTATCGGGAAGC
96582968 TC
1 TC
96582970 CGGATCGCCA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
23 12 0.55
24 10 0.45
ACGTcount: A:0.35, C:0.27, G:0.22, T:0.16
Consensus pattern (23 bp):
TCACAAAGAACCTATCGGGAAGC
Found at i:96582966 original size:23 final size:23
Alignment explanation
Indices: 96582934--96583048 Score: 81
Period size: 23 Copynumber: 4.9 Consensus size: 23
96582924 CAAAGAACCA
*
96582934 TATCGTGAAGCTCACGAAGAGCC
1 TATCGGGAAGCTCACGAAGAGCC
* **
96582957 TATCGGGAAGCTC-CGGATCGCC
1 TATCGGGAAGCTCACGAAGAGCC
* * *
96582979 ATATATCGGGAAGTTCAAG-CGAGCAC
1 ---TATCGGGAAGCTCACGAAGAGC-C
* * *
96583005 TATCAGGAGGCTCACAAAGAGCC
1 TATCGGGAAGCTCACGAAGAGCC
*
96583028 TATCAGGAAGCTCACGAAGAG
1 TATCGGGAAGCTCACGAAGAG
96583049 ATGTATTTCG
Statistics
Matches: 69, Mismatches: 17, Indels: 12
0.70 0.17 0.12
Matches are distributed among these distances:
22 6 0.09
23 43 0.62
24 4 0.06
25 14 0.20
26 2 0.03
ACGTcount: A:0.31, C:0.24, G:0.28, T:0.17
Consensus pattern (23 bp):
TATCGGGAAGCTCACGAAGAGCC
Found at i:96586990 original size:26 final size:26
Alignment explanation
Indices: 96586954--96587063 Score: 184
Period size: 26 Copynumber: 4.2 Consensus size: 26
96586944 TGATACAAAT
96586954 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
96586980 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
96587006 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
96587032 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
96587058 TGATAA
1 TGATAA
96587064 GAATTTCATG
Statistics
Matches: 82, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 82 1.00
ACGTcount: A:0.34, C:0.05, G:0.25, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:96588671 original size:27 final size:27
Alignment explanation
Indices: 96588617--96588755 Score: 174
Period size: 27 Copynumber: 5.2 Consensus size: 27
96588607 GAGGAAGCGT
*
96588617 TCTGGTGGCTATGCCA-AAATATCTGA
1 TCTGGTGGCTCTGCCACAAATATCTGA
96588643 TCTGGTGGCTCTGCCACAAATATCTGA
1 TCTGGTGGCTCTGCCACAAATATCTGA
* *
96588670 TCTGGTGGCTCTGCCACATATATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
* *
96588697 TCTGGTGGCTCTGCCACGATTATCTGTA
1 TCTGGTGGCTCTGCCACAAATATCTG-A
* * * *
96588725 TCTGGTGACTCTGTCAC-ATTATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
96588751 TCTGG
1 TCTGG
96588756 CAGCCATGCT
Statistics
Matches: 101, Mismatches: 10, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
26 20 0.20
27 66 0.65
28 15 0.15
ACGTcount: A:0.18, C:0.24, G:0.23, T:0.35
Consensus pattern (27 bp):
TCTGGTGGCTCTGCCACAAATATCTGA
Found at i:96588704 original size:54 final size:55
Alignment explanation
Indices: 96588617--96588755 Score: 194
Period size: 54 Copynumber: 2.6 Consensus size: 55
96588607 GAGGAAGCGT
* * *
96588617 TCTGGTGGCTATGCCA-AAATATCTGATCTGGTGGCTCTGCCACAAATATCTG-A
1 TCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCTCTGCCACAAATATCTGTA
* *
96588670 TCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCTCTGCCACGATTATCTGTA
1 TCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCTCTGCCACAAATATCTGTA
* *
96588725 TCTGGTGACTCTGTCACAT-TATCTGTTCTGG
1 TCTGGTGGCTCTGCCACATATATCTGTTCTGG
96588756 CAGCCATGCT
Statistics
Matches: 77, Mismatches: 7, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
53 15 0.19
54 44 0.57
55 18 0.23
ACGTcount: A:0.18, C:0.24, G:0.23, T:0.35
Consensus pattern (55 bp):
TCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCTCTGCCACAAATATCTGTA
Found at i:96592759 original size:26 final size:26
Alignment explanation
Indices: 96592723--96592832 Score: 184
Period size: 26 Copynumber: 4.2 Consensus size: 26
96592713 TGATACAAAT
96592723 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
96592749 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
96592775 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
96592801 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
96592827 TGATAA
1 TGATAA
96592833 GAATTTCATG
Statistics
Matches: 82, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 82 1.00
ACGTcount: A:0.34, C:0.05, G:0.25, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:96594428 original size:27 final size:27
Alignment explanation
Indices: 96594387--96594524 Score: 165
Period size: 27 Copynumber: 5.2 Consensus size: 27
96594377 GAGGAAGCGT
*
96594387 TCTGGTGGCTATGCCACAAATATCTGA
1 TCTGGTGGCTCTGCCACAAATATCTGA
96594414 TCTGGTGGCTCTGCCACAAATATCTGA
1 TCTGGTGGCTCTGCCACAAATATCTGA
* *
96594441 TCTGGTGGCTCTGCCACATATAT-TGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
* *
96594467 TCTGGTGGCT-TGCCACGATTATCTGTA
1 TCTGGTGGCTCTGCCACAAATATCTG-A
* * * *
96594494 TCTGGTGACTCTGTCAC-ATTATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
96594520 TCTGG
1 TCTGG
96594525 CAGCCATGCT
Statistics
Matches: 98, Mismatches: 10, Indels: 7
0.85 0.09 0.06
Matches are distributed among these distances:
25 9 0.09
26 19 0.19
27 65 0.66
28 5 0.05
ACGTcount: A:0.18, C:0.23, G:0.23, T:0.36
Consensus pattern (27 bp):
TCTGGTGGCTCTGCCACAAATATCTGA
Found at i:96594498 original size:53 final size:54
Alignment explanation
Indices: 96594387--96594524 Score: 183
Period size: 53 Copynumber: 2.6 Consensus size: 54
96594377 GAGGAAGCGT
* * *
96594387 TCTGGTGGCTATGCCACAAATATCTGATCTGGTGGCTCTGCCACAAATATCTGA
1 TCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCTCTGCCACAAATATCTGA
* *
96594441 TCTGGTGGCTCTGCCACATATAT-TGTTCTGGTGGCT-TGCCACGATTATCTGTA
1 TCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCTCTGCCACAAATATCTG-A
* *
96594494 TCTGGTGACTCTGTCACAT-TATCTGTTCTGG
1 TCTGGTGGCTCTGCCACATATATCTGTTCTGG
96594525 CAGCCATGCT
Statistics
Matches: 75, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
52 16 0.21
53 38 0.51
54 21 0.28
ACGTcount: A:0.18, C:0.23, G:0.23, T:0.36
Consensus pattern (54 bp):
TCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCTCTGCCACAAATATCTGA
Found at i:96595693 original size:18 final size:18
Alignment explanation
Indices: 96595657--96595722 Score: 98
Period size: 17 Copynumber: 3.7 Consensus size: 18
96595647 AATCATATCT
*
96595657 TCTAAGATTGTATATCATA
1 TCTAAGATTGCA-ATCATA
96595676 TCTAAGATTGCAATCATA
1 TCTAAGATTGCAATCATA
*
96595694 TCTAAGATTG-TATCATA
1 TCTAAGATTGCAATCATA
96595711 TCTAAGATTGCA
1 TCTAAGATTGCA
96595723 TATTATTGAA
Statistics
Matches: 43, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
17 16 0.37
18 16 0.37
19 11 0.26
ACGTcount: A:0.36, C:0.14, G:0.12, T:0.38
Consensus pattern (18 bp):
TCTAAGATTGCAATCATA
Found at i:96596333 original size:83 final size:83
Alignment explanation
Indices: 96596113--96596548 Score: 737
Period size: 83 Copynumber: 5.2 Consensus size: 83
96596103 TTCGATTTGT
* * * *
96596113 AAGGATGTCAAATCATCTTGAGTCTGTTTGAGAACATTTGAGAATCATATCTGCAAGGTCCTCGA
1 AAGGATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGA
*
96596178 CTTGTTCCTTGTAAGCAC
66 TTTGTTCCTTGTAAGCAC
* * *
96596196 AAGGATGCTTAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATGTCTGCAAGGTCCTCG
1 AAGGATGC-CAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCG
96596261 ATTTGTTCCTTGTAAGCAC
65 ATTTGTTCCTTGTAAGCAC
*
96596280 AAGGATGCCAAACCATCTTGAGTCTATTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGA
1 AAGGATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGA
*
96596345 TTTGTTCCTTGTAAGTAC
66 TTTGTTCCTTGTAAGCAC
* *
96596363 AAGGATGCCAAACCATCTTCAGTCTGTTTGAGAACATTTGAGAGTCATATCTGTAATGTCCTCGA
1 AAGGATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGA
96596428 TTTGTTCCTTGTAAGCAC
66 TTTGTTCCTTGTAAGCAC
96596446 AAGGATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGA
1 AAGGATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGA
*
96596511 TTTGTTCCTTGTAAGCAG
66 TTTGTTCCTTGTAAGCAC
*
96596529 AAGGACGCCAAACCATCTTG
1 AAGGATGCCAAACCATCTTG
96596549 GATCTGCTTC
Statistics
Matches: 333, Mismatches: 19, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
83 255 0.77
84 78 0.23
ACGTcount: A:0.27, C:0.20, G:0.21, T:0.32
Consensus pattern (83 bp):
AAGGATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGA
TTTGTTCCTTGTAAGCAC
Found at i:96597068 original size:119 final size:119
Alignment explanation
Indices: 96596472--96597065 Score: 1026
Period size: 119 Copynumber: 5.0 Consensus size: 119
96596462 CTTGAGTCTG
* * * * * * * *
96596472 TTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTAAGCAGAAGGACGC
1 TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATGC
*
96596537 CAAACCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATA
66 CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATA
* * *
96596591 TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTTGATTTGTTTCTTGTAAACACAAGAATAC
1 TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATGC
*
96596656 CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGTTATA
66 CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATA
*
96596710 TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATAC
1 TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATGC
96596775 CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATA
66 CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATA
*
96596829 TTTGAGAACGTCTGAGGGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATGC
1 TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATGC
* *
96596894 CAAATCATCTTGGATCTGCTTCAGTATAAACATCTAAAGGTTAGATCTGCTATC
66 CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATA
96596948 TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATGC
1 TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATGC
*
96597013 CAAATCATCTTGGATCTGCTTCAGTATAAACATATGAAGGTTAGATCTGCTAT
66 CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTAT
96597066 CTTCGATCTG
Statistics
Matches: 452, Mismatches: 23, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
119 452 1.00
ACGTcount: A:0.29, C:0.19, G:0.19, T:0.33
Consensus pattern (119 bp):
TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATGC
CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATA
Found at i:96597103 original size:44 final size:44
Alignment explanation
Indices: 96597057--96597236 Score: 161
Period size: 44 Copynumber: 4.1 Consensus size: 44
96597047 TGAAGGTTAG
*
96597057 ATCTGCTATCTTCGATCTGTTCCCTATAAACACAGGGATGCCAG
1 ATCTGCTATCTTCGATCTGTTCCCTATAAACACAGGGATGCCAA
*
96597101 ATCTGCTATCTTC-AACTTGTTCCCTATAAACACAGGGATGCC--
1 ATCTGCTATCTTCGATC-TGTTCCCTATAAACACAGGGATGCCAA
** * * * * ** * * *
96597143 ATGCTGAAATCTTCAATCTACTTCGC-AGAGAGTACAAGAATGTCAA
1 AT-CTGCTATCTTCGATCT-GTTCCCTATA-AACACAGGGATGCCAA
* *
96597189 ATCTACTATCTTCGATCTGTTCCCTATAAACATAGGGATGCCAA
1 ATCTGCTATCTTCGATCTGTTCCCTATAAACACAGGGATGCCAA
96597233 ATCT
1 ATCT
96597237 TGTTTCTTTG
Statistics
Matches: 103, Mismatches: 25, Indels: 16
0.72 0.17 0.11
Matches are distributed among these distances:
42 2 0.02
43 14 0.14
44 71 0.69
45 14 0.14
46 2 0.02
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.30
Consensus pattern (44 bp):
ATCTGCTATCTTCGATCTGTTCCCTATAAACACAGGGATGCCAA
Found at i:96598129 original size:9 final size:9
Alignment explanation
Indices: 96598115--96598165 Score: 50
Period size: 9 Copynumber: 5.4 Consensus size: 9
96598105 GGCGTCTCCA
96598115 TTTTTTTTC
1 TTTTTTTTC
*
96598124 TTTTTTCTC
1 TTTTTTTTC
96598133 TTTATTTTT-
1 TTT-TTTTTC
96598142 TTCTCTTTTTC
1 TT-T-TTTTTC
*
96598153 TTTTCTTTC
1 TTTTTTTTC
96598162 TTTT
1 TTTT
96598166 CTCTTTTTTT
Statistics
Matches: 35, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
9 22 0.63
10 11 0.31
11 2 0.06
ACGTcount: A:0.02, C:0.16, G:0.00, T:0.82
Consensus pattern (9 bp):
TTTTTTTTC
Found at i:96598139 original size:22 final size:21
Alignment explanation
Indices: 96598114--96598174 Score: 70
Period size: 21 Copynumber: 2.8 Consensus size: 21
96598104 TGGCGTCTCC
96598114 ATTTTTTTTCTTTTTTCTCTTT
1 ATTTTTTTTCTTTTTTCT-TTT
96598136 A-TTTTTTTCTCTTTTTCTTTT
1 ATTTTTTTTCT-TTTTTCTTTT
*
96598157 CTTTCTTTTCTCTTTTTT
1 ATTT-TTTT-TCTTTTTT
96598175 TTTGAAATAG
Statistics
Matches: 34, Mismatches: 1, Indels: 7
0.81 0.02 0.17
Matches are distributed among these distances:
21 12 0.35
22 10 0.29
23 9 0.26
24 3 0.09
ACGTcount: A:0.03, C:0.16, G:0.00, T:0.80
Consensus pattern (21 bp):
ATTTTTTTTCTTTTTTCTTTT
Found at i:96598143 original size:14 final size:13
Alignment explanation
Indices: 96598119--96598177 Score: 54
Period size: 14 Copynumber: 4.7 Consensus size: 13
96598109 TCTCCATTTT
96598119 TTTTCTTTTTTCTC
1 TTTT-TTTTTTCTC
96598133 TTTATTTTTTTCTC
1 TTT-TTTTTTTCTC
*
96598147 -TTTTTCTTT-TC
1 TTTTTTTTTTCTC
*
96598158 --TTTCTTTTCTC
1 TTTTTTTTTTCTC
96598169 TTTTTTTTT
1 TTTTTTTTT
96598178 GAAATAGAAG
Statistics
Matches: 37, Mismatches: 4, Indels: 9
0.74 0.08 0.18
Matches are distributed among these distances:
10 6 0.16
11 4 0.11
12 6 0.16
13 8 0.22
14 12 0.32
15 1 0.03
ACGTcount: A:0.02, C:0.17, G:0.00, T:0.81
Consensus pattern (13 bp):
TTTTTTTTTTCTC
Found at i:96598166 original size:9 final size:9
Alignment explanation
Indices: 96598119--96598167 Score: 50
Period size: 8 Copynumber: 5.7 Consensus size: 9
96598109 TCTCCATTTT
96598119 TTTTCTTT-
1 TTTTCTTTC
*
96598127 TTTCTCTTTA
1 TTT-TCTTTC
96598137 TTTT-TTTC
1 TTTTCTTTC
*
96598145 TCTT-TTTC
1 TTTTCTTTC
96598153 TTTTCTTTC
1 TTTTCTTTC
96598162 TTTTCT
1 TTTTCT
96598168 CTTTTTTTTT
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
8 16 0.46
9 16 0.46
10 3 0.09
ACGTcount: A:0.02, C:0.18, G:0.00, T:0.80
Consensus pattern (9 bp):
TTTTCTTTC
Found at i:96600817 original size:14 final size:14
Alignment explanation
Indices: 96600798--96600824 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
96600788 TCGACTTAAT
96600798 TTTATTTAGAAAAC
1 TTTATTTAGAAAAC
96600812 TTTATTTAGAAAA
1 TTTATTTAGAAAA
96600825 AGAATATCTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.44, C:0.04, G:0.07, T:0.44
Consensus pattern (14 bp):
TTTATTTAGAAAAC
Found at i:96603928 original size:19 final size:19
Alignment explanation
Indices: 96603906--96603955 Score: 55
Period size: 19 Copynumber: 2.6 Consensus size: 19
96603896 AGATGAGCAT
* * *
96603906 ATAAAAAATATGATATTTA
1 ATAAAAAATATAAAATATA
* *
96603925 ATAATAAATTTAAAATATA
1 ATAAAAAATATAAAATATA
96603944 ATAAAAAATATA
1 ATAAAAAATATA
96603956 TTTATAAGAA
Statistics
Matches: 24, Mismatches: 7, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.34
Consensus pattern (19 bp):
ATAAAAAATATAAAATATA
Found at i:96603985 original size:15 final size:15
Alignment explanation
Indices: 96603944--96603987 Score: 54
Period size: 17 Copynumber: 2.8 Consensus size: 15
96603934 TTAAAATATA
96603944 ATAAAAAATATATTT
1 ATAAAAAATATATTT
96603959 ATAAGAATAATA-ATTAT
1 ATAA-AA-AATATATT-T
96603976 ATAAAAAATATA
1 ATAAAAAATATA
96603988 AAATATATTG
Statistics
Matches: 25, Mismatches: 0, Indels: 7
0.78 0.00 0.22
Matches are distributed among these distances:
15 8 0.32
16 8 0.32
17 9 0.36
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.34
Consensus pattern (15 bp):
ATAAAAAATATATTT
Found at i:96604514 original size:17 final size:18
Alignment explanation
Indices: 96604461--96604532 Score: 103
Period size: 19 Copynumber: 3.9 Consensus size: 18
96604451 AATCATATCT
96604461 TCTAAGATTGTATATCATA
1 TCTAAGATTG-ATATCATA
96604480 TCTAAGATTGCA-ATCATA
1 TCTAAGATTG-ATATCATA
96604498 TCTAAGATTG-TATCATA
1 TCTAAGATTGATATCATA
96604515 TCTAAGATTGCATATCAT
1 TCTAAGATTG-ATATCAT
96604533 TGAAGATTAT
Statistics
Matches: 49, Mismatches: 1, Indels: 6
0.88 0.02 0.11
Matches are distributed among these distances:
17 16 0.33
18 16 0.33
19 17 0.35
ACGTcount: A:0.36, C:0.14, G:0.11, T:0.39
Consensus pattern (18 bp):
TCTAAGATTGATATCATA
Found at i:96604519 original size:35 final size:37
Alignment explanation
Indices: 96604454--96604532 Score: 121
Period size: 35 Copynumber: 2.2 Consensus size: 37
96604444 ATTACAAAAT
96604454 CATATC-T-TCTAAGATTGTATATCATATCTAAGATTG
1 CATATCATATCTAAGATTG-ATATCATATCTAAGATTG
96604490 CA-ATCATATCTAAGATTG-TATCATATCTAAGATTG
1 CATATCATATCTAAGATTGATATCATATCTAAGATTG
96604525 CATATCAT
1 CATATCAT
96604533 TGAAGATTAT
Statistics
Matches: 40, Mismatches: 0, Indels: 6
0.87 0.00 0.13
Matches are distributed among these distances:
35 22 0.55
36 8 0.20
37 10 0.25
ACGTcount: A:0.35, C:0.15, G:0.10, T:0.39
Consensus pattern (37 bp):
CATATCATATCTAAGATTGATATCATATCTAAGATTG
Found at i:96604530 original size:14 final size:15
Alignment explanation
Indices: 96604475--96604530 Score: 60
Period size: 17 Copynumber: 3.5 Consensus size: 15
96604465 AGATTGTATA
96604475 TCATATCTAAGATTG
1 TCATATCTAAGATTG
96604490 CAATCATATCTAAGATTG
1 ---TCATATCTAAGATTG
96604508 TATCATATCTAAGATTG
1 --TCATATCTAAGATTG
96604525 -CATATC
1 TCATATC
96604531 ATTGAAGATT
Statistics
Matches: 37, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
14 6 0.16
17 16 0.43
18 15 0.41
ACGTcount: A:0.36, C:0.16, G:0.11, T:0.38
Consensus pattern (15 bp):
TCATATCTAAGATTG
Found at i:96605138 original size:83 final size:83
Alignment explanation
Indices: 96604918--96605353 Score: 764
Period size: 83 Copynumber: 5.2 Consensus size: 83
96604908 TTCGATTTGT
* * * * * *
96604918 AAGGATGTCAAATCATCATGAGTCTGTTTGAGAACATTTGAGAATCATATCTGCTAGGTCCTCGA
1 AAGGATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGA
*
96604983 CTTGTTCCTTGTAAGCAC
66 TTTGTTCCTTGTAAGCAC
* *
96605001 AAGGATGCCTAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATGTCTGCAAGGTCCTCG
1 AAGGATGCC-AAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCG
96605066 ATTTGTTCCTTGTAAGCAC
65 ATTTGTTCCTTGTAAGCAC
*
96605085 AAGGATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTTGA
1 AAGGATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGA
96605150 TTTGTTCCTTGTAAGCAC
66 TTTGTTCCTTGTAAGCAC
96605168 AAGGATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGA
1 AAGGATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGA
96605233 TTTGTTCCTTGTAAGCAC
66 TTTGTTCCTTGTAAGCAC
96605251 AAGGATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGA
1 AAGGATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGA
*
96605316 TTTGTTCCTTGTAAGCAG
66 TTTGTTCCTTGTAAGCAC
96605334 AAGGATGCCAAACCATCTTG
1 AAGGATGCCAAACCATCTTG
96605354 GATCTGCTTC
Statistics
Matches: 340, Mismatches: 12, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
83 263 0.77
84 77 0.23
ACGTcount: A:0.27, C:0.20, G:0.21, T:0.32
Consensus pattern (83 bp):
AAGGATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGA
TTTGTTCCTTGTAAGCAC
Found at i:96605488 original size:119 final size:119
Alignment explanation
Indices: 96605277--96605875 Score: 988
Period size: 119 Copynumber: 5.0 Consensus size: 119
96605267 CTTGAGTCTG
* * * * *
96605277 TTTGAGAACATT-TGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTAAGCAGAAGGATG
1 TTTGAGAAC-TTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATG
*
96605341 CCAAACCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATA
65 CCAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATA
* *
96605396 TTTGAGAACTTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTTCTTGTAAACACAAGAATAC
1 TTTGAGAACTTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATGC
* *
96605461 CAAATCATCTTGGATCTGCTTTAGTATAAACATCTGAAGGTTAGAT-TGTTATA
66 CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATA
* * *
96605514 TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGAATAC
1 TTTGAGAACTTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATGC
*
96605579 CAAATCATCTTGGATCTGCTTCAGTGTAAACATCTGAAGGTTAGATCTGCTATA
66 CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATA
* *
96605633 TTTGAGAACGTCTGAAAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATGC
1 TTTGAGAACTTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATGC
*
96605698 CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATC
66 CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATA
96605752 TTTGAGAACGTT-TGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATG
1 TTTGAGAAC-TTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATG
* *
96605816 CCAAATCATCTTGGATCTGCTTCAGTATAAACATATGAAGGTTAGATCTGCTATC
65 CCAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATA
96605871 TTTGA
1 TTTGA
96605876 TCTGTTCCCT
Statistics
Matches: 453, Mismatches: 24, Indels: 6
0.94 0.05 0.01
Matches are distributed among these distances:
118 114 0.25
119 338 0.75
120 1 0.00
ACGTcount: A:0.29, C:0.18, G:0.18, T:0.34
Consensus pattern (119 bp):
TTTGAGAACTTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATGC
CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATA
Found at i:96605692 original size:237 final size:238
Alignment explanation
Indices: 96605277--96605875 Score: 1011
Period size: 237 Copynumber: 2.5 Consensus size: 238
96605267 CTTGAGTCTG
* * * * * *
96605277 TTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTAAGCAGAAGGATGC
1 TTTGAGAACGTTTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATGC
* *
96605342 CAAACCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATATTTGAGAACTT
66 CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATATTTGAGAACGT
* *
96605407 CTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTTCTTGTAAACACAAGAATACCAAATCATCTT
131 CTGAAAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATACCAAATCATCTT
* *
96605472 GGATCTGCTTTAGTATAAACATCTGAAGGTTAGAT-TGTTATA
196 GGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATA
* * *
96605514 TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGAATAC
1 TTTGAGAACGTTTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATGC
*
96605579 CAAATCATCTTGGATCTGCTTCAGTGTAAACATCTGAAGGTTAGATCTGCTATATTTGAGAACGT
66 CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATATTTGAGAACGT
*
96605644 CTGAAAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATGCCAAATCATCTT
131 CTGAAAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATACCAAATCATCTT
*
96605709 GGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATC
196 GGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATA
96605752 TTTGAGAACGTTTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATGC
1 TTTGAGAACGTTTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATGC
* *
96605817 CAAATCATCTTGGATCTGCTTCAGTATAAACATATGAAGGTTAGATCTGCTATCTTTGA
66 CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATATTTGA
96605876 TCTGTTCCCT
Statistics
Matches: 337, Mismatches: 24, Indels: 1
0.93 0.07 0.00
Matches are distributed among these distances:
237 214 0.64
238 123 0.36
ACGTcount: A:0.29, C:0.18, G:0.18, T:0.34
Consensus pattern (238 bp):
TTTGAGAACGTTTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATGC
CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATATTTGAGAACGT
CTGAAAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATACCAAATCATCTT
GGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATA
Found at i:96605909 original size:44 final size:44
Alignment explanation
Indices: 96605861--96605947 Score: 140
Period size: 44 Copynumber: 2.0 Consensus size: 44
96605851 TGAAGGTTAG
**
96605861 ATCTGCTATCTTTGA-TCTGTTCCCTATAAACACAGGGATGCCAA
1 ATCTGCTATCTTCAACT-TGTTCCCTATAAACACAGGGATGCCAA
96605905 ATCTGCTATCTTCAACTTGTTCCCTATAAACACAGGGATGCCA
1 ATCTGCTATCTTCAACTTGTTCCCTATAAACACAGGGATGCCA
96605948 TGCTGAAATC
Statistics
Matches: 40, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
44 39 0.98
45 1 0.03
ACGTcount: A:0.28, C:0.26, G:0.15, T:0.31
Consensus pattern (44 bp):
ATCTGCTATCTTCAACTTGTTCCCTATAAACACAGGGATGCCAA
Found at i:96608577 original size:47 final size:47
Alignment explanation
Indices: 96608508--96608628 Score: 181
Period size: 47 Copynumber: 2.6 Consensus size: 47
96608498 TTCAGAGAAA
* *
96608508 TGTGATATGTGCTTCCGTATAAGACCATATCCGGGATATGGCATCGG
1 TGTGATATGTGCTACCGTATAAGACCATATCCGGGATATGGCATCAG
* *
96608555 TGTGATATGTGCTACTGTATAAGACCATATCTGGGATATGGCATCAG
1 TGTGATATGTGCTACCGTATAAGACCATATCCGGGATATGGCATCAG
* *
96608602 TGTGATATGTGAT-CCGTGTAAGACCAT
1 TGTGATATGTGCTACCGTATAAGACCAT
96608629 GGCTGGGCTA
Statistics
Matches: 67, Mismatches: 7, Indels: 1
0.89 0.09 0.01
Matches are distributed among these distances:
46 12 0.18
47 55 0.82
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.31
Consensus pattern (47 bp):
TGTGATATGTGCTACCGTATAAGACCATATCCGGGATATGGCATCAG
Found at i:96608648 original size:93 final size:97
Alignment explanation
Indices: 96608472--96608679 Score: 219
Period size: 93 Copynumber: 2.1 Consensus size: 97
96608462 TGTGATTTCC
* * *
96608472 GTATAAGACCATAGCTGGGCTATGGCTTCAGAGAAATGTGATATGTGCTTCCGTATAAGACCATA
1 GTATAAGACCATAGCTGGGATATGGCATCA-AG--ATGTGATATGTGCATCCGTATAAGACCATA
*
96608537 TCCGGGATATGGCATCGG-TGTGATATGTGCTACT
63 GCCGGGATATGGCATCGGATGTGATATGTGCTACT
* * * *
96608571 GTATAAGACCATATCTGGGATATGGCATC-AG-TGTGATATGTG-ATCCGTGTAAGACCATGGCT
1 GTATAAGACCATAGCTGGGATATGGCATCAAGATGTGATATGTGCATCCGTATAAGACCATAGCC
* * *
96608633 GGGCTATGGCCTCGGTATGTGATATATGACTA-T
66 GGGATATGGCATCGG-ATGTGATATGTG-CTACT
**
96608666 GTGCAAGACCATAG
1 GTATAAGACCATAG
96608680 TTTTACTATG
Statistics
Matches: 92, Mismatches: 14, Indels: 10
0.79 0.12 0.09
Matches are distributed among these distances:
93 28 0.30
94 11 0.12
95 22 0.24
96 3 0.03
97 2 0.02
99 26 0.28
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.29
Consensus pattern (97 bp):
GTATAAGACCATAGCTGGGATATGGCATCAAGATGTGATATGTGCATCCGTATAAGACCATAGCC
GGGATATGGCATCGGATGTGATATGTGCTACT
Found at i:96610632 original size:22 final size:22
Alignment explanation
Indices: 96610613--96610672 Score: 95
Period size: 22 Copynumber: 2.7 Consensus size: 22
96610603 TGGCCTCTCC
96610613 ATTTTTTTCTTTTTTTCTCTTT
1 ATTTTTTTCTTTTTTTCTCTTT
*
96610635 ATTTTTTTCTCTTTTTCT-TTT
1 ATTTTTTTCTTTTTTTCTCTTT
96610656 ATTTTTTTCTCTTTTTT
1 ATTTTTTTCT-TTTTTT
96610673 TTTTTGAAAT
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
21 13 0.37
22 22 0.63
ACGTcount: A:0.05, C:0.13, G:0.00, T:0.82
Consensus pattern (22 bp):
ATTTTTTTCTTTTTTTCTCTTT
Found at i:96610655 original size:14 final size:14
Alignment explanation
Indices: 96610622--96610648 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
96610612 CATTTTTTTC
96610622 TTTTTTTCTCTTTA
1 TTTTTTTCTCTTTA
96610636 TTTTTTTCTCTTT
1 TTTTTTTCTCTTT
96610649 TTCTTTTATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.04, C:0.15, G:0.00, T:0.81
Consensus pattern (14 bp):
TTTTTTTCTCTTTA
Found at i:96613530 original size:23 final size:24
Alignment explanation
Indices: 96613499--96613543 Score: 65
Period size: 23 Copynumber: 1.9 Consensus size: 24
96613489 GATATTTAAT
96613499 AATAAATTTAAAAT-ATAATAAAA
1 AATAAATTTAAAATAATAATAAAA
* *
96613522 AATATATTTATAATAATAATAA
1 AATAAATTTAAAATAATAATAA
96613544 TTATATAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 12 0.63
24 7 0.37
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (24 bp):
AATAAATTTAAAATAATAATAAAA
Found at i:96613557 original size:15 final size:14
Alignment explanation
Indices: 96613516--96613558 Score: 50
Period size: 15 Copynumber: 2.8 Consensus size: 14
96613506 TTAAAATATA
96613516 ATAAAAAATATATTT
1 ATAAAAAATA-ATTT
96613531 ATAATAATAATAATTAT
1 ATAA-AA-AATAATT-T
96613548 ATAAAAAATAA
1 ATAAAAAATAA
96613559 AATATATTGG
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
15 9 0.36
16 7 0.28
17 9 0.36
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (14 bp):
ATAAAAAATAATTT
Found at i:96614053 original size:19 final size:19
Alignment explanation
Indices: 96614029--96614100 Score: 105
Period size: 19 Copynumber: 3.9 Consensus size: 19
96614019 AATCATATCT
96614029 TCTAAGATTGTATATCATA
1 TCTAAGATTGTATATCATA
*
96614048 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGTATATCATA
96614066 TCTAAGA-T-TATATCATA
1 TCTAAGATTGTATATCATA
*
96614083 TCTAAGATTGGATATCAT
1 TCTAAGATTGTATATCAT
96614101 TGAAGATTAT
Statistics
Matches: 47, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
16 1 0.02
17 14 0.30
18 14 0.30
19 18 0.38
ACGTcount: A:0.38, C:0.12, G:0.11, T:0.39
Consensus pattern (19 bp):
TCTAAGATTGTATATCATA
Found at i:96614082 original size:17 final size:17
Alignment explanation
Indices: 96614029--96614112 Score: 84
Period size: 17 Copynumber: 4.8 Consensus size: 17
96614019 AATCATATCT
96614029 TCTAAGATTGTATATCATA
1 TCTAAGA-T-TATATCATA
96614048 TCTAAGATTGCA-ATCATA
1 TCTAAGATT--ATATCATA
96614066 TCTAAGATTATATCATA
1 TCTAAGATTATATCATA
96614083 TCTAAGATTGGATATCAT-
1 TCTAAGATT--ATATCATA
*
96614101 T-GAAGATTATAT
1 TCTAAGATTATAT
96614113 TTCCATATGA
Statistics
Matches: 59, Mismatches: 1, Indels: 14
0.80 0.01 0.19
Matches are distributed among these distances:
15 4 0.07
16 1 0.02
17 22 0.37
18 17 0.29
19 15 0.25
ACGTcount: A:0.38, C:0.11, G:0.12, T:0.39
Consensus pattern (17 bp):
TCTAAGATTATATCATA
Found at i:96614353 original size:18 final size:18
Alignment explanation
Indices: 96614305--96614353 Score: 53
Period size: 21 Copynumber: 2.5 Consensus size: 18
96614295 ATAATATAAT
96614305 TATTTAATTAATAAATATC
1 TATTTAA-TAATAAATATC
*
96614324 TTTTATAAAATAATAAATATC
1 TATT-T--AATAATAAATATC
96614345 TATTTAATA
1 TATTTAATA
96614354 TCTAATACAT
Statistics
Matches: 25, Mismatches: 2, Indels: 7
0.74 0.06 0.21
Matches are distributed among these distances:
18 4 0.16
19 3 0.12
20 2 0.08
21 14 0.56
22 2 0.08
ACGTcount: A:0.49, C:0.04, G:0.00, T:0.47
Consensus pattern (18 bp):
TATTTAATAATAAATATC
Found at i:96629345 original size:7 final size:7
Alignment explanation
Indices: 96629317--96629368 Score: 52
Period size: 7 Copynumber: 7.6 Consensus size: 7
96629307 TCGAAACCCA
96629317 AAAACC-
1 AAAACCT
96629323 AAAACCT
1 AAAACCT
* *
96629330 AATATCT
1 AAAACCT
96629337 AAAACCT
1 AAAACCT
*
96629344 AAAACTT
1 AAAACCT
* *
96629351 GATACCT
1 AAAACCT
96629358 AAAACCT
1 AAAACCT
96629365 AAAA
1 AAAA
96629369 AAAAACAAAG
Statistics
Matches: 35, Mismatches: 10, Indels: 1
0.76 0.22 0.02
Matches are distributed among these distances:
6 6 0.17
7 29 0.83
ACGTcount: A:0.56, C:0.23, G:0.02, T:0.19
Consensus pattern (7 bp):
AAAACCT
Found at i:96629347 original size:21 final size:21
Alignment explanation
Indices: 96629317--96629368 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 21
96629307 TCGAAACCCA
*
96629317 AAAACC-AAAACCTAATATCT
1 AAAACCTAAAACCTAATACCT
* *
96629337 AAAACCTAAAACTTGATACCT
1 AAAACCTAAAACCTAATACCT
96629358 AAAACCTAAAA
1 AAAACCTAAAA
96629369 AAAAACAAAG
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
20 6 0.21
21 22 0.79
ACGTcount: A:0.56, C:0.23, G:0.02, T:0.19
Consensus pattern (21 bp):
AAAACCTAAAACCTAATACCT
Found at i:96629806 original size:5 final size:5
Alignment explanation
Indices: 96629796--96629825 Score: 51
Period size: 5 Copynumber: 5.8 Consensus size: 5
96629786 CTCTCTTGAG
96629796 AAAAT AAAAT AAAAAT AAAAT AAAAT AAAA
1 AAAAT AAAAT -AAAAT AAAAT AAAAT AAAA
96629826 AACACACAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
5 19 0.79
6 5 0.21
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (5 bp):
AAAAT
Found at i:96629817 original size:16 final size:16
Alignment explanation
Indices: 96629796--96629826 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
96629786 CTCTCTTGAG
96629796 AAAATAAAATAAAAAT
1 AAAATAAAATAAAAAT
96629812 AAAATAAAATAAAAA
1 AAAATAAAATAAAAA
96629827 ACACACAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (16 bp):
AAAATAAAATAAAAAT
Found at i:96629826 original size:11 final size:10
Alignment explanation
Indices: 96629796--96629825 Score: 51
Period size: 11 Copynumber: 2.9 Consensus size: 10
96629786 CTCTCTTGAG
96629796 AAAATAAAAT
1 AAAATAAAAT
96629806 AAAAATAAAAT
1 -AAAATAAAAT
96629817 AAAATAAAA
1 AAAATAAAA
96629826 AACACACAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 9 0.47
11 10 0.53
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (10 bp):
AAAATAAAAT
Found at i:96631117 original size:25 final size:25
Alignment explanation
Indices: 96631070--96631117 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
96631060 TTCCATGTAC
* ** *
96631070 TCATACTTATTTCATTTATCTATCT
1 TCATAATTATTTCATACAACTATCT
96631095 TCATAATTATTTCATACAACTAT
1 TCATAATTATTTCATACAACTAT
96631118 TTTGTACATA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.31, C:0.19, G:0.00, T:0.50
Consensus pattern (25 bp):
TCATAATTATTTCATACAACTATCT
Found at i:96631330 original size:46 final size:46
Alignment explanation
Indices: 96631273--96631454 Score: 303
Period size: 46 Copynumber: 4.0 Consensus size: 46
96631263 TTTGACATGA
* * * * *
96631273 TGCCATAGTATCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGT
96631319 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
96631365 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
96631411 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
96631455 AGAGCACACT
Statistics
Matches: 130, Mismatches: 5, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
45 4 0.03
46 126 0.97
ACGTcount: A:0.23, C:0.24, G:0.14, T:0.39
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
Found at i:96636112 original size:25 final size:25
Alignment explanation
Indices: 96636065--96636112 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
96636055 TTCCATGTAC
* ** *
96636065 TCATACTTATTTCATTTATCTATCT
1 TCATAATTATTTCATACAACTATCT
96636090 TCATAATTATTTCATACAACTAT
1 TCATAATTATTTCATACAACTAT
96636113 TTTGTACATA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.31, C:0.19, G:0.00, T:0.50
Consensus pattern (25 bp):
TCATAATTATTTCATACAACTATCT
Found at i:96636325 original size:46 final size:46
Alignment explanation
Indices: 96636268--96636495 Score: 350
Period size: 46 Copynumber: 5.0 Consensus size: 46
96636258 TTTGACATGA
* * * * *
96636268 TGCCATAGTATCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGT
*** *
96636314 TGCCATGGTATCTTTCAACCATGGTCTTGTTCATTTCATATCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
96636360 TGCCATGGTATCTTTCAATCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
96636406 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
96636452 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
96636496 AGAGCACACT
Statistics
Matches: 169, Mismatches: 12, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
45 4 0.02
46 165 0.98
ACGTcount: A:0.22, C:0.23, G:0.14, T:0.40
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
Found at i:96638664 original size:11 final size:11
Alignment explanation
Indices: 96638623--96638665 Score: 50
Period size: 11 Copynumber: 3.7 Consensus size: 11
96638613 TTATATACTA
* *
96638623 ATAAAATAATA
1 ATAAAATATTT
96638634 ATAAAATATCTT
1 ATAAAATAT-TT
96638646 ATTAAAATATTT
1 A-TAAAATATTT
96638658 ATAAAATA
1 ATAAAATA
96638666 ATATTTATCT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
11 15 0.54
12 5 0.18
13 8 0.29
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.37
Consensus pattern (11 bp):
ATAAAATATTT
Found at i:96638706 original size:31 final size:30
Alignment explanation
Indices: 96638628--96638706 Score: 72
Period size: 30 Copynumber: 2.6 Consensus size: 30
96638618 TACTAATAAA
* *
96638628 ATAATAAT-AAAATATCTTATTAAAATATTT
1 ATAA-AATAAAAATATCTAATTAAAATAATT
**
96638658 ATAAAATAATATTTATCTAATT-AAATAATT
1 ATAAAATAA-AAATATCTAATTAAAATAATT
96638688 ATAAAATATCAAAATATCT
1 ATAAAATA--AAAATATCT
96638707 CTAGCATCAT
Statistics
Matches: 39, Mismatches: 6, Indels: 7
0.75 0.12 0.13
Matches are distributed among these distances:
29 3 0.08
30 20 0.51
31 15 0.38
32 1 0.03
ACGTcount: A:0.54, C:0.05, G:0.00, T:0.41
Consensus pattern (30 bp):
ATAAAATAAAAATATCTAATTAAAATAATT
Found at i:96640663 original size:53 final size:53
Alignment explanation
Indices: 96640583--96640690 Score: 207
Period size: 53 Copynumber: 2.0 Consensus size: 53
96640573 GATAAGTTAG
*
96640583 TTAGCATAGTAGTTTCATCAAAAACAATATCTCCGCTAATCACATCTTTTCTA
1 TTAGCATAGTAGTTTCATCAAAAACAATATCTCCGCTAATCACAACTTTTCTA
96640636 TTAGCATAGTAGTTTCATCAAAAACAATATCTCCGCTAATCACAACTTTTCTA
1 TTAGCATAGTAGTTTCATCAAAAACAATATCTCCGCTAATCACAACTTTTCTA
96640689 TT
1 TT
96640691 TTCAGGACAC
Statistics
Matches: 54, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
53 54 1.00
ACGTcount: A:0.34, C:0.22, G:0.07, T:0.36
Consensus pattern (53 bp):
TTAGCATAGTAGTTTCATCAAAAACAATATCTCCGCTAATCACAACTTTTCTA
Found at i:96642776 original size:26 final size:26
Alignment explanation
Indices: 96642747--96642856 Score: 184
Period size: 26 Copynumber: 4.2 Consensus size: 26
96642737 TGATACAAAT
96642747 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
96642773 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
96642799 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
96642825 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
96642851 TGATAA
1 TGATAA
96642857 GAATTTCATG
Statistics
Matches: 82, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 82 1.00
ACGTcount: A:0.34, C:0.05, G:0.25, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:96656732 original size:15 final size:16
Alignment explanation
Indices: 96656700--96656732 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
96656690 TTAATCGTTG
96656700 ATTATTTTAAATTAAA
1 ATTATTTTAAATTAAA
*
96656716 ATTATTTTTAA-TAAA
1 ATTATTTTAAATTAAA
96656731 AT
1 AT
96656733 ACCTGACTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 6 0.38
16 10 0.62
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (16 bp):
ATTATTTTAAATTAAA
Found at i:96661881 original size:34 final size:34
Alignment explanation
Indices: 96661830--96661897 Score: 109
Period size: 34 Copynumber: 2.0 Consensus size: 34
96661820 ATTGTGGTCA
*
96661830 AAAGATAGAAACGGAAAGATTATAGCCATTTGAT
1 AAAGATAGAAACAGAAAGATTATAGCCATTTGAT
* *
96661864 AAAGGTAGAAACAGAAAGATTGTAGCCATTTGAT
1 AAAGATAGAAACAGAAAGATTATAGCCATTTGAT
96661898 CAAGTCACAA
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
34 31 1.00
ACGTcount: A:0.46, C:0.09, G:0.22, T:0.24
Consensus pattern (34 bp):
AAAGATAGAAACAGAAAGATTATAGCCATTTGAT
Found at i:96663652 original size:17 final size:19
Alignment explanation
Indices: 96663630--96663664 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
96663620 GATATGATAC
96663630 TAAAAT-TAT-TAAAAAAT
1 TAAAATATATATAAAAAAT
96663647 TAAAATATATATAAAAAA
1 TAAAATATATATAAAAAA
96663665 ATCAGGGAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 6 0.38
18 3 0.19
19 7 0.44
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (19 bp):
TAAAATATATATAAAAAAT
Found at i:96663961 original size:23 final size:22
Alignment explanation
Indices: 96663933--96663977 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
96663923 AAACTAAATC
96663933 TCTAAGATTACAAAATCATATCT
1 TCTAAGATTAC-AAATCATATCT
* *
96663956 TCTAAGATTGCATATCATATCT
1 TCTAAGATTACAAATCATATCT
96663978 AAGATTGCAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 10 0.50
23 10 0.50
ACGTcount: A:0.38, C:0.18, G:0.07, T:0.38
Consensus pattern (22 bp):
TCTAAGATTACAAATCATATCT
Found at i:96663980 original size:19 final size:19
Alignment explanation
Indices: 96663956--96664029 Score: 141
Period size: 19 Copynumber: 3.9 Consensus size: 19
96663946 AATCATATCT
96663956 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
96663975 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
96663993 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
96664012 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
96664030 TGAAGATTAT
Statistics
Matches: 54, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
18 18 0.33
19 36 0.67
ACGTcount: A:0.36, C:0.16, G:0.11, T:0.36
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:96664002 original size:37 final size:38
Alignment explanation
Indices: 96663949--96664029 Score: 141
Period size: 37 Copynumber: 2.2 Consensus size: 38
96663939 ATTACAAAAT
96663949 CATATC-T-TCTAAGATTGCATATCATATCTAAGATTG
1 CATATCATATCTAAGATTGCATATCATATCTAAGATTG
96663985 CA-ATCATATCTAAGATTGCATATCATATCTAAGATTG
1 CATATCATATCTAAGATTGCATATCATATCTAAGATTG
96664022 CATATCAT
1 CATATCAT
96664030 TGAAGATTAT
Statistics
Matches: 42, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
35 3 0.07
36 3 0.07
37 31 0.74
38 5 0.12
ACGTcount: A:0.36, C:0.17, G:0.10, T:0.37
Consensus pattern (38 bp):
CATATCATATCTAAGATTGCATATCATATCTAAGATTG
Found at i:96664049 original size:37 final size:37
Alignment explanation
Indices: 96663959--96664038 Score: 110
Period size: 37 Copynumber: 2.2 Consensus size: 37
96663949 CATATCTTCT
* *
96663959 AAGATTGCATATCATATCTAAGATTGCAATCATATCT
1 AAGATTACATATCATATCTAAGATTGCAATCATATCG
*
96663996 AAGATTGCATATCATATCTAAGATTGCATATCAT-T-G
1 AAGATTACATATCATATCTAAGATTGCA-ATCATATCG
96664032 AAGATTA
1 AAGATTA
96664039 TATTTCCATA
Statistics
Matches: 40, Mismatches: 2, Indels: 3
0.89 0.04 0.07
Matches are distributed among these distances:
36 6 0.15
37 29 0.73
38 5 0.12
ACGTcount: A:0.39, C:0.14, G:0.12, T:0.35
Consensus pattern (37 bp):
AAGATTACATATCATATCTAAGATTGCAATCATATCG
Found at i:96664701 original size:78 final size:78
Alignment explanation
Indices: 96664572--96664943 Score: 613
Period size: 78 Copynumber: 4.8 Consensus size: 78
96664562 GATGTAAAAC
*
96664572 ATGAAGGTTAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
96664637 TGGATCTGCTTCA
66 TGGATCTGCTTCA
* *
96664650 ATGAAGGTCCA-ATCTGTTATGTCTTTGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATC
1 ATGAAGGT-CAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATC
*
96664714 TTGGATCTACTTCA
65 TTGGATCTGCTTCA
* *
96664728 ATGAAGGTCA-ATCTGTTATGTCTTTGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
96664792 TGGATCTGCTTCA
66 TGGATCTGCTTCA
* *
96664805 ATGAAGGTCAGATCTGCTGTGTCTTCGATCAGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
96664870 TGGATCTGCTTCA
66 TGGATCTGCTTCA
* * **
96664883 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATC
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATC
96664944 TATTTCTTCG
Statistics
Matches: 277, Mismatches: 15, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
77 78 0.28
78 198 0.71
79 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.19, T:0.32
Consensus pattern (78 bp):
ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
TGGATCTGCTTCA
Found at i:96664865 original size:155 final size:156
Alignment explanation
Indices: 96664572--96664943 Score: 613
Period size: 155 Copynumber: 2.4 Consensus size: 156
96664562 GATGTAAAAC
*
96664572 ATGAAGGTTAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
* * *
96664637 TGGATCTGCTTCAATGAAGGTCCAATCTGTTATGTCTTTGATCTGCTCCCCGTCTAATACAGAGA
66 TGGATCTGCTTCAATGAAGGTCCAATCTGCTATGTCTTCGATCAGCTCCCCGTCTAATACAGAGA
96664702 TGCCAAATCATCTTGGATCTACTTCA
131 TGCCAAATCATCTTGGATCTACTTCA
* *
96664728 ATGAAGGTCA-ATCTGTTATGTCTTTGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
*
96664792 TGGATCTGCTTCAATGAAGGT-CAGATCTGCTGTGTCTTCGATCAGCTCCCCGTCTAATACAGAG
66 TGGATCTGCTTCAATGAAGGTCCA-ATCTGCTATGTCTTCGATCAGCTCCCCGTCTAATACAGAG
*
96664856 ATGCCAAATCATCTTGGATCTGCTTCA
130 ATGCCAAATCATCTTGGATCTACTTCA
* * **
96664883 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATC
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATC
96664944 TATTTCTTCG
Statistics
Matches: 200, Mismatches: 14, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
154 2 0.01
155 145 0.73
156 53 0.26
ACGTcount: A:0.25, C:0.24, G:0.19, T:0.32
Consensus pattern (156 bp):
ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
TGGATCTGCTTCAATGAAGGTCCAATCTGCTATGTCTTCGATCAGCTCCCCGTCTAATACAGAGA
TGCCAAATCATCTTGGATCTACTTCA
Found at i:96665069 original size:86 final size:87
Alignment explanation
Indices: 96664975--96665135 Score: 211
Period size: 87 Copynumber: 1.9 Consensus size: 87
96664965 GACAGTACAA
* *
96664975 GATGCCAAATCATCTTAGATCTGCTTC-AGCGT-AAACACGT-GAAAGCCAAATCTGCTATGTCT
1 GATGCCAAATCATCTTAGATCTACTTCGA-CGTGAAA-ACATCGAAAGCCAAATCTGCTATGTCT
96665037 TCGATCTGCTCTTGTCAACGCAAG
64 TCGATCTGCTCTTGTCAACGCAAG
* * * ** *
96665061 GATGCCAAATCATCTTGGATCTACTTCGATGTGAAAACATCGAAGGTTAGATCTGCTATGTCTTC
1 GATGCCAAATCATCTTAGATCTACTTCGACGTGAAAACATCGAAAGCCAAATCTGCTATGTCTTC
96665126 GATCTGCTCT
66 GATCTGCTCT
96665136 CTCGAATATG
Statistics
Matches: 64, Mismatches: 8, Indels: 5
0.83 0.10 0.06
Matches are distributed among these distances:
86 30 0.47
87 34 0.53
ACGTcount: A:0.27, C:0.24, G:0.19, T:0.30
Consensus pattern (87 bp):
GATGCCAAATCATCTTAGATCTACTTCGACGTGAAAACATCGAAAGCCAAATCTGCTATGTCTTC
GATCTGCTCTTGTCAACGCAAG
Found at i:96673107 original size:2 final size:2
Alignment explanation
Indices: 96673102--96673133 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
96673092 AAAAATTAAA
*
96673102 AT AT AT AT AA AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
96673134 CAGGGAAACA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:96673421 original size:22 final size:21
Alignment explanation
Indices: 96673386--96673461 Score: 68
Period size: 22 Copynumber: 3.7 Consensus size: 21
96673376 AAAAGGTATC
* *
96673386 TACAAATTAAATCTCTAAGAT
1 TACAAATCATATCTCTAAGAT
96673407 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATC-TCTAAGAT
* *
96673430 TGCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
*
96673449 TGC-AATCATATCT
1 TACAAATCATATCT
96673462 AAGATTGTAT
Statistics
Matches: 46, Mismatches: 5, Indels: 9
0.77 0.08 0.15
Matches are distributed among these distances:
18 6 0.13
19 11 0.24
20 1 0.02
21 3 0.07
22 15 0.33
23 10 0.22
ACGTcount: A:0.41, C:0.17, G:0.07, T:0.36
Consensus pattern (21 bp):
TACAAATCATATCTCTAAGAT
Found at i:96673478 original size:35 final size:37
Alignment explanation
Indices: 96673415--96673512 Score: 150
Period size: 35 Copynumber: 2.7 Consensus size: 37
96673405 ATTACAAAAT
96673415 CATATC-T-TCTAAGATTGCATATCATATCTAAGATTG
1 CATATCATATCTAAGATTG-ATATCATATCTAAGATTG
96673451 CA-ATCATATCTAAGATTG-TATCATATCTAAGATTG
1 CATATCATATCTAAGATTGATATCATATCTAAGATTG
96673486 CATATCATATCTAAGATTGCATATCAT
1 CATATCATATCTAAGATTG-ATATCAT
96673513 TGAAGATTAT
Statistics
Matches: 57, Mismatches: 0, Indels: 8
0.88 0.00 0.12
Matches are distributed among these distances:
35 22 0.39
36 19 0.33
37 10 0.18
38 6 0.11
ACGTcount: A:0.36, C:0.16, G:0.10, T:0.38
Consensus pattern (37 bp):
CATATCATATCTAAGATTGATATCATATCTAAGATTG
Found at i:96673520 original size:17 final size:19
Alignment explanation
Indices: 96673422--96673512 Score: 161
Period size: 19 Copynumber: 4.9 Consensus size: 19
96673412 AATCATATCT
96673422 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
96673441 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
96673459 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
96673476 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
96673495 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
96673513 TGAAGATTAT
Statistics
Matches: 69, Mismatches: 0, Indels: 6
0.92 0.00 0.08
Matches are distributed among these distances:
17 16 0.23
18 16 0.23
19 37 0.54
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.37
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:96673668 original size:21 final size:20
Alignment explanation
Indices: 96673631--96673669 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
96673621 TTGGACTTTG
**
96673631 TTTTTTTTTGGGTTTATTAT
1 TTTTTTTTTGGACTTATTAT
96673651 TTTTGTTTTTGGACTTATT
1 TTTT-TTTTTGGACTTATT
96673670 TCTGGGCCCG
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 4 0.25
21 12 0.75
ACGTcount: A:0.10, C:0.03, G:0.15, T:0.72
Consensus pattern (20 bp):
TTTTTTTTTGGACTTATTAT
Found at i:96678123 original size:21 final size:20
Alignment explanation
Indices: 96678097--96678139 Score: 52
Period size: 19 Copynumber: 2.1 Consensus size: 20
96678087 ACACCTAATG
96678097 AATCATCTTCTTTTGAAA-AAA
1 AATCAT-TT-TTTTGAAATAAA
*
96678118 AATCATTTTTTTTAAATAAA
1 AATCATTTTTTTGAAATAAA
96678138 AA
1 AA
96678140 GAAGACCGAG
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
19 7 0.35
20 7 0.35
21 6 0.30
ACGTcount: A:0.47, C:0.09, G:0.02, T:0.42
Consensus pattern (20 bp):
AATCATTTTTTTGAAATAAA
Found at i:96679104 original size:2 final size:2
Alignment explanation
Indices: 96679097--96679127 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
96679087 ACATAAAGTG
96679097 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
96679128 GCATGTTAGA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:96679209 original size:23 final size:23
Alignment explanation
Indices: 96679182--96679225 Score: 72
Period size: 23 Copynumber: 1.9 Consensus size: 23
96679172 AGTGGAAACT
96679182 AATAATA-TAATATATAATAAAGA
1 AATAATAGTAATA-ATAATAAAGA
96679205 AATAATAGTAATAATAATAAA
1 AATAATAGTAATAATAATAAA
96679226 TAAAATATTG
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
23 15 0.75
24 5 0.25
ACGTcount: A:0.66, C:0.00, G:0.05, T:0.30
Consensus pattern (23 bp):
AATAATAGTAATAATAATAAAGA
Found at i:96679619 original size:35 final size:35
Alignment explanation
Indices: 96679580--96679665 Score: 86
Period size: 35 Copynumber: 2.4 Consensus size: 35
96679570 AATAAAGATA
*
96679580 ATATAAAAATATATACA-TGAAATAGTATAAAAAAT
1 ATATAAAAATATATACATTAAAATA-TATAAAAAAT
* * * *
96679615 ATATATAACTA-ATAACATTAAAATATATACATAAT
1 ATATAAAAATATAT-ACATTAAAATATATAAAAAAT
96679650 ATATATAAAATATATA
1 ATATA-AAAATATATA
96679666 ATTGATAATA
Statistics
Matches: 40, Mismatches: 7, Indels: 7
0.74 0.13 0.13
Matches are distributed among these distances:
34 2 0.05
35 25 0.62
36 11 0.28
37 2 0.05
ACGTcount: A:0.60, C:0.05, G:0.02, T:0.33
Consensus pattern (35 bp):
ATATAAAAATATATACATTAAAATATATAAAAAAT
Found at i:96679643 original size:22 final size:22
Alignment explanation
Indices: 96679615--96679684 Score: 72
Period size: 22 Copynumber: 3.1 Consensus size: 22
96679605 TATAAAAAAT
*
96679615 ATATATAACTAATAACATTAAA
1 ATATATAACTAATAATATTAAA
96679637 ATATAT-ACATAAT-ATATATAAA
1 ATATATAAC-TAATAATAT-TAAA
* *
96679659 ATATATAATTGATAATATTAAGA
1 ATATATAACTAATAATATTAA-A
96679682 ATA
1 ATA
96679685 CATGCATAAT
Statistics
Matches: 40, Mismatches: 3, Indels: 9
0.77 0.06 0.17
Matches are distributed among these distances:
21 5 0.12
22 26 0.65
23 9 0.22
ACGTcount: A:0.57, C:0.04, G:0.03, T:0.36
Consensus pattern (22 bp):
ATATATAACTAATAATATTAAA
Found at i:96681718 original size:15 final size:15
Alignment explanation
Indices: 96681694--96681723 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
96681684 TGAGTTGACT
*
96681694 TTTGACAAACAGAAA
1 TTTGAAAAACAGAAA
96681709 TTTGAAAAACAGAAA
1 TTTGAAAAACAGAAA
96681724 ATACCTCAGC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.57, C:0.10, G:0.13, T:0.20
Consensus pattern (15 bp):
TTTGAAAAACAGAAA
Found at i:96681884 original size:88 final size:88
Alignment explanation
Indices: 96681720--96681889 Score: 218
Period size: 88 Copynumber: 1.9 Consensus size: 88
96681710 TTGAAAAACA
* * *
96681720 GAAAATACCTCAGCATGTGAGCCGAGGCCCAACTCACCTCTCGCAATATAAGTTGATTTTTTTTT
1 GAAAATACCTCAGCATGTGACCCGAGGCCCAACTCACCTCTCACAATATAAGTTGATTTTTTTTA
* * *
96681785 GAAACTTAATTTGAAAAGATTTT
66 AAAAATGAATTTGAAAAGATTTT
* * * *
96681808 GAAAATACCTC-GTCATGTGACCCGGGGCTCAACTCACTTCTCACAATATGAGTTGA-TTTTTTT
1 GAAAATACCTCAG-CATGTGACCCGAGGCCCAACTCACCTCTCACAATATAAGTTGATTTTTTTT
96681871 AAAAAATAGAATTTGAAAA
65 AAAAAAT-GAATTTGAAAA
96681890 TACCTCAGCG
Statistics
Matches: 70, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
87 12 0.17
88 58 0.83
ACGTcount: A:0.34, C:0.19, G:0.16, T:0.32
Consensus pattern (88 bp):
GAAAATACCTCAGCATGTGACCCGAGGCCCAACTCACCTCTCACAATATAAGTTGATTTTTTTTA
AAAAATGAATTTGAAAAGATTTT
Found at i:96682033 original size:256 final size:247
Alignment explanation
Indices: 96681551--96682125 Score: 619
Period size: 247 Copynumber: 2.3 Consensus size: 247
96681541 AAAAAACATT
* * *
96681551 AAAACAGAAATTGAAAATAGCTCAGCGCATGAGCCAAGGCTCAACTCACTTCTCGCAATATGAGT
1 AAAACAGAAATTGAAAATACCTCAGCG--TGACCCGAGGCTCAACTCACTTCTCGCAATATGAGT
* * * ** * *
96681616 TGA--TTCTTGACAAACAGAAACTTAAAATACCTCAGCGTGTTCTGAGGCTCAACTCACCTCTCG
64 TGATTTTTTTAAAAAACAGAAACTTAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACATCTCG
* * * * *
96681679 TAATATGAGTTGACTTTTGACAAACAGAAATTTGAAAAACAGAAAATACCTCAGCATGTGAGCCG
129 CAATATGAGTTGACTTTTGAAAAACAGAAATTTGAAAAACAGAAAATACCTCAGCACGTGAACCA
96681744 AGGCCCAACTCACCTCTCGCAATATAAGTTGATTTTTTTTTG-AAACT-TAATTTG
194 AGGCCCAACTCACCTCTCGCAATATAAGTTGA--TTTTTTTGAAAACTATAATTTG
** * *
96681798 -AAA-AGATTTTGAAAATACCTC-GTCATGTGACCCGGGGCTCAACTCACTTCTCACAATATGAG
1 AAAACAGAAATTGAAAATACCTCAG-C--GTGACCCGAGGCTCAACTCACTTCTCGCAATATGAG
* * *
96681860 TTGATTTTTTTAAAAAATAG-AATTTGAAAATACCTCAGCGTGCCCCGAGGTTCAACTCACATCT
63 TTGATTTTTTTAAAAAACAGAAACTT-AAAATACCTCAGCGTGCCCCGAGGCTCAACTCACATCT
* * *
96681924 CGCAATATGAGTTGATTTTTGAAAAATATAAA-TTGAAAAAAAAACAAAAATTGAAAATACCTCA
127 CGCAATATGAGTTGACTTTTGAAAAACAGAAATTTG----AAAAAC----A--GAAAATACCTCA
* ** * *
96681988 GTACGTGAACCAAGGTTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAGTATAATTT
182 GCACGTGAACCAAGGCCCAACTCACCTCTCGCAATATAAGTTGATTTTTTTGAAAACTATAATTT
96682053 G
247 G
* * *
96682054 AAAATCAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
1 AAAA-CAGAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACTTCTCGCAATATGAGTT
96682119 GATTTTT
65 GATTTTT
96682126 GAAAAATATA
Statistics
Matches: 269, Mismatches: 37, Indels: 34
0.79 0.11 0.10
Matches are distributed among these distances:
244 1 0.00
245 51 0.19
246 10 0.04
247 71 0.26
250 6 0.02
254 9 0.03
255 4 0.01
256 56 0.21
257 43 0.16
259 17 0.06
260 1 0.00
ACGTcount: A:0.35, C:0.20, G:0.16, T:0.29
Consensus pattern (247 bp):
AAAACAGAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACTTCTCGCAATATGAGTTG
ATTTTTTTAAAAAACAGAAACTTAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACATCTCGCA
ATATGAGTTGACTTTTGAAAAACAGAAATTTGAAAAACAGAAAATACCTCAGCACGTGAACCAAG
GCCCAACTCACCTCTCGCAATATAAGTTGATTTTTTTGAAAACTATAATTTG
Found at i:96682115 original size:89 final size:86
Alignment explanation
Indices: 96681873--96682144 Score: 348
Period size: 91 Copynumber: 3.0 Consensus size: 86
96681863 ATTTTTTTAA
* * *
96681873 AAAAT-AGAATTTGAAAATACCTCAGCGTGCCCCGAGGTTCAACTCACATCTCGCAATATGAGTT
1 AAAATCAGAAATTGAAAATACCTCAGCGTG-ACCGAGGTTCAACTCACCTCTCGCAATATGAGTT
96681937 GATTTTTGAAAAATATAAATTG
65 GATTTTTGAAAAATATAAATTG
* * *
96681959 AAAAAAAAACAAAAATTGAAAATACCTCAGTACGTGAACCAAGGTTCAACTCACCTCTCGCAATA
1 ----AAAATCAGAAATTGAAAATACCTCAG--CGTG-ACCGAGGTTCAACTCACCTCTCGCAATA
* *
96682024 TGAGTTGATTTTTTTGAAAAGTATAATTTG
59 TGAGTTGA--TTTTTGAAAAATATAAATTG
* *
96682054 AAAATCAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
1 AAAATCAGAAATTGAAAATACCTCAGCGTGACC-GAGGTTCAACTCACCTCTCGCAATATGAGTT
96682119 GATTTTTGAAAAATATAAATTG
65 GATTTTTGAAAAATATAAATTG
96682141 AAAA
1 AAAA
96682145 GAAAAAATGG
Statistics
Matches: 160, Mismatches: 16, Indels: 15
0.84 0.08 0.08
Matches are distributed among these distances:
87 22 0.14
88 2 0.01
89 35 0.22
90 4 0.03
91 42 0.26
93 37 0.23
95 18 0.11
ACGTcount: A:0.40, C:0.17, G:0.15, T:0.28
Consensus pattern (86 bp):
AAAATCAGAAATTGAAAATACCTCAGCGTGACCGAGGTTCAACTCACCTCTCGCAATATGAGTTG
ATTTTTGAAAAATATAAATTG
Found at i:96682212 original size:101 final size:98
Alignment explanation
Indices: 96682053--96682424 Score: 394
Period size: 101 Copynumber: 3.8 Consensus size: 98
96682043 AGTATAATTT
*
96682053 GAAAATCAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
1 GAAAAGCA-AAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
*
96682118 TGATTTTTGAAAAATATAAATTGAAAAGAAAAAATG
65 TGATTTTTGAAAAGTA-AAATT-AAAAGAAAAAATG
*
96682154 GAAAAGCAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
1 GAAAAGCA-AAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
* * *
96682219 TGATTTTTTTGAAAAGTAGAATT---TG-AAAAACG
65 TGA--TTTTTGAAAAGTAAAATTAAAAGAAAAAATG
*
96682251 GAAATTG-AAAA-T------ACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
1 GAAA-AGCAAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
* *
96682308 TGATTTTTGGAAAAGTAGAAATTAAAA-ACAAAATTTT
65 TGATTTTT-GAAAAGTA-AAATTAAAAGA-AAAA-ATG
* * *
96682345 GAACAA-CAAAATTTGAAAATACCTCGGTATGTGACCTGAGGCTCAACTCACCTCTCGCAATATG
1 GAA-AAGCAAAA-TTGAAAATACCTCAG--CGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
*
96682409 AGTTGATTTCTGAAAA
62 AGTTGATTTTTGAAAA
96682425 TAGAAATAAA
Statistics
Matches: 230, Mismatches: 18, Indels: 44
0.79 0.06 0.15
Matches are distributed among these distances:
87 5 0.02
88 8 0.03
89 51 0.22
93 4 0.02
94 7 0.03
95 2 0.01
96 4 0.02
97 11 0.05
98 2 0.01
101 66 0.29
102 10 0.04
103 17 0.07
104 43 0.19
ACGTcount: A:0.38, C:0.18, G:0.18, T:0.27
Consensus pattern (98 bp):
GAAAAGCAAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
GATTTTTGAAAAGTAAAATTAAAAGAAAAAATG
Found at i:96682265 original size:190 final size:187
Alignment explanation
Indices: 96681872--96682417 Score: 743
Period size: 190 Copynumber: 2.9 Consensus size: 187
96681862 GATTTTTTTA
* * * * * *
96681872 AAAAATAGAATTTGAAAATACCTCAGCGTGCCCCGAGGTTCAACTCACATCTCGCAATATGAGTT
1 AAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
96681937 GATTTTTGAAAAATATAAATT----G-AAAAA--AAAACAAAAATTGAAAATACCTCAGTACGTG
66 GATTTTTGAAAAATATAAATTAAAAGAAAAAATGAAAAC-AAAATTGAAAATACCTCAG-ACGTG
* * *
96681995 AACC-AAGGTTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAGTATAATTTG
129 -ACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAGTAGAATTTG
*
96682054 AAAATCAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
1 AAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
96682119 GATTTTTGAAAAATATAAATTGAAAAGAAAAAATGGAAAAGCAGAAATTGAAAATACCTCAG-CG
66 GATTTTTGAAAAATATAAATT-AAAAGAAAAAAT-GAAAA-CA-AAATTGAAAATACCTCAGACG
*
96682183 TGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAGTAGAATTTG
127 TGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAGTAGAATTTG
*
96682244 AAAAACGGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
1 AAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
* * * *
96682309 GATTTTTGGAAAAGTAGAAATTAAAA-ACAAAATTTTGAACAACAAAATTTGAAAATACCTCGGT
66 GATTTTT-GAAAAATATAAATTAAAAGA-AAAA--ATGAA-AACAAAA-TTGAAAATACCTCAG-
*
96682373 ATGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
124 ACGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
96682418 CTGAAAATAG
Statistics
Matches: 325, Mismatches: 19, Indels: 29
0.87 0.05 0.08
Matches are distributed among these distances:
182 79 0.24
187 1 0.00
188 5 0.02
189 3 0.01
190 137 0.42
191 36 0.11
192 22 0.07
193 42 0.13
ACGTcount: A:0.38, C:0.18, G:0.17, T:0.27
Consensus pattern (187 bp):
AAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
GATTTTTGAAAAATATAAATTAAAAGAAAAAATGAAAACAAAATTGAAAATACCTCAGACGTGAC
CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAGTAGAATTTG
Found at i:96682289 original size:89 final size:87
Alignment explanation
Indices: 96682162--96682336 Score: 305
Period size: 89 Copynumber: 2.0 Consensus size: 87
96682152 TGGAAAAGCA
96682162 GAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
1 GAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTT
* *
96682227 TTGAAAAGTAGAATTTGAAAAACG
65 TGGAAAAGTAGAAATT-AAAAACG
*
96682251 GAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
1 GAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
96682316 GGAAAAGTAGAAATTAAAAAC
66 GGAAAAGTAGAAATTAAAAAC
96682337 AAAATTTTGA
Statistics
Matches: 83, Mismatches: 3, Indels: 2
0.94 0.03 0.02
Matches are distributed among these distances:
87 6 0.07
88 18 0.22
89 59 0.71
ACGTcount: A:0.35, C:0.19, G:0.19, T:0.27
Consensus pattern (87 bp):
GAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
GGAAAAGTAGAAATTAAAAACG
Found at i:96690687 original size:21 final size:21
Alignment explanation
Indices: 96690663--96690704 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
96690653 GATTTGAAGT
96690663 GTTGTGACTGAGAATTATATA
1 GTTGTGACTGAGAATTATATA
*
96690684 GTTGTGACTGCGAATTATATA
1 GTTGTGACTGAGAATTATATA
96690705 ATTCTAACCT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.31, C:0.07, G:0.24, T:0.38
Consensus pattern (21 bp):
GTTGTGACTGAGAATTATATA
Found at i:96692275 original size:21 final size:21
Alignment explanation
Indices: 96692249--96692291 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
96692239 GACAGGGTTA
96692249 ATTCCCTGTTTTAATCTTTCG
1 ATTCCCTGTTTTAATCTTTCG
96692270 ATTCCCTGTTTTAATCTTTCG
1 ATTCCCTGTTTTAATCTTTCG
96692291 A
1 A
96692292 AGAAATCCAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.16, C:0.23, G:0.09, T:0.51
Consensus pattern (21 bp):
ATTCCCTGTTTTAATCTTTCG
Found at i:96694990 original size:23 final size:23
Alignment explanation
Indices: 96694963--96695006 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
96694953 AGTGGAAACT
96694963 AATAATA-TAATATAAAATAAAGA
1 AATAATAGTAATA-AAAATAAAGA
*
96694986 AATAATAGTAATAATAATAAA
1 AATAATAGTAATAAAAATAAA
96695007 TAAAATATTG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
23 14 0.74
24 5 0.26
ACGTcount: A:0.68, C:0.00, G:0.05, T:0.27
Consensus pattern (23 bp):
AATAATAGTAATAAAAATAAAGA
Found at i:96695440 original size:22 final size:22
Alignment explanation
Indices: 96695361--96695447 Score: 68
Period size: 22 Copynumber: 3.7 Consensus size: 22
96695351 AATAAAGATA
* *
96695361 ATATAAAAAATACATACATGAA-
1 ATATATAAAATATATACAT-AAC
* *
96695383 ATAGTATAAAAAATATATATAAC
1 ATA-TATAAAATATATACATAAC
*
96695406 TAATAACATTAAAATATATACATAAC
1 --AT-ATA-TAAAATATATACATAAC
96695432 ATATATAAAATATATA
1 ATATATAAAATATATA
96695448 ATTGATAATA
Statistics
Matches: 51, Mismatches: 8, Indels: 12
0.72 0.11 0.17
Matches are distributed among these distances:
22 16 0.31
23 14 0.27
24 2 0.04
25 3 0.06
26 16 0.31
ACGTcount: A:0.61, C:0.07, G:0.02, T:0.30
Consensus pattern (22 bp):
ATATATAAAATATATACATAAC
Found at i:96697167 original size:21 final size:22
Alignment explanation
Indices: 96697138--96697178 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
96697128 TCAACCCTTT
*
96697138 GATTTAAAATC-CACATGACTG
1 GATTAAAAATCACACATGACTG
96697159 GATTAAAAATCACACATGAC
1 GATTAAAAATCACACATGAC
96697179 AACTACATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 10 0.56
22 8 0.44
ACGTcount: A:0.44, C:0.20, G:0.12, T:0.24
Consensus pattern (22 bp):
GATTAAAAATCACACATGACTG
Found at i:96698209 original size:30 final size:30
Alignment explanation
Indices: 96698173--96698230 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
96698163 TAGGCACTTC
* * *
96698173 CACACGGGTAATCCACATGCCCGTGTGTGG
1 CACACGGGCAAGCCACACGCCCGTGTGTGG
*
96698203 CACACGGGCAGGCCACACGCCCGTGTGT
1 CACACGGGCAAGCCACACGCCCGTGTGT
96698231 CATGGCCGTG
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.19, C:0.34, G:0.31, T:0.16
Consensus pattern (30 bp):
CACACGGGCAAGCCACACGCCCGTGTGTGG
Found at i:96702035 original size:27 final size:27
Alignment explanation
Indices: 96702004--96702057 Score: 99
Period size: 27 Copynumber: 2.0 Consensus size: 27
96701994 TGGAAAAAAC
96702004 CACAGGCAAAGGAGAAGAAAATTCACT
1 CACAGGCAAAGGAGAAGAAAATTCACT
*
96702031 CACAGGCAGAGGAGAAGAAAATTCACT
1 CACAGGCAAAGGAGAAGAAAATTCACT
96702058 ATGTCGAATT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.46, C:0.19, G:0.24, T:0.11
Consensus pattern (27 bp):
CACAGGCAAAGGAGAAGAAAATTCACT
Found at i:96703071 original size:26 final size:26
Alignment explanation
Indices: 96703034--96703115 Score: 137
Period size: 26 Copynumber: 3.2 Consensus size: 26
96703024 TGATACAAAT
*
96703034 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
96703060 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
96703086 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
96703112 TGAT
1 TGAT
96703116 GGGCATTTCA
Statistics
Matches: 52, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 52 1.00
ACGTcount: A:0.32, C:0.06, G:0.24, T:0.38
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:96704623 original size:26 final size:26
Alignment explanation
Indices: 96704594--96704646 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
96704584 TTTACAGTTT
96704594 TACCCCTAGGAGATAAATT-ACCGAAA
1 TACCCCTAGG-GATAAATTGACCGAAA
* *
96704620 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGGGATAAATTGACCGAAA
96704646 T
1 T
96704647 GCATGTTTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.38, C:0.23, G:0.15, T:0.25
Consensus pattern (26 bp):
TACCCCTAGGGATAAATTGACCGAAA
Found at i:96713637 original size:3 final size:3
Alignment explanation
Indices: 96713629--96713926 Score: 98
Period size: 3 Copynumber: 99.7 Consensus size: 3
96713619 TATTTTGCTA
* * * *
96713629 TAT TAT TAT TAA AAT TGATT TAT T-T TAT T-T TAT TGT TAAT TCT -AT
1 TAT TAT TAT TAT TAT T-A-T TAT TAT TAT TAT TAT TAT T-AT TAT TAT
** * * *
96713674 TAT TAT TGC TAT TAT TAT TGT TAT TACT T-T TAT TCT T-T TAT TAC
1 TAT TAT TAT TAT TAT TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT
* * * * * * *
96713718 TAT TGT TGT TGT TAT T-T CTCT TGT TGT TTT TAT TAT TAT T-T ATAT
1 TAT TAT TAT TAT TAT TAT -TAT TAT TAT TAT TAT TAT TAT TAT -TAT
** * * *
96713763 TAT CGT TAT TAT TAT TAT TCCT TAG T-T TAT TAT TAT TAC T-T TAT
1 TAT TAT TAT TAT TAT TAT T-AT TAT TAT TAT TAT TAT TAT TAT TAT
** * * * * * *
96713807 CGT TAT TTT CTAT CAT TGT TAT TAT TAA TA- TAC TAT TAT TAT TTT
1 TAT TAT TAT -TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* *
96713852 TAT TAAT GTAT TAT TAT TAT TAT TAT TTT CTAC T-T TAT TAT TAT TAT
1 TAT T-AT -TAT TAT TAT TAT TAT TAT TAT -TAT TAT TAT TAT TAT TAT
* ** *
96713899 TAT TAC TAT TGC TAT TAT CA- TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
96713927 AACTAATTAA
Statistics
Matches: 214, Mismatches: 58, Indels: 46
0.67 0.18 0.14
Matches are distributed among these distances:
2 17 0.08
3 177 0.83
4 17 0.08
5 3 0.01
ACGTcount: A:0.26, C:0.07, G:0.05, T:0.62
Consensus pattern (3 bp):
TAT
Found at i:96713842 original size:23 final size:23
Alignment explanation
Indices: 96713816--96713908 Score: 95
Period size: 23 Copynumber: 4.2 Consensus size: 23
96713806 TCGTTATTTT
* *
96713816 CTATCATTGTTATTATTAATATA
1 CTATTATTATTATTATTAATATA
* *
96713839 CTATTATTATTTTTATTAATGTA
1 CTATTATTATTATTATTAATATA
* * *
96713862 TTATTATTATTATTATT-TTCTA
1 CTATTATTATTATTATTAATATA
96713884 CT-TTATTATTATTATT-AT-TA
1 CTATTATTATTATTATTAATATA
96713904 CTATT
1 CTATT
96713909 GCTATTATCA
Statistics
Matches: 59, Mismatches: 10, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
20 4 0.07
21 17 0.29
22 4 0.07
23 34 0.58
ACGTcount: A:0.30, C:0.06, G:0.02, T:0.61
Consensus pattern (23 bp):
CTATTATTATTATTATTAATATA
Found at i:96714147 original size:2 final size:2
Alignment explanation
Indices: 96714140--96714170 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
96714130 AATTATTATG
*
96714140 TA TA TA TA CA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
96714171 TTAAAAATTT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.48
Consensus pattern (2 bp):
TA
Found at i:96720129 original size:44 final size:45
Alignment explanation
Indices: 96720080--96720206 Score: 150
Period size: 44 Copynumber: 2.8 Consensus size: 45
96720070 TTCACTCAGC
* *
96720080 CTTATCTCCCTGAAGTAGCAAGGGAGCAGACCGAAGATTGTA-AT
1 CTTATCTCCCTGAAGTAGCAAGGAAGCAGACCGAAGATTGAAGAT
* * * *
96720124 CTTATCTTCTTGAGGTAGCAAGGAAGCAGACTGAAGATTGAAGAT
1 CTTATCTCCCTGAAGTAGCAAGGAAGCAGACCGAAGATTGAAGAT
* * *
96720169 CTTATCTCCCTG-AGATAGCAATGAAGTAGATCGAAGAT
1 CTTATCTCCCTGAAG-TAGCAAGGAAGCAGACCGAAGAT
96720207 GGCGAATCTT
Statistics
Matches: 68, Mismatches: 13, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
44 37 0.54
45 31 0.46
ACGTcount: A:0.33, C:0.17, G:0.24, T:0.25
Consensus pattern (45 bp):
CTTATCTCCCTGAAGTAGCAAGGAAGCAGACCGAAGATTGAAGAT
Done.