Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr02 99090824
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 99090824
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 317 characters in sequence are not A, C, G, or T
File 311 of 318
Found at i:96720188 original size:45 final size:44
Alignment explanation
Indices: 96720080--96720220 Score: 149
Period size: 45 Copynumber: 3.2 Consensus size: 44
96720070 TTCACTCAGC
* *
96720080 CTTATCTCCCTGA-AGTAGCAAGGGAGCAGACCGAAGATTGTAAT
1 CTTATCTCCCTGAGA-TAGCAAGGAAGCAGACCGAAGATTGAAAT
* * * *
96720124 CTTATCTTCTTGAGGTAGCAAGGAAGCAGACTGAAGATTGAAGAT
1 CTTATCTCCCTGAGATAGCAAGGAAGCAGACCGAAGATTGAA-AT
* * * * *
96720169 CTTATCTCCCTGAGATAGCAATGAAGTAGATCGAAGATGGCGAAT
1 CTTATCTCCCTGAGATAGCAAGGAAGCAGACCGAAGATTG-AAAT
96720214 CTTATCT
1 CTTATCT
96720221 TCTCAAGGTA
Statistics
Matches: 79, Mismatches: 15, Indels: 5
0.80 0.15 0.05
Matches are distributed among these distances:
44 35 0.44
45 43 0.54
46 1 0.01
ACGTcount: A:0.32, C:0.18, G:0.24, T:0.26
Consensus pattern (44 bp):
CTTATCTCCCTGAGATAGCAAGGAAGCAGACCGAAGATTGAAAT
Found at i:96720395 original size:187 final size:188
Alignment explanation
Indices: 96720112--96720485 Score: 552
Period size: 187 Copynumber: 2.0 Consensus size: 188
96720102 GGAGCAGACC
* * *
96720112 GAAGATTGTAATCTTATCTTCTTGAGGTAGCAAGGAAGCAGACTGAAGATTGAAGATCTTATCTC
1 GAAGATTGTAATCTTATCTTCTTGAGGTAGCAAGGAAGCAAACTAAAGATTAAAGATCTTATCTC
* * * * *
96720177 CCTGAGATAGCAATGAAGTAGATCGAAGATGGCGAATCTTATCTTCTCAAGGTAGCAGGGAAACT
66 CCTGAGATAACAATGAAGCAGATCAAAGATGGCGAATCTTATCTTCTCAAGGTAACAGGGAAACA
96720242 GATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGCTGAAGATTGTT
131 GATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGCTGAAGATTGTT
** *
96720300 GAAGATTGTTGTCTTATCTTCTTGAGGTAG-TAGGAAGCAAACTAAAGATTAAAGATCTTATCTC
1 GAAGATTGTAATCTTATCTTCTTGAGGTAGCAAGGAAGCAAACTAAAGATTAAAGATCTTATCTC
* * * * * * *
96720364 CTTGAGATAATAGTGGAGCAGATCAAAGATGGTGAATCTTATCTTCTCGAGGTAACAGGGAAGCA
66 CCTGAGATAACAATGAAGCAGATCAAAGATGGCGAATCTTATCTTCTCAAGGTAACAGGGAAACA
* * *
96720429 GATTTTAGCCACCAGCCTTATCTTTCTGAGGTAGCAAGAGAGTAGGTTGAAGATTGT
131 GATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGCTGAAGATTGT
96720486 AGTCTTATCT
Statistics
Matches: 165, Mismatches: 21, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
187 137 0.83
188 28 0.17
ACGTcount: A:0.31, C:0.16, G:0.25, T:0.29
Consensus pattern (188 bp):
GAAGATTGTAATCTTATCTTCTTGAGGTAGCAAGGAAGCAAACTAAAGATTAAAGATCTTATCTC
CCTGAGATAACAATGAAGCAGATCAAAGATGGCGAATCTTATCTTCTCAAGGTAACAGGGAAACA
GATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGCTGAAGATTGTT
Found at i:96720685 original size:44 final size:43
Alignment explanation
Indices: 96720622--96720775 Score: 193
Period size: 44 Copynumber: 3.5 Consensus size: 43
96720612 GCCACTATCC
96720622 TATCTCCCTAAGCAGTAGTGGAGTAGGCTGAAGATTACAGATCT
1 TATCTCCCTAAGCAGTAGTGGAGTA-GCTGAAGATTACAGATCT
* * * *
96720666 TATCTCCTTAAACAATAGTGGAGTAGCTGAAGATTACAGATTT
1 TATCTCCCTAAGCAGTAGTGGAGTAGCTGAAGATTACAGATCT
* * * **
96720709 TATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGA-CAGTGAATCT
1 TATCTCCCTAAGCAGTAGTGGAGTAGCT-GAAGATTACAG-ATCT
96720753 TATCTCCCTAAGCAGTAGTGGAG
1 TATCTCCCTAAGCAGTAGTGGAG
96720776 CAGGTTGAAA
Statistics
Matches: 95, Mismatches: 13, Indels: 4
0.85 0.12 0.04
Matches are distributed among these distances:
43 42 0.44
44 53 0.56
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.27
Consensus pattern (43 bp):
TATCTCCCTAAGCAGTAGTGGAGTAGCTGAAGATTACAGATCT
Found at i:96720776 original size:44 final size:44
Alignment explanation
Indices: 96720576--96720778 Score: 191
Period size: 44 Copynumber: 4.7 Consensus size: 44
96720566 AATACGGCAA
* ** * *
96720576 ATCTTATCTCCTTAAGCAGTAGTGGAGCAGATTTAAG-CCAC-T
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATCACAG
* * * *
96720618 ATCCTATCTCCCTAAGCAGTAGTGGAGTAG-GCTGAAGATTACAG
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATC-GAAGATCACAG
* * * * * *
96720662 ATCTTATCTCCTTAAACAATAGTGGAGTAGCT-GAAGATTACAG
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATCACAG
* **
96720705 ATTTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGA-CAGTG
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATCACAG
96720748 AATCTTATCTCCCTAAGCAGTAGTGGAGCAG
1 -ATCTTATCTCCCTAAGCAGTAGTGGAGCAG
96720779 GTTGAAATCA
Statistics
Matches: 131, Mismatches: 24, Indels: 10
0.79 0.15 0.06
Matches are distributed among these distances:
42 30 0.23
43 41 0.31
44 60 0.46
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.28
Consensus pattern (44 bp):
ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATCACAG
Found at i:96720798 original size:44 final size:44
Alignment explanation
Indices: 96720575--96720803 Score: 184
Period size: 44 Copynumber: 5.3 Consensus size: 44
96720565 AAATACGGCA
* * * * *
96720575 AATCTTATCTCCTTAAGCAGTAGTGGAGCAGATTTAAG-CCACT
1 AATCTTATCTCCCTAAGCAGTAGTGGAGCAGGTTGAAGATCAAT
* * * *
96720618 -ATCCTATCTCCCTAAGCAGTAGTGGAGTAGGCTGAAGATTACA-
1 AATCTTATCTCCCTAAGCAGTAGTGGAGCAGGTTGAAGATCA-AT
* * * * * * *
96720661 GATCTTATCTCCTTAAACAATAGTGGAGTA-GCTGAAGATTACA-
1 AATCTTATCTCCCTAAGCAGTAGTGGAGCAGGTTGAAGATCA-AT
* * * * *
96720704 GATTTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGA-CAGT
1 AATCTTATCTCCCTAAGCAGTAGTGGAGCAGGTTGAAGATCAAT
96720747 GAATCTTATCTCCCTAAGCAGTAGTGGAGCAGGTTGAA-ATCAAT
1 -AATCTTATCTCCCTAAGCAGTAGTGGAGCAGGTTGAAGATCAAT
96720791 AATTCTTATCTCC
1 AA-TCTTATCTCC
96720804 TTGAAGTTCC
Statistics
Matches: 150, Mismatches: 28, Indels: 15
0.78 0.15 0.08
Matches are distributed among these distances:
42 31 0.21
43 43 0.29
44 76 0.51
ACGTcount: A:0.31, C:0.20, G:0.21, T:0.29
Consensus pattern (44 bp):
AATCTTATCTCCCTAAGCAGTAGTGGAGCAGGTTGAAGATCAAT
Found at i:96721821 original size:88 final size:88
Alignment explanation
Indices: 96720791--96721834 Score: 1399
Period size: 88 Copynumber: 11.9 Consensus size: 88
96720781 TGAAATCAAT
* * *
96720791 AATTCTTATCTCCTTGAAGTTCCAGCGGAGTAGATCGAAGCTACAAATCTCTTCTCCTTGAAATG
1 AATTCGTATCTCCTTGAAGTTTCAGCGGAGTAGATCGAAGCTACAAATCTCTTCTCCCTGAAATG
* *
96720856 GCATTGGAGCGGTTCGAAGCCAC
66 ACATTGGAGCGGCTCGAAGCCAC
* * * * *
96720879 AATTCTTATCTCCTTGAAGTTTCAGCGGAATAGATAGAAACTACAAATCTCTTCTCCCTGAATTG
1 AATTCGTATCTCCTTGAAGTTTCAGCGGAGTAGATCGAAGCTACAAATCTCTTCTCCCTGAAATG
**
96720944 GTATTGGAGCGGCTCGAAGCCAC
66 ACATTGGAGCGGCTCGAAGCCAC
* * * * *
96720967 AATTCTTATCTCCTTGAAGTTTCAGCGGAATAGATCGAAACTACAAATCTCTCCT-CCTTAAATT
1 AATTCGTATCTCCTTGAAGTTTCAGCGGAGTAGATCGAAGCTACAAATCTCTTCTCCCTGAAA-T
*
96721031 GGCATTGGAGCGGCTCGAAGCCAC
65 GACATTGGAGCGGCTCGAAGCCAC
* *
96721055 AATTCGTATCTCCTTGAAGTTCCAGCGGAGTAGATAGAAGCTACAAATCTCTTCTCCCTGAAATG
1 AATTCGTATCTCCTTGAAGTTTCAGCGGAGTAGATCGAAGCTACAAATCTCTTCTCCCTGAAATG
* *
96721120 ACACTGGAGCAGCTCGAAGCCAC
66 ACATTGGAGCGGCTCGAAGCCAC
* * * * * *
96721143 AATCCGTATCTCCTTAAAGTTTTAGCGGAGTAGATTGAAGCTACAAATCTCTTTTCCCTAAAATG
1 AATTCGTATCTCCTTGAAGTTTCAGCGGAGTAGATCGAAGCTACAAATCTCTTCTCCCTGAAATG
*
96721208 ACACT-GACGCGGCTCGAAGCCAC
66 ACATTGGA-GCGGCTCGAAGCCAC
* * * * * *
96721231 AATTCGTATCTTCTTAAAGTTTCAGTGGAGTAGATCGAAGCTATAAATCTATTTTCCCTGAAATG
1 AATTCGTATCTCCTTGAAGTTTCAGCGGAGTAGATCGAAGCTACAAATCTCTTCTCCCTGAAATG
*
96721296 ACACTGGAGCGGCTCGAAGCCAC
66 ACATTGGAGCGGCTCGAAGCCAC
* * * * *
96721319 AATCCGTATCTCCTTGAAGTTTCAACAGAGTAGATCGAAGCTACATATCTTTTCTCCCTGAAATG
1 AATTCGTATCTCCTTGAAGTTTCAGCGGAGTAGATCGAAGCTACAAATCTCTTCTCCCTGAAATG
*
96721384 ACACTGGAGCGGCTCGAAGCCAC
66 ACATTGGAGCGGCTCGAAGCCAC
* * * * * *
96721407 AATCCATATCTCCTTGAAGTTTCAACAGAGTAGATCGAAGCTACAAATATCTTCTCCCTAAAATG
1 AATTCGTATCTCCTTGAAGTTTCAGCGGAGTAGATCGAAGCTACAAATCTCTTCTCCCTGAAATG
* * **
96721472 ACATTGAAGTGGCTCGAATTCAC
66 ACATTGGAGCGGCTCGAAGCCAC
* * * *
96721495 AATTCGTATCTCCTTGAAGTTTCAGCGGAATAGATCGAAACTACAAATCTTTTCTCCCTGAATTG
1 AATTCGTATCTCCTTGAAGTTTCAGCGGAGTAGATCGAAGCTACAAATCTCTTCTCCCTGAAATG
* *
96721560 TCATTGGAGCGGTTCGAAGCCAC
66 ACATTGGAGCGGCTCGAAGCCAC
* * * *
96721583 AATTCTTATCTCCTTGAAGTTTCAACGGAATAGATCGAAACTACAAATCTCTTCTCCCTGAAATG
1 AATTCGTATCTCCTTGAAGTTTCAGCGGAGTAGATCGAAGCTACAAATCTCTTCTCCCTGAAATG
* * *
96721648 GCGTTGGAGCGGCTCAAAGCCAC
66 ACATTGGAGCGGCTCGAAGCCAC
* *
96721671 AATTCGTATCTCCTTGAAGTTCCAGCGGAGTAGATCGAAGCTACAAATCTCTTCTTCCTGAAATG
1 AATTCGTATCTCCTTGAAGTTTCAGCGGAGTAGATCGAAGCTACAAATCTCTTCTCCCTGAAATG
* * * * * *
96721736 GCACTGGCGTGGCTCGAAGCTAT
66 ACATTGGAGCGGCTCGAAGCCAC
96721759 AATTCGTATCTCCTTGAAGTTTCAGCGGAGTAGATCGAAGCTACAAATCTCTTCTCCCTGAAATG
1 AATTCGTATCTCCTTGAAGTTTCAGCGGAGTAGATCGAAGCTACAAATCTCTTCTCCCTGAAATG
96721824 ACATTGGAGCG
66 ACATTGGAGCG
96721835 ATTGAAACCA
Statistics
Matches: 850, Mismatches: 102, Indels: 8
0.89 0.11 0.01
Matches are distributed among these distances:
87 7 0.01
88 835 0.98
89 8 0.01
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.28
Consensus pattern (88 bp):
AATTCGTATCTCCTTGAAGTTTCAGCGGAGTAGATCGAAGCTACAAATCTCTTCTCCCTGAAATG
ACATTGGAGCGGCTCGAAGCCAC
Found at i:96721898 original size:36 final size:37
Alignment explanation
Indices: 96721850--96721964 Score: 133
Period size: 36 Copynumber: 2.9 Consensus size: 37
96721840 AACCACAAAC
96721850 CTTATCTCCCTGAAGTTGCAGTGGAGCAGGCTGAAGT
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGGCTGAAGT
* *
96721887 -TTATCTCCCTGAAATTGCAGTGGAGCAGGTTGAAGTTACAAGT
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGGCT---G----AAGT
*
96721930 CTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAA
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGGCTGAA
96721965 TAGCAAATCT
Statistics
Matches: 65, Mismatches: 5, Indels: 16
0.76 0.06 0.19
Matches are distributed among these distances:
36 29 0.45
37 2 0.03
39 1 0.02
41 1 0.02
43 4 0.06
44 28 0.43
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.28
Consensus pattern (37 bp):
CTTATCTCCCTGAAGTTGCAGTGGAGCAGGCTGAAGT
Found at i:96721950 original size:44 final size:44
Alignment explanation
Indices: 96721887--96722365 Score: 258
Period size: 44 Copynumber: 10.8 Consensus size: 44
96721877 AGGCTGAAGT
* * * *
96721887 TTATCTCCCTGAAATTGCAGTGGAGCAGGTTGAAGTTACAAGTC
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTACAAATC
*
96721931 TTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAA--TAGCAAATC
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTA-CAAATC
* * * * * *
96721974 TTATCTCTCTGAAGTTGTAGTAGAGTAGATTAAAGCTATAAATC
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTACAAATC
* * * * ** *
96722018 CTATAC-CTCTGAAGTTGCAGTAGG-TCGGATCAAACCTACCATGGTGAATC
1 TTAT-CTCCCTGAAGTTGCAGT-GGAGCAGATTGAAGCTA-CA-----AATC
* * * * *
96722068 TTATCTCCCTGAAGTTGTAGTGGAGTAGATTGAAGCCATAAACC
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTACAAATC
* * * * * * *
96722112 TTTTCCCCCTGAAGTTGTAGTGGGGCA-AGTTGAAATCAACAATTC
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGA-TTG-AAGCTACAAATC
* * * *
96722157 TTATCTCCATGAAGTTGCAGTGGAGCAGACTGAAGATAGCAAACC
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTA-CAAATC
* * * ** *
96722202 TTATCTTCCTGAAGTTGCAGTGGAGTAGGTTGAAATTACAGATC
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTACAAATC
* * * * *
96722246 TTATCTCTCTGAAGTTGTAGTAGAGCAGA-T-CA--TAGCAAACC
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTA-CAAATC
* * * ** * *
96722287 TTATCTTCCTGAAGTAGCAGTAGAATAGGTTGAAG-TTCAAATC
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTACAAATC
* * * * *
96722330 TTATTTCCCTTAAGTTGAAATGGAACAGATTGAAGC
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGC
96722366 AATAAATTAC
Statistics
Matches: 324, Mismatches: 89, Indels: 44
0.71 0.19 0.10
Matches are distributed among these distances:
40 2 0.01
41 26 0.08
42 4 0.01
43 67 0.21
44 122 0.38
45 71 0.22
46 1 0.00
49 4 0.01
50 27 0.08
ACGTcount: A:0.30, C:0.18, G:0.22, T:0.30
Consensus pattern (44 bp):
TTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTACAAATC
Found at i:96722191 original size:89 final size:88
Alignment explanation
Indices: 96722065--96722274 Score: 226
Period size: 89 Copynumber: 2.4 Consensus size: 88
96722055 ACCATGGTGA
* * * * *
96722065 ATCTTATCTCCCTGAAGTTGTAGTGGAGTAGATTGAAGCCA-TAAACCTTTTCCCCCTGAAGTTG
1 ATCTTATCT-CCTGAAGTTGTAGTGGAGCAGACTGAAGACAGCAAACCTTATCCCCCTGAAGTTG
* *
96722129 TAGTGGGGCAAGTTGAAATCAACA-
65 CAGTGGAGCAAGTTGAAAT-AACAG
* * **
96722153 ATTCTTATCTCCATGAAGTTGCAGTGGAGCAGACTGAAGATAGCAAACCTTATCTTCCTGAAGTT
1 A-TCTTATCTCC-TGAAGTTGTAGTGGAGCAGACTGAAGACAGCAAACCTTATCCCCCTGAAGTT
* * *
96722218 GCAGTGGAGTAGGTTGAAATTACAG
64 GCAGTGGAGCAAGTTGAAATAACAG
*
96722243 ATCTTATCTCTCTGAAGTTGTAGTAGAGCAGA
1 ATCTTATCTC-CTGAAGTTGTAGTGGAGCAGA
96722275 TCATAGCAAA
Statistics
Matches: 101, Mismatches: 16, Indels: 9
0.80 0.13 0.07
Matches are distributed among these distances:
88 3 0.03
89 62 0.61
90 36 0.36
ACGTcount: A:0.29, C:0.18, G:0.23, T:0.30
Consensus pattern (88 bp):
ATCTTATCTCCTGAAGTTGTAGTGGAGCAGACTGAAGACAGCAAACCTTATCCCCCTGAAGTTGC
AGTGGAGCAAGTTGAAATAACAG
Found at i:96722299 original size:41 final size:43
Alignment explanation
Indices: 96722156--96722310 Score: 124
Period size: 45 Copynumber: 3.6 Consensus size: 43
96722146 ATCAACAATT
*
96722156 CTTATC-TCCATGAAGTTGCAGTGGAGCA-GACTGAAGATAGCAAAC
1 CTTATCTTCC-TGAAGTTGCAGTAGAGCAGGA-T-AA-ATAGCAAAC
* * * * *
96722201 CTTATCTTCCTGAAGTTGCAGTGGAGTAGGTTGAAATTA-CAGAT
1 CTTATCTTCCTGAAGTTGCAGTAGAGCAGGAT-AAA-TAGCAAAC
* *
96722245 CTTATC-TCTCTGAAGTTGTAGTAGAGCA-GAT-CATAGCAAAC
1 CTTATCTTC-CTGAAGTTGCAGTAGAGCAGGATAAATAGCAAAC
*
96722286 CTTATCTTCCTGAAGTAGCAGTAGA
1 CTTATCTTCCTGAAGTTGCAGTAGA
96722311 ATAGGTTGAA
Statistics
Matches: 91, Mismatches: 13, Indels: 16
0.76 0.11 0.13
Matches are distributed among these distances:
40 2 0.02
41 24 0.26
42 2 0.02
43 4 0.04
44 26 0.29
45 29 0.32
46 4 0.04
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.29
Consensus pattern (43 bp):
CTTATCTTCCTGAAGTTGCAGTAGAGCAGGATAAATAGCAAAC
Found at i:96723897 original size:12 final size:12
Alignment explanation
Indices: 96723882--96723911 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
96723872 ATTGTTAATT
96723882 CTATTATTATTG
1 CTATTATTATTG
96723894 CTATTATTATTG
1 CTATTATTATTG
*
96723906 TTATTA
1 CTATTA
96723912 CTTTTATTCT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.27, C:0.07, G:0.07, T:0.60
Consensus pattern (12 bp):
CTATTATTATTG
Found at i:96723996 original size:21 final size:21
Alignment explanation
Indices: 96723963--96724016 Score: 62
Period size: 18 Copynumber: 2.7 Consensus size: 21
96723953 TTGTTTTTAT
*
96723963 TATTATT-TATATTATCGTTAG
1 TATTATTAT-TATTATCCTTAG
96723984 TATTATTATTA-T-TCCTTAG
1 TATTATTATTATTATCCTTAG
96724003 T-TTATTATTATTAT
1 TATTATTATTATTAT
96724017 TACTTTATCG
Statistics
Matches: 29, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
18 9 0.31
19 8 0.28
20 2 0.07
21 9 0.31
22 1 0.03
ACGTcount: A:0.28, C:0.06, G:0.06, T:0.61
Consensus pattern (21 bp):
TATTATTATTATTATCCTTAG
Found at i:96726282 original size:46 final size:44
Alignment explanation
Indices: 96726139--96726282 Score: 114
Period size: 46 Copynumber: 3.1 Consensus size: 44
96726129 CCCACCCATA
*
96726139 AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTA-CATCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A---ACCATCT
* * * * * *
96726186 CA-CGAACTCAGACTCAACTCAACGAGTTCGAACATTCGCATCCAT-A
1 -AGTGAACTCGGACTCAACTCAACGAGTTCG--GATGC-CAACCATCT
96726232 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CAACCAT-CT
96726278 AGTGA
1 AGTGA
96726283 CATGTCACTT
Statistics
Matches: 75, Mismatches: 14, Indels: 16
0.71 0.13 0.15
Matches are distributed among these distances:
44 9 0.12
45 1 0.01
46 31 0.41
47 28 0.37
48 1 0.01
49 4 0.05
50 1 0.01
ACGTcount: A:0.31, C:0.29, G:0.19, T:0.22
Consensus pattern (44 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCAACCATCT
Found at i:96726854 original size:20 final size:18
Alignment explanation
Indices: 96726820--96726856 Score: 56
Period size: 20 Copynumber: 1.9 Consensus size: 18
96726810 GCAACTCATA
96726820 ATTTCAACTATTTTACAC
1 ATTTCAACTATTTTACAC
96726838 ATTTACAACTCATTTTACA
1 ATTT-CAACT-ATTTTACA
96726857 ACTTAGCAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 4 0.24
19 5 0.29
20 8 0.47
ACGTcount: A:0.35, C:0.22, G:0.00, T:0.43
Consensus pattern (18 bp):
ATTTCAACTATTTTACAC
Found at i:96727568 original size:3 final size:3
Alignment explanation
Indices: 96727554--96727642 Score: 74
Period size: 3 Copynumber: 29.3 Consensus size: 3
96727544 ACTTATTTTC
* * *
96727554 TAT TAT TGT TAT TAT TAA TA- TAC TAT TAT TAT TAT TAT TAAT GTAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T-AT -TAT
* * * *
96727600 TGT TAT TAT TAT TTT CTAC T-T TAT TAT TAT TAT TAT TAC TAT T
1 TAT TAT TAT TAT TAT -TAT TAT TAT TAT TAT TAT TAT TAT TAT T
96727643 GCTATCATCA
Statistics
Matches: 69, Mismatches: 12, Indels: 10
0.76 0.13 0.11
Matches are distributed among these distances:
2 3 0.04
3 60 0.87
4 5 0.07
5 1 0.01
ACGTcount: A:0.30, C:0.04, G:0.03, T:0.62
Consensus pattern (3 bp):
TAT
Found at i:96727611 original size:20 final size:20
Alignment explanation
Indices: 96727557--96727643 Score: 79
Period size: 20 Copynumber: 4.2 Consensus size: 20
96727547 TATTTTCTAT
*
96727557 TATTGTTATTATTAATATAC
1 TATTGTTATTATTATTATAC
* *
96727577 TATTATTATTATTATTA-ATG
1 TATTGTTATTATTATTATA-C
*
96727597 TATTGTTATTATTATT-TTC
1 TATTGTTATTATTATTATAC
*
96727616 TACTTTATTATTATTATTATTAC
1 TA--TTGTTATTATTATTA-TAC
96727639 TATTG
1 TATTG
96727644 CTATCATCAT
Statistics
Matches: 52, Mismatches: 9, Indels: 11
0.72 0.12 0.15
Matches are distributed among these distances:
19 3 0.06
20 30 0.58
21 15 0.29
23 4 0.08
ACGTcount: A:0.30, C:0.05, G:0.05, T:0.61
Consensus pattern (20 bp):
TATTGTTATTATTATTATAC
Found at i:96729560 original size:46 final size:46
Alignment explanation
Indices: 96729503--96729600 Score: 169
Period size: 46 Copynumber: 2.1 Consensus size: 46
96729493 ATGTTGTGGT
* *
96729503 AGAGACAGGGTCGATCAAATCGTCTGTAGGTACATAAAATGCTTGA
1 AGAGATAGGGTCGATCAAATCGTCTGTAGGTACATAAAATACTTGA
96729549 AGAGATAGGGTCGATCAAATCGTCTGTAGGTACATAAAATACTTGA
1 AGAGATAGGGTCGATCAAATCGTCTGTAGGTACATAAAATACTTGA
*
96729595 ATAGAT
1 AGAGAT
96729601 GATATGTATC
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
46 49 1.00
ACGTcount: A:0.37, C:0.13, G:0.24, T:0.26
Consensus pattern (46 bp):
AGAGATAGGGTCGATCAAATCGTCTGTAGGTACATAAAATACTTGA
Found at i:96732970 original size:63 final size:62
Alignment explanation
Indices: 96732871--96732998 Score: 247
Period size: 63 Copynumber: 2.0 Consensus size: 62
96732861 ATCTAATTTA
96732871 TAATATAATAATCTTTATAATAGTTTTACCCGATAATTGATATATATGCTTATAAAAATAAAT
1 TAATATAATAATCTTTATAATAGTTTTACCCGATAATTGATATATATGCTTAT-AAAATAAAT
96732934 TAATATAATAATCTTTATAATAGTTTTACCCGATAATTGATATATATGCTTATAAAATAAAT
1 TAATATAATAATCTTTATAATAGTTTTACCCGATAATTGATATATATGCTTATAAAATAAAT
96732996 TAA
1 TAA
96732999 GAGCTTTTAA
Statistics
Matches: 65, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
62 12 0.18
63 53 0.82
ACGTcount: A:0.45, C:0.08, G:0.06, T:0.41
Consensus pattern (62 bp):
TAATATAATAATCTTTATAATAGTTTTACCCGATAATTGATATATATGCTTATAAAATAAAT
Found at i:96735645 original size:20 final size:20
Alignment explanation
Indices: 96735622--96735664 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
96735612 AACTATTTAA
** *
96735622 ATAATATTATTTGAATAGTT
1 ATAATATTAAATGAATAATT
96735642 ATAATATTAAATGAATAATT
1 ATAATATTAAATGAATAATT
96735662 ATA
1 ATA
96735665 TGTTTATTTT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.49, C:0.00, G:0.07, T:0.44
Consensus pattern (20 bp):
ATAATATTAAATGAATAATT
Found at i:96735645 original size:32 final size:32
Alignment explanation
Indices: 96735603--96735663 Score: 81
Period size: 32 Copynumber: 1.9 Consensus size: 32
96735593 TTTTTTGAAA
96735603 AATAATTATAACTATTTAAAT-AAT-ATTATTTG
1 AATAATTATAA-TA-TTAAATGAATAATTATTTG
*
96735635 AATAGTTATAATATTAAATGAATAATTAT
1 AATAATTATAATATTAAATGAATAATTAT
96735664 ATGTTTATTT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
30 6 0.23
31 5 0.19
32 15 0.58
ACGTcount: A:0.49, C:0.02, G:0.05, T:0.44
Consensus pattern (32 bp):
AATAATTATAATATTAAATGAATAATTATTTG
Found at i:96735815 original size:42 final size:42
Alignment explanation
Indices: 96735751--96735836 Score: 145
Period size: 42 Copynumber: 2.0 Consensus size: 42
96735741 ATAAATAGGA
96735751 ATGAGATTTCATTTAGAAATCACACCAACAAATTCTAATATT
1 ATGAGATTTCATTTAGAAATCACACCAACAAATTCTAATATT
* * *
96735793 ATGATATTTCATTTGGAAATCACACCAACAAATTTTAATATT
1 ATGAGATTTCATTTAGAAATCACACCAACAAATTCTAATATT
96735835 AT
1 AT
96735837 TTCTTTCCTT
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
42 41 1.00
ACGTcount: A:0.42, C:0.15, G:0.07, T:0.36
Consensus pattern (42 bp):
ATGAGATTTCATTTAGAAATCACACCAACAAATTCTAATATT
Found at i:96736858 original size:20 final size:20
Alignment explanation
Indices: 96736828--96736881 Score: 74
Period size: 20 Copynumber: 2.7 Consensus size: 20
96736818 AAGGGCACAT
*
96736828 GCCCGTGTGGCCTGGGACAC
1 GCCCGTGTGGCCTGGAACAC
*
96736848 GCTCC-TGTGGCCTGGAACAT
1 GC-CCGTGTGGCCTGGAACAC
96736868 GCCCGTGTGGCCTG
1 GCCCGTGTGGCCTG
96736882 CCCATGGGCA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
19 2 0.07
20 26 0.87
21 2 0.07
ACGTcount: A:0.09, C:0.33, G:0.37, T:0.20
Consensus pattern (20 bp):
GCCCGTGTGGCCTGGAACAC
Found at i:96738629 original size:64 final size:64
Alignment explanation
Indices: 96738528--96738655 Score: 238
Period size: 64 Copynumber: 2.0 Consensus size: 64
96738518 AAAAAGAGAA
* *
96738528 AGGTGATTTTTTGGCTTGCGATTTCTATACTCCTTTTCTTTTTCTTCTTTCTTTTAATGATTTT
1 AGGTGATTTTTTGGCTTGCAATTTCTATACTCATTTTCTTTTTCTTCTTTCTTTTAATGATTTT
96738592 AGGTGATTTTTTGGCTTGCAATTTCTATACTCATTTTCTTTTTCTTCTTTCTTTTAATGATTTT
1 AGGTGATTTTTTGGCTTGCAATTTCTATACTCATTTTCTTTTTCTTCTTTCTTTTAATGATTTT
96738656 TACTCAAATC
Statistics
Matches: 62, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
64 62 1.00
ACGTcount: A:0.14, C:0.15, G:0.12, T:0.59
Consensus pattern (64 bp):
AGGTGATTTTTTGGCTTGCAATTTCTATACTCATTTTCTTTTTCTTCTTTCTTTTAATGATTTT
Found at i:96741040 original size:131 final size:130
Alignment explanation
Indices: 96740807--96741276 Score: 563
Period size: 131 Copynumber: 3.6 Consensus size: 130
96740797 TAACTATTCA
* * ** *
96740807 TTTAAAAATTCTTTAAAACGGAGGCAATACTCGGTGTTTGGCAATTC-GGGAATCGTGCCCTATC
1 TTTAAAAATTCTTCAAAACGAAGGCAATGTTCGATGTTTGGCAATTCGGGGAATCGTGCCCTATC
* * * * *
96740871 GTGCTGGGTTACGATTTCTCGTTTATTCAAAACAATCGAGTATTCCTTTGGGATTTCACTCATGC
66 GTGCTGGGTTGCGATTTCTTGTTTGTTCAAAATAATCGAATATTCCTTTGGGATTTCACTCATG-
96740936 T
130 T
* *
96740937 TTTAAAAATTCTTCAAAATGAAGGTAATGTTCGATGTTTGGCAATTCGGGGAATCGTGCCCTATC
1 TTTAAAAATTCTTCAAAACGAAGGCAATGTTCGATGTTTGGCAATTCGGGGAATCGTGCCCTATC
* * *
96741002 GTGCTGGGTTGCGATTTCTTGTTTGTTCAAAATAATCGAACATTCCTTTGGAATTTCATTCATGT
66 GTGCTGGGTTGCGATTTCTTGTTTGTTCAAAATAATCGAATATTCCTTTGGGATTTCACTCATGT
* * *
96741067 CTTTAAAAAATCTTCAAAACGAAGGTAATGTTTGATGTTTGGCAATTCGGGGAATCGTGCCCTAT
1 -TTTAAAAATTCTTCAAAACGAAGGCAATGTTCGATGTTTGGCAATTCGGGGAATCGTGCCCTAT
* * * * *
96741132 CGTGCTGGGTTGCAATCTCCTGTTTGTTCCAAATAATCGAATATTCCTTTAGGATTTCACTCATG
65 CGTGCTGGGTTGCGATTTCTTGTTTGTTCAAAATAATCGAATATTCCTTTGGGATTTCACTCATG
96741197 T
130 T
* ** * * ** * * * *
96741198 TCTCCAAATTC-T-AAAA-TAAGGCAATGTCCGATGGATAGAAATTCGAGGAGTCGTGCCCTA-C
1 TTTAAAAATTCTTCAAAACGAAGGCAATGTTCGATGTTTGGCAATTCGGGGAATCGTGCCCTATC
*
96741259 TGTGCTGGGTTTCGATTT
66 -GTGCTGGGTTGCGATTT
96741277 TCTCATTGGA
Statistics
Matches: 294, Mismatches: 43, Indels: 9
0.85 0.12 0.03
Matches are distributed among these distances:
126 1 0.00
127 48 0.16
128 4 0.01
129 1 0.00
130 48 0.16
131 192 0.65
ACGTcount: A:0.26, C:0.18, G:0.21, T:0.36
Consensus pattern (130 bp):
TTTAAAAATTCTTCAAAACGAAGGCAATGTTCGATGTTTGGCAATTCGGGGAATCGTGCCCTATC
GTGCTGGGTTGCGATTTCTTGTTTGTTCAAAATAATCGAATATTCCTTTGGGATTTCACTCATGT
Found at i:96744952 original size:138 final size:138
Alignment explanation
Indices: 96744699--96744971 Score: 451
Period size: 138 Copynumber: 2.0 Consensus size: 138
96744689 ATAGATACCA
*
96744699 TTTCAACGGTTGAAACTCACCCCCTCCATCCGTCTAAAGCACTTTTAATTTGACCCCAAGTATAT
1 TTTCAACGCTTGAAACTCACCCCCTCCATCCGTCTAAAGCACTTTTAATTTGACCCCAAGTATAT
96744764 TTTCAACTTCTTGGTGAAATTGAGGAAAGACTGTAACAACATCTATCTTTTTCTTCAAAAAATAA
66 TTTCAACTTCTTGGTGAAATTGAGGAAAGACTGTAACAACATCTATCTTTTTCTTCAAAAAATAA
*
96744829 TGCCACAT
131 AGCCACAT
* * *
96744837 TTTCAATGCTTGAAACTCACCCCCTCCATCTGTCTAAAGCACTTTTAATTTGACCCTAAGTAT-T
1 TTTCAACGCTTGAAACTCACCCCCTCCATCCGTCTAAAGCACTTTTAATTTGACCCCAAGTATAT
* *
96744901 CTTTCAACTTGTTGGTGAAATTGAGGAAAGACTGTAGCAACATCTGA-CTTTTTCTTCAAAAAAT
66 -TTTCAACTTCTTGGTGAAATTGAGGAAAGACTGTAACAACATCT-ATCTTTTTCTTCAAAAAAT
96744965 AAAGCCA
129 AAAGCCA
96744972 TGTGTATCTA
Statistics
Matches: 126, Mismatches: 7, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
137 1 0.01
138 124 0.98
139 1 0.01
ACGTcount: A:0.32, C:0.23, G:0.12, T:0.33
Consensus pattern (138 bp):
TTTCAACGCTTGAAACTCACCCCCTCCATCCGTCTAAAGCACTTTTAATTTGACCCCAAGTATAT
TTTCAACTTCTTGGTGAAATTGAGGAAAGACTGTAACAACATCTATCTTTTTCTTCAAAAAATAA
AGCCACAT
Found at i:96751139 original size:28 final size:28
Alignment explanation
Indices: 96751093--96751161 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
96751083 TTTAAAACCC
*
96751093 TAGGGGT-ATATCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
96751120 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
96751148 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
96751162 TGATCTACGC
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 7 0.17
28 33 0.82
ACGTcount: A:0.19, C:0.10, G:0.28, T:0.43
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTGCTCTT
Found at i:96752813 original size:20 final size:20
Alignment explanation
Indices: 96752790--96752827 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
96752780 CACATCCAAA
*
96752790 TACAAAATTTTAAAAATCTT
1 TACAAAATATTAAAAATCTT
*
96752810 TACAAAATATTGAAAATC
1 TACAAAATATTAAAAATC
96752828 GCGAATAAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.11, G:0.03, T:0.34
Consensus pattern (20 bp):
TACAAAATATTAAAAATCTT
Found at i:96754149 original size:22 final size:22
Alignment explanation
Indices: 96754121--96754170 Score: 100
Period size: 22 Copynumber: 2.3 Consensus size: 22
96754111 TTACTCATTT
96754121 GAAAAGCGTAAATCATTTTCCG
1 GAAAAGCGTAAATCATTTTCCG
96754143 GAAAAGCGTAAATCATTTTCCG
1 GAAAAGCGTAAATCATTTTCCG
96754165 GAAAAG
1 GAAAAG
96754171 AGCTCATCTG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.40, C:0.16, G:0.20, T:0.24
Consensus pattern (22 bp):
GAAAAGCGTAAATCATTTTCCG
Found at i:96755010 original size:14 final size:14
Alignment explanation
Indices: 96754988--96755026 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 14
96754978 CTAGAAAAGT
*
96754988 AAATCATTTTCCAG
1 AAATCATTTTCCAA
* *
96755002 AAATTATTTTTCAA
1 AAATCATTTTCCAA
96755016 AAATCATTTTC
1 AAATCATTTTC
96755027 AATGAAACAA
Statistics
Matches: 20, Mismatches: 5, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.38, C:0.15, G:0.03, T:0.44
Consensus pattern (14 bp):
AAATCATTTTCCAA
Found at i:96757038 original size:17 final size:17
Alignment explanation
Indices: 96757018--96757116 Score: 135
Period size: 17 Copynumber: 5.6 Consensus size: 17
96757008 CAATGATATG
96757018 CAATCTTAGATATGATA
1 CAATCTTAGATATGATA
*
96757035 CAATCTTAGATATGATTG
1 CAATCTTAGATATGA-TA
96757053 CAATCTTAGATATGATA
1 CAATCTTAGATATGATA
*
96757070 CAATCTTAGATATGATTG
1 CAATCTTAGATATGA-TA
*
96757088 CAATCTTAGATAGGATATA
1 CAATCTTAGATATG--ATA
96757107 CAATCTTAGA
1 CAATCTTAGA
96757117 AGATATGATT
Statistics
Matches: 73, Mismatches: 5, Indels: 6
0.87 0.06 0.07
Matches are distributed among these distances:
17 31 0.42
18 30 0.41
19 11 0.15
20 1 0.01
ACGTcount: A:0.38, C:0.12, G:0.14, T:0.35
Consensus pattern (17 bp):
CAATCTTAGATATGATA
Found at i:96757056 original size:35 final size:35
Alignment explanation
Indices: 96757010--96757116 Score: 178
Period size: 35 Copynumber: 3.0 Consensus size: 35
96757000 ATAATCTTCA
96757010 ATGATATGCAATCTTAGATATGATACAATCTTAGAT
1 ATGAT-TGCAATCTTAGATATGATACAATCTTAGAT
96757046 ATGATTGCAATCTTAGATATGATACAATCTTAGAT
1 ATGATTGCAATCTTAGATATGATACAATCTTAGAT
*
96757081 ATGATTGCAATCTTAGATAGGATATACAATCTTAGA
1 ATGATTGCAATCTTAGATATG--ATACAATCTTAGA
96757117 AGATATGATT
Statistics
Matches: 68, Mismatches: 1, Indels: 3
0.94 0.01 0.04
Matches are distributed among these distances:
35 50 0.74
36 5 0.07
37 13 0.19
ACGTcount: A:0.38, C:0.11, G:0.15, T:0.36
Consensus pattern (35 bp):
ATGATTGCAATCTTAGATATGATACAATCTTAGAT
Found at i:96757058 original size:18 final size:18
Alignment explanation
Indices: 96757018--96757116 Score: 148
Period size: 18 Copynumber: 5.6 Consensus size: 18
96757008 CAATGATATG
96757018 CAATCTTAGATATGA-TA
1 CAATCTTAGATATGATTA
*
96757035 CAATCTTAGATATGATTG
1 CAATCTTAGATATGATTA
96757053 CAATCTTAGATATGA-TA
1 CAATCTTAGATATGATTA
*
96757070 CAATCTTAGATATGATTG
1 CAATCTTAGATATGATTA
*
96757088 CAATCTTAGATAGGATATA
1 CAATCTTAGATATGAT-TA
96757107 CAATCTTAGA
1 CAATCTTAGA
96757117 AGATATGATT
Statistics
Matches: 74, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
17 31 0.42
18 32 0.43
19 11 0.15
ACGTcount: A:0.38, C:0.12, G:0.14, T:0.35
Consensus pattern (18 bp):
CAATCTTAGATATGATTA
Found at i:96757630 original size:17 final size:18
Alignment explanation
Indices: 96757601--96757649 Score: 50
Period size: 17 Copynumber: 2.9 Consensus size: 18
96757591 CAATATATTT
*
96757601 TATATT-TTTTTATATAA
1 TATATTATTATTATATAA
*
96757618 T-TATTATTCTTATA-AA
1 TATATTATTATTATATAA
*
96757634 TATATTTTTATTATAT
1 TATATTATTATTATAT
96757650 TTTAAATTTA
Statistics
Matches: 26, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
16 7 0.27
17 19 0.73
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (18 bp):
TATATTATTATTATATAA
Found at i:96760348 original size:2 final size:2
Alignment explanation
Indices: 96760343--96760382 Score: 71
Period size: 2 Copynumber: 20.0 Consensus size: 2
96760333 TATATATATA
*
96760343 TG TG TG TG TG TG TG TG TG TG TG TG TG TG CG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
96760383 AACAACAATT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.00, C:0.03, G:0.50, T:0.47
Consensus pattern (2 bp):
TG
Found at i:96762029 original size:27 final size:28
Alignment explanation
Indices: 96761999--96762058 Score: 70
Period size: 28 Copynumber: 2.2 Consensus size: 28
96761989 TTTTATAAAT
* *
96761999 TATTTATGTTATG-TTTTATATA-TATA
1 TATTTATGTTAAGCTTTTACATATTATA
*
96762025 CTATTTATTTTAAGCTTTTACATATTATA
1 -TATTTATGTTAAGCTTTTACATATTATA
96762054 TATTT
1 TATTT
96762059 TAAATTTTTA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
27 11 0.39
28 13 0.46
29 4 0.14
ACGTcount: A:0.30, C:0.05, G:0.05, T:0.60
Consensus pattern (28 bp):
TATTTATGTTAAGCTTTTACATATTATA
Found at i:96762089 original size:26 final size:26
Alignment explanation
Indices: 96762040--96762099 Score: 68
Period size: 26 Copynumber: 2.3 Consensus size: 26
96762030 TATTTTAAGC
* * *
96762040 TTTTACATATTATATATTTTAAATT-
1 TTTTATATATTATATAGTTCAAATTA
*
96762065 TTTATATATATTATGTAGTTCAAATTA
1 TTT-TATATATTATATAGTTCAAATTA
96762092 TTTTATAT
1 TTTTATAT
96762100 GTCATTTATT
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
25 3 0.10
26 23 0.79
27 3 0.10
ACGTcount: A:0.35, C:0.03, G:0.03, T:0.58
Consensus pattern (26 bp):
TTTTATATATTATATAGTTCAAATTA
Found at i:96763037 original size:18 final size:18
Alignment explanation
Indices: 96763014--96763048 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
96763004 CCAAAAACAT
96763014 CATTTTAATAAACTAAAA
1 CATTTTAATAAACTAAAA
* *
96763032 CATTTTATTAAAGTAAA
1 CATTTTAATAAACTAAA
96763049 GGTGATCCGA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.51, C:0.09, G:0.03, T:0.37
Consensus pattern (18 bp):
CATTTTAATAAACTAAAA
Found at i:96765974 original size:19 final size:19
Alignment explanation
Indices: 96765950--96766003 Score: 74
Period size: 19 Copynumber: 2.8 Consensus size: 19
96765940 AGCGCCTCTT
96765950 TTTGCATT-CATTTCATTCA
1 TTTGCATTACATTTCA-TCA
96765969 TTTGCATTACATTTCATCA
1 TTTGCATTACATTTCATCA
* *
96765988 TATGCATTAAATTTCA
1 TTTGCATTACATTTCA
96766004 CGGAAAGACC
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
19 25 0.78
20 7 0.22
ACGTcount: A:0.28, C:0.19, G:0.06, T:0.48
Consensus pattern (19 bp):
TTTGCATTACATTTCATCA
Found at i:96773824 original size:44 final size:44
Alignment explanation
Indices: 96773730--96773848 Score: 132
Period size: 44 Copynumber: 2.7 Consensus size: 44
96773720 GTGAATTCAC
* * * * *
96773730 AAATCTTATCTCCCTAAGTAGTAGTGGAGTAAGCTGAAGATTGT
1 AAATCTTGTCTCCCTAAGCAGTAGTGGAGCAAGCTGAAGATGGA
* * *
96773774 AGATCTTGTCTCCCTAAGCAGTAGTGGAGC-AGATCGAATATGGA
1 AAATCTTGTCTCCCTAAGCAGTAGTGGAGCAAGCT-GAAGATGGA
* *
96773818 AAATCTTGTCTCTCTAAGCAATAGTGGAGCA
1 AAATCTTGTCTCCCTAAGCAGTAGTGGAGCA
96773849 TATTTAAGCC
Statistics
Matches: 62, Mismatches: 11, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
43 3 0.05
44 59 0.95
ACGTcount: A:0.31, C:0.17, G:0.24, T:0.29
Consensus pattern (44 bp):
AAATCTTGTCTCCCTAAGCAGTAGTGGAGCAAGCTGAAGATGGA
Found at i:96774047 original size:87 final size:88
Alignment explanation
Indices: 96773884--96774233 Score: 486
Period size: 87 Copynumber: 4.1 Consensus size: 88
96773874 TAAGCAGCAG
* * *
96773884 TGGAGCAG-TCGAAG-CACAATTCTTATCTCCTTGAAGTTTCAGCGGAGTAGATCGAAGCTACAA
1 TGGAGCGGCTCGAAGCCACAATTCTTATCTCCTTGAAGTTCCAGCAGAGTAGATCGAAGCTACAA
*
96773947 ATCTCTTCT-CCTGAAATGGCAC
66 ATCTCTTCTCCCTGAAATGGCAT
* * *
96773969 TAGAGCGGCTCAAAGCCATAATTCTTATCTCCTTGAAGTTCCAGCAGAGTAGATCGAAGCTACAA
1 TGGAGCGGCTCGAAGCCACAATTCTTATCTCCTTGAAGTTCCAGCAGAGTAGATCGAAGCTACAA
* *
96774034 ATCTTTTCT-CCTGAAATGGAAT
66 ATCTCTTCTCCCTGAAATGGCAT
* * * *
96774056 TGGAGC-GCTCGAAGCCACAATTCTTAT-T-CTTAAACTTTCAGCA-AGTA-ATCGGAA-CTAAA
1 TGGAGCGGCTCGAAGCCACAATTCTTATCTCCTTGAAGTTCCAGCAGAGTAGATC-GAAGCTACA
96774115 AATCTCTTCTCCCTGAAATGGCAT
65 AATCTCTTCTCCCTGAAATGGCAT
*
96774139 TGGAGCGGCTCGAAGCCACAATTCTTATCTCCTTGAAGTTCCAGCGGAGTAGATCGAAGCTACAA
1 TGGAGCGGCTCGAAGCCACAATTCTTATCTCCTTGAAGTTCCAGCAGAGTAGATCGAAGCTACAA
*
96774204 ATCTCTTCTCCCTGAAATGACAT
66 ATCTCTTCTCCCTGAAATGGCAT
96774227 TGGAGCG
1 TGGAGCG
96774234 ATTGAAGCAC
Statistics
Matches: 231, Mismatches: 24, Indels: 17
0.85 0.09 0.06
Matches are distributed among these distances:
82 16 0.07
83 25 0.11
84 33 0.14
85 8 0.03
86 35 0.15
87 77 0.33
88 37 0.16
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.27
Consensus pattern (88 bp):
TGGAGCGGCTCGAAGCCACAATTCTTATCTCCTTGAAGTTCCAGCAGAGTAGATCGAAGCTACAA
ATCTCTTCTCCCTGAAATGGCAT
Found at i:96774305 original size:44 final size:43
Alignment explanation
Indices: 96774163--96774686 Score: 214
Period size: 44 Copynumber: 11.8 Consensus size: 43
96774153 GCCACAATTC
* * * *
96774163 TTATCTCCTTGAAGTTCCAGCGGAGTAGA-TCGAAGCTACAAATCT
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGACT-GAAG-TACAAA-CT
* * * * *
96774208 CT-TCTCCCTGAA-ATGACATTGGAGC-GATTGAAGCACTAAAC-
1 TTATCTCCCTGAAGTTG-CAGTGGAGCAGACTGAAGTAC-AAACT
* * *
96774249 TTATCTACCTGAAGTTGCAGCGGAGCCGACTGAAGTTACAAACT
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAG-TACAAACT
* * * * *
96774293 TTATCTCTCTGAAGTTACAGTGGAGCAAATTGAAGATAC-AAGT
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAG-TACAAACT
*
96774336 CTTATCTCCCTAAAGTTGCAGTGGAGCAGACTGAAG-ACATTAA-T
1 -TTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGTACA--AACT
* * *
96774380 CTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGCTACAAACC
1 -TTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAG-TACAAACT
* * ** * **
96774425 TTATCTCCCTGAAATTACAGTGGAGCAGGTTGAAGATAGTAAGGT
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAG-TA-CAAACT
* * * * * *
96774470 CTTATTTCCCTGAAGTTACAGTAGAGCAGATTAAAGTTATAAA-T
1 -TTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAG-TACAAACT
* * * * *
96774514 CTTATAC-CTCTGAAGTTGCAGTAGG-TC-GAATCAAATCTACCATGGTGAA-T
1 -TTAT-CTCCCTGAAGTTGCAGT-GGAGCAGACT-GAA-GTA-CA-----AACT
* * *
96774564 CTTATCTCCTTGAAGTTGCAGTGGAGCAGATTGAAGCCACAAACT
1 -TTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAG-TACAAACT
* ** *
96774609 TTATCTCCCTGAAATTGCAGTAGG-GCAGGTTGAAGTTAC-AAGT
1 TTATCTCCCTGAAGTTGCAGT-GGAGCAGACTGAAG-TACAAACT
* * *
96774652 CTTATCTCCCTGAAGTTGTAGCGGAGCAAACTGAA
1 -TTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAA
96774687 ACCACAAATC
Statistics
Matches: 370, Mismatches: 74, Indels: 71
0.72 0.14 0.14
Matches are distributed among these distances:
41 1 0.00
42 21 0.06
43 34 0.09
44 233 0.63
45 13 0.04
46 35 0.09
49 5 0.01
50 25 0.07
51 3 0.01
ACGTcount: A:0.31, C:0.20, G:0.21, T:0.28
Consensus pattern (43 bp):
TTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGTACAAACT
Found at i:96774422 original size:132 final size:133
Alignment explanation
Indices: 96774210--96774499 Score: 345
Period size: 132 Copynumber: 2.2 Consensus size: 133
96774200 ACAAATCTCT
* * * *
96774210 TCTCCCTGAAA-TGACATTGGAGC-GATTGAAGCACTAAACTTATCTACCTGAAGTTGCAGCGGA
1 TCTCCCT-AAAGTTACAGTGGAGCAGACTGAAGCACTAAACTTATCTACCTAAAGTTGCAGCGGA
* * * * *
96774273 GCCGACTGAAGTTACAAACTTTATCTCTCTGAAGTTACAGTGGAGCAAATTGAAGATA-CAA-GT
65 GCAGACTGAAGCTACAAACCTTATCTCCCTGAAATTACAGTGGAGCAAATTGAAGATAGCAAGGT
96774336 CTTA
130 CTTA
* * * * *
96774340 TCTCCCTAAAGTTGCAGTGGAGCAGACTGAAGACATTAATCTTATCTCCCTAAAGTTGCAGTGGA
1 TCTCCCTAAAGTTACAGTGGAGCAGACTGAAG-CACTAAACTTATCTACCTAAAGTTGCAGCGGA
* ** *
96774405 GCAGATTGAAGCTACAAACCTTATCTCCCTGAAATTACAGTGGAGCAGGTTGAAGATAGTAAGGT
65 GCAGACTGAAGCTACAAACCTTATCTCCCTGAAATTACAGTGGAGCAAATTGAAGATAGCAAGGT
96774470 CTTA
130 CTTA
* * *
96774474 TTTCCCTGAAGTTACAGTAGAGCAGA
1 TCTCCCTAAAGTTACAGTGGAGCAGA
96774500 TTAAAGTTAT
Statistics
Matches: 133, Mismatches: 22, Indels: 6
0.83 0.14 0.04
Matches are distributed among these distances:
129 3 0.02
130 16 0.12
131 7 0.05
132 77 0.58
133 2 0.02
134 28 0.21
ACGTcount: A:0.32, C:0.20, G:0.22, T:0.27
Consensus pattern (133 bp):
TCTCCCTAAAGTTACAGTGGAGCAGACTGAAGCACTAAACTTATCTACCTAAAGTTGCAGCGGAG
CAGACTGAAGCTACAAACCTTATCTCCCTGAAATTACAGTGGAGCAAATTGAAGATAGCAAGGTC
TTA
Found at i:96774527 original size:90 final size:89
Alignment explanation
Indices: 96774210--96774518 Score: 276
Period size: 88 Copynumber: 3.5 Consensus size: 89
96774200 ACAAATCTCT
* * * * * * *
96774210 TCTCCCTGAAATGACATTGGAGC-GATTGAAG-CACTAAA-CTTATCTACCTG-AAGTTGCAGCG
1 TCTCCCTGAAGTTACAGTGGAGCAGATTGAAGATAC-AAATCTTATCTCCCTGAAAGTTACAGTG
*
96774271 GAGCCGACTGAAGTTACA--AA-CTTTA
65 GAGCAGACTGAAG--ACAGTAATC-TTA
* * * *
96774296 TCTCTCTGAAGTTACAGTGGAGCAAATTGAAGATACAAGTCTTATCTCCCT-AAAGTTGCAGTGG
1 TCTCCCTGAAGTTACAGTGGAGCAGATTGAAGATACAAATCTTATCTCCCTGAAAGTTACAGTGG
*
96774360 AGCAGACTGAAGACATTAATCTTA
66 AGCAGACTGAAGACAGTAATCTTA
* * * *
96774384 TCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGCTACAAACCTTATCTCCCTGAAA-TTACAGTGG
1 TCTCCCTGAAGTTACAGTGGAGCAGATTGAAGATACAAATCTTATCTCCCTGAAAGTTACAGTGG
** *
96774448 AGCAGGTTGAAGATAGTAAGGTCTTA
66 AGCAGACTGAAGACAGTAA--TCTTA
* * * * *
96774474 TTTCCCTGAAGTTACAGTAGAGCAGATTAAAGTTATAAATCTTAT
1 TCTCCCTGAAGTTACAGTGGAGCAGATTGAAGATACAAATCTTAT
96774519 ACCTCTGAAG
Statistics
Matches: 183, Mismatches: 30, Indels: 16
0.80 0.13 0.07
Matches are distributed among these distances:
86 22 0.12
87 9 0.05
88 106 0.58
89 4 0.02
90 42 0.23
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (89 bp):
TCTCCCTGAAGTTACAGTGGAGCAGATTGAAGATACAAATCTTATCTCCCTGAAAGTTACAGTGG
AGCAGACTGAAGACAGTAATCTTA
Found at i:96774631 original size:94 final size:90
Alignment explanation
Indices: 96774293--96774633 Score: 259
Period size: 88 Copynumber: 3.8 Consensus size: 90
96774283 GTTACAAACT
* * * * *
96774293 TTATCTCTCTGAAGTTACAGTGGAGCAAATTGAAGATAC-AAGTCTTATCTCCCT-AAAGTTGCA
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTACAAACT-TTATCTCCCTGAAA-TTGCA
* * * * *
96774356 GT--GGAGCAGACTGAAGACATTAATC
64 GTAGGGAGCAAATTGAACATAGTAATC
* * *
96774381 TTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGCTACAAACCTTATCTCCCTGAAATTACAGT
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTACAAACTTTATCTCCCTGAAATTGCAGT
** *
96774446 --GGAGCAGGTTGAAGATAGTAAGGTC
66 AGGGAGCAAATTGAACATAGTAA--TC
* * * * * * * *
96774471 TTATTTCCCTGAAGTTACAGTAGAGCAGATTAAAGTTATAAA-TCTTATAC-CTCTGAAGTTGCA
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTACAAACT-TTAT-CTCCCTGAAATTGCA
* * *
96774534 GTAGGTCGAATCAAATCT-ACCATGGTGAATC
64 GTAGG--G-AGCAAAT-TGAACATAGT-AATC
* *
96774565 TTATCTCCTTGAAGTTGCAGTGGAGCAGATTGAAGCCACAAACTTTATCTCCCTGAAATTGCAGT
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTACAAACTTTATCTCCCTGAAATTGCAGT
96774630 AGGG
66 AGGG
96774634 CAGGTTGAAG
Statistics
Matches: 199, Mismatches: 39, Indels: 26
0.75 0.15 0.10
Matches are distributed among these distances:
88 67 0.34
89 5 0.03
90 53 0.27
91 1 0.01
92 2 0.01
93 1 0.01
94 57 0.29
95 10 0.05
96 3 0.02
ACGTcount: A:0.31, C:0.18, G:0.21, T:0.29
Consensus pattern (90 bp):
TTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTACAAACTTTATCTCCCTGAAATTGCAGT
AGGGAGCAAATTGAACATAGTAATC
Found at i:96775609 original size:163 final size:159
Alignment explanation
Indices: 96775344--96775663 Score: 588
Period size: 163 Copynumber: 2.0 Consensus size: 159
96775334 GTTCTTCACT
96775344 TTTTTCTCTTTATTTTCCTCTTTATTTCTTACTTATTTTTTATCTATTATACTAATATACAAAAC
1 TTTTTCTCTTTATTTTCCTCTTTATTTCTTACTTATTTTTTATCTATTATACTAATATACAAAAC
96775409 AAAAGGAAAGATCTCTTACCTGTCGATTGGCACCGATCTAATCGGT-GTTGCTTCTCCGTCCAAG
66 AAAAGGAAAGATCTCTTACCTGTCGATTGGCACCGATCTAATCGGTGGTTGCTTCTCCGTCCAAG
96775473 GGCAAACGAATCCCTAGGGATCTGACTTG
131 GGCAAACGAATCCCTAGGGATCTGACTTG
96775502 TTTTTCTCTTTTATTTTCCTCTTTTATTTCTTACTTATTTTTTTTATCTATTATACTAATATACA
1 TTTTTCTC-TTTATTTTCCTC-TTTATTTCTTACTTA--TTTTTTATCTATTATACTAATATACA
96775567 AAACAAAAAGGAAAGATCTCTTACCTGTCGATTGGCACCGATCTAATCGGTGGTTGCTTCTCCGT
62 AAAC-AAAAGGAAAGATCTCTTACCTGTCGATTGGCACCGATCTAATCGGTGGTTGCTTCTCCGT
96775632 CCAAGGGCAAACGAATCCCTAGGGATCTGACT
126 CCAAGGGCAAACGAATCCCTAGGGATCTGACT
96775664 AAGCCTCGAC
Statistics
Matches: 156, Mismatches: 0, Indels: 6
0.96 0.00 0.04
Matches are distributed among these distances:
158 8 0.05
159 12 0.08
160 15 0.10
162 30 0.19
163 46 0.29
164 45 0.29
ACGTcount: A:0.25, C:0.21, G:0.14, T:0.40
Consensus pattern (159 bp):
TTTTTCTCTTTATTTTCCTCTTTATTTCTTACTTATTTTTTATCTATTATACTAATATACAAAAC
AAAAGGAAAGATCTCTTACCTGTCGATTGGCACCGATCTAATCGGTGGTTGCTTCTCCGTCCAAG
GGCAAACGAATCCCTAGGGATCTGACTTG
Found at i:96782001 original size:24 final size:25
Alignment explanation
Indices: 96781971--96782061 Score: 96
Period size: 24 Copynumber: 3.6 Consensus size: 25
96781961 TCTTAAATTA
*
96781971 TTTTATAAT-TTATTTATTTTATGT
1 TTTTATAATATTATTTATTTTAAGT
96781995 TTTTATATATATACTATTTATTTTAAGT
1 TTTTATA-ATAT--TATTTATTTTAAGT
* * *
96782023 TTTTA-CATATTATATATTTTAAAT
1 TTTTATAATATTATTTATTTTAAGT
96782047 TTTTATATATATTAT
1 TTTTATA-ATATTAT
96782062 GTAGTTCAAA
Statistics
Matches: 56, Mismatches: 5, Indels: 10
0.79 0.07 0.14
Matches are distributed among these distances:
24 24 0.43
25 2 0.04
26 12 0.21
28 18 0.32
ACGTcount: A:0.32, C:0.02, G:0.02, T:0.64
Consensus pattern (25 bp):
TTTTATAATATTATTTATTTTAAGT
Found at i:96782012 original size:28 final size:27
Alignment explanation
Indices: 96781981--96782058 Score: 99
Period size: 28 Copynumber: 3.0 Consensus size: 27
96781971 TTTTATAATT
*
96781981 TATTTATTTTATGTTTTTATATATATA
1 TATTTATTTTAAGTTTTTATATATATA
*
96782008 CTATTTATTTTAAGTTTTTACATAT-TA
1 -TATTTATTTTAAGTTTTTATATATATA
*
96782035 TA--TATTTTAAATTTTTATATATAT
1 TATTTATTTTAAGTTTTTATATATAT
96782059 TATGTAGTTC
Statistics
Matches: 45, Mismatches: 4, Indels: 5
0.83 0.07 0.09
Matches are distributed among these distances:
24 18 0.40
25 1 0.02
26 2 0.04
27 2 0.04
28 22 0.49
ACGTcount: A:0.32, C:0.03, G:0.03, T:0.63
Consensus pattern (27 bp):
TATTTATTTTAAGTTTTTATATATATA
Found at i:96782072 original size:26 final size:26
Alignment explanation
Indices: 96782023--96782082 Score: 68
Period size: 26 Copynumber: 2.3 Consensus size: 26
96782013 TATTTTAAGT
* * *
96782023 TTTTACATATTATATATTTTAAATT-
1 TTTTATATATTATATAGTTCAAATTA
*
96782048 TTTATATATATTATGTAGTTCAAATTA
1 TTT-TATATATTATATAGTTCAAATTA
96782075 TTTTATAT
1 TTTTATAT
96782083 GTCATTTATT
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
25 3 0.10
26 23 0.79
27 3 0.10
ACGTcount: A:0.35, C:0.03, G:0.03, T:0.58
Consensus pattern (26 bp):
TTTTATATATTATATAGTTCAAATTA
Found at i:96782079 original size:52 final size:50
Alignment explanation
Indices: 96782023--96782166 Score: 112
Period size: 52 Copynumber: 2.7 Consensus size: 50
96782013 TATTTTAAGT
96782023 TTTTACATATTATATATTTTAAATTTTTATATATATTATGTAGTTCAAATTA
1 TTTTA-ATATTAT-TATTTTAAATTTTTATATATATTATGTAGTTCAAATTA
*** * * * *
96782075 TTTT-ATATGTCATTTATTTTAAAAAAATT-TATATATTGTTTATTTCAAATTG
1 TTTTAATAT-T-A-TTATTTT-AAATTTTTATATATATTATGTAGTTCAAATTA
* *
96782127 TTTTATTATTATTCACTTTAAATTTTTATATTTATATTAT
1 TTTTAATATTATT-ATTTTAAATTTTTATA--TATATTAT
96782167 TTATTTGAGA
Statistics
Matches: 70, Mismatches: 13, Indels: 17
0.70 0.13 0.17
Matches are distributed among these distances:
50 11 0.16
51 8 0.11
52 35 0.50
53 16 0.23
ACGTcount: A:0.34, C:0.04, G:0.03, T:0.58
Consensus pattern (50 bp):
TTTTAATATTATTATTTTAAATTTTTATATATATTATGTAGTTCAAATTA
Found at i:96786370 original size:15 final size:16
Alignment explanation
Indices: 96786350--96786387 Score: 69
Period size: 16 Copynumber: 2.4 Consensus size: 16
96786340 CAATTACATG
96786350 TTTTGTTC-AATTAAC
1 TTTTGTTCTAATTAAC
96786365 TTTTGTTCTAATTAAC
1 TTTTGTTCTAATTAAC
96786381 TTTTGTT
1 TTTTGTT
96786388 TTGTTCAATT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
15 8 0.36
16 14 0.64
ACGTcount: A:0.21, C:0.11, G:0.08, T:0.61
Consensus pattern (16 bp):
TTTTGTTCTAATTAAC
Found at i:96786855 original size:23 final size:24
Alignment explanation
Indices: 96786825--96786887 Score: 67
Period size: 23 Copynumber: 2.7 Consensus size: 24
96786815 GTGTGCTTTT
* *
96786825 TAATATTTATATTATTT-TTAATC
1 TAATATTTATATTATTTAATAATA
* *
96786848 TAATATTTA-ATAATTTAATATTA
1 TAATATTTATATTATTTAATAATA
96786871 TAATATTATATATTATT
1 TAATATT-TATATTATT
96786888 ATAGATTTAA
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
22 6 0.19
23 19 0.59
24 2 0.06
25 5 0.16
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.57
Consensus pattern (24 bp):
TAATATTTATATTATTTAATAATA
Found at i:96786866 original size:15 final size:16
Alignment explanation
Indices: 96786843--96786875 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
96786833 ATATTATTTT
96786843 TAATCTAATATT-TAA
1 TAATCTAATATTATAA
*
96786858 TAATTTAATATTATAA
1 TAATCTAATATTATAA
96786874 TA
1 TA
96786876 TTATATATTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 11 0.69
16 5 0.31
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.48
Consensus pattern (16 bp):
TAATCTAATATTATAA
Found at i:96787075 original size:34 final size:34
Alignment explanation
Indices: 96787032--96787099 Score: 127
Period size: 34 Copynumber: 2.0 Consensus size: 34
96787022 ATAATCTTTC
96787032 TTACTTTTGAGATAACTAAAGCTTGCTATCCATT
1 TTACTTTTGAGATAACTAAAGCTTGCTATCCATT
*
96787066 TTACTTTTGAGATAAGTAAAGCTTGCTATCCATT
1 TTACTTTTGAGATAACTAAAGCTTGCTATCCATT
96787100 AGGAGAATAC
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.29, C:0.16, G:0.13, T:0.41
Consensus pattern (34 bp):
TTACTTTTGAGATAACTAAAGCTTGCTATCCATT
Found at i:96791276 original size:16 final size:16
Alignment explanation
Indices: 96791234--96791279 Score: 51
Period size: 16 Copynumber: 2.9 Consensus size: 16
96791224 TTATAAAGTG
96791234 AAATATTTTT--TAAA
1 AAATATTTTTAATAAA
*
96791248 AAACATTAATTTAATAAA
1 AAATATT--TTTAATAAA
96791266 AAATATTTTTAATA
1 AAATATTTTTAATA
96791280 CAATAATTAT
Statistics
Matches: 26, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
14 6 0.23
16 10 0.38
18 10 0.38
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.43
Consensus pattern (16 bp):
AAATATTTTTAATAAA
Found at i:96791541 original size:21 final size:21
Alignment explanation
Indices: 96791515--96791561 Score: 94
Period size: 21 Copynumber: 2.2 Consensus size: 21
96791505 ATCAGCGATG
96791515 TATATATACATAAACTATAAA
1 TATATATACATAAACTATAAA
96791536 TATATATACATAAACTATAAA
1 TATATATACATAAACTATAAA
96791557 TATAT
1 TATAT
96791562 TATATAGTAG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.55, C:0.09, G:0.00, T:0.36
Consensus pattern (21 bp):
TATATATACATAAACTATAAA
Found at i:96792222 original size:19 final size:18
Alignment explanation
Indices: 96792195--96792230 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
96792185 TATATGAACT
*
96792195 ATTAATATATGATATAGC
1 ATTAATATATAATATAGC
96792213 ATTAATTATATAATATAG
1 ATTAA-TATATAATATAG
96792231 TAGGAGGGCT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 5 0.31
19 11 0.69
ACGTcount: A:0.47, C:0.03, G:0.08, T:0.42
Consensus pattern (18 bp):
ATTAATATATAATATAGC
Found at i:96792633 original size:5 final size:5
Alignment explanation
Indices: 96792623--96792659 Score: 58
Period size: 5 Copynumber: 7.6 Consensus size: 5
96792613 ATTATTAATT
*
96792623 TATGA TATGA TAGGA TATGA TAT-A TATGA TATGA TAT
1 TATGA TATGA TATGA TATGA TATGA TATGA TATGA TAT
96792660 AACATTATAG
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
4 4 0.14
5 25 0.86
ACGTcount: A:0.41, C:0.00, G:0.19, T:0.41
Consensus pattern (5 bp):
TATGA
Found at i:96792845 original size:18 final size:17
Alignment explanation
Indices: 96792813--96792846 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
96792803 ATCATTGATG
96792813 AATATATATAAACTATC
1 AATATATATAAACTATC
*
96792830 AATATATTATATACTAT
1 AATATA-TATAAACTAT
96792847 ATGATATGAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.50, C:0.09, G:0.00, T:0.41
Consensus pattern (17 bp):
AATATATATAAACTATC
Found at i:96792853 original size:5 final size:5
Alignment explanation
Indices: 96792845--96792878 Score: 68
Period size: 5 Copynumber: 6.8 Consensus size: 5
96792835 ATTATATACT
96792845 ATATG ATATG ATATG ATATG ATATG ATATG ATAT
1 ATATG ATATG ATATG ATATG ATATG ATATG ATAT
96792879 AGCATTATAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 29 1.00
ACGTcount: A:0.41, C:0.00, G:0.18, T:0.41
Consensus pattern (5 bp):
ATATG
Found at i:96793112 original size:27 final size:27
Alignment explanation
Indices: 96793025--96793112 Score: 63
Period size: 32 Copynumber: 3.0 Consensus size: 27
96793015 TAGTATGCGA
*
96793025 TATAGTATTAT-ATAATGAAATAATATATTT
1 TATAG-ATTATAATAA--AAAT-ATATATAT
96793055 TATA-ATTATTAATATAATAACTATTATTATAT
1 TATAGATTA-TAATA-AA-AA-TA-TA-TATAT
96793087 TATAGATTATAATAAAAATATATATA
1 TATAGATTATAATAAAAATATATATA
96793113 GCATCAATAG
Statistics
Matches: 49, Mismatches: 1, Indels: 19
0.71 0.01 0.28
Matches are distributed among these distances:
27 4 0.08
28 6 0.12
29 4 0.08
30 12 0.24
31 6 0.12
32 13 0.27
33 4 0.08
ACGTcount: A:0.50, C:0.01, G:0.03, T:0.45
Consensus pattern (27 bp):
TATAGATTATAATAAAAATATATATAT
Found at i:96795305 original size:13 final size:13
Alignment explanation
Indices: 96795289--96795322 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
96795279 TAAATTATAA
*
96795289 ATTATTATTAACT
1 ATTATTATTAAAT
96795302 ATTATTATTAAAT
1 ATTATTATTAAAT
*
96795315 AATATTAT
1 ATTATTAT
96795323 ATATATATGT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.44, C:0.03, G:0.00, T:0.53
Consensus pattern (13 bp):
ATTATTATTAAAT
Found at i:96795374 original size:17 final size:17
Alignment explanation
Indices: 96795352--96795386 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
96795342 AAATGAAGAA
*
96795352 AAAGAATAAAAAGAAAC
1 AAAGAAGAAAAAGAAAC
*
96795369 AAAGAAGAATAAGAAAC
1 AAAGAAGAAAAAGAAAC
96795386 A
1 A
96795387 GAGAGCATTC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.74, C:0.06, G:0.14, T:0.06
Consensus pattern (17 bp):
AAAGAAGAAAAAGAAAC
Found at i:96797012 original size:39 final size:39
Alignment explanation
Indices: 96796905--96797039 Score: 121
Period size: 39 Copynumber: 3.4 Consensus size: 39
96796895 GACCTCGAGT
* * * *
96796905 CGATGAGACACTGGGTGTCACTATATTTCTTCGGATAGATT
1 CGATGAGACACTGGGTGTCAAT-TATTACTTCGGCTAG-TC
** ** * *
96796946 CGATGAGGTACTGGGTACCAACT-TTACTTCGGCTAGGC
1 CGATGAGACACTGGGTGTCAATTATTACTTCGGCTAGTC
*
96796984 CGATGAGACACTGGGTGTCAATTATTACTTCGAACTA-TC
1 CGATGAGACACTGGGTGTCAATTATTACTTCG-GCTAGTC
*
96797023 CGATGAGGCACTGGGTG
1 CGATGAGACACTGGGTG
96797040 CCATATTGGT
Statistics
Matches: 74, Mismatches: 18, Indels: 6
0.76 0.18 0.06
Matches are distributed among these distances:
38 18 0.24
39 36 0.49
40 4 0.05
41 16 0.22
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.29
Consensus pattern (39 bp):
CGATGAGACACTGGGTGTCAATTATTACTTCGGCTAGTC
Found at i:96803101 original size:13 final size:13
Alignment explanation
Indices: 96803085--96803118 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
96803075 TAAATTATAA
*
96803085 ATTATTATTAACT
1 ATTATTATTAAAT
96803098 ATTATTATTAAAT
1 ATTATTATTAAAT
*
96803111 AATATTAT
1 ATTATTAT
96803119 ATATATATGT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.44, C:0.03, G:0.00, T:0.53
Consensus pattern (13 bp):
ATTATTATTAAAT
Found at i:96803170 original size:17 final size:17
Alignment explanation
Indices: 96803148--96803182 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
96803138 AAATGAAGAA
*
96803148 AAAGAATAAAAAGAAAC
1 AAAGAAGAAAAAGAAAC
*
96803165 AAAGAAGAATAAGAAAC
1 AAAGAAGAAAAAGAAAC
96803182 A
1 A
96803183 GAGAGCATTC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.74, C:0.06, G:0.14, T:0.06
Consensus pattern (17 bp):
AAAGAAGAAAAAGAAAC
Found at i:96804808 original size:39 final size:39
Alignment explanation
Indices: 96804701--96804835 Score: 121
Period size: 39 Copynumber: 3.4 Consensus size: 39
96804691 GACCTCGAGT
* * * *
96804701 CGATGAGACACTGGGTGTCACTATATTTCTTCGGATAGATT
1 CGATGAGACACTGGGTGTCAAT-TATTACTTCGGCTAG-TC
** ** * *
96804742 CGATGAGGTACTGGGTACCAACT-TTACTTCGGCTAGGC
1 CGATGAGACACTGGGTGTCAATTATTACTTCGGCTAGTC
*
96804780 CGATGAGACACTGGGTGTCAATTATTACTTCGAACTA-TC
1 CGATGAGACACTGGGTGTCAATTATTACTTCG-GCTAGTC
*
96804819 CGATGAGGCACTGGGTG
1 CGATGAGACACTGGGTG
96804836 CCATATTGGT
Statistics
Matches: 74, Mismatches: 18, Indels: 6
0.76 0.18 0.06
Matches are distributed among these distances:
38 18 0.24
39 36 0.49
40 4 0.05
41 16 0.22
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.29
Consensus pattern (39 bp):
CGATGAGACACTGGGTGTCAATTATTACTTCGGCTAGTC
Found at i:96808660 original size:26 final size:26
Alignment explanation
Indices: 96808631--96808738 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
96808621 TGGTACAAAT
96808631 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
96808657 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
96808683 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
96808709 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
96808735 TGAT
1 TGAT
96808739 GGGCATTTCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:96810248 original size:55 final size:55
Alignment explanation
Indices: 96810171--96810300 Score: 242
Period size: 55 Copynumber: 2.4 Consensus size: 55
96810161 ACCCTAAAAT
*
96810171 AGATAAATTACTGAAATACCTTTAAAAGTGGAAAATTTACAGTTTTACCCCTAGG
1 AGATAAATTACCGAAATACCTTTAAAAGTGGAAAATTTACAGTTTTACCCCTAGG
*
96810226 AGATAAATTACCGAAATACCTTTAAAAGTGGAAAATTTATAGTTTTACCCCTAGG
1 AGATAAATTACCGAAATACCTTTAAAAGTGGAAAATTTACAGTTTTACCCCTAGG
96810281 AGATAAATTACCGAAATACC
1 AGATAAATTACCGAAATACC
96810301 CTAGGGTTAA
Statistics
Matches: 73, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
55 73 1.00
ACGTcount: A:0.42, C:0.15, G:0.14, T:0.29
Consensus pattern (55 bp):
AGATAAATTACCGAAATACCTTTAAAAGTGGAAAATTTACAGTTTTACCCCTAGG
Found at i:96815752 original size:26 final size:26
Alignment explanation
Indices: 96815723--96815830 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
96815713 TGGTACAAAT
96815723 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
96815749 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
96815775 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
96815801 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
96815827 TGAT
1 TGAT
96815831 GGGCATTTCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:96820057 original size:38 final size:38
Alignment explanation
Indices: 96820001--96820073 Score: 110
Period size: 38 Copynumber: 1.9 Consensus size: 38
96819991 AACTAGTCCT
* *
96820001 GCTTAGTGCCTAGTAGGCTTAATGCTAGTGTTATTTAG
1 GCTTAGTGCCTAGCAGGCTTAATGCCAGTGTTATTTAG
* *
96820039 GCTTAGTGCCTAGCAGGCTTAGTGCCGGTGTTATT
1 GCTTAGTGCCTAGCAGGCTTAATGCCAGTGTTATT
96820074 CAGGGTTAAT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
38 31 1.00
ACGTcount: A:0.18, C:0.16, G:0.29, T:0.37
Consensus pattern (38 bp):
GCTTAGTGCCTAGCAGGCTTAATGCCAGTGTTATTTAG
Found at i:96822659 original size:93 final size:93
Alignment explanation
Indices: 96822547--96822717 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
96822537 GCCCATAAGT
* *
96822547 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
96822612 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
96822640 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
96822705 CGAGTTCGGATGC
66 CGAGTTCGGATGC
96822718 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:96822714 original size:46 final size:46
Alignment explanation
Indices: 96822539--96822714 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
96822529 TGTAACCCGC
* * *
96822539 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
96822585 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* *
96822635 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
96822678 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
96822715 TGCTCAACCA
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 64 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:96825125 original size:29 final size:29
Alignment explanation
Indices: 96825086--96825173 Score: 97
Period size: 29 Copynumber: 3.0 Consensus size: 29
96825076 CAAAGATAAC
*
96825086 AAGAAAACCGAATAAAGAAATCCAAGATA
1 AAGAAACCCGAATAAAGAAATCCAAGATA
*
96825115 GAGAAACCCGAATAAAGAAATCC-AGAATA
1 AAGAAACCCGAATAAAGAAATCCAAG-ATA
* * * *
96825144 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGA-AACCCGAATAAAGAAATCCAAGATA
96825174 CGATACTATG
Statistics
Matches: 49, Mismatches: 7, Indels: 5
0.80 0.11 0.08
Matches are distributed among these distances:
28 2 0.04
29 27 0.55
30 18 0.37
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (29 bp):
AAGAAACCCGAATAAAGAAATCCAAGATA
Found at i:96825144 original size:15 final size:15
Alignment explanation
Indices: 96825086--96825164 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
96825076 CAAAGATAAC
*
96825086 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
96825100 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
96825115 GAGAAA-CCCGAATA
1 AAGAAATCCAGAATA
96825129 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
96825144 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
96825159 AAGAAA
1 AAGAAA
96825165 CCCAAGATAC
Statistics
Matches: 53, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
14 19 0.36
15 34 0.64
ACGTcount: A:0.58, C:0.14, G:0.18, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:96825173 original size:15 final size:15
Alignment explanation
Indices: 96825097--96825173 Score: 77
Period size: 15 Copynumber: 5.2 Consensus size: 15
96825087 AGAAAACCGA
96825097 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* * *
96825112 ATAGAGAAACCCGA-
1 ATAAAGAAATCCAAG
96825126 ATAAAGAAATCC-AG
1 ATAAAGAAATCCAAG
* *
96825140 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
96825156 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
96825171 ATA
1 ATA
96825174 CGATACTATG
Statistics
Matches: 49, Mismatches: 10, Indels: 6
0.75 0.15 0.09
Matches are distributed among these distances:
13 1 0.02
14 10 0.20
15 37 0.76
16 1 0.02
ACGTcount: A:0.56, C:0.16, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:96828192 original size:93 final size:93
Alignment explanation
Indices: 96828080--96828250 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
96828070 GCCCATAAGT
* *
96828080 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
96828145 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
96828173 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
96828238 CGAGTTCGGATGC
66 CGAGTTCGGATGC
96828251 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:96828247 original size:46 final size:46
Alignment explanation
Indices: 96828072--96828247 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
96828062 TGTAACCCGC
* * *
96828072 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
96828118 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* *
96828168 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
96828211 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
96828248 TGCTCAACCA
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 64 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:96833647 original size:9 final size:9
Alignment explanation
Indices: 96833635--96833718 Score: 57
Period size: 9 Copynumber: 9.4 Consensus size: 9
96833625 TTAAAACTAA
96833635 AAAAAATAT
1 AAAAAATAT
*
96833644 -AAAAATCTT
1 AAAAAAT-AT
96833653 AAAAAA-AT
1 AAAAAATAT
* *
96833661 ACAAAATTT
1 AAAAAATAT
* *
96833670 TAAAATTAT
1 AAAAAATAT
*
96833679 TAAAAATCAT
1 AAAAAAT-AT
*
96833689 AAAATATAT
1 AAAAAATAT
*
96833698 -AGAAATAT
1 AAAAAATAT
96833706 AAAAAATAT
1 AAAAAATAT
96833715 AAAA
1 AAAA
96833719 TTTTATAAAG
Statistics
Matches: 56, Mismatches: 14, Indels: 10
0.70 0.17 0.12
Matches are distributed among these distances:
8 18 0.32
9 26 0.46
10 12 0.21
ACGTcount: A:0.68, C:0.04, G:0.01, T:0.27
Consensus pattern (9 bp):
AAAAAATAT
Found at i:96833667 original size:18 final size:19
Alignment explanation
Indices: 96833634--96833718 Score: 63
Period size: 18 Copynumber: 4.7 Consensus size: 19
96833624 ATTAAAACTA
96833634 AAAAAAATATAAAAATCTT
1 AAAAAAATATAAAAATCTT
* *
96833653 AAAAAAATA-CAAAATTTT
1 AAAAAAATATAAAAATCTT
** *
96833671 AAAATTAT-TAAAAATCAT
1 AAAAAAATATAAAAATCTT
* * *
96833689 -AAAATATATAGAAAT-AT
1 AAAAAAATATAAAAATCTT
96833706 -AAAAAATATAAAA
1 AAAAAAATATAAAA
96833719 TTTTATAAAG
Statistics
Matches: 53, Mismatches: 11, Indels: 6
0.76 0.16 0.09
Matches are distributed among these distances:
17 19 0.36
18 25 0.47
19 9 0.17
ACGTcount: A:0.68, C:0.04, G:0.01, T:0.27
Consensus pattern (19 bp):
AAAAAAATATAAAAATCTT
Found at i:96833725 original size:19 final size:19
Alignment explanation
Indices: 96833635--96833727 Score: 56
Period size: 17 Copynumber: 5.2 Consensus size: 19
96833625 TTAAAACTAA
*
96833635 AAAAAATATAAAAATCTTA-
1 AAAAAATAT-AAAATTTTAT
*
96833654 AAAAAATACAAAATTTTA-
1 AAAAAATATAAAATTTTAT
** * *
96833672 AAATTAT-TAAAA-ATCAT
1 AAAAAATATAAAATTTTAT
*
96833689 AAAATATATAGAAA---TAT
1 AAAAAATATA-AAATTTTAT
96833706 AAAAAATATAAAATTTTAT
1 AAAAAATATAAAATTTTAT
96833725 AAA
1 AAA
96833728 GCCATAAGAA
Statistics
Matches: 58, Mismatches: 10, Indels: 12
0.73 0.12 0.15
Matches are distributed among these distances:
16 5 0.09
17 21 0.36
18 15 0.26
19 17 0.29
ACGTcount: A:0.66, C:0.03, G:0.01, T:0.30
Consensus pattern (19 bp):
AAAAAATATAAAATTTTAT
Found at i:96834549 original size:2 final size:2
Alignment explanation
Indices: 96834542--96834578 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
96834532 TTTCTCGTAT
96834542 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
96834579 TTATACTTTT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.00, C:0.49, G:0.00, T:0.51
Consensus pattern (2 bp):
TC
Found at i:96839499 original size:169 final size:169
Alignment explanation
Indices: 96839220--96839560 Score: 673
Period size: 169 Copynumber: 2.0 Consensus size: 169
96839210 CAGACAAATA
96839220 TAACTATATAAACACATAGAATTTTTTATTCATCTTAGAATGAGTATATGAAGAGGTTGTTTCAA
1 TAACTATATAAACACATAGAATTTTTTATTCATCTTAGAATGAGTATATGAAGAGGTTGTTTCAA
96839285 TGAATCTCCTCCTTTATAACCTTGATGTTAAGACCAATTCCCTTGAAAAACGGTTTTTAAGAAAA
66 TGAATCTCCTCCTTTATAACCTTGATGTTAAGACCAATTCCCTTGAAAAACGGTTTTTAAGAAAA
96839350 CAATTTCAGTTGGTTCACTTTCATACATAAGTCAGTTTC
131 CAATTTCAGTTGGTTCACTTTCATACATAAGTCAGTTTC
96839389 TAACTATATAAACACATAGAATTTTTTATTCATCTTAGAATGAGTATATGAAGAGGTTGTTTCAA
1 TAACTATATAAACACATAGAATTTTTTATTCATCTTAGAATGAGTATATGAAGAGGTTGTTTCAA
96839454 TGAATCTCCTCCTTTATAACCTTGATGTTAAGACCAATTCCCTTGAAAAACGGTTTTTAAGAAAA
66 TGAATCTCCTCCTTTATAACCTTGATGTTAAGACCAATTCCCTTGAAAAACGGTTTTTAAGAAAA
*
96839519 CAATTTCAGTTGGTTCACTTTCATATATAAGTCAGTTTC
131 CAATTTCAGTTGGTTCACTTTCATACATAAGTCAGTTTC
96839558 TAA
1 TAA
96839561 ATTACATTCT
Statistics
Matches: 171, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
169 171 1.00
ACGTcount: A:0.34, C:0.16, G:0.13, T:0.38
Consensus pattern (169 bp):
TAACTATATAAACACATAGAATTTTTTATTCATCTTAGAATGAGTATATGAAGAGGTTGTTTCAA
TGAATCTCCTCCTTTATAACCTTGATGTTAAGACCAATTCCCTTGAAAAACGGTTTTTAAGAAAA
CAATTTCAGTTGGTTCACTTTCATACATAAGTCAGTTTC
Found at i:96847292 original size:17 final size:18
Alignment explanation
Indices: 96847262--96847308 Score: 51
Period size: 17 Copynumber: 2.6 Consensus size: 18
96847252 CTGTTATTTA
* *
96847262 TTATTATTAATTATAATCT
1 TTATTA-TATTTATAATAT
*
96847281 TTA-TATATTTATCATAT
1 TTATTATATTTATAATAT
96847298 TTATTATATTT
1 TTATTATATTT
96847309 TATATATGTA
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
17 12 0.50
18 9 0.38
19 3 0.12
ACGTcount: A:0.34, C:0.04, G:0.00, T:0.62
Consensus pattern (18 bp):
TTATTATATTTATAATAT
Found at i:96847478 original size:22 final size:23
Alignment explanation
Indices: 96847446--96847505 Score: 61
Period size: 22 Copynumber: 2.7 Consensus size: 23
96847436 ATATTGTATT
*
96847446 ATATATATATATATATAT-TTCTC
1 ATATAT-TATAAATATATGTTCTC
* *
96847469 ATATATTATAAACATGTGTTCTC
1 ATATATTATAAATATATGTTCTC
*
96847492 A-ATATTATACATAT
1 ATATATTATAAATAT
96847506 TATTATGTAT
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
22 19 0.61
23 12 0.39
ACGTcount: A:0.40, C:0.10, G:0.03, T:0.47
Consensus pattern (23 bp):
ATATATTATAAATATATGTTCTC
Found at i:96848093 original size:20 final size:21
Alignment explanation
Indices: 96848065--96848103 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
96848055 ATTTTTATAT
96848065 ATATCATGTA-TATATTTCGA
1 ATATCATGTAGTATATTTCGA
*
96848085 ATATTATGTAGTATATTTC
1 ATATCATGTAGTATATTTC
96848104 TGACACTATC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 9 0.53
21 8 0.47
ACGTcount: A:0.33, C:0.08, G:0.10, T:0.49
Consensus pattern (21 bp):
ATATCATGTAGTATATTTCGA
Found at i:96860388 original size:75 final size:74
Alignment explanation
Indices: 96860272--96860418 Score: 258
Period size: 75 Copynumber: 2.0 Consensus size: 74
96860262 TATATTTTTC
96860272 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTAAATTCC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTAAATTCC
96860337 TGCTTTTCAA
66 TG-TTTTCAA
* * *
96860347 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCGCGCTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTAAATTCC
96860412 TGTTTTC
66 TGTTTTC
96860419 TCAATTTATA
Statistics
Matches: 69, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
74 5 0.07
75 64 0.93
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.31
Consensus pattern (74 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTAAATTCC
TGTTTTCAA
Found at i:96860458 original size:163 final size:163
Alignment explanation
Indices: 96860181--96860573 Score: 705
Period size: 163 Copynumber: 2.4 Consensus size: 163
96860171 ATTTTTAAAA
*
96860181 AAAAAATATCAACTCATATTGCGAGAGGTAAGTTGAGCCTCAGGGCGCGCTGAGGTATTTTCAAT
1 AAAAAA-ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCGCGCTGAGGTATTTTCAAT
*
96860246 TTCTGTTTTTTCAATTTATATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA
65 TTCTGTTTTCTCAATTTATATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA
*
96860311 GGGCACGCTGAGGTATTTTAAATTCCTGCTTTTC
130 GGGCACGCTGAGGGATTTTAAATTCCTGCTTTTC
96860345 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCGCGCTGAGGTATTTTCAATT
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCGCGCTGAGGTATTTTCAATT
96860410 TCTGTTTTCTCAATTTATATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG
66 TCTGTTTTCTCAATTTATATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG
* *
96860475 GGCACGCTGAGGGATTTTCAATTTCTGCTTTTC
131 GGCACGCTGAGGGATTTTAAATTCCTGCTTTTC
* * *
96860508 AAAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATT
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCGCGCTGAGGTATTTTCAATT
96860573 T
66 T
96860574 ATATTTTTCA
Statistics
Matches: 221, Mismatches: 8, Indels: 1
0.96 0.03 0.00
Matches are distributed among these distances:
163 215 0.97
164 6 0.03
ACGTcount: A:0.28, C:0.17, G:0.22, T:0.33
Consensus pattern (163 bp):
AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCGCGCTGAGGTATTTTCAATT
TCTGTTTTCTCAATTTATATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG
GGCACGCTGAGGGATTTTAAATTCCTGCTTTTC
Found at i:96860537 original size:75 final size:73
Alignment explanation
Indices: 96860419--96860620 Score: 314
Period size: 75 Copynumber: 2.7 Consensus size: 73
96860409 TTCTGTTTTC
* *
96860419 TCAATTTATATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTG
1 TCAATTTATACTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTG
96860484 AGGGATTT
66 AGGGATTT
* * *
96860492 TCAATTTCTGCTTTTCAAAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGC
1 TCAATTTATACTTTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGC
*
96860557 TGAGGTATTT
64 TGAGGGATTT
* *
96860567 TCAATTTATATTTTTCAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTC
1 TCAATTTATACTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
96860621 GGGTCACATG
Statistics
Matches: 116, Mismatches: 11, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
73 49 0.42
75 67 0.58
ACGTcount: A:0.30, C:0.17, G:0.20, T:0.33
Consensus pattern (73 bp):
TCAATTTATACTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTG
AGGGATTT
Found at i:96860638 original size:75 final size:73
Alignment explanation
Indices: 96860419--96860645 Score: 298
Period size: 75 Copynumber: 3.1 Consensus size: 73
96860409 TTCTGTTTTC
96860419 TCAATTTATATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCAC-GCT
1 TCAATTTATATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGGCACAGCT
*
96860483 GAGGGATTT
65 GAGGTATTT
* ** * *
96860492 TCAATTTCTGCTTTTCAAAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-ACACG
1 TCAATTTATATTTTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGCACA-G
96860556 CTGAGGTATTT
63 CTGAGGTATTT
*
96860567 TCAATTTATATTTTTCAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCGGGTCACATG-
1 TCAATTTATATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGG-CACA-GC
*
96860631 TCAAGGTATTT
64 T-GAGGTATTT
96860642 TCAA
1 TCAA
96860646 AATCTGCTTT
Statistics
Matches: 133, Mismatches: 14, Indels: 12
0.84 0.09 0.08
Matches are distributed among these distances:
73 53 0.40
74 3 0.02
75 77 0.58
ACGTcount: A:0.30, C:0.17, G:0.21, T:0.33
Consensus pattern (73 bp):
TCAATTTATATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGCACAGCTG
AGGTATTT
Found at i:96861908 original size:17 final size:17
Alignment explanation
Indices: 96861886--96861920 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
96861876 TGATTTTTTC
**
96861886 TATTTTCATTTCTATTT
1 TATTTTCAAATCTATTT
96861903 TATTTTCAAATCTATTT
1 TATTTTCAAATCTATTT
96861920 T
1 T
96861921 TTCTATACCC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.23, C:0.11, G:0.00, T:0.66
Consensus pattern (17 bp):
TATTTTCAAATCTATTT
Found at i:96862623 original size:17 final size:18
Alignment explanation
Indices: 96862593--96862639 Score: 51
Period size: 17 Copynumber: 2.6 Consensus size: 18
96862583 CTGTTATTTA
* *
96862593 TTATTATTAATTATAATCT
1 TTATTA-TATTTATAATAT
*
96862612 TTA-TATATTTATCATAT
1 TTATTATATTTATAATAT
96862629 TTATTATATTT
1 TTATTATATTT
96862640 TATATATGTA
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
17 12 0.50
18 9 0.38
19 3 0.12
ACGTcount: A:0.34, C:0.04, G:0.00, T:0.62
Consensus pattern (18 bp):
TTATTATATTTATAATAT
Found at i:96862812 original size:22 final size:23
Alignment explanation
Indices: 96862780--96862839 Score: 61
Period size: 22 Copynumber: 2.7 Consensus size: 23
96862770 ATTGTATTAT
*
96862780 ATATATATATATATATAT-TTCTC
1 ATATAT-TATAAATATATGTTCTC
* *
96862803 ATATATTATAAACATGTGTTCTC
1 ATATATTATAAATATATGTTCTC
*
96862826 A-ATATTATACATAT
1 ATATATTATAAATAT
96862840 TATTATGTAT
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
22 19 0.61
23 12 0.39
ACGTcount: A:0.40, C:0.10, G:0.03, T:0.47
Consensus pattern (23 bp):
ATATATTATAAATATATGTTCTC
Found at i:96865055 original size:2 final size:2
Alignment explanation
Indices: 96865048--96865091 Score: 88
Period size: 2 Copynumber: 22.0 Consensus size: 2
96865038 GCATTACTTC
96865048 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
96865090 AT
1 AT
96865092 TTTGGAAGAG
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:96867075 original size:19 final size:20
Alignment explanation
Indices: 96867051--96867103 Score: 58
Period size: 19 Copynumber: 2.8 Consensus size: 20
96867041 ACATGTCATT
96867051 ATTTAATTAATTTTTTTA-A
1 ATTTAATTAATTTTTTTATA
**
96867070 ATTTAAAAAATATTTTTTATA
1 ATTTAATTAAT-TTTTTTATA
96867091 ATTT--TTAATTTTT
1 ATTTAATTAATTTTT
96867104 AAAATAATTT
Statistics
Matches: 28, Mismatches: 4, Indels: 5
0.76 0.11 0.14
Matches are distributed among these distances:
18 4 0.14
19 12 0.43
20 7 0.25
21 5 0.18
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (20 bp):
ATTTAATTAATTTTTTTATA
Found at i:96867095 original size:9 final size:9
Alignment explanation
Indices: 96867083--96867142 Score: 61
Period size: 9 Copynumber: 6.4 Consensus size: 9
96867073 TAAAAAATAT
96867083 TTTTTATAA
1 TTTTTATAA
96867092 -TTTT-TAA
1 TTTTTATAA
96867099 TTTTTAAAATAA
1 TTTTT---ATAA
96867111 TTTTTATAA
1 TTTTTATAA
*
96867120 TTTTTTTGAA
1 TTTTTAT-AA
96867130 TTTTTATAA
1 TTTTTATAA
96867139 TTTT
1 TTTT
96867143 AAAAAATTAA
Statistics
Matches: 43, Mismatches: 2, Indels: 12
0.75 0.04 0.21
Matches are distributed among these distances:
7 3 0.07
8 8 0.19
9 16 0.37
10 8 0.19
12 8 0.19
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.67
Consensus pattern (9 bp):
TTTTTATAA
Found at i:96867135 original size:31 final size:30
Alignment explanation
Indices: 96867058--96867135 Score: 97
Period size: 28 Copynumber: 2.6 Consensus size: 30
96867048 ATTATTTAAT
** *
96867058 TAATTTTTTTAAATTTAAAAAATATTTTTTA
1 TAATTTTTTT-AATTTTTAAAATAATTTTTA
96867089 TAA--TTTTTAATTTTTAAAATAATTTTTA
1 TAATTTTTTTAATTTTTAAAATAATTTTTA
96867117 TAATTTTTTTGAATTTTTA
1 TAATTTTTTT-AATTTTTA
96867136 TAATTTTAAA
Statistics
Matches: 41, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
28 20 0.49
29 5 0.12
30 5 0.12
31 11 0.27
ACGTcount: A:0.37, C:0.00, G:0.01, T:0.62
Consensus pattern (30 bp):
TAATTTTTTTAATTTTTAAAATAATTTTTA
Found at i:96867150 original size:19 final size:19
Alignment explanation
Indices: 96867090--96867150 Score: 61
Period size: 19 Copynumber: 3.2 Consensus size: 19
96867080 TATTTTTTAT
*
96867090 AATTTTTA-ATTTTTAAAA
1 AATTTTTATAATTTTAAAA
****
96867108 TAATTTTTATAATTTTTTTG
1 -AATTTTTATAATTTTAAAA
96867128 AATTTTTATAATTTTAAAA
1 AATTTTTATAATTTTAAAA
96867147 AATT
1 AATT
96867151 AATTAAATTT
Statistics
Matches: 32, Mismatches: 9, Indels: 2
0.74 0.21 0.05
Matches are distributed among these distances:
19 27 0.84
20 5 0.16
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (19 bp):
AATTTTTATAATTTTAAAA
Found at i:96868971 original size:23 final size:24
Alignment explanation
Indices: 96868927--96868973 Score: 62
Period size: 23 Copynumber: 2.0 Consensus size: 24
96868917 TAATTACGAC
*
96868927 AAAAATTATATCTATTTAATATTT
1 AAAAATTATATATATTTAATATTT
96868951 AAAAATTA-ATAT-TTTATATATTT
1 AAAAATTATATATATTTA-ATATTT
96868974 TTATAATTAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 4 0.19
23 9 0.43
24 8 0.38
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (24 bp):
AAAAATTATATATATTTAATATTT
Found at i:96872582 original size:50 final size:50
Alignment explanation
Indices: 96872507--96872607 Score: 166
Period size: 50 Copynumber: 2.0 Consensus size: 50
96872497 ACAGGACAAT
96872507 ACTCAAACCGTAAAAGGGATGGGGATACATGTAGTTTACACAAAATAAAA
1 ACTCAAACCGTAAAAGGGATGGGGATACATGTAGTTTACACAAAATAAAA
* * * *
96872557 ACTCAGACCGTAAAATGGATGGGGATACATGTGGTTTATACAAAATAAAA
1 ACTCAAACCGTAAAAGGGATGGGGATACATGTAGTTTACACAAAATAAAA
96872607 A
1 A
96872608 GAAGCAAATC
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
50 47 1.00
ACGTcount: A:0.45, C:0.13, G:0.21, T:0.22
Consensus pattern (50 bp):
ACTCAAACCGTAAAAGGGATGGGGATACATGTAGTTTACACAAAATAAAA
Found at i:96879642 original size:36 final size:36
Alignment explanation
Indices: 96879600--96879676 Score: 145
Period size: 36 Copynumber: 2.1 Consensus size: 36
96879590 TTGTCTTTAT
*
96879600 TTAAAAAATGGGTAAATTAGTTTTTGGACGTTTAAA
1 TTAAAAAATGGGTAAATTAGTTCTTGGACGTTTAAA
96879636 TTAAAAAATGGGTAAATTAGTTCTTGGACGTTTAAA
1 TTAAAAAATGGGTAAATTAGTTCTTGGACGTTTAAA
96879672 TTAAA
1 TTAAA
96879677 TGTTAAAAGT
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
36 40 1.00
ACGTcount: A:0.40, C:0.04, G:0.18, T:0.38
Consensus pattern (36 bp):
TTAAAAAATGGGTAAATTAGTTCTTGGACGTTTAAA
Found at i:96884936 original size:18 final size:18
Alignment explanation
Indices: 96884915--96884953 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
96884905 TACTTTAGCC
*
96884915 TTTTT-TTTTTAATTTTAA
1 TTTTTGTTTTT-ACTTTAA
96884933 TTTTTGTTTTTACTTTAA
1 TTTTTGTTTTTACTTTAA
96884951 TTT
1 TTT
96884954 ACTAACTTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 14 0.74
19 5 0.26
ACGTcount: A:0.18, C:0.03, G:0.03, T:0.77
Consensus pattern (18 bp):
TTTTTGTTTTTACTTTAA
Found at i:96891594 original size:14 final size:15
Alignment explanation
Indices: 96891566--96891599 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
96891556 TATTATTATT
*
96891566 TATTTCTTATTTTAC
1 TATTTCTTATATTAC
96891581 TATTTCTT-TATTAC
1 TATTTCTTATATTAC
96891595 TATTT
1 TATTT
96891600 TCTTCTGCTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 10 0.56
15 8 0.44
ACGTcount: A:0.21, C:0.12, G:0.00, T:0.68
Consensus pattern (15 bp):
TATTTCTTATATTAC
Found at i:96891619 original size:21 final size:22
Alignment explanation
Indices: 96891564--96891619 Score: 53
Period size: 21 Copynumber: 2.5 Consensus size: 22
96891554 CTTATTATTA
*
96891564 TTTATTTCTTATTTTACTATTTC
1 TTTATTT-TTATTTTACTATTGC
**
96891587 TTTATTACTATTTT-CT-TCTGC
1 TTTATTTTTATTTTACTAT-TGC
96891608 TTTATTTTTATT
1 TTTATTTTTATT
96891620 GCTGATTTAT
Statistics
Matches: 27, Mismatches: 5, Indels: 4
0.75 0.14 0.11
Matches are distributed among these distances:
20 1 0.04
21 14 0.52
22 6 0.22
23 6 0.22
ACGTcount: A:0.16, C:0.12, G:0.02, T:0.70
Consensus pattern (22 bp):
TTTATTTTTATTTTACTATTGC
Found at i:96894876 original size:26 final size:26
Alignment explanation
Indices: 96894845--96894952 Score: 171
Period size: 26 Copynumber: 4.2 Consensus size: 26
96894835 TGAAATGCCC
*
96894845 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
96894871 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* * * *
96894897 ATCATAGAATATTTACCTAATCTATT
1 ATCATGGAACATTTACCTAACCCATT
96894923 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
96894949 ATCA
1 ATCA
96894953 ATTTGTACCA
Statistics
Matches: 73, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 73 1.00
ACGTcount: A:0.37, C:0.23, G:0.06, T:0.33
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:96900464 original size:39 final size:39
Alignment explanation
Indices: 96900418--96900557 Score: 217
Period size: 39 Copynumber: 3.6 Consensus size: 39
96900408 GGACTAAGAT
* *
96900418 CCGAAGGCGTTCGTGCGAGTTAATAAATCTGGGTTAAGC
1 CCGAAGGCATTCGTGCGAGTTAATAAATCCGGGTTAAGC
*
96900457 CCGAAGGCATTTGTGCGAGTTAATAAATCCGGGTTAAGC
1 CCGAAGGCATTCGTGCGAGTTAATAAATCCGGGTTAAGC
* * *
96900496 CCGAAGGCATTTGTGCGAGTTACTAAACCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTAATAAATCCGGGTTAAG-C
96900536 CCGAAGGCATTCGTGCGAGTTA
1 CCGAAGGCATTCGTGCGAGTTA
96900558 CTATAACCGG
Statistics
Matches: 94, Mismatches: 6, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
39 72 0.77
40 22 0.23
ACGTcount: A:0.26, C:0.20, G:0.29, T:0.25
Consensus pattern (39 bp):
CCGAAGGCATTCGTGCGAGTTAATAAATCCGGGTTAAGC
Found at i:96900552 original size:40 final size:39
Alignment explanation
Indices: 96900418--96900586 Score: 214
Period size: 39 Copynumber: 4.3 Consensus size: 39
96900408 GGACTAAGAT
* * *
96900418 CCGAAGGCGTTCGTGCGAGTTAATAAATCTGGGTTAAGC
1 CCGAAGGCATTCGTGCGAGTTAATAAACCCGGGTTAAGC
* *
96900457 CCGAAGGCATTTGTGCGAGTTAATAAATCCGGGTTAAGC
1 CCGAAGGCATTCGTGCGAGTTAATAAACCCGGGTTAAGC
* *
96900496 CCGAAGGCATTTGTGCGAGTTACTAAACCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTAATAAACCCGGGTTAAG-C
* * *
96900536 CCGAAGGCATTCGTGCGAGTTACTATAACCGGGGTT-TGTC
1 CCGAAGGCATTCGTGCGAGTTAATA-AACCCGGGTTAAG-C
96900576 CCGAAGGCATT
1 CCGAAGGCATT
96900587 TGAGCTAGTC
Statistics
Matches: 120, Mismatches: 8, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
39 72 0.60
40 39 0.32
41 9 0.08
ACGTcount: A:0.25, C:0.21, G:0.29, T:0.25
Consensus pattern (39 bp):
CCGAAGGCATTCGTGCGAGTTAATAAACCCGGGTTAAGC
Found at i:96900611 original size:79 final size:78
Alignment explanation
Indices: 96900448--96900596 Score: 194
Period size: 79 Copynumber: 1.9 Consensus size: 78
96900438 TAATAAATCT
* *
96900448 GGGTTAAGCCCGAAGGCATTTGTGCGAGTTAATAAATCCGGGTTAAGCCCGAAGGCATTTGTGCG
1 GGGTTAAGCCCGAAGGCATTCGTGCGAGTTAATAAATCCGGGTTAAGCCCGAAGGCATTTGAGCG
*
96900513 AGTTACTAAACCC
66 AGTCACTAAACCC
* *
96900526 GGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAA-CCGGGGTT-TGTCCCGAAGGCATTTG
1 GGGTTAAG-CCCGAAGGCATTCGTGCGAGTTAATA-AATCC-GGGTTAAG-CCCGAAGGCATTTG
*
96900589 AGCTAGTC
62 AGCGAGTC
96900597 GTTATATCCG
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
78 8 0.13
79 27 0.44
80 26 0.43
ACGTcount: A:0.24, C:0.21, G:0.30, T:0.26
Consensus pattern (78 bp):
GGGTTAAGCCCGAAGGCATTCGTGCGAGTTAATAAATCCGGGTTAAGCCCGAAGGCATTTGAGCG
AGTCACTAAACCC
Found at i:96905210 original size:26 final size:26
Alignment explanation
Indices: 96905180--96905293 Score: 192
Period size: 26 Copynumber: 4.4 Consensus size: 26
96905170 AAAAGACATG
*
96905180 CCCATTATCATGGAATATTTACCTAA
1 CCCATTATCATGGAACATTTACCTAA
*
96905206 TCCATTATCATGGAACATTTACCTAA
1 CCCATTATCATGGAACATTTACCTAA
*
96905232 CCCATTATCATGGAATATTTACCTAA
1 CCCATTATCATGGAACATTTACCTAA
*
96905258 TCCATTATCATGGAACATTTACCTAA
1 CCCATTATCATGGAACATTTACCTAA
96905284 CCCATTATCA
1 CCCATTATCA
96905294 ATTTGTACCA
Statistics
Matches: 81, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 81 1.00
ACGTcount: A:0.34, C:0.25, G:0.07, T:0.34
Consensus pattern (26 bp):
CCCATTATCATGGAACATTTACCTAA
Found at i:96905241 original size:52 final size:52
Alignment explanation
Indices: 96905180--96905293 Score: 228
Period size: 52 Copynumber: 2.2 Consensus size: 52
96905170 AAAAGACATG
96905180 CCCATTATCATGGAATATTTACCTAATCCATTATCATGGAACATTTACCTAA
1 CCCATTATCATGGAATATTTACCTAATCCATTATCATGGAACATTTACCTAA
96905232 CCCATTATCATGGAATATTTACCTAATCCATTATCATGGAACATTTACCTAA
1 CCCATTATCATGGAATATTTACCTAATCCATTATCATGGAACATTTACCTAA
96905284 CCCATTATCA
1 CCCATTATCA
96905294 ATTTGTACCA
Statistics
Matches: 62, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
52 62 1.00
ACGTcount: A:0.34, C:0.25, G:0.07, T:0.34
Consensus pattern (52 bp):
CCCATTATCATGGAATATTTACCTAATCCATTATCATGGAACATTTACCTAA
Found at i:96911408 original size:40 final size:40
Alignment explanation
Indices: 96911338--96911542 Score: 317
Period size: 40 Copynumber: 5.2 Consensus size: 40
96911328 CGGATGATAA
* *
96911338 CGAAGGCATTTGTGCTAGTGACTA-ATTCCGGGCTAAGTCC
1 CGAAGGCATTTGTGCGAGTTACTATA-TCCGGGCTAAGTCC
96911378 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
1 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
96911418 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
1 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
*
96911458 CGAAGGCATTTGTGCGAGCTACTATATCCGGGCTAAGTCC
1 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
* * *
96911498 CGAAGGCATTTGAGCGAG-TAGCTATATCC-GGTTAAATCC
1 CGAAGGCATTTGTGCGAGTTA-CTATATCCGGGCTAAGTCC
96911537 CGAAGG
1 CGAAGG
96911543 TACTTCGTTT
Statistics
Matches: 157, Mismatches: 6, Indels: 5
0.93 0.04 0.03
Matches are distributed among these distances:
39 16 0.10
40 140 0.89
41 1 0.01
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
Found at i:96913841 original size:13 final size:13
Alignment explanation
Indices: 96913825--96913851 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
96913815 CCCTATTTGG
96913825 GATTGAGATTTTA
1 GATTGAGATTTTA
96913838 GATTGAGATTTTA
1 GATTGAGATTTTA
96913851 G
1 G
96913852 CCTACTCAAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.00, G:0.26, T:0.44
Consensus pattern (13 bp):
GATTGAGATTTTA
Found at i:96916446 original size:41 final size:40
Alignment explanation
Indices: 96916398--96916489 Score: 123
Period size: 40 Copynumber: 2.3 Consensus size: 40
96916388 GCTTTATCAA
** *
96916398 AAACGCCGCTATAGGTTTGAGTATTAGCGGCATTTTT-TAG
1 AAACGCCGCTATAGGTCGGACTA-TAGCGGCATTTTTATAG
*
96916438 AAAGCGCCGCTATAGGTCGGCCTATAGCGGCATTTTTATAG
1 AAA-CGCCGCTATAGGTCGGACTATAGCGGCATTTTTATAG
96916479 AAACGCCGCTA
1 AAACGCCGCTA
96916490 AAAAATTAAA
Statistics
Matches: 46, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
40 24 0.52
41 22 0.48
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (40 bp):
AAACGCCGCTATAGGTCGGACTATAGCGGCATTTTTATAG
Found at i:96916554 original size:153 final size:152
Alignment explanation
Indices: 96916260--96916592 Score: 434
Period size: 153 Copynumber: 2.2 Consensus size: 152
96916250 AATTGAATAA
* * * * * *
96916260 ATTGAGAATTAGCGGCGTTTTTAAGGAAGTGTCGCTATAGGTCGACATATAGCGGCGTTTTTATA
1 ATTGAGTATTAGCGGCGTTTTTTAGAAAGCGCCGCTATAGGTCGACATATAGCGGCATTTTTATA
* ** * *
96916325 AAAACGCCACTAAAAGATTAGGCGAACGGCGTGTTTATTGTGAGCTTCAGTGGCAATAGCGGCGC
66 AAAACGCCACTAAAAAATTAAACGAACGGCATGTTTATTGTGAGCTTCACTGGCAATAGCGGCGC
* * *
96916390 TTTATCAAAAACGCCGCTATAGG
131 TTGAGCAAAAACGCCACTATA-G
* * * *
96916413 TTTGAGTATTAGCGGCATTTTTTAGAAAGCGCCGCTATAGGTCGGCCTATAGCGGCATTTTTATA
1 ATTGAGTATTAGCGGCGTTTTTTAGAAAGCGCCGCTATAGGTCGACATATAGCGGCATTTTTATA
* * *
96916478 GAAACGCCGCTAAAAAATTAAACGAACGGCATCGTTTATTTTGAGCTTCACTGGCAATAGCGGCG
66 AAAACGCCACTAAAAAATTAAACGAACGGCAT-GTTTATTGTGAGCTTCACTGGCAATAGCGGCG
*
96916543 CTTGCGC-AAAACGCCACTATAG
130 CTTGAGCAAAAACGCCACTATAG
*
96916565 ATTGAGTATTAGCGGCGCTTTTTAGAAA
1 ATTGAGTATTAGCGGCGTTTTTTAGAAA
96916593 ACGTCGCAAT
Statistics
Matches: 154, Mismatches: 25, Indels: 3
0.85 0.14 0.02
Matches are distributed among these distances:
152 26 0.17
153 94 0.61
154 34 0.22
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.28
Consensus pattern (152 bp):
ATTGAGTATTAGCGGCGTTTTTTAGAAAGCGCCGCTATAGGTCGACATATAGCGGCATTTTTATA
AAAACGCCACTAAAAAATTAAACGAACGGCATGTTTATTGTGAGCTTCACTGGCAATAGCGGCGC
TTGAGCAAAAACGCCACTATAG
Found at i:96916649 original size:42 final size:41
Alignment explanation
Indices: 96916550--96916683 Score: 182
Period size: 42 Copynumber: 3.2 Consensus size: 41
96916540 GCGCTTGCGC
* * *
96916550 AAAACGCCACTATAGAT-TGAGTATTAGCGGCGCTTTTTAG-
1 AAAACGCCGCAATAGATATGAGT-TTAGCGGCGCTTTTTGGA
* *
96916590 AAAACGTCGCAATAGATATGAGTTTCAGCGACGCTTTTTGGA
1 AAAACGCCGCAATAGATATGAGTTT-AGCGGCGCTTTTTGGA
96916632 AAAACGCCGCAATAGATATGAGTTTTAGCGGCGCTTTTTGGA
1 AAAACGCCGCAATAGATATGAG-TTTAGCGGCGCTTTTTGGA
96916674 AAAACGCCGC
1 AAAACGCCGC
96916684 TAAAGATCTA
Statistics
Matches: 83, Mismatches: 7, Indels: 6
0.86 0.07 0.06
Matches are distributed among these distances:
40 16 0.19
41 18 0.22
42 46 0.55
43 3 0.04
ACGTcount: A:0.31, C:0.19, G:0.24, T:0.27
Consensus pattern (41 bp):
AAAACGCCGCAATAGATATGAGTTTAGCGGCGCTTTTTGGA
Found at i:96917395 original size:23 final size:21
Alignment explanation
Indices: 96917369--96917415 Score: 58
Period size: 23 Copynumber: 2.1 Consensus size: 21
96917359 AGGTTTATGC
*
96917369 ATGGTTTAGGGTATATATGGTTT
1 ATGGTTTAGGGT-T-TATGGATT
*
96917392 ATGGTTTATGGTTTATGGATT
1 ATGGTTTAGGGTTTATGGATT
96917413 ATG
1 ATG
96917416 ACAAGTTAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 10 0.45
22 1 0.05
23 11 0.50
ACGTcount: A:0.21, C:0.00, G:0.30, T:0.49
Consensus pattern (21 bp):
ATGGTTTAGGGTTTATGGATT
Found at i:96917396 original size:7 final size:7
Alignment explanation
Indices: 96917369--96917415 Score: 58
Period size: 7 Copynumber: 6.4 Consensus size: 7
96917359 AGGTTTATGC
96917369 ATGGTTT
1 ATGGTTT
*
96917376 AGGGTATAT
1 ATGGT-T-T
96917385 ATGGTTT
1 ATGGTTT
96917392 ATGGTTT
1 ATGGTTT
96917399 ATGGTTT
1 ATGGTTT
*
96917406 ATGGATT
1 ATGGTTT
96917413 ATG
1 ATG
96917416 ACAAGTTAAT
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
7 28 0.80
8 2 0.06
9 5 0.14
ACGTcount: A:0.21, C:0.00, G:0.30, T:0.49
Consensus pattern (7 bp):
ATGGTTT
Found at i:96917591 original size:22 final size:22
Alignment explanation
Indices: 96917538--96917591 Score: 56
Period size: 22 Copynumber: 2.5 Consensus size: 22
96917528 TATTAATTGT
* * *
96917538 GGATTTAGGGATTATGGTTTAT
1 GGATTTAGGGATGAAGGTTTAG
*
96917560 GG-TTTAAGGGCTGAAGGTTTAG
1 GGATTT-AGGGATGAAGGTTTAG
96917582 GGATTTAGGG
1 GGATTTAGGG
96917592 GTTAATATTT
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
21 3 0.12
22 20 0.77
23 3 0.12
ACGTcount: A:0.22, C:0.02, G:0.39, T:0.37
Consensus pattern (22 bp):
GGATTTAGGGATGAAGGTTTAG
Found at i:96917794 original size:73 final size:72
Alignment explanation
Indices: 96917629--96917796 Score: 185
Period size: 73 Copynumber: 2.3 Consensus size: 72
96917619 GGGTCAAAGG
* * * * *
96917629 TTAGGAGTTAAGGGGTTGAGGGGATATAGTTTAGGGTTTAGTGTTCAAAGTCTATGGATTAAGGG
1 TTAGG-GTTTAGGGGTTAAGGGGACATAGTTTAAGGTTTAGTGTTCAAAGTCTAGGGATTAAGGG
*
96917694 TTTAGGGT
65 TTAAGGGT
* * * * *
96917702 TTATGGG-TTCGGGAGTTAAGGGGACATTGTTTAAGGTTTAGTGTTTAAATTTTAGGGATTAAGG
1 TTA-GGGTTTAGGG-GTTAAGGGGACATAGTTTAAGGTTTAGTGTTCAAAGTCTAGGGATTAAGG
*
96917766 GTTAATGGT
64 GTTAAGGGT
96917775 TTAGGGTTTAGGGGTTTAAGGG
1 TTAGGGTTTAGGGG-TTAAGGG
96917797 TTAATGGGAT
Statistics
Matches: 78, Mismatches: 13, Indels: 8
0.79 0.13 0.08
Matches are distributed among these distances:
72 8 0.10
73 68 0.87
74 2 0.03
ACGTcount: A:0.24, C:0.02, G:0.36, T:0.38
Consensus pattern (72 bp):
TTAGGGTTTAGGGGTTAAGGGGACATAGTTTAAGGTTTAGTGTTCAAAGTCTAGGGATTAAGGGT
TAAGGGT
Found at i:96917962 original size:16 final size:16
Alignment explanation
Indices: 96917937--96917989 Score: 61
Period size: 16 Copynumber: 3.1 Consensus size: 16
96917927 ACATATATTA
96917937 AATAATTTCAAATTTT
1 AATAATTTCAAATTTT
* *
96917953 AATGATTTCAAATTGTC
1 AATAATTTCAAATT-TT
96917970 AATAATTTTCAAGATTTT
1 AATAA-TTTCAA-ATTTT
96917988 AA
1 AA
96917990 ATTTTATGTA
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
16 13 0.43
17 5 0.17
18 9 0.30
19 3 0.10
ACGTcount: A:0.42, C:0.08, G:0.06, T:0.45
Consensus pattern (16 bp):
AATAATTTCAAATTTT
Found at i:96918139 original size:17 final size:17
Alignment explanation
Indices: 96918102--96918136 Score: 56
Period size: 15 Copynumber: 2.2 Consensus size: 17
96918092 CTATATAACT
96918102 TATTGTTTTTTAATTTA
1 TATTGTTTTTTAATTTA
96918119 TATTG-TTTTT-ATTTA
1 TATTGTTTTTTAATTTA
96918134 TAT
1 TAT
96918137 ATTAAATAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 8 0.44
16 5 0.28
17 5 0.28
ACGTcount: A:0.23, C:0.00, G:0.06, T:0.71
Consensus pattern (17 bp):
TATTGTTTTTTAATTTA
Done.