Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr02 99090824
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 99090824
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 317 characters in sequence are not A, C, G, or T
File 312 of 318
Found at i:96918210 original size:38 final size:39
Alignment explanation
Indices: 96918159--96918233 Score: 107
Period size: 38 Copynumber: 1.9 Consensus size: 39
96918149 AAATTTTTAA
* *
96918159 ATGCATTAGCGGCGTTTTT-CATAAACGCCGCAAAAGGT
1 ATGCAATAGCGGCGTTTTTGCAAAAACGCCGCAAAAGGT
* *
96918197 ATGCAATAGCGGCGTTTTTGGAAAAACGCCGGAAAAG
1 ATGCAATAGCGGCGTTTTTGCAAAAACGCCGCAAAAG
96918234 ATCAGCATGT
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
38 18 0.56
39 14 0.44
ACGTcount: A:0.32, C:0.19, G:0.27, T:0.23
Consensus pattern (39 bp):
ATGCAATAGCGGCGTTTTTGCAAAAACGCCGCAAAAGGT
Found at i:96920144 original size:15 final size:16
Alignment explanation
Indices: 96920118--96920147 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
96920108 GTAGTTATGA
96920118 ATGAGTTTTTCAGTGC
1 ATGAGTTTTTCAGTGC
96920134 ATGAG-TTTTCAGTG
1 ATGAGTTTTTCAGTG
96920148 TATAACCTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.20, C:0.10, G:0.27, T:0.43
Consensus pattern (16 bp):
ATGAGTTTTTCAGTGC
Found at i:96922725 original size:15 final size:15
Alignment explanation
Indices: 96922681--96922735 Score: 62
Period size: 15 Copynumber: 3.7 Consensus size: 15
96922671 AACGACATGT
*
96922681 ATATTACTTAATTAAA
1 ATATTATTTAATT-AA
96922697 ATAATT-TTT-A-TAA
1 AT-ATTATTTAATTAA
96922710 ATATTATTTAATTAA
1 ATATTATTTAATTAA
96922725 ATATTATTTAA
1 ATATTATTTAA
96922736 CCCCACCACT
Statistics
Matches: 34, Mismatches: 1, Indels: 9
0.77 0.02 0.20
Matches are distributed among these distances:
12 3 0.09
13 7 0.21
14 2 0.06
15 15 0.44
16 4 0.12
17 3 0.09
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (15 bp):
ATATTATTTAATTAA
Found at i:96922881 original size:9 final size:9
Alignment explanation
Indices: 96922841--96923030 Score: 89
Period size: 9 Copynumber: 20.6 Consensus size: 9
96922831 TATTTGATAT
*
96922841 CATAATTTA
1 CATAACTTA
*
96922850 TATAACTTA
1 CATAACTTA
* *
96922859 CAAAACGTA
1 CATAACTTA
96922868 CATAACTTA
1 CATAACTTA
*
96922877 TATAACTTA
1 CATAACTTA
* *
96922886 GATAA-ATA
1 CATAACTTA
*
96922894 TATAACTTA
1 CATAACTTA
96922903 CATAACTTA
1 CATAACTTA
96922912 CATAATACTTA
1 CAT-A-ACTTA
* *
96922923 AATATATTTTATA
1 CATA-A--CT-TA
*
96922936 TCATAATTTA
1 -CATAACTTA
*
96922946 CATGACTTA
1 CATAACTTA
*
96922955 CGTAACTTA
1 CATAACTTA
*
96922964 TATAACTTA
1 CATAACTTA
* *
96922973 GATAA-ATA
1 CATAACTTA
* *
96922981 TATAATTTA
1 CATAACTTA
*
96922990 CATAA-ATA
1 CATAACTTA
* * *
96922998 TATATCATA
1 CATAACTTA
96923007 TCATAACTTA
1 -CATAACTTA
96923017 CATAACTTA
1 CATAACTTA
96923026 CATAA
1 CATAA
96923031 TACTTAAATA
Statistics
Matches: 138, Mismatches: 33, Indels: 20
0.72 0.17 0.10
Matches are distributed among these distances:
8 17 0.12
9 93 0.67
10 12 0.09
11 9 0.07
12 1 0.01
13 3 0.02
14 3 0.02
ACGTcount: A:0.46, C:0.13, G:0.03, T:0.38
Consensus pattern (9 bp):
CATAACTTA
Found at i:96922897 original size:17 final size:17
Alignment explanation
Indices: 96922875--96923030 Score: 75
Period size: 17 Copynumber: 8.9 Consensus size: 17
96922865 GTACATAACT
*
96922875 TATATAACTTAGATAAA
1 TATATAACTTACATAAA
*
96922892 TATATAACTTACATAACT
1 TATATAACTTACATAA-A
* *
96922910 TACATAA--TACTTAAA
1 TATATAACTTACATAAA
** *
96922925 TATAT-TTTATATCATAATT
1 TATATAACT-TA-CATAA-A
* * * *
96922944 TACATGACTTACGTAACT
1 TATATAACTTACATAA-A
*
96922962 TATATAACTTAGATAAA
1 TATATAACTTACATAAA
*
96922979 TATATAATTTACATAAA
1 TATATAACTTACATAAA
* * *
96922996 TATATATCATATCATAACT
1 TATATAACTTA-CATAA-A
*
96923015 TACATAACTTACATAA
1 TATATAACTTACATAA
96923031 TACTTAAATA
Statistics
Matches: 102, Mismatches: 28, Indels: 17
0.69 0.19 0.12
Matches are distributed among these distances:
15 4 0.04
16 6 0.06
17 40 0.39
18 37 0.36
19 14 0.14
20 1 0.01
ACGTcount: A:0.46, C:0.12, G:0.03, T:0.39
Consensus pattern (17 bp):
TATATAACTTACATAAA
Found at i:96922899 original size:44 final size:44
Alignment explanation
Indices: 96922848--96922994 Score: 151
Period size: 44 Copynumber: 3.4 Consensus size: 44
96922838 TATCATAATT
* *
96922848 TATATAACTTACAAAACGTACATAACTTATATAACTTAGATAAA
1 TATATAACTTACATAACTTACATAACTTATATAACTTAGATAAA
* *
96922892 TATATAACTTACATAACTTACATAATACTTAAATATA-TT---T-TA
1 TATATAACTTACATAACTTACAT-A-ACTTATATA-ACTTAGATAAA
* * *
96922934 TATCATAATTTACATGACTTACGTAACTTATATAACTTAGATAAA
1 TAT-ATAACTTACATAACTTACATAACTTATATAACTTAGATAAA
*
96922979 TATATAATTTACATAA
1 TATATAACTTACATAA
96922995 ATATATATCA
Statistics
Matches: 84, Mismatches: 10, Indels: 18
0.75 0.09 0.16
Matches are distributed among these distances:
40 1 0.01
41 10 0.12
42 5 0.06
43 18 0.21
44 34 0.40
45 5 0.06
46 10 0.12
47 1 0.01
ACGTcount: A:0.46, C:0.12, G:0.03, T:0.38
Consensus pattern (44 bp):
TATATAACTTACATAACTTACATAACTTATATAACTTAGATAAA
Found at i:96923012 original size:96 final size:96
Alignment explanation
Indices: 96922814--96923021 Score: 213
Period size: 96 Copynumber: 2.1 Consensus size: 96
96922804 ATAAAAAACT
* *
96922814 TACATAATACATAAATATATTTGATATCATAATTTATATAACTTACAAAACGTACATAACTTATA
1 TACATAATACATAAATATATTTGATATCATAATTTACATAACTTACAAAACGTACATAACTTAGA
* * * *
96922879 TAACTTAGATAAATATATAACTTACATAACT
66 TAACATAGATAAATACATAACATACATAACA
* * * ** * *
96922910 TACATAATACTTAAATATATTTTATATCATAATTTACATGACTTACGTAACTTATATAACTTAGA
1 TACATAATACATAAATATATTTGATATCATAATTTACATAACTTACAAAACGTACATAACTTAGA
* * * *
96922975 TAA-ATATATAATTTACATAA-ATATATATCA
66 TAACATAGATAA-ATACATAACATACATAACA
96923005 TATCATAACTTACATAA
1 TA-CATAA--TACATAA
96923022 CTTACATAAT
Statistics
Matches: 90, Mismatches: 18, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
95 14 0.16
96 70 0.78
98 6 0.07
ACGTcount: A:0.47, C:0.12, G:0.03, T:0.38
Consensus pattern (96 bp):
TACATAATACATAAATATATTTGATATCATAATTTACATAACTTACAAAACGTACATAACTTAGA
TAACATAGATAAATACATAACATACATAACA
Found at i:96928692 original size:21 final size:21
Alignment explanation
Indices: 96928667--96928707 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
96928657 TTAGAGCGGA
96928667 GGCAGCAGCGAGGGAGGCAGC
1 GGCAGCAGCGAGGGAGGCAGC
96928688 GGCAGCAGCGAGGGAGGCAG
1 GGCAGCAGCGAGGGAGGCAG
96928708 AGCATAGGAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.24, C:0.22, G:0.54, T:0.00
Consensus pattern (21 bp):
GGCAGCAGCGAGGGAGGCAGC
Found at i:96929123 original size:43 final size:43
Alignment explanation
Indices: 96929062--96929205 Score: 261
Period size: 43 Copynumber: 3.3 Consensus size: 43
96929052 TCTGCCAAAA
*
96929062 TTAGCGGCGCTTTTTCTTCAAACGCCGCTAAAGGCCATGACTT
1 TTAGCGGCGCTTTTTCTTCAAACGCCGCTAAAGGCCACGACTT
*
96929105 TTAGCGGTGCTTTTTCTTCAAACGCCGCTAAAGGCCACGACTT
1 TTAGCGGCGCTTTTTCTTCAAACGCCGCTAAAGGCCACGACTT
*
96929148 TTAGCGGCGTTTTTTCTTCAAACGCCGCTAAAGGCCACGACTT
1 TTAGCGGCGCTTTTTCTTCAAACGCCGCTAAAGGCCACGACTT
96929191 TTAGCGGCGCTTTTT
1 TTAGCGGCGCTTTTT
96929206 TTAATTAACG
Statistics
Matches: 96, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 96 1.00
ACGTcount: A:0.19, C:0.27, G:0.22, T:0.32
Consensus pattern (43 bp):
TTAGCGGCGCTTTTTCTTCAAACGCCGCTAAAGGCCACGACTT
Found at i:96939441 original size:10 final size:9
Alignment explanation
Indices: 96939428--96939494 Score: 64
Period size: 10 Copynumber: 7.0 Consensus size: 9
96939418 TTGTTTTAAC
96939428 ATATTTATTA
1 ATATTT-TTA
*
96939438 ATATTTTAA
1 ATATTTTTA
96939447 TATATTTTTA
1 -ATATTTTTA
96939457 ATAATTTTTA
1 AT-ATTTTTA
*
96939467 TTTATTTTTA
1 -ATATTTTTA
96939477 ATAATTTTTA
1 AT-ATTTTTA
96939487 AT-TTTTTA
1 ATATTTTTA
96939495 GAATTATTGT
Statistics
Matches: 49, Mismatches: 4, Indels: 10
0.78 0.06 0.16
Matches are distributed among these distances:
8 6 0.12
9 5 0.10
10 37 0.76
11 1 0.02
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (9 bp):
ATATTTTTA
Found at i:96939446 original size:20 final size:20
Alignment explanation
Indices: 96939421--96939484 Score: 76
Period size: 20 Copynumber: 3.2 Consensus size: 20
96939411 TTTGATTTTG
96939421 TTTTAACATATTTATTAAT-A
1 TTTTAACATATTT-TTAATAA
*
96939441 TTTTAATATATTTTTAATAA
1 TTTTAACATATTTTTAATAA
* **
96939461 TTTTTATTTATTTTTAATAA
1 TTTTAACATATTTTTAATAA
96939481 TTTT
1 TTTT
96939485 TAATTTTTTA
Statistics
Matches: 40, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
19 5 0.12
20 35 0.88
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.64
Consensus pattern (20 bp):
TTTTAACATATTTTTAATAA
Found at i:96939485 original size:20 final size:20
Alignment explanation
Indices: 96939428--96939494 Score: 86
Period size: 20 Copynumber: 3.5 Consensus size: 20
96939418 TTGTTTTAAC
*
96939428 ATATTTATTAAT-ATTTTAAT
1 ATATTT-TTAATAATTTTTAT
96939448 ATATTTTTAATAATTTTTAT
1 ATATTTTTAATAATTTTTAT
*
96939468 TTATTTTTAATAATTTTTA-
1 ATATTTTTAATAATTTTTAT
96939487 AT-TTTTTA
1 ATATTTTTA
96939495 GAATTATTGT
Statistics
Matches: 43, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
18 6 0.14
19 6 0.14
20 31 0.72
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (20 bp):
ATATTTTTAATAATTTTTAT
Found at i:96943199 original size:3 final size:3
Alignment explanation
Indices: 96943191--96943221 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
96943181 ACCAAGAACC
96943191 TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA T
1 TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA T
96943222 TTGATTCCTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.32, C:0.00, G:0.32, T:0.35
Consensus pattern (3 bp):
TGA
Found at i:96943937 original size:10 final size:9
Alignment explanation
Indices: 96943924--96943956 Score: 50
Period size: 10 Copynumber: 3.7 Consensus size: 9
96943914 GACATGTGAC
96943924 AAAAATAAT
1 AAAAATAAT
96943933 AAAAA-AAT
1 AAAAATAAT
96943941 AAAAATCAAT
1 AAAAAT-AAT
96943951 AAAAAT
1 AAAAAT
96943957 TATTAAATTT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
8 8 0.36
9 5 0.23
10 9 0.41
ACGTcount: A:0.79, C:0.03, G:0.00, T:0.18
Consensus pattern (9 bp):
AAAAATAAT
Found at i:96943979 original size:18 final size:18
Alignment explanation
Indices: 96943924--96943993 Score: 61
Period size: 18 Copynumber: 3.8 Consensus size: 18
96943914 GACATGTGAC
*
96943924 AAAAA-TAATAAAAAAAT
1 AAAAATTAATAAAAAATT
*
96943941 AAAAATCAATAAAAATTATT
1 AAAAATTAATAAAAA--ATT
**
96943961 AAATTTTAATAAAAAATT
1 AAAAATTAATAAAAAATT
* *
96943979 AAAAGTTATTAAAAA
1 AAAAATTAATAAAAA
96943994 TAGAAAAAGA
Statistics
Matches: 42, Mismatches: 8, Indels: 5
0.76 0.15 0.09
Matches are distributed among these distances:
17 5 0.12
18 23 0.55
20 14 0.33
ACGTcount: A:0.69, C:0.01, G:0.01, T:0.29
Consensus pattern (18 bp):
AAAAATTAATAAAAAATT
Found at i:96944033 original size:20 final size:20
Alignment explanation
Indices: 96943979--96944050 Score: 69
Period size: 20 Copynumber: 3.6 Consensus size: 20
96943969 ATAAAAAATT
* * * *
96943979 AAAAGTTATTAAAAATAGAA
1 AAAAATTATAAAAAATTGTA
96943999 AAAGAATTAT-AAAAATTGTA
1 AAA-AATTATAAAAAATTGTA
96944019 AAAAATTATAAAAAA-TGTA
1 AAAAATTATAAAAAATTGTA
96944038 AAGAAA-TATAAAA
1 AA-AAATTATAAAA
96944051 TTCGTAAAAA
Statistics
Matches: 46, Mismatches: 3, Indels: 7
0.82 0.05 0.12
Matches are distributed among these distances:
19 19 0.41
20 22 0.48
21 5 0.11
ACGTcount: A:0.67, C:0.00, G:0.08, T:0.25
Consensus pattern (20 bp):
AAAAATTATAAAAAATTGTA
Found at i:96944057 original size:19 final size:19
Alignment explanation
Indices: 96943999--96944074 Score: 75
Period size: 19 Copynumber: 3.9 Consensus size: 19
96943989 AAAAATAGAA
*
96943999 AAAGAATTATAAAAATTGT
1 AAAGAAATATAAAAATTGT
*
96944018 AAA-AAATTATAAAAAATGT
1 AAAGAAA-TATAAAAATTGT
96944037 AAAGAAATAT-AAAATTCGT
1 AAAGAAATATAAAAATT-GT
*
96944056 AAAAAAAACTATAAAAATT
1 -AAAGAAA-TATAAAAATT
96944075 ATCTTATCCC
Statistics
Matches: 47, Mismatches: 4, Indels: 9
0.78 0.07 0.15
Matches are distributed among these distances:
18 7 0.15
19 22 0.47
20 9 0.19
21 3 0.06
22 6 0.13
ACGTcount: A:0.64, C:0.03, G:0.07, T:0.26
Consensus pattern (19 bp):
AAAGAAATATAAAAATTGT
Found at i:96944930 original size:21 final size:20
Alignment explanation
Indices: 96944904--96944995 Score: 64
Period size: 21 Copynumber: 4.5 Consensus size: 20
96944894 ATAAAAAATA
96944904 TATTTTTTATAAATTCTTTAC
1 TATTTTTTATAAATT-TTTAC
*
96944925 TATTTTTTATATAA--TTT-G
1 TATTTTTTATA-AATTTTTAC
** * *
96944943 TGGTTTTTATAATTTCTTTTC
1 TATTTTTTATAAATT-TTTAC
* *
96944964 TATTTTTAATAAATTTTTAA
1 TATTTTTTATAAATTTTTAC
96944984 TATTTTTCTATA
1 TATTTTT-TATA
96944996 CATTGATATT
Statistics
Matches: 53, Mismatches: 12, Indels: 12
0.69 0.16 0.16
Matches are distributed among these distances:
17 1 0.02
18 9 0.17
19 3 0.06
20 13 0.25
21 25 0.47
22 2 0.04
ACGTcount: A:0.27, C:0.05, G:0.03, T:0.64
Consensus pattern (20 bp):
TATTTTTTATAAATTTTTAC
Found at i:96944933 original size:39 final size:39
Alignment explanation
Indices: 96944889--96944976 Score: 95
Period size: 39 Copynumber: 2.3 Consensus size: 39
96944879 TTTTTAAAAA
*
96944889 TTTTTATAAAAAATATATTTTTTATAAATTCTTTACTAT
1 TTTTTATAAAAAATATAGTTTTTATAAATTCTTTACTAT
* ** * * * *
96944928 TTTTTATATAATTTGTGGTTTTTATAATTTCTTTTCTAT
1 TTTTTATAAAAAATATAGTTTTTATAAATTCTTTACTAT
*
96944967 TTTTAATAAA
1 TTTTTATAAA
96944977 TTTTTAATAT
Statistics
Matches: 39, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.32, C:0.05, G:0.03, T:0.60
Consensus pattern (39 bp):
TTTTTATAAAAAATATAGTTTTTATAAATTCTTTACTAT
Found at i:96946220 original size:3 final size:3
Alignment explanation
Indices: 96946212--96946247 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
96946202 CATAGTTGAA
96946212 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
96946248 TCTGTAAAAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:96949169 original size:11 final size:11
Alignment explanation
Indices: 96949138--96949170 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
96949128 AACATTAGTA
96949138 ATATATATTTT
1 ATATATATTTT
*
96949149 -TATATGTTTT
1 ATATATATTTT
96949159 ATATATATTTT
1 ATATATATTTT
96949170 A
1 A
96949171 ATCAAAAGAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
10 9 0.47
11 10 0.53
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.64
Consensus pattern (11 bp):
ATATATATTTT
Found at i:96963264 original size:337 final size:334
Alignment explanation
Indices: 96962643--96963287 Score: 1004
Period size: 337 Copynumber: 1.9 Consensus size: 334
96962633 ACTCTAAAGT
*
96962643 AGAGTTGATGGATAATTAACTTGTGACATATATATTAATATTAAATTGAAAAAGAAAAATGTTAT
1 AGAGTTGATGGATAATTAACTTGTGACATATATATTAATATTAAATTGAAAAAGAAAAAAGTTAT
* * *
96962708 AGATCATTTGGTGAGTAAGAAGGTATGGCAGGTGAGCATCGAGGTTTTAGGGGATGCATTACAAT
66 AGATCATTTGGTGACTAAAAAGGGATGGCAGGTGAGCATCGAGGTTTTAGGGGATGCATTACAAT
*
96962773 AATGAAATTTATGTTGCTAAAGAAAACACCTAAATAAGTTAGTCTTGAAATTTATTTTAACAAAT
131 AATGAAATTTATGTTGCTAAAGAAAACACCTAAATAAGCTAGTCTTGAAATTTATTTTAACAAAT
* * * * * *
96962838 CAAAGTGGCGCAATGGAAGTGTGGTGGGCCCATAACCCATAGGTTCCAAGATCGAAACTTGGATT
196 CAAAGTGGCGCAACGGAAGCGTGATGGGCCCATAACCCATAGGTCCCAAGATCAAAACTTGGATC
* *
96962903 TGATAATTTTGAAAAAGATTTTCTTGATTTTTTAAATTCTTATCAAAACGTAGGCTAGCTTGATT
261 TGATAATTTTGAAAAAGATTTTCTTAACTTTTTAAATTCTTATCAAAACGTAGGCTAGCTTGATT
96962968 TTTGAAATC
326 TTTGAAATC
* * * *
96962977 AGAGTTGATGGATAATTAACTTGTGGCGTATATATTAATATTAATTTGAAAACGAAAAAAAGTTA
1 AGAGTTGATGGATAATTAACTTGTGACATATATATTAATATTAAATTGAAAAAG-AAAAAAGTTA
*
96963042 TAGATCATTTGGTGACTAAAAAGGGATGGCAGGTGAGCATTGAGGTTTTAGGGGATGCATTACAA
65 TAGATCATTTGGTGACTAAAAAGGGATGGCAGGTGAGCATCGAGGTTTTAGGGGATGCATTACAA
* * *
96963107 TAGTGAACTTTATGTTGCTAAA-AAGTGAACACCTAAATAAGCTAGTCTTGAAATTTATTTTGAC
130 TAATGAAATTTATGTTGCTAAAGAA---AACACCTAAATAAGCTAGTCTTGAAATTTATTTTAAC
* *
96963171 AAATCAGAGTGGCGCAGCGGAAGCGTGATGGGCCCATAACCCATAGGTCCCAAGATCAAAACTTG
192 AAATCAAAGTGGCGCAACGGAAGCGTGATGGGCCCATAACCCATAGGTCCCAAGATCAAAACTTG
* * * *
96963236 GCTCTGATAATTTTGAGAAAGTTTTTCTTAACTTTTTAAATTCTTCTCAAAA
257 GATCTGATAATTTTGAAAAAGATTTTCTTAACTTTTTAAATTCTTATCAAAA
96963288 TGTGGGCTGA
Statistics
Matches: 280, Mismatches: 27, Indels: 5
0.90 0.09 0.02
Matches are distributed among these distances:
334 52 0.19
335 90 0.32
337 138 0.49
ACGTcount: A:0.36, C:0.11, G:0.21, T:0.32
Consensus pattern (334 bp):
AGAGTTGATGGATAATTAACTTGTGACATATATATTAATATTAAATTGAAAAAGAAAAAAGTTAT
AGATCATTTGGTGACTAAAAAGGGATGGCAGGTGAGCATCGAGGTTTTAGGGGATGCATTACAAT
AATGAAATTTATGTTGCTAAAGAAAACACCTAAATAAGCTAGTCTTGAAATTTATTTTAACAAAT
CAAAGTGGCGCAACGGAAGCGTGATGGGCCCATAACCCATAGGTCCCAAGATCAAAACTTGGATC
TGATAATTTTGAAAAAGATTTTCTTAACTTTTTAAATTCTTATCAAAACGTAGGCTAGCTTGATT
TTTGAAATC
Found at i:96963430 original size:10 final size:9
Alignment explanation
Indices: 96963403--96963457 Score: 56
Period size: 9 Copynumber: 5.9 Consensus size: 9
96963393 TATTAACATA
*
96963403 TAAAAATAT
1 TAAAATTAT
*
96963412 AAAAATTAT
1 TAAAATTAT
96963421 TAAGAATTAT
1 TAA-AATTAT
*
96963431 AAGAAATTAT
1 TA-AAATTAT
*
96963441 TAAATTTAT
1 TAAAATTAT
96963450 TAAAATTA
1 TAAAATTA
96963458 AAAAAATTAA
Statistics
Matches: 37, Mismatches: 7, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
9 22 0.59
10 14 0.38
11 1 0.03
ACGTcount: A:0.58, C:0.00, G:0.04, T:0.38
Consensus pattern (9 bp):
TAAAATTAT
Found at i:96964317 original size:140 final size:137
Alignment explanation
Indices: 96964075--96964940 Score: 914
Period size: 131 Copynumber: 6.4 Consensus size: 137
96964065 TTATGGGGTA
* * *
96964075 ACACTTTTCTAAGTGTTGCGATAGACTGGCCAACATACGTTTTCGGCAACTTTTTGTATAAGGGT
1 ACACTTTCCTAAGTGTTGCGATAGACT-G--AACATACGCTTTCGGCAACTCTTTGTATAAGGGT
* * * * *
96964140 TGCGATATGCATGCCTAAAGCAACGCTTAAATAAGAGTTGGCTTTGTCTAGTCCCAAGACGACA-
63 TGCGATATGTATGCCTAAGGCAACGCTTGAATAAGAGTTGGCTTTGTGTAGTCCTAAGACGACAC
* *
96964204 TTTATGAGGCA
128 TTT-TGGGGCG
*
96964215 ACACTTTTCTAAGTGTTGCGATAGACTGGCCAACATACGCTTTCGGCAACTCTTTGTATAAGGGT
1 ACACTTTCCTAAGTGTTGCGATAGACT-G--AACATACGCTTTCGGCAACTCTTTGTATAAGGGT
* * * * *
96964280 TGGGATAAGCATGCCTAAAGCAACGCTTAAATAAGAGTTGG-TGTTGTGTAGTCCTAAGACGACA
63 TGCGATATGTATGCCTAAGGCAACGCTTGAATAAGAGTTGGCT-TTGTGTAGTCCTAAGACGACA
*
96964344 CTTTTGGGGCA
127 CTTTTGGGGCG
* * *
96964355 ACACTTTCCTAAGTGTTG-GA-ATA-T--AC-TACGCTTTCGCCAACTATTTGTATAAGGGTTGC
1 ACACTTTCCTAAGTGTTGCGATAGACTGAACATACGCTTTCGGCAACTCTTTGTATAAGGGTTGC
* *
96964414 GATATGTATGCCTACGGCAACGCTTGAATAAGAGTTGGCTTTTGTGTAGTCATAAGAC-ACACTT
66 GATATGTATGCCTAAGGCAACGCTTGAATAAGAGTTGGC-TTTGTGTAGTCCTAAGACGACACTT
*
96964478 TTGTGGCG
130 TTGGGGCG
*
96964486 ACACTTTCCTAAGTGTTG-G---GA-TAAAC-TACGCTTT-GGCAACTCTTTGTATAAGGGTTGC
1 ACACTTTCCTAAGTGTTGCGATAGACTGAACATACGCTTTCGGCAACTCTTTGTATAAGGGTTGC
* * * *
96964544 GATATGTATGCCTACGGCAACGCTTGCATAGGAGTTAGAG-TTTGTGTAGTCCTAGGACGACACT
66 GATATGTATGCCTAAGGCAACGCTTGAATAAGAGTT-G-GCTTTGTGTAGTCCTAAGACGACACT
*
96964608 TTTGTGGCG
129 TTTGGGGCG
* * *
96964617 ACACTTTCCTAAGTGTTGC-ATAGACT----AT--GCTTTCGTCAACTCTTTATATAAGGGTTGG
1 ACACTTTCCTAAGTGTTGCGATAGACTGAACATACGCTTTCGGCAACTCTTTGTATAAGGGTTGC
* ** * *
96964675 GATTTGTATGCCTAAGGCAATACTTGAATAAGAGTTGGTTTTTGTGTAGTCCTAAGATGACACTT
66 GATATGTATGCCTAAGGCAACGCTTGAATAAGAGTTGG-CTTTGTGTAGTCCTAAGACGACACTT
*
96964740 TTGTGGCG
130 TTGGGGCG
* *
96964748 ACACTTTCCTAAGTGTTGCGATAAACTG----T--GCTTTCGGCAACTCTTTGTATAAGGGTTGT
1 ACACTTTCCTAAGTGTTGCGATAGACTGAACATACGCTTTCGGCAACTCTTTGTATAAGGGTTGC
* ** * * *
96964807 GATATGTATGCCTACGGCAACGCTTGAGCAAGAGTTGGCTTTTGTCTAGTCCTAAGACTACAGTT
66 GATATGTATGCCTAAGGCAACGCTTGAATAAGAGTTGGC-TTTGTGTAGTCCTAAGACGACACTT
96964872 TTGGGGCG
130 TTGGGGCG
**
96964880 ACACTTTCCTAAGTGTT-CAGATAGACTTGTCAACATATACTTT-GGCCAACTCTTTGTATAA
1 ACACTTTCCTAAGTGTTGC-GATAGAC-TG--AACATACGCTTTCGG-CAACTCTTTGTATAA
96964941 AGGTGTAACA
Statistics
Matches: 638, Mismatches: 56, Indels: 63
0.84 0.07 0.08
Matches are distributed among these distances:
129 3 0.00
130 78 0.12
131 239 0.37
132 137 0.21
133 3 0.00
134 2 0.00
135 1 0.00
137 1 0.00
138 2 0.00
139 4 0.01
140 146 0.23
141 22 0.03
ACGTcount: A:0.25, C:0.18, G:0.23, T:0.33
Consensus pattern (137 bp):
ACACTTTCCTAAGTGTTGCGATAGACTGAACATACGCTTTCGGCAACTCTTTGTATAAGGGTTGC
GATATGTATGCCTAAGGCAACGCTTGAATAAGAGTTGGCTTTGTGTAGTCCTAAGACGACACTTT
TGGGGCG
Found at i:96964703 original size:261 final size:260
Alignment explanation
Indices: 96964110--96964896 Score: 963
Period size: 261 Copynumber: 3.0 Consensus size: 260
96964100 CTGGCCAACA
* * * * * *
96964110 TACGTTTTCGGCAACTTTTTGTATAAGGGTTGCGATATGCATGCCTAAAGCAACGCTTAAATAAG
1 TACGCTTTCGCCAACTATTTGTATAAGGGTTGCGATATGTATGCCTAAGGCAACGCTTGAATAAG
* * * * *
96964175 AGTTGGC-TTTGTCTAGTCCCAAGACGACA-TTTATGAGGCAACACTTTTCTAAGTGTTGCGATA
66 AGTTGGCTTTTGTGTAGTCCTAAGAC-ACACTTT-TGTGGCGACACTTTCCTAAGTGTTG-G---
* * * * **
96964238 GACTGGCCAACATACGCTTTCGGCAACTCTTTGTATAAGGGTTGGGATAAGCATGCCTAAAGCAA
125 GA-T---AAAC-TACGCTTTCGGCAACTCTTTGTATAAGGGTTGCGATATGTATGCCTACGGCAA
** *
96964303 CGCTTAAATAAGAGTTGGTGTTGTGTAGTCCTAAGACGACACTTTTGGGGCAACACTTTCCTAAG
185 CGCTTGCAT-AGAGTTGGT-TTGTGTAGTCCTAAGACGACACTTTTGGGGCGACACTTTCCTAAG
*
96964368 TGTTGGAATATAC
248 TGTTGGAATAGAC
*
96964381 TACGCTTTCGCCAACTATTTGTATAAGGGTTGCGATATGTATGCCTACGGCAACGCTTGAATAAG
1 TACGCTTTCGCCAACTATTTGTATAAGGGTTGCGATATGTATGCCTAAGGCAACGCTTGAATAAG
*
96964446 AGTTGGCTTTTGTGTAGTCATAAGACACACTTTTGTGGCGACACTTTCCTAAGTGTTGGGATAAA
66 AGTTGGCTTTTGTGTAGTCCTAAGACACACTTTTGTGGCGACACTTTCCTAAGTGTTGGGATAAA
96964511 CTACGCTTT-GGCAACTCTTTGTATAAGGGTTGCGATATGTATGCCTACGGCAACGCTTGCATAG
131 CTACGCTTTCGGCAACTCTTTGTATAAGGGTTGCGATATGTATGCCTACGGCAACGCTTGCATA-
* * *
96964575 GAGTTAGAGTTTGTGTAGTCCTAGGACGACACTTTTGTGGCGACACTTTCCTAAGTGTT-GCATA
195 GAGTT-G-GTTTGTGTAGTCCTAAGACGACACTTTTGGGGCGACACTTTCCTAAGTGTTGGAATA
96964639 GAC
258 GAC
* * * * * * **
96964642 TATGCTTTCGTCAACTCTTTATATAAGGGTTGGGATTTGTATGCCTAAGGCAATACTTGAATAAG
1 TACGCTTTCGCCAACTATTTGTATAAGGGTTGCGATATGTATGCCTAAGGCAACGCTTGAATAAG
* * *
96964707 AGTTGGTTTTTGTGTAGTCCTAAGATGACACTTTTGTGGCGACACTTTCCTAAGTGTTGCGATAA
66 AGTTGGCTTTTGTGTAGTCCTAAGA-CACACTTTTGTGGCGACACTTTCCTAAGTGTTGGGATAA
** *
96964772 ACTGTGCTTTCGGCAACTCTTTGTATAAGGGTTGTGATATGTATGCCTACGGCAACGCTTGAGCA
130 ACTACGCTTTCGGCAACTCTTTGTATAAGGGTTGCGATATGTATGCCTACGGCAACGCTT--GCA
* * *
96964837 -AGAGTTGGCTTTTGTCTAGTCCTAAGACTACAGTTTTGGGGCGACACTTTCCTAAGTGTT
193 TAGAGTTGG--TTTGTGTAGTCCTAAGACGACACTTTTGGGGCGACACTTTCCTAAGTGTT
96964897 CAGATAGACT
Statistics
Matches: 458, Mismatches: 47, Indels: 30
0.86 0.09 0.06
Matches are distributed among these distances:
260 1 0.00
261 137 0.30
262 101 0.22
263 103 0.22
264 1 0.00
265 3 0.01
266 1 0.00
267 2 0.00
270 1 0.00
271 90 0.20
272 18 0.04
ACGTcount: A:0.25, C:0.18, G:0.24, T:0.33
Consensus pattern (260 bp):
TACGCTTTCGCCAACTATTTGTATAAGGGTTGCGATATGTATGCCTAAGGCAACGCTTGAATAAG
AGTTGGCTTTTGTGTAGTCCTAAGACACACTTTTGTGGCGACACTTTCCTAAGTGTTGGGATAAA
CTACGCTTTCGGCAACTCTTTGTATAAGGGTTGCGATATGTATGCCTACGGCAACGCTTGCATAG
AGTTGGTTTGTGTAGTCCTAAGACGACACTTTTGGGGCGACACTTTCCTAAGTGTTGGAATAGAC
Found at i:96965190 original size:21 final size:21
Alignment explanation
Indices: 96965141--96965198 Score: 64
Period size: 21 Copynumber: 2.8 Consensus size: 21
96965131 TCAATTTAGG
* * *
96965141 TTAGGGTTTAAGGTTTAGTGT
1 TTAGAGTTTAAGGTTTAGGGA
96965162 TTAGAGTTTAAGGTTTAGGGA
1 TTAGAGTTTAAGGTTTAGGGA
* *
96965183 TTATAG-TTATGGTTTA
1 TTAGAGTTTAAGGTTTA
96965199 TGGTGTAAGG
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
20 9 0.28
21 23 0.72
ACGTcount: A:0.24, C:0.00, G:0.29, T:0.47
Consensus pattern (21 bp):
TTAGAGTTTAAGGTTTAGGGA
Found at i:96965261 original size:94 final size:93
Alignment explanation
Indices: 96965144--96965368 Score: 389
Period size: 94 Copynumber: 2.4 Consensus size: 93
96965134 ATTTAGGTTA
* * *
96965144 GGGTTTAAG-GTTTAGTGTTTAGAGTTTAAGGTTTAGGGATTATAGTTATGGTTTATGGTGTAAG
1 GGGTTTAAGATTTTAGAGTTTAGAGTTTAGGGTTTAGGGATTATAGTTATGGTTTATGGTGTAAG
96965208 GTTTTAGGGTTTTGTGTTTATGGGTTTG
66 GTTTTAGGGTTTTGTGTTTATGGGTTTG
* *
96965236 TGGTTTAATATTTTTAGAGTTTAGAGTTTAGGGTTTAGGGATTATAGTTATGGTTTATGGTGTAA
1 GGGTTTAAGA-TTTTAGAGTTTAGAGTTTAGGGTTTAGGGATTATAGTTATGGTTTATGGTGTAA
96965301 GGTTTTAGGGTTTTGTGTTTATGGGTTTG
65 GGTTTTAGGGTTTTGTGTTTATGGGTTTG
96965330 GGGTTTAAGATTTTAGAGTTTAGAGTTTAGGGTTTAGGG
1 GGGTTTAAGATTTTAGAGTTTAGAGTTTAGGGTTTAGGG
96965369 TTTAAGGTTT
Statistics
Matches: 124, Mismatches: 7, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
92 7 0.06
93 29 0.23
94 88 0.71
ACGTcount: A:0.20, C:0.00, G:0.33, T:0.48
Consensus pattern (93 bp):
GGGTTTAAGATTTTAGAGTTTAGAGTTTAGGGTTTAGGGATTATAGTTATGGTTTATGGTGTAAG
GTTTTAGGGTTTTGTGTTTATGGGTTTG
Found at i:96965271 original size:14 final size:14
Alignment explanation
Indices: 96965248--96965378 Score: 68
Period size: 14 Copynumber: 9.2 Consensus size: 14
96965238 GTTTAATATT
*
96965248 TTTAGAGTTTAGAG
1 TTTAGAGTTTAGGG
*
96965262 TTTAGGGTTTAGGG
1 TTTAGAGTTTAGGG
* * *
96965276 ATTATAG-TTATGG
1 TTTAGAGTTTAGGG
* *
96965289 TTTATG-GTGTAAGGT
1 TTTA-GAGT-TTAGGG
* * *
96965304 TTTAGGGTTTTGTG
1 TTTAGAGTTTAGGG
* *
96965318 TTTATGGGTTTGGGG
1 TTTA-GAGTTTAGGG
* *
96965333 TTTAAGATTTTAGAG
1 TTT-AGAGTTTAGGG
96965348 TTTAGAGTTTAGGG
1 TTTAGAGTTTAGGG
* *
96965362 TTTAGGGTTTAAGG
1 TTTAGAGTTTAGGG
96965376 TTT
1 TTT
96965379 TTTTAACATA
Statistics
Matches: 86, Mismatches: 25, Indels: 12
0.70 0.20 0.10
Matches are distributed among these distances:
13 9 0.10
14 47 0.55
15 29 0.34
16 1 0.01
ACGTcount: A:0.20, C:0.00, G:0.33, T:0.47
Consensus pattern (14 bp):
TTTAGAGTTTAGGG
Found at i:96965336 original size:29 final size:29
Alignment explanation
Indices: 96965304--96965371 Score: 75
Period size: 29 Copynumber: 2.3 Consensus size: 29
96965294 GGTGTAAGGT
* * *
96965304 TTTAGGGTTTT-GTGTTTATGGGTTTGGGG
1 TTTAGGGTTTTAGAGTTTA-GAGTTTAGGG
* *
96965333 TTTAAGATTTTAGAGTTTAGAGTTTAGGG
1 TTTAGGGTTTTAGAGTTTAGAGTTTAGGG
96965362 TTTAGGGTTT
1 TTTAGGGTTT
96965372 AAGGTTTTTT
Statistics
Matches: 31, Mismatches: 7, Indels: 2
0.77 0.17 0.05
Matches are distributed among these distances:
29 25 0.81
30 6 0.19
ACGTcount: A:0.16, C:0.00, G:0.34, T:0.50
Consensus pattern (29 bp):
TTTAGGGTTTTAGAGTTTAGAGTTTAGGG
Found at i:96966075 original size:22 final size:21
Alignment explanation
Indices: 96966050--96966104 Score: 58
Period size: 22 Copynumber: 2.6 Consensus size: 21
96966040 TCAAAAAATT
96966050 TATAAAATAAAAATAGAAAAAA
1 TATAAAATAAAAAT-GAAAAAA
***
96966072 TATATGTTAAAAATGAAAAAA
1 TATAAAATAAAAATGAAAAAA
*
96966093 T-TAAAACAAAAA
1 TATAAAATAAAAA
96966105 CTTTTTAGTA
Statistics
Matches: 26, Mismatches: 7, Indels: 2
0.74 0.20 0.06
Matches are distributed among these distances:
20 7 0.27
21 8 0.31
22 11 0.42
ACGTcount: A:0.71, C:0.02, G:0.05, T:0.22
Consensus pattern (21 bp):
TATAAAATAAAAATGAAAAAA
Found at i:96966270 original size:25 final size:25
Alignment explanation
Indices: 96966237--96966296 Score: 111
Period size: 25 Copynumber: 2.4 Consensus size: 25
96966227 TGCATCAAAG
96966237 TGCTGCATCTTCGTCGGCAGCCCTC
1 TGCTGCATCTTCGTCGGCAGCCCTC
*
96966262 TGCTGCATCTTCGTCGGCAGCTCTC
1 TGCTGCATCTTCGTCGGCAGCCCTC
96966287 TGCTGCATCT
1 TGCTGCATCT
96966297 CTGTAACGAC
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 34 1.00
ACGTcount: A:0.08, C:0.37, G:0.23, T:0.32
Consensus pattern (25 bp):
TGCTGCATCTTCGTCGGCAGCCCTC
Found at i:96966814 original size:35 final size:35
Alignment explanation
Indices: 96966716--96966801 Score: 154
Period size: 35 Copynumber: 2.5 Consensus size: 35
96966706 GCAAACCTAT
96966716 TGCATCTGCCGTCCACTGCCTGCCCCAGCCACCGG
1 TGCATCTGCCGTCCACTGCCTGCCCCAGCCACCGG
* *
96966751 TGCATCTACAGTCCACTGCCTGCCCCAGCCACCGG
1 TGCATCTGCCGTCCACTGCCTGCCCCAGCCACCGG
96966786 TGCATCTGCCGTCCAC
1 TGCATCTGCCGTCCAC
96966802 CACCTGCTCC
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
35 47 1.00
ACGTcount: A:0.14, C:0.47, G:0.21, T:0.19
Consensus pattern (35 bp):
TGCATCTGCCGTCCACTGCCTGCCCCAGCCACCGG
Found at i:96968196 original size:5 final size:5
Alignment explanation
Indices: 96968188--96968219 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
96968178 AATTATGTGA
96968188 AAAAT AAAAT AAAAT AAAAT -AAAT AAAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAA
96968220 GAACACACAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.15
5 22 0.85
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:96968213 original size:9 final size:9
Alignment explanation
Indices: 96968189--96968219 Score: 53
Period size: 9 Copynumber: 3.3 Consensus size: 9
96968179 ATTATGTGAA
96968189 AAATAAAAT
1 AAATAAAAT
96968198 AAAATAAAAT
1 -AAATAAAAT
96968208 AAATAAAAT
1 AAATAAAAT
96968217 AAA
1 AAA
96968220 GAACACACAA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 12 0.57
10 9 0.43
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (9 bp):
AAATAAAAT
Found at i:96972646 original size:5 final size:5
Alignment explanation
Indices: 96972636--96972667 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
96972626 CAATTTGTGA
96972636 AAAAT AAAAT AAAAT AAAAT -AAAT AAAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAA
96972668 GAACACAAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.15
5 22 0.85
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:96972661 original size:9 final size:9
Alignment explanation
Indices: 96972637--96972667 Score: 53
Period size: 9 Copynumber: 3.3 Consensus size: 9
96972627 AATTTGTGAA
96972637 AAATAAAAT
1 AAATAAAAT
96972646 AAAATAAAAT
1 -AAATAAAAT
96972656 AAATAAAAT
1 AAATAAAAT
96972665 AAA
1 AAA
96972668 GAACACAAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 12 0.57
10 9 0.43
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (9 bp):
AAATAAAAT
Found at i:96983868 original size:75 final size:74
Alignment explanation
Indices: 96983719--96983870 Score: 202
Period size: 75 Copynumber: 2.0 Consensus size: 74
96983709 CAGTTGTCTC
* * * *
96983719 ATAATTTTTTTGTGTCATGGGAATCAAGTTGACAACATGTTGCAATGTGTTGATTCCTTTTATTA
1 ATAATTTTTTTGTGTCATGGAAATCAAGTTGACAACATGTTGCAATGTGTTGACTACTTCTATTA
96983784 GGATTTTGT
66 GGATTTTGT
*
96983793 ATAA-TTTTTTGATGTCATGTGAAAT-AGGTTGACAACATGTTCGCAACT-TGTTGACTACTTCT
1 ATAATTTTTTTG-TGTCATG-GAAATCAAGTTGACAACATGTT-GCAA-TGTGTTGACTACTTCT
96983855 ATTAGGATTTTGT
62 ATTAGGATTTTGT
96983868 ATA
1 ATA
96983871 TAAATTACTA
Statistics
Matches: 69, Mismatches: 5, Indels: 7
0.85 0.06 0.09
Matches are distributed among these distances:
73 7 0.10
74 26 0.38
75 35 0.51
76 1 0.01
ACGTcount: A:0.26, C:0.11, G:0.19, T:0.44
Consensus pattern (74 bp):
ATAATTTTTTTGTGTCATGGAAATCAAGTTGACAACATGTTGCAATGTGTTGACTACTTCTATTA
GGATTTTGT
Found at i:96984154 original size:35 final size:34
Alignment explanation
Indices: 96984062--96984157 Score: 122
Period size: 35 Copynumber: 2.7 Consensus size: 34
96984052 GAGAAAGATC
96984062 TATCCCAACCTTTTTAAGTTTGCCTTAGACGGGTT
1 TATCCCAACCTTTTTAAG-TTGCCTTAGACGGGTT
* *
96984097 TA-CCCTAACCATTTTAAGGTTGCTTTAGACGGGTT
1 TATCCC-AACCTTTTTAA-GTTGCCTTAGACGGGTT
*
96984132 TATCCCAACTTTTTTTAAGTTGCCTT
1 TATCCCAAC-CTTTTTAAGTTGCCTT
96984158 GGAAAAGGTC
Statistics
Matches: 52, Mismatches: 5, Indels: 8
0.80 0.08 0.12
Matches are distributed among these distances:
34 3 0.06
35 39 0.75
36 10 0.19
ACGTcount: A:0.21, C:0.22, G:0.16, T:0.42
Consensus pattern (34 bp):
TATCCCAACCTTTTTAAGTTGCCTTAGACGGGTT
Found at i:96984182 original size:35 final size:34
Alignment explanation
Indices: 96984143--96984361 Score: 88
Period size: 35 Copynumber: 6.1 Consensus size: 34
96984133 ATCCCAACTT
96984143 TTTTTAAGTTGCCTTGGAAAAGGTCTATCGCAACC
1 TTTTTAAGTTGCCTT-GAAAAGGTCTATCGCAACC
* * **
96984178 TTTTTAGGGTTG-C-TGTAAACGGGTCTATCGCAAAA
1 TTTTTA-AGTTGCCTTG-AAA-AGGTCTATCGCAACC
* * * * *
96984213 TTTTTAACATTGTCTT-AGACAGGTCAATTGCAACC
1 TTTTTAA-GTTGCCTTGA-AAAGGTCTATCGCAACC
* * *
96984248 TTTTCTAAAAGTTGCCTTAAACAAGATCTATCGTAACC
1 TTTT-T--AAGTTGCCTTGAA-AAGGTCTATCGCAACC
* * * * *
96984286 TTTTTAGGGTTACCTT-AAACGAATCTATCACCAACC
1 TTTTTA-AGTTGCCTTGAAAAG-GTCTATC-GCAACC
* * *
96984322 TTTTTAAGGTTGCTTTAGACAA-GTCTATCCCAACC
1 TTTTTAA-GTTGCCTT-GAAAAGGTCTATCGCAACC
96984357 TTTTT
1 TTTTT
96984362 TTAAGGTTGC
Statistics
Matches: 136, Mismatches: 30, Indels: 36
0.67 0.15 0.18
Matches are distributed among these distances:
33 1 0.01
34 6 0.04
35 64 0.47
36 36 0.26
37 9 0.07
38 20 0.15
ACGTcount: A:0.28, C:0.20, G:0.16, T:0.37
Consensus pattern (34 bp):
TTTTTAAGTTGCCTTGAAAAGGTCTATCGCAACC
Found at i:96984190 original size:36 final size:35
Alignment explanation
Indices: 96984143--96984668 Score: 128
Period size: 38 Copynumber: 14.4 Consensus size: 35
96984133 ATCCCAACTT
96984143 TTTTTAA-GTTGCCTTGGAAAAGGTCTATCGCAACC
1 TTTTTAAGGTTGCCTT-GAAAAGGTCTATCGCAACC
* * **
96984178 TTTTTAGGGTTG-C-TGTAAACGGGTCTATCGCAAAA
1 TTTTTAAGGTTGCCTTG-AAA-AGGTCTATCGCAACC
** * * * *
96984213 TTTTTAACATTGTCTT-AGACAGGTCAATTGCAACC
1 TTTTTAAGGTTGCCTTGA-AAAGGTCTATCGCAACC
* * * *
96984248 TTTTCTAAAAGTTGCCTTAAACAAGATCTATCGTAACC
1 TTTT-T-AAGGTTGCCTTGAA-AAGGTCTATCGCAACC
* * * * *
96984286 TTTTTAGGGTTACCTT-AAACGAATCTATCACCAACC
1 TTTTTAAGGTTGCCTTGAAAAG-GTCTATC-GCAACC
* * *
96984322 TTTTTAAGGTTGCTTTAGACAA-GTCTATCCCAACC
1 TTTTTAAGGTTGCCTT-GAAAAGGTCTATCGCAACC
* * * *
96984357 TTTTTTTAAGGTTGCCATAT-ACAAGGTCTATTGTAACA
1 --TTTTTAAGGTTGCC-T-TGAAAAGGTCTATCGCAACC
* * * *
96984395 TTTTTAAAATGTTGCCGT-AGACAGGCCTATCGCAACC
1 TTTTT--AAGGTTGCCTTGA-AAAGGTCTATCGCAACC
* * * * * * *
96984432 TTTTTTCAAGGTTGCCGTAAACAAGATATACCACAACT
1 -TTTTT-AAGGTTGCCTTGAA-AAGGTCTATCGCAACC
* * * **
96984470 TTTTTAAAAGGTTGCCGTAGATAAGGTCTATAGCAATT
1 TTTTT--AAGGTTGCC-TTGAAAAGGTCTATCGCAACC
* * *
96984508 TTTATTAAGGGTTGCCGTAAACAAGG-CTTCTCGCAACC
1 TTT-TTAA-GGTTGCCTTGAA-AAGGTC-TATCGCAACC
* * *
96984546 TTTTTAAGGTTGCC--GAAAATGAATCTATAC-CGATC
1 TTTTTAAGGTTGCCTTGAAAA-G-GTCTAT-CGCAACC
* * *
96984581 TTTTTAACGTTG-CTCTCAACAA-GTCTATCACAACC
1 TTTTTAAGGTTGCCT-TGAA-AAGGTCTATCGCAACC
* * *
96984616 ATTTTTAACAGTTGTCTT-AAATTGGTCTATCGCAACC
1 -TTTTTAA-GGTTGCCTTGAAA-AGGTCTATCGCAACC
96984653 TTTTTCAAAGGTTGCC
1 TTTTT--AAGGTTGCC
96984669 CTTAACTAGG
Statistics
Matches: 355, Mismatches: 89, Indels: 92
0.66 0.17 0.17
Matches are distributed among these distances:
33 3 0.01
34 11 0.03
35 83 0.23
36 68 0.19
37 87 0.25
38 99 0.28
39 4 0.01
ACGTcount: A:0.29, C:0.20, G:0.16, T:0.35
Consensus pattern (35 bp):
TTTTTAAGGTTGCCTTGAAAAGGTCTATCGCAACC
Found at i:96984381 original size:37 final size:37
Alignment explanation
Indices: 96984309--96984560 Score: 144
Period size: 37 Copynumber: 6.8 Consensus size: 37
96984299 CTTAAACGAA
**
96984309 TCTATCACCAACC--TTTTTAAGGTTGCTTTAGACAAG
1 TCTATC-CCAACCTTTTTTTAAGGTTGCCGTAGACAAG
* *
96984345 TCTATCCCAACCTTTTTTTAAGGTTGCCATATACAAGG
1 TCTATCCCAACCTTTTTTTAAGGTTGCCGTAGACAA-G
*** * ** * *
96984383 TCTATTGTAACATTTTTAAAATGTTGCCGTAGACAGG
1 TCTATCCCAACCTTTTTTTAAGGTTGCCGTAGACAAG
* * * *
96984420 CCTATCGCAACCTTTTTTCAAGGTTGCCGTAAACAAG
1 TCTATCCCAACCTTTTTTTAAGGTTGCCGTAGACAAG
* * *
96984457 -ATATACCACAA-CTTTTTTAAAAGGTTGCCGTAGATAAGG
1 TCTAT-CC-CAACCTTTTTT-TAAGGTTGCCGTAGACAA-G
** *
96984496 TCTATAGCAA--TTTTTATTAAGGGTTGCCGTAAACAAG
1 TCTATCCCAACCTTTTT-TTAA-GGTTGCCGTAGACAAG
*
96984533 GCT-TCTCGCAACC--TTTTTAAGGTTGCCG
1 TCTATC-C-CAACCTTTTTTTAAGGTTGCCG
96984561 AAAATGAATC
Statistics
Matches: 166, Mismatches: 36, Indels: 28
0.72 0.16 0.12
Matches are distributed among these distances:
35 6 0.04
36 18 0.11
37 70 0.42
38 68 0.41
39 1 0.01
40 3 0.02
ACGTcount: A:0.28, C:0.20, G:0.17, T:0.35
Consensus pattern (37 bp):
TCTATCCCAACCTTTTTTTAAGGTTGCCGTAGACAAG
Found at i:96984381 original size:109 final size:107
Alignment explanation
Indices: 96984103--96984400 Score: 298
Period size: 109 Copynumber: 2.8 Consensus size: 107
96984093 GGTTTACCCT
* * * *
96984103 AACCATTTTAAGGTTGCTTTAGACGGGTTTATCCCAA-CTTTTTTTAAGTTGCCTTGGAA-AAGG
1 AACCTTTTTAAGGTTGCTTTAGACAGGTCTATCCCAACCTTTTTTTAAGTTGCCTT-AAACAAGG
* * ** *
96984166 TCTATCGCAACCTTTTTAGGGTTGCTGTAAACGGGTCTATCGC
65 TCTATCGTAACCTTTTTAGGGTTCCTGTAAACGAATCTATCCC
** ** * ** **
96984209 AAAATTTTTAACATTG-TCTTAGACAGGTCAATTGCAACCTTTTCTAAAAGTTGCCTTAAACAAG
1 AACCTTTTTAAGGTTGCT-TTAGACAGGTCTATCCCAACCTTTT-TTTAAGTTGCCTTAAACAAG
*
96984273 ATCTATCGTAACCTTTTTAGGGTTACCT-TAAACGAATCTATCACC
64 GTCTATCGTAACCTTTTTAGGGTT-CCTGTAAACGAATCTATC-CC
* * *
96984318 AACCTTTTTAAGGTTGCTTTAGACAAGTCTATCCCAACCTTTTTTTAAGGTTGCCATATACAAGG
1 AACCTTTTTAAGGTTGCTTTAGACAGGTCTATCCCAACCTTTTTTTAA-GTTGCCTTAAACAAGG
* *
96984383 TCTATTGTAACATTTTTA
65 TCTATCGTAACCTTTTTA
96984401 AAATGTTGCC
Statistics
Matches: 150, Mismatches: 34, Indels: 13
0.76 0.17 0.07
Matches are distributed among these distances:
105 1 0.01
106 25 0.17
107 7 0.05
108 51 0.34
109 65 0.43
110 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.16, T:0.37
Consensus pattern (107 bp):
AACCTTTTTAAGGTTGCTTTAGACAGGTCTATCCCAACCTTTTTTTAAGTTGCCTTAAACAAGGT
CTATCGTAACCTTTTTAGGGTTCCTGTAAACGAATCTATCCC
Found at i:96984978 original size:23 final size:23
Alignment explanation
Indices: 96984937--96985002 Score: 78
Period size: 23 Copynumber: 2.8 Consensus size: 23
96984927 GTTCACGAAC
* ** *
96984937 ACGAACATGTTTACAAACATTAA
1 ACGAACATGTTCATGAACATAAA
96984960 ACGAACATGTTCATGAACATAAA
1 ACGAACATGTTCATGAACATAAA
*
96984983 ATTGAACATGTTCATGAACA
1 A-CGAACATGTTCATGAACA
96985003 ATGTTAACAA
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
23 20 0.54
24 17 0.46
ACGTcount: A:0.45, C:0.17, G:0.12, T:0.26
Consensus pattern (23 bp):
ACGAACATGTTCATGAACATAAA
Found at i:96987603 original size:14 final size:14
Alignment explanation
Indices: 96987584--96987613 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
96987574 AATTCATTGG
96987584 ATTGAAACTTGATA
1 ATTGAAACTTGATA
96987598 ATTGAAACTTGATA
1 ATTGAAACTTGATA
96987612 AT
1 AT
96987614 ATTAGTTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.43, C:0.07, G:0.13, T:0.37
Consensus pattern (14 bp):
ATTGAAACTTGATA
Found at i:96993894 original size:24 final size:24
Alignment explanation
Indices: 96993838--96993888 Score: 93
Period size: 24 Copynumber: 2.1 Consensus size: 24
96993828 TGTACATAGA
*
96993838 ATAATAATGCATGGATACAATATT
1 ATAATAATGCATGGATAAAATATT
96993862 ATAATAATGCATGGATAAAATATT
1 ATAATAATGCATGGATAAAATATT
96993886 ATA
1 ATA
96993889 TGAATGAATA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.49, C:0.06, G:0.12, T:0.33
Consensus pattern (24 bp):
ATAATAATGCATGGATAAAATATT
Found at i:96994493 original size:25 final size:25
Alignment explanation
Indices: 96994413--96994497 Score: 70
Period size: 27 Copynumber: 3.4 Consensus size: 25
96994403 ATATATATAT
* *
96994413 AATTTTAAAGTAAATAA--TAAAAC
1 AATTTTAAAATAAATAATGTAAAAG
*
96994436 AA-TTTAAAATGAAA-AATGCATAAAG
1 AATTTTAAAAT-AAATAATGTA-AAAG
* *
96994461 CGAGTTTAAAATAAATAATGTAAAAG
1 -AATTTTAAAATAAATAATGTAAAAG
96994487 AATTTTAAAAT
1 AATTTTAAAAT
96994498 CTATATTACA
Statistics
Matches: 48, Mismatches: 7, Indels: 12
0.72 0.10 0.18
Matches are distributed among these distances:
22 9 0.19
23 5 0.10
24 1 0.02
25 12 0.25
26 8 0.17
27 13 0.27
ACGTcount: A:0.58, C:0.04, G:0.09, T:0.29
Consensus pattern (25 bp):
AATTTTAAAATAAATAATGTAAAAG
Found at i:96994850 original size:21 final size:20
Alignment explanation
Indices: 96994797--96994850 Score: 54
Period size: 21 Copynumber: 2.5 Consensus size: 20
96994787 CAATAACTTA
*
96994797 AAATATAAAATAATTTGAAAT
1 AAATAT-AAATAATTTGAAAG
*
96994818 AAATATATAATAATTTTTAAAG
1 AAATATA-AATAA-TTTGAAAG
*
96994840 AATTATAAATA
1 AAATATAAATA
96994851 TCTAAAAAGC
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
20 1 0.04
21 15 0.54
22 12 0.43
ACGTcount: A:0.59, C:0.00, G:0.04, T:0.37
Consensus pattern (20 bp):
AAATATAAATAATTTGAAAG
Found at i:96999811 original size:3 final size:3
Alignment explanation
Indices: 96999803--96999834 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
96999793 GGTATTATCC
96999803 TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TG
1 TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TG
96999835 GGAATGATTA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.31, C:0.00, G:0.34, T:0.34
Consensus pattern (3 bp):
TGA
Found at i:97000343 original size:16 final size:17
Alignment explanation
Indices: 97000324--97000362 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 17
97000314 GGATAAAGTG
*
97000324 ATTTTAAGTTTAAATT-
1 ATTTTAAATTTAAATTA
*
97000340 ATTTTAAATTTATATTA
1 ATTTTAAATTTAAATTA
97000357 ATTTTA
1 ATTTTA
97000363 GCCCAAATCA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
16 14 0.70
17 6 0.30
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.59
Consensus pattern (17 bp):
ATTTTAAATTTAAATTA
Found at i:97000568 original size:17 final size:18
Alignment explanation
Indices: 97000536--97000578 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
97000526 TTTCACAGAT
*
97000536 TTAATAGTTTATATTA-AA
1 TTAATA-TTTACATTATAA
*
97000554 TTTATATTTACATTATAA
1 TTAATATTTACATTATAA
97000572 TTAATAT
1 TTAATAT
97000579 AAAAGCAAAT
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
17 8 0.38
18 13 0.62
ACGTcount: A:0.42, C:0.02, G:0.02, T:0.53
Consensus pattern (18 bp):
TTAATATTTACATTATAA
Found at i:97008378 original size:2 final size:2
Alignment explanation
Indices: 97008371--97008438 Score: 52
Period size: 2 Copynumber: 34.5 Consensus size: 2
97008361 CTATATTACG
* * * *
97008371 TA TA TA TA TA TA TA TA TA CTA T- TT TA TG TA TA TA TC TT TA -A
1 TA TA TA TA TA TA TA TA TA -TA TA TA TA TA TA TA TA TA TA TA TA
*
97008412 TA CTA TA T- TA TT TA TA TA TA TA TA TA T
1 TA -TA TA TA TA TA TA TA TA TA TA TA TA T
97008439 TTTTTTTTAC
Statistics
Matches: 53, Mismatches: 8, Indels: 10
0.75 0.11 0.14
Matches are distributed among these distances:
1 3 0.06
2 46 0.87
3 4 0.08
ACGTcount: A:0.40, C:0.04, G:0.01, T:0.54
Consensus pattern (2 bp):
TA
Found at i:97008486 original size:25 final size:25
Alignment explanation
Indices: 97008457--97008508 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 25
97008447 ACATGTTTCT
*
97008457 TATGTATATATTTA-ATTATATTATG
1 TATGTAT-TATTTACACTATATTATG
*
97008482 TATGTATTTTTTACACTATATTATG
1 TATGTATTATTTACACTATATTATG
97008507 TA
1 TA
97008509 CATATTTTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 5 0.21
25 19 0.79
ACGTcount: A:0.33, C:0.04, G:0.08, T:0.56
Consensus pattern (25 bp):
TATGTATTATTTACACTATATTATG
Found at i:97024896 original size:10 final size:10
Alignment explanation
Indices: 97024869--97024911 Score: 52
Period size: 10 Copynumber: 4.3 Consensus size: 10
97024859 TTAAATTCTA
97024869 AAAGATAAAT
1 AAAGATAAAT
*
97024879 ACAA-ATAATT
1 A-AAGATAAAT
*
97024889 AAAGATAATT
1 AAAGATAAAT
97024899 AAAGATAAAT
1 AAAGATAAAT
97024909 AAA
1 AAA
97024912 AATGAATCCT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
9 2 0.07
10 25 0.86
11 2 0.07
ACGTcount: A:0.67, C:0.02, G:0.07, T:0.23
Consensus pattern (10 bp):
AAAGATAAAT
Found at i:97028804 original size:2 final size:2
Alignment explanation
Indices: 97028797--97028822 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
97028787 CATTCTAGAA
97028797 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
97028823 TAGTACAATG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:97029169 original size:3 final size:3
Alignment explanation
Indices: 97029155--97029190 Score: 54
Period size: 3 Copynumber: 12.0 Consensus size: 3
97029145 AATATTAAAG
* *
97029155 AAT AAT AGT AAT AAT AAC AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
97029191 CATCGATTGA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.64, C:0.03, G:0.03, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:97030995 original size:26 final size:26
Alignment explanation
Indices: 97030966--97031075 Score: 175
Period size: 26 Copynumber: 4.2 Consensus size: 26
97030956 TGATACAAAT
97030966 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
97030992 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
97031018 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
97031044 TGATAATGGTTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
97031070 TGATAA
1 TGATAA
97031076 GAATTTCATG
Statistics
Matches: 78, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 78 1.00
ACGTcount: A:0.34, C:0.05, G:0.24, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:97034503 original size:13 final size:13
Alignment explanation
Indices: 97034485--97034509 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
97034475 GCAGGGTCAC
97034485 CGCCGGCCACCGT
1 CGCCGGCCACCGT
97034498 CGCCGGCCACCG
1 CGCCGGCCACCG
97034510 CTCGAAAAAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.56, G:0.32, T:0.04
Consensus pattern (13 bp):
CGCCGGCCACCGT
Found at i:97035028 original size:18 final size:19
Alignment explanation
Indices: 97035000--97035038 Score: 55
Period size: 18 Copynumber: 2.1 Consensus size: 19
97034990 GGGTTAAGGG
97035000 TTAGTTGGGTT-TTGGGCTT
1 TTAGTTGGGTTGTTGGG-TT
97035019 TTAG-TGGGTTGTTGGGTT
1 TTAGTTGGGTTGTTGGGTT
97035037 TT
1 TT
97035039 GAGGCTAGGG
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 10 0.53
19 9 0.47
ACGTcount: A:0.05, C:0.03, G:0.38, T:0.54
Consensus pattern (19 bp):
TTAGTTGGGTTGTTGGGTT
Found at i:97038114 original size:40 final size:40
Alignment explanation
Indices: 97037950--97038115 Score: 176
Period size: 41 Copynumber: 4.1 Consensus size: 40
97037940 ACTAACCGAA
* *
97037950 AAACGCCGCAAAAGGTAAAGCAATAACGGCGTTTTTCTCAT
1 AAACGCC-CAAAAGGTAAAGCAATAGCGGCATTTTTCTCAT
* **
97037991 AAACGTCTCAAAAGGTAAAGCAATAGCGTTATTTTTCTCAT
1 AAACG-CCCAAAAGGTAAAGCAATAGCGGCATTTTTCTCAT
* **
97038032 AAACGCTGCAAAAGGTAAAGCAATAGTAG-AGTTTTT-TCAT
1 AAACGC-CCAAAAGGTAAAGCAATAGCGGCA-TTTTTCTCAT
* *
97038072 AAACGCCCTAAAGGTAAAGCAATAGTGGCATTTTTC-CTAT
1 AAACGCCCAAAAGGTAAAGCAATAGCGGCATTTTTCTC-AT
97038112 AAAC
1 AAAC
97038116 TTAGCAAATA
Statistics
Matches: 107, Mismatches: 12, Indels: 13
0.81 0.09 0.10
Matches are distributed among these distances:
39 25 0.23
40 19 0.18
41 62 0.58
42 1 0.01
ACGTcount: A:0.38, C:0.18, G:0.17, T:0.27
Consensus pattern (40 bp):
AAACGCCCAAAAGGTAAAGCAATAGCGGCATTTTTCTCAT
Found at i:97038123 original size:80 final size:82
Alignment explanation
Indices: 97037950--97038115 Score: 212
Period size: 80 Copynumber: 2.0 Consensus size: 82
97037940 ACTAACCGAA
* * * *
97037950 AAACGCCGCAAAAGGTAAAGCAATAACGGCGTTTTTCTCATAAACGTCTCAAAAGGTAAAGCAAT
1 AAACGCTGCAAAAGGTAAAGCAATAACAGAGTTTTTCTCATAAACGTCCCAAAAGGTAAAGCAAT
**
97038015 AGCGTTATTTTTCTCAT
66 AGCGGCATTTTTCTCAT
** *
97038032 AAACGCTGCAAAAGGTAAAGCAATAGTAGAGTTTTT-TCATAAACG-CCCTAAAGGTAAAGCAAT
1 AAACGCTGCAAAAGGTAAAGCAATAACAGAGTTTTTCTCATAAACGTCCCAAAAGGTAAAGCAAT
*
97038095 AGTGGCATTTTTC-CTAT
66 AGCGGCATTTTTCTC-AT
97038112 AAAC
1 AAAC
97038116 TTAGCAAATA
Statistics
Matches: 73, Mismatches: 10, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
79 1 0.01
80 32 0.44
81 9 0.12
82 31 0.42
ACGTcount: A:0.38, C:0.18, G:0.17, T:0.27
Consensus pattern (82 bp):
AAACGCTGCAAAAGGTAAAGCAATAACAGAGTTTTTCTCATAAACGTCCCAAAAGGTAAAGCAAT
AGCGGCATTTTTCTCAT
Found at i:97038145 original size:42 final size:42
Alignment explanation
Indices: 97038093--97038176 Score: 150
Period size: 42 Copynumber: 2.0 Consensus size: 42
97038083 AGGTAAAGCA
*
97038093 ATAGTGGCATTTTTCCTATAAACTTAGCAAATATTTTTTTAC
1 ATAGCGGCATTTTTCCTATAAACTTAGCAAATATTTTTTTAC
*
97038135 ATAGCGGCATTTTTCCTATAAACTTCGCAAATATTTTTTTAC
1 ATAGCGGCATTTTTCCTATAAACTTAGCAAATATTTTTTTAC
97038177 TTTTATTAAA
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 40 1.00
ACGTcount: A:0.30, C:0.17, G:0.10, T:0.44
Consensus pattern (42 bp):
ATAGCGGCATTTTTCCTATAAACTTAGCAAATATTTTTTTAC
Found at i:97043912 original size:10 final size:10
Alignment explanation
Indices: 97043885--97043927 Score: 52
Period size: 10 Copynumber: 4.3 Consensus size: 10
97043875 TTAAATTCTA
97043885 AAAGATAAAT
1 AAAGATAAAT
*
97043895 ACAA-ATAATT
1 A-AAGATAAAT
*
97043905 AAAGATAATT
1 AAAGATAAAT
97043915 AAAGATAAAT
1 AAAGATAAAT
97043925 AAA
1 AAA
97043928 AATGAATCCT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
9 2 0.07
10 25 0.86
11 2 0.07
ACGTcount: A:0.67, C:0.02, G:0.07, T:0.23
Consensus pattern (10 bp):
AAAGATAAAT
Found at i:97044579 original size:43 final size:40
Alignment explanation
Indices: 97044531--97044619 Score: 106
Period size: 43 Copynumber: 2.1 Consensus size: 40
97044521 AAGATGATCT
97044531 TTAGCGGCGTTTATAGGAAAAGCGCTGGTAAAGGTTATGTTCC
1 TTAGCGGCGTTTATAGGAAAAGCGC---TAAAGGTTATGTTCC
* * * * *
97044574 TTAGCGGCGTTTGTGGGGAAATCGCTAAAGGTTATGTTCT
1 TTAGCGGCGTTTATAGGAAAAGCGCTAAAGGTTATGTTCC
97044614 TTAGCG
1 TTAGCG
97044620 TGAAAAGGGT
Statistics
Matches: 41, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
40 20 0.49
43 21 0.51
ACGTcount: A:0.22, C:0.13, G:0.31, T:0.33
Consensus pattern (40 bp):
TTAGCGGCGTTTATAGGAAAAGCGCTAAAGGTTATGTTCC
Found at i:97048203 original size:3 final size:3
Alignment explanation
Indices: 97048189--97048224 Score: 54
Period size: 3 Copynumber: 12.0 Consensus size: 3
97048179 AATATTAAAG
* *
97048189 AAT AAT AGT AAT AAT AAC AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
97048225 CATCGATTGA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.64, C:0.03, G:0.03, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:97050314 original size:13 final size:13
Alignment explanation
Indices: 97050296--97050330 Score: 70
Period size: 13 Copynumber: 2.7 Consensus size: 13
97050286 TCAGTCACAT
97050296 GGCCGTGTGGCCA
1 GGCCGTGTGGCCA
97050309 GGCCGTGTGGCCA
1 GGCCGTGTGGCCA
97050322 GGCCGTGTG
1 GGCCGTGTG
97050331 ACTCCAAATC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.06, C:0.29, G:0.49, T:0.17
Consensus pattern (13 bp):
GGCCGTGTGGCCA
Found at i:97051547 original size:30 final size:29
Alignment explanation
Indices: 97051495--97051566 Score: 74
Period size: 30 Copynumber: 2.4 Consensus size: 29
97051485 TTTAATTTAG
*
97051495 TAAAA-AATAAAATTACACTTTAACCTTTT
1 TAAAATAATAAAATTACAATTTAA-CTTTT
** *
97051524 TAAAATAATAAAATTTTAATTTAATTTTT
1 TAAAATAATAAAATTACAATTTAACTTTT
*
97051553 TAAAAATTATAAAA
1 T-AAAATAATAAAA
97051567 ATATAAGCTA
Statistics
Matches: 36, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
29 10 0.28
30 26 0.72
ACGTcount: A:0.53, C:0.06, G:0.00, T:0.42
Consensus pattern (29 bp):
TAAAATAATAAAATTACAATTTAACTTTT
Found at i:97052340 original size:14 final size:16
Alignment explanation
Indices: 97052322--97052351 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
97052312 TTGAATTGAA
97052322 TTTT-TAATATTTTAT
1 TTTTATAATATTTTAT
97052337 TTTTATAATATTTTA
1 TTTTATAATATTTTA
97052352 ATTATTTATT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (16 bp):
TTTTATAATATTTTAT
Found at i:97052459 original size:11 final size:12
Alignment explanation
Indices: 97052441--97052465 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
97052431 TTAAAATTTT
97052441 AAATTTTTAATA
1 AAATTTTTAATA
97052453 AAATTTTTAATA
1 AAATTTTTAATA
97052465 A
1 A
97052466 TTTATTTAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (12 bp):
AAATTTTTAATA
Found at i:97055436 original size:59 final size:60
Alignment explanation
Indices: 97055365--97055479 Score: 153
Period size: 59 Copynumber: 1.9 Consensus size: 60
97055355 AATTGAATAA
**
97055365 TTGAGTGACCATTTTATAACTTTTCATAGTTG-GATGACA-AAAAAGAAATTTACTAGTAG
1 TTGAGTGACCATTTTATAACTTTTCATAAATGAG-TGACAGAAAAAGAAATTTACTAGTAG
* * * *
97055424 TTGAGTGGCCATTTTGTAATTTTTTATAAATGAGTGACAGAAAAAGAAATTTACTA
1 TTGAGTGACCATTTTATAACTTTTCATAAATGAGTGACAGAAAAAGAAATTTACTA
97055480 ATAATTGATT
Statistics
Matches: 48, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
59 31 0.65
60 17 0.35
ACGTcount: A:0.37, C:0.09, G:0.17, T:0.37
Consensus pattern (60 bp):
TTGAGTGACCATTTTATAACTTTTCATAAATGAGTGACAGAAAAAGAAATTTACTAGTAG
Found at i:97062869 original size:22 final size:20
Alignment explanation
Indices: 97062844--97062883 Score: 53
Period size: 22 Copynumber: 1.9 Consensus size: 20
97062834 AGTTGTCAAC
97062844 ATTTATATCTTTTTTCAATTTG
1 ATTTATAT-TTTTTT-AATTTG
*
97062866 ATTTGTATTTTTTTAATT
1 ATTTATATTTTTTTAATT
97062884 AAATTTGGTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 4 0.24
21 6 0.35
22 7 0.41
ACGTcount: A:0.23, C:0.05, G:0.05, T:0.68
Consensus pattern (20 bp):
ATTTATATTTTTTTAATTTG
Found at i:97065562 original size:12 final size:12
Alignment explanation
Indices: 97065545--97065575 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
97065535 GAAATGGAGA
97065545 ATCATCATCACC
1 ATCATCATCACC
*
97065557 ATCATCATCAGC
1 ATCATCATCACC
97065569 ATCATCA
1 ATCATCA
97065576 ATATGGTATG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.35, C:0.35, G:0.03, T:0.26
Consensus pattern (12 bp):
ATCATCATCACC
Found at i:97068315 original size:4 final size:4
Alignment explanation
Indices: 97068308--97068336 Score: 51
Period size: 4 Copynumber: 7.5 Consensus size: 4
97068298 CACCAAAAAA
97068308 AAAT AAAT -AAT AAAT AAAT AAAT AAAT AA
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AA
97068337 GAAGCAAAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
3 3 0.12
4 21 0.88
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (4 bp):
AAAT
Found at i:97076656 original size:171 final size:171
Alignment explanation
Indices: 97076421--97076732 Score: 491
Period size: 171 Copynumber: 1.8 Consensus size: 171
97076411 AAGAAGGTTT
* * *
97076421 AACCTTCAACTCAGATTGATCTAGTTTCAGTGATGTGATCATTGCATAGATTAACGAAACTAAAT
1 AACCTCCAACTCAGATTGACCTAGTTTCAATGATGTGATCATTGCATAGATTAACGAAACTAAAT
* * *
97076486 CAGATCTAAAAATCAGTGATGTGAATAG-GCCATGAAGCTAAATTATAAAGTCATTACTAAATTA
66 CAAATATAAAAATCAGTGATGTGAATAGTG-CATAAAGCTAAATTATAAAGTCATTACTAAATTA
*
97076550 ATCTAATTAAACTGTAATTAAAGAAGGTTTCTCGTCTGTAAA
130 ATCTAATCAAACTGTAATTAAAGAAGGTTTCTCGTCTGTAAA
*
97076592 AACCTCCAACTCAGATTGACCTAGTTTCAATGATGTGATTATTGCATAGATTAACGAAACTAAAT
1 AACCTCCAACTCAGATTGACCTAGTTTCAATGATGTGATCATTGCATAGATTAACGAAACTAAAT
* * * *
97076657 CAAATATAAAAATCAGTGATGTGATTAGTGCATAAAGCTAAATTATAAATTCATTGCTCAATTAA
66 CAAATATAAAAATCAGTGATGTGAATAGTGCATAAAGCTAAATTATAAAGTCATTACTAAATTAA
*
97076722 TTTAATCAAAC
131 TCTAATCAAAC
97076733 AGTTATTAGC
Statistics
Matches: 127, Mismatches: 13, Indels: 2
0.89 0.09 0.01
Matches are distributed among these distances:
171 126 0.99
172 1 0.01
ACGTcount: A:0.40, C:0.14, G:0.14, T:0.32
Consensus pattern (171 bp):
AACCTCCAACTCAGATTGACCTAGTTTCAATGATGTGATCATTGCATAGATTAACGAAACTAAAT
CAAATATAAAAATCAGTGATGTGAATAGTGCATAAAGCTAAATTATAAAGTCATTACTAAATTAA
TCTAATCAAACTGTAATTAAAGAAGGTTTCTCGTCTGTAAA
Found at i:97078166 original size:13 final size:13
Alignment explanation
Indices: 97078148--97078185 Score: 67
Period size: 13 Copynumber: 2.9 Consensus size: 13
97078138 ACTGAAATTT
*
97078148 TCAAAAGCACTTC
1 TCAAAAGTACTTC
97078161 TCAAAAGTACTTC
1 TCAAAAGTACTTC
97078174 TCAAAAGTACTT
1 TCAAAAGTACTT
97078186 TTTCACAGCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.39, C:0.24, G:0.08, T:0.29
Consensus pattern (13 bp):
TCAAAAGTACTTC
Found at i:97078695 original size:10 final size:10
Alignment explanation
Indices: 97078682--97078715 Score: 68
Period size: 10 Copynumber: 3.4 Consensus size: 10
97078672 ACCCCTTTAA
97078682 ATTGACCTCT
1 ATTGACCTCT
97078692 ATTGACCTCT
1 ATTGACCTCT
97078702 ATTGACCTCT
1 ATTGACCTCT
97078712 ATTG
1 ATTG
97078716 GGGTGTATAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 24 1.00
ACGTcount: A:0.21, C:0.26, G:0.12, T:0.41
Consensus pattern (10 bp):
ATTGACCTCT
Found at i:97079669 original size:3 final size:3
Alignment explanation
Indices: 97079655--97079710 Score: 62
Period size: 3 Copynumber: 18.3 Consensus size: 3
97079645 GACAATAAAG
*
97079655 AAT AAT AGT AAT AAT AAT AAT -AT AGAT AAT AAT -AT ATAT AAAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT A-AT AAT AAT AAT A-AT -AAT AAT
97079701 AAT AAT AAT A
1 AAT AAT AAT A
97079711 GTTAGAGATA
Statistics
Matches: 46, Mismatches: 2, Indels: 10
0.79 0.03 0.17
Matches are distributed among these distances:
2 4 0.09
3 34 0.74
4 7 0.15
5 1 0.02
ACGTcount: A:0.62, C:0.00, G:0.04, T:0.34
Consensus pattern (3 bp):
AAT
Found at i:97079924 original size:3 final size:3
Alignment explanation
Indices: 97079916--97079966 Score: 59
Period size: 3 Copynumber: 17.3 Consensus size: 3
97079906 TATAAATATG
* * * *
97079916 ATA ATA ATA ATA ATG ATA ATG ATA ATA ATA ATA AT- ATA GTA GTA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
97079963 ATA A
1 ATA A
97079967 AAGTAAAATT
Statistics
Matches: 41, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
2 2 0.05
3 39 0.95
ACGTcount: A:0.59, C:0.00, G:0.08, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:97079940 original size:47 final size:47
Alignment explanation
Indices: 97079854--97079946 Score: 111
Period size: 47 Copynumber: 2.0 Consensus size: 47
97079844 TAGAAAAAGG
*
97079854 ATAAGTATATATATAATAATAATAAATGACATTAGGATAA-AATAAAT
1 ATAAGTATATATATAATAATAATAAATGA-ATAAGGATAATAATAAAT
*
97079901 ATAAGTATAAATATGATAATAATAAT-AATG-ATAATGATAATAATAA
1 ATAAGTAT--ATAT-ATAATAATAATAAATGAATAAGGATAATAATAA
97079947 TAATATAGTA
Statistics
Matches: 40, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
47 16 0.40
48 5 0.12
49 8 0.20
50 11 0.28
ACGTcount: A:0.58, C:0.01, G:0.09, T:0.32
Consensus pattern (47 bp):
ATAAGTATATATATAATAATAATAAATGAATAAGGATAATAATAAAT
Found at i:97080337 original size:35 final size:32
Alignment explanation
Indices: 97080295--97080388 Score: 100
Period size: 37 Copynumber: 2.8 Consensus size: 32
97080285 TATGCATAAC
97080295 AATAAAAATACAATATTAAAATATATATACGAGT
1 AATAAAAATACAATATTAAAATATATATAC-A-T
**
97080329 AATAAAAAATGTATCTGTATTAAAA-ATATATACAT
1 AAT-AAAAA--TA-CAATATTAAAATATATATACAT
97080364 AATAAAAATACAATATTTAAAATAT
1 AATAAAAATACAATA-TTAAAATAT
97080389 TTACACAGTA
Statistics
Matches: 50, Mismatches: 4, Indels: 13
0.75 0.06 0.19
Matches are distributed among these distances:
31 3 0.06
32 8 0.16
33 2 0.04
34 8 0.16
35 9 0.18
36 1 0.02
37 10 0.20
38 9 0.18
ACGTcount: A:0.59, C:0.05, G:0.04, T:0.32
Consensus pattern (32 bp):
AATAAAAATACAATATTAAAATATATATACAT
Found at i:97080492 original size:23 final size:23
Alignment explanation
Indices: 97080456--97080500 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
97080446 GTACATAACA
97080456 TAAATATCATACATATA-ATATC
1 TAAATATCATACATATATATATC
97080478 TAAATATACATACATATATATAT
1 TAAATAT-CATACATATATATAT
97080501 AGTATTTAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 7 0.33
23 10 0.48
24 4 0.19
ACGTcount: A:0.51, C:0.11, G:0.00, T:0.38
Consensus pattern (23 bp):
TAAATATCATACATATATATATC
Found at i:97080666 original size:15 final size:14
Alignment explanation
Indices: 97080641--97080670 Score: 51
Period size: 15 Copynumber: 2.1 Consensus size: 14
97080631 TAATAATACT
97080641 ATATAATATATATA
1 ATATAATATATATA
97080655 ATATACATATATATA
1 ATATA-ATATATATA
97080670 A
1 A
97080671 GTATGACAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 5 0.33
15 10 0.67
ACGTcount: A:0.57, C:0.03, G:0.00, T:0.40
Consensus pattern (14 bp):
ATATAATATATATA
Found at i:97081262 original size:18 final size:18
Alignment explanation
Indices: 97081241--97081281 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
97081231 TCGAAAATAA
97081241 AATAAAAAGGAAA-AAAAT
1 AATAAAAA-GAAAGAAAAT
*
97081259 AATAAATAGAAAGAAAAT
1 AATAAAAAGAAAGAAAAT
97081277 AATAA
1 AATAA
97081282 TAATGTAATA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 4 0.19
18 17 0.81
ACGTcount: A:0.76, C:0.00, G:0.10, T:0.15
Consensus pattern (18 bp):
AATAAAAAGAAAGAAAAT
Found at i:97081280 original size:21 final size:22
Alignment explanation
Indices: 97081240--97081284 Score: 65
Period size: 21 Copynumber: 2.1 Consensus size: 22
97081230 TTCGAAAATA
97081240 AAATAAAAAGGAAAAAAATAAT
1 AAATAAAAAGGAAAAAAATAAT
* *
97081262 AAATAGAAA-GAAAATAATAAT
1 AAATAAAAAGGAAAAAAATAAT
97081283 AA
1 AA
97081285 TGTAATATCA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 13 0.62
22 8 0.38
ACGTcount: A:0.76, C:0.00, G:0.09, T:0.16
Consensus pattern (22 bp):
AAATAAAAAGGAAAAAAATAAT
Found at i:97082944 original size:18 final size:17
Alignment explanation
Indices: 97082923--97082956 Score: 59
Period size: 18 Copynumber: 1.9 Consensus size: 17
97082913 TTCCAAAAAT
97082923 TATAATAATATAAATTAA
1 TATAATAATA-AAATTAA
97082941 TATAATAATAAAATTA
1 TATAATAATAAAATTA
97082957 TATTTTAACT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (17 bp):
TATAATAATAAAATTAA
Found at i:97086558 original size:21 final size:21
Alignment explanation
Indices: 97086534--97086573 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
97086524 ACATTTTCTA
97086534 AAGTT-AAAAGTCAAAACCATT
1 AAGTTAAAAAG-CAAAACCATT
97086555 AAGTTAAAAAGCAAAACCA
1 AAGTTAAAAAGCAAAACCA
97086574 CATCGTTTTG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 13 0.72
22 5 0.28
ACGTcount: A:0.57, C:0.15, G:0.10, T:0.17
Consensus pattern (21 bp):
AAGTTAAAAAGCAAAACCATT
Found at i:97089076 original size:18 final size:19
Alignment explanation
Indices: 97089053--97089092 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
97089043 GTTGAACCGG
* *
97089053 TTTAA-TATTTTTTTTATT
1 TTTAATTATTTATTTAATT
97089071 TTTAATTATTTATTTAATT
1 TTTAATTATTTATTTAATT
97089090 TTT
1 TTT
97089093 GTTGGTTTAG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 5 0.26
19 14 0.74
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (19 bp):
TTTAATTATTTATTTAATT
Found at i:97090152 original size:19 final size:19
Alignment explanation
Indices: 97090130--97090168 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
97090120 TCAAAAGTTC
97090130 ATAAAAATTTGACTTGTAA
1 ATAAAAATTTGACTTGTAA
97090149 ATAAAAATTTGACTTGTAA
1 ATAAAAATTTGACTTGTAA
97090168 A
1 A
97090169 AAGAAGTTAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.49, C:0.05, G:0.10, T:0.36
Consensus pattern (19 bp):
ATAAAAATTTGACTTGTAA
Found at i:97091897 original size:50 final size:50
Alignment explanation
Indices: 97091843--97091941 Score: 198
Period size: 50 Copynumber: 2.0 Consensus size: 50
97091833 CATTGGTCTC
97091843 TATTCATTTTATAAAATTCCAATCCATCTAAATTATTTTCAAGCAAAAAG
1 TATTCATTTTATAAAATTCCAATCCATCTAAATTATTTTCAAGCAAAAAG
97091893 TATTCATTTTATAAAATTCCAATCCATCTAAATTATTTTCAAGCAAAAA
1 TATTCATTTTATAAAATTCCAATCCATCTAAATTATTTTCAAGCAAAAA
97091942 AATGGGATAA
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
50 49 1.00
ACGTcount: A:0.42, C:0.16, G:0.03, T:0.38
Consensus pattern (50 bp):
TATTCATTTTATAAAATTCCAATCCATCTAAATTATTTTCAAGCAAAAAG
Found at i:97094685 original size:2 final size:2
Alignment explanation
Indices: 97094678--97094704 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
97094668 GAAACAATGT
97094678 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
97094705 TGCATAATCT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:97099428 original size:131 final size:130
Alignment explanation
Indices: 97099288--97099633 Score: 358
Period size: 130 Copynumber: 2.7 Consensus size: 130
97099278 TGAAAACCTA
* * * * * *
97099288 AAGGAATATTCGATTGTTTTGACTAAACGCGAAATCATAACCCAACACGATAGGGCATGATTCC-
1 AAGGGATATTCGATTATTTTGAC-AAATGCGAAATTATAACCCAACACGTTAGGGCACGATTCCG
* * ** * * * *
97099352 CGAATCGT-CAAACACCGAGTATTGCCTTCGTTTTAAAGGATTTTTAGAAGAGCCGAGTGAAATT
65 CGAATCGTCCAAACACCAAATATCACCTTC-ATTTAAAGGA-TTTTAAAAGAGACGAATGAAATT
*
97099416 TTG
128 TCG
* * **
97099419 AAGGGATATTTGATTATTTTAAACAAATGCGAAATTGCAACCCAACACGTTAGGGCACGATTCCG
1 AAGGGATATTCGATTATTTT-GACAAATGCGAAATTATAACCCAACACGTTAGGGCACGATTCCG
* * * * * * *
97099484 CGAAT-TTCCAAACATCAAATCTCATCTTCATTTAAGGGATTTTAAAAGATATGAATGAAATTTC
65 CGAATCGTCCAAACACCAAATATCACCTTCATTTAAAGGATTTTAAAAGAGACGAATGAAATTTC
97099548 G
130 G
*
97099549 AAGGGAAATTCGATTATTTTGAGCAAATGCGAAATTATAACCCAACACGTTAGGGCACGATTCCG
1 AAGGGATATTCGATTATTTTGA-CAAATGCGAAATTATAACCCAACACGTTAGGGCACGATTCCG
* *
97099614 CGAATCG-CCGAACATCAAAT
65 CGAATCGTCCAAACACCAAAT
97099634 TTCGTCTTTG
Statistics
Matches: 177, Mismatches: 33, Indels: 11
0.80 0.15 0.05
Matches are distributed among these distances:
129 1 0.01
130 95 0.54
131 60 0.34
132 21 0.12
ACGTcount: A:0.35, C:0.18, G:0.19, T:0.27
Consensus pattern (130 bp):
AAGGGATATTCGATTATTTTGACAAATGCGAAATTATAACCCAACACGTTAGGGCACGATTCCGC
GAATCGTCCAAACACCAAATATCACCTTCATTTAAAGGATTTTAAAAGAGACGAATGAAATTTCG
Found at i:97100177 original size:16 final size:17
Alignment explanation
Indices: 97100156--97100187 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
97100146 AAGTTAATAG
97100156 AATATATGATA-ATAAA
1 AATATATGATACATAAA
97100172 AATATATGATACATAA
1 AATATATGATACATAA
97100188 CAAAACATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.59, C:0.03, G:0.06, T:0.31
Consensus pattern (17 bp):
AATATATGATACATAAA
Found at i:97104457 original size:3 final size:3
Alignment explanation
Indices: 97104449--97104497 Score: 89
Period size: 3 Copynumber: 16.3 Consensus size: 3
97104439 CAACCTATTC
*
97104449 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TTT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
97104497 T
1 T
97104498 AAAACAATGA
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 44 1.00
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (3 bp):
TCT
Found at i:97105707 original size:33 final size:33
Alignment explanation
Indices: 97105665--97105730 Score: 132
Period size: 33 Copynumber: 2.0 Consensus size: 33
97105655 ATTTCTAGGG
97105665 ATCAAATCCTACCTAAGTCAGCCTACTTTCAAA
1 ATCAAATCCTACCTAAGTCAGCCTACTTTCAAA
97105698 ATCAAATCCTACCTAAGTCAGCCTACTTTCAAA
1 ATCAAATCCTACCTAAGTCAGCCTACTTTCAAA
97105731 GAATGAGAAT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.36, C:0.30, G:0.06, T:0.27
Consensus pattern (33 bp):
ATCAAATCCTACCTAAGTCAGCCTACTTTCAAA
Found at i:97108223 original size:2 final size:2
Alignment explanation
Indices: 97108216--97108260 Score: 90
Period size: 2 Copynumber: 22.5 Consensus size: 2
97108206 ATGTTACATC
97108216 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
97108258 AT A
1 AT A
97108261 GAATGTAATT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 43 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:97108795 original size:16 final size:16
Alignment explanation
Indices: 97108776--97108806 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
97108766 CATTATATCA
97108776 TAAAAATAACTATTTT
1 TAAAAATAACTATTTT
*
97108792 TAAAAATAATTATTT
1 TAAAAATAACTATTT
97108807 AAAAGCATAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (16 bp):
TAAAAATAACTATTTT
Found at i:97117671 original size:53 final size:53
Alignment explanation
Indices: 97117600--97117718 Score: 220
Period size: 53 Copynumber: 2.2 Consensus size: 53
97117590 ATTAGGTTTA
* *
97117600 CAAGCTGCTCAAGTCGAGTATTAAGATACTCAAATTCTGTTTGGTCAATAGAT
1 CAAGCAGCTCAAGTCGAGTATTAAGATACTCAAATTCTGTTTGGTAAATAGAT
97117653 CAAGCAGCTCAAGTCGAGTATTAAGATACTCAAATTCTGTTTGGTAAATAGAT
1 CAAGCAGCTCAAGTCGAGTATTAAGATACTCAAATTCTGTTTGGTAAATAGAT
97117706 CAAGCAGCTCAAG
1 CAAGCAGCTCAAG
97117719 CTCAACTCAA
Statistics
Matches: 64, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
53 64 1.00
ACGTcount: A:0.34, C:0.18, G:0.19, T:0.29
Consensus pattern (53 bp):
CAAGCAGCTCAAGTCGAGTATTAAGATACTCAAATTCTGTTTGGTAAATAGAT
Found at i:97124058 original size:24 final size:24
Alignment explanation
Indices: 97124030--97124077 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
97124020 AAAAGATGAT
*
97124030 GATAGTAGTGATGAGGATGAAGAG
1 GATAGTACTGATGAGGATGAAGAG
* *
97124054 GATAGTTCTGCTGAGGATGAAGAG
1 GATAGTACTGATGAGGATGAAGAG
97124078 TCCAGTGAGG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.33, C:0.04, G:0.40, T:0.23
Consensus pattern (24 bp):
GATAGTACTGATGAGGATGAAGAG
Found at i:97127988 original size:71 final size:71
Alignment explanation
Indices: 97127881--97128051 Score: 297
Period size: 71 Copynumber: 2.4 Consensus size: 71
97127871 CAATTATCCT
* *
97127881 ATAAAGAGAGATAAAGATAACTTATGAGATAAAGATAAATGTCACACAATCCCACAATCATTAAT
1 ATAAAGGGAGATAAAGATAACTAATGAGATAAAGATAAATGTCACACAATCCCACAATCATTAAT
97127946 TACTAA
66 TACTAA
* *
97127952 ATAAAGGGTGATCAAGATAACTAATGAGATAAAGATAAATGTCACACAATCCCACAATCATTAAT
1 ATAAAGGGAGATAAAGATAACTAATGAGATAAAGATAAATGTCACACAATCCCACAATCATTAAT
97128017 TACTAA
66 TACTAA
*
97128023 ATAAAGGGAGATAAAGATAACTGATGAGA
1 ATAAAGGGAGATAAAGATAACTAATGAGA
97128052 ATTGATAAGG
Statistics
Matches: 93, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.50, C:0.13, G:0.15, T:0.23
Consensus pattern (71 bp):
ATAAAGGGAGATAAAGATAACTAATGAGATAAAGATAAATGTCACACAATCCCACAATCATTAAT
TACTAA
Found at i:97130901 original size:14 final size:16
Alignment explanation
Indices: 97130862--97130893 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
97130852 ATTGATTTCA
97130862 TATT-ATATATATTGT
1 TATTCATATATATTGT
97130877 TATTCATATATATTGT
1 TATTCATATATATTGT
97130893 T
1 T
97130894 TTGTATATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 4 0.25
16 12 0.75
ACGTcount: A:0.31, C:0.03, G:0.06, T:0.59
Consensus pattern (16 bp):
TATTCATATATATTGT
Found at i:97131159 original size:15 final size:17
Alignment explanation
Indices: 97131120--97131160 Score: 50
Period size: 15 Copynumber: 2.5 Consensus size: 17
97131110 TATGTTAAAC
97131120 TTTATATTTTATGTATTA
1 TTTAT-TTTTATGTATTA
*
97131138 ATTATTTTTAT-T-TTA
1 TTTATTTTTATGTATTA
97131153 TTTATTTT
1 TTTATTTT
97131161 ATGATTTATT
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
15 10 0.48
16 1 0.05
17 6 0.29
18 4 0.19
ACGTcount: A:0.24, C:0.00, G:0.02, T:0.73
Consensus pattern (17 bp):
TTTATTTTTATGTATTA
Found at i:97132043 original size:16 final size:15
Alignment explanation
Indices: 97132018--97132050 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 15
97132008 GATTAAAAAA
97132018 TTAGCAGTTAGTTAG
1 TTAGCAGTTAGTTAG
97132033 TTAGACAGTTAGTTAG
1 TTAG-CAGTTAGTTAG
97132049 TT
1 TT
97132051 GTTAAGCTGA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 4 0.24
16 13 0.76
ACGTcount: A:0.27, C:0.06, G:0.24, T:0.42
Consensus pattern (15 bp):
TTAGCAGTTAGTTAG
Found at i:97137152 original size:220 final size:219
Alignment explanation
Indices: 97136769--97141782 Score: 5488
Period size: 220 Copynumber: 22.8 Consensus size: 219
97136759 GATCTTGACA
* * *
97136769 GATCATAATGCCCATTTTGTCAATTGTAAAATGTGTTCCTTACTTCTAATTTCTCCATTCTAGTT
1 GATCATAATGCCCATTTCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTT
* * * * *
97136834 CATTCTTGTGCAGATGGCAAGAAAACAGGTGGACATACTGCAACCCTTTCTGCTCCCAAAAAGAA
66 CATTCTGGTGCAGATGGCAAGAAAGC-GATGGACATACTGCAACCCCTCCTGCTCCCAAAAAGAA
* * * * * * * * *
97136899 GGAAAACCTAGTTACTCCCCAAAAGGCAGGCAGAATTTCCCTCTCATCTTTTCCTTTTTAGAGAT
130 GGCAAAGCTGGTCACTCCCCAAAAGACAGGCAGATTTTCCCTCCCATCTTTTCCCTTCTAGAGAT
97136964 TTTGATTGCTATTTTACTAATGAGG
195 TTTGATTGCTATTTTACTAATGAGG
* * * * *
97136989 GATCATAATGCCCATTTCGTCAATTGTAAAATGTATTCTTTACTTCAAATTTCACCGTTCTAATT
1 GATCATAATGCCCATTTCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTT
* * *
97137054 CATTCTGGTGCAGATGGTAAGAAAGCGTATGGACAAACTGCAACCCCTCCTACTCCCAAAAAGAA
66 CATTCTGGTGCAGATGGCAAGAAAGCG-ATGGACATACTGCAACCCCTCCTGCTCCCAAAAAGAA
* * * * *
97137119 GGCAAAGCTGGTCACTCCCCAAAAGATAGGCAGATTTTCCCTCTCATCTTTACTCTTTTAGAGAT
130 GGCAAAGCTGGTCACTCCCCAAAAGACAGGCAGATTTTCCCTCCCATCTTTTCCCTTCTAGAGAT
* **
97137184 TTTGATTGCTATTTTACTAATAAAT
195 TTTGATTGCTATTTTACTAATGAGG
* * *** ** * * *
97137209 TATTATAATGTAAATTTTATCAATTGTAAAATGTGTTCATTACTTCAAATTTCTCTGTTCTAGTT
1 GATCATAATGCCCATTTCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTT
* * * *
97137274 CATTCTGGTGCAAATGGCAAGAAAGCGGGTTGACATACTGCAACCCCTCCTACTCCCAAAAAGAA
66 CATTCTGGTGCAGATGGCAAGAAAGC-GATGGACATACTGCAACCCCTCCTGCTCCCAAAAAGAA
* * * * * *
97137339 GGCAAAGTTGCTCACTCCCCAAAAGACAGACAGATTTTCTCTCCCATCATTGCCCTTCTAGAGAT
130 GGCAAAGCTGGTCACTCCCCAAAAGACAGGCAGATTTTCCCTCCCATCTTTTCCCTTCTAGAGAT
*
97137404 TTTGATTGCTATTTTACTAATGATG
195 TTTGATTGCTATTTTACTAATGAGG
* * *
97137429 GATCATAATGCCCATTTCGTCAATTGTAAAATTTGTTTCTTACTTCCAATTTCTCTGTTCTAGTT
1 GATCATAATGCCCATTTCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTT
* ** * ** * **
97137494 TATTCTGGTGCAGAAAGCAAGAAAGCGTATGGATATACAACAACCCCTCTTGCTCTAAAAAAGAA
66 CATTCTGGTGCAGATGGCAAGAAAGCG-ATGGACATACTGCAACCCCTCCTGCTCCCAAAAAGAA
* * * * *
97137559 GGCAAAACTGGTCACTCCCCAAAAGATAGGTAGATTTTCCCTTCCATCTTTGCCCTTCTAGAGAT
130 GGCAAAGCTGGTCACTCCCCAAAAGACAGGCAGATTTTCCCTCCCATCTTTTCCCTTCTAGAGAT
* * * *
97137624 TTTAATTGCTATTTTAATAATAAGA
195 TTTGATTGCTATTTTACTAATGAGG
* *
97137649 GATCATAATGCCCATTTCGTCAATTGTAAAATGTGTTCCTTATTTCCAATTTCTCCGTTCTAGCT
1 GATCATAATGCCCATTTCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTT
* * * * *
97137714 CATTCTGGTACAGATGGCAAGTAAGAG-GGTGGACAAACTGCAACCCCTCCTACTCCCCAAAAGA
66 CATTCTGGTGCAGATGGCAAG-AA-AGCGATGGACATACTGCAACCCCTCCTGCTCCCAAAAAGA
* * *
97137778 AGGCAAAGCTGGTCACTTCCCAAAAGACAGGCAGATTTTCCCTCCCATCTTTGCCCTACTAGAGA
129 AGGCAAAGCTGGTCACTCCCCAAAAGACAGGCAGATTTTCCCTCCCATCTTTTCCCTTCTAGAGA
*
97137843 -TTTGATTGCTATTTTACTAATGAGA
194 TTTTGATTGCTATTTTACTAATGAGG
* * * *
97137868 GATCATAATACCCATTTCATCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTTCGATCTAGTT
1 GATCATAATGCCCATTTCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTT
* * * * *
97137933 CATTTTGGTGCAAATAGCAAGAAATAG-GGTGGACATATTGCAACCCCTCCTGCTCCCAAAAAGA
66 CATTCTGGTGCAGATGGCAAG-AA-AGCGATGGACATACTGCAACCCCTCCTGCTCCCAAAAAGA
* ** * * * * *
97137997 AGGCAAAGCTGTTCACTCTACAAAAAATAGGTAGACTTTCCGTCCCATC-TTTCCCTTCTAGAGA
129 AGGCAAAGCTGGTCACTCCCCAAAAGACAGGCAGATTTTCCCTCCCATCTTTTCCCTTCTAGAGA
*
97138061 TTTTGATTGCTATTTTACAAATGAGG
194 TTTTGATTGCTATTTTACTAATGAGG
* * * * * * * *
97138087 AATAATAAT-CCCGTTTCGTTAATTGTAAAATATGTTCTTTACTTTCAATTTCTCTGTTCTAGTT
1 GATCATAATGCCCATTTCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTT
* * *
97138151 CATTCTAGTGCAGATGG-AAAAAAGCGAGTGGACATACTGTAACCCCTCCTGCTCCCAAAAAGAA
66 CATTCTGGTGCAGATGGCAAGAAAGCGA-TGGACATACTGCAACCCCTCCTGCTCCCAAAAAGAA
* * * * * *
97138215 GACAAAGCTGGTCACTCCCCAAAAGACAAGTAGATTTTCCCTCTCATCTTTGCCCCTCTAGAGAT
130 GGCAAAGCTGGTCACTCCCCAAAAGACAGGCAGATTTTCCCTCCCATCTTTTCCCTTCTAGAGAT
**
97138280 TTTGATTATTATTTTACTAATGAGG
195 TTTGATTGCTATTTTACTAATGAGG
* ** * * * *
97138305 GATCATAATACTTATTTCGTCAATTGTAAAATGTATTCCTTACTTCAAATATCACCGTTCTAGTT
1 GATCATAATGCCCATTTCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTT
* * * * * *
97138370 CATTCTAGTGCAGATGGTAAGAAAGCGTATAGACATACTGCAACCTCTCCTACTCCTAAAAAGAA
66 CATTCTGGTGCAGATGGCAAGAAAGCG-ATGGACATACTGCAACCCCTCCTGCTCCCAAAAAGAA
* * * * * *
97138435 GGAAAAGCTAGTCACTTCCCAAAAGATAGGCAGATTTTCCCTCCCATCTTTGCCCTTTTAGAGAT
130 GGCAAAGCTGGTCACTCCCCAAAAGACAGGCAGATTTTCCCTCCCATCTTTTCCCTTCTAGAGAT
* * **
97138500 TTTGATTGTTATTTTACTAATAAAA
195 TTTGATTGCTATTTTACTAATGAGG
* * *
97138525 GATCATAATGCCCATTTCATCAATTGTAAAATGTGTTCCTTACTTCTAATTTCTCTGTTCTAGTT
1 GATCATAATGCCCATTTCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTT
* * * * * **
97138590 CATTCTGGTGCAGATGGCAAGAAAGCGGGTGAACATACTGTAACCTCTCTTGCTCTAAAAAAGAA
66 CATTCTGGTGCAGATGGCAAGAAAGC-GATGGACATACTGCAACCCCTCCTGCTCCCAAAAAGAA
* * * ** * * *
97138655 AGCAAAGCTAGTCACTCCCTAAAAGACAGAAAGATTTTCCGTCCCATCTTTGCCCTTCTAAAGAT
130 GGCAAAGCTGGTCACTCCCCAAAAGACAGGCAGATTTTCCCTCCCATCTTTTCCCTTCTAGAGAT
* * *
97138720 TTTGATTACTATTTTACTAATAAAG
195 TTTGATTGCTATTTTACTAATGAGG
* * *
97138745 GATCATAATGCCCATTTCGTCAATTGTAAAATATGTTTCTTACTTCCAATTTCTCCATTCTAGTT
1 GATCATAATGCCCATTTCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTT
* ** ** * * * * * * * *
97138810 TATTCTTCTATAAATGACAAAAAAGCGGGTAGACTTACTACAACCCCTCTTGCTCCCAAAAAGAA
66 CATTCTGGTGCAGATGGCAAGAAAGC-GATGGACATACTGCAACCCCTCCTGCTCCCAAAAAGAA
* * * * * * * *
97138875 GGGAAAGCTAGTTACTCTCCAAAAGTCAAGCAGATTTTCCCTCCCATCTTTGCCCTTTTAGAGAT
130 GGCAAAGCTGGTCACTCCCCAAAAGACAGGCAGATTTTCCCTCCCATCTTTTCCCTTCTAGAGAT
*
97138940 TTTGATTGCTATTTTACTAATAAGG
195 TTTGATTGCTATTTTACTAATGAGG
* * *
97138965 GATCATAATGCCCATTTCGTTAATTGTAAAATGTGTTTCTTACTTCCATTTTCTCCGTTCTAGTT
1 GATCATAATGCCCATTTCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTT
* * * * *
97139030 CATTTTGGTGCAGATGGCAAGAAAGTGGGTGGACATACTGCAACCCCTCCTGCTCCAAAAAAAAA
66 CATTCTGGTGCAGATGGCAAGAAAG-CGATGGACATACTGCAACCCCTCCTGCTCCCAAAAAGAA
* * * * * * *
97139095 GGCAAAGTTGTTCACTCCCCAAAAGATAGACAGGTTTTCCCTTCCATCTTTGCCCTTCTAGAGAT
130 GGCAAAGCTGGTCACTCCCCAAAAGACAGGCAGATTTTCCCTCCCATCTTTTCCCTTCTAGAGAT
* *
97139160 TTTGATTACTATTTTACTAATGAGT
195 TTTGATTGCTATTTTACTAATGAGG
* * * * *
97139185 GATCATAATGCCCATTTCGTTAATTGTAAAATGTGTTCCTTACTTCCAATTTCACTGTTCTAATC
1 GATCATAATGCCCATTTCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTT
* * *
97139250 CATTTTGGTGCAGATGGCAAGAAAGCGAGTGGACATACTGTAACCCCTCTTGCTCCCAAAAAGAA
66 CATTCTGGTGCAGATGGCAAGAAAGCGA-TGGACATACTGCAACCCCTCCTGCTCCCAAAAAGAA
* * * * * **
97139315 GGCAAAGTTGGTCACT-CCTAAAAAATCAAGCAGATTTTCCCTCCCATCTTTGCTATTCTAGAGA
130 GGCAAAGCTGGTCACTCCCCAAAAGA-CAGGCAGATTTTCCCTCCCATCTTTTCCCTTCTAGAGA
* ** *
97139379 TTTTGATTACTATTTTTACTAAAAATG
194 TTTTGATTGCTA-TTTTACTAATGAGG
* * * * * *
97139406 GATCATAATGCCCATTTCATCTATTGTAAAATATGTTCCTTATTTCTAGTTTCTCCGTTCTAGTT
1 GATCATAATGCCCATTTCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTT
* * * * * *
97139471 TATTCTGGTGCATATGGCAAGAAAGCGGGTGGACATACTACAACCCCTCCTGCACCCATAAAGAA
66 CATTCTGGTGCAGATGGCAAGAAAGC-GATGGACATACTGCAACCCCTCCTGCTCCCAAAAAGAA
* * * * * ** * * *
97139536 GGCAAAACTGGTCAGTCCCCAAAAGACAAGCAAACTTTATCTACCATATTTGCCCTTCTAGAGAT
130 GGCAAAGCTGGTCACTCCCCAAAAGACAGGCAGATTTTCCCTCCCATCTTTTCCCTTCTAGAGAT
* * *
97139601 TTTGATTACTATTTTACTAATAAGA
195 TTTGATTGCTATTTTACTAATGAGG
* * * * *
97139626 TATCATAATGCCTATTTCGTTAATTGTAAAATGTGTTCTTTA-TATCCAATTTCTCCATTCTAGT
1 GATCATAATGCCCATTTCGTCAATTGTAAAATGTGTTCCTTACT-TCCAATTTCTCCGTTCTAGT
* * ** * * *
97139690 TTATTCTGATGCAGATAACAAGAAAGCGAGTGGACATACTGCAACCCTTCCTACTCCTAAAAAGA
65 TCATTCTGGTGCAGATGGCAAGAAAGCGA-TGGACATACTGCAACCCCTCCTGCTCCCAAAAAGA
* * * * *
97139755 AGGCAAAGCTGGTCAATCCCCAAAAGACAAGCAGATTTTCCCTCCCATCTTTAACCCTTTTAAAG
129 AGGCAAAGCTGGTCACTCCCCAAAAGACAGGCAGATTTTCCCTCCCATCTTT-TCCCTTCTAGAG
* * **
97139820 TTTTTTATTGCTATTTTACTAATGTCG
193 ATTTTGATTGCTATTTTACTAATGAGG
97139847 GATCATAATGCCCATTTCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTT
1 GATCATAATGCCCATTTCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTT
* ** * ** * *
97139912 TATT-TAGGAACAGATAGCAAGAAATTAGGTGGACATATTGCAACCCCTCCTGCTCCCAAAAAGA
66 CATTCT-GGTGCAGATGGCAAGAAA-GCGATGGACATACTGCAACCCCTCCTGCTCCCAAAAAGA
* * * * * *
97139976 AGGCAAAGTTGGTCACTCCTCAAAAGACAAGTAGATTTTCCATTCCATCTTTGT-CCTTCTAGAG
129 AGGCAAAGCTGGTCACTCCCCAAAAGACAGGCAGATTTTCCCTCCCATCTTT-TCCCTTCTAGAG
*
97140040 ATTTTGATTGCTATTTTACTAATAAGG
193 ATTTTGATTGCTATTTTACTAATGAGG
* * * * *
97140067 GATCATAATGCCGATTTTGTCAATTGTAAAATGTGTTCCTTATTTTCAATTTCTCCGTTTTAGTT
1 GATCATAATGCCCATTTCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTT
* * *
97140132 CATTCTGGTGCAGATGGCAAGAAAGTGAGTGGACATACTACAACCCCTTCTGCTCCCAAAAAGAA
66 CATTCTGGTGCAGATGGCAAGAAAGCGA-TGGACATACTGCAACCCCTCCTGCTCCCAAAAAGAA
* * * * *
97140197 GGCAAAGCTGGTCATTCCCGAAAAGACAAGCAGCA-TTTCCTTCCCATATTTT-CCTTCTAGAGA
130 GGCAAAGCTGGTCACTCCCCAAAAGACAGGCAG-ATTTTCCCTCCCATCTTTTCCCTTCTAGAGA
*
97140260 TTTTTATTGCTATTTTACTAATGAGG
194 TTTTGATTGCTATTTTACTAATGAGG
* *** * * ** ***
97140286 AATCATAATGCTTGTTTCGTTAATTGTAAAATATGTT-CTGTACTTTTAATTTCTATATTCTAGT
1 GATCATAATGCCCATTTCGTCAATTGTAAAATGTGTTCCT-TACTTCCAATTTCTCCGTTCTAGT
* * * * * * * * *
97140350 TTATTCTGGTGCAGATGACAAAAAAGCAAGTGGACATACTACAATCCCTCATACTCTCAAAAAGA
65 TCATTCTGGTGCAGATGGCAAGAAAGCGA-TGGACATACTGCAACCCCTCCTGCTCCCAAAAAGA
** * * * *
97140415 AGGCAAATTTGGTCACTCCTCAAAAGACAAGCAGATTTTCCAT-CAATCTTTGT-CCTTCTAGAG
129 AGGCAAAGCTGGTCACTCCCCAAAAGACAGGCAGATTTTCCCTCCCATCTTT-TCCCTTCTAGAG
* *
97140478 ATTTTGATTGTTATTTTACTAATAAGG
193 ATTTTGATTGCTATTTTACTAATGAGG
* * * * *
97140505 GATCATAATGCCCATTTCGTCAATTGTAAAATTTGTTCCTTATTTTCAATTTCTCCTTTTTAGTT
1 GATCATAATGCCCATTTCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTT
* * *
97140570 CATTCTGATGCAGATGGTAAGAAAGCGAGTGGACATACTGCAACCTCTCCTGCTCCCAAAAA-AA
66 CATTCTGGTGCAGATGGCAAGAAAGCGA-TGGACATACTGCAACCCCTCCTGCTCCCAAAAAGAA
* * ** ** *
97140634 AGCAAAGCTGGTCACTCCCAAAAAGACAGGCAGCCTTTCATTCCCATC-CTTCCCTTCTAGAGAT
130 GGCAAAGCTGGTCACTCCCCAAAAGACAGGCAGATTTTCCCTCCCATCTTTTCCCTTCTAGAGAT
97140698 TTTGATTGCTATTTTACTAATGAGG
195 TTTGATTGCTATTTTACTAATGAGG
** * * * ** **
97140723 GATCATAATGCCTGTTTTGTTAATTGTAAAATATGTT-CTGTACTTTTAATTTCTCTATTCTAGT
1 GATCATAATGCCCATTTCGTCAATTGTAAAATGTGTTCCT-TACTTCCAATTTCTCCGTTCTAGT
* * ** * * * * *
97140787 TCATTCTGGTGCAGATGGAAAAAAAATGAGTAGATATACTACAACCTCTCATGCTCCCAAAAAGA
65 TCATTCTGGTGCAGATGGCAAGAAAGCGA-TGGACATACTGCAACCCCTCCTGCTCCCAAAAAGA
* * * * * * *
97140852 AGGCAAAGCTCGTCAATCCCTAAAA-ATTAAGCAGATTTTCCCTCCCATCTTTACCATTCTAGAG
129 AGGCAAAGCTGGTCACTCCCCAAAAGA-CAGGCAGATTTTCCCTCCCATCTTTTCCCTTCTAGAG
** *
97140916 ATTTTGATTGCTATTTTTACTAAAAATG
193 ATTTTGATTGCTA-TTTTACTAATGAGG
* * * * *
97140944 GATCATAATGCCCATTTCGTCTATTGTAAAATATGTTCCTTATTTCCAATTTCTTCGTTTTAGTT
1 GATCATAATGCCCATTTCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTT
* * * * *
97141009 CATTCTGGTGCATATGGCAAGAAAGCGGGTGGACATTCTACAACCCCTCCTGCACCCAAAAAGAA
66 CATTCTGGTGCAGATGGCAAGAAAGC-GATGGACATACTGCAACCCCTCCTGCTCCCAAAAAGAA
* * ** * *
97141074 GGCAAAACTAGTCACTCCCCAAAAGACAGGCA-AGTTTTATCTACCATCTTTGCCCTTCTAGAGA
130 GGCAAAGCTGGTCACTCCCCAAAAGACAGGCAGA-TTTTCCCTCCCATCTTTTCCCTTCTAGAGA
* * *
97141138 TTTTGATTACTATTTTACTAATAAGA
194 TTTTGATTGCTATTTTACTAATGAGG
* * * * * * * *
97141164 GATCATAATGCCTATTTCGTTAATTGTAAAATATGTTCTTTACATCCAAATTCTCCATTCTAATT
1 GATCATAATGCCCATTTCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTT
* ** * * * * *
97141229 TATTCTGGTGCAGATAACAAGAAAGTGAGTGGACATACTACAACACCTCATACTCCCAAAAAGAA
66 CATTCTGGTGCAGATGGCAAGAAAGCGA-TGGACATACTGCAACCCCTCCTGCTCCCAAAAAGAA
* * * *
97141294 GGCAAAGCTAGTTACTCTCCAAAAG-CAAGGCAGATTTTCCCTCCCAT-TTTTAACCCTTTTAGA
130 GGCAAAGCTGGTCACTCCCCAAAAGAC-AGGCAGATTTTCCCTCCCATCTTTT--CCCTTCTAGA
*
97141357 G-TGTTTGATTGCTATTTTACTAATGTGG
192 GAT-TTTGATTGCTATTTTACTAATGAGG
* *
97141385 GATCATAATGCCCATTTCGTCAATTGTAAAATGTGTTCTTTACTTCCAATTTCTCCATTCTAGTT
1 GATCATAATGCCCATTTCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTT
* * ** * * * *
97141450 TATTCTAG-AAAGATAGCAAGAAATCAGGTGGACATATTGCAACCCCTCCTGCTCCCAAAAAGAA
66 CATTCTGGTGCAGATGGCAAGAAAGC-GATGGACATACTGCAACCCCTCCTGCTCCCAAAAAGAA
* * * * *
97141514 GGTAAAGTTGGTCACTCCCTAAAAGACAAGCAGATTTTCCATCCCATCTTTGT-CCTTCTAGAGA
130 GGCAAAGCTGGTCACTCCCCAAAAGACAGGCAGATTTTCCCTCCCATCTTT-TCCCTTCTAGAGA
*
97141578 TTTTGATTGCTATTTTACTAATAAGG
194 TTTTGATTGCTATTTTACTAATGAGG
* * *
97141604 GATCATAATGCCCATTTCGTCAATTGTAAAATGTGTTCATTATTTCCAATTTCTCCGTTTTAGTT
1 GATCATAATGCCCATTTCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTT
* * *
97141669 CATTCTCGTGCAGATGGCAAGAAAGTGAGTGGACATACTGCGACCCCTCCTGCTCCCAAAAAGAA
66 CATTCTGGTGCAGATGGCAAGAAAGCGA-TGGACATACTGCAACCCCTCCTGCTCCCAAAAAGAA
* * * ** *
97141734 GGCAAAGCTGGTCACTCTCGAAAAGATAGGCAGCCTTTCCTTCCCATCT
130 GGCAAAGCTGGTCACTCCCCAAAAGACAGGCAGATTTTCCCTCCCATCT
97141783 AGTGCAGATA
Statistics
Matches: 4024, Mismatches: 714, Indels: 112
0.83 0.15 0.02
Matches are distributed among these distances:
215 2 0.00
216 3 0.00
217 77 0.02
218 300 0.07
219 734 0.18
220 2253 0.56
221 638 0.16
222 17 0.00
ACGTcount: A:0.30, C:0.21, G:0.15, T:0.33
Consensus pattern (219 bp):
GATCATAATGCCCATTTCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTT
CATTCTGGTGCAGATGGCAAGAAAGCGATGGACATACTGCAACCCCTCCTGCTCCCAAAAAGAAG
GCAAAGCTGGTCACTCCCCAAAAGACAGGCAGATTTTCCCTCCCATCTTTTCCCTTCTAGAGATT
TTGATTGCTATTTTACTAATGAGG
Found at i:97137609 original size:440 final size:439
Alignment explanation
Indices: 97136769--97150004 Score: 9553
Period size: 440 Copynumber: 29.9 Consensus size: 439
97136759 GATCTTGACA
* * *
97136769 GATCATAATGCCCATTTTGTCAATTGTAAAATGTGTTCCTTACTTCTAATTTCTCCATTCTAGTT
1 GATCATAATGCCCATTTCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTT
* * * *
97136834 CATTCTTGTGCAGATGGCAAGAAAAC-AGGTGGACATACTGCAACCCTTTCTGCTCCCAAAAAGA
66 CATTCTGGTGCAGATGGCAAGAAAGCGA-GTGGACATACTGCAACCCCTCCTGCTCCCAAAAAGA
* ** * * * * * * * * *
97136898 AGGAAAACCTAGTTACTCCCCAAAAGGCAGGCAGAATTTCCCTCTCATCTTTTCCTTTTTAGAGA
130 AGGCAAAGTTGGTCACTCCCCAAAAGACAGACAGATTTTCCCTCCCATCTTTGCCCTTCTAGAGA
*
97136963 TTTTGATTGCTATTTTACTAATGAGGGATCATAATGCCCATTTCGTCAATTGTAAAATGT-ATTC
195 TTTTGATTGCTATTTTACTAATGAGGGATCATAATGCCCATTTCGTCAATTGTAAAATGTGTTTC
* * * * *
97137027 TTTACTTCAAATTTCACCGTTCTAATTCATTCTGGTGCAGATGGTAAGAAAGCGTATGGACAAAC
260 -TTACTTCCAATTTCTCCGTTCTAGTTCATTCTGGTGCAGATGGCAAGAAAGCG-ATGGACATAC
* *
97137092 TGCAACCCCTCCTACTCCCAAAAAGAAGGCAAAGCTGGTCACTCCCCAAAAGATAGGCAGATTTT
323 TGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCACTCCCCAAAAGACAGGCAGATTTT
* * * * *
97137157 CCCTCTCATCTTTACTCTTTTAGAGATTTTGATTGCTATTTTACTAATAAAT
388 CCCTCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTATTTTACTAATAAAG
* * *** ** * * *
97137209 TATTATAATGTAAATTTTATCAATTGTAAAATGTGTTCATTACTTCAAATTTCTCTGTTCTAGTT
1 GATCATAATGCCCATTTCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTT
* * * *
97137274 CATTCTGGTGCAAATGGCAAGAAAGCGGGTTGACATACTGCAACCCCTCCTACTCCCAAAAAGAA
66 CATTCTGGTGCAGATGGCAAGAAAGCGAGTGGACATACTGCAACCCCTCCTGCTCCCAAAAAGAA
* * *
97137339 GGCAAAGTTGCTCACTCCCCAAAAGACAGACAGATTTTCTCTCCCATCATTGCCCTTCTAGAGAT
131 GGCAAAGTTGGTCACTCCCCAAAAGACAGACAGATTTTCCCTCCCATCTTTGCCCTTCTAGAGAT
* *
97137404 TTTGATTGCTATTTTACTAATGATGGATCATAATGCCCATTTCGTCAATTGTAAAATTTGTTTCT
196 TTTGATTGCTATTTTACTAATGAGGGATCATAATGCCCATTTCGTCAATTGTAAAATGTGTTTCT
* * ** * **
97137469 TACTTCCAATTTCTCTGTTCTAGTTTATTCTGGTGCAGAAAGCAAGAAAGCGTATGGATATACAA
261 TACTTCCAATTTCTCCGTTCTAGTTCATTCTGGTGCAGATGGCAAGAAAGCG-ATGGACATACTG
* ** * * *
97137534 CAACCCCTCTTGCTCTAAAAAAGAAGGCAAAACTGGTCACTCCCCAAAAGATAGGTAGATTTTCC
325 CAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCACTCCCCAAAAGACAGGCAGATTTTCC
* * *
97137599 CTTCCATCTTTGCCCTTCTAGAGATTTTAATTGCTATTTTAATAAT-AAG
390 CTCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTATTTTACTAATAAAG
* *
97137648 AGATCATAATGCCCATTTCGTCAATTGTAAAATGTGTTCCTTATTTCCAATTTCTCCGTTCTAGC
1 -GATCATAATGCCCATTTCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGT
* * * * * * *
97137713 TCATTCTGGTACAGATGGCAAGTAAGAGGGTGGACAAACTGCAACCCCTCCTACTCCCCAAAAGA
65 TCATTCTGGTGCAGATGGCAAGAAAGCGAGTGGACATACTGCAACCCCTCCTGCTCCCAAAAAGA
* * * *
97137778 AGGCAAAGCTGGTCACTTCCCAAAAGACAGGCAGATTTTCCCTCCCATCTTTGCCCTACTAGAGA
130 AGGCAAAGTTGGTCACTCCCCAAAAGACAGACAGATTTTCCCTCCCATCTTTGCCCTTCTAGAGA
* * * *
97137843 -TTTGATTGCTATTTTACTAATGAGAGATCATAATACCCATTTCATCAATTGTAAAATGTGTTCC
195 TTTTGATTGCTATTTTACTAATGAGGGATCATAATGCCCATTTCGTCAATTGTAAAATGTGTTTC
* * * * * * *
97137907 TTACTTCCAATTTCTTCGATCTAGTTCATTTTGGTGCAAATAGCAAGAAATAG-GGTGGACATAT
260 TTACTTCCAATTTCTCCGTTCTAGTTCATTCTGGTGCAGATGGCAAG-AA-AGCGATGGACATAC
* ** * * * *
97137971 TGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGTTCACTCTACAAAAAATAGGTAGACTTT
323 TGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCACTCCCCAAAAGACAGGCAGATTTT
* * *
97138036 CCGTCCCATCTTT-CCCTTCTAGAGATTTTGATTGCTATTTTACAAAT-GAG
388 CCCTCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTATTTTACTAATAAAG
* * * * * * *
97138086 GAATAATAAT-CCCGTTTCGTTAATTGTAAAATATGTTCTTTACTTTCAATTTCTCTGTTCTAGT
1 G-ATCATAATGCCCATTTCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGT
* * *
97138150 TCATTCTAGTGCAGATGG-AAAAAAGCGAGTGGACATACTGTAACCCCTCCTGCTCCCAAAAAGA
65 TCATTCTGGTGCAGATGGCAAGAAAGCGAGTGGACATACTGCAACCCCTCCTGCTCCCAAAAAGA
* * * * *
97138214 AGACAAAGCTGGTCACTCCCCAAAAGACA-AGTAGATTTTCCCTCTCATCTTTGCCCCTCTAGAG
130 AGGCAAAGTTGGTCACTCCCCAAAAGACAGA-CAGATTTTCCCTCCCATCTTTGCCCTTCTAGAG
** * ** * *
97138278 ATTTTGATTATTATTTTACTAATGAGGGATCATAATACTTATTTCGTCAATTGTAAAATGTATTC
194 ATTTTGATTGCTATTTTACTAATGAGGGATCATAATGCCCATTTCGTCAATTGTAAAATGTGTTT
* * * * * *
97138343 CTTACTTCAAATATCACCGTTCTAGTTCATTCTAGTGCAGATGGTAAGAAAGCGTATAGACATAC
259 CTTACTTCCAATTTCTCCGTTCTAGTTCATTCTGGTGCAGATGGCAAGAAAGCG-ATGGACATAC
* * * * * * *
97138408 TGCAACCTCTCCTACTCCTAAAAAGAAGGAAAAGCTAGTCACTTCCCAAAAGATAGGCAGATTTT
323 TGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCACTCCCCAAAAGACAGGCAGATTTT
* * *
97138473 CCCTCCCATCTTTGCCCTTTTAGAGATTTTGATTGTTATTTTACTAATAAAA
388 CCCTCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTATTTTACTAATAAAG
* * *
97138525 GATCATAATGCCCATTTCATCAATTGTAAAATGTGTTCCTTACTTCTAATTTCTCTGTTCTAGTT
1 GATCATAATGCCCATTTCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTT
* * * * * **
97138590 CATTCTGGTGCAGATGGCAAGAAAGCGGGTGAACATACTGTAACCTCTCTTGCTCTAAAAAAGAA
66 CATTCTGGTGCAGATGGCAAGAAAGCGAGTGGACATACTGCAACCCCTCCTGCTCCCAAAAAGAA
* * * * * * *
97138655 AGCAAAGCTAGTCACTCCCTAAAAGACAGAAAGATTTTCCGTCCCATCTTTGCCCTTCTAAAGAT
131 GGCAAAGTTGGTCACTCCCCAAAAGACAGACAGATTTTCCCTCCCATCTTTGCCCTTCTAGAGAT
* * * *
97138720 TTTGATTACTATTTTACTAATAAAGGATCATAATGCCCATTTCGTCAATTGTAAAATATGTTTCT
196 TTTGATTGCTATTTTACTAATGAGGGATCATAATGCCCATTTCGTCAATTGTAAAATGTGTTTCT
* * ** ** * * * * * * *
97138785 TACTTCCAATTTCTCCATTCTAGTTTATTCTTCTATAAATGACAAAAAAGCGGGTAGACTTACTA
261 TACTTCCAATTTCTCCGTTCTAGTTCATTCTGGTGCAGATGGCAAGAAAGC-GATGGACATACTG
* * * * * * *
97138850 CAACCCCTCTTGCTCCCAAAAAGAAGGGAAAGCTAGTTACTCTCCAAAAGTCAAGCAGATTTTCC
325 CAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCACTCCCCAAAAGACAGGCAGATTTTCC
* *
97138915 CTCCCATCTTTGCCCTTTTAGAGATTTTGATTGCTATTTTACTAATAAGG
390 CTCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTATTTTACTAATAAAG
* * *
97138965 GATCATAATGCCCATTTCGTTAATTGTAAAATGTGTTTCTTACTTCCATTTTCTCCGTTCTAGTT
1 GATCATAATGCCCATTTCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTT
* * * * *
97139030 CATTTTGGTGCAGATGGCAAGAAAGTGGGTGGACATACTGCAACCCCTCCTGCTCCAAAAAAAAA
66 CATTCTGGTGCAGATGGCAAGAAAGCGAGTGGACATACTGCAACCCCTCCTGCTCCCAAAAAGAA
* * * *
97139095 GGCAAAGTTGTTCACTCCCCAAAAGATAGACAGGTTTTCCCTTCCATCTTTGCCCTTCTAGAGAT
131 GGCAAAGTTGGTCACTCCCCAAAAGACAGACAGATTTTCCCTCCCATCTTTGCCCTTCTAGAGAT
* * * *
97139160 TTTGATTACTATTTTACTAATGAGTGATCATAATGCCCATTTCGTTAATTGTAAAATGTGTTCCT
196 TTTGATTGCTATTTTACTAATGAGGGATCATAATGCCCATTTCGTCAATTGTAAAATGTGTTTCT
* * * * *
97139225 TACTTCCAATTTCACTGTTCTAATCCATTTTGGTGCAGATGGCAAGAAAGCGAGTGGACATACTG
261 TACTTCCAATTTCTCCGTTCTAGTTCATTCTGGTGCAGATGGCAAGAAAGCGA-TGGACATACTG
* * * * * *
97139290 TAACCCCTCTTGCTCCCAAAAAGAAGGCAAAGTTGGTCACT-CCTAAAAAATCAAGCAGATTTTC
325 CAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCACTCCCCAAAAGA-CAGGCAGATTTTC
** *
97139354 CCTCCCATCTTTGCTATTCTAGAGATTTTGATTACTATTTTTACTAA-AAATG
389 CCTCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTA-TTTTACTAATAAA-G
* * * * * *
97139406 GATCATAATGCCCATTTCATCTATTGTAAAATATGTTCCTTATTTCTAGTTTCTCCGTTCTAGTT
1 GATCATAATGCCCATTTCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTT
* * * * * *
97139471 TATTCTGGTGCATATGGCAAGAAAGCGGGTGGACATACTACAACCCCTCCTGCACCCATAAAGAA
66 CATTCTGGTGCAGATGGCAAGAAAGCGAGTGGACATACTGCAACCCCTCCTGCTCCCAAAAAGAA
** * * * ** * *
97139536 GGCAAAACTGGTCAGTCCCCAAAAGACA-AGCAAACTTTATCTACCATATTTGCCCTTCTAGAGA
131 GGCAAAGTTGGTCACTCCCCAAAAGACAGA-CAGATTTTCCCTCCCATCTTTGCCCTTCTAGAGA
* * ** * *
97139600 TTTTGATTACTATTTTACTAATAAGATATCATAATGCCTATTTCGTTAATTGTAAAATGTG-TTC
195 TTTTGATTGCTATTTTACTAATGAGGGATCATAATGCCCATTTCGTCAATTGTAAAATGTGTTTC
* * * **
97139664 TTTA-TATCCAATTTCTCCATTCTAGTTTATTCTGATGCAGATAACAAGAAAGCGAGTGGACATA
260 -TTACT-TCCAATTTCTCCGTTCTAGTTCATTCTGGTGCAGATGGCAAGAAAGCGA-TGGACATA
* * * * *
97139728 CTGCAACCCTTCCTACTCCTAAAAAGAAGGCAAAGCTGGTCAATCCCCAAAAGACAAGCAGATTT
322 CTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCACTCCCCAAAAGACAGGCAGATTT
* * * * * ***
97139793 TCCCTCCCATCTTTAACCCTTTTAAAGTTTTTTATTGCTATTTTACTAATGTCG
387 TCCCTCCCATCTTT-GCCCTTCTAGAGATTTTGATTGCTATTTTACTAATAAAG
97139847 GATCATAATGCCCATTTCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTT
1 GATCATAATGCCCATTTCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTT
* ** * ** *
97139912 TATT-TAGGAACAGATAGCAAGAAA-TTAGGTGGACATATTGCAACCCCTCCTGCTCCCAAAAAG
66 CATTCT-GGTGCAGATGGCAAGAAAGCGA-GTGGACATACTGCAACCCCTCCTGCTCCCAAAAAG
* * * * *
97139975 AAGGCAAAGTTGGTCACTCCTCAAAAGACA-AGTAGATTTTCCATTCCATCTTTGTCCTTCTAGA
129 AAGGCAAAGTTGGTCACTCCCCAAAAGACAGA-CAGATTTTCCCTCCCATCTTTGCCCTTCTAGA
* * *
97140039 GATTTTGATTGCTATTTTACTAATAAGGGATCATAATGCCGATTTTGTCAATTGTAAAATGTGTT
193 GATTTTGATTGCTATTTTACTAATGAGGGATCATAATGCCCATTTCGTCAATTGTAAAATGTGTT
* * * * *
97140104 CCTTATTTTCAATTTCTCCGTTTTAGTTCATTCTGGTGCAGATGGCAAGAAAGTGAGTGGACATA
258 TCTTACTTCCAATTTCTCCGTTCTAGTTCATTCTGGTGCAGATGGCAAGAAAGCGA-TGGACATA
* * * * *
97140169 CTACAACCCCTTCTGCTCCCAAAAAGAAGGCAAAGCTGGTCATTCCCGAAAAGACAAGCAGCA-T
322 CTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCACTCCCCAAAAGACAGGCAG-ATT
* * * * *
97140233 TTCCTTCCCATATTT-TCCTTCTAGAGATTTTTATTGCTATTTTACTAAT-GAG
386 TTCCCTCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTATTTTACTAATAAAG
*** * * ** ***
97140285 GAATCATAATGCTTGTTTCGTTAATTGTAAAATATGTT-CTGTACTTTTAATTTCTATATTCTAG
1 G-ATCATAATGCCCATTTCGTCAATTGTAAAATGTGTTCCT-TACTTCCAATTTCTCCGTTCTAG
* * * * * * * * *
97140349 TTTATTCTGGTGCAGATGACAAAAAAGCAAGTGGACATACTACAATCCCTCATACTCTCAAAAAG
64 TTCATTCTGGTGCAGATGGCAAGAAAGCGAGTGGACATACTGCAACCCCTCCTGCTCCCAAAAAG
* * * * *
97140414 AAGGCAAATTTGGTCACTCCTCAAAAGACA-AGCAGATTTTCCAT-CAATCTTTGTCCTTCTAGA
129 AAGGCAAAGTTGGTCACTCCCCAAAAGACAGA-CAGATTTTCCCTCCCATCTTTGCCCTTCTAGA
* * *
97140477 GATTTTGATTGTTATTTTACTAATAAGGGATCATAATGCCCATTTCGTCAATTGTAAAATTTGTT
193 GATTTTGATTGCTATTTTACTAATGAGGGATCATAATGCCCATTTCGTCAATTGTAAAATGTGTT
* * * * * * *
97140542 CCTTATTTTCAATTTCTCCTTTTTAGTTCATTCTGATGCAGATGGTAAGAAAGCGAGTGGACATA
258 TCTTACTTCCAATTTCTCCGTTCTAGTTCATTCTGGTGCAGATGGCAAGAAAGCGA-TGGACATA
* * * **
97140607 CTGCAACCTCTCCTGCTCCCAAAAA-AAAGCAAAGCTGGTCACTCCCAAAAAGACAGGCAGCCTT
322 CTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCACTCCCCAAAAGACAGGCAGATTT
** * * *
97140671 TCATTCCCATCCTT-CCCTTCTAGAGATTTTGATTGCTATTTTACTAATGAGG
387 TCCCTCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTATTTTACTAATAAAG
** * * * ** **
97140723 GATCATAATGCCTGTTTTGTTAATTGTAAAATATGTT-CTGTACTTTTAATTTCTCTATTCTAGT
1 GATCATAATGCCCATTTCGTCAATTGTAAAATGTGTTCCT-TACTTCCAATTTCTCCGTTCTAGT
* * ** * * * * *
97140787 TCATTCTGGTGCAGATGGAAAAAAAATGAGTAGATATACTACAACCTCTCATGCTCCCAAAAAGA
65 TCATTCTGGTGCAGATGGCAAGAAAGCGAGTGGACATACTGCAACCCCTCCTGCTCCCAAAAAGA
* * * * * * *
97140852 AGGCAAAGCTCGTCAATCCCTAAAA-ATTA-AGCAGATTTTCCCTCCCATCTTTACCATTCTAGA
130 AGGCAAAGTTGGTCACTCCCCAAAAGA-CAGA-CAGATTTTCCCTCCCATCTTTGCCCTTCTAGA
** * * *
97140915 GATTTTGATTGCTATTTTTACTAAAAATGGATCATAATGCCCATTTCGTCTATTGTAAAATATGT
193 GATTTTGATTGCTA-TTTTACTAATGAGGGATCATAATGCCCATTTCGTCAATTGTAAAATGTGT
* * * * * *
97140980 TCCTTATTTCCAATTTCTTCGTTTTAGTTCATTCTGGTGCATATGGCAAGAAAGCGGGTGGACAT
257 TTCTTACTTCCAATTTCTCCGTTCTAGTTCATTCTGGTGCAGATGGCAAGAAAGC-GATGGACAT
* * * * *
97141045 TCTACAACCCCTCCTGCACCCAAAAAGAAGGCAAAACTAGTCACTCCCCAAAAGACAGGCA-AGT
321 ACTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCACTCCCCAAAAGACAGGCAGA-T
** * *
97141109 TTTATCTACCATCTTTGCCCTTCTAGAGATTTTGATTACTATTTTACTAAT-AAG
385 TTTCCCTCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTATTTTACTAATAAAG
* * * * * * * *
97141163 AGATCATAATGCCTATTTCGTTAATTGTAAAATATGTTCTTTACATCCAAATTCTCCATTCTAAT
1 -GATCATAATGCCCATTTCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGT
* ** * * * * *
97141228 TTATTCTGGTGCAGATAACAAGAAAGTGAGTGGACATACTACAACACCTCATACTCCCAAAAAGA
65 TCATTCTGGTGCAGATGGCAAGAAAGCGAGTGGACATACTGCAACCCCTCCTGCTCCCAAAAAGA
* * * * * * * *
97141293 AGGCAAAGCTAGTTACTCTCCAAAAG-CAAGGCAGATTTTCCCTCCCATTTTTAACCCTTTTAGA
130 AGGCAAAGTTGGTCACTCCCCAAAAGAC-AGACAGATTTTCCCTCCCATCTTT-GCCCTTCTAGA
*
97141357 G-TGTTTGATTGCTATTTTACTAATGTGGGATCATAATGCCCATTTCGTCAATTGTAAAATGTG-
193 GAT-TTTGATTGCTATTTTACTAATGAGGGATCATAATGCCCATTTCGTCAATTGTAAAATGTGT
* * * ** * * *
97141420 TTCTTTACTTCCAATTTCTCCATTCTAGTTTATTCTAG-AAAGATAGCAAGAAATCAGGTGGACA
257 TTC-TTACTTCCAATTTCTCCGTTCTAGTTCATTCTGGTGCAGATGGCAAGAAAGC-GATGGACA
* * * * *
97141484 TATTGCAACCCCTCCTGCTCCCAAAAAGAAGGTAAAGTTGGTCACTCCCTAAAAGACAAGCAGAT
320 TACTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCACTCCCCAAAAGACAGGCAGAT
* * *
97141549 TTTCCATCCCATCTTTGTCCTTCTAGAGATTTTGATTGCTATTTTACTAATAAGG
385 TTTCCCTCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTATTTTACTAATAAAG
* * *
97141604 GATCATAATGCCCATTTCGTCAATTGTAAAATGTGTTCATTATTTCCAATTTCTCCGTTTTAGTT
1 GATCATAATGCCCATTTCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTT
* * *
97141669 CATTCTCGTGCAGATGGCAAGAAAGTGAGTGGACATACTGCGACCCCTCCTGCTCCCAAAAAGAA
66 CATTCTGGTGCAGATGGCAAGAAAGCGAGTGGACATACTGCAACCCCTCCTGCTCCCAAAAAGAA
* * * * * ** * * **
97141734 GGCAAAGCTGGTCACTCTCGAAAAGATAGGCAGCCTTTCCTTCCCATCTAGTGCAGATAGAAAAA
131 GGCAAAGTTGGTCACTCCCCAAAAGACAGACAGATTTTCCCTCCCATCT-TTGC-CCT-------
* * * *** * ** ** * ** * *
97141799 AATCAGTAGACATACTGTAACCCCTCCTGCT-CTCAAAAAGAAGA-CA-AAGCTGGTCACTTC-C
187 --TC--TAGAGAT--TTTGATTGCT-ATTTTACT-AATGAG-GGATCATAA--TGCCCATTTCGT
** * * * * * * ** *** * **
97141860 CAAAAG--ACAGGAAGATT-TTCCCTCTC-ATCTT-TGCCCCTCTAGAGAATT-TGATTGCTATT
241 CAATTGTAAAATG-TGTTTCTTACTTC-CAAT-TTCT-CCGTTCTAGTTCATTCTG-GTGC-AGA
** * * * *** * * * * ***
97141919 TTACTAA-TAAGGGAT---CATAATGC--CTATTTC-G-T--CAATTGTAA-AATGTATTTCT--
300 TGGC-AAGAAAGCGATGGACATACTGCAACCCCTCCTGCTCCCAA---AAAGAAGGCAAAGCTGG
* ** * * * ** ** ** ** * * *
97141971 T-ACT--TCAAATTTCACTGTTCTAGTTTATTCTGGTGCAGATGGC-AAGAAAGCGTATAAACG-
361 TCACTCCCCAAA--AGACAG-GC-AGATT-TTC-CCT-CCCAT--CTTTG--CCCTTCTAGA-GA
** ** ** *
97142031 TACTGCA-ACCCCTTCTACTCCCAA-AAAG
414 TTTTG-ATTGCTATTTTACT---AATAAAG
* * * ** ** * *
97142059 AAGGT-A-AAGCTGGCCA-CTCCCCAAAAG-AAAGGCA-GATTTTCC-CAC--CC-ATCTT-TGC
1 --GATCATAA--TGCCCATTTCGTCAATTGTAAA---ATG-TGTTCCTTACTTCCAAT-TTCT-C
* * ** * * ** ** * * *
97142114 CTTTTTAG-AGATTTTGATTGCCATTTTACTAATAAAG-GA-T---CATAATG---CCCAT--T-
56 CGTTCTAGTTCATTCTG-GTG-CAGATGGC-AAGAAAGCGAGTGGACATACTGCAACCCCTCCTG
* ** * * ** * *** * * * *
97142167 -TCATC-AATTGTA---AAA-TGTGTTC-CTTACTTCTAATTTC--TC-CATTCTT--GT-TCAT
118 CTC-CCAAAAAGAAGGCAAAGT-TGGTCAC-T-CCCCAAAAGACAGACAGATT-TTCCCTCCCA-
* ** * * *** * * * * * *
97142219 TCTGGTGCAGATGGCAAGAAAGGGGGTGGACAACTGCAACCCCTTTTGCTCCCAAAAAGAAGGA-
177 TCT-TTGC-CCT-TCTAG--A-GATTTTG---ATTGCTA----TTTTACT-----AATGAGGGAT
* * * * ** * * *
97142283 -A-AA-GCTAGTCACTCCCT-AAAAGATAGAAA-GAT-TTTC---CCTCCTATCTT-TACCTTTC
224 CATAATGC---CCATTTCGTCAATTG-TA-AAATG-TGTTTCTTACTTCCAAT-TTCT-CCGTTC
* ** * * * * * * *
97142338 TAAAGATTTTGATTACTATTTTACTA-ATAAGG-AATCATAATGCCCATTTCGTCA-ATTGTAAA
281 T--AG---TTCATT-C--TGGTGC-AGAT--GGCAA-GA-AA-G-CGA--TGGACATACTG--CA
**** * * *** * * ** * ** * *
97142400 ATATGTTCCTTACTTCCAATTTCTCCGTTCTAGTTC-ATTCTGGTGTTA-T-AACAAAAAAGCGG
327 A-CCCCTCC-TGCTCCCAA----AAAG---AAG-GCAAAGCT-G-GTCACTCCCCAAAAGA-CAG
* ** * ** * * * ** ** *** *
97142462 GTAGACCTACTACAACCCCTC-TTGCTCC--CAAAAAGA--AGGCAAAGCTAGTCACACT-CTAA
379 GCAGA--TTTTCCCTCCCATCTTTGC-CCTTC-TAGAGATTTTG-ATTGCTA-TTTTACTAATAA
*
97142521 AA
438 AG
* * * ** * * * * * *
97142523 GA-CAAGCAGATTTTCCC-TCCTATCTTTGCCCTTTTAGAGATTTTGATTGC-TATTTTACTAA-
1 GATC-A-TA-A--TGCCCAT--T-TC-GT-CAATTGTA-A-AATGTG-TTCCTTA-CTT-CCAAT
**** * * * * * * * * ** * * ****
97142584 -TAAGGGATCATAGTGCCCATT-TCGT-TA-ATTG-TA-AAA-TGTGT-TTCTTACTTCTATTTT
51 TTCTCCGTTC-TAGT--TCATTCTGGTGCAGATGGCAAGAAAGCGAGTGGACATACTGC-AACCC
* * ** ** * ** * * * * *
97142641 CTCCT--T-TC---TAG--TTC-ATTTTGGTACAGATGGCAAGAAAGTGAGCGGACATA-CTGCA
112 CTCCTGCTCCCAAAAAGAAGGCAAAGTTGGT-CA-CTCCCCA-AAA--GA-CAGACAGATTTTC-
* * *** * ** ** * * * *
97142696 AC-CGC-TC-TTGCTCC-AAAAAAGA--AGGCAAAGCT-GTTCACTCCCCAA-AAGCTAGA-CAG
170 CCTCCCATCTTTGC-CCTTCTAGAGATTTTG-ATTGCTATTTTACT----AATGAG--GGATCA-
** * * ** * * ** *
97142752 GTTTTCCCTCCCATCTTTG-CCCTTCTAGAGAT-T-TTAATTAC-T---ATTT-TAC-TAAT-TA
226 -TAAT---GCCCAT-TTCGTCAATTGTA-AAATGTGTTTCTTACTTCCAATTTCTCCGT--TCTA
* ** ** ** ** ** * * ***
97142807 G-TGA-TCATAATGCCCATTTCATTAATTGTAAA-ATATGTTCCTGACTTCCAATTTCT-CTG-T
283 GTTCATTC-TGGTGCAGATGGC---AA--G-AAAGCGATGGACAT-AC-TGCAACCCCTCCTGCT
* * * * ** * ** * * * ** * ** *
97142867 -TC------TAGTCCATTCTGATGT-AGATGACAAGAAAG-CGAGTGGACATACTGCAACCCCTC
339 CCCAAAAAGAAGGCAAAGCTG--GTCA-CTCCCCA-AAAGAC-AG-GCAGATTTTCCCTCCCATC
* * * * ** * * *
97142923 -CTGCTCC--CAAAAAGA--ATGCAAAGCTA-GTCACTCCCGAAAAGAAAG
398 TTTGC-CCTTC-TAGAGATTTTG-ATTGCTATTTTACT------AATAAAG
* * * * * * * * * *
97142968 GTAGCCT-TTCCTTTCCATCTTTCCCTTCCAGAGATGTTAATTGCTATT--TTAC-T--AA--TG
1 G-ATCATAATGC---CCA--TTT--CGT-CA-A-TTGTAAAATG-TGTTCCTTACTTCCAATTTC
*** * * * * * * *** * ** * *
97143025 AAGGATCATAATGCATGTTTCGT-TA-ATTTTAA-AATACGTTCTGTACTTTTAATTTCTCTATT
54 TCCGTTC-TAGTTCAT-TCTGGTGCAGATGGCAAGAA-A-G--C-G-A--GTGGA---C-ATACT
* * ** ** * * * * * **
97143087 GTAGTTCATTCTGGTGCAGATGGCAAAAAAGCGAGTGGACATACTATAACCCCTC-CTGCTCCCA
105 GCA--AC-CCCTCCTGC---T-CCCAAAAA--GA-AGG-CAAAGT-T----GGTCACT-C-CCC-
* * *
97143151 AAAAGAAGGCAAAGCTGGTCACTCCTCAAAAATCAAACAGATTTTCCCTCCCTTCTTTGACATTC
151 AAAAG-A--C--A----G------------------ACAGATTTTCCCTCCCATCTTTGCCCTTC
* * *
97143216 TAGAGATTTTTATTGCTATTTTTACTAATGATGAATCATAATGCCCATTTCGTCAATTGTAAAAT
189 TAGAGATTTTGATTGCTA-TTTTACTAATGAGGGATCATAATGCCCATTTCGTCAATTGTAAAAT
* * * * * * * *
97143281 ATGTTTCTTATTTCCAATTTCTCCGTTCTAGTTTATTCTGGTGCATATGGTAAAAAAGTGGGTGG
253 GTGTTTCTTACTTCCAATTTCTCCGTTCTAGTTCATTCTGGTGCAGATGGCAAGAAAG-CGATGG
* * * * *
97143346 ACATACTACAATCCCTCTTTCACCCAAAAAGAAGGCAAAGCTGGTCACTCCCCAAAAGACAGGCA
317 ACATACTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCACTCCCCAAAAGACAGGCA
* * * * * *
97143411 GGTTTTCTCTACCATCTTTACCCTTCTAAAGATTTTGATTGCTATTTTACTAAT-GAG
382 GATTTTCCCTCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTATTTTACTAATAAAG
* * *
97143468 ATATCATAATGCCCATTTCGAT-AATTGTAAAATGTGTTCCTTACATCCAATTTCTCCATTCTAG
1 -GATCATAATGCCCATTTCG-TCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAG
* * * * * * * * *
97143532 TTTATTCTGCG-ACAGATAGCACGAAAGTGAGTGGATATACTGTAACCCATCCTGTTCCCAAAAA
64 TTCATTCTG-GTGCAGATGGCAAGAAAGCGAGTGGACATACTGCAACCCCTCCTGCTCCCAAAAA
* * * * * * * * * * *
97143596 GAATGCAAAGCTGGTTACTCCCTAAAAAAATAGGCAGATTTTCTCTCCTATCTTTAACCCTTTTA
128 GAAGGCAAAGTTGGTCACTCCC-CAAAAGACAGACAGATTTTCCCTCCCATCTTT-GCCCTTCTA
** *
97143661 GACCTTTTGATTGCTATTTTACTAATGTGGGATCATAA-GTCCCATTTCGTCAATTGTAAAATGT
191 GAGATTTTGATTGCTATTTTACTAATGAGGGATCATAATG-CCCATTTCGTCAATTGTAAAATGT
* * ** * * *
97143725 GTTCCTTACTTCCAATTTCTCCGTTCTAGTTCATTTTGGAACAGATAGCAAGAAATCGAGTGGAT
255 GTTTCTTACTTCCAATTTCTCCGTTCTAGTTCATTCTGGTGCAGATGGCAAGAAAGCGA-TGGAC
* * * *
97143790 ATATTGTAACCCCTTCTGCTCCCAAAAAGAAGGCAAAGCTGGTCAC-CCCCAAAAGACAGACAGA
319 ATACTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCACTCCCCAAAAGACAGGCAGA
* * **
97143854 TTTTCCATCCCATCATTATCCTTCTAGAGATTTTGATTGCTATTTTACTAAT-AAG
384 TTTTCCCTCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTATTTTACTAATAAAG
*
97143909 AGATCATAATGCCCATTTCGTCAATTGTAAAATGTGTTCCTTATTTCCAATTTCTCCGTGT-TAG
1 -GATCATAATGCCCATTTCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGT-TCTAG
* * * *
97143973 TTCATTCTGTTGCAGATGGCAAGAAAGCAAGTGGACGTACTGCAACCCCTCCTGCTTCCAAAAAG
64 TTCATTCTGGTGCAGATGGCAAGAAAGCGAGTGGACATACTGCAACCCCTCCTGCTCCCAAAAAG
* * * * ** * *
97144038 AAGGCAAAGCTGGTTACTCCCAAAAAGACAGGCAGCCTTTCCTTTCCATCTTT-CCCTTCTAGAG
129 AAGGCAAAGTTGGTCACTCCCCAAAAGACAGACAGATTTTCCCTCCCATCTTTGCCCTTCTAGAG
* * * * * *
97144102 ATATTGATTGCTAGTTTACTAATGAGAGATCATAATGCCTATTTCGTTAATTGTAAAATATG-TT
194 ATTTTGATTGCTATTTTACTAATGAGGGATCATAATGCCCATTTCGTCAATTGTAAAATGTGTTT
** ** * * *
97144166 CTATACTTTTAATTTCTCTATTTTAGTTCATTCTGGTGCAGATGGCAAAAAAGCGAGTGAACATA
259 CT-TACTTCCAATTTCTCCGTTCTAGTTCATTCTGGTGCAGATGGCAAGAAAGCGA-TGGACATA
** * * *
97144231 CTAAAACCCCTCCTACCCCCAAAAAGAAGGCAAAGCTGGTCACTCCCCAAAA-ATCAAGCAGATT
322 CTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCACTCCCCAAAAGA-CAGGCAGATT
* * *
97144295 TTCCCTTCCATCTTTGCCATTCTAGAGATTTTGATTGCTATTTTTACTAAT-GAG
386 TTCCCTCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTA-TTTTACTAATAAAG
* * *
97144349 ATATCATAATGCCAATTTCGTCAATTTTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGT
1 -GATCATAATGCCCATTTCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGT
* * * ** * *
97144414 TTATTCTGGTGCATG-TAGCAAGAAAGTG-GTTGGACATACTTTAACCCCTCCTACTCTCAAAAA
65 TCATTCTGGTGCA-GATGGCAAGAAAGCGAG-TGGACATACTGCAACCCCTCCTGCTCCCAAAAA
* * *** * * **
97144477 GAAGGCAAAGCTAGTCACTTTTCAAAAGATA-AGCAAATTTTTTCTCCCATCTTTGCCCTTCTAG
128 GAAGGCAAAGTTGGTCACTCCCCAAAAGACAGA-CAGATTTTCCCTCCCATCTTTGCCCTTCTAG
* * *
97144541 AGATTTTGATTGCTATTTTACTAATAAGGGATCATAAGGCCCATTTCGTTAATTGTAAAATGTGT
192 AGATTTTGATTGCTATTTTACTAATGAGGGATCATAATGCCCATTTCGTCAATTGTAAAATGTGT
* * * * ** * *
97144606 TTCTTACTTCTATTTTCTCCGTTCTAGTTTATTTTAATGCAGATGGCAAGAAAGTGGTGGACATA
257 TTCTTACTTCCAATTTCTCCGTTCTAGTTCATTCTGGTGCAGATGGCAAGAAAGCGATGGACATA
* * * * * *
97144671 ATACAACCCCTCCTGCTCCGAAAAAGAAGGCAAAGCTGTTCACTCCCCAAAAGATAGGCAGGTTT
322 CTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCACTCCCCAAAAGACAGGCAGATTT
* **
97144736 TCCCTCCCATCTTTGCCCTTCTAGAGATTTTGATTACTATTTTACTAAT-GGG
387 TCCCTCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTATTTTACTAATAAAG
* * * *
97144788 TGATCATAATGCCCATTTCGTTAATTATAAAATGTGTTCCTTACTTCCAATTTCTCTGTTCTAAT
1 -GATCATAATGCCCATTTCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGT
* * *
97144853 TCATTCTGGTGCAGATGGCAAGAAAACGAGTGGACATACTGTAACCCCTCTTGCTCCCAAAAAGA
65 TCATTCTGGTGCAGATGGCAAGAAAGCGAGTGGACATACTGCAACCCCTCCTGCTCCCAAAAAGA
* * * * *
97144918 AGGCAAAGTTGCTCATTCCCCGAAAA-TCA-AGCAGTTTTTCCCTCCCATCTTTGCCATTCTAGA
130 AGGCAAAGTTGGTCACTCCCC-AAAAGACAGA-CAGATTTTCCCTCCCATCTTTGCCCTTCTAGA
* * * * *
97144981 GATTTTGATTGCTATTTTTACTAATGATGAATTATAATGCCTATTTCGTCAATTGTAAAATATG-
193 GATTTTGATTGCTA-TTTTACTAATGAGGGATCATAATGCCCATTTCGTCAATTGTAAAATGTGT
* * * *
97145045 TTCTTTATTTCCAATTTCTCCGTTCTAGTTTATTCTGGTGCATATGGCAAGAAAGCGGTTGGACA
257 TTC-TTACTTCCAATTTCTCCGTTCTAGTTCATTCTGGTGCAGATGGCAAGAAAGC-GATGGACA
* * * * *
97145110 TACTACAACCCTTCCTGCACCCAAAAAGAAGGCAAAGCTGGTCACTCCCCAAAAGACATGCAGGT
320 TACTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCACTCCCCAAAAGACAGGCAGAT
* * * * * *
97145175 TTTCTCTACCATTTTTACCCTTCTATAGATTTTGATTGCTATTTTACTAAT-GAG
385 TTTCCCTCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTATTTTACTAATAAAG
* * *
97145229 AGATCATAATGCCCATTTCGTTAATTGTAAAATGTGTTCCTTACATCCAATTTCTCCATTCTAGT
1 -GATCATAATGCCCATTTCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGT
* * ** * *
97145294 TTATTCTGATGCAGATAACAAGAAAGCGAGTGGACATACTGCAACCCATCCTACTCCCAAAAAGA
65 TCATTCTGGTGCAGATGGCAAGAAAGCGAGTGGACATACTGCAACCCCTCCTGCTCCCAAAAAGA
* * * * * *
97145359 AGGCAAAGCTAGTCACTTCCCAAAAGACAAGTA-A-ATTTTCCCTCTCATCTTTAACCCTTTTAG
130 AGGCAAAGTTGGTCACTCCCCAAAAGAC-AG-ACAGATTTTCCCTCCCATCTTT-GCCCTTCTAG
* * * * *
97145422 AGTTTTTGATTGCTATTTTACTAATGTGGGATAATAATTCCCATTTCGTCAATTGTAAAATGCGT
192 AGATTTTGATTGCTATTTTACTAATGAGGGATCATAATGCCCATTTCGTCAATTGTAAAATGTGT
* * * *** * * * *
97145487 TCCTTACTTCCAATTTCTCCGTTCTAATTTATTCTGGAATAGATAGCAAGAAATCAGGTAGACAT
257 TTCTTACTTCCAATTTCTCCGTTCTAGTTCATTCTGGTGCAGATGGCAAGAAAGC-GATGGACAT
* * ** * *
97145552 ATTGCAACCCCTCCTACTCTAAAAAAGAAGGCAAAGCTGGTCACTCCCCAAAAAACAGACAGATT
321 ACTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCACTCCCCAAAAGACAGGCAGATT
* * * *
97145617 TTCCATCCCATCTTTGTCCTTCTAGAGATTTTGATTGCTATTTTACTAATGAGG
386 TTCCCTCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTATTTTACTAATAAAG
* * *
97145671 GATCATAATGCCCATTTCAGT-AATTGTAAAATATGTTCCTTATTTCCAATTTCTCCGTTTTAGT
1 GATCATAATGCCCATTTC-GTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGT
* *
97145735 TCATTCTGGTGCAGATGGTAAGAAAGCGAGTGGACATACTTCAA-CCCTCCTGCTCCCAAAAAGA
65 TCATTCTGGTGCAGATGGCAAGAAAGCGAGTGGACATACTGCAACCCCTCCTGCTCCCAAAAAGA
* * * ** *
97145799 AGGCAAAGCTGGTCACTCCCGAAAAGACAGGCAGCCTTTCCTTCCCATCTTT-CCCTTCTAGAGA
130 AGGCAAAGTTGGTCACTCCCCAAAAGACAGACAGATTTTCCCTCCCATCTTTGCCCTTCTAGAGA
* * ** * * * *
97145863 TTTTAATTGCTATTTTACTAATAAGGGATCATAATGCCTGTTTTGTTAATTATAAAATATG-TTC
195 TTTTGATTGCTATTTTACTAATGAGGGATCATAATGCCCATTTCGTCAATTGTAAAATGTGTTTC
** *** ** * *
97145927 TGTACTTTTAATTTCTGTATTCTAGTTCATTCTGGTGCAGATGATTAAAAAAGCAAGTGGACATA
260 T-TACTTCCAATTTCTCCGTTCTAGTTCATTCTGGTGCAGATG-GCAAGAAAGCGA-TGGACATA
* * * * * *
97145992 CTGCAATCCCTCCTGCTCCAAAAAAGAAGGCAAAGTTAGTTACTCCCCAAAA-ATCAAGCAGATT
322 CTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCACTCCCCAAAAGA-CAGGCAGATT
* *
97146056 TTCCCTCCCATCTTTGCCATTCTAGAGATTTTGATTGCTATTTTTACTAAT-GAG
386 TTCCCTCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTA-TTTTACTAATAAAG
*
97146110 AGATCATAATGCCCATTTCGTCAATTGTAAAATGTGTTCCTTAATTCCAATTTCTCCGTTCTAGT
1 -GATCATAATGCCCATTTCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGT
* * * * *
97146175 TTATTCTGGTGCATATGGCAAGAAAGAGGGTGGACATACTGCAACCCCTCCTACTCCCAAAAAGA
65 TCATTCTGGTGCAGATGGCAAGAAAGCGAGTGGACATACTGCAACCCCTCCTGCTCCCAAAAAGA
* * * *
97146240 AGGCAAAGCTAGTTACTCTCCAAAAGACA-AGCAGATTTTCCCTCCCATCTTTGCCCTTCTAGAG
130 AGGCAAAGTTGGTCACTCCCCAAAAGACAGA-CAGATTTTCCCTCCCATCTTTGCCCTTCTAGAG
* * *
97146304 ACTTTGATTGCTATTTTACTAATAAGGGATCATAATGCCCATTTCGTTAATTGTAAAATGTGTTT
194 ATTTTGATTGCTATTTTACTAATGAGGGATCATAATGCCCATTTCGTCAATTGTAAAATGTGTTT
* * * * * *
97146369 CTTACTTCCATTTTCTCCGTTCTAGTTTATTTTGGTGCAGATGGCAAGAAAGTGGGTGGATATAC
259 CTTACTTCCAATTTCTCCGTTCTAGTTCATTCTGGTGCAGATGGCAAGAAAG-CGATGGACATAC
* * * *
97146434 TGCAACCCCTCCTGCTCCCAAAAAGAAAGCAAAGCTGTTCACTCTCCAAAAGACAGGCAGGTTTT
323 TGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCACTCCCCAAAAGACAGGCAGATTTT
* * * * *
97146499 CCCTTCCATCTTTGCCCTTCTAAAGATTTTGTTTACTATTTTACTAAT-GAG
388 CCCTCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTATTTTACTAATAAAG
* * * * *
97146550 TGATCTTAATGCCCATTTCGTTAATTGTAAAATGTGTTCATTACTTCCAATTTCTCTGTTCTAAT
1 -GATCATAATGCCCATTTCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGT
* * * * * * * * **
97146615 CCATTTTGCTCCAGATGGCAAGCAAGTGAGTGGAAATATTGCAACCCCTATTGCTCCCAAAAAGA
65 TCATTCTGGTGCAGATGGCAAGAAAGCGAGTGGACATACTGCAACCCCTCCTGCTCCCAAAAAGA
* * * *
97146680 AGGAAAAGTTGGTCACTCCCCAAAA-ATCA-AGCAAATTTTCCCTCCCATCTTTTCCATTCTAGA
130 AGGCAAAGTTGGTCACTCCCCAAAAGA-CAGA-CAGATTTTCCCTCCCATCTTTGCCCTTCTAGA
* * *
97146743 GATTTTGATTGCCATTTTTACTAATGATGGATCATAACGCCCATTTCGTCAATTGTAAAATGTGT
193 GATTTTGATTGCTA-TTTTACTAATGAGGGATCATAATGCCCATTTCGTCAATTGTAAAATGTGT
* * * * *
97146808 TTCTTATTTCCAATTTCTCCGTTCTAGTTCATTCTGGTGTATATGGTAAGAAAGCGGGTGGACAT
257 TTCTTACTTCCAATTTCTCCGTTCTAGTTCATTCTGGTGCAGATGGCAAGAAAGC-GATGGACAT
* * * *
97146873 ACTACAACCCCT-TTGCTCCCAAAAAGAAGGCAAAGCTGGTCACTCCCCAAAAGACATGCAGGTT
321 ACTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCACTCCCCAAAAGACAGGCAGATT
* * * *
97146937 TTCTCTACCATCTTTGCCCTTCTAGAGATTTTGATTACAATTTTACTAAT-AAG
386 TTCCCTCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTATTTTACTAATAAAG
* * * * * *
97146990 ATATCATATTGCCTATTTCGTTAATTGTAAAATGTGTTCCTTACATCCAATTTCTCCATTCTAGT
1 -GATCATAATGCCCATTTCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGT
* * * * * *
97147055 TTATTCTGATGCAGATAGCAAGAAACCGAGTGGAAATACTGCAACCCCTCCTACTCCCAAAAAGA
65 TCATTCTGGTGCAGATGGCAAGAAAGCGAGTGGACATACTGCAACCCCTCCTGCTCCCAAAAAGA
* * *
97147120 AGGCAAAGCTGGTCACTCCCCAAAAGACAGGA-AGATTTTCCCTCCCATCTTTAACCCTTTTAGA
130 AGGCAAAGTTGGTCACTCCCCAAAAGACA-GACAGATTTTCCCTCCCATCTTT-GCCCTTCTAGA
* * * * *
97147184 GCTTTTAATTGCTATTTTACTAATGTGGGATCATAATACCTATTTCGTCAATTGTAAAATGTGTT
193 GATTTTGATTGCTATTTTACTAATGAGGGATCATAATGCCCATTTCGTCAATTGTAAAATGTGTT
* * *** * * * * *
97147249 CCTTACTTCCAATTTCTCCATTCTAGTTCATTCTGGAATAGATAGCAAGAAATCAGGTAGAAATA
258 TCTTACTTCCAATTTCTCCGTTCTAGTTCATTCTGGTGCAGATGGCAAGAAAGC-GATGGACATA
* * * *
97147314 TTGCAGCCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCACTCCCCAAAAGATAGACAGATTT
322 CTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCACTCCCCAAAAGACAGGCAGATTT
* * * *
97147379 TTCATCCCATCTTTGTCCTTCTAGAGATTTTGATTGCTATTTTACTAATAAGG
387 TCCCTCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTATTTTACTAATAAAG
* * *
97147432 GATCATAATGCCCATTTCGTCAATTGTAAAATGTGTTTCTTATTTCCAATTTCTCCGTTTTAGTT
1 GATCATAATGCCCATTTCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTT
* *
97147497 CACTCTGGTGCAGATGGTAAGAAAGCGAGTGGACATACTGCAACCCCTCCTGCTCCCAAAAAGAA
66 CATTCTGGTGCAGATGGCAAGAAAGCGAGTGGACATACTGCAACCCCTCCTGCTCCCAAAAAGAA
* * * ** ** *
97147562 GGCAAAGCTGGTCACTCCCGAAAAGACAGGCAGCCTTTCATTCCCATCTTT-CCCTT-TATAGAT
131 GGCAAAGTTGGTCACTCCCCAAAAGACAGACAGATTTTCCCTCCCATCTTTGCCCTTCTAGAGAT
** * **
97147625 TTTGATTGCTATTTTACTAATGAGGGATCATAATATCTATTTCG-CTAATTGTAAAACATG-TTC
196 TTTGATTGCTATTTTACTAATGAGGGATCATAATGCCCATTTCGTC-AATTGTAAAATGTGTTTC
* ** ** * * *
97147688 TGCACTTTTAATTTCTCTATTCTAGTTCATTCTGGTACAGATGGCAAAAAAGTGAGTGGACATAC
260 T-TACTTCCAATTTCTCCGTTCTAGTTCATTCTGGTGCAGATGGCAAGAAAGCGA-TGGACATAC
* * * * *
97147753 TACAACCTCTCCTGCTCCCAAAAAGAAGGCAAATCTGGTCACTCCCCAAAA-TCAAGCAGATTTT
323 TGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCACTCCCCAAAAGACAGGCAGATTTT
* * * *
97147817 CCCTCCTATCTTTGCCATTCTAGAGATTTTGATTGCTATTTTTACTAATTAGG
388 CCCTCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTA-TTTTACTAATAAAG
*
97147870 GATCATAATGCCCATTTCGTCAATTGTAAAATGTGTTCCTTACTTCTAATTTCTCCGTTCTAGTT
1 GATCATAATGCCCATTTCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTT
* ** * *
97147935 CATTCTGGTGCATATGGCAAGAAAGCTG-GAAGACATACTACAACCCCTCCTACTCCCAAAAAGA
66 CATTCTGGTGCAGATGGCAAGAAAGC-GAGTGGACATACTGCAACCCCTCCTGCTCCCAAAAAGA
* * * * *
97147999 AGGCAAAGCTGGTCACTCCCCAAAAGACAAGTA-AG-TTTTCTCTACCATCTTTGTCATTCTAGA
130 AGGCAAAGTTGGTCACTCCCCAAAAGAC-AG-ACAGATTTTCCCTCCCATCTTTGCCCTTCTAGA
* * *
97148062 GATTTTGATTGCTATTTTACTAATGAGAGATCATAATACCCATTTCGTTAATTGTAAAATGTGTT
193 GATTTTGATTGCTATTTTACTAATGAGGGATCATAATGCCCATTTCGTCAATTGTAAAATGTGTT
* * * * * *
97148127 TTTTACATCCAATTTCTCCCTTTTTAGTTCATTTTGGTGCAGATAGCAAGAAAGCGAGTGGACAT
258 TCTTACTTCCAATTTCT-CCGTTCTAGTTCATTCTGGTGCAGATGGCAAGAAAGCGA-TGGACAT
* * * *
97148192 ACTGCAACTCCTCCTACTTCTAAAAAGAAGGCAAAGCTGGTCACT-CCCAAAAGAC-GGCAGATT
321 ACTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCACTCCCCAAAAGACAGGCAGATT
* * * * * *
97148255 TTTCCTCCCATCTTTGCCCTTTTAGAGCTTTTGATTGTTATTTTACTAATGAGG
386 TTCCCTCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTATTTTACTAATAAAG
* * * * * *
97148309 GATCATATTACCGATTTCTTCAATTGTAAAATTTGTTCTTTACTTCCAATTTCTCCGTTCTAGTT
1 GATCATAATGCCCATTTCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTT
* * * * * * * *
97148374 TATTCTGGTACAGATAGCAAGAAATCGGGTGGAAATATTGCAACCCTTCCTGCTCCCAAAAAGAA
66 CATTCTGGTGCAGATGGCAAGAAAGCGAGTGGACATACTGCAACCCCTCCTGCTCCCAAAAAGAA
* * * * * * *
97148439 GGCAAAGTTGTTTACTCCCCAAAAAACAGGCAGGTTTCCCCTCCTATCTTTGCCCTTCTAGAGAT
131 GGCAAAGTTGGTCACTCCCCAAAAGACAGACAGATTTTCCCTCCCATCTTTGCCCTTCTAGAGAT
* * *
97148504 TTTGATTGTTATTTTACTAATGAGGGATCATAATGCCCATTTCTTCAATTGTAAAATGTGTTCCT
196 TTTGATTGCTATTTTACTAATGAGGGATCATAATGCCCATTTCGTCAATTGTAAAATGTGTTTCT
* * * * *
97148569 TACTTCCAATTTCTCCGTTCTAATTCATTCTAGTGCAGATGGCAAGAAAGCAGGTGGACGTATTG
261 TACTTCCAATTTCTCCGTTCTAGTTCATTCTGGTGCAGATGGCAAGAAAGC-GATGGACATACTG
* ** *
97148634 CAACCCCTCCTGCTCCCATAAAGAAAAACAAAGTTGGTCACTCCCCAAAAGACAGGCAGATTTTC
325 CAACCCCTCCTGCTCCCAAAAAG-AAGGCAAAGCTGGTCACTCCCCAAAAGACAGGCAGATTTTC
* * * *
97148699 CATCTCATCTTTGTCCTTCTAGAGATTTTGATTGCTATTTTACTAATAAGG
389 CCTCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTATTTTACTAATAAAG
* * * * *
97148750 GATCATAATACCAATTTCGTCAATTGTAAAATGTGTTCCTTATTTCCAATTTCTCCATTTTAGTT
1 GATCATAATGCCCATTTCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTT
* *
97148815 CATTCTGGTACAGATGGCAAGAAAGCGAGTGGACATACTGCAACCCCTCCTGCTCCCAAAAATAA
66 CATTCTGGTGCAGATGGCAAGAAAGCGAGTGGACATACTGCAACCCCTCCTGCTCCCAAAAAGAA
* *** * *** * * *
97148880 CGCAAAGTTGGTCACTCTTGAAAAGACAGGCATCCTTTCCTTCCCATCTTT-TCCTTCTAGGGAT
131 GGCAAAGTTGGTCACTCCCCAAAAGACAGACAGATTTTCCCTCCCATCTTTGCCCTTCTAGAGAT
* ** * *
97148944 TTTGATTGTTATTTTACTAATGAGGGATCATAATGCCTGTTTCGTTAATTGTAAAATATG-TTCT
196 TTTGATTGCTATTTTACTAATGAGGGATCATAATGCCCATTTCGTCAATTGTAAAATGTGTTTCT
* ** *
97149008 GTACTTTCAATTTCTTAAG-TCTAGTTCATTCTGGTGCAGATGGCAAAAAAGCGAGTGGACATAC
261 -TACTTCCAATTTC-TCCGTTCTAGTTCATTCTGGTGCAGATGGCAAGAAAGCGA-TGGACATAC
* * * * *
97149072 TACAACCCCTCCTACTCCCAAAAAGAAGGCAAAGCTAGTCACTCCCCAAAAGACAAGCAGGTTTT
323 TGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCACTCCCCAAAAGACAGGCAGATTTT
* ** * *
97149137 CTCTGTCATCTTTGCCCTTCTA-ATGATTTTGATTGCTATCTTACTAAT-GAG
388 CCCTCCCATCTTTGCCCTTCTAGA-GATTTTGATTGCTATTTTACTAATAAAG
** * * *
97149188 AGATCATAATTTCCATTTCGTTAATTGTAAAATGTGTTCCTTACTTTCAATTTCTCCATTCTAGT
1 -GATCATAATGCCCATTTCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGT
** * *
97149253 TCATTCTGGTGCAGATAACAAGAAAGCAAGTGGACATACTGCAACCCCTCCTGCTCCTAAAAAGA
65 TCATTCTGGTGCAGATGGCAAGAAAGCGAGTGGACATACTGCAACCCCTCCTGCTCCCAAAAAGA
* * *
97149318 AGGCAAAGCTT-GTCACT-CCCAAAAGATAGGCAGATTTTCCCTCCCATCTTTGCCCTTTTAGAG
130 AGGCAAAG-TTGGTCACTCCCCAAAAGACAGACAGATTTTCCCTCCCATCTTTGCCCTTCTAGAG
* * * *
97149381 ATTTTGATTGCTATTTTACTAATAAGGGATTATAATGCCCATTTCTTCAATTGTAAAATGTGTTC
194 ATTTTGATTGCTATTTTACTAATGAGGGATCATAATGCCCATTTCGTCAATTGTAAAATGTGTTT
* * * * * *
97149446 CTTACTTCCAATTTATCCGTTCTAGTTCATTCTGATGTAGATGGCAATAAAGCGGGTAGACATAC
259 CTTACTTCCAATTTCTCCGTTCTAGTTCATTCTGGTGCAGATGGCAAGAAAGC-GATGGACATAC
* * *
97149511 TGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTAGTCACTCCCCAAAAGATAGGAAGATTTT
323 TGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCACTCCCCAAAAGACAGGCAGATTTT
* * * * * *
97149576 CCCTCCAATCTTTGCCATTTTAGAGATTTTAATTGTTATTTTACTAATAAGG
388 CCCTCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTATTTTACTAATAAAG
* *
97149628 GATCATAATGCCCATTTCGTCAATTGTAAAATTTGTTCCTTACTTCCAATTTATCCGTTCTAGTT
1 GATCATAATGCCCATTTCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTT
* *
97149693 CATTCTGATGCAGATGGCAAGAAAGCGGGTGGACATACTGCAACCCCTCCTGCTCCCAAAAAGAA
66 CATTCTGGTGCAGATGGCAAGAAAGCGAGTGGACATACTGCAACCCCTCCTGCTCCCAAAAAGAA
* * * * * * *
97149758 GGCAACGCTGGTTACTCCCCAAAAGATAGGCAGATTTTCGCTCCCATTTTTGCCCTTCTAGAGA-
131 GGCAAAGTTGGTCACTCCCCAAAAGACAGACAGATTTTCCCTCCCATCTTTGCCCTTCTAGAGAT
* * ** ** ** *
97149822 ATTGATTTCTATTTTACTAATGAGATATCATAATGCCCATTTTATTTATTGTAAAATGTGTTCCT
196 TTTGATTGCTATTTTACTAATGAGGGATCATAATGCCCATTTCGTCAATTGTAAAATGTGTTTCT
* * * *
97149887 TACTTCCAATTTCTTCGATCTAATTCATTCTGGTGCAGATGGCAAGAAAGCGAGTGGACATATTG
261 TACTTCCAATTTCTCCGTTCTAGTTCATTCTGGTGCAGATGGCAAGAAAGCGA-TGGACATACTG
* * * * *
97149952 CAACCCCTCCTACTCCCAAAAATAAGGCAAAACTGGTCACTCACGAAAAGACA
325 CAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCACTCCCCAAAAGACA
97150005 AGAAGGCTTT
Statistics
Matches: 10209, Mismatches: 2056, Indels: 1063
0.77 0.15 0.08
Matches are distributed among these distances:
429 2 0.00
431 2 0.00
433 3 0.00
435 2 0.00
436 102 0.01
437 509 0.05
438 941 0.09
439 1925 0.19
440 2957 0.29
441 2647 0.26
442 350 0.03
443 31 0.00
444 9 0.00
445 24 0.00
446 14 0.00
447 14 0.00
448 11 0.00
449 11 0.00
450 8 0.00
451 2 0.00
452 19 0.00
453 32 0.00
454 36 0.00
455 43 0.00
456 41 0.00
457 19 0.00
458 13 0.00
459 2 0.00
460 8 0.00
461 7 0.00
462 2 0.00
463 2 0.00
464 5 0.00
465 13 0.00
466 18 0.00
467 10 0.00
468 7 0.00
469 12 0.00
470 14 0.00
471 18 0.00
472 10 0.00
473 13 0.00
474 12 0.00
475 20 0.00
476 7 0.00
477 17 0.00
478 7 0.00
479 8 0.00
480 5 0.00
481 1 0.00
482 3 0.00
483 5 0.00
484 2 0.00
486 6 0.00
490 5 0.00
491 7 0.00
492 6 0.00
493 3 0.00
494 1 0.00
495 5 0.00
496 11 0.00
497 13 0.00
498 16 0.00
499 15 0.00
500 9 0.00
501 15 0.00
502 8 0.00
503 12 0.00
504 23 0.00
505 26 0.00
506 14 0.00
507 12 0.00
508 7 0.00
ACGTcount: A:0.29, C:0.22, G:0.15, T:0.33
Consensus pattern (439 bp):
GATCATAATGCCCATTTCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTT
CATTCTGGTGCAGATGGCAAGAAAGCGAGTGGACATACTGCAACCCCTCCTGCTCCCAAAAAGAA
GGCAAAGTTGGTCACTCCCCAAAAGACAGACAGATTTTCCCTCCCATCTTTGCCCTTCTAGAGAT
TTTGATTGCTATTTTACTAATGAGGGATCATAATGCCCATTTCGTCAATTGTAAAATGTGTTTCT
TACTTCCAATTTCTCCGTTCTAGTTCATTCTGGTGCAGATGGCAAGAAAGCGATGGACATACTGC
AACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCACTCCCCAAAAGACAGGCAGATTTTCCC
TCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTATTTTACTAATAAAG
Found at i:97139025 original size:660 final size:658
Alignment explanation
Indices: 97136769--97150004 Score: 12231
Period size: 660 Copynumber: 19.9 Consensus size: 658
97136759 GATCTTGACA
* * *
97136769 GATCATAATGCCCATTTTGTCAATTGTAAAATGTGTTCCTTACTTCTAATTTCTCCATTCTAGTT
1 GATCATAATGCCCATTTCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTT
* * * *
97136834 CATTCTTGTGCAGATGGCAAGAAAAC-AGGTGGACATACTGCAACCCTTTCTGCTCCCAAAAAGA
66 CATTCTGGTGCAGATGGCAAGAAAGCGA-GTGGACATACTGCAACCCCTCCTGCTCCCAAAAAGA
* * * * * * * * * * *
97136898 AGGAAAACCTAGTTACTCCCCAAAAGGCAGGCAGAATTTCCCTCTCATCTTTTCCTTTTTAGAGA
130 AGGCAAAGCTGGTCACTCCCCAAAAGACAAGCAGATTTTCCCTCCCATCTTTGCCCTTCTAGAGA
* * *
97136963 TTTTGATTGCTATTTTACTAATGAGGGATCATAATGCCCATTTCGTCAATTGTAAAATGT-ATTC
195 TTTTGATTGCTATTTTACTAATAAGGGATCATAATGCCCATTTCGTTAATTGTAAAATGTGTTTC
* * * * *
97137027 TTTACTTCAAATTTCACCGTTCTAATTCATTCTGGTGCAGATGGTAAGAAAGCGTATGGACAAAC
260 -TTACTTCCAATTTCTCCGTTCTAGTTCATTCTGGTGCAGATGGCAAGAAAGCG-ATGGACATAC
* *
97137092 TGCAACCCCTCCTACTCCCAAAAAGAAGGCAAAGCTGGTCACTCCCCAAAAGATAGGCAGATTTT
323 TGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCACTCCCCAAAAGACAGGCAGATTTT
* * * * * * **
97137157 CCCTCTCATCTTTACTCTTTTAGAGATTTTGATTGCTATTTTACTAATAA-ATTATTATAATGTA
388 CCCTCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTATTTTACTAATAAGA-GATCATAATGCC
* ** * * *
97137221 AATTTTATCAATTGTAAAATGTGTTCATTACTTCAAATTTCTCTGTTCTAGTTCATTCTGGTGCA
452 CATTTCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTTCATTCTGGTGCA
* * * * * *
97137286 AATGGCAAGAAAGCGGGTTGACATACTGCAACCCCTCCTACTCCCAAAAAGAAGGCAAAGTTGCT
517 GATGGCAAGAAAGCGAGTGGACATACTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGT
* * *
97137351 CACTCCCCAAAAGACAGACAGATTTTCTCTCCCATCATTGCCCTTCTAGAGATTTTGATTGCTAT
582 CACTCCCCAAAAGACAGGCAGATTTTCCCTCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTAT
*
97137416 TTTACTAATGATG
647 TTTACTAAT-AAG
* * *
97137429 GATCATAATGCCCATTTCGTCAATTGTAAAATTTGTTTCTTACTTCCAATTTCTCTGTTCTAGTT
1 GATCATAATGCCCATTTCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTT
* ** * ** * **
97137494 TATTCTGGTGCAGAAAGCAAGAAAGCGTA-TGGATATACAACAACCCCTCTTGCTCTAAAAAAGA
66 CATTCTGGTGCAGATGGCAAGAAAGCG-AGTGGACATACTGCAACCCCTCCTGCTCCCAAAAAGA
* * * * *
97137558 AGGCAAAACTGGTCACTCCCCAAAAGATAGGTAGATTTTCCCTTCCATCTTTGCCCTTCTAGAGA
130 AGGCAAAGCTGGTCACTCCCCAAAAGACAAGCAGATTTTCCCTCCCATCTTTGCCCTTCTAGAGA
* * * * *
97137623 TTTTAATTGCTATTTTAATAATAAGAGATCATAATGCCCATTTCGTCAATTGTAAAATGTGTTCC
195 TTTTGATTGCTATTTTACTAATAAGGGATCATAATGCCCATTTCGTTAATTGTAAAATGTGTTTC
* * * * *
97137688 TTATTTCCAATTTCTCCGTTCTAGCTCATTCTGGTACAGATGGCAAGTAAGAG-GGTGGACAAAC
260 TTACTTCCAATTTCTCCGTTCTAGTTCATTCTGGTGCAGATGGCAAG-AA-AGCGATGGACATAC
* * *
97137752 TGCAACCCCTCCTACTCCCCAAAAGAAGGCAAAGCTGGTCACTTCCCAAAAGACAGGCAGATTTT
323 TGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCACTCCCCAAAAGACAGGCAGATTTT
* * *
97137817 CCCTCCCATCTTTGCCCTACTAGAGA-TTTGATTGCTATTTTACTAATGAGAGATCATAATACCC
388 CCCTCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTATTTTACTAATAAGAGATCATAATGCCC
* * * * *
97137881 ATTTCATCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTTCGATCTAGTTCATTTTGGTGCAA
453 ATTTCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTTCATTCTGGTGCAG
* ** * * *
97137946 ATAGCAAGAAATAGGGTGGACATATTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGTTC
518 ATGGCAAGAAAGCGAGTGGACATACTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTC
** * * * * *
97138011 ACTCTACAAAAAATAGGTAGACTTTCCGTCCCATCTTT-CCCTTCTAGAGATTTTGATTGCTATT
583 ACTCCCCAAAAGACAGGCAGATTTTCCCTCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTATT
* *
97138075 TTACAAATGAG
648 TTACTAATAAG
* * * * * * *
97138086 GAATAATAAT-CCCGTTTCGTTAATTGTAAAATATGTTCTTTACTTTCAATTTCTCTGTTCTAGT
1 G-ATCATAATGCCCATTTCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGT
* * *
97138150 TCATTCTAGTGCAGATGG-AAAAAAGCGAGTGGACATACTGTAACCCCTCCTGCTCCCAAAAAGA
65 TCATTCTGGTGCAGATGGCAAGAAAGCGAGTGGACATACTGCAACCCCTCCTGCTCCCAAAAAGA
* * * *
97138214 AGACAAAGCTGGTCACTCCCCAAAAGACAAGTAGATTTTCCCTCTCATCTTTGCCCCTCTAGAGA
130 AGGCAAAGCTGGTCACTCCCCAAAAGACAAGCAGATTTTCCCTCCCATCTTTGCCCTTCTAGAGA
** * * ** * * *
97138279 TTTTGATTATTATTTTACTAATGAGGGATCATAATACTTATTTCGTCAATTGTAAAATGTATTCC
195 TTTTGATTGCTATTTTACTAATAAGGGATCATAATGCCCATTTCGTTAATTGTAAAATGTGTTTC
* * * * * *
97138344 TTACTTCAAATATCACCGTTCTAGTTCATTCTAGTGCAGATGGTAAGAAAGCGTATAGACATACT
260 TTACTTCCAATTTCTCCGTTCTAGTTCATTCTGGTGCAGATGGCAAGAAAGCG-ATGGACATACT
* * * * * * *
97138409 GCAACCTCTCCTACTCCTAAAAAGAAGGAAAAGCTAGTCACTTCCCAAAAGATAGGCAGATTTTC
324 GCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCACTCCCCAAAAGACAGGCAGATTTTC
* * *
97138474 CCTCCCATCTTTGCCCTTTTAGAGATTTTGATTGTTATTTTACTAATAAAAGATCATAATGCCCA
389 CCTCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTATTTTACTAATAAGAGATCATAATGCCCA
* * *
97138539 TTTCATCAATTGTAAAATGTGTTCCTTACTTCTAATTTCTCTGTTCTAGTTCATTCTGGTGCAGA
454 TTTCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTTCATTCTGGTGCAGA
* * * * * ** * *
97138604 TGGCAAGAAAGCGGGTGAACATACTGTAACCTCTCTTGCTCTAAAAAAGAAAGCAAAGCTAGTCA
519 TGGCAAGAAAGCGAGTGGACATACTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCA
* ** * * *
97138669 CTCCCTAAAAGACAGAAAGATTTTCCGTCCCATCTTTGCCCTTCTAAAGATTTTGATTACTATTT
584 CTCCCCAAAAGACAGGCAGATTTTCCCTCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTATTT
97138734 TACTAATAAAG
649 TACTAAT-AAG
* * *
97138745 GATCATAATGCCCATTTCGTCAATTGTAAAATATGTTTCTTACTTCCAATTTCTCCATTCTAGTT
1 GATCATAATGCCCATTTCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTT
* ** ** * * * * * * * *
97138810 TATTCTTCTATAAATGACAAAAAAGCGGGTAGACTTACTACAACCCCTCTTGCTCCCAAAAAGAA
66 CATTCTGGTGCAGATGGCAAGAAAGCGAGTGGACATACTGCAACCCCTCCTGCTCCCAAAAAGAA
* * * * * *
97138875 GGGAAAGCTAGTTACTCTCCAAAAGTCAAGCAGATTTTCCCTCCCATCTTTGCCCTTTTAGAGAT
131 GGCAAAGCTGGTCACTCCCCAAAAGACAAGCAGATTTTCCCTCCCATCTTTGCCCTTCTAGAGAT
97138940 TTTGATTGCTATTTTACTAATAAGGGATCATAATGCCCATTTCGTTAATTGTAAAATGTGTTTCT
196 TTTGATTGCTATTTTACTAATAAGGGATCATAATGCCCATTTCGTTAATTGTAAAATGTGTTTCT
* * * *
97139005 TACTTCCATTTTCTCCGTTCTAGTTCATTTTGGTGCAGATGGCAAGAAAGTGGGTGGACATACTG
261 TACTTCCAATTTCTCCGTTCTAGTTCATTCTGGTGCAGATGGCAAGAAAG-CGATGGACATACTG
* * * * * * *
97139070 CAACCCCTCCTGCTCCAAAAAAAAAGGCAAAGTTGTTCACTCCCCAAAAGATAGACAGGTTTTCC
325 CAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCACTCCCCAAAAGACAGGCAGATTTTCC
* * * *
97139135 CTTCCATCTTTGCCCTTCTAGAGATTTTGATTACTATTTTACTAATGAGTGATCATAATGCCCAT
390 CTCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTATTTTACTAATAAGAGATCATAATGCCCAT
* * * * * *
97139200 TTCGTTAATTGTAAAATGTGTTCCTTACTTCCAATTTCACTGTTCTAATCCATTTTGGTGCAGAT
455 TTCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTTCATTCTGGTGCAGAT
* * *
97139265 GGCAAGAAAGCGAGTGGACATACTGTAACCCCTCTTGCTCCCAAAAAGAAGGCAAAGTTGGTCAC
520 GGCAAGAAAGCGAGTGGACATACTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCAC
* * * ** *
97139330 T-CCTAAAAAATCAAGCAGATTTTCCCTCCCATCTTTGCTATTCTAGAGATTTTGATTACTATTT
585 TCCCCAAAAGA-CAGGCAGATTTTCCCTCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTA-TT
*
97139394 TTACTAAAAATG
648 TTACTAATAA-G
* * * * * *
97139406 GATCATAATGCCCATTTCATCTATTGTAAAATATGTTCCTTATTTCTAGTTTCTCCGTTCTAGTT
1 GATCATAATGCCCATTTCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTT
* * * * * *
97139471 TATTCTGGTGCATATGGCAAGAAAGCGGGTGGACATACTACAACCCCTCCTGCACCCATAAAGAA
66 CATTCTGGTGCAGATGGCAAGAAAGCGAGTGGACATACTGCAACCCCTCCTGCTCCCAAAAAGAA
* * * * ** * *
97139536 GGCAAAACTGGTCAGTCCCCAAAAGACAAGCAAACTTTATCTACCATATTTGCCCTTCTAGAGAT
131 GGCAAAGCTGGTCACTCCCCAAAAGACAAGCAGATTTTCCCTCCCATCTTTGCCCTTCTAGAGAT
* ** *
97139601 TTTGATTACTATTTTACTAATAAGATATCATAATGCCTATTTCGTTAATTGTAAAATGTG-TTCT
196 TTTGATTGCTATTTTACTAATAAGGGATCATAATGCCCATTTCGTTAATTGTAAAATGTGTTTC-
* * * **
97139665 TTA-TATCCAATTTCTCCATTCTAGTTTATTCTGATGCAGATAACAAGAAAGCGAGTGGACATAC
260 TTACT-TCCAATTTCTCCGTTCTAGTTCATTCTGGTGCAGATGGCAAGAAAGCGA-TGGACATAC
* * * * *
97139729 TGCAACCCTTCCTACTCCTAAAAAGAAGGCAAAGCTGGTCAATCCCCAAAAGACAAGCAGATTTT
323 TGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCACTCCCCAAAAGACAGGCAGATTTT
* * * * * **
97139794 CCCTCCCATCTTTAACCCTTTTAAAGTTTTTTATTGCTATTTTACTAATGTCG-GATCATAATGC
388 CCCTCCCATCTTT-GCCCTTCTAGAGATTTTGATTGCTATTTTACTAAT-AAGAGATCATAATGC
* **
97139858 CCATTTCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTTTATT-TAGGAA
451 CCATTTCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTTCATTCT-GGTG
* ** * *
97139922 CAGATAGCAAGAAA-TTAGGTGGACATATTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGTT
515 CAGATGGCAAGAAAGCGA-GTGGACATACTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCT
* * * * * *
97139986 GGTCACTCCTCAAAAGACAAGTAGATTTTCCATTCCATCTTTGTCCTTCTAGAGATTTTGATTGC
579 GGTCACTCCCCAAAAGACAGGCAGATTTTCCCTCCCATCTTTGCCCTTCTAGAGATTTTGATTGC
97140051 TATTTTACTAATAAGG
644 TATTTTACTAATAA-G
* * * * *
97140067 GATCATAATGCCGATTTTGTCAATTGTAAAATGTGTTCCTTATTTTCAATTTCTCCGTTTTAGTT
1 GATCATAATGCCCATTTCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTT
* * *
97140132 CATTCTGGTGCAGATGGCAAGAAAGTGAGTGGACATACTACAACCCCTTCTGCTCCCAAAAAGAA
66 CATTCTGGTGCAGATGGCAAGAAAGCGAGTGGACATACTGCAACCCCTCCTGCTCCCAAAAAGAA
* * * * *
97140197 GGCAAAGCTGGTCATTCCCGAAAAGACAAGCAGCA-TTTCCTTCCCATATTT-TCCTTCTAGAGA
131 GGCAAAGCTGGTCACTCCCCAAAAGACAAGCAG-ATTTTCCCTCCCATCTTTGCCCTTCTAGAGA
* * * *** *
97140260 TTTTTATTGCTATTTTACTAATGAGGAATCATAATGCTTGTTTCGTTAATTGTAAAATATG-TTC
195 TTTTGATTGCTATTTTACTAATAAGGGATCATAATGCCCATTTCGTTAATTGTAAAATGTGTTTC
** *** * * * *
97140324 TGTACTTTTAATTTCTATATTCTAGTTTATTCTGGTGCAGATGACAAAAAAGCAAGTGGACATAC
260 T-TACTTCCAATTTCTCCGTTCTAGTTCATTCTGGTGCAGATGGCAAGAAAGCGA-TGGACATAC
* * * * * ** * *
97140389 TACAATCCCTCATACTCTCAAAAAGAAGGCAAATTTGGTCACTCCTCAAAAGACAAGCAGATTTT
323 TGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCACTCCCCAAAAGACAGGCAGATTTT
* * * * *
97140454 CCAT-CAATCTTTGTCCTTCTAGAGATTTTGATTGTTATTTTACTAATAAGGGATCATAATGCCC
388 CCCTCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTATTTTACTAATAAGAGATCATAATGCCC
* * * * * *
97140518 ATTTCGTCAATTGTAAAATTTGTTCCTTATTTTCAATTTCTCCTTTTTAGTTCATTCTGATGCAG
453 ATTTCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTTCATTCTGGTGCAG
* * *
97140583 ATGGTAAGAAAGCGAGTGGACATACTGCAACCTCTCCTGCTCCCAAAAA-AAAGCAAAGCTGGTC
518 ATGGCAAGAAAGCGAGTGGACATACTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTC
* ** ** *
97140647 ACTCCCAAAAAGACAGGCAGCCTTTCATTCCCATCCTT-CCCTTCTAGAGATTTTGATTGCTATT
583 ACTCCCCAAAAGACAGGCAGATTTTCCCTCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTATT
*
97140711 TTACTAATGAGG
648 TTACTAAT-AAG
** * * * ** **
97140723 GATCATAATGCCTGTTTTGTTAATTGTAAAATATGTT-CTGTACTTTTAATTTCTCTATTCTAGT
1 GATCATAATGCCCATTTCGTCAATTGTAAAATGTGTTCCT-TACTTCCAATTTCTCCGTTCTAGT
* * ** * * * * *
97140787 TCATTCTGGTGCAGATGGAAAAAAAATGAGTAGATATACTACAACCTCTCATGCTCCCAAAAAGA
65 TCATTCTGGTGCAGATGGCAAGAAAGCGAGTGGACATACTGCAACCCCTCCTGCTCCCAAAAAGA
* * * * * *
97140852 AGGCAAAGCTCGTCAATCCCTAAAA-ATTAAGCAGATTTTCCCTCCCATCTTTACCATTCTAGAG
130 AGGCAAAGCTGGTCACTCCCCAAAAGA-CAAGCAGATTTTCCCTCCCATCTTTGCCCTTCTAGAG
* * *
97140916 ATTTTGATTGCTATTTTTACTAAAAATGGATCATAATGCCCATTTCGTCT-ATTGTAAAATATGT
194 ATTTTGATTGCTA-TTTTACTAATAAGGGATCATAATGCCCATTTCGT-TAATTGTAAAATGTGT
* * * * * *
97140980 TCCTTATTTCCAATTTCTTCGTTTTAGTTCATTCTGGTGCATATGGCAAGAAAGCGGGTGGACAT
257 TTCTTACTTCCAATTTCTCCGTTCTAGTTCATTCTGGTGCAGATGGCAAGAAAGC-GATGGACAT
* * * * *
97141045 TCTACAACCCCTCCTGCACCCAAAAAGAAGGCAAAACTAGTCACTCCCCAAAAGACAGGCA-AGT
321 ACTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCACTCCCCAAAAGACAGGCAGA-T
** * *
97141109 TTTATCTACCATCTTTGCCCTTCTAGAGATTTTGATTACTATTTTACTAATAAGAGATCATAATG
385 TTTCCCTCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTATTTTACTAATAAGAGATCATAATG
* * * * * * * * *
97141174 CCTATTTCGTTAATTGTAAAATATGTTCTTTACATCCAAATTCTCCATTCTAATTTATTCTGGTG
450 CCCATTTCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTTCATTCTGGTG
** * * * * * *
97141239 CAGATAACAAGAAAGTGAGTGGACATACTACAACACCTCATACTCCCAAAAAGAAGGCAAAGCTA
515 CAGATGGCAAGAAAGCGAGTGGACATACTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTG
* * * * *
97141304 GTTACTCTCCAAAAG-CAAGGCAGATTTTCCCTCCCATTTTTAACCCTTTTAGAG-TGTTTGATT
580 GTCACTCCCCAAAAGAC-AGGCAGATTTTCCCTCCCATCTTT-GCCCTTCTAGAGAT-TTTGATT
**
97141367 GCTATTTTACTAATGTGG
642 GCTATTTTACTAAT-AAG
* *
97141385 GATCATAATGCCCATTTCGTCAATTGTAAAATGTGTTCTTTACTTCCAATTTCTCCATTCTAGTT
1 GATCATAATGCCCATTTCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTT
* * ** * * *
97141450 TATTCTAG-AAAGATAGCAAGAAATC-AGGTGGACATATTGCAACCCCTCCTGCTCCCAAAAAGA
66 CATTCTGGTGCAGATGGCAAGAAAGCGA-GTGGACATACTGCAACCCCTCCTGCTCCCAAAAAGA
* * * * *
97141513 AGGTAAAGTTGGTCACTCCCTAAAAGACAAGCAGATTTTCCATCCCATCTTTGTCCTTCTAGAGA
130 AGGCAAAGCTGGTCACTCCCCAAAAGACAAGCAGATTTTCCCTCCCATCTTTGCCCTTCTAGAGA
*
97141578 TTTTGATTGCTATTTTACTAATAAGGGATCATAATGCCCATTTCGTCAATTGTAAAATGTG-TTC
195 TTTTGATTGCTATTTTACTAATAAGGGATCATAATGCCCATTTCGTTAATTGTAAAATGTGTTTC
* * * *
97141642 ATTATTTCCAATTTCTCCGTTTTAGTTCATTCTCGTGCAGATGGCAAGAAAGTGAGTGGACATAC
260 -TTACTTCCAATTTCTCCGTTCTAGTTCATTCTGGTGCAGATGGCAAGAAAGCGA-TGGACATAC
* * * * **
97141707 TGCGACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCACTCTCGAAAAGATAGGCAGCCTTT
323 TGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCACTCCCCAAAAGACAGGCAGATTTT
* * ** * * * *** * ** *
97141772 CCTTCCCATCTAGTGCAGATAGAAAAAAATCAGTAGACATACTGTAACCCCTCCTGCT-CTCAAA
388 CCCTCCCATCT-TTGC-CCT---------TC--TAGAGAT--TTTGATTGCT-ATTTTACT-AAT
** * * ** * *
97141836 AAGAAGA-CA-AAGCTGGTCACTTC-CCAAAAG-ACAGGAA-GATTTTCCCT-C-T-C-ATCTT-
436 AAG-AGATCATAA--TGCCCATTTCGTCAATTGTA-A--AATG-TGTTCCTTACTTCCAAT-TTC
** *** * ** ** * * * *** *
97141891 TGCCCCTCTAGAGAATT-TGATTGCTATTTTACTA-ATA---AG-GGATCATAATGC--CTATTT
493 T-CCGTTCTAGTTCATTCTG-GTGC-AGATGGCAAGAAAGCGAGTGGA-CATACTGCAACCCCTC
* * * *** * ** * * * *
97141948 C-G-T--CAATTGTAA-AATGTATTTCT--T-ACT--TCAAATTTCACTGTTCTAGTTTATTCTG
554 CTGCTCCCAA---AAAGAAGGCAAAGCTGGTCACTCCCCAAA--AGACAG-GC-AGATT-TTC-C
* ** ** ** * * * ** ** ** * *
97142003 GTGCAGATGGC-AAGAAAGCGTATAAACG-TACTGCA-ACCCCTTCTACTCCCAAAAAG
610 CT-CCCAT--CTTTG--CCCTTCTAGA-GATTTTG-ATTGCTATTTTACT---AATAAG
* * * ** ** * *
97142059 AAGGT-A-AAGCTGGCCA-CTCCCCAAAAG-AAAGGCA-GATTTTCC-CAC--CC-ATCTT-TGC
1 --GATCATAA--TGCCCATTTCGTCAATTGTAAA---ATG-TGTTCCTTACTTCCAAT-TTCT-C
* * ** * * ** ** * * * * * *
97142114 CTTTTTAG-AGATTTTGATTGCCATTTTACTAATAAAGGATCATAATGCCCATTTCATCAATTGT
56 CGTTCTAGTTCATTCTG-GTG-CAGATGGC-AAGAAA-G--C-GAGTG--GA---CAT--ACTGC
**** ** * * **** ***** * ** * *** *
97142178 AAAATGTGTTCCTTACTTCTAATTTCTCCATTCTTGTTCATTCTGGTGCAGATGGCAAGA-AAGG
107 AACCCCTCCTGC-TCCCAAAAAGAAGGCAAAGC-TGGTCA--CT-CCCCA-A----AAGACAAGC
* * *** * * * * ** ** * * **
97142242 GGGTGGACAACTGCAACC-CCTTTTGCTCC--CAAAAAGA--AGGAAAAGCTA-GTCACTCCCTA
162 AGATTTTC-CCT-C--CCATC-TTTGC-CCTTC-TAGAGATTTTG-ATTGCTATTTTACT-AATA
** * * * * * * **
97142301 AAAGATAGAAAGATTTTCCC-TCCTATCTTTACCTTTCTAAAGAT-T-TTGATTAC-T---ATTT
218 AGGGAT-CATA-A--TGCCCAT--T-TCGTTA--ATTGTAAA-ATGTGTTTCTTACTTCCAATTT
* ** * ** ** ** * ** ** * *
97142359 -TAC-TAATAAGGAATCATAAT-GCCCATTTCGTCAATTGTAAA-ATATGTTCCTTACTTCCAAT
273 CTCCGTTCT-A-G-TTCATTCTGGTGCAGAT-GGCAA--G-AAAGCGATG-GACATAC-TGCAA-
* * * ** * * * **
97142420 TTCTCCGTTCTAGTTCATTCTGGTGTTATAACAAAAAAGCGGGTAGACCTACTACAACCCCTCTT
328 --C-CC---C----TC---C---TG--CT-CCCAAAAAGAAGGCAAAGCTGGT-C-A-----C-T
*
97142485 GCTCCCAAAAAGAAGGCAAAGCTAGTCACACTCTAAAAGACAAGCAGATTTTCCCTCCTATCTTT
366 -C-CCC-AAAAG-A------------------C----AG----GCAGATTTTCCCTCCCATCTTT
* * * *
97142550 GCCCTTTTAGAGATTTTGATTGCTATTTTACTAATAAGGGATCATAGTGCCCATTTCGTTAATTG
401 GCCCTTCTAGAGATTTTGATTGCTATTTTACTAATAAGAGATCATAATGCCCATTTCGTCAATTG
* * * * * * *
97142615 TAAAATGTGTTTCTTACTTCTATTTTCTCCTTTCTAGTTCATTTTGGTACAGATGGCAAGAAAGT
466 TAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTTCATTCTGGTGCAGATGGCAAGAAAGC
* * * * *
97142680 GAGCGGACATACTGCAACCGCTCTTGCTCCAAAAAAGAAGGCAAAGCTGTTCACTCCCCAAAAG-
531 GAGTGGACATACTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCACTCCCCAAAAGA
* * * * *
97142744 CTAGACAGGTTTTCCCTCCCATCTTTGCCCTTCTAGAGATTTTAATTACTATTTTACTAATTAG
596 C-AGGCAGATTTTCCCTCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTATTTTACTAATAAG
* * * * *
97142808 TGATCATAATGCCCATTTCATTAATTGTAAAATATGTTCCTGACTTCCAATTTCTCTGTTCTAGT
1 -GATCATAATGCCCATTTCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGT
* * * *
97142873 CCATTCTGATGTAGATGACAAGAAAGCGAGTGGACATACTGCAACCCCTCCTGCTCCCAAAAAGA
65 TCATTCTGGTGCAGATGGCAAGAAAGCGAGTGGACATACTGCAACCCCTCCTGCTCCCAAAAAGA
* * * * ** * * *
97142938 ATGCAAAGCTAGTCACTCCCGAAAAGA-AAGGTAGCCTTTCCTTTCCATCTTT-CCCTTCCAGAG
130 AGGCAAAGCTGGTCACTCCCCAAAAGACAA-GCAGATTTTCCCTCCCATCTTTGCCCTTCTAGAG
* * *** * **
97143001 ATGTTAATTGCTATTTTACTAATGAA-GGATCATAATGCATGTTTCGTTAATTTTAAAATACG-T
194 ATTTTGATTGCTATTTTACTAAT-AAGGGATCATAATGCCCATTTCGTTAATTGTAAAATGTGTT
** ** * *
97143064 TCTGTACTTTTAATTTCTCTATTGTAGTTCATTCTGGTGCAGATGGCAAAAAAGCGAGTGGACAT
258 TCT-TACTTCCAATTTCTCCGTTCTAGTTCATTCTGGTGCAGATGGCAAGAAAGCGA-TGGACAT
** * **
97143129 ACTATAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCACTCCTCAAAA-ATCAAACAGAT
321 ACTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCACTCCCCAAAAGA-CAGGCAGAT
* * * * *
97143193 TTTCCCTCCCTTCTTTGACATTCTAGAGATTTTTATTGCTATTTTTACTAATGATGA-ATCATAA
385 TTTCCCTCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTA-TTTTACTAAT-AAGAGATCATAA
* * * *
97143257 TGCCCATTTCGTCAATTGTAAAATATGTTTCTTATTTCCAATTTCTCCGTTCTAGTTTATTCTGG
448 TGCCCATTTCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTTCATTCTGG
* * * * * * * * * *
97143322 TGCATATGGTAAAAAAGTGGGTGGACATACTACAATCCCTCTTTCACCCAAAAAGAAGGCAAAGC
513 TGCAGATGGCAAGAAAGCGAGTGGACATACTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGC
* * * * *
97143387 TGGTCACTCCCCAAAAGACAGGCAGGTTTTCTCTACCATCTTTACCCTTCTAAAGATTTTGATTG
578 TGGTCACTCCCCAAAAGACAGGCAGATTTTCCCTCCCATCTTTGCCCTTCTAGAGATTTTGATTG
*
97143452 CTATTTTACTAATGAG
643 CTATTTTACTAATAAG
* * *
97143468 ATATCATAATGCCCATTTCGAT-AATTGTAAAATGTGTTCCTTACATCCAATTTCTCCATTCTAG
1 -GATCATAATGCCCATTTCG-TCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAG
* * * * * * * * *
97143532 TTTATTCTGCG-ACAGATAGCACGAAAGTGAGTGGATATACTGTAACCCATCCTGTTCCCAAAAA
64 TTCATTCTG-GTGCAGATGGCAAGAAAGCGAGTGGACATACTGCAACCCCTCCTGCTCCCAAAAA
* * * * * * * *
97143596 GAATGCAAAGCTGGTTACTCCCTAAAA-AAATAGGCAGATTTTCTCTCCTATCTTTAACCCTTTT
128 GAAGGCAAAGCTGGTCACTCCCCAAAAGACA-A-GCAGATTTTCCCTCCCATCTTT-GCCCTTCT
** ** *
97143660 AGACCTTTTGATTGCTATTTTACTAATGTGGGATCATAA-GTCCCATTTCGTCAATTGTAAAATG
190 AGAGATTTTGATTGCTATTTTACTAATAAGGGATCATAATG-CCCATTTCGTTAATTGTAAAATG
* * ** * *
97143724 TGTTCCTTACTTCCAATTTCTCCGTTCTAGTTCATTTTGGAACAGATAGCAAGAAATCGAGTGGA
254 TGTTTCTTACTTCCAATTTCTCCGTTCTAGTTCATTCTGGTGCAGATGGCAAGAAAGCGA-TGGA
* * * * *
97143789 TATATTGTAACCCCTTCTGCTCCCAAAAAGAAGGCAAAGCTGGTCAC-CCCCAAAAGACAGACAG
318 CATACTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCACTCCCCAAAAGACAGGCAG
* * **
97143853 ATTTTCCATCCCATCATTATCCTTCTAGAGATTTTGATTGCTATTTTACTAATAAGAGATCATAA
383 ATTTTCCCTCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTATTTTACTAATAAGAGATCATAA
*
97143918 TGCCCATTTCGTCAATTGTAAAATGTGTTCCTTATTTCCAATTTCTCCGTGT-TAGTTCATTCTG
448 TGCCCATTTCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGT-TCTAGTTCATTCTG
* * * *
97143982 TTGCAGATGGCAAGAAAGCAAGTGGACGTACTGCAACCCCTCCTGCTTCCAAAAAGAAGGCAAAG
512 GTGCAGATGGCAAGAAAGCGAGTGGACATACTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAG
* * ** * * *
97144047 CTGGTTACTCCCAAAAAGACAGGCAGCCTTTCCTTTCCATCTTT-CCCTTCTAGAGATATTGATT
577 CTGGTCACTCCCCAAAAGACAGGCAGATTTTCCCTCCCATCTTTGCCCTTCTAGAGATTTTGATT
* *
97144111 GCTAGTTTACTAATGAG
642 GCTATTTTACTAATAAG
* * * ** ** *
97144128 AGATCATAATGCCTATTTCGTTAATTGTAAAATATGTT-CTATACTTTTAATTTCTCTATTTTAG
1 -GATCATAATGCCCATTTCGTCAATTGTAAAATGTGTTCCT-TACTTCCAATTTCTCCGTTCTAG
* * ** * *
97144192 TTCATTCTGGTGCAGATGGCAAAAAAGCGAGTGAACATACTAAAACCCCTCCTACCCCCAAAAAG
64 TTCATTCTGGTGCAGATGGCAAGAAAGCGAGTGGACATACTGCAACCCCTCCTGCTCCCAAAAAG
* *
97144257 AAGGCAAAGCTGGTCACTCCCCAAAA-ATCAAGCAGATTTTCCCTTCCATCTTTGCCATTCTAGA
129 AAGGCAAAGCTGGTCACTCCCCAAAAGA-CAAGCAGATTTTCCCTCCCATCTTTGCCCTTCTAGA
* ** * * *
97144321 GATTTTGATTGCTATTTTTACTAATGAGATATCATAATGCCAATTTCGTCAATTTTAAAATGTGT
193 GATTTTGATTGCTA-TTTTACTAATAAGGGATCATAATGCCCATTTCGTTAATTGTAAAATGTGT
* * * * *
97144386 TCCTTACTTCCAATTTCTCCGTTCTAGTTTATTCTGGTGCATG-TAGCAAGAAAGTGGTTGGACA
257 TTCTTACTTCCAATTTCTCCGTTCTAGTTCATTCTGGTGCA-GATGGCAAGAAAG-CGATGGACA
** * * * *** * * *
97144450 TACTTTAACCCCTCCTACTCTCAAAAAGAAGGCAAAGCTAGTCACTTTTCAAAAGATAAGCAAAT
320 TACTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCACTCCCCAAAAGACAGGCAGAT
** * *
97144515 TTTTTCTCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTATTTTACTAATAAGGGATCATAAGG
385 TTTCCCTCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTATTTTACTAATAAGAGATCATAATG
* * * * * * **
97144580 CCCATTTCGTTAATTGTAAAATGTGTTTCTTACTTCTATTTTCTCCGTTCTAGTTTATTTTAATG
450 CCCATTTCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTTCATTCTGGTG
* * * *
97144645 CAGATGGCAAGAAAGTG-GTGGACATAATACAACCCCTCCTGCTCCGAAAAAGAAGGCAAAGCTG
515 CAGATGGCAAGAAAGCGAGTGGACATACTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTG
* * * *
97144709 TTCACTCCCCAAAAGATAGGCAGGTTTTCCCTCCCATCTTTGCCCTTCTAGAGATTTTGATTACT
580 GTCACTCCCCAAAAGACAGGCAGATTTTCCCTCCCATCTTTGCCCTTCTAGAGATTTTGATTGCT
**
97144774 ATTTTACTAATGGG
645 ATTTTACTAATAAG
* * * *
97144788 TGATCATAATGCCCATTTCGTTAATTATAAAATGTGTTCCTTACTTCCAATTTCTCTGTTCTAAT
1 -GATCATAATGCCCATTTCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGT
* * *
97144853 TCATTCTGGTGCAGATGGCAAGAAAACGAGTGGACATACTGTAACCCCTCTTGCTCCCAAAAAGA
65 TCATTCTGGTGCAGATGGCAAGAAAGCGAGTGGACATACTGCAACCCCTCCTGCTCCCAAAAAGA
* * * * * *
97144918 AGGCAAAGTTGCTCATTCCCCGAAAA-TCAAGCAGTTTTTCCCTCCCATCTTTGCCATTCTAGAG
130 AGGCAAAGCTGGTCACTCCCC-AAAAGACAAGCAGATTTTCCCTCCCATCTTTGCCCTTCTAGAG
* * * * * * *
97144982 ATTTTGATTGCTATTTTTACTAATGATGAATTATAATGCCTATTTCGTCAATTGTAAAATATG-T
194 ATTTTGATTGCTA-TTTTACTAATAAGGGATCATAATGCCCATTTCGTTAATTGTAAAATGTGTT
* * * *
97145046 TCTTTATTTCCAATTTCTCCGTTCTAGTTTATTCTGGTGCATATGGCAAGAAAGCGGTTGGACAT
258 TC-TTACTTCCAATTTCTCCGTTCTAGTTCATTCTGGTGCAGATGGCAAGAAAGC-GATGGACAT
* * * * *
97145111 ACTACAACCCTTCCTGCACCCAAAAAGAAGGCAAAGCTGGTCACTCCCCAAAAGACATGCAGGTT
321 ACTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCACTCCCCAAAAGACAGGCAGATT
* * * * * *
97145176 TTCTCTACCATTTTTACCCTTCTATAGATTTTGATTGCTATTTTACTAATGAGAGATCATAATGC
386 TTCCCTCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTATTTTACTAATAAGAGATCATAATGC
* * * * *
97145241 CCATTTCGTTAATTGTAAAATGTGTTCCTTACATCCAATTTCTCCATTCTAGTTTATTCTGATGC
451 CCATTTCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTTCATTCTGGTGC
** * * *
97145306 AGATAACAAGAAAGCGAGTGGACATACTGCAACCCATCCTACTCCCAAAAAGAAGGCAAAGCTAG
516 AGATGGCAAGAAAGCGAGTGGACATACTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGG
* * * * * * * *
97145371 TCACTTCCCAAAAGACAAGTAAATTTTCCCTCTCATCTTTAACCCTTTTAGAGTTTTTGATTGCT
581 TCACTCCCCAAAAGACAGGCAGATTTTCCCTCCCATCTTT-GCCCTTCTAGAGATTTTGATTGCT
**
97145436 ATTTTACTAATGTGG
645 ATTTTACTAAT-AAG
* * * *
97145451 GATAATAATTCCCATTTCGTCAATTGTAAAATGCGTTCCTTACTTCCAATTTCTCCGTTCTAATT
1 GATCATAATGCCCATTTCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTT
* *** * * * * * **
97145516 TATTCTGGAATAGATAGCAAGAAATC-AGGTAGACATATTGCAACCCCTCCTACTCTAAAAAAGA
66 CATTCTGGTGCAGATGGCAAGAAAGCGA-GTGGACATACTGCAACCCCTCCTGCTCCCAAAAAGA
* * *
97145580 AGGCAAAGCTGGTCACTCCCCAAAAAAC-AGACAGATTTTCCATCCCATCTTTGTCCTTCTAGAG
130 AGGCAAAGCTGGTCACTCCCCAAAAGACAAG-CAGATTTTCCCTCCCATCTTTGCCCTTCTAGAG
* *
97145644 ATTTTGATTGCTATTTTACTAATGAGGGATCATAATGCCCATTTCAG-TAATTGTAAAATATGTT
194 ATTTTGATTGCTATTTTACTAATAAGGGATCATAATGCCCATTTC-GTTAATTGTAAAATGTGTT
* * * *
97145708 CCTTATTTCCAATTTCTCCGTTTTAGTTCATTCTGGTGCAGATGGTAAGAAAGCGAGTGGACATA
258 TCTTACTTCCAATTTCTCCGTTCTAGTTCATTCTGGTGCAGATGGCAAGAAAGCGA-TGGACATA
* * **
97145773 CTTCAA-CCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCACTCCCGAAAAGACAGGCAGCCTT
322 CTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCACTCCCCAAAAGACAGGCAGATTT
* * *
97145837 TCCTTCCCATCTTT-CCCTTCTAGAGATTTTAATTGCTATTTTACTAATAAGGGATCATAATGCC
387 TCCCTCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTATTTTACTAATAAGAGATCATAATGCC
** * * * * ** ***
97145901 TGTTTTGTTAATTATAAAATATGTT-CTGTACTTTTAATTTCTGTATTCTAGTTCATTCTGGTGC
452 CATTTCGTCAATTGTAAAATGTGTTCCT-TACTTCCAATTTCTCCGTTCTAGTTCATTCTGGTGC
** * * * * * *
97145965 AGATGATTAAAAAAGCAAGTGGACATACTGCAATCCCTCCTGCTCCAAAAAAGAAGGCAAAGTTA
516 AGATG-GCAAGAAAGCGAGTGGACATACTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTG
* * *
97146030 GTTACTCCCCAAAA-ATCAAGCAGATTTTCCCTCCCATCTTTGCCATTCTAGAGATTTTGATTGC
580 GTCACTCCCCAAAAGA-CAGGCAGATTTTCCCTCCCATCTTTGCCCTTCTAGAGATTTTGATTGC
*
97146094 TATTTTTACTAATGAG
644 TA-TTTTACTAATAAG
*
97146110 AGATCATAATGCCCATTTCGTCAATTGTAAAATGTGTTCCTTAATTCCAATTTCTCCGTTCTAGT
1 -GATCATAATGCCCATTTCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGT
* * * * *
97146175 TTATTCTGGTGCATATGGCAAGAAAGAGGGTGGACATACTGCAACCCCTCCTACTCCCAAAAAGA
65 TCATTCTGGTGCAGATGGCAAGAAAGCGAGTGGACATACTGCAACCCCTCCTGCTCCCAAAAAGA
* * *
97146240 AGGCAAAGCTAGTTACTCTCCAAAAGACAAGCAGATTTTCCCTCCCATCTTTGCCCTTCTAGAGA
130 AGGCAAAGCTGGTCACTCCCCAAAAGACAAGCAGATTTTCCCTCCCATCTTTGCCCTTCTAGAGA
*
97146305 CTTTGATTGCTATTTTACTAATAAGGGATCATAATGCCCATTTCGTTAATTGTAAAATGTGTTTC
195 TTTTGATTGCTATTTTACTAATAAGGGATCATAATGCCCATTTCGTTAATTGTAAAATGTGTTTC
* * * * * *
97146370 TTACTTCCATTTTCTCCGTTCTAGTTTATTTTGGTGCAGATGGCAAGAAAGTGGGTGGATATACT
260 TTACTTCCAATTTCTCCGTTCTAGTTCATTCTGGTGCAGATGGCAAGAAAG-CGATGGACATACT
* * * *
97146435 GCAACCCCTCCTGCTCCCAAAAAGAAAGCAAAGCTGTTCACTCTCCAAAAGACAGGCAGGTTTTC
324 GCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCACTCCCCAAAAGACAGGCAGATTTTC
* * * * * * *
97146500 CCTTCCATCTTTGCCCTTCTAAAGATTTTGTTTACTATTTTACTAATGAGTGATCTTAATGCCCA
389 CCTCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTATTTTACTAATAAGAGATCATAATGCCCA
* * * * * * * *
97146565 TTTCGTTAATTGTAAAATGTGTTCATTACTTCCAATTTCTCTGTTCTAATCCATTTTGCTCCAGA
454 TTTCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTTCATTCTGGTGCAGA
* * * * ** * *
97146630 TGGCAAGCAAGTGAGTGGAAATATTGCAACCCCTATTGCTCCCAAAAAGAAGGAAAAGTTGGTCA
519 TGGCAAGAAAGCGAGTGGACATACTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCA
* * * * *
97146695 CTCCCCAAAA-ATCAAGCAAATTTTCCCTCCCATCTTTTCCATTCTAGAGATTTTGATTGCCATT
584 CTCCCCAAAAGA-CAGGCAGATTTTCCCTCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTA-T
*
97146759 TTTACTAATGATG
647 TTTACTAAT-AAG
* * *
97146772 GATCATAACGCCCATTTCGTCAATTGTAAAATGTGTTTCTTATTTCCAATTTCTCCGTTCTAGTT
1 GATCATAATGCCCATTTCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTT
* * * * * *
97146837 CATTCTGGTGTATATGGTAAGAAAGCGGGTGGACATACTACAACCCCT-TTGCTCCCAAAAAGAA
66 CATTCTGGTGCAGATGGCAAGAAAGCGAGTGGACATACTGCAACCCCTCCTGCTCCCAAAAAGAA
* * * *
97146901 GGCAAAGCTGGTCACTCCCCAAAAGACATGCAGGTTTTCTCTACCATCTTTGCCCTTCTAGAGAT
131 GGCAAAGCTGGTCACTCCCCAAAAGACAAGCAGATTTTCCCTCCCATCTTTGCCCTTCTAGAGAT
* * ** * * *
97146966 TTTGATTACAATTTTACTAATAAGATATCATATTGCCTATTTCGTTAATTGTAAAATGTGTTCCT
196 TTTGATTGCTATTTTACTAATAAGGGATCATAATGCCCATTTCGTTAATTGTAAAATGTGTTTCT
* * * * * * *
97147031 TACATCCAATTTCTCCATTCTAGTTTATTCTGATGCAGATAGCAAGAAACCGAGTGGAAATACTG
261 TACTTCCAATTTCTCCGTTCTAGTTCATTCTGGTGCAGATGGCAAGAAAGCGA-TGGACATACTG
* *
97147096 CAACCCCTCCTACTCCCAAAAAGAAGGCAAAGCTGGTCACTCCCCAAAAGACAGGAAGATTTTCC
325 CAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCACTCCCCAAAAGACAGGCAGATTTTCC
* * * * ** * * *
97147161 CTCCCATCTTTAACCCTTTTAGAGCTTTTAATTGCTATTTTACTAATGTGGGATCATAATACCTA
390 CTCCCATCTTT-GCCCTTCTAGAGATTTTGATTGCTATTTTACTAATAAGAGATCATAATGCCCA
* ***
97147226 TTTCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCATTCTAGTTCATTCTGGAATAGA
454 TTTCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTTCATTCTGGTGCAGA
* * * * * *
97147291 TAGCAAGAAATC-AGGTAGAAATATTGCAGCCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTC
519 TGGCAAGAAAGCGA-GTGGACATACTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTC
* * * * *
97147355 ACTCCCCAAAAGATAGACAGATTTTTCATCCCATCTTTGTCCTTCTAGAGATTTTGATTGCTATT
583 ACTCCCCAAAAGACAGGCAGATTTTCCCTCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTATT
97147420 TTACTAATAAGG
648 TTACTAATAA-G
* * *
97147432 GATCATAATGCCCATTTCGTCAATTGTAAAATGTGTTTCTTATTTCCAATTTCTCCGTTTTAGTT
1 GATCATAATGCCCATTTCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTT
* *
97147497 CACTCTGGTGCAGATGGTAAGAAAGCGAGTGGACATACTGCAACCCCTCCTGCTCCCAAAAAGAA
66 CATTCTGGTGCAGATGGCAAGAAAGCGAGTGGACATACTGCAACCCCTCCTGCTCCCAAAAAGAA
* * ** ** *
97147562 GGCAAAGCTGGTCACTCCCGAAAAGACAGGCAGCCTTTCATTCCCATCTTT-CCCTT-TATAGAT
131 GGCAAAGCTGGTCACTCCCCAAAAGACAAGCAGATTTTCCCTCCCATCTTTGCCCTTCTAGAGAT
* ** * * **
97147625 TTTGATTGCTATTTTACTAATGAGGGATCATAATATCTATTTCGCTAATTGTAAAACATG-TTCT
196 TTTGATTGCTATTTTACTAATAAGGGATCATAATGCCCATTTCGTTAATTGTAAAATGTGTTTCT
* ** ** * * *
97147689 GCACTTTTAATTTCTCTATTCTAGTTCATTCTGGTACAGATGGCAAAAAAGTGAGTGGACATACT
261 -TACTTCCAATTTCTCCGTTCTAGTTCATTCTGGTGCAGATGGCAAGAAAGCGA-TGGACATACT
* * * * *
97147754 ACAACCTCTCCTGCTCCCAAAAAGAAGGCAAATCTGGTCACTCCCCAAAA-TCAAGCAGATTTTC
324 GCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCACTCCCCAAAAGACAGGCAGATTTTC
* * * *
97147818 CCTCCTATCTTTGCCATTCTAGAGATTTTGATTGCTATTTTTACTAATTAGGGATCATAATGCCC
389 CCTCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTA-TTTTACTAATAAGAGATCATAATGCCC
* *
97147883 ATTTCGTCAATTGTAAAATGTGTTCCTTACTTCTAATTTCTCCGTTCTAGTTCATTCTGGTGCAT
453 ATTTCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTTCATTCTGGTGCAG
** * *
97147948 ATGGCAAGAAAGCTG-GAAGACATACTACAACCCCTCCTACTCCCAAAAAGAAGGCAAAGCTGGT
518 ATGGCAAGAAAGC-GAGTGGACATACTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGT
* * * * * *
97148012 CACTCCCCAAAAGACAAGTA-AGTTTTCTCTACCATCTTTGTCATTCTAGAGATTTTGATTGCTA
582 CACTCCCCAAAAGACAGGCAGA-TTTTCCCTCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTA
*
97148076 TTTTACTAATGAG
646 TTTTACTAATAAG
* * ** * * *
97148089 AGATCATAATACCCATTTCGTTAATTGTAAAATGTGTTTTTTACATCCAATTTCTCCCTTTTTAG
1 -GATCATAATGCCCATTTCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCT-CCGTTCTAG
* * * * * *
97148154 TTCATTTTGGTGCAGATAGCAAGAAAGCGAGTGGACATACTGCAACTCCTCCTACTTCTAAAAAG
64 TTCATTCTGGTGCAGATGGCAAGAAAGCGAGTGGACATACTGCAACCCCTCCTGCTCCCAAAAAG
* * *
97148219 AAGGCAAAGCTGGTCACT-CCCAAAAGAC-GGCAGATTTTTCCTCCCATCTTTGCCCTTTTAGAG
129 AAGGCAAAGCTGGTCACTCCCCAAAAGACAAGCAGATTTTCCCTCCCATCTTTGCCCTTCTAGAG
* * * * * * *
97148282 CTTTTGATTGTTATTTTACTAATGAGGGATCATATTACCGATTTC-TTCAATTGTAAAATTTG-T
194 ATTTTGATTGCTATTTTACTAATAAGGGATCATAATGCCCATTTCGTT-AATTGTAAAATGTGTT
* * * * * *
97148345 TCTTTACTTCCAATTTCTCCGTTCTAGTTTATTCTGGTACAGATAGCAAGAAATCGGGTGGAAAT
258 TC-TTACTTCCAATTTCTCCGTTCTAGTTCATTCTGGTGCAGATGGCAAGAAAGC-GATGGACAT
* * * * * * *
97148410 ATTGCAACCCTTCCTGCTCCCAAAAAGAAGGCAAAGTTGTTTACTCCCCAAAAAACAGGCAGGTT
321 ACTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCACTCCCCAAAAGACAGGCAGATT
* * * * *
97148475 TCCCCTCCTATCTTTGCCCTTCTAGAGATTTTGATTGTTATTTTACTAATGAGGGATCATAATGC
386 TTCCCTCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTATTTTACTAATAAGAGATCATAATGC
* * *
97148540 CCATTTCTTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAATTCATTCTAGTGC
451 CCATTTCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTTCATTCTGGTGC
* * * ** *
97148605 AGATGGCAAGAAAGC-AGGTGGACGTATTGCAACCCCTCCTGCTCCCATAAAGAAAAACAAAGTT
516 AGATGGCAAGAAAGCGA-GTGGACATACTGCAACCCCTCCTGCTCCCAAAAAG-AAGGCAAAGCT
* * *
97148669 GGTCACTCCCCAAAAGACAGGCAGATTTTCCATCTCATCTTTGTCCTTCTAGAGATTTTGATTGC
579 GGTCACTCCCCAAAAGACAGGCAGATTTTCCCTCCCATCTTTGCCCTTCTAGAGATTTTGATTGC
97148734 TATTTTACTAATAAGG
644 TATTTTACTAATAA-G
* * * * *
97148750 GATCATAATACCAATTTCGTCAATTGTAAAATGTGTTCCTTATTTCCAATTTCTCCATTTTAGTT
1 GATCATAATGCCCATTTCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTT
* *
97148815 CATTCTGGTACAGATGGCAAGAAAGCGAGTGGACATACTGCAACCCCTCCTGCTCCCAAAAATAA
66 CATTCTGGTGCAGATGGCAAGAAAGCGAGTGGACATACTGCAACCCCTCCTGCTCCCAAAAAGAA
* * *** * *** * * *
97148880 CGCAAAGTTGGTCACTCTTGAAAAGACAGGCATCCTTTCCTTCCCATCTTT-TCCTTCTAGGGAT
131 GGCAAAGCTGGTCACTCCCCAAAAGACAAGCAGATTTTCCCTCCCATCTTTGCCCTTCTAGAGAT
* * ** *
97148944 TTTGATTGTTATTTTACTAATGAGGGATCATAATGCCTGTTTCGTTAATTGTAAAATATG-TTCT
196 TTTGATTGCTATTTTACTAATAAGGGATCATAATGCCCATTTCGTTAATTGTAAAATGTGTTTCT
* ** *
97149008 GTACTTTCAATTTCTTAAG-TCTAGTTCATTCTGGTGCAGATGGCAAAAAAGCGAGTGGACATAC
261 -TACTTCCAATTTC-TCCGTTCTAGTTCATTCTGGTGCAGATGGCAAGAAAGCGA-TGGACATAC
* * * * *
97149072 TACAACCCCTCCTACTCCCAAAAAGAAGGCAAAGCTAGTCACTCCCCAAAAGACAAGCAGGTTTT
323 TGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCACTCCCCAAAAGACAGGCAGATTTT
* ** * * **
97149137 CTCTGTCATCTTTGCCCTTCTA-ATGATTTTGATTGCTATCTTACTAATGAGAGATCATAATTTC
388 CCCTCCCATCTTTGCCCTTCTAGA-GATTTTGATTGCTATTTTACTAATAAGAGATCATAATGCC
* * *
97149201 CATTTCGTTAATTGTAAAATGTGTTCCTTACTTTCAATTTCTCCATTCTAGTTCATTCTGGTGCA
452 CATTTCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTTCATTCTGGTGCA
** * * *
97149266 GATAACAAGAAAGCAAGTGGACATACTGCAACCCCTCCTGCTCCTAAAAAGAAGGCAAAGCTTGT
517 GATGGCAAGAAAGCGAGTGGACATACTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGT
* *
97149331 CACT-CCCAAAAGATAGGCAGATTTTCCCTCCCATCTTTGCCCTTTTAGAGATTTTGATTGCTAT
582 CACTCCCCAAAAGACAGGCAGATTTTCCCTCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTAT
97149395 TTTACTAATAAGG
647 TTTACTAATAA-G
* * *
97149408 GATTATAATGCCCATTTCTTCAATTGTAAAATGTGTTCCTTACTTCCAATTTATCCGTTCTAGTT
1 GATCATAATGCCCATTTCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTT
* * * * *
97149473 CATTCTGATGTAGATGGCAATAAAGCGGGTAGACATACTGCAACCCCTCCTGCTCCCAAAAAGAA
66 CATTCTGGTGCAGATGGCAAGAAAGCGAGTGGACATACTGCAACCCCTCCTGCTCCCAAAAAGAA
* * * * * * *
97149538 GGCAAAGCTAGTCACTCCCCAAAAGATAGGAAGATTTTCCCTCCAATCTTTGCCATTTTAGAGAT
131 GGCAAAGCTGGTCACTCCCCAAAAGACAAGCAGATTTTCCCTCCCATCTTTGCCCTTCTAGAGAT
* * * * *
97149603 TTTAATTGTTATTTTACTAATAAGGGATCATAATGCCCATTTCGTCAATTGTAAAATTTGTTCCT
196 TTTGATTGCTATTTTACTAATAAGGGATCATAATGCCCATTTCGTTAATTGTAAAATGTGTTTCT
* * *
97149668 TACTTCCAATTTATCCGTTCTAGTTCATTCTGATGCAGATGGCAAGAAAGCGGGTGGACATACTG
261 TACTTCCAATTTCTCCGTTCTAGTTCATTCTGGTGCAGATGGCAAGAAAGC-GATGGACATACTG
* * * *
97149733 CAACCCCTCCTGCTCCCAAAAAGAAGGCAACGCTGGTTACTCCCCAAAAGATAGGCAGATTTTCG
325 CAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCACTCCCCAAAAGACAGGCAGATTTTCC
* * * * *
97149798 CTCCCATTTTTGCCCTTCTAGAGA-ATTGATTTCTATTTTACTAATGAGATATCATAATGCCCAT
390 CTCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTATTTTACTAATAAGAGATCATAATGCCCAT
** ** * * *
97149862 TTTATTTATTGTAAAATGTGTTCCTTACTTCCAATTTCTTCGATCTAATTCATTCTGGTGCAGAT
455 TTCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTTCATTCTGGTGCAGAT
* * * *
97149927 GGCAAGAAAGCGAGTGGACATATTGCAACCCCTCCTACTCCCAAAAATAAGGCAAAACTGGTCAC
520 GGCAAGAAAGCGAGTGGACATACTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCAC
* *
97149992 TCACGAAAAGACA
585 TCCCCAAAAGACA
97150005 AGAAGGCTTT
Statistics
Matches: 10265, Mismatches: 1927, Indels: 769
0.79 0.15 0.06
Matches are distributed among these distances:
654 2 0.00
655 8 0.00
656 463 0.05
657 344 0.03
658 1038 0.10
659 1617 0.16
660 3645 0.36
661 1579 0.15
662 651 0.06
663 162 0.02
664 3 0.00
665 4 0.00
666 6 0.00
667 6 0.00
668 10 0.00
669 3 0.00
670 5 0.00
671 5 0.00
672 22 0.00
673 16 0.00
674 21 0.00
675 36 0.00
676 32 0.00
677 20 0.00
678 7 0.00
680 1 0.00
681 2 0.00
682 1 0.00
683 1 0.00
684 1 0.00
686 7 0.00
687 2 0.00
688 10 0.00
689 6 0.00
690 6 0.00
692 2 0.00
693 1 0.00
694 1 0.00
695 1 0.00
696 1 0.00
697 20 0.00
698 6 0.00
699 6 0.00
700 15 0.00
701 14 0.00
702 6 0.00
703 11 0.00
704 13 0.00
705 3 0.00
706 13 0.00
707 9 0.00
708 8 0.00
709 2 0.00
710 2 0.00
711 2 0.00
713 2 0.00
714 2 0.00
715 2 0.00
716 8 0.00
717 9 0.00
718 13 0.00
719 3 0.00
720 11 0.00
721 11 0.00
722 5 0.00
723 9 0.00
724 17 0.00
725 7 0.00
726 1 0.00
727 21 0.00
728 4 0.00
729 1 0.00
731 1 0.00
732 1 0.00
733 2 0.00
734 1 0.00
735 5 0.00
736 8 0.00
737 9 0.00
738 5 0.00
739 4 0.00
742 1 0.00
744 3 0.00
745 1 0.00
747 14 0.00
748 25 0.00
749 32 0.00
750 42 0.00
751 14 0.00
752 20 0.00
753 10 0.00
754 5 0.00
755 5 0.00
756 4 0.00
757 10 0.00
758 4 0.00
759 5 0.00
760 4 0.00
761 2 0.00
762 4 0.00
763 1 0.00
764 3 0.00
765 16 0.00
ACGTcount: A:0.29, C:0.22, G:0.15, T:0.33
Consensus pattern (658 bp):
GATCATAATGCCCATTTCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTT
CATTCTGGTGCAGATGGCAAGAAAGCGAGTGGACATACTGCAACCCCTCCTGCTCCCAAAAAGAA
GGCAAAGCTGGTCACTCCCCAAAAGACAAGCAGATTTTCCCTCCCATCTTTGCCCTTCTAGAGAT
TTTGATTGCTATTTTACTAATAAGGGATCATAATGCCCATTTCGTTAATTGTAAAATGTGTTTCT
TACTTCCAATTTCTCCGTTCTAGTTCATTCTGGTGCAGATGGCAAGAAAGCGATGGACATACTGC
AACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCACTCCCCAAAAGACAGGCAGATTTTCCC
TCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTATTTTACTAATAAGAGATCATAATGCCCATT
TCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTTCATTCTGGTGCAGATG
GCAAGAAAGCGAGTGGACATACTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCACT
CCCCAAAAGACAGGCAGATTTTCCCTCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTATTTTA
CTAATAAG
Found at i:97142377 original size:219 final size:220
Alignment explanation
Indices: 97141807--97150004 Score: 9702
Period size: 220 Copynumber: 37.3 Consensus size: 220
97141797 AAAATCAGTA
* * * * *
97141807 GACATACTGTAACCCCTCCTGCTCTCAAAAAGAAGACAAAGCTGGTCACTTCCCAAAAGACAGGA
1 GACATACTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCACTCCCCAAAAGACAGGC
* * * *
97141872 AGATTTTCCCTCTCATCTTTGCCCCTCTAGAGAATTTGATTGCTATTTTACTAATAAGGGATCAT
66 AGATTTTCCCTCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTATTTTACTAATGAGGGATCAT
* * * * * * *
97141937 AATGCCTATTTCGTCAATTGTAAAATGTATTTCTTACTTCAAATTTCACTGTTCTAGTTTATTCT
131 AATGCCCATTTCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTTCATTCT
*
97142002 GGTGCAGATGGCAAGAAAGCGTA-TA
196 GGTGCAGATGGCAAGAAAGCG-AGTG
* * * * * * *
97142027 AACGTACTGCAACCCCTTCTACTCCCAAAAAGAAGGTAAAGCTGGCCACTCCCCAAAAGAAAGGC
1 GACATACTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCACTCCCCAAAAGACAGGC
* * * * * *
97142092 AGATTTTCCCACCCATCTTTGCCTTTTTAGAGATTTTGATTGCCATTTTACTAATAAAGGATCAT
66 AGATTTTCCCTCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTATTTTACTAATGAGGGATCAT
* * * *
97142157 AATGCCCATTTCATCAATTGTAAAATGTGTTCCTTACTTCTAATTTCTCCATTCTTGTTCATTCT
131 AATGCCCATTTCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTTCATTCT
* *
97142222 GGTGCAGATGGCAAGAAAGGGGGTG
196 GGTGCAGATGGCAAGAAAGCGAGTG
** * * * * **
97142247 GACA-ACTGCAACCCCTTTTGCTCCCAAAAAGAAGGAAAAGCTAGTCACTCCCTAAAAGATAGAA
1 GACATACTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCACTCCCCAAAAGACAGGC
* * * * * * *
97142311 AGATTTTCCCTCCTATCTTTACCTTTCTAAAGATTTTGATTACTATTTTACTAATAAGGAATCAT
66 AGATTTTCCCTCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTATTTTACTAATGAGGGATCAT
*
97142376 AATGCCCATTTCGTCAATTGTAAAATATGTTCCTTACTTCCAATTTCTCCGTTCTAGTTCATTCT
131 AATGCCCATTTCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTTCATTCT
** ** * * *
97142441 GGTG-TTATAACAAAAAAGCGGGTA
196 GGTGCAGATGGCAAGAAAGCGAGTG
* * * * * * * *
97142465 GACCTACTACAACCCCTCTTGCTCCCAAAAAGAAGGCAAAGCTAGTCACACTCTAAAAGACAAGC
1 GACATACTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCACTCCCCAAAAGACAGGC
* * *
97142530 AGATTTTCCCTCCTATCTTTGCCCTTTTAGAGATTTTGATTGCTATTTTACTAATAAGGGATCAT
66 AGATTTTCCCTCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTATTTTACTAATGAGGGATCAT
* * * * * * *
97142595 AGTGCCCATTTCGTTAATTGTAAAATGTGTTTCTTACTTCTATTTTCTCCTTTCTAGTTCATTTT
131 AATGCCCATTTCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTTCATTCT
* * *
97142660 GGTACAGATGGCAAGAAAGTGAGCG
196 GGTGCAGATGGCAAGAAAGCGAGTG
* * * * *
97142685 GACATACTGCAACCGCTCTTGCTCCAAAAAAGAAGGCAAAGCTGTTCACTCCCCAAAAG-CTAGA
1 GACATACTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCACTCCCCAAAAGAC-AGG
* * * * *
97142749 CAGGTTTTCCCTCCCATCTTTGCCCTTCTAGAGATTTTAATTACTATTTTACTAATTAGTGATCA
65 CAGATTTTCCCTCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTATTTTACTAATGAGGGATCA
* * * * * *
97142814 TAATGCCCATTTCATTAATTGTAAAATATGTTCCTGACTTCCAATTTCTCTGTTCTAGTCCATTC
130 TAATGCCCATTTCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTTCATTC
* * *
97142879 TGATGTAGATGACAAGAAAGCGAGTG
195 TGGTGCAGATGGCAAGAAAGCGAGTG
* * * * *
97142905 GACATACTGCAACCCCTCCTGCTCCCAAAAAGAATGCAAAGCTAGTCACTCCCGAAAAGAAAGGT
1 GACATACTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCACTCCCCAAAAGACAGGC
** * * * * * *
97142970 AGCCTTTCCTTTCCATCTTT-CCCTTCCAGAGATGTTAATTGCTATTTTACTAATGAAGGATCAT
66 AGATTTTCCCTCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTATTTTACTAATGAGGGATCAT
*** * * ** ** ** *
97143034 AATGCATGTTTCGTTAATTTTAAAATACGTT-CTGTACTTTTAATTTCTCTATTGTAGTTCATTC
131 AATGCCCATTTCGTCAATTGTAAAATGTGTTCCT-TACTTCCAATTTCTCCGTTCTAGTTCATTC
*
97143098 TGGTGCAGATGGCAAAAAAGCGAGTG
195 TGGTGCAGATGGCAAGAAAGCGAGTG
** * **
97143124 GACATACTATAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCACTCCTCAAAA-ATCAAA
1 GACATACTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCACTCCCCAAAAGA-CAGG
* * * * * *
97143188 CAGATTTTCCCTCCCTTCTTTGACATTCTAGAGATTTTTATTGCTATTTTTACTAATGATGAATC
65 CAGATTTTCCCTCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTA-TTTTACTAATGAGGGATC
* * * *
97143253 ATAATGCCCATTTCGTCAATTGTAAAATATGTTTCTTATTTCCAATTTCTCCGTTCTAGTTTATT
129 ATAATGCCCATTTCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTTCATT
* * * * *
97143318 CTGGTGCATATGGTAAAAAAGTGGGTG
194 CTGGTGCAGATGGCAAGAAAGCGAGTG
* * * * *
97143345 GACATACTACAATCCCTCTTTCACCCAAAAAGAAGGCAAAGCTGGTCACTCCCCAAAAGACAGGC
1 GACATACTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCACTCCCCAAAAGACAGGC
* * * * * **
97143410 AGGTTTTCTCTACCATCTTTACCCTTCTAAAGATTTTGATTGCTATTTTACTAATGAGATATCAT
66 AGATTTTCCCTCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTATTTTACTAATGAGGGATCAT
* * *
97143475 AATGCCCATTTCGAT-AATTGTAAAATGTGTTCCTTACATCCAATTTCTCCATTCTAGTTTATTC
131 AATGCCCATTTCG-TCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTTCATTC
* * * *
97143539 TGCG-ACAGATAGCACGAAAGTGAGTG
195 TG-GTGCAGATGGCAAGAAAGCGAGTG
* * * * * * * * *
97143565 GATATACTGTAACCCATCCTGTTCCCAAAAAGAATGCAAAGCTGGTTACTCCCTAAAAAAATAGG
1 GACATACTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCACTCCC-CAAAAGACAGG
* * * * ** *
97143630 CAGATTTTCTCTCCTATCTTTAACCCTTTTAGACCTTTTGATTGCTATTTTACTAATGTGGGATC
65 CAGATTTTCCCTCCCATCTTT-GCCCTTCTAGAGATTTTGATTGCTATTTTACTAATGAGGGATC
97143695 ATAA-GTCCCATTTCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTTCAT
129 ATAATG-CCCATTTCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTTCAT
* ** * *
97143759 TTTGGAACAGATAGCAAGAAATCGAGTG
193 TCTGGTGCAGATGGCAAGAAAGCGAGTG
* * * * *
97143787 GATATATTGTAACCCCTTCTGCTCCCAAAAAGAAGGCAAAGCTGGTCAC-CCCCAAAAGACAGAC
1 GACATACTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCACTCCCCAAAAGACAGGC
* * ** * *
97143851 AGATTTTCCATCCCATCATTATCCTTCTAGAGATTTTGATTGCTATTTTACTAATAAGAGATCAT
66 AGATTTTCCCTCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTATTTTACTAATGAGGGATCAT
*
97143916 AATGCCCATTTCGTCAATTGTAAAATGTGTTCCTTATTTCCAATTTCTCCGTGT-TAGTTCATTC
131 AATGCCCATTTCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGT-TCTAGTTCATTC
* *
97143980 TGTTGCAGATGGCAAGAAAGCAAGTG
195 TGGTGCAGATGGCAAGAAAGCGAGTG
* * * *
97144006 GACGTACTGCAACCCCTCCTGCTTCCAAAAAGAAGGCAAAGCTGGTTACTCCCAAAAAGACAGGC
1 GACATACTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCACTCCCCAAAAGACAGGC
** * * * * *
97144071 AGCCTTTCCTTTCCATCTTT-CCCTTCTAGAGATATTGATTGCTAGTTTACTAATGAGAGATCAT
66 AGATTTTCCCTCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTATTTTACTAATGAGGGATCAT
* * * ** ** *
97144135 AATGCCTATTTCGTTAATTGTAAAATATGTT-CTATACTTTTAATTTCTCTATTTTAGTTCATTC
131 AATGCCCATTTCGTCAATTGTAAAATGTGTTCCT-TACTTCCAATTTCTCCGTTCTAGTTCATTC
*
97144199 TGGTGCAGATGGCAAAAAAGCGAGTG
195 TGGTGCAGATGGCAAGAAAGCGAGTG
* ** * * *
97144225 AACATACTAAAACCCCTCCTACCCCCAAAAAGAAGGCAAAGCTGGTCACTCCCCAAAA-ATCAAG
1 GACATACTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCACTCCCCAAAAGA-CAGG
* * **
97144289 CAGATTTTCCCTTCCATCTTTGCCATTCTAGAGATTTTGATTGCTATTTTTACTAATGAGATATC
65 CAGATTTTCCCTCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTA-TTTTACTAATGAGGGATC
* * *
97144354 ATAATGCCAATTTCGTCAATTTTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTTTATT
129 ATAATGCCCATTTCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTTCATT
* *
97144419 CTGGTGCATG-TAGCAAGAAAGTG-GTTG
194 CTGGTGCA-GATGGCAAGAAAGCGAG-TG
** * * * *** * *
97144446 GACATACTTTAACCCCTCCTACTCTCAAAAAGAAGGCAAAGCTAGTCACTTTTCAAAAGATAAGC
1 GACATACTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCACTCCCCAAAAGACAGGC
* ** *
97144511 AAATTTTTTCTCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTATTTTACTAATAAGGGATCAT
66 AGATTTTCCCTCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTATTTTACTAATGAGGGATCAT
* * * * * * *
97144576 AAGGCCCATTTCGTTAATTGTAAAATGTGTTTCTTACTTCTATTTTCTCCGTTCTAGTTTATTTT
131 AATGCCCATTTCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTTCATTCT
** *
97144641 AATGCAGATGGCAAGAAAGTG-GTG
196 GGTGCAGATGGCAAGAAAGCGAGTG
* * * * *
97144665 GACATAATACAACCCCTCCTGCTCCGAAAAAGAAGGCAAAGCTGTTCACTCCCCAAAAGATAGGC
1 GACATACTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCACTCCCCAAAAGACAGGC
* *
97144730 AGGTTTTCCCTCCCATCTTTGCCCTTCTAGAGATTTTGATTACTATTTTACTAATG-GGTGATCA
66 AGATTTTCCCTCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTATTTTACTAATGAGG-GATCA
* * * *
97144794 TAATGCCCATTTCGTTAATTATAAAATGTGTTCCTTACTTCCAATTTCTCTGTTCTAATTCATTC
130 TAATGCCCATTTCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTTCATTC
*
97144859 TGGTGCAGATGGCAAGAAAACGAGTG
195 TGGTGCAGATGGCAAGAAAGCGAGTG
* * * * * * *
97144885 GACATACTGTAACCCCTCTTGCTCCCAAAAAGAAGGCAAAGTTGCTCATTCCCCGAAAA-TCAAG
1 GACATACTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCACTCCCC-AAAAGACAGG
* * * * *
97144949 CAGTTTTTCCCTCCCATCTTTGCCATTCTAGAGATTTTGATTGCTATTTTTACTAATGATGAATT
65 CAGATTTTCCCTCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTA-TTTTACTAATGAGGGATC
* * * * *
97145014 ATAATGCCTATTTCGTCAATTGTAAAATATGTTCTTTATTTCCAATTTCTCCGTTCTAGTTTATT
129 ATAATGCCCATTTCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTTCATT
*
97145079 CTGGTGCATATGGCAAGAAAGCG-GTTG
194 CTGGTGCAGATGGCAAGAAAGCGAG-TG
* * * *
97145106 GACATACTACAACCCTTCCTGCACCCAAAAAGAAGGCAAAGCTGGTCACTCCCCAAAAGACATGC
1 GACATACTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCACTCCCCAAAAGACAGGC
* * * * * * *
97145171 AGGTTTTCTCTACCATTTTTACCCTTCTATAGATTTTGATTGCTATTTTACTAATGAGAGATCAT
66 AGATTTTCCCTCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTATTTTACTAATGAGGGATCAT
* * * *
97145236 AATGCCCATTTCGTTAATTGTAAAATGTGTTCCTTACATCCAATTTCTCCATTCTAGTTTATTCT
131 AATGCCCATTTCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTTCATTCT
* **
97145301 GATGCAGATAACAAGAAAGCGAGTG
196 GGTGCAGATGGCAAGAAAGCGAGTG
* * * * * *
97145326 GACATACTGCAACCCATCCTACTCCCAAAAAGAAGGCAAAGCTAGTCACTTCCCAAAAGACAAGT
1 GACATACTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCACTCCCCAAAAGACAGGC
* * * * * * *
97145391 AAATTTTCCCTCTCATCTTTAACCCTTTTAGAGTTTTTGATTGCTATTTTACTAATGTGGGATAA
66 AGATTTTCCCTCCCATCTTT-GCCCTTCTAGAGATTTTGATTGCTATTTTACTAATGAGGGATCA
* * * *
97145456 TAATTCCCATTTCGTCAATTGTAAAATGCGTTCCTTACTTCCAATTTCTCCGTTCTAATTTATTC
130 TAATGCCCATTTCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTTCATTC
*** * * *
97145521 TGGAATAGATAGCAAGAAATC-AGGTA
195 TGGTGCAGATGGCAAGAAAGCGA-GTG
* * ** * *
97145547 GACATATTGCAACCCCTCCTACTCTAAAAAAGAAGGCAAAGCTGGTCACTCCCCAAAAAACAGAC
1 GACATACTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCACTCCCCAAAAGACAGGC
* *
97145612 AGATTTTCCATCCCATCTTTGTCCTTCTAGAGATTTTGATTGCTATTTTACTAATGAGGGATCAT
66 AGATTTTCCCTCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTATTTTACTAATGAGGGATCAT
* * *
97145677 AATGCCCATTTCAGT-AATTGTAAAATATGTTCCTTATTTCCAATTTCTCCGTTTTAGTTCATTC
131 AATGCCCATTTC-GTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTTCATTC
*
97145741 TGGTGCAGATGGTAAGAAAGCGAGTG
195 TGGTGCAGATGGCAAGAAAGCGAGTG
* *
97145767 GACATACTTCAA-CCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCACTCCCGAAAAGACAGGC
1 GACATACTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCACTCCCCAAAAGACAGGC
** * * *
97145831 AGCCTTTCCTTCCCATCTTT-CCCTTCTAGAGATTTTAATTGCTATTTTACTAATAAGGGATCAT
66 AGATTTTCCCTCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTATTTTACTAATGAGGGATCAT
** * * * * ** ***
97145895 AATGCCTGTTTTGTTAATTATAAAATATGTT-CTGTACTTTTAATTTCTGTATTCTAGTTCATTC
131 AATGCCCATTTCGTCAATTGTAAAATGTGTTCCT-TACTTCCAATTTCTCCGTTCTAGTTCATTC
** * *
97145959 TGGTGCAGATGATTAAAAAAGCAAGTG
195 TGGTGCAGATG-GCAAGAAAGCGAGTG
* * * * * *
97145986 GACATACTGCAATCCCTCCTGCTCCAAAAAAGAAGGCAAAGTTAGTTACTCCCCAAAA-ATCAAG
1 GACATACTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCACTCCCCAAAAGA-CAGG
* *
97146050 CAGATTTTCCCTCCCATCTTTGCCATTCTAGAGATTTTGATTGCTATTTTTACTAATGAGAGATC
65 CAGATTTTCCCTCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTA-TTTTACTAATGAGGGATC
* *
97146115 ATAATGCCCATTTCGTCAATTGTAAAATGTGTTCCTTAATTCCAATTTCTCCGTTCTAGTTTATT
129 ATAATGCCCATTTCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTTCATT
* * *
97146180 CTGGTGCATATGGCAAGAAAGAGGGTG
194 CTGGTGCAGATGGCAAGAAAGCGAGTG
* * * * *
97146207 GACATACTGCAACCCCTCCTACTCCCAAAAAGAAGGCAAAGCTAGTTACTCTCCAAAAGACAAGC
1 GACATACTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCACTCCCCAAAAGACAGGC
* *
97146272 AGATTTTCCCTCCCATCTTTGCCCTTCTAGAGACTTTGATTGCTATTTTACTAATAAGGGATCAT
66 AGATTTTCCCTCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTATTTTACTAATGAGGGATCAT
* * * * *
97146337 AATGCCCATTTCGTTAATTGTAAAATGTGTTTCTTACTTCCATTTTCTCCGTTCTAGTTTATTTT
131 AATGCCCATTTCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTTCATTCT
* *
97146402 GGTGCAGATGGCAAGAAAGTGGGTG
196 GGTGCAGATGGCAAGAAAGCGAGTG
* * * *
97146427 GATATACTGCAACCCCTCCTGCTCCCAAAAAGAAAGCAAAGCTGTTCACTCTCCAAAAGACAGGC
1 GACATACTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCACTCCCCAAAAGACAGGC
* * * * * * *
97146492 AGGTTTTCCCTTCCATCTTTGCCCTTCTAAAGATTTTGTTTACTATTTTACTAATGAGTGATCTT
66 AGATTTTCCCTCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTATTTTACTAATGAGGGATCAT
* * * * * *
97146557 AATGCCCATTTCGTTAATTGTAAAATGTGTTCATTACTTCCAATTTCTCTGTTCTAATCCATTTT
131 AATGCCCATTTCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTTCATTCT
* * * *
97146622 GCTCCAGATGGCAAGCAAGTGAGTG
196 GGTGCAGATGGCAAGAAAGCGAGTG
* * ** * * *
97146647 GAAATATTGCAACCCCTATTGCTCCCAAAAAGAAGGAAAAGTTGGTCACTCCCCAAAA-ATCAAG
1 GACATACTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCACTCCCCAAAAGA-CAGG
* * * * *
97146711 CAAATTTTCCCTCCCATCTTTTCCATTCTAGAGATTTTGATTGCCATTTTTACTAATGATGGATC
65 CAGATTTTCCCTCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTA-TTTTACTAATGAGGGATC
* * *
97146776 ATAACGCCCATTTCGTCAATTGTAAAATGTGTTTCTTATTTCCAATTTCTCCGTTCTAGTTCATT
129 ATAATGCCCATTTCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTTCATT
* * * *
97146841 CTGGTGTATATGGTAAGAAAGCGGGTG
194 CTGGTGCAGATGGCAAGAAAGCGAGTG
* * *
97146868 GACATACTACAACCCCT-TTGCTCCCAAAAAGAAGGCAAAGCTGGTCACTCCCCAAAAGACATGC
1 GACATACTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCACTCCCCAAAAGACAGGC
* * * * * * **
97146932 AGGTTTTCTCTACCATCTTTGCCCTTCTAGAGATTTTGATTACAATTTTACTAATAAGATATCAT
66 AGATTTTCCCTCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTATTTTACTAATGAGGGATCAT
* * * * * *
97146997 ATTGCCTATTTCGTTAATTGTAAAATGTGTTCCTTACATCCAATTTCTCCATTCTAGTTTATTCT
131 AATGCCCATTTCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTTCATTCT
* * *
97147062 GATGCAGATAGCAAGAAACCGAGTG
196 GGTGCAGATGGCAAGAAAGCGAGTG
* * *
97147087 GAAATACTGCAACCCCTCCTACTCCCAAAAAGAAGGCAAAGCTGGTCACTCCCCAAAAGACAGGA
1 GACATACTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCACTCCCCAAAAGACAGGC
* * * * *
97147152 AGATTTTCCCTCCCATCTTTAACCCTTTTAGAGCTTTTAATTGCTATTTTACTAATGTGGGATCA
66 AGATTTTCCCTCCCATCTTT-GCCCTTCTAGAGATTTTGATTGCTATTTTACTAATGAGGGATCA
* * *
97147217 TAATACCTATTTCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCATTCTAGTTCATTC
130 TAATGCCCATTTCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTTCATTC
*** * * *
97147282 TGGAATAGATAGCAAGAAATC-AGGTA
195 TGGTGCAGATGGCAAGAAAGCGA-GTG
* * * * *
97147308 GAAATATTGCAGCCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCACTCCCCAAAAGATAGAC
1 GACATACTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCACTCCCCAAAAGACAGGC
* * * *
97147373 AGATTTTTCATCCCATCTTTGTCCTTCTAGAGATTTTGATTGCTATTTTACTAATAAGGGATCAT
66 AGATTTTCCCTCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTATTTTACTAATGAGGGATCAT
* * * *
97147438 AATGCCCATTTCGTCAATTGTAAAATGTGTTTCTTATTTCCAATTTCTCCGTTTTAGTTCACTCT
131 AATGCCCATTTCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTTCATTCT
*
97147503 GGTGCAGATGGTAAGAAAGCGAGTG
196 GGTGCAGATGGCAAGAAAGCGAGTG
*
97147528 GACATACTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCACTCCCGAAAAGACAGGC
1 GACATACTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCACTCCCCAAAAGACAGGC
** ** *
97147593 AGCCTTTCATTCCCATCTTT-CCCTT-TATAGATTTTGATTGCTATTTTACTAATGAGGGATCAT
66 AGATTTTCCCTCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTATTTTACTAATGAGGGATCAT
** * ** * ** **
97147656 AATATCTATTTCG-CTAATTGTAAAACATGTT-CTGCACTTTTAATTTCTCTATTCTAGTTCATT
131 AATGCCCATTTCGTC-AATTGTAAAATGTGTTCCT-TACTTCCAATTTCTCCGTTCTAGTTCATT
* * *
97147719 CTGGTACAGATGGCAAAAAAGTGAGTG
194 CTGGTGCAGATGGCAAGAAAGCGAGTG
* * * * *
97147746 GACATACTACAACCTCTCCTGCTCCCAAAAAGAAGGCAAATCTGGTCACTCCCCAAAA-TCAAGC
1 GACATACTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCACTCCCCAAAAGACAGGC
* * *
97147810 AGATTTTCCCTCCTATCTTTGCCATTCTAGAGATTTTGATTGCTATTTTTACTAATTAGGGATCA
66 AGATTTTCCCTCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTA-TTTTACTAATGAGGGATCA
*
97147875 TAATGCCCATTTCGTCAATTGTAAAATGTGTTCCTTACTTCTAATTTCTCCGTTCTAGTTCATTC
130 TAATGCCCATTTCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTTCATTC
* **
97147940 TGGTGCATATGGCAAGAAAGCTG-GAA
195 TGGTGCAGATGGCAAGAAAGC-GAGTG
* * * *
97147966 GACATACTACAACCCCTCCTACTCCCAAAAAGAAGGCAAAGCTGGTCACTCCCCAAAAGACAAGT
1 GACATACTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCACTCCCCAAAAGACAGGC
* * * * *
97148031 A-AGTTTTCTCTACCATCTTTGTCATTCTAGAGATTTTGATTGCTATTTTACTAATGAGAGATCA
66 AGA-TTTTCCCTCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTATTTTACTAATGAGGGATCA
* * ** * * *
97148095 TAATACCCATTTCGTTAATTGTAAAATGTGTTTTTTACATCCAATTTCTCCCTTTTTAGTTCATT
130 TAATGCCCATTTCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCT-CCGTTCTAGTTCATT
* *
97148160 TTGGTGCAGATAGCAAGAAAGCGAGTG
194 CTGGTGCAGATGGCAAGAAAGCGAGTG
* * * *
97148187 GACATACTGCAACTCCTCCTACTTCTAAAAAGAAGGCAAAGCTGGTCACT-CCCAAAAGAC-GGC
1 GACATACTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCACTCCCCAAAAGACAGGC
* * * *
97148250 AGATTTTTCCTCCCATCTTTGCCCTTTTAGAGCTTTTGATTGTTATTTTACTAATGAGGGATCAT
66 AGATTTTCCCTCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTATTTTACTAATGAGGGATCAT
* * * * * * *
97148315 ATTACCGATTTCTTCAATTGTAAAATTTGTTCTTTACTTCCAATTTCTCCGTTCTAGTTTATTCT
131 AATGCCCATTTCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTTCATTCT
* * * *
97148380 GGTACAGATAGCAAGAAATCGGGTG
196 GGTGCAGATGGCAAGAAAGCGAGTG
* * * * * * *
97148405 GAAATATTGCAACCCTTCCTGCTCCCAAAAAGAAGGCAAAGTTGTTTACTCCCCAAAAAACAGGC
1 GACATACTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCACTCCCCAAAAGACAGGC
* * * *
97148470 AGGTTTCCCCTCCTATCTTTGCCCTTCTAGAGATTTTGATTGTTATTTTACTAATGAGGGATCAT
66 AGATTTTCCCTCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTATTTTACTAATGAGGGATCAT
* *
97148535 AATGCCCATTTCTTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAATTCATTCT
131 AATGCCCATTTCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTTCATTCT
*
97148600 AGTGCAGATGGCAAGAAAGC-AGGTG
196 GGTGCAGATGGCAAGAAAGCGA-GTG
* * * ** *
97148625 GACGTATTGCAACCCCTCCTGCTCCCATAAAGAAAAACAAAGTTGGTCACTCCCCAAAAGACAGG
1 GACATACTGCAACCCCTCCTGCTCCCAAAAAG-AAGGCAAAGCTGGTCACTCCCCAAAAGACAGG
* * * *
97148690 CAGATTTTCCATCTCATCTTTGTCCTTCTAGAGATTTTGATTGCTATTTTACTAATAAGGGATCA
65 CAGATTTTCCCTCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTATTTTACTAATGAGGGATCA
* * * * *
97148755 TAATACCAATTTCGTCAATTGTAAAATGTGTTCCTTATTTCCAATTTCTCCATTTTAGTTCATTC
130 TAATGCCCATTTCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTTCATTC
*
97148820 TGGTACAGATGGCAAGAAAGCGAGTG
195 TGGTGCAGATGGCAAGAAAGCGAGTG
* * * ***
97148846 GACATACTGCAACCCCTCCTGCTCCCAAAAATAACGCAAAGTTGGTCACTCTTGAAAAGACAGGC
1 GACATACTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCACTCCCCAAAAGACAGGC
*** * * * *
97148911 ATCCTTTCCTTCCCATCTTT-TCCTTCTAGGGATTTTGATTGTTATTTTACTAATGAGGGATCAT
66 AGATTTTCCCTCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTATTTTACTAATGAGGGATCAT
** * * * **
97148975 AATGCCTGTTTCGTTAATTGTAAAATATGTT-CTGTACTTTCAATTTCTTAAG-TCTAGTTCATT
131 AATGCCCATTTCGTCAATTGTAAAATGTGTTCCT-TACTTCCAATTTC-TCCGTTCTAGTTCATT
*
97149038 CTGGTGCAGATGGCAAAAAAGCGAGTG
194 CTGGTGCAGATGGCAAGAAAGCGAGTG
* * * *
97149065 GACATACTACAACCCCTCCTACTCCCAAAAAGAAGGCAAAGCTAGTCACTCCCCAAAAGACAAGC
1 GACATACTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCACTCCCCAAAAGACAGGC
* * ** * *
97149130 AGGTTTTCTCTGTCATCTTTGCCCTTCTA-ATGATTTTGATTGCTATCTTACTAATGAGAGATCA
66 AGATTTTCCCTCCCATCTTTGCCCTTCTAGA-GATTTTGATTGCTATTTTACTAATGAGGGATCA
** * * *
97149194 TAATTTCCATTTCGTTAATTGTAAAATGTGTTCCTTACTTTCAATTTCTCCATTCTAGTTCATTC
130 TAATGCCCATTTCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTTCATTC
** *
97149259 TGGTGCAGATAACAAGAAAGCAAGTG
195 TGGTGCAGATGGCAAGAAAGCGAGTG
* * *
97149285 GACATACTGCAACCCCTCCTGCTCCTAAAAAGAAGGCAAAGCTTGTCACT-CCCAAAAGATAGGC
1 GACATACTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCACTCCCCAAAAGACAGGC
* * *
97149349 AGATTTTCCCTCCCATCTTTGCCCTTTTAGAGATTTTGATTGCTATTTTACTAATAAGGGATTAT
66 AGATTTTCCCTCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTATTTTACTAATGAGGGATCAT
* *
97149414 AATGCCCATTTCTTCAATTGTAAAATGTGTTCCTTACTTCCAATTTATCCGTTCTAGTTCATTCT
131 AATGCCCATTTCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTTCATTCT
* * * * *
97149479 GATGTAGATGGCAATAAAGCGGGTA
196 GGTGCAGATGGCAAGAAAGCGAGTG
* * *
97149504 GACATACTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTAGTCACTCCCCAAAAGATAGGA
1 GACATACTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCACTCCCCAAAAGACAGGC
* * * * * *
97149569 AGATTTTCCCTCCAATCTTTGCCATTTTAGAGATTTTAATTGTTATTTTACTAATAAGGGATCAT
66 AGATTTTCCCTCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTATTTTACTAATGAGGGATCAT
* *
97149634 AATGCCCATTTCGTCAATTGTAAAATTTGTTCCTTACTTCCAATTTATCCGTTCTAGTTCATTCT
131 AATGCCCATTTCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTTCATTCT
* *
97149699 GATGCAGATGGCAAGAAAGCGGGTG
196 GGTGCAGATGGCAAGAAAGCGAGTG
* * *
97149724 GACATACTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAACGCTGGTTACTCCCCAAAAGATAGGC
1 GACATACTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCACTCCCCAAAAGACAGGC
* * * * **
97149789 AGATTTTCGCTCCCATTTTTGCCCTTCTAGAGA-ATTGATTTCTATTTTACTAATGAGATATCAT
66 AGATTTTCCCTCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTATTTTACTAATGAGGGATCAT
** ** * * *
97149853 AATGCCCATTTTATTTATTGTAAAATGTGTTCCTTACTTCCAATTTCTTCGATCTAATTCATTCT
131 AATGCCCATTTCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTTCATTCT
97149918 GGTGCAGATGGCAAGAAAGCGAGTG
196 GGTGCAGATGGCAAGAAAGCGAGTG
* * * * * *
97149943 GACATATTGCAACCCCTCCTACTCCCAAAAATAAGGCAAAACTGGTCACTCACGAAAAGACA
1 GACATACTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCACTCCCCAAAAGACA
97150005 AGAAGGCTTT
Statistics
Matches: 6799, Mismatches: 1094, Indels: 171
0.84 0.14 0.02
Matches are distributed among these distances:
217 26 0.00
218 363 0.05
219 1892 0.28
220 2757 0.41
221 1515 0.22
222 244 0.04
223 2 0.00
ACGTcount: A:0.29, C:0.22, G:0.15, T:0.33
Consensus pattern (220 bp):
GACATACTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGCTGGTCACTCCCCAAAAGACAGGC
AGATTTTCCCTCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTATTTTACTAATGAGGGATCAT
AATGCCCATTTCGTCAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTTCATTCT
GGTGCAGATGGCAAGAAAGCGAGTG
Found at i:97153098 original size:18 final size:18
Alignment explanation
Indices: 97153075--97153115 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
97153065 TTCTTTTCTC
97153075 TTTCTA-TCACAATTCCAA
1 TTTCTATTCACAATT-CAA
*
97153093 TTTCTATTCATAATTCAA
1 TTTCTATTCACAATTCAA
97153111 TTTCT
1 TTTCT
97153116 TTTTTTTTAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 14 0.67
19 7 0.33
ACGTcount: A:0.29, C:0.22, G:0.00, T:0.49
Consensus pattern (18 bp):
TTTCTATTCACAATTCAA
Found at i:97153309 original size:38 final size:39
Alignment explanation
Indices: 97153225--97153359 Score: 116
Period size: 39 Copynumber: 3.4 Consensus size: 39
97153215 ACCAATATGG
*
97153225 CACCCAGTGTCTCATCGGATAGTTCGAAGTAATAGTTGA
1 CACCCAGTGTCTCATCGGATAGTCCGAAGTAATAGTTGA
* *
97153264 CACCCAGTGTCTCATCGGCCTAG-CCGAAGTAA-AGTTGG
1 CACCCAGTGTCTCATCGG-ATAGTCCGAAGTAATAGTTGA
* ** * *
97153302 TACCCAGTACCTCATCGAATCTA-TCCGAAGAAATTTAG-TGA
1 CACCCAGTGTCTCATCGGA--TAGTCCGAAGTAA--TAGTTGA
*
97153343 CACCTAGTGTCTCATCG
1 CACCCAGTGTCTCATCG
97153360 ACTCGAGGTC
Statistics
Matches: 75, Mismatches: 14, Indels: 12
0.74 0.14 0.12
Matches are distributed among these distances:
38 19 0.25
39 36 0.48
40 3 0.04
41 15 0.20
42 2 0.03
ACGTcount: A:0.27, C:0.26, G:0.21, T:0.26
Consensus pattern (39 bp):
CACCCAGTGTCTCATCGGATAGTCCGAAGTAATAGTTGA
Found at i:97154363 original size:25 final size:25
Alignment explanation
Indices: 97154307--97154353 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
97154297 TGTAACTTTC
*
97154307 TTTC-TTTTTTTTAGTTCTTTTACG
1 TTTCATTTGTTTTAGTTCTTTTACG
*
97154331 TTTCATTTGTTTTATTTCTTTTA
1 TTTCATTTGTTTTAGTTCTTTTA
97154354 TGTTATATTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 4 0.20
25 16 0.80
ACGTcount: A:0.11, C:0.11, G:0.06, T:0.72
Consensus pattern (25 bp):
TTTCATTTGTTTTAGTTCTTTTACG
Found at i:97156344 original size:46 final size:47
Alignment explanation
Indices: 97156274--97156385 Score: 131
Period size: 50 Copynumber: 2.3 Consensus size: 47
97156264 GATAGAAATG
*
97156274 AGCCATGTAAGTCCATATCTG-ATATATGGCTTTGGAGACAGGAATA
1 AGCCATGTAAGTCCATATCTGAATATATGGCATTGGAGACAGGAATA
97156320 AGCCATGTAAG-CGCATAT-TAGATATATATATGGCATTGGAGACAGGAATA
1 AGCCATGTAAGTC-CATATCT-G--A-ATATATGGCATTGGAGACAGGAATA
**
97156370 ATTCATGTAAGTCCAT
1 AGCCATGTAAGTCCAT
97156386 GTCGAAAAGA
Statistics
Matches: 56, Mismatches: 3, Indels: 10
0.81 0.04 0.14
Matches are distributed among these distances:
45 2 0.04
46 17 0.30
50 36 0.64
51 1 0.02
ACGTcount: A:0.35, C:0.14, G:0.22, T:0.29
Consensus pattern (47 bp):
AGCCATGTAAGTCCATATCTGAATATATGGCATTGGAGACAGGAATA
Found at i:97164402 original size:220 final size:218
Alignment explanation
Indices: 97163760--97164981 Score: 1567
Period size: 220 Copynumber: 5.6 Consensus size: 218
97163750 CAATTTATCG
* * * *
97163760 AGCGGGTGGACATACTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAATGCTGGTTACTCCCCAAA
1 AGCGAGTGGACATACTGCAACCCCTCCTACTCCCAAAAAGAAGGCAAAGCTGGTCACTCCCCAAA
* *
97163825 AGACATGCAAATTTTCCCTCCCATCTTTGCCCTTCTAGAGA-TTTGATTGCTATTTTACTAATGA
66 AGACAGGCAGATTTTCCCTCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTATTTTACTAATGA
* * * *
97163889 GAGATCATAATGCCCATTTTATTAATTGTAAAATGTGTTTCTTACTTTCAATTTCTCCGATCTAG
131 G-GATCATAATGCCCATTTCATCAATTGTAAAATGTGTTCCTTAC-TTCAATTTCTCCGTTCTAG
*
97163954 TTCATTCTGGTGCAGATGGCAAAAA
194 TTCATTCTGGTGCAGATGGCAAGAA
* * * * * * *
97163979 AGTGAGTGGACATACTGCAACCCCTCCTACTCCCAAAAATAACGCAAAACTGGTCATTCTCGAAA
1 AGCGAGTGGACATACTGCAACCCCTCCTACTCCCAAAAAGAAGGCAAAGCTGGTCACTCCCCAAA
* ** * * * *
97164044 AGACAGGAAGGCTTTCCTTTCCATCTTT-TCCTTCTAGAGATTTTGATTCCTATTTTACTAATGA
66 AGACAGGCAGATTTTCCCTCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTATTTTACTAATGA
** * * * * *
97164108 GAGATCATAATGCCTGTTTCTTTAATTGTAAAATATGTTCTTTACTTTCAATTTCTCTGTTCTAG
131 G-GATCATAATGCCCATTTCATCAATTGTAAAATGTGTTCCTTAC-TTCAATTTCTCCGTTCTAG
* *
97164173 TTTATTCTGGTGCAGATGGCAAAAA
194 TTCATTCTGGTGCAGATGGCAAGAA
* *
97164198 AGCGAGTGGACATATTGCAACCTCTCCTACTCCCAAAAAGAAGGCAAAGCTGGTCACTCCCCAAA
1 AGCGAGTGGACATACTGCAACCCCTCCTACTCCCAAAAAGAAGGCAAAGCTGGTCACTCCCCAAA
** *
97164263 AGACAGGCAGATTTTCCCTCTGATCTTTGCCCTTCTAGAGATTTTGGTTGCTATTTTACTAATGA
66 AGACAGGCAGATTTTCCCTCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTATTTTACTAATGA
* * *
97164328 GGTATCATAATACCCATTTCGTCAATTGTAAAATGTGTTCCTTACTTCAAATTTCTCTGTTCTAG
131 GG-ATCATAATGCCCATTTCATCAATTGTAAAATGTGTTCCTTACTTC-AATTTCTCCGTTCTAG
*
97164393 TTCATTCTGGTGCAGATGGCATGAA
194 TTCATTCTGGTGCAGATGGCAAGAA
* * *
97164418 AG-GATATGGACATATTGCAACCCCTCCTACTCCCAAAAAGAAGGCAAAGCTGGTCATTCCCCAA
1 AGCGA-GTGGACATACTGCAACCCCTCCTACTCCCAAAAAGAAGGCAAAGCTGGTCACTCCCCAA
* * *
97164482 AAAATAGGCAGATTTTCCCTCCCATCTTTGCCCTTTTAGAGATTTTGATTGCTATTTTACTAATA
65 AAGACAGGCAGATTTTCCCTCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTATTTTACTAAT-
* * *
97164547 AATGATCATAATGCCCATTTCATCAATTATAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTA
129 GAGGATCATAATGCCCATTTCATCAATTGTAAAATGTGTTCCTTACTT-CAATTTCTCCGTTCTA
* * *
97164612 GTTCATTCTGGTACACAGGGCAAGAA
193 GTTCATTCTGGTGCAGATGGCAAGAA
* * * * *
97164638 AGCGGGTGGACATACTGCAACCCCTCTTGCTCCCAAAAAGAAGTCAAAGCTAGTCACTCCCCAAA
1 AGCGAGTGGACATACTGCAACCCCTCCTACTCCCAAAAAGAAGGCAAAGCTGGTCACTCCCCAAA
* * * *
97164703 A-ATCAAGCAAATTTCCCCTTCCATCTTTAG-CCTTCTAGAGATTTTGATTGCTATTTTACTAAT
66 AGA-CAGGCAGATTTTCCCTCCCATCTTT-GCCCTTCTAGAGATTTTGATTGCTATTTTACTAAT
* * * *
97164766 AAAGGATTATAATTGCCCATTTCGTCAATTGTAAAATGTGTTCCTTACTTCTAATTTCTCCGATC
129 -GAGGATCATAA-TGCCCATTTCATCAATTGTAAAATGTGTTCCTTACTTC-AATTTCTCCGTTC
*
97164831 TAGTTCATTCTGGTGCAAATGGCAAGAA
191 TAGTTCATTCTGGTGCAGATGGCAAGAA
* * * * *
97164859 AGCGAAT-GACATACTGCAACCCCTCCTGCTCTCAAAAAGAAGGCAAAACTGGTGACTCCCCAAA
1 AGCGAGTGGACATACTGCAACCCCTCCTACTCCCAAAAAGAAGGCAAAGCTGGTCACTCCCCAAA
* * * *
97164923 AGACAGGCAGACTTTCCGTCCCATCTTT-CCCTTCTAGAAATTTTAATTGCTATTTTACT
66 AGACAGGCAGATTTTCCCTCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTATTTTACT
97164982 TTCAATTTAT
Statistics
Matches: 873, Mismatches: 116, Indels: 28
0.86 0.11 0.03
Matches are distributed among these distances:
218 11 0.01
219 289 0.33
220 490 0.56
221 83 0.10
ACGTcount: A:0.29, C:0.23, G:0.16, T:0.32
Consensus pattern (218 bp):
AGCGAGTGGACATACTGCAACCCCTCCTACTCCCAAAAAGAAGGCAAAGCTGGTCACTCCCCAAA
AGACAGGCAGATTTTCCCTCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTATTTTACTAATGA
GGATCATAATGCCCATTTCATCAATTGTAAAATGTGTTCCTTACTTCAATTTCTCCGTTCTAGTT
CATTCTGGTGCAGATGGCAAGAA
Found at i:97165222 original size:827 final size:829
Alignment explanation
Indices: 97164148--97165809 Score: 2472
Period size: 827 Copynumber: 2.0 Consensus size: 829
97164138 AAATATGTTC
* * * *
97164148 TTTACTTTCAATTTCTCTGTTCTAGTTTATTCTGGTGCAGATGGCAAAAAAGCGAGTGGACATAT
1 TTTACTTTCAATTTATCTATTCTAGTTCATTCTGGTGCAGATGGCAAAAAAGCGAGTGGACATAC
* *
97164213 TGCAACCTCTCCTACTCCCAAAAAGAAGGCAAAGCTGGTCACTCCCCAAAAGACAGGCAGATTTT
66 TACAACCCCTCCTACTCCCAAAAAGAAGGCAAAGCTGGTCACTCCCCAAAAGACAGGCAGATTTT
* * * *
97164278 CCCTCTGATCTTTGCCCTTCTAGAGATTTTGGTTGCTATTTTACTAATGAGGTATCATAATACCC
131 CCCTCTCATCTTTGCCCTTCTAGAGATTTTGATTACTATTTTACTAATGAGGGATCATAATACCC
* * *
97164343 ATTTCGTCAATTGTAAAATGTGTTCCTTACTTCAAATTTCTCTGTTCTAGTTCATTCTGGTGCAG
196 ATTTCATAAATTGTAAAATGTGTTCCTTACTTCAAATTTCTCCGTTCTAGTTCATTCTGGTGCAG
* * * *
97164408 ATGGCATGAAAGGATATGGACATATTGCAACCCCTCCTACTCCCAAAAAGAAGGCAAAGCTGGTC
261 ATGGCAAGAAAGCAGATGGACATATTACAACCCCTCCTACTCCCAAAAAGAAGGCAAAGCTGGTC
* * * *
97164473 ATTCCCCAAAAAATAGGCAGATTTTCCCTCCCATCTTTGCCCTTTTAGAGATTTTGATTGCTATT
326 ACTCCCAAAAAAACAGGCAGATTTTCCCTCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTATT
*
97164538 TTACTAATAAATGATCATAATGCCCATTTCATCAATTATAAAATGTGTTCCTTACTTCCAATTTC
391 TTACTAATAAAGGATCATAATGCCCATTTCATCAATTATAAAATGTGTTCCTTACTTCCAATTTC
* * *
97164603 TCCGTTCTAGTTCATTCTGGTACACAGGGCAAGAAAGCGGGTGGACATACTGCAACCCCTCTTGC
456 TCCGTTCTAGTTCATTCTAGTACACAGGGCAAGAAAGCAGGTGGACATACTGCAACCCCTCCTGC
* * * *
97164668 TCCCAAAAAGAAGTCAAAGCTAGTCACTCCCCAAAAATCAAGCAAATTTCCCCTTCCATCTTTAG
521 TCCCAAAAAGAAGGCAAAGCTAGTCACTCCCCAAAAAACAAGCAAATTTCCCATCCCATCTTT-G
*
97164733 -CCTTCTAGAGATTTTGATTGCTATTTTACTAATAAAGGATTATAATTGCCCATTTCGTCAATTG
585 TCCTTCTAGAGATTTTGATTGCTATTTTACTAATAAAGGATCATAA-TGCCCATTTCGTCAATTG
* *
97164797 TAAAATGTGTTCCTTACTTCTAATTTCTCCGATCTAGTTCATTCTGGTGCAAATGGCAAGAAAGC
649 TAAAATGTGTTCCTTACTTCCAATTTCTCCGATCTAGTTCATTCTGGTGCAAATGGCAACAAAGC
* *
97164862 GAAT-GACATACTGCAACCCCTCCTGCTCTCAAAAAGAAGGCAAAACTGGTGACTCCCCAAAAGA
714 GAATGGACATACTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAACTGGTCACTCCCCAAAAGA
*
97164926 CAGGCAGACTTTCCGTCCCATCTTT-CCCTTCTAGAA-ATTTTAATTGCTAT
779 CAGGCAGACTTTCCCTCCCATCTTTGCCCTTCTA-AAGATTTTAATTGCTAT
97164976 TTTACTTTCAATTTATCTATTCTAGTTCATTCTGGTGCAGATGG-AAAAAAGCGAGTGGACATAC
1 TTTACTTTCAATTTATCTATTCTAGTTCATTCTGGTGCAGATGGCAAAAAAGCGAGTGGACATAC
* *
97165040 TACAACCCCTCCTGCTCCCAAAAAGAAGGTAAAGCTGGTCACTCCCCAAAAGACAGGCAGATTTT
66 TACAACCCCTCCTACTCCCAAAAAGAAGGCAAAGCTGGTCACTCCCCAAAAGACAGGCAGATTTT
* * * *
97165105 CCCT-TCCATCTTTGCCCTTTTAGAGCTTTTGATTATTATTTTACTAATGAGGGATCATAATGCC
131 CCCTCT-CATCTTTGCCCTTCTAGAGATTTTGATTACTATTTTACTAATGAGGGATCATAATACC
*
97165169 CATTTCATAAATTGTAAAATGTGTTCCTTACTTCCAATTTCTCCGTTCTAGTTCATTCTGGTGCA
195 CATTTCATAAATTGTAAAATGTGTTCCTTACTTCAAATTTCTCCGTTCTAGTTCATTCTGGTGCA
* * * * * * *
97165234 GATGGCAAGAAATCAGGTGGACATATTACAACCCCTCTTGCTTCCAAAAAGAAGGCAAAGTTGTT
260 GATGGCAAGAAAGCAGATGGACATATTACAACCCCTCCTACTCCCAAAAAGAAGGCAAAGCTGGT
* * * * *
97165299 CACTCCCAAAAAAACAGGCAGGTTTTCCCTCCTATTTTTGCCCTTCTAGGGATTTTGATTGTTAT
325 CACTCCCAAAAAAACAGGCAGATTTTCCCTCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTAT
* * ** *
97165364 TTTACTAATGAGGGATCATAATGCTTATTTCATCAATTGTAAAATGTGTTCCTTACTTCCAATTT
390 TTTACTAATAAAGGATCATAATGCCCATTTCATCAATTATAAAATGTGTTCCTTACTTCCAATTT
* * * * * *
97165429 CTCTGTTCTAGTTCATTCTAGTGCAGATGGCAAGAAAGCAGGTGGACGTACTGCAACCCGTCCTG
455 CTCCGTTCTAGTTCATTCTAGTACACAGGGCAAGAAAGCAGGTGGACATACTGCAACCCCTCCTG
* * * ** *
97165494 CTCCCAAAAAGAAGGCAAAGTTGGTCACTCCCCAAAAAACAGGCAGCTTTTCCATCCCATCTTTG
520 CTCCCAAAAAGAAGGCAAAGCTAGTCACTCCCCAAAAAACAAGCAAATTTCCCATCCCATCTTTG
* *
97165559 TCCTTCTAGAGATTTTGATTGCTATTTTACTAATGAGGGATCATAATGCCCATTTCGTCAATTGT
585 TCCTTCTAGAGATTTTGATTGCTATTTTACTAATAAAGGATCATAATGCCCATTTCGTCAATTGT
* * * * *
97165624 AAAATGTGTTTCTTATTTCCAATTTCTCCGTTTTAGTTCATTCTGGTGCAGATGGCAACAAAGCG
650 AAAATGTGTTCCTTACTTCCAATTTCTCCGATCTAGTTCATTCTGGTGCAAATGGCAACAAAGCG
* ** *
97165689 AGTGGACATACTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGTTGGTCACTCTCCAAAAGAC
715 AATGGACATACTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAACTGGTCACTCCCCAAAAGAC
** * *
97165754 AGGCAGGTTTTCCCTCCCATCTTTGCCCTTTTAAAGATTTTGATTGCTAT
780 AGGCAGACTTTCCCTCCCATCTTTGCCCTTCTAAAGATTTTAATTGCTAT
97165804 TTTACT
1 TTTACT
97165810 AATGAGGGAT
Statistics
Matches: 743, Mismatches: 86, Indels: 10
0.89 0.10 0.01
Matches are distributed among these distances:
826 81 0.11
827 595 0.80
828 67 0.09
ACGTcount: A:0.28, C:0.23, G:0.16, T:0.33
Consensus pattern (829 bp):
TTTACTTTCAATTTATCTATTCTAGTTCATTCTGGTGCAGATGGCAAAAAAGCGAGTGGACATAC
TACAACCCCTCCTACTCCCAAAAAGAAGGCAAAGCTGGTCACTCCCCAAAAGACAGGCAGATTTT
CCCTCTCATCTTTGCCCTTCTAGAGATTTTGATTACTATTTTACTAATGAGGGATCATAATACCC
ATTTCATAAATTGTAAAATGTGTTCCTTACTTCAAATTTCTCCGTTCTAGTTCATTCTGGTGCAG
ATGGCAAGAAAGCAGATGGACATATTACAACCCCTCCTACTCCCAAAAAGAAGGCAAAGCTGGTC
ACTCCCAAAAAAACAGGCAGATTTTCCCTCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTATT
TTACTAATAAAGGATCATAATGCCCATTTCATCAATTATAAAATGTGTTCCTTACTTCCAATTTC
TCCGTTCTAGTTCATTCTAGTACACAGGGCAAGAAAGCAGGTGGACATACTGCAACCCCTCCTGC
TCCCAAAAAGAAGGCAAAGCTAGTCACTCCCCAAAAAACAAGCAAATTTCCCATCCCATCTTTGT
CCTTCTAGAGATTTTGATTGCTATTTTACTAATAAAGGATCATAATGCCCATTTCGTCAATTGTA
AAATGTGTTCCTTACTTCCAATTTCTCCGATCTAGTTCATTCTGGTGCAAATGGCAACAAAGCGA
ATGGACATACTGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAACTGGTCACTCCCCAAAAGACA
GGCAGACTTTCCCTCCCATCTTTGCCCTTCTAAAGATTTTAATTGCTAT
Found at i:97165376 original size:220 final size:220
Alignment explanation
Indices: 97164977--97165929 Score: 1408
Period size: 220 Copynumber: 4.3 Consensus size: 220
97164967 AATTGCTATT
* * ** *
97164977 TTACTTTCAATTTATCTATTCTAGTTCATTCTGGTGCAGATGG-AAAAAAGC-GAGTGGACATAC
1 TTACTTCCAATTTCTCCGTTCTAGTTCATTCTGGTGCAGATGGCAAGAAAGCAG-GTGGACATAC
* * * * *
97165040 TACAACCCCTCCTGCTCCCAAAAAGAAGGTAAAGCTGGTCACTCCCCAAAAGACAGGCAGATTTT
65 TGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGTTGGTCACTCCCCAAAAAACAGGCAGGTTTT
* * * **
97165105 CCCTTCCATCTTTGCCCTTTTAGAGCTTTTGATTATTATTTTACTAATGAGGGATCATAATGCCC
130 CCCTCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTATTTTACTAATGAGGGATCATAATGCCC
*
97165170 ATTTCATAAATTGTAAAATGTGTTCC
195 ATTTCATCAATTGTAAAATGTGTTCC
* *
97165196 TTACTTCCAATTTCTCCGTTCTAGTTCATTCTGGTGCAGATGGCAAGAAATCAGGTGGACATATT
1 TTACTTCCAATTTCTCCGTTCTAGTTCATTCTGGTGCAGATGGCAAGAAAGCAGGTGGACATACT
* * * * *
97165261 ACAACCCCTCTTGCTTCCAAAAAGAAGGCAAAGTTGTTCACTCCCAAAAAAACAGGCAGGTTTTC
66 GCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGTTGGTCACTCCCCAAAAAACAGGCAGGTTTTC
* * * * **
97165326 CCTCCTATTTTTGCCCTTCTAGGGATTTTGATTGTTATTTTACTAATGAGGGATCATAATGCTTA
131 CCTCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTATTTTACTAATGAGGGATCATAATGCCCA
97165391 TTTCATCAATTGTAAAATGTGTTCC
196 TTTCATCAATTGTAAAATGTGTTCC
* * *
97165416 TTACTTCCAATTTCTCTGTTCTAGTTCATTCTAGTGCAGATGGCAAGAAAGCAGGTGGACGTACT
1 TTACTTCCAATTTCTCCGTTCTAGTTCATTCTGGTGCAGATGGCAAGAAAGCAGGTGGACATACT
* *
97165481 GCAACCCGTCCTGCTCCCAAAAAGAAGGCAAAGTTGGTCACTCCCCAAAAAACAGGCAGCTTTTC
66 GCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGTTGGTCACTCCCCAAAAAACAGGCAGGTTTTC
* *
97165546 CATCCCATCTTTGTCCTTCTAGAGATTTTGATTGCTATTTTACTAATGAGGGATCATAATGCCCA
131 CCTCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTATTTTACTAATGAGGGATCATAATGCCCA
* *
97165611 TTTCGTCAATTGTAAAATGTGTTTC
196 TTTCATCAATTGTAAAATGTGTTCC
* * *
97165636 TTATTTCCAATTTCTCCGTTTTAGTTCATTCTGGTGCAGATGGCAACAAAGC-GAGTGGACATAC
1 TTACTTCCAATTTCTCCGTTCTAGTTCATTCTGGTGCAGATGGCAAGAAAGCAG-GTGGACATAC
* *
97165700 TGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGTTGGTCACTCTCCAAAAGACAGGCAGGTTTT
65 TGCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGTTGGTCACTCCCCAAAAAACAGGCAGGTTTT
* * *
97165765 CCCTCCCATCTTTGCCCTTTTAAAGATTTTGATTGCTATTTTACTAATGAGGGATCATAATGCCT
130 CCCTCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTATTTTACTAATGAGGGATCATAATGCCC
*
97165830 ATTTCGTCAATTGTAAAATGTGTTCC
195 ATTTCATCAATTGTAAAATGTGTTCC
* * **
97165856 TTACTTCAAATTTCTCCGTTCTAGTTCATTCTTGTGCAGATGGCAAGAAAGCATATGGACATACT
1 TTACTTCCAATTTCTCCGTTCTAGTTCATTCTGGTGCAGATGGCAAGAAAGCAGGTGGACATACT
97165921 GCAACCCCT
66 GCAACCCCT
97165930 TACCCTTCCA
Statistics
Matches: 660, Mismatches: 70, Indels: 7
0.90 0.09 0.01
Matches are distributed among these distances:
219 40 0.06
220 619 0.94
221 1 0.00
ACGTcount: A:0.27, C:0.22, G:0.17, T:0.33
Consensus pattern (220 bp):
TTACTTCCAATTTCTCCGTTCTAGTTCATTCTGGTGCAGATGGCAAGAAAGCAGGTGGACATACT
GCAACCCCTCCTGCTCCCAAAAAGAAGGCAAAGTTGGTCACTCCCCAAAAAACAGGCAGGTTTTC
CCTCCCATCTTTGCCCTTCTAGAGATTTTGATTGCTATTTTACTAATGAGGGATCATAATGCCCA
TTTCATCAATTGTAAAATGTGTTCC
Found at i:97166555 original size:20 final size:21
Alignment explanation
Indices: 97166532--97166580 Score: 68
Period size: 20 Copynumber: 2.4 Consensus size: 21
97166522 TAAATCAAAT
97166532 AAATTATTTATAAA-AATT-TA
1 AAATTATTTA-AAAGAATTATA
97166552 AAATTATTTAAAAGAATTATA
1 AAATTATTTAAAAGAATTATA
97166573 AAA-TATTT
1 AAATTATTT
97166581 TTTTTAAATT
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
19 3 0.11
20 19 0.70
21 5 0.19
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (21 bp):
AAATTATTTAAAAGAATTATA
Found at i:97166854 original size:16 final size:15
Alignment explanation
Indices: 97166829--97166858 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
97166819 TAATTATTTT
97166829 CAAAATTTTATATAA
1 CAAAATTTTATATAA
97166844 CAAATATTTTATATA
1 CAAA-ATTTTATATA
97166859 GTACTCACTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.50, C:0.07, G:0.00, T:0.43
Consensus pattern (15 bp):
CAAAATTTTATATAA
Found at i:97173202 original size:18 final size:19
Alignment explanation
Indices: 97173179--97173218 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 19
97173169 ATATACATTT
*
97173179 TTTAATGTGAT-TTTAAGG
1 TTTAATGTGATATTTAAAG
*
97173197 TTTAATTTGATATTTAAAG
1 TTTAATGTGATATTTAAAG
97173216 TTT
1 TTT
97173219 TTCGGTTTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 10 0.53
19 9 0.47
ACGTcount: A:0.30, C:0.00, G:0.15, T:0.55
Consensus pattern (19 bp):
TTTAATGTGATATTTAAAG
Found at i:97175459 original size:16 final size:15
Alignment explanation
Indices: 97175412--97175458 Score: 76
Period size: 15 Copynumber: 3.1 Consensus size: 15
97175402 ATAACTTAAA
97175412 TTCAACACTTAATTT
1 TTCAACACTTAATTT
* *
97175427 TCCAATACTTAATTT
1 TTCAACACTTAATTT
97175442 TTCAACACTTAATTT
1 TTCAACACTTAATTT
97175457 TT
1 TT
97175459 TAACTTATCA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
15 28 1.00
ACGTcount: A:0.32, C:0.19, G:0.00, T:0.49
Consensus pattern (15 bp):
TTCAACACTTAATTT
Found at i:97175750 original size:8 final size:7
Alignment explanation
Indices: 97175725--97175753 Score: 51
Period size: 7 Copynumber: 4.3 Consensus size: 7
97175715 AAGTTAATGT
97175725 GTTTTTA
1 GTTTTTA
97175732 -TTTTTA
1 GTTTTTA
97175738 GTTTTTA
1 GTTTTTA
97175745 GTTTTTA
1 GTTTTTA
97175752 GT
1 GT
97175754 AATGTTATGA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
6 6 0.29
7 15 0.71
ACGTcount: A:0.14, C:0.00, G:0.14, T:0.72
Consensus pattern (7 bp):
GTTTTTA
Found at i:97178275 original size:50 final size:50
Alignment explanation
Indices: 97178189--97178364 Score: 264
Period size: 50 Copynumber: 3.5 Consensus size: 50
97178179 CCATGGCAAC
*
97178189 AAGTGATAAGTGATAGCTT-GGCTACACTTATCTGATCAAGGATAAGTGA
1 AAGTGATAAGTAATAGCTTCGGCTACACTTATCTGATCAAGGATAAGTGA
97178238 AAGTGATAAGTAATAGCTTCGGCTACACTTATCTGATCAAGGATAAGTGA
1 AAGTGATAAGTAATAGCTTCGGCTACACTTATCTGATCAAGGATAAGTGA
* * *
97178288 AAGTAATAAGTAATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
1 AAGTGATAAGTAATAGCTTCGGCTACACTTATCTGATCAAGGATAAGTGA
* ** *
97178338 CAAGTGAAAAGTGGTAGCTTCGACTAC
1 -AAGTGATAAGTAATAGCTTCGGCTAC
97178365 CTGATCAGTG
Statistics
Matches: 116, Mismatches: 9, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
49 18 0.16
50 77 0.66
51 21 0.18
ACGTcount: A:0.36, C:0.15, G:0.22, T:0.27
Consensus pattern (50 bp):
AAGTGATAAGTAATAGCTTCGGCTACACTTATCTGATCAAGGATAAGTGA
Found at i:97178378 original size:31 final size:31
Alignment explanation
Indices: 97178340--97178515 Score: 186
Period size: 31 Copynumber: 5.8 Consensus size: 31
97178330 ACAAATGACA
97178340 AGTGAAAAGTGGTAGCTTCGACTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGACTACCTGATC
*
97178371 AGTGAAAAGTGGTAGC--CGAAGCTACCTGATA
1 AGTGAAAAGTGGTAGCTTCG-A-CTACCTGATC
97178402 AGTGAAAAGTGGTAGCTTCTG-CTACCTGATC
1 AGTGAAAAGTGGTAGCTTC-GACTACCTGATC
* *
97178433 AGTGAAAA---AT-GCTCCGACTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGACTACCTGATC
* * * *
97178460 AATGAAAAATGGTAGCTCCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGACTACCTGATC
* * *
97178491 AATGAATAGTGGTAGCTTCGGCTAC
1 AGTGAAAAGTGGTAGCTTCGACTAC
97178516 AAGTGATTTC
Statistics
Matches: 125, Mismatches: 10, Indels: 20
0.81 0.06 0.13
Matches are distributed among these distances:
26 1 0.01
27 21 0.17
28 1 0.01
29 2 0.02
30 2 0.02
31 96 0.77
33 1 0.01
34 1 0.01
ACGTcount: A:0.31, C:0.20, G:0.25, T:0.24
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTTCGACTACCTGATC
Found at i:97178436 original size:62 final size:60
Alignment explanation
Indices: 97178338--97178506 Score: 211
Period size: 58 Copynumber: 2.8 Consensus size: 60
97178328 GGACAAATGA
97178338 CAAGTGAAAAGTGGTAGCTTCGACTACCTGATCAGTGAAAAGTGGTAGCCGAAGCTACCTGAT
1 CAAGTGAAAAGTGGTAGCTTCG-CTACCTGATCAGTGAAAAGTGGTAGCCG-A-CTACCTGAT
* *
97178401 -AAGTGAAAAGTGGTAGCTTCTGCTACCTGATCAGTGAAAAATGCT--CCGACTACCTGAT
1 CAAGTGAAAAGTGGTAGCTTC-GCTACCTGATCAGTGAAAAGTGGTAGCCGACTACCTGAT
* * * *
97178459 CAA-TGAAAAATGGTAGCTCCGGCTACCTGATCAATGAATAGTGGTAGC
1 CAAGTGAAAAGTGGTAGCTTC-GCTACCTGATCAGTGAAAAGTGGTAGC
97178507 TTCGGCTACA
Statistics
Matches: 93, Mismatches: 9, Indels: 11
0.82 0.08 0.10
Matches are distributed among these distances:
58 44 0.47
59 3 0.03
60 4 0.04
62 41 0.44
63 1 0.01
ACGTcount: A:0.32, C:0.20, G:0.25, T:0.24
Consensus pattern (60 bp):
CAAGTGAAAAGTGGTAGCTTCGCTACCTGATCAGTGAAAAGTGGTAGCCGACTACCTGAT
Done.