Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr02 99090824
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 99090824
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 317 characters in sequence are not A, C, G, or T
File 314 of 318
Found at i:97474507 original size:16 final size:15
Alignment explanation
Indices: 97474481--97474515 Score: 52
Period size: 16 Copynumber: 2.3 Consensus size: 15
97474471 TGATGTGAAT
97474481 AATATAAAATATTAA
1 AATATAAAATATTAA
*
97474496 AATATCAAAATATTAG
1 AATAT-AAAATATTAA
97474512 AATA
1 AATA
97474516 ATAATAATTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 5 0.28
16 13 0.72
ACGTcount: A:0.63, C:0.03, G:0.03, T:0.31
Consensus pattern (15 bp):
AATATAAAATATTAA
Found at i:97474689 original size:20 final size:20
Alignment explanation
Indices: 97474632--97474691 Score: 59
Period size: 23 Copynumber: 2.9 Consensus size: 20
97474622 AATACTACAT
97474632 AAATATGTACAT-ATATAAA
1 AAATATGTACATAATATAAA
** *
97474651 AAATAAATACGTGATAATATTAA
1 AAATATGTAC---ATAATATAAA
97474674 AAATATGTACATAATATA
1 AAATATGTACATAATATA
97474692 GTGTAAAAAA
Statistics
Matches: 31, Mismatches: 6, Indels: 7
0.70 0.14 0.16
Matches are distributed among these distances:
19 8 0.26
20 7 0.23
22 2 0.06
23 14 0.45
ACGTcount: A:0.57, C:0.05, G:0.07, T:0.32
Consensus pattern (20 bp):
AAATATGTACATAATATAAA
Found at i:97474831 original size:26 final size:26
Alignment explanation
Indices: 97474670--97474832 Score: 95
Period size: 25 Copynumber: 6.3 Consensus size: 26
97474660 CGTGATAATA
* * *
97474670 TTAAAAATATGTACATAATATAGT-G
1 TTAAATATATATACATAATATAGTAT
* * *
97474695 TAAAAAATACATACATAATATA--A-
1 TTAAATATATATACATAATATAGTAT
* **
97474718 TTAAA-ATATATACATAAGATAACAT
1 TTAAATATATATACATAATATAGTAT
* *
97474743 GTAAAAATATATATATAAATAATATAGTA-
1 -T--TAA-ATATATATACATAATATAGTAT
* *
97474772 TTAAAGATATATACATAAAATAGTAT
1 TTAAATATATATACATAATATAGTAT
* * * *
97474798 ATATATATATATACGTAATATAGAAT
1 TTAAATATATATACATAATATAGTAT
97474824 TTAAATATA
1 TTAAATATA
97474833 CCTAATATAT
Statistics
Matches: 105, Mismatches: 23, Indels: 19
0.71 0.16 0.13
Matches are distributed among these distances:
22 14 0.13
23 4 0.04
24 1 0.01
25 37 0.35
26 30 0.29
28 3 0.03
29 1 0.01
30 15 0.14
ACGTcount: A:0.55, C:0.04, G:0.06, T:0.34
Consensus pattern (26 bp):
TTAAATATATATACATAATATAGTAT
Found at i:97475403 original size:30 final size:30
Alignment explanation
Indices: 97475367--97475430 Score: 92
Period size: 30 Copynumber: 2.1 Consensus size: 30
97475357 ACAAGTGGTG
*
97475367 GTGGAGCAAGTGTGGCTACTGGAGTAGGTA
1 GTGGAGCAAGTGTAGCTACTGGAGTAGGTA
* * *
97475397 GTGGAGCAAGTGTAGCTAGTGGAGTTGGTG
1 GTGGAGCAAGTGTAGCTACTGGAGTAGGTA
97475427 GTGG
1 GTGG
97475431 CAAAGGCTAA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.20, C:0.08, G:0.47, T:0.25
Consensus pattern (30 bp):
GTGGAGCAAGTGTAGCTACTGGAGTAGGTA
Found at i:97476265 original size:28 final size:28
Alignment explanation
Indices: 97476206--97476272 Score: 82
Period size: 28 Copynumber: 2.3 Consensus size: 28
97476196 GGGGTTTTTT
*
97476206 AAATAATATTAAAAAATAATTAAATATAA
1 AAATAATA-TAAAAAATAATTAAATACAA
*
97476235 AAATAATA-AAAAAATAGATTAAATACGA
1 AAATAATATAAAAAATA-ATTAAATACAA
97476263 AAATAGATAT
1 AAATA-ATAT
97476273 TTTTTTGATA
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
27 8 0.24
28 14 0.42
29 11 0.33
ACGTcount: A:0.67, C:0.01, G:0.04, T:0.27
Consensus pattern (28 bp):
AAATAATATAAAAAATAATTAAATACAA
Found at i:97476265 original size:29 final size:28
Alignment explanation
Indices: 97476206--97476265 Score: 77
Period size: 29 Copynumber: 2.1 Consensus size: 28
97476196 GGGGTTTTTT
*
97476206 AAATAATATTAAAAAATAATTAAATATAA
1 AAATAATA-TAAAAAATAATTAAATAGAA
97476235 AAATAATA-AAAAAATAGATTAAATACGAA
1 AAATAATATAAAAAATA-ATTAAATA-GAA
97476264 AA
1 AA
97476266 TAGATATTTT
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
27 8 0.29
28 8 0.29
29 12 0.43
ACGTcount: A:0.70, C:0.02, G:0.03, T:0.25
Consensus pattern (28 bp):
AAATAATATAAAAAATAATTAAATAGAA
Found at i:97478654 original size:2 final size:2
Alignment explanation
Indices: 97478647--97478680 Score: 59
Period size: 2 Copynumber: 17.0 Consensus size: 2
97478637 AGTGTCCCTC
*
97478647 AT AT AT AT AT AA AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
97478681 TAAATTTTAA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:97483327 original size:25 final size:26
Alignment explanation
Indices: 97483289--97483338 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 26
97483279 AATTGAATAT
* *
97483289 AAAAATCAATTCAGATATCAAATTAG
1 AAAAATCAAATCAGATACCAAATTAG
97483315 AAAAAT-AAATCAGATACCAAATTA
1 AAAAATCAAATCAGATACCAAATTA
97483339 ACAGTGAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 16 0.73
26 6 0.27
ACGTcount: A:0.58, C:0.12, G:0.06, T:0.24
Consensus pattern (26 bp):
AAAAATCAAATCAGATACCAAATTAG
Found at i:97485476 original size:28 final size:27
Alignment explanation
Indices: 97485445--97485497 Score: 72
Period size: 29 Copynumber: 1.9 Consensus size: 27
97485435 TTCTTTTTTT
97485445 TTCT-CCTTTATTTTCCATTCTCTTCTGC
1 TTCTCCCTTTATTTTCC-TTC-CTTCTGC
*
97485473 TTCTCCCTTTGTTTTCCTTCCTTCT
1 TTCTCCCTTTATTTTCCTTCCTTCT
97485498 CCATATCTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
27 5 0.22
28 7 0.30
29 11 0.48
ACGTcount: A:0.04, C:0.34, G:0.04, T:0.58
Consensus pattern (27 bp):
TTCTCCCTTTATTTTCCTTCCTTCTGC
Found at i:97492318 original size:24 final size:25
Alignment explanation
Indices: 97492272--97492318 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
97492262 AACAAACTGG
* * *
97492272 TTCTTCTGTTAAAAATTTTATCAAT
1 TTCTACTGTTAAAAATCTGATCAAT
97492297 TTCTACTGTTAAAAA-CTGATCA
1 TTCTACTGTTAAAAATCTGATCA
97492319 CTATACATTA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
24 5 0.26
25 14 0.74
ACGTcount: A:0.34, C:0.15, G:0.06, T:0.45
Consensus pattern (25 bp):
TTCTACTGTTAAAAATCTGATCAAT
Found at i:97497158 original size:61 final size:62
Alignment explanation
Indices: 97497063--97497187 Score: 164
Period size: 61 Copynumber: 2.0 Consensus size: 62
97497053 CTCAATTTTC
* * *
97497063 AATTCATTTACTTAATTTTAAAAGCAGTCCTACTAACCA-TTTTTTATTACAA-ACATAACGG
1 AATTCATTTACTTAATTTTAAAAGAAATCCTACTAAACATTTTTTTATTA-AAGACATAACGG
* * * *
97497124 AATTCATTTACTTAATTTTAAAATAAATTCTACTAAATATTTTTTTATTAAAGACATAAGGG
1 AATTCATTTACTTAATTTTAAAAGAAATCCTACTAAACATTTTTTTATTAAAGACATAACGG
97497186 AA
1 AA
97497188 AAATAACTTG
Statistics
Matches: 55, Mismatches: 7, Indels: 3
0.85 0.11 0.05
Matches are distributed among these distances:
61 35 0.64
62 20 0.36
ACGTcount: A:0.41, C:0.13, G:0.06, T:0.40
Consensus pattern (62 bp):
AATTCATTTACTTAATTTTAAAAGAAATCCTACTAAACATTTTTTTATTAAAGACATAACGG
Found at i:97505354 original size:2 final size:2
Alignment explanation
Indices: 97505347--97505373 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
97505337 ACCTCATCTA
97505347 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
97505374 ACAAAGTTGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:97507030 original size:30 final size:30
Alignment explanation
Indices: 97506996--97507130 Score: 139
Period size: 30 Copynumber: 4.5 Consensus size: 30
97506986 TAAATCTTAG
* *
97506996 CCTTTTCCACCACCAACTCCACTAGTCACT
1 CCTTTTCCACCACCAACTCCACTAGCCACA
97507026 CCTTTTCCACCACCAACTCCACTAGCCACA
1 CCTTTTCCACCACCAACTCCACTAGCCACA
* * *
97507056 CATTTTCCACCACCAAATTCACTAGCCACA
1 CCTTTTCCACCACCAACTCCACTAGCCACA
* ** * *
97507086 -CTTACTCCATTACCTACTCCACTAACCACA
1 CCTT-TTCCACCACCAACTCCACTAGCCACA
*
97507116 -CTTGCTCCACCACCA
1 CCTT-TTCCACCACCA
97507131 CTTGTACCTA
Statistics
Matches: 87, Mismatches: 17, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
29 2 0.02
30 85 0.98
ACGTcount: A:0.27, C:0.46, G:0.03, T:0.24
Consensus pattern (30 bp):
CCTTTTCCACCACCAACTCCACTAGCCACA
Found at i:97507707 original size:27 final size:25
Alignment explanation
Indices: 97507626--97507747 Score: 74
Period size: 25 Copynumber: 5.0 Consensus size: 25
97507616 ATTATATTTC
* *
97507626 TTAATATTATATTATATATAT-TCT
1 TTAATACTATATTATATATATATAT
* **
97507650 TT--TAATATATTAGGTATAT-T-T
1 TTAATACTATATTATATATATATAT
* *
97507671 TAAATTCTATATTACGTATATATATAT
1 TTAATACTATATTA--TATATATATAT
* * * *
97507698 TTTATACTATTTTATTTATATATCT
1 TTAATACTATATTATATATATATAT
* *
97507723 TTAATATTATATTATTTATATATAT
1 TTAATACTATATTATATATATATAT
97507748 AAATTTTTTT
Statistics
Matches: 74, Mismatches: 18, Indels: 11
0.72 0.17 0.11
Matches are distributed among these distances:
21 2 0.03
22 15 0.20
23 8 0.11
24 2 0.03
25 35 0.47
26 1 0.01
27 11 0.15
ACGTcount: A:0.36, C:0.04, G:0.02, T:0.57
Consensus pattern (25 bp):
TTAATACTATATTATATATATATAT
Found at i:97507717 original size:25 final size:25
Alignment explanation
Indices: 97507689--97507747 Score: 82
Period size: 25 Copynumber: 2.4 Consensus size: 25
97507679 ATATTACGTA
* *
97507689 TATATATATTTTATACTATTTTATT
1 TATATATATTTAATACTATATTATT
* *
97507714 TATATATCTTTAATATTATATTATT
1 TATATATATTTAATACTATATTATT
97507739 TATATATAT
1 TATATATAT
97507748 AAATTTTTTT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 29 1.00
ACGTcount: A:0.36, C:0.03, G:0.00, T:0.61
Consensus pattern (25 bp):
TATATATATTTAATACTATATTATT
Found at i:97507799 original size:22 final size:24
Alignment explanation
Indices: 97507771--97507829 Score: 68
Period size: 25 Copynumber: 2.5 Consensus size: 24
97507761 ACATGTTATC
97507771 TTATGTATATATCTT-A-ACTATA
1 TTATGTATATATCTTAACACTATA
* *
97507793 TTATGTATGTATTTTTAACACTATA
1 TTATGTATATA-TCTTAACACTATA
*
97507818 TTATGTACATAT
1 TTATGTATATAT
97507830 TTTTAATATT
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
22 10 0.33
23 3 0.10
24 2 0.07
25 15 0.50
ACGTcount: A:0.34, C:0.08, G:0.07, T:0.51
Consensus pattern (24 bp):
TTATGTATATATCTTAACACTATA
Found at i:97507819 original size:25 final size:25
Alignment explanation
Indices: 97507787--97507835 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 25
97507777 ATATATCTTA
**
97507787 ACTATATTATGTATGTATTTTTAAC
1 ACTATATTATGTACATATTTTTAAC
97507812 ACTATATTATGTACATATTTTTAA
1 ACTATATTATGTACATATTTTTAA
97507836 TATTATCACG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.35, C:0.08, G:0.06, T:0.51
Consensus pattern (25 bp):
ACTATATTATGTACATATTTTTAAC
Found at i:97508013 original size:16 final size:15
Alignment explanation
Indices: 97507989--97508036 Score: 69
Period size: 16 Copynumber: 3.1 Consensus size: 15
97507979 TAATTATTAT
*
97507989 TATTCTAATATTTTGA
1 TATTTTAATATTTT-A
97508005 TATTTTAATATTTTA
1 TATTTTAATATTTTA
97508020 TATTTTATATATTTTA
1 TATTTTA-ATATTTTA
97508036 T
1 T
97508037 TATTCACATC
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
15 8 0.27
16 22 0.73
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (15 bp):
TATTTTAATATTTTA
Found at i:97508024 original size:7 final size:8
Alignment explanation
Indices: 97507989--97508040 Score: 61
Period size: 8 Copynumber: 6.5 Consensus size: 8
97507979 TAATTATTAT
*
97507989 TATTCTAA
1 TATTTTAA
*
97507997 TATTTTGA
1 TATTTTAA
97508005 TATTTTAA
1 TATTTTAA
97508013 TATTTT-A
1 TATTTTAA
97508020 TATTTTATA
1 TATTTTA-A
*
97508029 TATTTTAT
1 TATTTTAA
97508037 TATT
1 TATT
97508041 CACATCATTG
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
7 7 0.18
8 23 0.61
9 8 0.21
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (8 bp):
TATTTTAA
Found at i:97511603 original size:12 final size:12
Alignment explanation
Indices: 97511586--97511621 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
97511576 AACATTTTGA
97511586 CATTCATACATT
1 CATTCATACATT
**
97511598 CATTCATGTATT
1 CATTCATACATT
97511610 CATTCATACATT
1 CATTCATACATT
97511622 GCATATCCCA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.31, C:0.22, G:0.03, T:0.44
Consensus pattern (12 bp):
CATTCATACATT
Found at i:97520089 original size:75 final size:75
Alignment explanation
Indices: 97519965--97520136 Score: 299
Period size: 75 Copynumber: 2.3 Consensus size: 75
97519955 CAATTTATTT
* * *
97519965 TTTTCAATTTCTGCTCTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGC
1 TTTTCAATTTCTGTTTTTC-AAAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAGGGC
97520030 ACGCTGAGGTA
65 ACGCTGAGGTA
*
97520041 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAGGGCG
1 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAGGGCA
97520106 CGCTGAGGTA
66 CGCTGAGGTA
97520116 TTTTCAATTTCTGTTTTTCAA
1 TTTTCAATTTCTGTTTTTCAA
97520137 TTTCTGCTCT
Statistics
Matches: 92, Mismatches: 4, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
75 75 0.82
76 17 0.18
ACGTcount: A:0.27, C:0.18, G:0.20, T:0.34
Consensus pattern (75 bp):
TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAGGGCA
CGCTGAGGTA
Found at i:97520135 original size:14 final size:14
Alignment explanation
Indices: 97520116--97520142 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
97520106 CGCTGAGGTA
97520116 TTTTCAATTTCTGT
1 TTTTCAATTTCTGT
97520130 TTTTCAATTTCTG
1 TTTTCAATTTCTG
97520143 CTCTTCAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.15, C:0.15, G:0.07, T:0.63
Consensus pattern (14 bp):
TTTTCAATTTCTGT
Found at i:97520192 original size:89 final size:89
Alignment explanation
Indices: 97520041--97520311 Score: 443
Period size: 89 Copynumber: 3.0 Consensus size: 89
97520031 CGCTGAGGTA
* * * *
97520041 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAGGGCG
1 TTTTCAATTTCTGCTCTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCA
97520106 CGCTGAGGTATTTTCAATTTCTGT
66 CGCTGAGGTATTTTCAATTTCTGT
* * *
97520130 TTTTCAATTTCTGCTCTTCAAAAAAATCAACTCATATTGCGAGAGTTAAGTTGAGCTTCAGGGCA
1 TTTTCAATTTCTGCTCTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCA
* *
97520195 CGCTGAGGTAATTTCAATTTATGT
66 CGCTGAGGTATTTTCAATTTCTGT
*
97520219 TTTTCAATTTCTTCTCTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGC
1 TTTTCAATTTCTGCTCTTC-AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGC
97520284 ACGCTGAGGTATTTTCAATTTCTGT
65 ACGCTGAGGTATTTTCAATTTCTGT
97520309 TTT
1 TTT
97520312 GAAGCACGCT
Statistics
Matches: 166, Mismatches: 15, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
89 98 0.59
90 68 0.41
ACGTcount: A:0.27, C:0.17, G:0.19, T:0.37
Consensus pattern (89 bp):
TTTTCAATTTCTGCTCTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCA
CGCTGAGGTATTTTCAATTTCTGT
Found at i:97520413 original size:108 final size:109
Alignment explanation
Indices: 97520219--97520415 Score: 360
Period size: 108 Copynumber: 1.8 Consensus size: 109
97520209 CAATTTATGT
*
97520219 TTTTCAATTTCTTCTCTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGC
1 TTTTCAATTTCTGCTCTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGC
97520284 ACGCTGAGGTATTTTCAATTTCTGTTTTGAAGCACGCTGAGGTA
66 ACGCTGAGGTATTTTCAATTTCTGTTTTGAAGCACGCTGAGGTA
*
97520328 TTTTCAATTTCTGCTCTTC-AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGT
1 TTTTCAATTTCTGCTCTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGC
*
97520392 ACGCTGAGGTATTTTCGATTTCTG
66 ACGCTGAGGTATTTTCAATTTCTG
97520416 CTTTCCAATT
Statistics
Matches: 85, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
108 67 0.79
109 18 0.21
ACGTcount: A:0.26, C:0.18, G:0.21, T:0.35
Consensus pattern (109 bp):
TTTTCAATTTCTGCTCTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGC
ACGCTGAGGTATTTTCAATTTCTGTTTTGAAGCACGCTGAGGTA
Found at i:97520485 original size:89 final size:90
Alignment explanation
Indices: 97520332--97520528 Score: 324
Period size: 89 Copynumber: 2.2 Consensus size: 90
97520322 GAGGTATTTT
*
97520332 CAATTTCTGCTCTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGTACGCT
1 CAATTTCTGCTCTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCT
*
97520397 GAGGTATTTTCGATTTCTG-CTTTC
66 GAGGTATTTTCAATTTCTGTCTTTC
97520421 CAATTTCTGCTCTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCT
1 CAATTTCTGCTCTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCT
* * *
97520486 GAGGTATTTTCAATTTTTGTTTTTT
66 GAGGTATTTTCAATTTCTGTCTTTC
* *
97520511 CAATTTATGCTTTTCAAA
1 CAATTTCTGCTCTTCAAA
97520529 TTCTGCTTTT
Statistics
Matches: 100, Mismatches: 7, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
89 81 0.81
90 19 0.19
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.36
Consensus pattern (90 bp):
CAATTTCTGCTCTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCT
GAGGTATTTTCAATTTCTGTCTTTC
Found at i:97520524 original size:15 final size:15
Alignment explanation
Indices: 97520492--97520539 Score: 53
Period size: 15 Copynumber: 3.3 Consensus size: 15
97520482 CGCTGAGGTA
* *
97520492 TTTTCAATTTTTGTT
1 TTTTCAATTTATGCT
97520507 TTTTCAATTTATGC-
1 TTTTCAATTTATGCT
* *
97520521 TTTTCAAATTCTGCT
1 TTTTCAATTTATGCT
97520536 TTTT
1 TTTT
97520540 AAAAAATCAA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
14 12 0.43
15 16 0.57
ACGTcount: A:0.17, C:0.12, G:0.06, T:0.65
Consensus pattern (15 bp):
TTTTCAATTTATGCT
Found at i:97521435 original size:30 final size:30
Alignment explanation
Indices: 97521401--97521535 Score: 157
Period size: 30 Copynumber: 4.5 Consensus size: 30
97521391 TAAATCTTAG
*
97521401 CCTTTTCCACCACCAACTCCACTAGCCACT
1 CCTTTTCCACCACCAACTCCACTAGCCACA
97521431 CCTTTTCCACCACCAACTCCACTAGCCACA
1 CCTTTTCCACCACCAACTCCACTAGCCACA
* *
97521461 CATTTTCCACCACCAAATCCACTAGCCACA
1 CCTTTTCCACCACCAACTCCACTAGCCACA
* ** * *
97521491 -CTTGCTCCATTACCTACTCCACTAACCACA
1 CCTT-TTCCACCACCAACTCCACTAGCCACA
*
97521521 -CTTGCTCCACCACCA
1 CCTT-TTCCACCACCA
97521536 CTTGTACCTA
Statistics
Matches: 91, Mismatches: 13, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
29 2 0.02
30 89 0.98
ACGTcount: A:0.27, C:0.47, G:0.04, T:0.22
Consensus pattern (30 bp):
CCTTTTCCACCACCAACTCCACTAGCCACA
Found at i:97522056 original size:23 final size:23
Alignment explanation
Indices: 97522019--97522148 Score: 74
Period size: 23 Copynumber: 5.5 Consensus size: 23
97522009 TTTTTTTTGT
97522019 TATTAT-TATATTTCTTAATATTA
1 TATTATATATA-TTCTTAATATTA
* *
97522042 TATTATATATATTCTT-TTAATA
1 TATTATATATATTCTTAATATTA
**
97522064 TATTAGGTATATT-TTAA-ATTCTA
1 TATTATATATATTCTTAATA-T-TA
* *
97522087 TATTACGTATATATATTTTATACTATTT
1 TATTA--TATATAT-TCTTA-A-TATTA
97522115 TATT-TATATA-TCTTTAATATTA
1 TATTATATATATTC-TTAATATTA
*
97522137 TATTATTTATAT
1 TATTATATATAT
97522149 ATATAAATTT
Statistics
Matches: 81, Mismatches: 12, Indels: 27
0.68 0.10 0.22
Matches are distributed among these distances:
21 3 0.04
22 23 0.28
23 25 0.31
24 7 0.09
25 11 0.14
26 1 0.01
27 3 0.04
28 6 0.07
29 1 0.01
30 1 0.01
ACGTcount: A:0.35, C:0.05, G:0.02, T:0.58
Consensus pattern (23 bp):
TATTATATATATTCTTAATATTA
Found at i:97522124 original size:27 final size:25
Alignment explanation
Indices: 97522036--97522152 Score: 85
Period size: 25 Copynumber: 4.7 Consensus size: 25
97522026 ATATTTCTTA
** *
97522036 ATATTATATTATATATATTCTTTTAAT
1 ATATTAT-TTATATATATT-TAATACT
** * *
97522063 ATATTAGGTATAT-T-TTAAATTCT
1 ATATTATTTATATATATTTAATACT
** *
97522086 ATATTACGTATATATATTTTATACT
1 ATATTATTTATATATATTTAATACT
* * *
97522111 ATTTTATTTATATATCTTTAATATT
1 ATATTATTTATATATATTTAATACT
97522136 ATATTATTTATATATAT
1 ATATTATTTATATATAT
97522153 AAATTTTTTT
Statistics
Matches: 69, Mismatches: 19, Indels: 6
0.73 0.20 0.06
Matches are distributed among these distances:
23 14 0.20
24 3 0.04
25 41 0.59
26 5 0.07
27 6 0.09
ACGTcount: A:0.36, C:0.04, G:0.03, T:0.57
Consensus pattern (25 bp):
ATATTATTTATATATATTTAATACT
Found at i:97522204 original size:22 final size:24
Alignment explanation
Indices: 97522176--97522234 Score: 68
Period size: 25 Copynumber: 2.5 Consensus size: 24
97522166 ACATGTTATC
97522176 TTATGTATATATCTT-A-ACTATA
1 TTATGTATATATCTTAACACTATA
* *
97522198 TTATGTATGTATTTTTAACACTATA
1 TTATGTATATA-TCTTAACACTATA
*
97522223 TTATGTACATAT
1 TTATGTATATAT
97522235 TTTTAATATT
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
22 10 0.33
23 3 0.10
24 2 0.07
25 15 0.50
ACGTcount: A:0.34, C:0.08, G:0.07, T:0.51
Consensus pattern (24 bp):
TTATGTATATATCTTAACACTATA
Found at i:97522224 original size:25 final size:25
Alignment explanation
Indices: 97522192--97522240 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 25
97522182 ATATATCTTA
**
97522192 ACTATATTATGTATGTATTTTTAAC
1 ACTATATTATGTACATATTTTTAAC
97522217 ACTATATTATGTACATATTTTTAA
1 ACTATATTATGTACATATTTTTAA
97522241 TATTATCACG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.35, C:0.08, G:0.06, T:0.51
Consensus pattern (25 bp):
ACTATATTATGTACATATTTTTAAC
Found at i:97522419 original size:16 final size:15
Alignment explanation
Indices: 97522395--97522442 Score: 69
Period size: 16 Copynumber: 3.1 Consensus size: 15
97522385 TAATTATTAT
*
97522395 TATTCTAATATTTTGA
1 TATTTTAATATTTT-A
97522411 TATTTTAATATTTTA
1 TATTTTAATATTTTA
97522426 TATTTTATATATTTTA
1 TATTTTA-ATATTTTA
97522442 T
1 T
97522443 TATTCATATC
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
15 8 0.27
16 22 0.73
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (15 bp):
TATTTTAATATTTTA
Found at i:97522430 original size:7 final size:8
Alignment explanation
Indices: 97522395--97522446 Score: 61
Period size: 8 Copynumber: 6.5 Consensus size: 8
97522385 TAATTATTAT
*
97522395 TATTCTAA
1 TATTTTAA
*
97522403 TATTTTGA
1 TATTTTAA
97522411 TATTTTAA
1 TATTTTAA
97522419 TATTTT-A
1 TATTTTAA
97522426 TATTTTATA
1 TATTTTA-A
*
97522435 TATTTTAT
1 TATTTTAA
97522443 TATT
1 TATT
97522447 CATATCATTG
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
7 7 0.18
8 23 0.61
9 8 0.21
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (8 bp):
TATTTTAA
Found at i:97523013 original size:2 final size:2
Alignment explanation
Indices: 97523006--97523044 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
97522996 ACGTCGCTAC
97523006 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
97523045 ATTACTTCAT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:97523307 original size:5 final size:5
Alignment explanation
Indices: 97523297--97523342 Score: 65
Period size: 5 Copynumber: 8.6 Consensus size: 5
97523287 TTAAAAATAT
97523297 TTATA TTATA TTATA TTATA TTATA TTAATA TTAATA TTAATA TTA
1 TTATA TTATA TTATA TTATA TTATA TT-ATA TT-ATA TT-ATA TTA
97523343 ATAATTTTAT
Statistics
Matches: 40, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
5 23 0.57
6 17 0.43
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (5 bp):
TTATA
Found at i:97523330 original size:6 final size:6
Alignment explanation
Indices: 97523292--97523345 Score: 71
Period size: 6 Copynumber: 9.7 Consensus size: 6
97523282 ATTTTTTAAA
*
97523292 AATATT TATATT -ATATT -ATATT -ATATT -ATATT AATATT AATATT
1 AATATT AATATT AATATT AATATT AATATT AATATT AATATT AATATT
97523336 AATATT AATA
1 AATATT AATA
97523346 ATTTTATTTT
Statistics
Matches: 46, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
5 20 0.43
6 26 0.57
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (6 bp):
AATATT
Found at i:97524222 original size:131 final size:131
Alignment explanation
Indices: 97523978--97524310 Score: 424
Period size: 131 Copynumber: 2.6 Consensus size: 131
97523968 AAAAAATCGA
* ** * * * * * * *
97523978 AACCCAGCACGGTAGGGCACGATTTCTCGAATTTCCAAACTTTGAACATTGTCTT-ATTTT--AG
1 AACCCAGCACGATAGGGCACGATCCCCCAAATTGCCAAACATAGAACATTGCCTTCGTTTTAAAG
** * * * * * *
97524040 AATTTAGAAA-ACGTGAGTGAATTTCTAAAGGGATATTCGATTGTTTTGAACAAACGGGAAATTG
66 AATTTTTAAAGACATGAGTGAAATTCCAAAGGAATACTCGATTATTTTGAACAAACGGGAAATTG
97524104 C
131 C
*
97524105 AACCCAGCACGATAGGGCACGATCCCCCAAATTGCCAAACATTA-AACGTTGCCTTCGTTTTAAA
1 AACCCAGCACGATAGGGCACGATCCCCCAAATTGCCAAACA-TAGAACATTGCCTTCGTTTTAAA
97524169 GAATTTTTAAAGACATGAGTGAAATTCCAAAGGAATACTCGATTATTTTGAACAAACGGGAAATT
65 GAATTTTTAAAGACATGAGTGAAATTCCAAAGGAATACTCGATTATTTTGAACAAACGGGAAATT
97524234 GC
130 GC
* * *
97524236 AACCCAGCACGATAGGGCACGATTCTCCGAATTGCCAAACATAGAACATTGCCTTCGTTTTAAAG
1 AACCCAGCACGATAGGGCACGATCCCCCAAATTGCCAAACATAGAACATTGCCTTCGTTTTAAAG
97524301 AATTTTTAAA
66 AATTTTTAAA
97524311 TGAATAATTA
Statistics
Matches: 177, Mismatches: 23, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
127 43 0.24
128 5 0.03
130 12 0.07
131 117 0.66
ACGTcount: A:0.35, C:0.19, G:0.18, T:0.28
Consensus pattern (131 bp):
AACCCAGCACGATAGGGCACGATCCCCCAAATTGCCAAACATAGAACATTGCCTTCGTTTTAAAG
AATTTTTAAAGACATGAGTGAAATTCCAAAGGAATACTCGATTATTTTGAACAAACGGGAAATTG
C
Found at i:97525294 original size:2 final size:2
Alignment explanation
Indices: 97525287--97525317 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
97525277 TTATAAAGTG
97525287 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
97525318 GATAGTGTAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:97526338 original size:40 final size:40
Alignment explanation
Indices: 97526294--97526373 Score: 160
Period size: 40 Copynumber: 2.0 Consensus size: 40
97526284 GAAAGAAAGA
97526294 AAGAAAAAAAGTAGATAAAAAATACAATATTTGTTCTTTG
1 AAGAAAAAAAGTAGATAAAAAATACAATATTTGTTCTTTG
97526334 AAGAAAAAAAGTAGATAAAAAATACAATATTTGTTCTTTG
1 AAGAAAAAAAGTAGATAAAAAATACAATATTTGTTCTTTG
97526374 TTTTGCTGTG
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.53, C:0.05, G:0.12, T:0.30
Consensus pattern (40 bp):
AAGAAAAAAAGTAGATAAAAAATACAATATTTGTTCTTTG
Found at i:97534758 original size:14 final size:14
Alignment explanation
Indices: 97534717--97534768 Score: 50
Period size: 14 Copynumber: 3.6 Consensus size: 14
97534707 ACAAATCAAT
*
97534717 AATATTAATGATTAA
1 AATA-TAATAATTAA
*
97534732 AACATAATAAATTAA
1 AATATAAT-AATTAA
* *
97534747 AATTTAATAATTGA
1 AATATAATAATTAA
97534761 AATATAAT
1 AATATAAT
97534769 TTAAATAATA
Statistics
Matches: 30, Mismatches: 6, Indels: 3
0.77 0.15 0.08
Matches are distributed among these distances:
14 16 0.53
15 14 0.47
ACGTcount: A:0.58, C:0.02, G:0.04, T:0.37
Consensus pattern (14 bp):
AATATAATAATTAA
Found at i:97541845 original size:17 final size:17
Alignment explanation
Indices: 97541823--97541880 Score: 107
Period size: 17 Copynumber: 3.4 Consensus size: 17
97541813 CACGGCCGAA
97541823 CCACACGCCCGTGTGTC
1 CCACACGCCCGTGTGTC
97541840 CCACACGCCCGTGTGTC
1 CCACACGCCCGTGTGTC
97541857 CCACACGCCCGTGTGTC
1 CCACACGCCCGTGTGTC
*
97541874 ACACACG
1 CCACACG
97541881 GCTGAGACAC
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
17 40 1.00
ACGTcount: A:0.16, C:0.47, G:0.22, T:0.16
Consensus pattern (17 bp):
CCACACGCCCGTGTGTC
Found at i:97542812 original size:25 final size:25
Alignment explanation
Indices: 97542777--97542894 Score: 98
Period size: 25 Copynumber: 4.8 Consensus size: 25
97542767 CTCACTCTCA
*
97542777 AGCCATATAACAGGAAGCTCATGTG
1 AGCCATATAACAGGAAGCTCATGAG
* * * **
97542802 AGCCATGTAACAAGAAGCTTATCCG
1 AGCCATATAACAGGAAGCTCATGAG
*
97542827 GGCCATATAACAGGAAGCTC-TGAAG
1 AGCCATATAACAGGAAGCTCATG-AG
* **
97542852 AGCCATAT-TCAGGAAGCTCATTCG
1 AGCCATATAACAGGAAGCTCATGAG
* *
97542876 AGCC-TATAATAGGTAGCTC
1 AGCCATATAACAGGAAGCTC
97542895 CGAAGAGCCA
Statistics
Matches: 72, Mismatches: 18, Indels: 7
0.74 0.19 0.07
Matches are distributed among these distances:
23 3 0.04
24 24 0.33
25 45 0.62
ACGTcount: A:0.34, C:0.22, G:0.23, T:0.21
Consensus pattern (25 bp):
AGCCATATAACAGGAAGCTCATGAG
Found at i:97542855 original size:50 final size:49
Alignment explanation
Indices: 97542777--97542905 Score: 136
Period size: 50 Copynumber: 2.6 Consensus size: 49
97542767 CTCACTCTCA
* * *
97542777 AGCCATATAACAGGAAGCTCATG-TGAGCCATGTAACAAGAAGCTTATCCG
1 AGCCATATAACAGGAAGCTC-TGAAGAGCCATAT-ACAAGAAGCTCATCCG
* * * *
97542827 GGCCATATAACAGGAAGCTCTGAAGAGCCATATTCAGGAAGCTCATTCG
1 AGCCATATAACAGGAAGCTCTGAAGAGCCATATACAAGAAGCTCATCCG
* * *
97542876 AGCC-TATAATAGGTAGCTCCGAAGAGCCAT
1 AGCCATATAACAGGAAGCTCTGAAGAGCCAT
97542906 TAATCGGGGA
Statistics
Matches: 67, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
48 23 0.34
49 17 0.25
50 27 0.40
ACGTcount: A:0.34, C:0.22, G:0.23, T:0.20
Consensus pattern (49 bp):
AGCCATATAACAGGAAGCTCTGAAGAGCCATATACAAGAAGCTCATCCG
Found at i:97543490 original size:21 final size:21
Alignment explanation
Indices: 97543466--97543505 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
97543456 TAAATTTAAC
* *
97543466 TCAATTTAATGCAATTCACAT
1 TCAATTCAATCCAATTCACAT
97543487 TCAATTCAATCCAATTCAC
1 TCAATTCAATCCAATTCAC
97543506 GTCTTAGGAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.38, C:0.25, G:0.03, T:0.35
Consensus pattern (21 bp):
TCAATTCAATCCAATTCACAT
Found at i:97548752 original size:105 final size:105
Alignment explanation
Indices: 97548593--97548794 Score: 298
Period size: 105 Copynumber: 1.9 Consensus size: 105
97548583 CACGCTGACA
* * * *
97548593 CTCATAAGAACTGGTCCAACTGAATCACGCCAATGCTCATAAGAGCTAGTCCAACCGTAACATGC
1 CTCATAAGAACTAGTCCAACTAAATCACGCCAATGCTCATAAGAGCTAGCCCAACCGTAACACGC
* *
97548658 CAATGCTCATAAGAGCTAGTCCAACCGTAACATGCCAATT
66 CAATGCTCATAAGAGCTAATCCAACCGAAACATGCCAATT
* * *
97548698 CTCATAAGATCTAGTCCAA-TCAAATTACGCCAATGCTCATAAGAGCTAGCCCAACTGTAACACG
1 CTCATAAGAACTAGTCCAACT-AAATCACGCCAATGCTCATAAGAGCTAGCCCAACCGTAACACG
*
97548762 CCAATGCTCATAAGAGCTAATCTAACCGAAACA
65 CCAATGCTCATAAGAGCTAATCCAACCGAAACA
97548795 CACCAAAAAG
Statistics
Matches: 86, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
104 1 0.01
105 85 0.99
ACGTcount: A:0.36, C:0.28, G:0.15, T:0.21
Consensus pattern (105 bp):
CTCATAAGAACTAGTCCAACTAAATCACGCCAATGCTCATAAGAGCTAGCCCAACCGTAACACGC
CAATGCTCATAAGAGCTAATCCAACCGAAACATGCCAATT
Found at i:97548795 original size:35 final size:35
Alignment explanation
Indices: 97548570--97548800 Score: 241
Period size: 35 Copynumber: 6.6 Consensus size: 35
97548560 GTACATCGTC
* ** ** *
97548570 AGTCCAACCATAACACGCTGACACTCATAAGAACT
1 AGTCCAACCGTAACACGCCAATGCTCATAAGAGCT
* *
97548605 GGTCCAACTG-AATCACGCCAATGCTCATAAGAGCT
1 AGTCCAACCGTAA-CACGCCAATGCTCATAAGAGCT
*
97548640 AGTCCAACCGTAACATGCCAATGCTCATAAGAGCT
1 AGTCCAACCGTAACACGCCAATGCTCATAAGAGCT
* * *
97548675 AGTCCAACCGTAACATGCCAATTCTCATAAGATCT
1 AGTCCAACCGTAACACGCCAATGCTCATAAGAGCT
* * *
97548710 AGTCCAATC-AAATTACGCCAATGCTCATAAGAGCT
1 AGTCCAACCGTAA-CACGCCAATGCTCATAAGAGCT
* *
97548745 AGCCCAACTGTAACACGCCAATGCTCATAAGAGCT
1 AGTCCAACCGTAACACGCCAATGCTCATAAGAGCT
* * * *
97548780 AATCTAACCGAAACACACCAA
1 AGTCCAACCGTAACACGCCAA
97548801 AAAGAGAGTA
Statistics
Matches: 162, Mismatches: 30, Indels: 8
0.81 0.15 0.04
Matches are distributed among these distances:
34 4 0.02
35 154 0.95
36 4 0.02
ACGTcount: A:0.37, C:0.29, G:0.14, T:0.19
Consensus pattern (35 bp):
AGTCCAACCGTAACACGCCAATGCTCATAAGAGCT
Found at i:97549619 original size:31 final size:32
Alignment explanation
Indices: 97549583--97549651 Score: 81
Period size: 32 Copynumber: 2.2 Consensus size: 32
97549573 ATAATTTAGT
97549583 CATTTTTGACTTTT-TACAA-AAGTACCCCTAA
1 CATTTTT-ACTTTTATACAATAAGTACCCCTAA
* *
97549614 CA-TTTTACTTTTATTCAATTTAGTACCCCTAA
1 CATTTTTACTTTTATACAA-TAAGTACCCCTAA
97549646 CATTTT
1 CATTTT
97549652 ATATAATTTA
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
29 6 0.19
30 8 0.25
31 2 0.06
32 13 0.41
33 3 0.09
ACGTcount: A:0.29, C:0.22, G:0.04, T:0.45
Consensus pattern (32 bp):
CATTTTTACTTTTATACAATAAGTACCCCTAA
Found at i:97556015 original size:37 final size:37
Alignment explanation
Indices: 97555960--97556035 Score: 134
Period size: 37 Copynumber: 2.1 Consensus size: 37
97555950 CATGTATGTT
*
97555960 AGCTTAATTAGTAATTGCATTAACAATCCTCAAATCA
1 AGCTCAATTAGTAATTGCATTAACAATCCTCAAATCA
*
97555997 AGCTCAATTAGTAATTGCATTAACAGTCCTCAAATCA
1 AGCTCAATTAGTAATTGCATTAACAATCCTCAAATCA
97556034 AG
1 AG
97556036 TTATTAATTA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.39, C:0.20, G:0.11, T:0.30
Consensus pattern (37 bp):
AGCTCAATTAGTAATTGCATTAACAATCCTCAAATCA
Found at i:97558104 original size:11 final size:11
Alignment explanation
Indices: 97558088--97558114 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
97558078 AATGTTAGAT
97558088 TTGCTTAGAAA
1 TTGCTTAGAAA
97558099 TTGCTTAGAAA
1 TTGCTTAGAAA
97558110 TTGCT
1 TTGCT
97558115 CATTTCAAGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.30, C:0.11, G:0.19, T:0.41
Consensus pattern (11 bp):
TTGCTTAGAAA
Found at i:97562803 original size:17 final size:17
Alignment explanation
Indices: 97562776--97562808 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
97562766 TTACTATAGT
97562776 TTTATTTCACATATTCAC
1 TTTATTTCACA-ATTCAC
97562794 TTTA-TTCACAATTCA
1 TTTATTTCACAATTCA
97562809 TCATAATACT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 5 0.33
17 6 0.40
18 4 0.27
ACGTcount: A:0.30, C:0.21, G:0.00, T:0.48
Consensus pattern (17 bp):
TTTATTTCACAATTCAC
Found at i:97562963 original size:49 final size:49
Alignment explanation
Indices: 97562910--97563021 Score: 129
Period size: 49 Copynumber: 2.3 Consensus size: 49
97562900 ATAAATATAA
* * *
97562910 ATATTTATATTAAATACAATATCTAAAC-AAA-TAATATAAACAAATATTT
1 ATATTTAT-TTAAACACAAGATCTAAACAAAACAAAT-TAAACAAATATTT
* * *
97562959 ATATTTATGTAAAACACCAGATCTAAACAAAACAAATTAAATAAATATTT
1 ATATTTAT-TTAAACACAAGATCTAAACAAAACAAATTAAACAAATATTT
97563009 ATATTTATTTAAA
1 ATATTTATTTAAA
97563022 ACATCAGATC
Statistics
Matches: 53, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
49 27 0.51
50 23 0.43
51 3 0.06
ACGTcount: A:0.54, C:0.09, G:0.02, T:0.36
Consensus pattern (49 bp):
ATATTTATTTAAACACAAGATCTAAACAAAACAAATTAAACAAATATTT
Found at i:97563015 original size:50 final size:49
Alignment explanation
Indices: 97562930--97563047 Score: 152
Period size: 50 Copynumber: 2.4 Consensus size: 49
97562920 TAAATACAAT
* *
97562930 ATCTAAAC-AAATAATATAAACAAATATTTATATTTATGTAAAACACCAG
1 ATCTAAACAAAACAAT-TAAATAAATATTTATATTTATGTAAAACACCAG
* *
97562979 ATCTAAACAAAACAAATTAAATAAATATTTATATTTATTTAAAACATCAG
1 ATCTAAACAAAAC-AATTAAATAAATATTTATATTTATGTAAAACACCAG
*
97563029 ATCT-GA-AAAACAATTAAAT
1 ATCTAAACAAAACAATTAAAT
97563048 CGATGCTCAA
Statistics
Matches: 62, Mismatches: 5, Indels: 6
0.85 0.07 0.08
Matches are distributed among these distances:
47 8 0.13
48 5 0.08
49 9 0.15
50 37 0.60
51 3 0.05
ACGTcount: A:0.54, C:0.11, G:0.03, T:0.31
Consensus pattern (49 bp):
ATCTAAACAAAACAATTAAATAAATATTTATATTTATGTAAAACACCAG
Found at i:97563476 original size:29 final size:29
Alignment explanation
Indices: 97563434--97563491 Score: 107
Period size: 29 Copynumber: 2.0 Consensus size: 29
97563424 ATTAAATGAC
*
97563434 TAAGCTTGAAACTCTAACTCGCACGTAAG
1 TAAGCTTAAAACTCTAACTCGCACGTAAG
97563463 TAAGCTTAAAACTCTAACTCGCACGTAAG
1 TAAGCTTAAAACTCTAACTCGCACGTAAG
97563492 GGGGTGCAAT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.36, C:0.24, G:0.16, T:0.24
Consensus pattern (29 bp):
TAAGCTTAAAACTCTAACTCGCACGTAAG
Found at i:97577059 original size:19 final size:21
Alignment explanation
Indices: 97577026--97577077 Score: 65
Period size: 19 Copynumber: 2.6 Consensus size: 21
97577016 ATTCTATTTT
* *
97577026 TTATAT-ATATTTTTTGAATC
1 TTATATAATTTTTTTTAAATC
97577046 TT-T-TAATTTTTTTTAAATC
1 TTATATAATTTTTTTTAAATC
97577065 TTATATAATTTTT
1 TTATATAATTTTT
97577078 GATAATTTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
18 1 0.04
19 15 0.56
20 3 0.11
21 8 0.30
ACGTcount: A:0.29, C:0.04, G:0.02, T:0.65
Consensus pattern (21 bp):
TTATATAATTTTTTTTAAATC
Found at i:97578694 original size:30 final size:30
Alignment explanation
Indices: 97578660--97578721 Score: 124
Period size: 30 Copynumber: 2.1 Consensus size: 30
97578650 ACACCATTAT
97578660 TATTGCAATAATTAGTAGAATGTGAGTTTA
1 TATTGCAATAATTAGTAGAATGTGAGTTTA
97578690 TATTGCAATAATTAGTAGAATGTGAGTTTA
1 TATTGCAATAATTAGTAGAATGTGAGTTTA
97578720 TA
1 TA
97578722 CATGCTTAAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.37, C:0.03, G:0.19, T:0.40
Consensus pattern (30 bp):
TATTGCAATAATTAGTAGAATGTGAGTTTA
Found at i:97585064 original size:20 final size:20
Alignment explanation
Indices: 97585039--97585081 Score: 86
Period size: 20 Copynumber: 2.1 Consensus size: 20
97585029 TCATTAAGTT
97585039 TGGTTATTTCCAAAATTTTA
1 TGGTTATTTCCAAAATTTTA
97585059 TGGTTATTTCCAAAATTTTA
1 TGGTTATTTCCAAAATTTTA
97585079 TGG
1 TGG
97585082 GACAAACATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.28, C:0.09, G:0.14, T:0.49
Consensus pattern (20 bp):
TGGTTATTTCCAAAATTTTA
Found at i:97588026 original size:26 final size:26
Alignment explanation
Indices: 97587990--97588041 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
97587980 GTTAATGGAG
*
97587990 TTAGGGTTTAAAGAATATTGTATATA
1 TTAGGGTTTAAAGAATATTGCATATA
*
97588016 TTAGGGTTTAAAGAGTATTGCATATA
1 TTAGGGTTTAAAGAATATTGCATATA
97588042 AATTAATAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.37, C:0.02, G:0.21, T:0.40
Consensus pattern (26 bp):
TTAGGGTTTAAAGAATATTGCATATA
Found at i:97595860 original size:82 final size:83
Alignment explanation
Indices: 97595669--97595992 Score: 326
Period size: 83 Copynumber: 3.9 Consensus size: 83
97595659 TATATCTCCA
* * * * * *
97595669 AAATAAAAACTTGGTGTGATTCAAGGCCAAAAGGTTTAAACCTTTTTCATACAAACCCCCCAATT
1 AAATCAAAACTTGGTCTTAATCAAGACCAAAAGG-TTAAA-CTTTTTCATACAAACCCCACAATT
97595734 TCCCTAACAAATT-AAATAAC
64 TCCCTAAC-AATTCAAATAAC
* *
97595754 AGA-CAAAAACTTGATCTTAATCAAGACCAAAAGGTTAAAC-TTTTCATACAAACCCCA-AATTT
1 AAATC-AAAACTTGGTCTTAATCAAGACCAAAAGGTTAAACTTTTTCATACAAACCCCACAATTT
97595816 CCCTAACAATTCAAATAAC
65 CCCTAACAATTCAAATAAC
* * * * * *
97595835 AAATCAGAACTTTGGTCTTAATCAAGGCTAAAAAGCTTACA-TTTTTCATTCAAA-CCCACAATT
1 AAATCAAAAC-TTGGTCTTAATCAAGAC-CAAAAGGTTAAACTTTTTCATACAAACCCCACAATT
*
97595898 TCCATAACAATTCAAATAA-
64 TCCCTAACAATTCAAATAAC
* * *
97595917 ACAATCACAACTTGGTTTTATTCAA-AGCC-AAA-GTTCAAACTTTTTTCATACAAACCCCACAA
1 A-AATCAAAACTTGGTCTTAATCAAGA-CCAAAAGGTT-AAAC-TTTTTCATACAAACCCCACAA
97595979 TTTCCCTAACAATT
62 TTTCCCTAACAATT
97595993 AAGACCAAAA
Statistics
Matches: 200, Mismatches: 26, Indels: 28
0.79 0.10 0.11
Matches are distributed among these distances:
79 2 0.01
80 9 0.05
81 25 0.12
82 62 0.31
83 71 0.35
84 5 0.03
85 26 0.13
ACGTcount: A:0.41, C:0.23, G:0.07, T:0.28
Consensus pattern (83 bp):
AAATCAAAACTTGGTCTTAATCAAGACCAAAAGGTTAAACTTTTTCATACAAACCCCACAATTTC
CCTAACAATTCAAATAAC
Found at i:97596201 original size:79 final size:83
Alignment explanation
Indices: 97596051--97596278 Score: 226
Period size: 79 Copynumber: 2.8 Consensus size: 83
97596041 AAATCAGAAC
* * *
97596051 TTGGTCTCAATCAAGGCCAAAAGGTTTAAACTTTTTTCATACAAACCCTCAATTTCCTTCACAAT
1 TTGGTCTCAATCAAAGCCAAAAGGTTTAAAC-TTTTTAATACAAACCCACAATTTCCTTCACAAT
97596116 CCAAATAAACAATCAAATT
65 CCAAATAAACAATCAAATT
* * * *
97596135 TTGGTTTCAATCAAAGCC-AAA-GTTTGAAC-TTTTAATAC-AACCCACAATTTCCTTCACGATT
1 TTGGTCTCAATCAAAGCCAAAAGGTTTAAACTTTTTAATACAAACCCACAATTTCCTTCACAATC
* *
97596196 CAAATAAACAATCAGGACT
66 CAAATAAACAATCA-AATT
* * * *
97596215 TT-GT-T---TCAAGGCCAAAAGG-TTAAACTTTTTCATACAAACCC-CTAATTTCCCTAACAAT
1 TTGGTCTCAATCAAAGCCAAAAGGTTTAAACTTTTTAATACAAACCCAC-AATTTCCTTCACAAT
*
97596273 TCAAAT
65 CCAAAT
97596279 GAACCCTTTT
Statistics
Matches: 123, Mismatches: 15, Indels: 18
0.79 0.10 0.12
Matches are distributed among these distances:
75 7 0.06
76 8 0.07
77 10 0.08
78 24 0.20
79 36 0.29
80 12 0.10
82 7 0.06
83 3 0.02
84 16 0.13
ACGTcount: A:0.37, C:0.23, G:0.08, T:0.31
Consensus pattern (83 bp):
TTGGTCTCAATCAAAGCCAAAAGGTTTAAACTTTTTAATACAAACCCACAATTTCCTTCACAATC
CAAATAAACAATCAAATT
Found at i:97597974 original size:86 final size:86
Alignment explanation
Indices: 97597872--97598031 Score: 320
Period size: 86 Copynumber: 1.9 Consensus size: 86
97597862 TGTCTTTTTA
97597872 ATATATATATATGGTAATACGAATTATGAAATTTGAACTCACGACATCATATTTTTAAATTTTGA
1 ATATATATATATGGTAATACGAATTATGAAATTTGAACTCACGACATCATATTTTTAAATTTTGA
97597937 CTACTTAATATTTTAATATAT
66 CTACTTAATATTTTAATATAT
97597958 ATATATATATATGGTAATACGAATTATGAAATTTGAACTCACGACATCATATTTTTAAATTTTGA
1 ATATATATATATGGTAATACGAATTATGAAATTTGAACTCACGACATCATATTTTTAAATTTTGA
97598023 CTACTTAAT
66 CTACTTAAT
97598032 TATACAATTT
Statistics
Matches: 74, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
86 74 1.00
ACGTcount: A:0.39, C:0.10, G:0.09, T:0.42
Consensus pattern (86 bp):
ATATATATATATGGTAATACGAATTATGAAATTTGAACTCACGACATCATATTTTTAAATTTTGA
CTACTTAATATTTTAATATAT
Found at i:97603662 original size:4 final size:4
Alignment explanation
Indices: 97603653--97603681 Score: 58
Period size: 4 Copynumber: 7.2 Consensus size: 4
97603643 CTGGTATGCA
97603653 TATG TATG TATG TATG TATG TATG TATG T
1 TATG TATG TATG TATG TATG TATG TATG T
97603682 TTTTTAATGT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.24, C:0.00, G:0.24, T:0.52
Consensus pattern (4 bp):
TATG
Found at i:97605847 original size:2 final size:2
Alignment explanation
Indices: 97605840--97605873 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
97605830 AACTAGCTTT
97605840 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
97605874 ATTGCAAAGT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:97607422 original size:7 final size:7
Alignment explanation
Indices: 97607412--97607438 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
97607402 CCTTTTTCCC
97607412 TTTTTAT
1 TTTTTAT
97607419 TTTTTAT
1 TTTTTAT
97607426 TTTTTAT
1 TTTTTAT
97607433 TTTTTA
1 TTTTTA
97607439 CATTTTGCCC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (7 bp):
TTTTTAT
Found at i:97614859 original size:30 final size:28
Alignment explanation
Indices: 97614786--97614865 Score: 74
Period size: 29 Copynumber: 2.8 Consensus size: 28
97614776 ACAATTGAAC
*
97614786 ATAAATTTCGAAAT-CTAAAAAATATAAA
1 ATAAATTTC-AAATAATAAAAAATATAAA
*
97614814 ACTAAAATTT-TAATAATAAAAAATATATAGA
1 A-T-AAATTTCAAATAATAAAAAATATA-A-A
*
97614845 ATAAATTTCAAATAATGAAAA
1 ATAAATTTCAAATAATAAAAA
97614866 TCACGTAGAC
Statistics
Matches: 42, Mismatches: 4, Indels: 10
0.75 0.07 0.18
Matches are distributed among these distances:
28 4 0.10
29 18 0.43
30 18 0.43
31 2 0.05
ACGTcount: A:0.61, C:0.05, G:0.04, T:0.30
Consensus pattern (28 bp):
ATAAATTTCAAATAATAAAAAATATAAA
Found at i:97629134 original size:38 final size:37
Alignment explanation
Indices: 97629092--97629188 Score: 108
Period size: 37 Copynumber: 2.6 Consensus size: 37
97629082 ACTACACTAA
97629092 CCATCAGATCAACTT-AAATCTA-AAGTATGTTTTTCTAC
1 CCATC-GATCAA-TTCAAATCTACAA-TATGTTTTTCTAC
* * *
97629130 CCATCGATGAATTCTAATCTACTATATGTTTTTCTAC
1 CCATCGATCAATTCAAATCTACAATATGTTTTTCTAC
* *
97629167 CCATCGATGAATTCTAATCTAC
1 CCATCGATCAATTCAAATCTAC
97629189 TATACCAAAC
Statistics
Matches: 54, Mismatches: 3, Indels: 5
0.87 0.05 0.08
Matches are distributed among these distances:
36 2 0.04
37 46 0.85
38 6 0.11
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (37 bp):
CCATCGATCAATTCAAATCTACAATATGTTTTTCTAC
Found at i:97629149 original size:37 final size:37
Alignment explanation
Indices: 97629108--97629188 Score: 137
Period size: 37 Copynumber: 2.2 Consensus size: 37
97629098 GATCAACTTA
97629108 AATCTA-AAGTATGTTTTTCTACCCATCGATGAATTCT
1 AATCTACAA-TATGTTTTTCTACCCATCGATGAATTCT
*
97629145 AATCTACTATATGTTTTTCTACCCATCGATGAATTCT
1 AATCTACAATATGTTTTTCTACCCATCGATGAATTCT
97629182 AATCTAC
1 AATCTAC
97629189 TATACCAAAC
Statistics
Matches: 42, Mismatches: 1, Indels: 2
0.93 0.02 0.04
Matches are distributed among these distances:
37 41 0.98
38 1 0.02
ACGTcount: A:0.30, C:0.21, G:0.09, T:0.41
Consensus pattern (37 bp):
AATCTACAATATGTTTTTCTACCCATCGATGAATTCT
Found at i:97629189 original size:37 final size:37
Alignment explanation
Indices: 97629117--97629192 Score: 152
Period size: 37 Copynumber: 2.1 Consensus size: 37
97629107 AAATCTAAAG
97629117 TATGTTTTTCTACCCATCGATGAATTCTAATCTACTA
1 TATGTTTTTCTACCCATCGATGAATTCTAATCTACTA
97629154 TATGTTTTTCTACCCATCGATGAATTCTAATCTACTA
1 TATGTTTTTCTACCCATCGATGAATTCTAATCTACTA
97629191 TA
1 TA
97629193 CCAAACGTTA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 39 1.00
ACGTcount: A:0.28, C:0.21, G:0.08, T:0.43
Consensus pattern (37 bp):
TATGTTTTTCTACCCATCGATGAATTCTAATCTACTA
Found at i:97637014 original size:20 final size:20
Alignment explanation
Indices: 97636991--97637040 Score: 82
Period size: 20 Copynumber: 2.5 Consensus size: 20
97636981 AAATCCAAAT
97636991 TAAAATACTAAAATTCAGGA
1 TAAAATACTAAAATTCAGGA
*
97637011 TAAAATCCTAAAATTCAGGA
1 TAAAATACTAAAATTCAGGA
97637031 TAAGAATACT
1 TAA-AATACT
97637041 GATATGACAT
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
20 22 0.81
21 5 0.19
ACGTcount: A:0.52, C:0.12, G:0.10, T:0.26
Consensus pattern (20 bp):
TAAAATACTAAAATTCAGGA
Found at i:97638013 original size:2 final size:2
Alignment explanation
Indices: 97638008--97638059 Score: 59
Period size: 2 Copynumber: 25.5 Consensus size: 2
97637998 TAGGTTTCAT
* * * *
97638008 TA TA TA TGA TA TA TA CA CA TA CA TA CA TA TA TA TA TA TA TA TA
1 TA TA TA T-A TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
97638051 TA TA TA TA T
1 TA TA TA TA T
97638060 GCGGTTAGAG
Statistics
Matches: 43, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
2 41 0.95
3 2 0.05
ACGTcount: A:0.48, C:0.08, G:0.02, T:0.42
Consensus pattern (2 bp):
TA
Found at i:97640719 original size:3 final size:3
Alignment explanation
Indices: 97640713--97640784 Score: 137
Period size: 3 Copynumber: 24.3 Consensus size: 3
97640703 TTACTACTGC
97640713 TAA TAA TAA TAA TAA TAA TAA TAA T-A TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
97640760 TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA T
97640785 GATGATGATA
Statistics
Matches: 68, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
2 2 0.03
3 66 0.97
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:97641323 original size:20 final size:20
Alignment explanation
Indices: 97641281--97641327 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 20
97641271 AAGAAAAGGA
*
97641281 GGGAGAGAAAAGAGGGAACG
1 GGGAAAGAAAAGAGGGAACG
* * *
97641301 GGGAAAGAAGAGAGGGGAGG
1 GGGAAAGAAAAGAGGGAACG
97641321 GGGAAAG
1 GGGAAAG
97641328 CTCCGGTCAT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.43, C:0.02, G:0.55, T:0.00
Consensus pattern (20 bp):
GGGAAAGAAAAGAGGGAACG
Found at i:97641445 original size:19 final size:18
Alignment explanation
Indices: 97641421--97641466 Score: 56
Period size: 19 Copynumber: 2.5 Consensus size: 18
97641411 GGTAAAAATC
*
97641421 TTATTTTTTTATTCTTTTT
1 TTATTTTTTTATT-TTATT
*
97641440 TTATTTTGTTATTTTATT
1 TTATTTTTTTATTTTATT
*
97641458 GTATTTTTT
1 TTATTTTTT
97641467 GATAAATATA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
18 11 0.48
19 12 0.52
ACGTcount: A:0.13, C:0.02, G:0.04, T:0.80
Consensus pattern (18 bp):
TTATTTTTTTATTTTATT
Found at i:97642587 original size:13 final size:13
Alignment explanation
Indices: 97642569--97642593 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
97642559 TTTGAAACAT
97642569 AGAAATTAAAAGC
1 AGAAATTAAAAGC
97642582 AGAAATTAAAAG
1 AGAAATTAAAAG
97642594 GCTCAACTCA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.04, G:0.16, T:0.16
Consensus pattern (13 bp):
AGAAATTAAAAGC
Found at i:97642666 original size:68 final size:67
Alignment explanation
Indices: 97642584--97642841 Score: 383
Period size: 68 Copynumber: 3.8 Consensus size: 67
97642574 TTAAAAGCAG
* *
97642584 AAATTAAAAGGCTCAACTCACCTCTCGCAACATGAGTTAATAATTTGAAAAGTAGATTTTGAGGA
1 AAATT-AAAGGCTCAACTCACCTCTCGCAATATGAGTTGAT-ATTTGAAAAGTAGATTTTGAGGA
97642649 ACGA
64 ACGA
* *
97642653 AAATTAAAGGCTCAACTCACCTCTCGCAATATGAGTTGATCTTTTGAAAAGTTGATTTTGAGGAA
1 AAATTAAAGGCTCAACTCACCTCTCGCAATATGAGTTGAT-ATTTGAAAAGTAGATTTTGAGGAA
97642718 CGA
65 CGA
* **
97642721 AAATTAAAGGCTCAACTCACCTCTCGCAATATGAGTTGATCTTTGAAAAGTAGATTTTGAAAAAC
1 AAATTAAAGGCTCAACTCACCTCTCGCAATATGAGTTGATATTTGAAAAGTAGATTTTGAGGAAC
97642786 GA
66 GA
* * *
97642788 AAATTAAAGGCTCAACTCACCTTTCGCAATATGAATTGACTTTTTGAAAA-TAGA
1 AAATTAAAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TATTTGAAAAGTAGA
97642842 ATTGAAAATA
Statistics
Matches: 176, Mismatches: 12, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
67 64 0.36
68 107 0.61
69 5 0.03
ACGTcount: A:0.38, C:0.16, G:0.17, T:0.29
Consensus pattern (67 bp):
AAATTAAAGGCTCAACTCACCTCTCGCAATATGAGTTGATATTTGAAAAGTAGATTTTGAGGAAC
GA
Found at i:97642774 original size:135 final size:137
Alignment explanation
Indices: 97642584--97642837 Score: 415
Period size: 135 Copynumber: 1.9 Consensus size: 137
97642574 TTAAAAGCAG
**
97642584 AAATTAAAAGGCTCAACTCACCTCTCGCAACATGAGTTAATAATTTGAAAAGTAGATTTTGAGGA
1 AAATTAAAAGGCTCAACTCACCTCTCGCAACATGAGTTAATAATTTGAAAAGTAGATTTTGAAAA
*
97642649 ACGAAAATTAAAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TCTTTTGAAAAGTTGATTTTG
66 ACGAAAATTAAAGGCTCAACTCACCTCTCGCAATATGAATTGACT-TTTTGAAAAGTTGATTTTG
97642713 AGGAACGA
130 AGGAACGA
* * *
97642721 AAATT-AAAGGCTCAACTCACCTCTCGCAATATGAGTTGAT-CTTTGAAAAGTAGATTTTGAAAA
1 AAATTAAAAGGCTCAACTCACCTCTCGCAACATGAGTTAATAATTTGAAAAGTAGATTTTGAAAA
*
97642784 ACGAAAATTAAAGGCTCAACTCACCTTTCGCAATATGAATTGACTTTTTGAAAA
66 ACGAAAATTAAAGGCTCAACTCACCTCTCGCAATATGAATTGACTTTTTGAAAA
97642838 TAGAATTGAA
Statistics
Matches: 109, Mismatches: 7, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
135 70 0.64
136 34 0.31
137 5 0.05
ACGTcount: A:0.38, C:0.17, G:0.17, T:0.29
Consensus pattern (137 bp):
AAATTAAAAGGCTCAACTCACCTCTCGCAACATGAGTTAATAATTTGAAAAGTAGATTTTGAAAA
ACGAAAATTAAAGGCTCAACTCACCTCTCGCAATATGAATTGACTTTTTGAAAAGTTGATTTTGA
GGAACGA
Found at i:97642803 original size:67 final size:67
Alignment explanation
Indices: 97642540--97642849 Score: 378
Period size: 68 Copynumber: 4.6 Consensus size: 67
97642530 CAACATATTC
* * ** *
97642540 CTCGCAATATGGGTTGATTTTTGAAACA-TAGAAATT-AAAAGC-AGAAATTAAAAGGCTCAACT
1 CTCGCAATATGAGTTGATCTTTGAAA-AGTAGATTTTGAAAAACGA-AAATT-AAAGGCTCAACT
97642602 CACCT
63 CACCT
* * * **
97642607 CTCGCAACATGAGTTAATAATTTGAAAAGTAGATTTTGAGGAACGAAAATTAAAGGCTCAACTCA
1 CTCGCAATATGAGTTGAT-CTTTGAAAAGTAGATTTTGAAAAACGAAAATTAAAGGCTCAACTCA
97642672 CCT
65 CCT
* **
97642675 CTCGCAATATGAGTTGATCTTTTGAAAAGTTGATTTTGAGGAACGAAAATTAAAGGCTCAACTCA
1 CTCGCAATATGAGTTGATC-TTTGAAAAGTAGATTTTGAAAAACGAAAATTAAAGGCTCAACTCA
97642740 CCT
65 CCT
97642743 CTCGCAATATGAGTTGATCTTTGAAAAGTAGATTTTGAAAAACGAAAATTAAAGGCTCAACTCAC
1 CTCGCAATATGAGTTGATCTTTGAAAAGTAGATTTTGAAAAACGAAAATTAAAGGCTCAACTCAC
97642808 CT
66 CT
* * * *
97642810 TTCGCAATATGAATTGACTTTTTGAAAA-TAGA-ATTGAAAA
1 CTCGCAATATGAGTTGA-TCTTTGAAAAGTAGATTTTGAAAA
97642850 TACCTTAGCG
Statistics
Matches: 217, Mismatches: 20, Indels: 13
0.87 0.08 0.05
Matches are distributed among these distances:
66 7 0.03
67 80 0.37
68 121 0.56
69 8 0.04
70 1 0.00
ACGTcount: A:0.39, C:0.15, G:0.17, T:0.29
Consensus pattern (67 bp):
CTCGCAATATGAGTTGATCTTTGAAAAGTAGATTTTGAAAAACGAAAATTAAAGGCTCAACTCAC
CT
Found at i:97642931 original size:71 final size:70
Alignment explanation
Indices: 97642795--97643045 Score: 337
Period size: 71 Copynumber: 3.5 Consensus size: 70
97642785 CGAAAATTAA
* * * *
97642795 AGGCTCAACTCACCTTTCGCAATATGAATTGACTTTTTGAAAATAGAATTGAAAATACCTTAGCG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAAATAGAATTGAAATTACCTCAGCG
97642860 TG-CCG
65 TGCCCG
* *
97642865 AGGCTCAACTCA-CTCTCGCAATATGAGTTGATTTTAGATTTAATAGGAATTGAAATTACCTCAG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGA--AAATA-GAATTGAAATTACCTCAG
97642929 CGTGCCCG
63 CGTGCCCG
* *
97642937 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGAAACATA-AATTGAAATTACCTCAACG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAA-ATAGAATTGAAATTACCTCAGCG
**
97643001 TGTCTTG
65 TG-CCCG
97643008 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG
97643046 GAAACATGAA
Statistics
Matches: 161, Mismatches: 13, Indels: 13
0.86 0.07 0.07
Matches are distributed among these distances:
68 6 0.04
69 17 0.11
70 36 0.22
71 60 0.37
72 18 0.11
73 24 0.15
ACGTcount: A:0.30, C:0.21, G:0.18, T:0.32
Consensus pattern (70 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAATAGAATTGAAATTACCTCAGCGT
GCCCG
Found at i:97643126 original size:86 final size:85
Alignment explanation
Indices: 97642981--97643142 Score: 261
Period size: 86 Copynumber: 1.9 Consensus size: 85
97642971 TTTGAAACAT
* * *
97642981 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG
1 AAATTGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT-
*
97643046 GAAACATGAATTAAAAAGCAG
65 GAAACATAAATTAAAAAGCAG
* *
97643067 AAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTG
1 AAATTGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG
97643132 AAACATAAATT
66 AAACATAAATT
97643143 GAAATTACCT
Statistics
Matches: 70, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
85 11 0.16
86 59 0.84
ACGTcount: A:0.34, C:0.20, G:0.17, T:0.30
Consensus pattern (85 bp):
AAATTGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG
AAACATAAATTAAAAAGCAG
Found at i:97643183 original size:71 final size:71
Alignment explanation
Indices: 97643067--97643200 Score: 214
Period size: 71 Copynumber: 1.9 Consensus size: 71
97643057 TAAAAAGCAG
* * *
97643067 AAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTG
1 AAATTGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTG
97643132 AAACAT
66 AAACAT
* * *
97643138 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTT
1 AAATTGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTT
97643201 CTTGGAAAAC
Statistics
Matches: 57, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
71 57 1.00
ACGTcount: A:0.30, C:0.23, G:0.16, T:0.31
Consensus pattern (71 bp):
AAATTGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTG
AAACAT
Found at i:97643198 original size:157 final size:160
Alignment explanation
Indices: 97642912--97643291 Score: 705
Period size: 157 Copynumber: 2.4 Consensus size: 160
97642902 ATTTAATAGG
*
97642912 AATTGAAATTACCTCAGCGTGCCC-GAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGA
1 AATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGA
*
97642976 AACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-
66 AACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGAT
97643040 TTT-TTGG-AAACATGAATTAAAAAGCAGA
131 TTTCTTGGAAAACATGAATTAAAAAGCAGA
97643068 AATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGA
1 AATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGA
97643133 AACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGAT
66 AACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGAT
*
97643198 TTTCTTGGAAAACATGAATTAAAAAGTAGA
131 TTTCTTGGAAAACATGAATTAAAAAGCAGA
97643228 AATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTG
1 AATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTG
97643292 GAAAAAACAA
Statistics
Matches: 217, Mismatches: 3, Indels: 4
0.97 0.01 0.02
Matches are distributed among these distances:
156 23 0.11
157 103 0.47
158 3 0.01
159 4 0.02
160 84 0.39
ACGTcount: A:0.32, C:0.21, G:0.17, T:0.30
Consensus pattern (160 bp):
AATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGA
AACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGAT
TTTCTTGGAAAACATGAATTAAAAAGCAGA
Found at i:97656065 original size:3 final size:3
Alignment explanation
Indices: 97656059--97656107 Score: 98
Period size: 3 Copynumber: 16.3 Consensus size: 3
97656049 TTACTACTGC
97656059 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
97656107 T
1 T
97656108 GATGATGATA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 46 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:97656649 original size:19 final size:20
Alignment explanation
Indices: 97656606--97656651 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 20
97656596 AAGAAAAGGA
*
97656606 GGGAGAGAAAAGAGGGAACG
1 GGGAAAGAAAAGAGGGAACG
* *
97656626 GGGAAAGAAGAGAGGGGA-G
1 GGGAAAGAAAAGAGGGAACG
97656645 GGGAAAG
1 GGGAAAG
97656652 CTCCGGTCAT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
19 8 0.35
20 15 0.65
ACGTcount: A:0.43, C:0.02, G:0.54, T:0.00
Consensus pattern (20 bp):
GGGAAAGAAAAGAGGGAACG
Found at i:97656769 original size:19 final size:18
Alignment explanation
Indices: 97656745--97656790 Score: 56
Period size: 19 Copynumber: 2.5 Consensus size: 18
97656735 GGTAAAAATC
*
97656745 TTATTTTTTTATTCTTTTT
1 TTATTTTTTTATT-TTATT
*
97656764 TTATTTTGTTATTTTATT
1 TTATTTTTTTATTTTATT
*
97656782 GTATTTTTT
1 TTATTTTTT
97656791 GATAAATATA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
18 11 0.48
19 12 0.52
ACGTcount: A:0.13, C:0.02, G:0.04, T:0.80
Consensus pattern (18 bp):
TTATTTTTTTATTTTATT
Found at i:97661793 original size:12 final size:12
Alignment explanation
Indices: 97661776--97661801 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
97661766 AAAATATTAA
97661776 TTGTATAAAAAG
1 TTGTATAAAAAG
97661788 TTGTATAAAAAG
1 TTGTATAAAAAG
97661800 TT
1 TT
97661802 ACTAAATTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.46, C:0.00, G:0.15, T:0.38
Consensus pattern (12 bp):
TTGTATAAAAAG
Found at i:97662291 original size:24 final size:21
Alignment explanation
Indices: 97662261--97662302 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 21
97662251 GTACATACTT
97662261 TTTTTTTTACATCATTTTAGTCC
1 TTTTTTTT--ATCATTTTAGTCC
97662284 TTTTTTTTATCATTTTAGT
1 TTTTTTTTATCATTTTAGT
97662303 TTTGAATCAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 11 0.58
23 8 0.42
ACGTcount: A:0.17, C:0.12, G:0.05, T:0.67
Consensus pattern (21 bp):
TTTTTTTTATCATTTTAGTCC
Found at i:97663054 original size:20 final size:19
Alignment explanation
Indices: 97663006--97663054 Score: 80
Period size: 19 Copynumber: 2.5 Consensus size: 19
97662996 AGATTCTTGT
*
97663006 ATAATTTTTGTTAAGAAAA
1 ATAAATTTTGTTAAGAAAA
97663025 ATAAATTTTGTTAAGAAAA
1 ATAAATTTTGTTAAGAAAA
97663044 ATAACATTTTG
1 ATAA-ATTTTG
97663055 GGCCCAACAG
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
19 22 0.79
20 6 0.21
ACGTcount: A:0.47, C:0.02, G:0.10, T:0.41
Consensus pattern (19 bp):
ATAAATTTTGTTAAGAAAA
Found at i:97666557 original size:18 final size:19
Alignment explanation
Indices: 97666530--97666567 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
97666520 GTTATGAGGG
*
97666530 TTTTGTGTTG-GTTTTGTT
1 TTTTGGGTTGAGTTTTGTT
97666548 TTTTGGGTTGAGTTTTGTT
1 TTTTGGGTTGAGTTTTGTT
97666567 T
1 T
97666568 AACTGATGAG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 9 0.50
19 9 0.50
ACGTcount: A:0.03, C:0.00, G:0.29, T:0.68
Consensus pattern (19 bp):
TTTTGGGTTGAGTTTTGTT
Found at i:97671701 original size:14 final size:14
Alignment explanation
Indices: 97671684--97671725 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
97671674 CACATAATTG
97671684 AGAACAATAAACTA
1 AGAACAATAAACTA
* *
97671698 AGAAC-AT-AATTG
1 AGAACAATAAACTA
97671710 AGAACAATAAACTA
1 AGAACAATAAACTA
97671724 AG
1 AG
97671726 TATTTGTTGC
Statistics
Matches: 22, Mismatches: 4, Indels: 4
0.73 0.13 0.13
Matches are distributed among these distances:
12 8 0.36
13 4 0.18
14 10 0.45
ACGTcount: A:0.60, C:0.12, G:0.12, T:0.17
Consensus pattern (14 bp):
AGAACAATAAACTA
Found at i:97671706 original size:26 final size:26
Alignment explanation
Indices: 97671675--97671725 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
97671665 AATTAAGCAC
97671675 ACATAATTGAGAACAATAAACTAAGA
1 ACATAATTGAGAACAATAAACTAAGA
97671701 ACATAATTGAGAACAATAAACTAAG
1 ACATAATTGAGAACAATAAACTAAG
97671726 TATTTGTTGC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.57, C:0.12, G:0.12, T:0.20
Consensus pattern (26 bp):
ACATAATTGAGAACAATAAACTAAGA
Found at i:97671898 original size:27 final size:28
Alignment explanation
Indices: 97671851--97671906 Score: 96
Period size: 27 Copynumber: 2.0 Consensus size: 28
97671841 AAAAAAGTTA
*
97671851 AGTTGGAGAAAAAAAGTGATGAATTTAG
1 AGTTAGAGAAAAAAAGTGATGAATTTAG
97671879 AGTTAGAG-AAAAAAGTGATGAATTTAG
1 AGTTAGAGAAAAAAAGTGATGAATTTAG
97671906 A
1 A
97671907 AAAGAATTAG
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
27 20 0.74
28 7 0.26
ACGTcount: A:0.48, C:0.00, G:0.27, T:0.25
Consensus pattern (28 bp):
AGTTAGAGAAAAAAAGTGATGAATTTAG
Found at i:97673725 original size:2 final size:2
Alignment explanation
Indices: 97673718--97673753 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
97673708 GAGCATTCTA
97673718 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
97673754 GAAAAAATAA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:97675857 original size:24 final size:24
Alignment explanation
Indices: 97675818--97675879 Score: 79
Period size: 24 Copynumber: 2.5 Consensus size: 24
97675808 ACATGAAATA
*
97675818 ATAAAAGAAATATGTAACAAATAAC
1 ATAAAAG-TATATGTAACAAATAAC
**
97675843 ATAAAAGTATATGTATGAAATAAC
1 ATAAAAGTATATGTAACAAATAAC
*
97675867 ATAAAAATATATG
1 ATAAAAGTATATG
97675880 AATAGCACAA
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
24 26 0.79
25 7 0.21
ACGTcount: A:0.60, C:0.05, G:0.10, T:0.26
Consensus pattern (24 bp):
ATAAAAGTATATGTAACAAATAAC
Found at i:97676286 original size:9 final size:9
Alignment explanation
Indices: 97676268--97676306 Score: 51
Period size: 9 Copynumber: 4.3 Consensus size: 9
97676258 TATTATACAT
*
97676268 TAATACATA
1 TAATAAATA
97676277 TAATAAATA
1 TAATAAATA
* *
97676286 TATTTAATA
1 TAATAAATA
97676295 TAATAAATA
1 TAATAAATA
97676304 TAA
1 TAA
97676307 ATATTAAAAT
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
9 25 1.00
ACGTcount: A:0.59, C:0.03, G:0.00, T:0.38
Consensus pattern (9 bp):
TAATAAATA
Found at i:97676936 original size:15 final size:15
Alignment explanation
Indices: 97676916--97676945 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
97676906 ATATACTTTT
97676916 TTCTTATTTTTTGTA
1 TTCTTATTTTTTGTA
97676931 TTCTTATTTTTTGTA
1 TTCTTATTTTTTGTA
97676946 CTATATTTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.07, G:0.07, T:0.73
Consensus pattern (15 bp):
TTCTTATTTTTTGTA
Found at i:97676952 original size:14 final size:14
Alignment explanation
Indices: 97676917--97676954 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 14
97676907 TATACTTTTT
97676917 TCTTATTTTTTGTA
1 TCTTATTTTTTGTA
97676931 TTCTTATTTTTTGTA
1 -TCTTATTTTTTGTA
97676946 -CTATATTTT
1 TCT-TATTTT
97676955 ATGTTTATAT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 2 0.09
14 6 0.27
15 14 0.64
ACGTcount: A:0.16, C:0.08, G:0.05, T:0.71
Consensus pattern (14 bp):
TCTTATTTTTTGTA
Found at i:97678963 original size:18 final size:21
Alignment explanation
Indices: 97678937--97678975 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
97678927 TTTAAATTTC
97678937 TTTTATATTA-T-ATTTGAAA
1 TTTTATATTATTCATTTGAAA
97678956 TTTT-TATTATTCATTTGAAA
1 TTTTATATTATTCATTTGAAA
97678976 GTATTTTCTT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 5 0.28
19 5 0.28
20 8 0.44
ACGTcount: A:0.33, C:0.03, G:0.05, T:0.59
Consensus pattern (21 bp):
TTTTATATTATTCATTTGAAA
Found at i:97678965 original size:23 final size:23
Alignment explanation
Indices: 97678911--97678965 Score: 76
Period size: 23 Copynumber: 2.4 Consensus size: 23
97678901 ATATATATCA
* *
97678911 TTTTATTATATTTTATTTTAAAT
1 TTTTATTATATTATATTTGAAAT
97678934 TTCTT-TTATATTATATTTGAAAT
1 TT-TTATTATATTATATTTGAAAT
97678957 TTTTATTAT
1 TTTTATTAT
97678966 TCATTTGAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
22 2 0.07
23 24 0.86
24 2 0.07
ACGTcount: A:0.29, C:0.02, G:0.02, T:0.67
Consensus pattern (23 bp):
TTTTATTATATTATATTTGAAAT
Found at i:97683275 original size:14 final size:14
Alignment explanation
Indices: 97683253--97683283 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
97683243 GTTTCTGAAA
97683253 ATAAACTATAATTT
1 ATAAACTATAATTT
*
97683267 ATAATCTATAATTT
1 ATAAACTATAATTT
97683281 ATA
1 ATA
97683284 TAACATTACT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.48, C:0.06, G:0.00, T:0.45
Consensus pattern (14 bp):
ATAAACTATAATTT
Found at i:97684032 original size:30 final size:29
Alignment explanation
Indices: 97684005--97684099 Score: 109
Period size: 30 Copynumber: 3.2 Consensus size: 29
97683995 TAAAAATTGT
97684005 ATTTTGACCCCTAAACTTTTCCTAAATTTC
1 ATTTTGACCCCTAAAC-TTTCCTAAATTTC
* * *
97684035 ATTTTTACCCTTAAACTTTCTTTAAATTTC
1 ATTTTGACCCCTAAACTTTC-CTAAATTTC
* * *
97684065 ACTTAGACCCCTAAACTTTCCTTAAATTAC
1 ATTTTGACCCCTAAACTTTCC-TAAATTTC
97684095 ATTTT
1 ATTTT
97684100 AACCTTAAAT
Statistics
Matches: 52, Mismatches: 11, Indels: 4
0.78 0.16 0.06
Matches are distributed among these distances:
29 4 0.08
30 48 0.92
ACGTcount: A:0.28, C:0.24, G:0.02, T:0.45
Consensus pattern (29 bp):
ATTTTGACCCCTAAACTTTCCTAAATTTC
Found at i:97684356 original size:16 final size:17
Alignment explanation
Indices: 97684337--97684380 Score: 56
Period size: 15 Copynumber: 2.7 Consensus size: 17
97684327 GTGAAAAAAG
97684337 AGCAAAAAAAAAATT-C
1 AGCAAAAAAAAAATTCC
**
97684353 AGC-AAAAAAATTTTCC
1 AGCAAAAAAAAAATTCC
97684369 AGCAAAAAAAAA
1 AGCAAAAAAAAA
97684381 CAACAAAAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
15 9 0.39
16 7 0.30
17 7 0.30
ACGTcount: A:0.66, C:0.14, G:0.07, T:0.14
Consensus pattern (17 bp):
AGCAAAAAAAAAATTCC
Found at i:97685194 original size:17 final size:17
Alignment explanation
Indices: 97685136--97685196 Score: 60
Period size: 17 Copynumber: 3.8 Consensus size: 17
97685126 TCCGAATTTA
97685136 ATATATATATTTT-TA-
1 ATATATATATTTTGTAC
*
97685151 A-A-ACTATATTATGTAC
1 ATATA-TATATTTTGTAC
97685167 ATATATATATTTTGTAC
1 ATATATATATTTTGTAC
97685184 ATATCAT-TATTTT
1 ATAT-ATATATTTT
97685197 ATATTATTGT
Statistics
Matches: 38, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
13 1 0.03
14 8 0.21
15 3 0.08
16 1 0.03
17 22 0.58
18 3 0.08
ACGTcount: A:0.38, C:0.07, G:0.03, T:0.52
Consensus pattern (17 bp):
ATATATATATTTTGTAC
Found at i:97688150 original size:258 final size:257
Alignment explanation
Indices: 97687686--97688195 Score: 975
Period size: 258 Copynumber: 2.0 Consensus size: 257
97687676 GCCACTTCTA
97687686 GAAAGTAGAGCGCACACCGTTCCATATGTTTTCTAAAACATTCTCCCCGTTAGAAGCTTATCTTA
1 GAAAGTAGAGCGCACACCGTTCCATATGTTTTCTAAAACATTCTCCCCGTTAGAAGCTTATCTTA
*
97687751 AGAAAGAATGGCCGAAGGAGGTCACTGAACAACACTGGTCTCAGTCTTTCAGAATCTTTACGCCG
66 AGAAAGAATGGCCGAAGGAGGTCACTGAACAACACTGGTCTCAGTCTTTCAGAATCTTTACACCG
97687816 ATGATGTAACTTGGAGAGCCCCGTGGATACGCCCGTCAATTCTGCTATACAAGGTCGGAGATCAA
131 ATGATGTAACTTGGAGAGCCCCGTGGATACGCCCGTCAATTCTGCTATACAAGGTCGGAGATCAA
97687881 GATTGGGTGCCACTACTCGGGTTATAGGGAGAAGTTGGATATGCTCCGTTAATAGTCCAATG
196 GATTGGGTGCCACTACTCGGGTTATAGGGAGAAGTTGGATATGCTCCGTTAATAGTCCAATG
97687943 GAAAGTAGAGCGCACACCGTTCCATATGTTTTCTAAAACATTCTCCCCGTTAGAAGCTTATCTTA
1 GAAAGTAGAGCGCACACCGTTCCATATGTTTTCTAAAACATTCTCCCCGTTAGAAGCTTATCTTA
*
97688008 AGAAAGAATGGCCGAAGGAGGTCACTGAACAACACTGGGTCTCAGTCTTTCAGAATCTTTGCACC
66 AGAAAGAATGGCCGAAGGAGGTCACTGAACAACACT-GGTCTCAGTCTTTCAGAATCTTTACACC
97688073 GATGATGTAACTTGGAGAGCCCCGTGGATACGCCCGTCAATTCTGCTATACAAGGTCGGAGATCA
130 GATGATGTAACTTGGAGAGCCCCGTGGATACGCCCGTCAATTCTGCTATACAAGGTCGGAGATCA
* *
97688138 AGATTGGGTGCCACTACTCGGGTTATGGGGAGGAGTTGGATATGCTCCGTTAATAGTC
195 AGATTGGGTGCCACTACTCGGGTTATAGGGAGAAGTTGGATATGCTCCGTTAATAGTC
97688196 TAAAGGTAAT
Statistics
Matches: 248, Mismatches: 4, Indels: 1
0.98 0.02 0.00
Matches are distributed among these distances:
257 101 0.41
258 147 0.59
ACGTcount: A:0.27, C:0.22, G:0.25, T:0.26
Consensus pattern (257 bp):
GAAAGTAGAGCGCACACCGTTCCATATGTTTTCTAAAACATTCTCCCCGTTAGAAGCTTATCTTA
AGAAAGAATGGCCGAAGGAGGTCACTGAACAACACTGGTCTCAGTCTTTCAGAATCTTTACACCG
ATGATGTAACTTGGAGAGCCCCGTGGATACGCCCGTCAATTCTGCTATACAAGGTCGGAGATCAA
GATTGGGTGCCACTACTCGGGTTATAGGGAGAAGTTGGATATGCTCCGTTAATAGTCCAATG
Found at i:97690143 original size:57 final size:57
Alignment explanation
Indices: 97690074--97690188 Score: 230
Period size: 57 Copynumber: 2.0 Consensus size: 57
97690064 ATGGGAGAAG
97690074 ATGTCCAAAAGCGTATCTTGTAATGTTTTACCGAAAAATGACGGGTTACGTGAACGA
1 ATGTCCAAAAGCGTATCTTGTAATGTTTTACCGAAAAATGACGGGTTACGTGAACGA
97690131 ATGTCCAAAAGCGTATCTTGTAATGTTTTACCGAAAAATGACGGGTTACGTGAACGA
1 ATGTCCAAAAGCGTATCTTGTAATGTTTTACCGAAAAATGACGGGTTACGTGAACGA
97690188 A
1 A
97690189 GATAAACTAC
Statistics
Matches: 58, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
57 58 1.00
ACGTcount: A:0.34, C:0.16, G:0.23, T:0.28
Consensus pattern (57 bp):
ATGTCCAAAAGCGTATCTTGTAATGTTTTACCGAAAAATGACGGGTTACGTGAACGA
Found at i:97692121 original size:246 final size:244
Alignment explanation
Indices: 97691683--97692138 Score: 567
Period size: 246 Copynumber: 1.9 Consensus size: 244
97691673 TTAACTTTAT
** * *
97691683 GACTCAAGATTGATAACAACACCATAAAAAAACAATTTTAATTTTTTTTTCATTTTAACATCGTA
1 GACTCAAGATTGATAACAACACCATAAAAAAACAATTTTAATTACTTTTTCATTCTAAAATCGTA
* * * * * *
97691748 CATATTTTGTATTATTATTAATTAGTTTCAAACTATACGTTTTATTATTTATTGCATTTTATTTT
66 CATATTTCGTATTATTATTAATTAGTTTCAAACCATAAGTTTCATTATTTATTACATGTTATTTT
* * * * * * * *
97691813 TAAACACATATTTGTGTTCTAAATTTGTGGTTTCCACACGTATATATATGTGATAGGATTTCTAG
131 TAAACACATATTTGTATTCTAAATTTGTGATTTCCACACGCATACACATATGAAAAGATTTCTAG
* *
97691878 TATTAGTTATGTATTTGATTGAATTGGTGTTACAAGTTAACTCGACACA
196 TATTAATAATGTATTTGATTGAATTGGTGTTACAAGTTAACTCGACACA
* ***
97691927 GACTCAAGATTGATGACAACACCAT-GTTAAACAA-TTTAATCTAACTTTTTCATTCTAATAAT-
1 GACTCAAGATTGATAACAACACCATAAAAAAACAATTTTAAT-T-ACTTTTTCATTCTAA-AATC
* * *
97691989 GTACATATTTCACGTGTTATTATTAATTAGTTTTAAACCATAAGTTTCATTATTTATTATATGTT
63 GTACATATTT--CGTATTATTATTAATTAGTTTCAAACCATAAGTTTCATTATTTATTACATGTT
* * * *
97692054 ATTTTTAAACACATATTTGTATTCTATATTTGTGATTTCCATACGCATACGCGTATGAAAAGATT
126 ATTTTTAAACACATATTTGTATTCTAAATTTGTGATTTCCACACGCATACACATATGAAAAGATT
97692119 TCTAGTATTAATAATGTATT
191 TCTAGTATTAATAATGTATT
97692139 AGATGATCAT
Statistics
Matches: 176, Mismatches: 31, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
242 6 0.03
243 7 0.04
244 46 0.26
245 2 0.01
246 115 0.65
ACGTcount: A:0.33, C:0.12, G:0.11, T:0.44
Consensus pattern (244 bp):
GACTCAAGATTGATAACAACACCATAAAAAAACAATTTTAATTACTTTTTCATTCTAAAATCGTA
CATATTTCGTATTATTATTAATTAGTTTCAAACCATAAGTTTCATTATTTATTACATGTTATTTT
TAAACACATATTTGTATTCTAAATTTGTGATTTCCACACGCATACACATATGAAAAGATTTCTAG
TATTAATAATGTATTTGATTGAATTGGTGTTACAAGTTAACTCGACACA
Found at i:97694656 original size:15 final size:15
Alignment explanation
Indices: 97694636--97694680 Score: 90
Period size: 15 Copynumber: 3.0 Consensus size: 15
97694626 AATTTATTCT
97694636 TTATTTGAATCAAAC
1 TTATTTGAATCAAAC
97694651 TTATTTGAATCAAAC
1 TTATTTGAATCAAAC
97694666 TTATTTGAATCAAAC
1 TTATTTGAATCAAAC
97694681 ATAATGTGAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 30 1.00
ACGTcount: A:0.40, C:0.13, G:0.07, T:0.40
Consensus pattern (15 bp):
TTATTTGAATCAAAC
Found at i:97700665 original size:31 final size:31
Alignment explanation
Indices: 97700620--97700702 Score: 130
Period size: 31 Copynumber: 2.7 Consensus size: 31
97700610 GAACTATTCA
* * *
97700620 TTGGCGATATAAAATGTAAAATGTATTATCG
1 TTGGTGATGTAAAATGTAAAATGTATGATCG
*
97700651 TTGGTGATGTAAAATGTAAAATGTGTGATCG
1 TTGGTGATGTAAAATGTAAAATGTATGATCG
97700682 TTGGTGATGTAAAATGTAAAA
1 TTGGTGATGTAAAATGTAAAA
97700703 AGGTGCAAAC
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 48 1.00
ACGTcount: A:0.37, C:0.04, G:0.24, T:0.35
Consensus pattern (31 bp):
TTGGTGATGTAAAATGTAAAATGTATGATCG
Found at i:97701009 original size:47 final size:47
Alignment explanation
Indices: 97700940--97701033 Score: 170
Period size: 47 Copynumber: 2.0 Consensus size: 47
97700930 ACAAAGAGTT
*
97700940 CACGGAGGAGCCCAAATATTGAATATATGCTTCACCTCCGCGGAGAG
1 CACGGAGGAGCCCAAATATTGAATATATGCTTCACCTCCGCAGAGAG
*
97700987 CACGGAGGAGCCCGAATATTGAATATATGCTTCACCTCCGCAGAGAG
1 CACGGAGGAGCCCAAATATTGAATATATGCTTCACCTCCGCAGAGAG
97701034 ACACAAAAGG
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 45 1.00
ACGTcount: A:0.30, C:0.26, G:0.26, T:0.19
Consensus pattern (47 bp):
CACGGAGGAGCCCAAATATTGAATATATGCTTCACCTCCGCAGAGAG
Found at i:97703058 original size:35 final size:35
Alignment explanation
Indices: 97702968--97703058 Score: 123
Period size: 34 Copynumber: 2.6 Consensus size: 35
97702958 GCTCCCGCAA
* *
97702968 ATAGAGGAAGGCTTAC-AGAGGTCTTGGTCCCAAAC
1 ATAG-GGAAGGCTTACGAGAGGTCCTGCTCCCAAAC
* *
97703003 ATGGGGAA-GCTTACGGGAGGTCCTGCTCCCAAAC
1 ATAGGGAAGGCTTACGAGAGGTCCTGCTCCCAAAC
97703037 ATAGGGAAGGCTTACGAGAGGT
1 ATAGGGAAGGCTTACGAGAGGT
97703059 ATCATATGTT
Statistics
Matches: 48, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
33 6 0.12
34 27 0.56
35 15 0.31
ACGTcount: A:0.29, C:0.20, G:0.33, T:0.19
Consensus pattern (35 bp):
ATAGGGAAGGCTTACGAGAGGTCCTGCTCCCAAAC
Found at i:97708413 original size:21 final size:21
Alignment explanation
Indices: 97708389--97708433 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
97708379 TAGCAATAAC
97708389 AAAGGGGAGTCAAATACCATG
1 AAAGGGGAGTCAAATACCATG
** **
97708410 AAAGTTGCTTCAAATACCATG
1 AAAGGGGAGTCAAATACCATG
97708431 AAA
1 AAA
97708434 CCTGCAAGGC
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.44, C:0.16, G:0.20, T:0.20
Consensus pattern (21 bp):
AAAGGGGAGTCAAATACCATG
Found at i:97719299 original size:23 final size:23
Alignment explanation
Indices: 97719254--97719299 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
97719244 TTTGTTTCCT
* * *
97719254 TTTGCCTTCTCTTTTGCTGGAAA
1 TTTGCCTTCTCGTTTGATAGAAA
*
97719277 TTTGTCTTCTCGTTTGATAGAAA
1 TTTGCCTTCTCGTTTGATAGAAA
97719300 ATGCCTCTTT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.17, C:0.17, G:0.17, T:0.48
Consensus pattern (23 bp):
TTTGCCTTCTCGTTTGATAGAAA
Found at i:97724702 original size:30 final size:30
Alignment explanation
Indices: 97724647--97724704 Score: 82
Period size: 31 Copynumber: 1.9 Consensus size: 30
97724637 TTCTAAACCA
97724647 AACCTGCCCAAATTAAAAAACAAAAAAACG
1 AACCTGCCCAAATTAAAAAACAAAAAAACG
* *
97724677 AACCTAGCCTAAATTAAGAAA-AAAAAAA
1 AACCT-GCCCAAATTAAAAAACAAAAAAA
97724705 GAAAAAGAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 12 0.48
31 13 0.52
ACGTcount: A:0.62, C:0.19, G:0.07, T:0.12
Consensus pattern (30 bp):
AACCTGCCCAAATTAAAAAACAAAAAAACG
Found at i:97728732 original size:21 final size:21
Alignment explanation
Indices: 97728706--97728749 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
97728696 ATGGCCATTT
97728706 GAGGTACCATTTTGAGTGATG
1 GAGGTACCATTTTGAGTGATG
97728727 GAGGTACCATTTTGAGTGATG
1 GAGGTACCATTTTGAGTGATG
97728748 GA
1 GA
97728750 CTCCATTGAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.25, C:0.09, G:0.34, T:0.32
Consensus pattern (21 bp):
GAGGTACCATTTTGAGTGATG
Found at i:97730418 original size:44 final size:44
Alignment explanation
Indices: 97730355--97730438 Score: 159
Period size: 44 Copynumber: 1.9 Consensus size: 44
97730345 CCCATAAATT
97730355 AAGTCGGTCCAATGTATAACACTAACAACATATATAATTGCTCC
1 AAGTCGGTCCAATGTATAACACTAACAACATATATAATTGCTCC
*
97730399 AAGTCGGTCCAATGTATAACATTAACAACATATATAATTG
1 AAGTCGGTCCAATGTATAACACTAACAACATATATAATTG
97730439 TTCAAACTCG
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
44 39 1.00
ACGTcount: A:0.40, C:0.19, G:0.12, T:0.29
Consensus pattern (44 bp):
AAGTCGGTCCAATGTATAACACTAACAACATATATAATTGCTCC
Found at i:97733243 original size:23 final size:23
Alignment explanation
Indices: 97733199--97733243 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 23
97733189 TTATATCATG
* * *
97733199 TAAATATTAAATATATTATAATA
1 TAAATATTAAAAAAATGATAATA
*
97733222 TAAATATTAAAAAAATGCTAAT
1 TAAATATTAAAAAAATGATAAT
97733244 TACTTTATTT
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.58, C:0.02, G:0.02, T:0.38
Consensus pattern (23 bp):
TAAATATTAAAAAAATGATAATA
Found at i:97739080 original size:25 final size:26
Alignment explanation
Indices: 97739051--97739156 Score: 198
Period size: 25 Copynumber: 4.2 Consensus size: 26
97739041 TGAAATTCCC
97739051 ATCATGGAACATTTACCTAA-CCATT
1 ATCATGGAACATTTACCTAACCCATT
97739076 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
97739102 ATCATGGAACATTTACCTAA-CCATT
1 ATCATGGAACATTTACCTAACCCATT
97739127 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
97739153 ATCA
1 ATCA
97739157 ATTTGTACCA
Statistics
Matches: 79, Mismatches: 0, Indels: 3
0.96 0.00 0.04
Matches are distributed among these distances:
25 45 0.57
26 34 0.43
ACGTcount: A:0.36, C:0.25, G:0.08, T:0.31
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:97739121 original size:51 final size:51
Alignment explanation
Indices: 97739051--97739156 Score: 212
Period size: 51 Copynumber: 2.1 Consensus size: 51
97739041 TGAAATTCCC
97739051 ATCATGGAACATTTACCTAACCATTATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCATTATCATGGAACATTTACCTAACCCATT
97739102 ATCATGGAACATTTACCTAACCATTATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCATTATCATGGAACATTTACCTAACCCATT
97739153 ATCA
1 ATCA
97739157 ATTTGTACCA
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
51 55 1.00
ACGTcount: A:0.36, C:0.25, G:0.08, T:0.31
Consensus pattern (51 bp):
ATCATGGAACATTTACCTAACCATTATCATGGAACATTTACCTAACCCATT
Found at i:97744645 original size:25 final size:27
Alignment explanation
Indices: 97744608--97744661 Score: 76
Period size: 26 Copynumber: 2.1 Consensus size: 27
97744598 TCAAACATGC
97744608 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGGTCAATTTAACACCTAGGGGT
* *
97744634 ATTTCGGT-AATTTTACACCTAGGGGT
1 ATTTAGGTCAATTTAACACCTAGGGGT
97744660 AT
1 AT
97744662 AACAGTAATT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.28
26 18 0.72
ACGTcount: A:0.26, C:0.15, G:0.22, T:0.37
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACACCTAGGGGT
Found at i:97744669 original size:26 final size:26
Alignment explanation
Indices: 97744617--97744700 Score: 80
Period size: 26 Copynumber: 3.2 Consensus size: 26
97744607 CATTTAGGTC
* * *
97744617 AATTTAAC-CCTAGGGGTATTTCGGT
1 AATTTTACACCTAGGGGTATTACAGT
*
97744642 AATTTTACACCTAGGGGTATAACAGT
1 AATTTTACACCTAGGGGTATTACAGT
* * *
97744668 AATTTTCCATGCATAGGGGTATTATAGT
1 AATTTTACA--CCTAGGGGTATTACAGT
97744696 AATTT
1 AATTT
97744701 AGCTGCTTTT
Statistics
Matches: 48, Mismatches: 8, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
25 7 0.15
26 22 0.46
28 19 0.40
ACGTcount: A:0.30, C:0.13, G:0.20, T:0.37
Consensus pattern (26 bp):
AATTTTACACCTAGGGGTATTACAGT
Found at i:97746176 original size:26 final size:26
Alignment explanation
Indices: 97746146--97746253 Score: 198
Period size: 26 Copynumber: 4.2 Consensus size: 26
97746136 TGAAATTCCC
97746146 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
97746172 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
97746198 ATCATGAAACATTTACCTAACTCATT
1 ATCATGGAACATTTACCTAACCCATT
97746224 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
97746250 ATCA
1 ATCA
97746254 ATTTGTACCA
Statistics
Matches: 78, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 78 1.00
ACGTcount: A:0.36, C:0.26, G:0.06, T:0.31
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:97752902 original size:19 final size:20
Alignment explanation
Indices: 97752861--97752910 Score: 75
Period size: 19 Copynumber: 2.5 Consensus size: 20
97752851 ATGGAAGTAT
*
97752861 GAATTTAAATTTTTACATTG
1 GAATTTAAATTATTACATTG
*
97752881 GAATTTAAATTATTA-TTTG
1 GAATTTAAATTATTACATTG
97752900 GAATTTAAATT
1 GAATTTAAATT
97752911 TGTTTATTAT
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
19 14 0.50
20 14 0.50
ACGTcount: A:0.38, C:0.02, G:0.10, T:0.50
Consensus pattern (20 bp):
GAATTTAAATTATTACATTG
Done.