Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr02 99090824
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 99090824
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 317 characters in sequence are not A, C, G, or T
File 316 of 318
Found at i:98126772 original size:91 final size:91
Alignment explanation
Indices: 98126664--98126843 Score: 360
Period size: 91 Copynumber: 2.0 Consensus size: 91
98126654 GCACACCACT
98126664 TCTATTTTTAATAATACAAATGAATAAAATTTTTCACAGAAAGGATCAATTTATTTTTTGATCTA
1 TCTATTTTTAATAATACAAATGAATAAAATTTTTCACAGAAAGGATCAATTTATTTTTTGATCTA
98126729 ATGTATAGAGACTAATATATTTATCG
66 ATGTATAGAGACTAATATATTTATCG
98126755 TCTATTTTTAATAATACAAATGAATAAAATTTTTCACAGAAAGGATCAATTTATTTTTTGATCTA
1 TCTATTTTTAATAATACAAATGAATAAAATTTTTCACAGAAAGGATCAATTTATTTTTTGATCTA
98126820 ATGTATAGAGACTAATATATTTAT
66 ATGTATAGAGACTAATATATTTAT
98126844 TATTTTAGAT
Statistics
Matches: 89, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
91 89 1.00
ACGTcount: A:0.40, C:0.08, G:0.09, T:0.42
Consensus pattern (91 bp):
TCTATTTTTAATAATACAAATGAATAAAATTTTTCACAGAAAGGATCAATTTATTTTTTGATCTA
ATGTATAGAGACTAATATATTTATCG
Found at i:98126927 original size:16 final size:15
Alignment explanation
Indices: 98126884--98126934 Score: 61
Period size: 16 Copynumber: 3.4 Consensus size: 15
98126874 AATCTTTGAC
98126884 AATT-TTTT-ATTTA
1 AATTATTTTAATTTA
*
98126897 ATTTAGTTTTAATTTA
1 AATTA-TTTTAATTTA
98126913 AATTATTTTAGATTTA
1 AATTATTTTA-ATTTA
98126929 AATTAT
1 AATTAT
98126935 AAATCGAAAT
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
13 3 0.09
15 9 0.28
16 20 0.62
ACGTcount: A:0.35, C:0.00, G:0.04, T:0.61
Consensus pattern (15 bp):
AATTATTTTAATTTA
Found at i:98132020 original size:55 final size:55
Alignment explanation
Indices: 98131955--98132066 Score: 215
Period size: 55 Copynumber: 2.0 Consensus size: 55
98131945 AAATGGAATC
98131955 TTGATATAATAAAGGAACGAAAATTTTAAAAAAGAAAAAGAAGAAGAAAAAAACT
1 TTGATATAATAAAGGAACGAAAATTTTAAAAAAGAAAAAGAAGAAGAAAAAAACT
*
98132010 TTGATATAATAAAGGAACGAAAATTTTTAAAAAGAAAAAGAAGAAGAAAAAAACT
1 TTGATATAATAAAGGAACGAAAATTTTAAAAAAGAAAAAGAAGAAGAAAAAAACT
98132065 TT
1 TT
98132067 CTTTTGCCTC
Statistics
Matches: 56, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
55 56 1.00
ACGTcount: A:0.62, C:0.04, G:0.14, T:0.21
Consensus pattern (55 bp):
TTGATATAATAAAGGAACGAAAATTTTAAAAAAGAAAAAGAAGAAGAAAAAAACT
Found at i:98135336 original size:23 final size:22
Alignment explanation
Indices: 98135284--98135338 Score: 58
Period size: 23 Copynumber: 2.5 Consensus size: 22
98135274 TTATTTAAAA
*
98135284 TTTGAATTA-AAATGATGAATT
1 TTTGAATTATAAATGATAAATT
* *
98135305 TTGTAAATTATAAATGCTAAATT
1 TT-TGAATTATAAATGATAAATT
98135328 TGTTGAATTAT
1 T-TTGAATTAT
98135339 TTACAGTTAA
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
21 2 0.07
22 6 0.22
23 18 0.67
24 1 0.04
ACGTcount: A:0.40, C:0.02, G:0.13, T:0.45
Consensus pattern (22 bp):
TTTGAATTATAAATGATAAATT
Found at i:98140546 original size:60 final size:60
Alignment explanation
Indices: 98140453--98140573 Score: 224
Period size: 60 Copynumber: 2.0 Consensus size: 60
98140443 AAAATGAGCA
*
98140453 AGGAGAGGAAAGATTTGTACAAGACAAGGCCAGTTTCAGAAATTTGTCGTATGATCGGAT
1 AGGAGAGGAAAGATTTGTACAAGACAAGGCCAGTTTCAGAAATTTGTCGTATGATCAGAT
*
98140513 AGGAGAGGAAAGATTTGTACAAGACAGGGCCAGTTTCAGAAATTTGTCGTATGATCAGAT
1 AGGAGAGGAAAGATTTGTACAAGACAAGGCCAGTTTCAGAAATTTGTCGTATGATCAGAT
98140573 A
1 A
98140574 AGTCTGACAT
Statistics
Matches: 59, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
60 59 1.00
ACGTcount: A:0.36, C:0.12, G:0.28, T:0.25
Consensus pattern (60 bp):
AGGAGAGGAAAGATTTGTACAAGACAAGGCCAGTTTCAGAAATTTGTCGTATGATCAGAT
Found at i:98144162 original size:19 final size:19
Alignment explanation
Indices: 98144138--98144174 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
98144128 TATTATCAAT
*
98144138 TAAAAAATTAAATTAAATA
1 TAAAAAATCAAATTAAATA
98144157 TAAAAAATCAAATTAAAT
1 TAAAAAATCAAATTAAAT
98144175 TCTATTGTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.30
Consensus pattern (19 bp):
TAAAAAATCAAATTAAATA
Found at i:98145163 original size:76 final size:76
Alignment explanation
Indices: 98145033--98145185 Score: 288
Period size: 76 Copynumber: 2.0 Consensus size: 76
98145023 CTAATTTAAA
98145033 ATCTTAATCATAATTTGAGATATATGATGCAATAAATCCTTTGTACTTGAGAACAATGCTCCCAA
1 ATCTTAATCATAATTTGAGATATATGATGCAATAAATCCTTTGTACTTGAGAACAATGCTCCCAA
98145098 AGTTGATCTTC
66 AGTTGATCTTC
* *
98145109 ATCTTAATCATAATTTGAGATATATGATGCAATTAATCCTTTGTACTTGGGAACAATGCTCCCAA
1 ATCTTAATCATAATTTGAGATATATGATGCAATAAATCCTTTGTACTTGAGAACAATGCTCCCAA
98145174 AGTTGATCTTC
66 AGTTGATCTTC
98145185 A
1 A
98145186 CATTGAATTT
Statistics
Matches: 75, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
76 75 1.00
ACGTcount: A:0.33, C:0.17, G:0.14, T:0.36
Consensus pattern (76 bp):
ATCTTAATCATAATTTGAGATATATGATGCAATAAATCCTTTGTACTTGAGAACAATGCTCCCAA
AGTTGATCTTC
Found at i:98156196 original size:59 final size:59
Alignment explanation
Indices: 98156092--98156209 Score: 191
Period size: 59 Copynumber: 2.0 Consensus size: 59
98156082 GCATGGAGCG
* * *
98156092 GCAAGAAACTCGTTGTTGATCATTTTAAGATGTTTTGATGCATTGCATATGCACATATA
1 GCAAGAAACCCGTTGTTGATCATTTTAAGATATTTGGATGCATTGCATATGCACATATA
* *
98156151 GCAAGAAACCCGTTGTTGATCATTTTAAGATATTTGGATGTATTGCATATGCACTTATA
1 GCAAGAAACCCGTTGTTGATCATTTTAAGATATTTGGATGCATTGCATATGCACATATA
98156210 TCTAATGAAA
Statistics
Matches: 54, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
59 54 1.00
ACGTcount: A:0.31, C:0.14, G:0.19, T:0.37
Consensus pattern (59 bp):
GCAAGAAACCCGTTGTTGATCATTTTAAGATATTTGGATGCATTGCATATGCACATATA
Found at i:98162018 original size:122 final size:122
Alignment explanation
Indices: 98161801--98162046 Score: 402
Period size: 122 Copynumber: 2.0 Consensus size: 122
98161791 CTCGAATATT
* *
98161801 TTTTCCTTCGAAACCCTTGGATAACTTTAAATCAATCAAACAAAAAGACAAGATAGTTTATAGCA
1 TTTTCCTTCGAAACCCTTGGATAACTTTAAATCAACCAAACAAAAAGACAAGATAGCTTATAGCA
* *
98161866 TGAAAGAAAGCTATTCTAAGCTATTCATTCTTCATATAACCCAAAATTCTAACTAGG
66 TGAAAAAAAGCTATTCTAAGCTATGCATTCTTCATATAACCCAAAATTCTAACTAGG
* * *
98161923 TTTTCCTTTGAAACCCTTGGATAATTTTAAATCAACCAAACAAAAAGACAGGATAGCTTATAGCA
1 TTTTCCTTCGAAACCCTTGGATAACTTTAAATCAACCAAACAAAAAGACAAGATAGCTTATAGCA
* * *
98161988 TGAAAAAAAGCTATTCTAAGCTATGCATTCTTCATATAACTCAAAGTTCTGACTAGG
66 TGAAAAAAAGCTATTCTAAGCTATGCATTCTTCATATAACCCAAAATTCTAACTAGG
98162045 TT
1 TT
98162047 CAAAATGATA
Statistics
Matches: 114, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
122 114 1.00
ACGTcount: A:0.39, C:0.18, G:0.12, T:0.31
Consensus pattern (122 bp):
TTTTCCTTCGAAACCCTTGGATAACTTTAAATCAACCAAACAAAAAGACAAGATAGCTTATAGCA
TGAAAAAAAGCTATTCTAAGCTATGCATTCTTCATATAACCCAAAATTCTAACTAGG
Found at i:98163794 original size:21 final size:20
Alignment explanation
Indices: 98163743--98163794 Score: 59
Period size: 20 Copynumber: 2.5 Consensus size: 20
98163733 AAATCTAAAT
* *
98163743 TAAAATACTAAAATTTAGGA
1 TAAAATACTGAAATTTAGAA
* *
98163763 TAAAATCCTGAAATTTTGAA
1 TAAAATACTGAAATTTAGAA
98163783 TAAAAATACTGA
1 T-AAAATACTGA
98163795 TGTGGCATAA
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
20 17 0.65
21 9 0.35
ACGTcount: A:0.52, C:0.08, G:0.10, T:0.31
Consensus pattern (20 bp):
TAAAATACTGAAATTTAGAA
Found at i:98176526 original size:29 final size:30
Alignment explanation
Indices: 98176454--98176526 Score: 78
Period size: 30 Copynumber: 2.5 Consensus size: 30
98176444 CTTCTAAAAC
*
98176454 TTTTAAAAATTTTAATTAGATCTCTCAGTT
1 TTTTAAAAATTTTAATTAGATCTCTCAGTA
* * *
98176484 TTTTTAGAATTTTAATTAGA-CTCTTA-TA
1 TTTTAAAAATTTTAATTAGATCTCTCAGTA
*
98176512 TTTTGAAAATCTTTA
1 TTTTAAAAAT-TTTA
98176527 TTAAACCCCT
Statistics
Matches: 36, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
28 9 0.25
29 9 0.25
30 18 0.50
ACGTcount: A:0.33, C:0.08, G:0.07, T:0.52
Consensus pattern (30 bp):
TTTTAAAAATTTTAATTAGATCTCTCAGTA
Found at i:98176546 original size:30 final size:29
Alignment explanation
Indices: 98176512--98176569 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 29
98176502 GACTCTTATA
98176512 TTTTGAAAATCTTTA-TTAAACCCCTAAAAG
1 TTTTGAAAAT-TTTAGTTAAACCCC-AAAAG
*
98176542 TTTTGAAAATTTTAGTTAATCCCCAAAA
1 TTTTGAAAATTTTAGTTAAACCCCAAAA
98176570 TTAGTGGACC
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
29 8 0.31
30 18 0.69
ACGTcount: A:0.40, C:0.16, G:0.07, T:0.38
Consensus pattern (29 bp):
TTTTGAAAATTTTAGTTAAACCCCAAAAG
Found at i:98178355 original size:42 final size:42
Alignment explanation
Indices: 98178294--98178447 Score: 245
Period size: 42 Copynumber: 3.7 Consensus size: 42
98178284 TCGTTTTCTC
** * *
98178294 GATGCCATAGTTCAACTATGGTCTTACACATCTTCACATAAT
1 GATGCCATAGCCCAGCTATGGTCTTACACATATTCACATAAT
*
98178336 GATGCCATAGCCTAGCTATGGTCTTACACATATTCACATAAT
1 GATGCCATAGCCCAGCTATGGTCTTACACATATTCACATAAT
* *
98178378 GATGCCATAGCCCAGCTATGGTCTTACACATATTCATATATT
1 GATGCCATAGCCCAGCTATGGTCTTACACATATTCACATAAT
98178420 GATGCCATAGCCCAGCTATGGTCTTACA
1 GATGCCATAGCCCAGCTATGGTCTTACA
98178448 TGAATCACAT
Statistics
Matches: 104, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
42 104 1.00
ACGTcount: A:0.29, C:0.25, G:0.15, T:0.31
Consensus pattern (42 bp):
GATGCCATAGCCCAGCTATGGTCTTACACATATTCACATAAT
Found at i:98178602 original size:31 final size:31
Alignment explanation
Indices: 98178567--98178715 Score: 237
Period size: 31 Copynumber: 4.8 Consensus size: 31
98178557 CTTGTCACTT
*
98178567 GTAGCCGAAGCTACCACTATTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* *
98178598 GTAGCCGGAGCTACCATTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
98178629 GTAGCC-AGAGCTACCACTTTTCACTGATCAG
1 GTAGCCGA-AGCTACCACTTTTCACTGATCAG
*
98178660 GTAGCCGGAGCTACCACTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
*
98178691 GTAGCAGAAGCTACCACTTTTCACT
1 GTAGCCGAAGCTACCACTTTTCACT
98178716 TGTCATTTGT
Statistics
Matches: 108, Mismatches: 8, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
31 108 1.00
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.26
Consensus pattern (31 bp):
GTAGCCGAAGCTACCACTTTTCACTGATCAG
Found at i:98178793 original size:50 final size:50
Alignment explanation
Indices: 98178691--98178917 Score: 364
Period size: 50 Copynumber: 4.5 Consensus size: 50
98178681 CACTGATCAG
* * * *
98178691 GTAGCAGAAGCTACCACTTTTCACTTGTCATTTGTCATTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTT-TCATTTGTCCTTGATCAGATAAGT
* *
98178742 GTAGCCTAAGCTATCACTTATCACTTTCATTTTTCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
*
98178792 GTAGCCGAAGCTATTACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
* *
98178842 GAAGCCGAAGCTATTACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
98178892 GTAGCCGAAGCTATCACTTATCACTT
1 GTAGCCGAAGCTATCACTTATCACTT
98178918 GTTGCCATGG
Statistics
Matches: 164, Mismatches: 12, Indels: 1
0.93 0.07 0.01
Matches are distributed among these distances:
50 142 0.87
51 22 0.13
ACGTcount: A:0.27, C:0.21, G:0.15, T:0.37
Consensus pattern (50 bp):
GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
Found at i:98181174 original size:6 final size:6
Alignment explanation
Indices: 98181156--98181195 Score: 53
Period size: 6 Copynumber: 6.7 Consensus size: 6
98181146 ACACCTTCGG
* * *
98181156 CACCGA CATCGA CACCGA CACCGA CACTGA CACCAA CACC
1 CACCGA CACCGA CACCGA CACCGA CACCGA CACCGA CACC
98181196 AAATGGGGCT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
6 29 1.00
ACGTcount: A:0.35, C:0.47, G:0.12, T:0.05
Consensus pattern (6 bp):
CACCGA
Found at i:98184632 original size:168 final size:168
Alignment explanation
Indices: 98184392--98184722 Score: 518
Period size: 168 Copynumber: 2.0 Consensus size: 168
98184382 CCCTCGCAGA
* * * * *
98184392 TTGTTTTTGGGTCATTTTCTGACATGCCAGCTGACGTATTCTATGATTCAACATTCGACGAAGCA
1 TTGTTTTTGGGTCATTTGCTGACATGCCAGCTCACGTATTCTATCATTCAACATTCAACCAAGCA
* * * * *
98184457 CCACCTTCCAAGGTGGCCCGTGTCTCACCTCGTCCACCTGCACCTTCAGCCCCGGCAGGGGCTTC
66 ACACCTTCCAAGGTGGCCCATGTCTCACCTCCTCCACCTGCACCTCCAGCACCGGCAGGGGCTTC
98184522 TGAAAATGTGGCCAAAGATGATGAGAAACCAAACAAGT
131 TGAAAATGTGGCCAAAGATGATGAGAAACCAAACAAGT
* * * *
98184560 TTGTTTTTGGGTCGTTTGGTGACATGTCAGGTCACGTATTCTATCATTCAACATTCAACCAAGCA
1 TTGTTTTTGGGTCATTTGCTGACATGCCAGCTCACGTATTCTATCATTCAACATTCAACCAAGCA
* *
98184625 ACACCTTCCAAGGTGGCCCATGTCTCACCTCCTCCACTTGCACCTCCAGCACCGGCAGGGGCTTT
66 ACACCTTCCAAGGTGGCCCATGTCTCACCTCCTCCACCTGCACCTCCAGCACCGGCAGGGGCTTC
98184690 TGAAAATGTGGCCAAAGATGATGAGAAACCAAA
131 TGAAAATGTGGCCAAAGATGATGAGAAACCAAA
98184723 AAATGCTAAA
Statistics
Matches: 147, Mismatches: 16, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
168 147 1.00
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.26
Consensus pattern (168 bp):
TTGTTTTTGGGTCATTTGCTGACATGCCAGCTCACGTATTCTATCATTCAACATTCAACCAAGCA
ACACCTTCCAAGGTGGCCCATGTCTCACCTCCTCCACCTGCACCTCCAGCACCGGCAGGGGCTTC
TGAAAATGTGGCCAAAGATGATGAGAAACCAAACAAGT
Found at i:98185458 original size:27 final size:28
Alignment explanation
Indices: 98185390--98185458 Score: 70
Period size: 28 Copynumber: 2.5 Consensus size: 28
98185380 TGATAAAATA
*
98185390 ATTTCAATTTTATAAATACAAAAATTGT
1 ATTTCAATTTTAAAAATACAAAAATTGT
* * *
98185418 ATATCAATAGTTAAATAATA-AAATATT-T
1 ATTTCAAT-TTTAAA-AATACAAAAATTGT
98185446 ATTTCAATTTTAA
1 ATTTCAATTTTAA
98185459 TCAGTGTGAT
Statistics
Matches: 33, Mismatches: 6, Indels: 5
0.75 0.14 0.11
Matches are distributed among these distances:
27 4 0.12
28 15 0.45
29 10 0.30
30 4 0.12
ACGTcount: A:0.48, C:0.06, G:0.03, T:0.43
Consensus pattern (28 bp):
ATTTCAATTTTAAAAATACAAAAATTGT
Found at i:98193368 original size:3 final size:3
Alignment explanation
Indices: 98193360--98193393 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
98193350 ATTCAGTCAT
98193360 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
98193394 CTAAAAGTCC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:98197284 original size:109 final size:107
Alignment explanation
Indices: 98197089--98197285 Score: 254
Period size: 109 Copynumber: 1.8 Consensus size: 107
98197079 CTGGATCGTC
* * * **
98197089 TTTTTTAAGTTTTAAATTGATAGTTTGTTCTTGAATTTACTCGTATTCCTGGTATTTTTGTGTAA
1 TTTTTTAAGTTTTAAATTGATAGGTTATTCTTGAATTTACGCGTATTCCTGACATTTTTGTGTAA
* * *
98197154 TTTCTTAGTAATCCGATTGGATCCTTGCTTTTTTTTTGTTGA
66 GTTCTTAGCAATCCGACTGGATCCTTGCTTTTTTTTTGTTGA
**
98197196 TTTTTTAAGTTTTAAATT-AGTAGGTTATTCTTGAATTTAATCGCGTATTTTTGACATTTTTGTG
1 TTTTTTAAGTTTTAAATTGA-TAGGTTATTCTTGAATTT-A-CGCGTATTCCTGACATTTTTGTG
98197260 TAAGTTCTTAGCAA-CTCGACTGGATC
63 TAAGTTCTTAGCAATC-CGACTGGATC
98197286 GTCATTGAAC
Statistics
Matches: 76, Mismatches: 10, Indels: 6
0.83 0.11 0.07
Matches are distributed among these distances:
106 1 0.01
107 34 0.45
108 2 0.03
109 39 0.51
ACGTcount: A:0.21, C:0.11, G:0.16, T:0.52
Consensus pattern (107 bp):
TTTTTTAAGTTTTAAATTGATAGGTTATTCTTGAATTTACGCGTATTCCTGACATTTTTGTGTAA
GTTCTTAGCAATCCGACTGGATCCTTGCTTTTTTTTTGTTGA
Found at i:98197575 original size:107 final size:106
Alignment explanation
Indices: 98197308--98197605 Score: 340
Period size: 107 Copynumber: 2.8 Consensus size: 106
98197298 ATAAAAACCA
* * * *
98197308 GACTGGATCTTCCTTTTTT-TGTTGAT-TTTTTTAAGTTTAAAATTAATAGTTTATCCTTGAATT
1 GACTGGATCTT-CTTTTTTCTGTTGATGATTTTAAAGTTTTAAATTAATAGTTTATTCTTGAATT
* *
98197371 TAATCGTATTTTTAAATATATTTGTGGAATTTCTAAGAAATGC
65 TAATCGTATTTCT-AATATTTTTGTGGAATTTCTAAGAAATGC
* * * * *
98197414 GACTGGATCGTCTTTTCTTTTGTTGAT--CTTTCAAGTTTTGAATTAATAGTTTATTCTTGAATT
1 GACTGGATCTTCTTTT-TTCTGTTGATGATTTTAAAGTTTTAAATTAATAGTTTATTCTTGAATT
* * * *
98197477 AAAAT-GTATTTCTAATATTTTTGTGTAATTTCTTAGCAAT-C
65 -TAATCGTATTTCTAATATTTTTGTGGAATTTCTAAGAAATGC
98197518 GGACTGGATCCTTACTTTTTTCTGTTG-TGATTTTAAAGTTTTAAATTAATAGTTTATTCTTGAA
1 -GACTGGAT-CTT-CTTTTTTCTGTTGATGATTTTAAAGTTTTAAATTAATAGTTTATTCTTGAA
*
98197582 TTTAATCGTATTTCTAGTATTTTT
63 TTTAATCGTATTTCTAATATTTTT
98197606 TTAGCAATCA
Statistics
Matches: 164, Mismatches: 19, Indels: 17
0.82 0.09 0.09
Matches are distributed among these distances:
104 1 0.01
105 37 0.23
106 62 0.38
107 64 0.39
ACGTcount: A:0.26, C:0.09, G:0.13, T:0.51
Consensus pattern (106 bp):
GACTGGATCTTCTTTTTTCTGTTGATGATTTTAAAGTTTTAAATTAATAGTTTATTCTTGAATTT
AATCGTATTTCTAATATTTTTGTGGAATTTCTAAGAAATGC
Found at i:98200807 original size:105 final size:105
Alignment explanation
Indices: 98200709--98200899 Score: 249
Period size: 106 Copynumber: 1.8 Consensus size: 105
98200699 TTTTTTTTTA
* * ** *
98200709 AAAAAAGTTTAAAATTAATAGTTTATCCTTGAA-TTAGATTGTATTTCTGATATTTTTGTGTAAT
1 AAAAAAGTTTAAAATTAATAGTTTAACCTGGAATTTA-ATCCTATTTCTGAT-TTTTAGTGTAAT
98200773 TTCTTAGCAATCCGACTGGATCGTCTTTTTCTTTTTGTTGAT
64 TTCTTAGCAATCCGACTGGATCGTCTTTTTCTTTTTGTTGAT
**** * *
98200815 TTTTAAGTTTTAAATTAATAGTTTAAGCTGGAATTTAATCCTATTTCTGATTTTTAGTGTAATTT
1 AAAAAAGTTTAAAATTAATAGTTTAACCTGGAATTTAATCCTATTTCTGATTTTTAGTGTAATTT
*
98200880 CTTAGCAATCCGATTGGATC
66 CTTAGCAATCCGACTGGATC
98200900 TTTTTTTTTT
Statistics
Matches: 72, Mismatches: 12, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
105 32 0.44
106 37 0.51
107 3 0.04
ACGTcount: A:0.28, C:0.10, G:0.14, T:0.48
Consensus pattern (105 bp):
AAAAAAGTTTAAAATTAATAGTTTAACCTGGAATTTAATCCTATTTCTGATTTTTAGTGTAATTT
CTTAGCAATCCGACTGGATCGTCTTTTTCTTTTTGTTGAT
Found at i:98201185 original size:111 final size:109
Alignment explanation
Indices: 98200987--98201271 Score: 380
Period size: 111 Copynumber: 2.6 Consensus size: 109
98200977 CTTACTTTTA
* ** * * * *
98200987 AGTTTAAAATTAATAGTTTATCCTTTAATTGAATCGTA-GT-TCTGGTATTTTTGTCTAATTTCT
1 AGTTTTAAATTAATAGTTTATCCTAGAATTAAATC-TATATCTCTGGTATTTTTGTGTAAATTCT
* * *
98201050 TAGCAATTCGACTGGATCGTCTCTTTTCTTGTTGATTTTTTTTTTGT
65 TAGCAATTCGACCGGATCGGCTCTTTTCCTGTTGA--TTTTTTTTGT
* * *
98201097 CGTTTTAAATTAATAGTGTATCCTAGAATTAAATCATATATCTCTGGT-TTTTTGTGTAACTTCT
1 AGTTTTAAATTAATAGTTTATCCTAGAATTAAATC-TATATCTCTGGTATTTTTGTGTAAATTCT
98201161 TAGCAATTCGACCGGATCGGCTCTTTTCCTGTTGATTTTTTTTGT
65 TAGCAATTCGACCGGATCGGCTCTTTTCCTGTTGATTTTTTTTGT
*
98201206 AGTTTTAAATTAATAGTTTATCCTAGAATTAAATC-ATATCTCTGGTATCTTTGTGTAAATTCTT
1 AGTTTTAAATTAATAGTTTATCCTAGAATTAAATCTATATCTCTGGTATTTTTGTGTAAATTCTT
98201270 AG
66 AG
98201272 TAATCCAACT
Statistics
Matches: 155, Mismatches: 17, Indels: 8
0.86 0.09 0.04
Matches are distributed among these distances:
107 11 0.07
108 17 0.11
109 43 0.28
110 31 0.20
111 47 0.30
112 6 0.04
ACGTcount: A:0.24, C:0.13, G:0.14, T:0.49
Consensus pattern (109 bp):
AGTTTTAAATTAATAGTTTATCCTAGAATTAAATCTATATCTCTGGTATTTTTGTGTAAATTCTT
AGCAATTCGACCGGATCGGCTCTTTTCCTGTTGATTTTTTTTGT
Found at i:98201310 original size:109 final size:108
Alignment explanation
Indices: 98200987--98201310 Score: 341
Period size: 109 Copynumber: 3.0 Consensus size: 108
98200977 CTTACTTTTA
* ** * * * *
98200987 AGTTTAAAATTAATAGTTTATCCTTTAATTGAATCGTAGT-TCTGGTATTTTTGTCTAATTTCTT
1 AGTTTTAAATTAATAGTTTATCCTAGAATTAAATCATA-TCTCTGGTATTTTTGTGTAAATTCTT
* *
98201051 AGCAATTCGACTGGATCGTC-TCTTTTCTTGTTGATTTTTTTTTTGT
65 AGCAATTCGACTGGATCCTCTTTTTTTCTTGTTGA---TTTTTTTGT
* * *
98201097 CGTTTTAAATTAATAGTGTATCCTAGAATTAAATCATATATCTCTGGT-TTTTTGTGTAACTTCT
1 AGTTTTAAATTAATAGTTTATCCTAGAATTAAATC--ATATCTCTGGTATTTTTGTGTAAATTCT
* ** * *
98201161 TAGCAATTCGACCGGATCGGC-TCTTTTCCTGTTGATTTTTTTTGT
64 TAGCAATTCGACTGGATCCTCTTTTTTTCTTGTTGA-TTTTTTTGT
*
98201206 AGTTTTAAATTAATAGTTTATCCTAGAATTAAATCATATCTCTGGTATCTTTGTGTAAATTCTTA
1 AGTTTTAAATTAATAGTTTATCCTAGAATTAAATCATATCTCTGGTATTTTTGTGTAAATTCTTA
* * * * *
98201271 GTAATCCAACTAGATCCTCTTGTTTTTTTTGTTGATTTTT
66 GCAATTCGACTGGATCCTCTT-TTTTTCTTGTTGATTTTT
98201311 CTTTTTTAAT
Statistics
Matches: 182, Mismatches: 26, Indels: 13
0.82 0.12 0.06
Matches are distributed among these distances:
107 11 0.06
108 28 0.15
109 49 0.27
110 39 0.21
111 47 0.26
112 8 0.04
ACGTcount: A:0.23, C:0.13, G:0.14, T:0.50
Consensus pattern (108 bp):
AGTTTTAAATTAATAGTTTATCCTAGAATTAAATCATATCTCTGGTATTTTTGTGTAAATTCTTA
GCAATTCGACTGGATCCTCTTTTTTTCTTGTTGATTTTTTTGT
Found at i:98204008 original size:33 final size:31
Alignment explanation
Indices: 98203952--98204015 Score: 85
Period size: 30 Copynumber: 2.0 Consensus size: 31
98203942 AGAAAGAAAG
*
98203952 AACATTATTATTTGGAATAGAGAT-ATAAAA
1 AACATTATTATTTGCAATAGAGATAATAAAA
98203982 AACATTATTATTTGCATGATACGAGATAATAAAA
1 AACATTATTATTTGCA--ATA-GAGATAATAAAA
98204016 TTTATAAAGT
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
30 15 0.52
32 3 0.10
33 5 0.17
34 6 0.21
ACGTcount: A:0.48, C:0.06, G:0.12, T:0.33
Consensus pattern (31 bp):
AACATTATTATTTGCAATAGAGATAATAAAA
Found at i:98205353 original size:13 final size:13
Alignment explanation
Indices: 98205327--98205360 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
98205317 ATATGAATGG
98205327 AAAAAAGTTGTAAT
1 AAAAAA-TTGTAAT
*
98205341 AAAAAATTTTAAT
1 AAAAAATTGTAAT
98205354 AAAAAAT
1 AAAAAAT
98205361 AATATACGTA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 13 0.68
14 6 0.32
ACGTcount: A:0.65, C:0.00, G:0.06, T:0.29
Consensus pattern (13 bp):
AAAAAATTGTAAT
Found at i:98207814 original size:267 final size:266
Alignment explanation
Indices: 98207321--98207821 Score: 689
Period size: 267 Copynumber: 1.9 Consensus size: 266
98207311 TGGTCATCCT
* ** * *
98207321 ACTATAAAAAATTACAAAATGGTTACTCAAATATTTAATTTTGTTTTTTAGTCACCCAACTACCT
1 ACTATAAAAAATTACAAAATAGTTACTCAAATATACAATTGTCTTTTTTAGTCACCCAACTACCT
* * * * * * * * **
98207386 TAGATTTTTGGGTGTTTCTATTTTTACGTTAGCTAGCTGGTGGCAGAAAAAGTGATCGAATTATG
66 TAGATTTTTAGGTGTTGCCATTTTTACATTAGCCAGCTGGTGACAAAAAAAGTGATCAAACAATG
** **
98207451 AAAAGTTACAAAATAATAACTCAACTGTTCATGTTTATCTATTTTAGTCACCCAACTATCTTGAA
131 AAAAGTTACAAAATAATAACGAAACTAATCATGTTTATCTATTTTAGTCACCCAACTATCTTGAA
*
98207516 TTTTTGGGTGTTTTACTGTTTTCATTTTTACGTTAGCCAACAAGACAAAATTGAATAGTCGTGGT
196 TTTTTGGGTGTTTTACTGGTTTCATTTTTACGTTAGCCAACAAGACAAAATTGAATAGTCGTGGT
98207581 TACCCA
261 TACCCA
* * *
98207587 ACTATAAAAAGTTACAAAATAGTTACTCAATTATACAATTGTCTTTTTTAGTCACCCAACTATCT
1 ACTATAAAAAATTACAAAATAGTTACTCAAATATACAATTGTCTTTTTTAGTCACCCAACTACCT
* *
98207652 TGGATTTTTAGGTGTTGCCATTTTTACATTAGCCAGCTGGTGACAAAAAAAAGTTATCAAACAAT
66 TAGATTTTTAGGTGTTGCCATTTTTACATTAGCCAGCTGGTGAC-AAAAAAAGTGATCAAACAAT
* * * * *
98207717 GAAAAGTTACAAAATAGTAACGAAACTAATCAAT-TTTGTCTTTTTTAGTCACCCAATTCTCTTG
130 GAAAAGTTACAAAATAATAACGAAACTAATC-ATGTTTATCTATTTTAGTCACCCAACTATCTTG
**
98207781 GTTTTTTGGGTGTTTTACTGGTTTCATTTTTACGTTAGCCA
194 AATTTTTGGGTGTTTTACTGGTTTCATTTTTACGTTAGCCA
98207822 GCTGGTGATA
Statistics
Matches: 201, Mismatches: 32, Indels: 3
0.85 0.14 0.01
Matches are distributed among these distances:
266 94 0.47
267 105 0.52
268 2 0.01
ACGTcount: A:0.32, C:0.15, G:0.14, T:0.39
Consensus pattern (266 bp):
ACTATAAAAAATTACAAAATAGTTACTCAAATATACAATTGTCTTTTTTAGTCACCCAACTACCT
TAGATTTTTAGGTGTTGCCATTTTTACATTAGCCAGCTGGTGACAAAAAAAGTGATCAAACAATG
AAAAGTTACAAAATAATAACGAAACTAATCATGTTTATCTATTTTAGTCACCCAACTATCTTGAA
TTTTTGGGTGTTTTACTGGTTTCATTTTTACGTTAGCCAACAAGACAAAATTGAATAGTCGTGGT
TACCCA
Found at i:98214167 original size:32 final size:32
Alignment explanation
Indices: 98214103--98214167 Score: 78
Period size: 32 Copynumber: 2.0 Consensus size: 32
98214093 ATGAAATAAT
* * *
98214103 AGCAAAACAGTGAGAAAAAGTGGGAAAACAAC
1 AGCAAAACAGTGAAAAAAAATGGCAAAACAAC
*
98214135 AGCAAAACA-TGAAAAAAAATGAGCAAATCAAC
1 AGCAAAACAGTGAAAAAAAATG-GCAAAACAAC
98214167 A
1 A
98214168 AGTTTTTTTA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
31 10 0.36
32 18 0.64
ACGTcount: A:0.60, C:0.14, G:0.18, T:0.08
Consensus pattern (32 bp):
AGCAAAACAGTGAAAAAAAATGGCAAAACAAC
Found at i:98236540 original size:23 final size:24
Alignment explanation
Indices: 98236506--98236559 Score: 101
Period size: 23 Copynumber: 2.3 Consensus size: 24
98236496 CAGCCACGTC
98236506 AATTTTTAATAGTAGAAATGGATG
1 AATTTTTAATAGTAGAAATGGATG
98236530 AATTTTT-ATAGTAGAAATGGATG
1 AATTTTTAATAGTAGAAATGGATG
98236553 AATTTTT
1 AATTTTT
98236560 TAACAAAAAT
Statistics
Matches: 30, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
23 23 0.77
24 7 0.23
ACGTcount: A:0.39, C:0.00, G:0.19, T:0.43
Consensus pattern (24 bp):
AATTTTTAATAGTAGAAATGGATG
Found at i:98236569 original size:22 final size:23
Alignment explanation
Indices: 98236521--98236570 Score: 66
Period size: 23 Copynumber: 2.2 Consensus size: 23
98236511 TTAATAGTAG
** *
98236521 AAATGGATGAATTTTTATAGTAG
1 AAATGGATGAATTTTTATAACAA
98236544 AAATGGATGAATTTTT-TAACAA
1 AAATGGATGAATTTTTATAACAA
98236566 AAATG
1 AAATG
98236571 ACTTATTTGC
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
22 8 0.33
23 16 0.67
ACGTcount: A:0.44, C:0.02, G:0.18, T:0.36
Consensus pattern (23 bp):
AAATGGATGAATTTTTATAACAA
Found at i:98238402 original size:14 final size:14
Alignment explanation
Indices: 98238385--98238413 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
98238375 GTGTAAAAGC
98238385 AATGGCTTAATGAA
1 AATGGCTTAATGAA
98238399 AATGGCTTAATGAA
1 AATGGCTTAATGAA
98238413 A
1 A
98238414 TTTAATCATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.45, C:0.07, G:0.21, T:0.28
Consensus pattern (14 bp):
AATGGCTTAATGAA
Found at i:98239931 original size:3 final size:3
Alignment explanation
Indices: 98239913--98239950 Score: 60
Period size: 3 Copynumber: 13.0 Consensus size: 3
98239903 TTGAATAAAA
*
98239913 TAT T-T TAT TTT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
98239951 ATGATGATTC
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
2 2 0.06
3 30 0.94
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (3 bp):
TAT
Found at i:98240866 original size:8 final size:9
Alignment explanation
Indices: 98240835--98240865 Score: 62
Period size: 9 Copynumber: 3.4 Consensus size: 9
98240825 TTTGATCTAT
98240835 TTTTTAAAA
1 TTTTTAAAA
98240844 TTTTTAAAA
1 TTTTTAAAA
98240853 TTTTTAAAA
1 TTTTTAAAA
98240862 TTTT
1 TTTT
98240866 ATATTATGTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (9 bp):
TTTTTAAAA
Found at i:98241834 original size:23 final size:23
Alignment explanation
Indices: 98241808--98241853 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
98241798 CAAGATTACT
98241808 CAATTTCTTCAACAACTAAACTA
1 CAATTTCTTCAACAACTAAACTA
98241831 CAATTTCTTCAACAACTAAACTA
1 CAATTTCTTCAACAACTAAACTA
98241854 GAAAAAGTCT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.43, C:0.26, G:0.00, T:0.30
Consensus pattern (23 bp):
CAATTTCTTCAACAACTAAACTA
Found at i:98243072 original size:13 final size:13
Alignment explanation
Indices: 98243054--98243080 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
98243044 GTTTTTTCAA
98243054 ATTACTCTACTAC
1 ATTACTCTACTAC
98243067 ATTACTCTACTAC
1 ATTACTCTACTAC
98243080 A
1 A
98243081 CTGAGATAAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.33, C:0.30, G:0.00, T:0.37
Consensus pattern (13 bp):
ATTACTCTACTAC
Found at i:98249060 original size:15 final size:16
Alignment explanation
Indices: 98249040--98249070 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
98249030 AATTTATTTT
98249040 TATATTTGAT-TTAAA
1 TATATTTGATATTAAA
98249055 TATATTTGATATTAAA
1 TATATTTGATATTAAA
98249071 ATTTCAATCC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 10 0.67
16 5 0.33
ACGTcount: A:0.42, C:0.00, G:0.06, T:0.52
Consensus pattern (16 bp):
TATATTTGATATTAAA
Found at i:98253232 original size:16 final size:16
Alignment explanation
Indices: 98253211--98253242 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
98253201 TATAAGGAGA
*
98253211 AATTCATGCACGTAAG
1 AATTCATGCACATAAG
98253227 AATTCATGCACATAAG
1 AATTCATGCACATAAG
98253243 TCTTGTGGAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.41, C:0.19, G:0.16, T:0.25
Consensus pattern (16 bp):
AATTCATGCACATAAG
Found at i:98257807 original size:16 final size:16
Alignment explanation
Indices: 98257786--98257817 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
98257776 ACCAAGGAGA
*
98257786 AATTCATGCACGTAAG
1 AATTCATGCACATAAG
98257802 AATTCATGCACATAAG
1 AATTCATGCACATAAG
98257818 TCTTGCGAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.41, C:0.19, G:0.16, T:0.25
Consensus pattern (16 bp):
AATTCATGCACATAAG
Found at i:98258601 original size:23 final size:22
Alignment explanation
Indices: 98258561--98258613 Score: 63
Period size: 21 Copynumber: 2.4 Consensus size: 22
98258551 GTTACAGATT
* *
98258561 ATTTAATTTATTTTATATTG-A
1 ATTTTATTTATTTTATATGGTA
98258582 ATTTTATTTATATTTCATATGGTA
1 ATTTTATTTAT-TTT-ATATGGTA
98258606 ATTTTATT
1 ATTTTATT
98258614 GTAAGTGTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
21 10 0.37
22 3 0.11
23 5 0.19
24 9 0.33
ACGTcount: A:0.30, C:0.02, G:0.06, T:0.62
Consensus pattern (22 bp):
ATTTTATTTATTTTATATGGTA
Found at i:98263124 original size:16 final size:16
Alignment explanation
Indices: 98263103--98263139 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
98263093 TTACACACAC
*
98263103 ATACATATATATAGAT
1 ATACATATATAGAGAT
*
98263119 ATACATATATAGATAT
1 ATACATATATAGAGAT
98263135 ATACA
1 ATACA
98263140 CGCAAGTGAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.51, C:0.08, G:0.05, T:0.35
Consensus pattern (16 bp):
ATACATATATAGAGAT
Found at i:98263128 original size:14 final size:14
Alignment explanation
Indices: 98263109--98263135 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
98263099 ACACATACAT
98263109 ATATATAGATATAC
1 ATATATAGATATAC
98263123 ATATATAGATATA
1 ATATATAGATATA
98263136 TACACGCAAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.52, C:0.04, G:0.07, T:0.37
Consensus pattern (14 bp):
ATATATAGATATAC
Found at i:98265141 original size:12 final size:13
Alignment explanation
Indices: 98265119--98265147 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
98265109 ATTTTTTAAA
98265119 AAATAATAAATAT
1 AAATAATAAATAT
98265132 AAAT-ATAAATAT
1 AAATAATAAATAT
98265144 AAAT
1 AAAT
98265148 CATTTTAATA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 12 0.75
13 4 0.25
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (13 bp):
AAATAATAAATAT
Found at i:98272259 original size:2 final size:2
Alignment explanation
Indices: 98272252--98272276 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
98272242 TTATCATTGC
98272252 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
98272277 ACTATTAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:98272999 original size:28 final size:29
Alignment explanation
Indices: 98272946--98273008 Score: 76
Period size: 28 Copynumber: 2.2 Consensus size: 29
98272936 TTTAAAATAA
* *
98272946 TTTTAATTTAAAATTAAAATTAATGAATT
1 TTTTAATTAAAAATTAAAAATAATGAATT
*
98272975 TTTTAA-TAAAAATTAAATAAT-ATGATTT
1 TTTTAATTAAAAATTAAA-AATAATGAATT
98273003 TTTTAA
1 TTTTAA
98273009 AAATGATTTA
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
28 22 0.73
29 8 0.27
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.49
Consensus pattern (29 bp):
TTTTAATTAAAAATTAAAAATAATGAATT
Found at i:98277062 original size:22 final size:22
Alignment explanation
Indices: 98277031--98277072 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
98277021 TAGAAAAAAG
98277031 TTTAATCAAAT-AAAAAATTAA
1 TTTAATCAAATCAAAAAATTAA
*
98277052 TTTAGATCAAATCAAATAATT
1 TTTA-ATCAAATCAAAAAATT
98277073 GAAGTGATGA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 4 0.22
22 7 0.39
23 7 0.39
ACGTcount: A:0.55, C:0.07, G:0.02, T:0.36
Consensus pattern (22 bp):
TTTAATCAAATCAAAAAATTAA
Found at i:98283220 original size:18 final size:18
Alignment explanation
Indices: 98283189--98283223 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
98283179 ACAGAGATTT
98283189 TGTTTTTTTGAGTTTGAG
1 TGTTTTTTTGAGTTTGAG
98283207 TGTTTGTTTT-AGTTTGA
1 TGTTT-TTTTGAGTTTGA
98283224 AAGTGAGTGA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 12 0.75
19 4 0.25
ACGTcount: A:0.11, C:0.00, G:0.26, T:0.63
Consensus pattern (18 bp):
TGTTTTTTTGAGTTTGAG
Found at i:98295545 original size:30 final size:30
Alignment explanation
Indices: 98295511--98295569 Score: 109
Period size: 30 Copynumber: 2.0 Consensus size: 30
98295501 AAAGACTCTA
98295511 TGGCATGTCAACTATATCTAATTTAGTTTT
1 TGGCATGTCAACTATATCTAATTTAGTTTT
*
98295541 TGGCATGTCAACTATATCTGATTTAGTTT
1 TGGCATGTCAACTATATCTAATTTAGTTT
98295570 AACTTAGTAA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.25, C:0.14, G:0.15, T:0.46
Consensus pattern (30 bp):
TGGCATGTCAACTATATCTAATTTAGTTTT
Found at i:98295874 original size:5 final size:5
Alignment explanation
Indices: 98295864--98295889 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
98295854 AAAACTCACC
98295864 AAAAT AAAAT AAAAT AAAAT AAAAT A
1 AAAAT AAAAT AAAAT AAAAT AAAAT A
98295890 TAACTAGTCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:98299197 original size:4 final size:4
Alignment explanation
Indices: 98299188--98299218 Score: 62
Period size: 4 Copynumber: 7.8 Consensus size: 4
98299178 AACATTATCT
98299188 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATA
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATA
98299219 TATATTGTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 27 1.00
ACGTcount: A:0.52, C:0.23, G:0.00, T:0.26
Consensus pattern (4 bp):
ATAC
Found at i:98301921 original size:20 final size:21
Alignment explanation
Indices: 98301888--98301926 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
98301878 ATGGAATCAA
98301888 AAAAAATTCAAACTTTAATGC
1 AAAAAATTCAAACTTTAATGC
*
98301909 AAAAAATT-TAACTTTAAT
1 AAAAAATTCAAACTTTAAT
98301927 TGTAAATCAG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 9 0.53
21 8 0.47
ACGTcount: A:0.54, C:0.10, G:0.03, T:0.33
Consensus pattern (21 bp):
AAAAAATTCAAACTTTAATGC
Found at i:98302338 original size:12 final size:12
Alignment explanation
Indices: 98302323--98302347 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
98302313 CCCAGCTTGC
98302323 GCCTCCGCCTCA
1 GCCTCCGCCTCA
98302335 GCCTCCGCCTCA
1 GCCTCCGCCTCA
98302347 G
1 G
98302348 GCCGGTGAGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.08, C:0.56, G:0.20, T:0.16
Consensus pattern (12 bp):
GCCTCCGCCTCA
Found at i:98303601 original size:53 final size:52
Alignment explanation
Indices: 98303526--98303645 Score: 159
Period size: 53 Copynumber: 2.2 Consensus size: 52
98303516 AAACATGTAA
*
98303526 AAAAAAAAAAGAATTTTTTGGGTGCTAGTCATGTAATGGCAAACACCAGATAT
1 AAAAAAAAAA-ATTTTTTTGGGTGCTAGTCATGTAATGGCAAACACCAGATAT
* * **
98303579 GAAAAAAAAAAATTTTTTTGGGTGCTGGTCATTTAATGGCCGACACCAGATAT
1 -AAAAAAAAAAATTTTTTTGGGTGCTAGTCATGTAATGGCAAACACCAGATAT
98303632 ATAAAAATAAAAAT
1 A-AAAAA-AAAAAT
98303646 AAAAATTTTT
Statistics
Matches: 59, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
52 1 0.02
53 42 0.71
54 16 0.27
ACGTcount: A:0.44, C:0.11, G:0.17, T:0.28
Consensus pattern (52 bp):
AAAAAAAAAAATTTTTTTGGGTGCTAGTCATGTAATGGCAAACACCAGATAT
Found at i:98304765 original size:160 final size:160
Alignment explanation
Indices: 98304528--98304891 Score: 694
Period size: 160 Copynumber: 2.3 Consensus size: 160
98304518 CACCATTGCC
*
98304528 AAATTGACAT-AAGAAAGTGCTTGGATAGTAGGTAGGTAAGGCAACACCAACACACACTTTCTAC
1 AAATTGACATGAAG-AAGTGCTTGGATAATAGGTAGGTAAGGCAACACCAACACACACTTTCTAC
98304592 TATGCCCATCAATGGCTCATTAACATGGCTCGTTGCTTAATAGGAAGATATTGTCCTTCCACATA
65 TATGCCCATCAATGGCTCATTAACATGGCTCGTTGCTTAATAGGAAGATATTGTCCTTCCACATA
98304657 TCGGTGAGTTTAAAGGATTAGCACCACCCCA
130 TCGGTGAGTTTAAAGGATTAGCACCACCCCA
*
98304688 AAATTGACATGAAGAAGTGCTTGGATAATAGGTAGATAAGGCAACACCAACACACACTTTCTACT
1 AAATTGACATGAAGAAGTGCTTGGATAATAGGTAGGTAAGGCAACACCAACACACACTTTCTACT
98304753 ATGCCCATCAATGGCTCATTAACATGGCTCGTTGCTTAATAGGAAGATATTGTCCTTCCACATAT
66 ATGCCCATCAATGGCTCATTAACATGGCTCGTTGCTTAATAGGAAGATATTGTCCTTCCACATAT
98304818 CGGTGAGTTTAAAGGATTAGCACCACCCCA
131 CGGTGAGTTTAAAGGATTAGCACCACCCCA
98304848 AAATTGACATGAAGAAGTGCTTGGATAATAGGTAGGTAAGGCAA
1 AAATTGACATGAAGAAGTGCTTGGATAATAGGTAGGTAAGGCAA
98304892 ATTCTATTGA
Statistics
Matches: 200, Mismatches: 3, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
160 197 0.99
161 3 0.01
ACGTcount: A:0.34, C:0.20, G:0.20, T:0.26
Consensus pattern (160 bp):
AAATTGACATGAAGAAGTGCTTGGATAATAGGTAGGTAAGGCAACACCAACACACACTTTCTACT
ATGCCCATCAATGGCTCATTAACATGGCTCGTTGCTTAATAGGAAGATATTGTCCTTCCACATAT
CGGTGAGTTTAAAGGATTAGCACCACCCCA
Found at i:98308741 original size:16 final size:16
Alignment explanation
Indices: 98308715--98308747 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
98308705 ATAAATTATT
98308715 TAAAAATTATA-AAAA
1 TAAAAATTATATAAAA
98308730 TAAAAATATATATAAAA
1 TAAAAAT-TATATAAAA
98308747 T
1 T
98308748 TTGATTTAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 7 0.44
16 4 0.25
17 5 0.31
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (16 bp):
TAAAAATTATATAAAA
Found at i:98308800 original size:62 final size:63
Alignment explanation
Indices: 98308707--98308831 Score: 243
Period size: 62 Copynumber: 2.0 Consensus size: 63
98308697 TTAATTAAAT
98308707 AAATTATTTAAAAATTATAAAAATAAAAATATATATAAAATTTGATTTAATTAATTCAATCGA
1 AAATTATTTAAAAATTATAAAAATAAAAATATATATAAAATTTGATTTAATTAATTCAATCGA
98308770 AAATTATTTAAAAATTAT-AAAATAAAAATATATATAAAATTTGATTTAATTAATTCAATCGA
1 AAATTATTTAAAAATTATAAAAATAAAAATATATATAAAATTTGATTTAATTAATTCAATCGA
98308832 TTTTTTATCT
Statistics
Matches: 62, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
62 44 0.71
63 18 0.29
ACGTcount: A:0.55, C:0.03, G:0.03, T:0.38
Consensus pattern (63 bp):
AAATTATTTAAAAATTATAAAAATAAAAATATATATAAAATTTGATTTAATTAATTCAATCGA
Found at i:98310662 original size:31 final size:32
Alignment explanation
Indices: 98310610--98310669 Score: 95
Period size: 31 Copynumber: 1.9 Consensus size: 32
98310600 CTTAACACCC
*
98310610 CAATGACTTAAATAAAAAACTTTTAAATAATT
1 CAATAACTTAAATAAAAAACTTTTAAATAATT
*
98310642 CAATAACTTAAAT-AAAAACTTTTGAATA
1 CAATAACTTAAATAAAAAACTTTTAAATA
98310670 TTTTACTGAC
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
31 14 0.54
32 12 0.46
ACGTcount: A:0.53, C:0.10, G:0.03, T:0.33
Consensus pattern (32 bp):
CAATAACTTAAATAAAAAACTTTTAAATAATT
Found at i:98326308 original size:4 final size:4
Alignment explanation
Indices: 98326293--98326348 Score: 76
Period size: 4 Copynumber: 14.0 Consensus size: 4
98326283 AGAAAAAAAC
* * * *
98326293 GTAT GCAT GTAT GTAT GTAT ATAC ATAT GTAT GTAT GTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
98326341 GTAT GTAT
1 GTAT GTAT
98326349 TGATATTTGG
Statistics
Matches: 46, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
4 46 1.00
ACGTcount: A:0.29, C:0.04, G:0.21, T:0.46
Consensus pattern (4 bp):
GTAT
Found at i:98330045 original size:6 final size:6
Alignment explanation
Indices: 98330034--98330061 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
98330024 CAATTTGATT
98330034 AAAAAG AAAAAG AAAAAG AAAAAG AAAA
1 AAAAAG AAAAAG AAAAAG AAAAAG AAAA
98330062 CACCATATGT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.86, C:0.00, G:0.14, T:0.00
Consensus pattern (6 bp):
AAAAAG
Found at i:98341581 original size:35 final size:35
Alignment explanation
Indices: 98341537--98341703 Score: 201
Period size: 35 Copynumber: 4.6 Consensus size: 35
98341527 TCCTCATTGA
** *
98341537 AATACCATACCTACATTTTTCAACTCGGTATGGGA-
1 AATACCATACCTACATTTCACAACTCAGTAT-GGAT
* **
98341572 AATGCCATACCTACATTTCTTAACTCAGTATGGATTTGAT
1 AATACCATACCTACATTTCACAACTCAGTAT-G----GAT
*
98341612 AATACCATACCTACATTTCACAGCTCAGTATGGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
98341647 AATACCATACCTACATTTCACAACTCAGTATGGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
*
98341682 GATACCATACCTACATTTCACA
1 AATACCATACCTACATTTCACA
98341704 CTTTGCCATG
Statistics
Matches: 117, Mismatches: 10, Indels: 10
0.85 0.07 0.07
Matches are distributed among these distances:
35 87 0.74
39 3 0.03
40 27 0.23
ACGTcount: A:0.34, C:0.25, G:0.11, T:0.31
Consensus pattern (35 bp):
AATACCATACCTACATTTCACAACTCAGTATGGAT
Found at i:98341620 original size:75 final size:73
Alignment explanation
Indices: 98341532--98341703 Score: 226
Period size: 75 Copynumber: 2.4 Consensus size: 73
98341522 GGTTTTCCTC
** * * **
98341532 ATTGAAATACCATACCTACATTTTTCAACTCGGTATGGGA-AATGCCATACCTACATTTCTTAAC
1 ATTGAAATACCATACCTACATTTCACAACTCAGTAT-GGATAATACCATACCTACATTTCACAAC
98341596 TCAGTATGG
65 TCAGTATGG
*
98341605 ATTTGATAATACCATACCTACATTTCACAGCTCAGTATGGATAATACCATACCTACATTTCACAA
1 A-TTGA-AATACCATACCTACATTTCACAACTCAGTATGGATAATACCATACCTACATTTCACAA
98341670 CTCAGTATGG
64 CTCAGTATGG
98341680 A-TG--ATACCATACCTACATTTCACA
1 ATTGAAATACCATACCTACATTTCACA
98341704 CTTTGCCATG
Statistics
Matches: 89, Mismatches: 7, Indels: 9
0.85 0.07 0.09
Matches are distributed among these distances:
70 21 0.24
73 3 0.03
74 7 0.08
75 58 0.65
ACGTcount: A:0.34, C:0.24, G:0.11, T:0.31
Consensus pattern (73 bp):
ATTGAAATACCATACCTACATTTCACAACTCAGTATGGATAATACCATACCTACATTTCACAACT
CAGTATGG
Found at i:98351896 original size:13 final size:13
Alignment explanation
Indices: 98351878--98351905 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
98351868 TGCGCCGCAA
98351878 CCCTCACTAGCAG
1 CCCTCACTAGCAG
98351891 CCCTCACTAGCAG
1 CCCTCACTAGCAG
98351904 CC
1 CC
98351906 TAGCCACTCC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.21, C:0.50, G:0.14, T:0.14
Consensus pattern (13 bp):
CCCTCACTAGCAG
Found at i:98353863 original size:14 final size:14
Alignment explanation
Indices: 98353844--98353873 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
98353834 TACTTGATTG
98353844 TTAGTCCATCATTT
1 TTAGTCCATCATTT
*
98353858 TTAGTCCATTATTT
1 TTAGTCCATCATTT
98353872 TT
1 TT
98353874 GTGTCGTGTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.20, C:0.17, G:0.07, T:0.57
Consensus pattern (14 bp):
TTAGTCCATCATTT
Found at i:98354458 original size:131 final size:132
Alignment explanation
Indices: 98354211--98354493 Score: 415
Period size: 131 Copynumber: 2.2 Consensus size: 132
98354201 TCATTCATTC
** * *
98354211 AAAAATTCTTCAAAACGAAGACGAGATTCGATGTTTGGCAATTCGTGGAATCGTGCCCTAACGTG
1 AAAAATTCTTCAAAACGAAGACGAGATTCGATACTTAGCAATTCGCGGAATCGTGCCCTAACGTG
*
98354276 TTGGGTTGCAATTTCACGTTTGCTCAAAATAATCGAATATCACTTCGAAATTTCACTCACATCTT
66 TTGGGTTGCAATTTCACGTTTGCTCAAAATAATCGAATATCACTTCAAAATTTCACTCACATCTT
98354341 -T
131 CT
* *
98354342 TAAAATTCTTCAAAACGAAGACGAGATTCGATACTTAGCAATTCGCGGAATCGTGCTCTAACGTG
1 AAAAATTCTTCAAAACGAAGACGAGATTCGATACTTAGCAATTCGCGGAATCGTGCCCTAACGTG
* * * * * * *
98354407 TTGGGTTGCAATTTCGCGTTTGCTCAAAGTAGTCGAGTATCCCTTCAAAATTTCATTCATATCTT
66 TTGGGTTGCAATTTCACGTTTGCTCAAAATAATCGAATATCACTTCAAAATTTCACTCACATCTT
98354472 CT
131 CT
* *
98354474 AAAAATTATTTAAAACGAAG
1 AAAAATTCTTCAAAACGAAG
98354494 GCAATATTCG
Statistics
Matches: 134, Mismatches: 17, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
131 116 0.87
132 18 0.13
ACGTcount: A:0.31, C:0.19, G:0.17, T:0.32
Consensus pattern (132 bp):
AAAAATTCTTCAAAACGAAGACGAGATTCGATACTTAGCAATTCGCGGAATCGTGCCCTAACGTG
TTGGGTTGCAATTTCACGTTTGCTCAAAATAATCGAATATCACTTCAAAATTTCACTCACATCTT
CT
Found at i:98354524 original size:131 final size:130
Alignment explanation
Indices: 98354211--98354566 Score: 347
Period size: 131 Copynumber: 2.7 Consensus size: 130
98354201 TCATTCATTC
* * ** * * **
98354211 AAAAATTCTTCAAAACGAAGACGAGATTCGATGTTTGGCAATTCGTGGAATCGTGCCCTAACGTG
1 AAAAATTATTCAAAACGAAGACAAGATTCGA-ACTTAGAAATTCGCAGAATCGTGCCCTAACGTG
*
98354276 TTGGGTTGCAATTTCACGTTTGCTCAAAATAATCGAATATCACTTCGAAATTTCACTCACATCTT
65 TTGGGTTGCAATTTCACGTTTGCTCAAAATAATCGAATATCACTTCAAAATTTCACTCACATCTT
98354341 T
130 T
* * * * * *
98354342 TAAAATTCTTCAAAACGAAGACGAGATTCGATACTTAGCAATTCGCGGAATCGTGCTCTAACGTG
1 AAAAATTATTCAAAACGAAGACAAGATTCGA-ACTTAGAAATTCGCAGAATCGTGCCCTAACGTG
* * * * * * *
98354407 TTGGGTTGCAATTTCGCGTTTGCTCAAAGTAGTCGAGTATCCCTTCAAAATTTCATTCATATCTT
65 TTGGGTTGCAATTTCACGTTTGCTCAAAATAATCGAATATCACTTCAAAATTTCACTCACATCTT
98354472 CT
130 -T
* * * * * * *
98354474 AAAAATTATTTAAAACGAAGGCAATATTCG-GCGTTTGAAAATTCG-AGAATCATGCCCTATCGT
1 AAAAATTATTCAAAACGAAGACAAGATTCGAAC-TTAG-AAATTCGCAGAATCGTGCCCTAACGT
* ** * *
98354537 GCTGGGTTGTGATTTCTCGTTTACTCAAAA
64 GTTGGGTTGCAATTTCACGTTTGCTCAAAA
98354567 CGATCGAACA
Statistics
Matches: 189, Mismatches: 33, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
130 1 0.01
131 157 0.83
132 31 0.16
ACGTcount: A:0.30, C:0.19, G:0.18, T:0.33
Consensus pattern (130 bp):
AAAAATTATTCAAAACGAAGACAAGATTCGAACTTAGAAATTCGCAGAATCGTGCCCTAACGTGT
TGGGTTGCAATTTCACGTTTGCTCAAAATAATCGAATATCACTTCAAAATTTCACTCACATCTTT
Found at i:98354863 original size:130 final size:130
Alignment explanation
Indices: 98354629--98354870 Score: 324
Period size: 130 Copynumber: 1.9 Consensus size: 130
98354619 ACAAAGACGA
* * *
98354629 TGTTCAATGTTTGGCGATTTGAGAATCGTGCCCTATCGTGCTGGGTTGCGCTTTTTCATTGGTTC
1 TGTTCAATGTTTGACGATTTGAGAATCGAGCCCTATCGTGCTGGGTTGCGCTTTTTCATTGGTCC
* * * * * *
98354694 GAAACAATTGAAGATCCCTTCGGAGTTTCACTCACATTTTCTAAAATCTTTCAAAATGAAGGCGG
66 AAAACAATCGAAGATCCCTTCAGAATTTCACACACATTTTATAAAATCTTTCAAAATGAAGGCGG
* * *
98354759 TGTTCGATGTTTGACGATTTGAGAATCGAGCCCTATTGTGCTGGGTTGCGCTTTTTCATTTGTCC
1 TGTTCAATGTTTGACGATTTGAGAATCGAGCCCTATCGTGCTGGGTTGCGCTTTTTCATTGGTCC
* * **
98354824 AAAATAATCGAATATCTCC-TCAGAATTTCACACGTATTTTATAAAAT
66 AAAACAATCGAAGATC-CCTTCAGAATTTCACACACATTTTATAAAAT
98354871 AAGGCAATGG
Statistics
Matches: 95, Mismatches: 16, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
130 93 0.98
131 2 0.02
ACGTcount: A:0.24, C:0.19, G:0.20, T:0.37
Consensus pattern (130 bp):
TGTTCAATGTTTGACGATTTGAGAATCGAGCCCTATCGTGCTGGGTTGCGCTTTTTCATTGGTCC
AAAACAATCGAAGATCCCTTCAGAATTTCACACACATTTTATAAAATCTTTCAAAATGAAGGCGG
Found at i:98358728 original size:21 final size:22
Alignment explanation
Indices: 98358684--98358728 Score: 56
Period size: 21 Copynumber: 2.0 Consensus size: 22
98358674 AGTATAAATA
*
98358684 TATATACATATATCATATAAGTT
1 TATATACA-ATATCATACAAGTT
*
98358707 TATATAC-ATATCATACATGTT
1 TATATACAATATCATACAAGTT
98358728 T
1 T
98358729 CCTTATTTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 13 0.65
23 7 0.35
ACGTcount: A:0.40, C:0.11, G:0.04, T:0.44
Consensus pattern (22 bp):
TATATACAATATCATACAAGTT
Found at i:98358850 original size:21 final size:20
Alignment explanation
Indices: 98358822--98358862 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 20
98358812 TAGTATATGT
* *
98358822 TTTCTGTATGTATGTATATA
1 TTTCTGTATATATATATATA
98358842 TTTCTTGTATATATATATATA
1 TTTC-TGTATATATATATATA
98358863 GGTATATATC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.29, C:0.05, G:0.10, T:0.56
Consensus pattern (20 bp):
TTTCTGTATATATATATATA
Found at i:98358969 original size:24 final size:23
Alignment explanation
Indices: 98358915--98358973 Score: 57
Period size: 24 Copynumber: 2.5 Consensus size: 23
98358905 TTCTCAATGT
* *
98358915 GTATATACTATGTAAATGTTTTA
1 GTATATAATATATAAATGTTTTA
*
98358938 GTACTATAATATATATATGTTTTTA
1 GTA-TATAATATATAAATG-TTTTA
*
98358963 TTATAT-ATATA
1 GTATATAATATA
98358974 CATTACGTAT
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
23 8 0.27
24 15 0.50
25 7 0.23
ACGTcount: A:0.37, C:0.03, G:0.08, T:0.51
Consensus pattern (23 bp):
GTATATAATATATAAATGTTTTA
Found at i:98359970 original size:3 final size:3
Alignment explanation
Indices: 98359962--98359991 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
98359952 TTTCTTAATA
98359962 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
98359992 AAACCTTTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:98360901 original size:7 final size:7
Alignment explanation
Indices: 98360889--98360922 Score: 68
Period size: 7 Copynumber: 4.9 Consensus size: 7
98360879 TATAAGATTT
98360889 AGGTTTG
1 AGGTTTG
98360896 AGGTTTG
1 AGGTTTG
98360903 AGGTTTG
1 AGGTTTG
98360910 AGGTTTG
1 AGGTTTG
98360917 AGGTTT
1 AGGTTT
98360923 AGAGTTTAAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 27 1.00
ACGTcount: A:0.15, C:0.00, G:0.41, T:0.44
Consensus pattern (7 bp):
AGGTTTG
Found at i:98360990 original size:7 final size:7
Alignment explanation
Indices: 98360980--98361006 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
98360970 TTGAGGTTTA
98360980 GGATTTT
1 GGATTTT
98360987 GGATTTT
1 GGATTTT
98360994 GGATTTT
1 GGATTTT
98361001 GGATTT
1 GGATTT
98361007 GAGGTTCAAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.15, C:0.00, G:0.30, T:0.56
Consensus pattern (7 bp):
GGATTTT
Found at i:98361256 original size:20 final size:20
Alignment explanation
Indices: 98361214--98361257 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
98361204 CCAAACTTTA
* *
98361214 AACCTCAAACCCAAATCTCG
1 AACCTCAAACACAAAACTCG
98361234 AACCTCAAACACAAACACT-G
1 AACCTCAAACACAAA-ACTCG
98361254 AACC
1 AACC
98361258 ATGAGCCATG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 19 0.90
21 2 0.10
ACGTcount: A:0.45, C:0.39, G:0.05, T:0.11
Consensus pattern (20 bp):
AACCTCAAACACAAAACTCG
Found at i:98361314 original size:7 final size:7
Alignment explanation
Indices: 98361252--98361331 Score: 83
Period size: 7 Copynumber: 11.7 Consensus size: 7
98361242 ACACAAACAC
*
98361252 TGAACCA
1 TGAACCT
* *
98361259 TGAGCCA
1 TGAACCT
*
98361266 TGAACCC
1 TGAACCT
98361273 TGAACC-
1 TGAACCT
98361279 TGAACC-
1 TGAACCT
98361285 TGAACCT
1 TGAACCT
98361292 TGAACCT
1 TGAACCT
98361299 TGAACCT
1 TGAACCT
*
98361306 TGAAACT
1 TGAACCT
*
98361313 TGAAACT
1 TGAACCT
*
98361320 TGAACTT
1 TGAACCT
98361327 TGAAC
1 TGAAC
98361332 ACGAACCCAA
Statistics
Matches: 66, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
6 12 0.18
7 54 0.82
ACGTcount: A:0.34, C:0.26, G:0.16, T:0.24
Consensus pattern (7 bp):
TGAACCT
Found at i:98361359 original size:14 final size:14
Alignment explanation
Indices: 98361252--98361359 Score: 73
Period size: 14 Copynumber: 8.0 Consensus size: 14
98361242 ACACAAACAC
* * *
98361252 TGAACCATGAGCCA
1 TGAACCCTGAACCT
98361266 TGAACCCTGAACC-
1 TGAACCCTGAACCT
98361279 TGAA-CCTGAACCT
1 TGAACCCTGAACCT
*
98361292 TGAACCTTGAACCT
1 TGAACCCTGAACCT
* * *
98361306 TGAAACTTGAAACT
1 TGAACCCTGAACCT
**
98361320 TGAACTTTGAACAC-
1 TGAACCCTGAAC-CT
*
98361334 -GAACCC-AAACCT
1 TGAACCCTGAACCT
*
98361346 TGAACCCTAAACCT
1 TGAACCCTGAACCT
98361360 AAAACTTTAA
Statistics
Matches: 77, Mismatches: 11, Indels: 12
0.77 0.11 0.12
Matches are distributed among these distances:
11 1 0.01
12 11 0.14
13 18 0.23
14 46 0.60
15 1 0.01
ACGTcount: A:0.35, C:0.30, G:0.14, T:0.21
Consensus pattern (14 bp):
TGAACCCTGAACCT
Found at i:98361571 original size:20 final size:20
Alignment explanation
Indices: 98361532--98361571 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
98361522 TTAAGGTTCG
*
98361532 AGGTTTGAGATTTTGAGTTT
1 AGGTTTGAGATTTAGAGTTT
* *
98361552 AGGTTTGAGGTTTAGGGTTT
1 AGGTTTGAGATTTAGAGTTT
98361572 TGAGTTTCGG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.17, C:0.00, G:0.35, T:0.47
Consensus pattern (20 bp):
AGGTTTGAGATTTAGAGTTT
Found at i:98361572 original size:27 final size:28
Alignment explanation
Indices: 98361509--98361578 Score: 83
Period size: 27 Copynumber: 2.6 Consensus size: 28
98361499 AACCATGAAC
*
98361509 TTGA-ATTTAGAGTTTAAGGTTCGAGGT
1 TTGAGATTTTGAGTTTAAGGTTCGAGGT
*
98361536 TTGAGATTTTGAGTTT-AGGTTTGAGGT
1 TTGAGATTTTGAGTTTAAGGTTCGAGGT
*
98361563 TT-AGGGTTTTGAGTTT
1 TTGA-GATTTTGAGTTT
98361579 CGGATAAAAA
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
26 1 0.03
27 27 0.71
28 10 0.26
ACGTcount: A:0.20, C:0.01, G:0.31, T:0.47
Consensus pattern (28 bp):
TTGAGATTTTGAGTTTAAGGTTCGAGGT
Found at i:98366725 original size:31 final size:30
Alignment explanation
Indices: 98366690--98366771 Score: 92
Period size: 31 Copynumber: 2.6 Consensus size: 30
98366680 TAAGCCCTTG
* * *
98366690 AAAATTTTTGAAAATTTTAGCTAGGTCTTTC
1 AAAATTTTTGAAAATTTTA-CTAAGCCTCTC
* *
98366721 AAAATTTTTAGAAATTTTTATTAAGCCTCTC
1 AAAATTTTT-GAAAATTTTACTAAGCCTCTC
98366752 AAAATTTTTGAAAAATTTTA
1 AAAATTTTTG-AAAATTTTA
98366772 ATTAAACCGC
Statistics
Matches: 43, Mismatches: 6, Indels: 4
0.81 0.11 0.08
Matches are distributed among these distances:
30 1 0.02
31 33 0.77
32 9 0.21
ACGTcount: A:0.38, C:0.09, G:0.09, T:0.45
Consensus pattern (30 bp):
AAAATTTTTGAAAATTTTACTAAGCCTCTC
Found at i:98366796 original size:30 final size:31
Alignment explanation
Indices: 98366719--98366865 Score: 115
Period size: 31 Copynumber: 4.8 Consensus size: 31
98366709 GCTAGGTCTT
* * * *
98366719 TCAAAATTTTTAGAAATTTTTATTAAGCCTC
1 TCAAAATTTTTAAAAATTTTAATTAAACCGC
98366750 TCAAAATTTTTGAAAAATTTTAATTAAACCGC
1 TCAAAATTTTT-AAAAATTTTAATTAAACCGC
* *
98366782 -C-AAATTTTATAAAAATTTTCATT-AACCCC
1 TCAAAATTTT-TAAAAATTTTAATTAAACCGC
* * * *
98366811 TCCAAAAGTTTTGAAAGTCTTAATTAAACC-C
1 T-CAAAATTTTTAAAAATTTTAATTAAACCGC
* **
98366842 T-TAAATTTTTTGAAATTTTAATTA
1 TCAAAATTTTTAAAAATTTTAATTA
98366866 GCCCCCTCAA
Statistics
Matches: 93, Mismatches: 17, Indels: 14
0.75 0.14 0.11
Matches are distributed among these distances:
29 22 0.24
30 19 0.20
31 26 0.28
32 26 0.28
ACGTcount: A:0.39, C:0.14, G:0.05, T:0.41
Consensus pattern (31 bp):
TCAAAATTTTTAAAAATTTTAATTAAACCGC
Found at i:98366848 original size:61 final size:61
Alignment explanation
Indices: 98366722--98366877 Score: 156
Period size: 61 Copynumber: 2.6 Consensus size: 61
98366712 AGGTCTTTCA
* * * * *
98366722 AAATTTTTAGAAATTTTTATTAAGCCTCTCAAAATTTTTGAAAAATTTTAATTAAACCGCC
1 AAATTTTTAAAAATTTTCATTAACCCTCTCAAAAGTTTTGAAAAATCTTAATTAAACCGCC
* *
98366783 AAATTTTATAAAAATTTTCATTAACCC-CTCCAAAAGTTTTG-AAAGTCTTAATTAAACC-CTT
1 AAATTTT-TAAAAATTTTCATTAACCCTCT-CAAAAGTTTTGAAAAATCTTAATTAAACCGC-C
** * * *
98366844 AAATTTTTTGAAATTTTAATTAGCCCCCTCAAAA
1 AAATTTTTAAAAATTTTCATTAACCCTCTCAAAA
98366878 AAACAAACCT
Statistics
Matches: 80, Mismatches: 11, Indels: 9
0.80 0.11 0.09
Matches are distributed among these distances:
60 21 0.26
61 33 0.41
62 26 0.32
ACGTcount: A:0.39, C:0.16, G:0.06, T:0.39
Consensus pattern (61 bp):
AAATTTTTAAAAATTTTCATTAACCCTCTCAAAAGTTTTGAAAAATCTTAATTAAACCGCC
Found at i:98374353 original size:4 final size:4
Alignment explanation
Indices: 98374344--98374385 Score: 52
Period size: 4 Copynumber: 11.0 Consensus size: 4
98374334 CTTATATTGA
* *
98374344 ACAT ACAT ACAT ACAC ACAT --AT ACAT ACAT ACAT ACAC ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
98374386 GCATGCATGC
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
2 2 0.06
4 30 0.94
ACGTcount: A:0.50, C:0.29, G:0.00, T:0.21
Consensus pattern (4 bp):
ACAT
Found at i:98374369 original size:22 final size:22
Alignment explanation
Indices: 98374344--98374385 Score: 84
Period size: 22 Copynumber: 1.9 Consensus size: 22
98374334 CTTATATTGA
98374344 ACATACATACATACACACATAT
1 ACATACATACATACACACATAT
98374366 ACATACATACATACACACAT
1 ACATACATACATACACACAT
98374386 GCATGCATGC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.50, C:0.29, G:0.00, T:0.21
Consensus pattern (22 bp):
ACATACATACATACACACATAT
Found at i:98380435 original size:2 final size:2
Alignment explanation
Indices: 98380423--98380452 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
98380413 CCATCAAATC
*
98380423 TA TA AA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
98380453 ATTTTGGCTT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
TA
Found at i:98381517 original size:18 final size:18
Alignment explanation
Indices: 98381494--98381531 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
98381484 GCAAAGGCTC
98381494 TAACCTCCTTGATTTTTT
1 TAACCTCCTTGATTTTTT
98381512 TAACCTCCTTGATTTTTT
1 TAACCTCCTTGATTTTTT
98381530 TA
1 TA
98381532 TGTACATTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.18, C:0.21, G:0.05, T:0.55
Consensus pattern (18 bp):
TAACCTCCTTGATTTTTT
Found at i:98386994 original size:34 final size:35
Alignment explanation
Indices: 98386951--98387019 Score: 95
Period size: 34 Copynumber: 2.0 Consensus size: 35
98386941 AAATAGACAT
* *
98386951 TTATATTTAATAACATAAAATAATTAATATTTTTA
1 TTATATTTAATAAAATAAAATAATTAATAATTTTA
* *
98386986 TTAT-TTTAATAAAATTAATTAATTAATAATTTTA
1 TTATATTTAATAAAATAAAATAATTAATAATTTTA
98387020 AATTCTAAAC
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
34 26 0.87
35 4 0.13
ACGTcount: A:0.48, C:0.01, G:0.00, T:0.51
Consensus pattern (35 bp):
TTATATTTAATAAAATAAAATAATTAATAATTTTA
Found at i:98387628 original size:3 final size:3
Alignment explanation
Indices: 98387620--98387650 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
98387610 CCTCGAAATT
98387620 CAC CAC CAC CAC CAC CAC CAC CAC CAC CAC C
1 CAC CAC CAC CAC CAC CAC CAC CAC CAC CAC C
98387651 GGAGACGCCG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.32, C:0.68, G:0.00, T:0.00
Consensus pattern (3 bp):
CAC
Found at i:98391063 original size:12 final size:12
Alignment explanation
Indices: 98391046--98391071 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
98391036 TATAGCTTGC
98391046 AATGATGTTTTG
1 AATGATGTTTTG
98391058 AATGATGTTTTG
1 AATGATGTTTTG
98391070 AA
1 AA
98391072 CTTTGGGCAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.31, C:0.00, G:0.23, T:0.46
Consensus pattern (12 bp):
AATGATGTTTTG
Found at i:98395862 original size:4 final size:4
Alignment explanation
Indices: 98395853--98395889 Score: 51
Period size: 4 Copynumber: 9.8 Consensus size: 4
98395843 CAAAAATAAC
*
98395853 CATA CATA CATA CATA CATA CAT- -ATA TATA CATA CAT
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CAT
98395890 TGAATGTATA
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
2 2 0.07
4 28 0.93
ACGTcount: A:0.49, C:0.22, G:0.00, T:0.30
Consensus pattern (4 bp):
CATA
Found at i:98397984 original size:84 final size:84
Alignment explanation
Indices: 98397843--98398006 Score: 319
Period size: 84 Copynumber: 2.0 Consensus size: 84
98397833 GTAGTTAGAA
98397843 GGTAACATGATCCGAAATGTGTTAGGTATAGCCAGTGGCAGATCTTGGGATTATGTTTGGAGGGC
1 GGTAACATGATCCGAAATGTGTTAGGTATAGCCAGTGGCAGATCTTGGGATTATGTTTGGAGGGC
98397908 CTAATTAAAATTTTTGAAG
66 CTAATTAAAATTTTTGAAG
*
98397927 GGTAACATGATCCGAAATGTGTTAGGTATAGCTAGTGGCAGATCTTGGGATTATGTTTGGAGGGC
1 GGTAACATGATCCGAAATGTGTTAGGTATAGCCAGTGGCAGATCTTGGGATTATGTTTGGAGGGC
98397992 CTAATTAAAATTTTT
66 CTAATTAAAATTTTT
98398007 TAAAAATTTA
Statistics
Matches: 79, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
84 79 1.00
ACGTcount: A:0.28, C:0.10, G:0.28, T:0.34
Consensus pattern (84 bp):
GGTAACATGATCCGAAATGTGTTAGGTATAGCCAGTGGCAGATCTTGGGATTATGTTTGGAGGGC
CTAATTAAAATTTTTGAAG
Found at i:98401538 original size:42 final size:42
Alignment explanation
Indices: 98401449--98401539 Score: 101
Period size: 42 Copynumber: 2.2 Consensus size: 42
98401439 TCCTAATTGG
* * * **
98401449 GAAAATAATTCCCTTATTTTAATAAATTACTAAAACATTAGG
1 GAAAATAATTCCCTTATTCTAATAAACTACTAAAACATAAAA
* * *
98401491 GAAAATAGTTCCTTTATTCTAATAAACTACTAAAAGATAAAA
1 GAAAATAATTCCCTTATTCTAATAAACTACTAAAACATAAAA
*
98401533 TAAAATA
1 GAAAATA
98401540 TTTCTAGAAT
Statistics
Matches: 40, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
42 40 1.00
ACGTcount: A:0.49, C:0.11, G:0.07, T:0.33
Consensus pattern (42 bp):
GAAAATAATTCCCTTATTCTAATAAACTACTAAAACATAAAA
Found at i:98401583 original size:19 final size:18
Alignment explanation
Indices: 98401561--98401600 Score: 71
Period size: 19 Copynumber: 2.2 Consensus size: 18
98401551 TTAATAAAAC
98401561 TTATCTACCTAAATAAGAT
1 TTATCTACCTAAATAA-AT
98401580 TTATCTACCTAAATAAAT
1 TTATCTACCTAAATAAAT
98401598 TTA
1 TTA
98401601 AAATATATAC
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 5 0.24
19 16 0.76
ACGTcount: A:0.42, C:0.15, G:0.03, T:0.40
Consensus pattern (18 bp):
TTATCTACCTAAATAAAT
Found at i:98402259 original size:3 final size:3
Alignment explanation
Indices: 98402251--98402289 Score: 51
Period size: 3 Copynumber: 13.0 Consensus size: 3
98402241 CGCAGCAACT
* * *
98402251 GCA GCA GCA GCA ACA ACA CCA GCA GCA GCA GCA GCA GCA
1 GCA GCA GCA GCA GCA GCA GCA GCA GCA GCA GCA GCA GCA
98402290 AAGGCAAAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.38, C:0.36, G:0.26, T:0.00
Consensus pattern (3 bp):
GCA
Found at i:98402262 original size:15 final size:15
Alignment explanation
Indices: 98402242--98402289 Score: 60
Period size: 15 Copynumber: 3.2 Consensus size: 15
98402232 AGCCACAAAC
*
98402242 GCAGCAACTGCAGCA
1 GCAGCAACAGCAGCA
* *
98402257 GCAGCAACAACACCA
1 GCAGCAACAGCAGCA
*
98402272 GCAGCAGCAGCAGCA
1 GCAGCAACAGCAGCA
98402287 GCA
1 GCA
98402290 AAGGCAAAAA
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
15 27 1.00
ACGTcount: A:0.38, C:0.35, G:0.25, T:0.02
Consensus pattern (15 bp):
GCAGCAACAGCAGCA
Found at i:98406142 original size:6 final size:6
Alignment explanation
Indices: 98406131--98406163 Score: 66
Period size: 6 Copynumber: 5.5 Consensus size: 6
98406121 TTCATGCATG
98406131 CATATA CATATA CATATA CATATA CATATA CAT
1 CATATA CATATA CATATA CATATA CATATA CAT
98406164 GTATTGATTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.48, C:0.18, G:0.00, T:0.33
Consensus pattern (6 bp):
CATATA
Found at i:98406895 original size:28 final size:28
Alignment explanation
Indices: 98406854--98406907 Score: 90
Period size: 28 Copynumber: 1.9 Consensus size: 28
98406844 AACGTGCCAT
98406854 TTTTATAACCCATGGGATTATAATAAGG
1 TTTTATAACCCATGGGATTATAATAAGG
* *
98406882 TTTTATCACTCATGGGATTATAATAA
1 TTTTATAACCCATGGGATTATAATAA
98406908 AGATTTATGA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.35, C:0.11, G:0.15, T:0.39
Consensus pattern (28 bp):
TTTTATAACCCATGGGATTATAATAAGG
Found at i:98406914 original size:28 final size:28
Alignment explanation
Indices: 98406855--98406915 Score: 86
Period size: 28 Copynumber: 2.2 Consensus size: 28
98406845 ACGTGCCATT
* *
98406855 TTTATAACCCATGGGATTATAATAAGGT
1 TTTATAACCCATGGGATTATAATAAAGA
* *
98406883 TTTATCACTCATGGGATTATAATAAAGA
1 TTTATAACCCATGGGATTATAATAAAGA
98406911 TTTAT
1 TTTAT
98406916 GATGAATTAT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.36, C:0.10, G:0.15, T:0.39
Consensus pattern (28 bp):
TTTATAACCCATGGGATTATAATAAAGA
Found at i:98419971 original size:11 final size:11
Alignment explanation
Indices: 98419923--98419975 Score: 54
Period size: 11 Copynumber: 4.6 Consensus size: 11
98419913 AAAAATATTT
*
98419923 ATTTTATTTAG
1 ATTTAATTTAG
98419934 ACGTTTAATTTAG
1 A--TTTAATTTAG
*
98419947 -TGTAATTCTAG
1 ATTTAATT-TAG
98419958 ATTTAATTTAG
1 ATTTAATTTAG
98419969 ATTTAAT
1 ATTTAAT
98419976 GTAATTATTG
Statistics
Matches: 35, Mismatches: 3, Indels: 8
0.76 0.07 0.17
Matches are distributed among these distances:
10 6 0.17
11 14 0.40
12 6 0.17
13 9 0.26
ACGTcount: A:0.32, C:0.04, G:0.11, T:0.53
Consensus pattern (11 bp):
ATTTAATTTAG
Found at i:98421802 original size:39 final size:40
Alignment explanation
Indices: 98421736--98421826 Score: 98
Period size: 39 Copynumber: 2.3 Consensus size: 40
98421726 AAATAGGGCT
* *
98421736 TTAGCGGCGTTTGGACAAAAACACCGC-AAAGTTTATAAA
1 TTAGCGGCGTTTGCACAAAAACACCGCAAAAGTTGATAAA
** *
98421775 TTAGCGGCGTTTGCA-AGAAAATGCCGCAAAAAGTTGATTAA
1 TTAGCGGCGTTTGCACA-AAAACACCGC-AAAAGTTGATAAA
98421816 -TAGCGGCGTTT
1 TTAGCGGCGTTT
98421827 TTGGTCCAAA
Statistics
Matches: 44, Mismatches: 5, Indels: 5
0.81 0.09 0.09
Matches are distributed among these distances:
38 1 0.02
39 22 0.50
40 11 0.25
41 10 0.23
ACGTcount: A:0.34, C:0.16, G:0.24, T:0.25
Consensus pattern (40 bp):
TTAGCGGCGTTTGCACAAAAACACCGCAAAAGTTGATAAA
Found at i:98424293 original size:44 final size:44
Alignment explanation
Indices: 98424230--98424314 Score: 152
Period size: 44 Copynumber: 1.9 Consensus size: 44
98424220 TATGGGTTGA
*
98424230 GGAGGGGCTATGGGTAGTTCTAAGTATTATGTTGAAAAGAGCGG
1 GGAGGGGCTATGGGTAGTTCTAAGTATTATATTGAAAAGAGCGG
*
98424274 GGAGGGGCTATGGGTAGTTCTAAGTATTGTATTGAAAAGAG
1 GGAGGGGCTATGGGTAGTTCTAAGTATTATATTGAAAAGAG
98424315 AAAATATGAT
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
44 39 1.00
ACGTcount: A:0.28, C:0.06, G:0.38, T:0.28
Consensus pattern (44 bp):
GGAGGGGCTATGGGTAGTTCTAAGTATTATATTGAAAAGAGCGG
Found at i:98426607 original size:34 final size:34
Alignment explanation
Indices: 98426569--98426636 Score: 136
Period size: 34 Copynumber: 2.0 Consensus size: 34
98426559 AAAAAAAAAG
98426569 ATGAAATCATAAGTTCATACATGATAAAATTACA
1 ATGAAATCATAAGTTCATACATGATAAAATTACA
98426603 ATGAAATCATAAGTTCATACATGATAAAATTACA
1 ATGAAATCATAAGTTCATACATGATAAAATTACA
98426637 CTTTAACCTC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.50, C:0.12, G:0.09, T:0.29
Consensus pattern (34 bp):
ATGAAATCATAAGTTCATACATGATAAAATTACA
Found at i:98431335 original size:21 final size:21
Alignment explanation
Indices: 98431306--98431346 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
98431296 TGGGGGGTCA
*
98431306 ACACGCCCATATGGATGAGGT
1 ACACACCCATATGGATGAGGT
*
98431327 ACACACCCATGTGGATGAGG
1 ACACACCCATATGGATGAGG
98431347 GACATAGCTG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.24, G:0.29, T:0.17
Consensus pattern (21 bp):
ACACACCCATATGGATGAGGT
Found at i:98437439 original size:25 final size:25
Alignment explanation
Indices: 98437371--98437431 Score: 113
Period size: 25 Copynumber: 2.4 Consensus size: 25
98437361 CAATTATACC
*
98437371 AATTTTTAATATTAAAAATTGATGA
1 AATTTTTAATAGTAAAAATTGATGA
98437396 AATTTTTAATAGTAAAAATTGATGA
1 AATTTTTAATAGTAAAAATTGATGA
98437421 AATTTTTAATA
1 AATTTTTAATA
98437432 AAAGAAATCG
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 35 1.00
ACGTcount: A:0.48, C:0.00, G:0.08, T:0.44
Consensus pattern (25 bp):
AATTTTTAATAGTAAAAATTGATGA
Found at i:98438239 original size:24 final size:24
Alignment explanation
Indices: 98438212--98438294 Score: 78
Period size: 24 Copynumber: 3.2 Consensus size: 24
98438202 AGTGACGTAC
98438212 ATGGACTCGTTTTTAACAATAGTA
1 ATGGACTCGTTTTTAACAATAGTA
* *
98438236 ATGGA-TGCAATTTTTAACAGAAAAATTGTA
1 ATGGACT-C-GTTTTTAAC-----AATAGTA
98438266 ATGGACTCGTTTTTAACAATAGTA
1 ATGGACTCGTTTTTAACAATAGTA
98438290 ATGGA
1 ATGGA
98438295 TTTGAGTTAA
Statistics
Matches: 47, Mismatches: 4, Indels: 16
0.70 0.06 0.24
Matches are distributed among these distances:
23 1 0.02
24 17 0.36
25 8 0.17
29 8 0.17
30 12 0.26
31 1 0.02
ACGTcount: A:0.37, C:0.10, G:0.18, T:0.35
Consensus pattern (24 bp):
ATGGACTCGTTTTTAACAATAGTA
Found at i:98444654 original size:25 final size:25
Alignment explanation
Indices: 98444575--98444655 Score: 71
Period size: 25 Copynumber: 3.3 Consensus size: 25
98444565 TGAATTTGAT
*
98444575 ACTTTTTTTCTAATTTGGTACCTAA
1 ACTTTTTTTCTAATTTGGTACTTAA
* * * *
98444600 ACCTTTTTTGT-ATCT-GAACTTGACA
1 ACTTTTTTTCTAATTTGGTACTT-A-A
98444625 A--TTTTTTCTAATTTGGTACTTAA
1 ACTTTTTTTCTAATTTGGTACTTAA
98444648 ACTTTTTT
1 ACTTTTTT
98444656 GGACCCAATT
Statistics
Matches: 42, Mismatches: 8, Indels: 12
0.68 0.13 0.19
Matches are distributed among these distances:
23 13 0.31
24 8 0.19
25 21 0.50
ACGTcount: A:0.23, C:0.15, G:0.09, T:0.53
Consensus pattern (25 bp):
ACTTTTTTTCTAATTTGGTACTTAA
Found at i:98444945 original size:4 final size:4
Alignment explanation
Indices: 98444936--98444969 Score: 68
Period size: 4 Copynumber: 8.5 Consensus size: 4
98444926 ATTTTCAATG
98444936 AATT AATT AATT AATT AATT AATT AATT AATT AA
1 AATT AATT AATT AATT AATT AATT AATT AATT AA
98444970 AAGTAAAAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 30 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (4 bp):
AATT
Found at i:98449213 original size:20 final size:19
Alignment explanation
Indices: 98449167--98449213 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 19
98449157 ACAGTTAAAT
*
98449167 TAATTTTTTTTATTTTTAA
1 TAATTTTTTTGATTTTTAA
98449186 -AATATTTTTATGATTTTTAA
1 TAAT-TTTTT-TGATTTTTAA
98449206 TAATTTTT
1 TAATTTTT
98449214 ACGTGGTTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
18 3 0.12
19 5 0.21
20 13 0.54
21 3 0.12
ACGTcount: A:0.30, C:0.00, G:0.02, T:0.68
Consensus pattern (19 bp):
TAATTTTTTTGATTTTTAA
Found at i:98452295 original size:27 final size:28
Alignment explanation
Indices: 98452255--98452308 Score: 92
Period size: 27 Copynumber: 2.0 Consensus size: 28
98452245 TGTCCTCTCT
98452255 ACTAGAAAACGAGCAAATTAATCTTTAC
1 ACTAGAAAACGAGCAAATTAATCTTTAC
*
98452283 ACTA-AAAATGAGCAAATTAATCTTTA
1 ACTAGAAAACGAGCAAATTAATCTTTA
98452309 TACGTTAGAT
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
27 21 0.84
28 4 0.16
ACGTcount: A:0.48, C:0.15, G:0.09, T:0.28
Consensus pattern (28 bp):
ACTAGAAAACGAGCAAATTAATCTTTAC
Found at i:98454682 original size:20 final size:20
Alignment explanation
Indices: 98454657--98454694 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
98454647 TACTTCTCCA
* *
98454657 TCCTTTTCTCTTCTCCTCAT
1 TCCTTTTCCCTTATCCTCAT
98454677 TCCTTTTCCCTTATCCTC
1 TCCTTTTCCCTTATCCTC
98454695 TTTTTTGCTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.05, C:0.42, G:0.00, T:0.53
Consensus pattern (20 bp):
TCCTTTTCCCTTATCCTCAT
Found at i:98468303 original size:22 final size:24
Alignment explanation
Indices: 98468264--98468318 Score: 69
Period size: 22 Copynumber: 2.4 Consensus size: 24
98468254 GGTTTAGTGT
98468264 AAAAAATTATGTATTAATAATATA
1 AAAAAATTATGTATTAATAATATA
* *
98468288 AAAAAATTAT-TA-TAATATTATT
1 AAAAAATTATGTATTAATAATATA
*
98468310 AAATAATTA
1 AAAAAATTA
98468319 AAAACAAATC
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
22 16 0.57
23 2 0.07
24 10 0.36
ACGTcount: A:0.58, C:0.00, G:0.02, T:0.40
Consensus pattern (24 bp):
AAAAAATTATGTATTAATAATATA
Found at i:98471963 original size:19 final size:20
Alignment explanation
Indices: 98471919--98471970 Score: 79
Period size: 20 Copynumber: 2.6 Consensus size: 20
98471909 AAATTAGAAA
*
98471919 AAAAATTCAAAATATTTTTC
1 AAAAATTCAAAATATTTATC
98471939 AAAAATTCAAAATATTTAT-
1 AAAAATTCAAAATATTTATC
98471958 AAAAATTCCAAAA
1 AAAAATT-CAAAA
98471971 ATTATATTTT
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
19 7 0.23
20 23 0.77
ACGTcount: A:0.58, C:0.10, G:0.00, T:0.33
Consensus pattern (20 bp):
AAAAATTCAAAATATTTATC
Found at i:98473295 original size:29 final size:29
Alignment explanation
Indices: 98473262--98473318 Score: 105
Period size: 29 Copynumber: 2.0 Consensus size: 29
98473252 ATTATTTAAG
98473262 TTAGAAAAATTGTGAAGCAATGAAATGAT
1 TTAGAAAAATTGTGAAGCAATGAAATGAT
*
98473291 TTAGAAACATTGTGAAGCAATGAAATGA
1 TTAGAAAAATTGTGAAGCAATGAAATGA
98473319 AATTACTTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.47, C:0.05, G:0.21, T:0.26
Consensus pattern (29 bp):
TTAGAAAAATTGTGAAGCAATGAAATGAT
Found at i:98478981 original size:19 final size:19
Alignment explanation
Indices: 98478959--98479012 Score: 54
Period size: 23 Copynumber: 2.6 Consensus size: 19
98478949 TATTTTTATG
98478959 ATTTAAAAATAAATATTTT
1 ATTTAAAAATAAATATTTT
98478978 ATTTATAAAAAAATAAATATTTT
1 A-TT-T--AAAAATAAATATTTT
*
98479001 ATATTTAAAATA
1 AT-TTAAAAATA
98479013 TTGAAAATAA
Statistics
Matches: 29, Mismatches: 1, Indels: 9
0.74 0.03 0.23
Matches are distributed among these distances:
19 1 0.03
20 8 0.28
21 1 0.03
22 2 0.07
23 17 0.59
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (19 bp):
ATTTAAAAATAAATATTTT
Found at i:98478989 original size:23 final size:23
Alignment explanation
Indices: 98478963--98479010 Score: 80
Period size: 23 Copynumber: 2.1 Consensus size: 23
98478953 TTTATGATTT
98478963 AAAAATAAATATTTTAT-TTATAA
1 AAAAATAAATATTTTATATT-TAA
98478986 AAAAATAAATATTTTATATTTAA
1 AAAAATAAATATTTTATATTTAA
98479009 AA
1 AA
98479011 TATTGAAAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
23 22 0.92
24 2 0.08
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (23 bp):
AAAAATAAATATTTTATATTTAA
Found at i:98479113 original size:16 final size:16
Alignment explanation
Indices: 98479088--98479121 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
98479078 AATTTTTATT
98479088 TATTTGAAAATATATA
1 TATTTGAAAATATATA
* *
98479104 TATTTTAAAATATTTA
1 TATTTGAAAATATATA
98479120 TA
1 TA
98479122 AAAAAATTTA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (16 bp):
TATTTGAAAATATATA
Found at i:98479210 original size:14 final size:15
Alignment explanation
Indices: 98479191--98479231 Score: 50
Period size: 14 Copynumber: 2.9 Consensus size: 15
98479181 AAATAAGTTC
98479191 AAAAATCCAAAAT-A
1 AAAAATCCAAAATGA
*
98479205 AAAAAT-CAATATGA
1 AAAAATCCAAAATGA
*
98479219 AAAAATCGAAAAT
1 AAAAATCCAAAAT
98479232 TAAATCCAAC
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
13 5 0.23
14 13 0.59
15 4 0.18
ACGTcount: A:0.68, C:0.10, G:0.05, T:0.17
Consensus pattern (15 bp):
AAAAATCCAAAATGA
Found at i:98486189 original size:56 final size:56
Alignment explanation
Indices: 98486129--98486304 Score: 219
Period size: 56 Copynumber: 3.1 Consensus size: 56
98486119 AGTTCATACT
* * *
98486129 TCAATATGAGAACAATTGTCAAGTTCAGGGACTAACTTAAAAAAAAAGTTCATGCC
1 TCAATATGAGAACAATTGCCAAGTTTAGGGACTAACTTAAAAAAAAAGTTCAAGCC
* *
98486185 TCAATATGAGAACAATTGCCAAGTTTAGGGGCTAACTTGAAATAAAAA-TTCAAGCC
1 TCAATATGAGAACAATTGCCAAGTTTAGGGACTAACTT-AAAAAAAAAGTTCAAGCC
* * * * *
98486241 CCAATGTGGGAACAATTGCCAAGTTTAAGGACTAACTTAGACAAAGAAAAGTCCAAGCC
1 TCAATATGAGAACAATTGCCAAGTTTAGGGACTAACTTA-A-AAA-AAAAGTTCAAGCC
98486300 TCAAT
1 TCAAT
98486305 GTGAAAAAAG
Statistics
Matches: 102, Mismatches: 13, Indels: 7
0.84 0.11 0.06
Matches are distributed among these distances:
55 1 0.01
56 76 0.75
57 10 0.10
58 4 0.04
59 11 0.11
ACGTcount: A:0.41, C:0.18, G:0.18, T:0.23
Consensus pattern (56 bp):
TCAATATGAGAACAATTGCCAAGTTTAGGGACTAACTTAAAAAAAAAGTTCAAGCC
Found at i:98487142 original size:17 final size:17
Alignment explanation
Indices: 98487090--98487142 Score: 56
Period size: 17 Copynumber: 3.1 Consensus size: 17
98487080 TTGAATTGAG
98487090 TTTT-ATTATTTTTTAAT
1 TTTTAATTATTTTTT-AT
**
98487107 TTTTAATT-TGTTTGAAT
1 TTTTAATTAT-TTTTTAT
98487124 TTTTAATTATTTTTTAT
1 TTTTAATTATTTTTTAT
98487141 TT
1 TT
98487143 AAACCAATCG
Statistics
Matches: 29, Mismatches: 4, Indels: 6
0.74 0.10 0.15
Matches are distributed among these distances:
17 22 0.76
18 7 0.24
ACGTcount: A:0.23, C:0.00, G:0.04, T:0.74
Consensus pattern (17 bp):
TTTTAATTATTTTTTAT
Found at i:98487964 original size:14 final size:14
Alignment explanation
Indices: 98487945--98487971 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
98487935 ATTAAAAGTT
98487945 TATAAATTTTTATA
1 TATAAATTTTTATA
98487959 TATAAATTTTTAT
1 TATAAATTTTTAT
98487972 TTGGAGTTAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (14 bp):
TATAAATTTTTATA
Found at i:98493390 original size:45 final size:45
Alignment explanation
Indices: 98493323--98493412 Score: 171
Period size: 45 Copynumber: 2.0 Consensus size: 45
98493313 ATTCCCCCCA
*
98493323 CAATAAGCCTTAGATATCATCTACTCCACTGCAACAAAAGTTATG
1 CAATAAGCCTTAGATATAATCTACTCCACTGCAACAAAAGTTATG
98493368 CAATAAGCCTTAGATATAATCTACTCCACTGCAACAAAAGTTATG
1 CAATAAGCCTTAGATATAATCTACTCCACTGCAACAAAAGTTATG
98493413 GAAAGTGACC
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 44 1.00
ACGTcount: A:0.39, C:0.23, G:0.11, T:0.27
Consensus pattern (45 bp):
CAATAAGCCTTAGATATAATCTACTCCACTGCAACAAAAGTTATG
Found at i:98497634 original size:3 final size:3
Alignment explanation
Indices: 98497626--98497653 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
98497616 TCAAAACGAC
98497626 AAG AAG AAG AAG AAG AAG AAG AAG AAG A
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG A
98497654 TGATGATGAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:98503137 original size:2 final size:2
Alignment explanation
Indices: 98503130--98503165 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
98503120 TGTAACATGC
98503130 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
98503166 GTATGCGTTA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Done.