Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr02 99090824
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 99090824
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 317 characters in sequence are not A, C, G, or T
File 32 of 318
Found at i:8629188 original size:45 final size:45
Alignment explanation
Indices: 8629138--8629228 Score: 182
Period size: 45 Copynumber: 2.0 Consensus size: 45
8629128 GGAACAAAAA
8629138 TGAAGTTTTGGGGCCGATTTAAAAAGAAATATGAAATAGGGGACC
1 TGAAGTTTTGGGGCCGATTTAAAAAGAAATATGAAATAGGGGACC
8629183 TGAAGTTTTGGGGCCGATTTAAAAAGAAATATGAAATAGGGGACC
1 TGAAGTTTTGGGGCCGATTTAAAAAGAAATATGAAATAGGGGACC
8629228 T
1 T
8629229 ATTTGAACAC
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 46 1.00
ACGTcount: A:0.37, C:0.09, G:0.29, T:0.25
Consensus pattern (45 bp):
TGAAGTTTTGGGGCCGATTTAAAAAGAAATATGAAATAGGGGACC
Found at i:8632841 original size:36 final size:36
Alignment explanation
Indices: 8632794--8632867 Score: 148
Period size: 36 Copynumber: 2.1 Consensus size: 36
8632784 ACATGTCCCT
8632794 ATATGTTTGAACAAAATGGTGTGGTAGAAAGAAAAC
1 ATATGTTTGAACAAAATGGTGTGGTAGAAAGAAAAC
8632830 ATATGTTTGAACAAAATGGTGTGGTAGAAAGAAAAC
1 ATATGTTTGAACAAAATGGTGTGGTAGAAAGAAAAC
8632866 AT
1 AT
8632868 CACCATATTG
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 38 1.00
ACGTcount: A:0.45, C:0.05, G:0.24, T:0.26
Consensus pattern (36 bp):
ATATGTTTGAACAAAATGGTGTGGTAGAAAGAAAAC
Found at i:8635210 original size:40 final size:40
Alignment explanation
Indices: 8635149--8635375 Score: 301
Period size: 40 Copynumber: 5.7 Consensus size: 40
8635139 CAATTGAAGA
* *
8635149 TTATATCCGGGTTAAGCCCCGAAGGCATTCGTGCTGGTTG
1 TTATTTCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
* *
8635189 CTATTTCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTT
1 TTATTTCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
*
8635229 TTATTTCCGGGTTAAGTCCCGAAGGCATTCGTGTTGGTTG
1 TTATTTCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
* * * *
8635269 TTATTTTCGGGTTAAGGCCCGAAAGCATTCGTGCTGGTCG
1 TTATTTCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
* ** *
8635309 CTATTTTTGGGTTAAGTCCCGAAGGCATTTGTGCTGGTTG
1 TTATTTCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
** * *
8635349 TTACATCCGGGCTAAATCCCGAAGGCA
1 TTATTTCCGGGTTAAGTCCCGAAGGCA
8635376 ATTGGGTTGG
Statistics
Matches: 162, Mismatches: 25, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 162 1.00
ACGTcount: A:0.18, C:0.21, G:0.29, T:0.33
Consensus pattern (40 bp):
TTATTTCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
Found at i:8635369 original size:120 final size:120
Alignment explanation
Indices: 8635156--8635375 Score: 341
Period size: 120 Copynumber: 1.8 Consensus size: 120
8635146 AGATTATATC
* *
8635156 CGGGTTAAGCCCCGAAGGCATTCGTGCTGGTTGCTATTTCCGGGTTAAGTCCCGAAGGCATTCGT
1 CGGGTTAAGCCCCGAAAGCATTCGTGCTGGTCGCTATTTCCGGGTTAAGTCCCGAAGGCATTCGT
* ** * *
8635221 GCTGGTTTTTATTTCCGGGTTAAGTCCCGAAGGCATTCGTGTTGGTTGTTATTTT
66 GCTGGTTGTTACATCCGGGCTAAATCCCGAAGGCATTCGTGTTGGTTGTTATTTT
* ** *
8635276 CGGGTTAAGGCCCGAAAGCATTCGTGCTGGTCGCTATTTTTGGGTTAAGTCCCGAAGGCATTTGT
1 CGGGTTAAGCCCCGAAAGCATTCGTGCTGGTCGCTATTTCCGGGTTAAGTCCCGAAGGCATTCGT
8635341 GCTGGTTGTTACATCCGGGCTAAATCCCGAAGGCA
66 GCTGGTTGTTACATCCGGGCTAAATCCCGAAGGCA
8635376 ATTGGGTTGG
Statistics
Matches: 89, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
120 89 1.00
ACGTcount: A:0.17, C:0.21, G:0.30, T:0.32
Consensus pattern (120 bp):
CGGGTTAAGCCCCGAAAGCATTCGTGCTGGTCGCTATTTCCGGGTTAAGTCCCGAAGGCATTCGT
GCTGGTTGTTACATCCGGGCTAAATCCCGAAGGCATTCGTGTTGGTTGTTATTTT
Found at i:8639255 original size:9 final size:9
Alignment explanation
Indices: 8639241--8639266 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
8639231 AACATGTATC
8639241 AATTATAAT
1 AATTATAAT
8639250 AATTATAAT
1 AATTATAAT
8639259 AATTATAA
1 AATTATAA
8639267 AAGATATTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (9 bp):
AATTATAAT
Found at i:8649563 original size:13 final size:13
Alignment explanation
Indices: 8649545--8649571 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
8649535 GCTTGGCAGG
8649545 GACACGCCCGTGT
1 GACACGCCCGTGT
8649558 GACACGCCCGTGT
1 GACACGCCCGTGT
8649571 G
1 G
8649572 CTATTACTTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.37, G:0.33, T:0.15
Consensus pattern (13 bp):
GACACGCCCGTGT
Found at i:8653047 original size:3 final size:3
Alignment explanation
Indices: 8653039--8653092 Score: 108
Period size: 3 Copynumber: 18.0 Consensus size: 3
8653029 TTGAGTCTAT
8653039 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
8653087 TTA TTA
1 TTA TTA
8653093 ATTTCAATCT
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 51 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:8657353 original size:27 final size:27
Alignment explanation
Indices: 8657323--8657413 Score: 121
Period size: 27 Copynumber: 3.4 Consensus size: 27
8657313 ATTACCAAAG
* *
8657323 TACCCTCGATTTATAGAATTATCATTT
1 TACCCTCGATTTACAAAATTATCATTT
* *
8657350 TACCCTTGATTTACAAAATTACCATTT
1 TACCCTCGATTTACAAAATTATCATTT
* *
8657377 TACCCTC-AGTTACAAAATTATCGTTT
1 TACCCTCGATTTACAAAATTATCATTT
8657403 TACCCTCGATT
1 TACCCTCGATT
8657414 GTGAAATTAC
Statistics
Matches: 54, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
26 23 0.43
27 31 0.57
ACGTcount: A:0.30, C:0.23, G:0.07, T:0.41
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTATCATTT
Found at i:8657396 original size:26 final size:26
Alignment explanation
Indices: 8657339--8657409 Score: 97
Period size: 26 Copynumber: 2.7 Consensus size: 26
8657329 CGATTTATAG
* *
8657339 AATTATCATTTTACCCTTGATTTACAA
1 AATTATCATTTTACCC-TCAGTTACAA
*
8657366 AATTACCATTTTACCCTCAGTTACAA
1 AATTATCATTTTACCCTCAGTTACAA
*
8657392 AATTATCGTTTTACCCTC
1 AATTATCATTTTACCCTC
8657410 GATTGTGAAA
Statistics
Matches: 39, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
26 24 0.62
27 15 0.38
ACGTcount: A:0.31, C:0.24, G:0.04, T:0.41
Consensus pattern (26 bp):
AATTATCATTTTACCCTCAGTTACAA
Found at i:8657449 original size:27 final size:27
Alignment explanation
Indices: 8657417--8657513 Score: 88
Period size: 27 Copynumber: 3.6 Consensus size: 27
8657407 CTCGATTGTG
8657417 AAATTACTGAAATACCCAT-GTAGGATA
1 AAATTACTGAAATACCCATAGTAGG-TA
* ** * **
8657444 GAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACTGAAATACCCATAGTAGGTA
* **
8657471 AAATTACTGAAATACCCCTAGTTTGTA
1 AAATTACTGAAATACCCATAGTAGGTA
*
8657498 AAATTACCGAAATACC
1 AAATTACTGAAATACC
8657514 ACTGGTTTGT
Statistics
Matches: 59, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
27 56 0.95
28 3 0.05
ACGTcount: A:0.41, C:0.20, G:0.11, T:0.28
Consensus pattern (27 bp):
AAATTACTGAAATACCCATAGTAGGTA
Found at i:8657480 original size:54 final size:54
Alignment explanation
Indices: 8657412--8657567 Score: 172
Period size: 54 Copynumber: 2.9 Consensus size: 54
8657402 TTACCCTCGA
* *
8657412 TTGTGAAATTACTGAAATACCCAT-GTAGGATAGAATTACCAAAATACCCCTAGT
1 TTGTGAAATTACTGAAATACCCATAGTAGG-TAAAATTACCAAAATACCACTAGT
* * ** * *
8657466 TTGTAAAATTACTGAAATACCCCTAGTTTGTAAAATTACCGAAATACCACTGGT
1 TTGTGAAATTACTGAAATACCCATAGTAGGTAAAATTACCAAAATACCACTAGT
* * **
8657520 TTGTGAAATTACCGAAATACCC-TCAATTTGTAAAATTACCAAAATACC
1 TTGTGAAATTACTGAAATACCCAT-AGTAGGTAAAATTACCAAAATACC
8657568 CTTGATTTAC
Statistics
Matches: 88, Mismatches: 12, Indels: 4
0.85 0.12 0.04
Matches are distributed among these distances:
53 1 0.01
54 84 0.95
55 3 0.03
ACGTcount: A:0.39, C:0.19, G:0.12, T:0.29
Consensus pattern (54 bp):
TTGTGAAATTACTGAAATACCCATAGTAGGTAAAATTACCAAAATACCACTAGT
Found at i:8657521 original size:27 final size:26
Alignment explanation
Indices: 8657445--8657678 Score: 155
Period size: 27 Copynumber: 8.7 Consensus size: 26
8657435 TGTAGGATAG
* *
8657445 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCGAAATA-CCCTGGTTTGTAA
* *
8657472 AATTACTGAAATACCCCTAGTTTGTAA
1 AATTACCGAAATA-CCCTGGTTTGTAA
*
8657499 AATTACCGAAATACCACTGGTTTGTGA
1 AATTACCGAAATACC-CTGGTTTGTAA
**
8657526 AATTACCGAAATACCCTCAATTTGTAA
1 AATTACCGAAATACCCT-GGTTTGTAA
* * **
8657553 AATTACCAAAATACCCTTGATTTACAA
1 AATTACCGAAATACCC-TGGTTTGTAA
** *
8657580 AATTATAGAAATACCCTTGACTTT-TAAA
1 AATTACCGAAATACCC-TG-GTTTGT-AA
** * **
8657608 AATTATAGAAATACCATTGGTTTACAA
1 AATTACCGAAATACC-CTGGTTTGTAA
* *
8657635 AATTACTGAAATACCCTTGGTTTGTAG
1 AATTACCGAAATACCC-TGGTTTGTAA
* * *
8657662 ATTTACCAAAACACCCT
1 AATTACCGAAATACCCT
8657679 TGTAGGATGA
Statistics
Matches: 169, Mismatches: 30, Indels: 17
0.78 0.14 0.08
Matches are distributed among these distances:
26 5 0.03
27 141 0.83
28 23 0.14
ACGTcount: A:0.39, C:0.19, G:0.10, T:0.32
Consensus pattern (26 bp):
AATTACCGAAATACCCTGGTTTGTAA
Found at i:8657582 original size:81 final size:81
Alignment explanation
Indices: 8657445--8657594 Score: 187
Period size: 81 Copynumber: 1.9 Consensus size: 81
8657435 TGTAGGATAG
* ** ** *
8657445 AATTACCAAAATACCCCTAGTTTGTAAAATTACTGAAATACCCCTAGTTTGTAAAATTACCGAAA
1 AATTACCAAAATACCCCTAATTTGTAAAATTACCAAAATACCCCTAGTTTACAAAATTACAGAAA
8657510 TACCACTGGTTTGTGA
66 TACCACTGGTTTGTGA
* * *
8657526 AATTACCGAAATA-CCCTCAATTTGTAAAATTACCAAAATA-CCCTTGATTTACAAAATTATAGA
1 AATTACCAAAATACCCCT-AATTTGTAAAATTACCAAAATACCCCTAG-TTTACAAAATTACAGA
8657589 AATACC
64 AATACC
8657595 CTTGACTTTT
Statistics
Matches: 58, Mismatches: 9, Indels: 4
0.82 0.13 0.06
Matches are distributed among these distances:
80 9 0.16
81 49 0.84
ACGTcount: A:0.41, C:0.20, G:0.09, T:0.30
Consensus pattern (81 bp):
AATTACCAAAATACCCCTAATTTGTAAAATTACCAAAATACCCCTAGTTTACAAAATTACAGAAA
TACCACTGGTTTGTGA
Found at i:8657583 original size:54 final size:54
Alignment explanation
Indices: 8657445--8657680 Score: 187
Period size: 54 Copynumber: 4.4 Consensus size: 54
8657435 TGTAGGATAG
* **
8657445 AATTACCAAAATACCCCT-AGTTTGTAAAATTACTGAAATACCC-CTAGTTTGTAA
1 AATTACCAAAATACCCTTGA-TTTACAAAATTACTGAAATACCCTC-AGTTTGTAA
* * *** * *
8657499 AATTACCGAAATACCAC-TGGTTTGTGAAATTACCGAAATACCCTCAATTTGTAA
1 AATTACCAAAATACC-CTTGATTTACAAAATTACTGAAATACCCTCAGTTTGTAA
* *
8657553 AATTACCAAAATACCCTTGATTTACAAAATTA-TAGAAATACCCTTGACTTT-TAAA
1 AATTACCAAAATACCCTTGATTTACAAAATTACT-GAAATACCC-TCAGTTTGT-AA
* * * ** *
8657608 AATTA-TAGAAATACCATTGGTTTACAAAATTACTGAAATACCCTTGGTTTGTAG
1 AATTACCA-AAATACCCTTGATTTACAAAATTACTGAAATACCCTCAGTTTGTAA
* *
8657662 ATTTACCAAAACACCCTTG
1 AATTACCAAAATACCCTTG
8657681 TAGGATGAAA
Statistics
Matches: 147, Mismatches: 24, Indels: 22
0.76 0.12 0.11
Matches are distributed among these distances:
53 1 0.01
54 98 0.67
55 47 0.32
56 1 0.01
ACGTcount: A:0.39, C:0.19, G:0.10, T:0.32
Consensus pattern (54 bp):
AATTACCAAAATACCCTTGATTTACAAAATTACTGAAATACCCTCAGTTTGTAA
Found at i:8657649 original size:109 final size:109
Alignment explanation
Indices: 8657445--8657680 Score: 255
Period size: 109 Copynumber: 2.2 Consensus size: 109
8657435 TGTAGGATAG
* ** * *
8657445 AATTACCAAAATACCCCT-AGTTTGTAAAATTACTGAAATACCCCTAGTTTGTAAAATTACCGAA
1 AATTACCAAAATACCCTTGAGTTTACAAAATTACTGAAATACCCCTACTTTGTAAAATTACAGAA
***
8657509 ATACCACTGGTTTGTGAAATTACCGAAATACCCTCAATTTGTAA
66 ATACCACTGGTTTACAAAATTACCGAAATACCCTCAATTTGTAA
* *
8657553 AATTACCAAAATACCCTTGA-TTTACAAAATTA-TAGAAATACCCTTGACTTT-TAAAAATTATA
1 AATTACCAAAATACCCTTGAGTTTACAAAATTACT-GAAATACCCCT-ACTTTGT-AAAATTACA
* * *** *
8657615 GAAATACCATTGGTTTACAAAATTACTGAAATACCCTTGGTTTGTAG
63 GAAATACCACTGGTTTACAAAATTACCGAAATACCCTCAATTTGTAA
* *
8657662 ATTTACCAAAACACCCTTG
1 AATTACCAAAATACCCTTG
8657681 TAGGATGAAA
Statistics
Matches: 106, Mismatches: 18, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
107 1 0.01
108 38 0.36
109 67 0.63
ACGTcount: A:0.39, C:0.19, G:0.10, T:0.32
Consensus pattern (109 bp):
AATTACCAAAATACCCTTGAGTTTACAAAATTACTGAAATACCCCTACTTTGTAAAATTACAGAA
ATACCACTGGTTTACAAAATTACCGAAATACCCTCAATTTGTAA
Found at i:8658665 original size:24 final size:23
Alignment explanation
Indices: 8658584--8658679 Score: 68
Period size: 25 Copynumber: 4.0 Consensus size: 23
8658574 AGGAAGTGCT
* *
8658584 AAAAGGGCTCTG-CCCAGTTTACC
1 AAAAGGGCTTTGCCCCAG-TTATC
8658607 GAAAAGGGCTTTGCCCCAGTTTATC
1 -AAAAGGGCTTTGCCCCAG-TTATC
** *
8658632 AGATTGGGCTTTGCCCCAGTTATT
1 A-AAAGGGCTTTGCCCCAGTTATC
**
8658656 AAAAGAGGCTAGGCCTCCAGTTAT
1 AAAAG-GGCTTTGCC-CCAGTTAT
8658680 ATGATAAAGC
Statistics
Matches: 59, Mismatches: 9, Indels: 7
0.79 0.12 0.09
Matches are distributed among these distances:
23 2 0.03
24 24 0.41
25 33 0.56
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.27
Consensus pattern (23 bp):
AAAAGGGCTTTGCCCCAGTTATC
Found at i:8658859 original size:42 final size:42
Alignment explanation
Indices: 8658800--8658893 Score: 170
Period size: 42 Copynumber: 2.2 Consensus size: 42
8658790 TAGTCTCTCC
*
8658800 AAATGGGCCTGCATACATTCATTGACATTACATGTGATATTG
1 AAATGGGCCTGCATACATCCATTGACATTACATGTGATATTG
*
8658842 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
1 AAATGGGCCTGCATACATCCATTGACATTACATGTGATATTG
8658884 AAATGGGCCT
1 AAATGGGCCT
8658894 AAGGGCCATA
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
42 49 1.00
ACGTcount: A:0.31, C:0.17, G:0.20, T:0.32
Consensus pattern (42 bp):
AAATGGGCCTGCATACATCCATTGACATTACATGTGATATTG
Found at i:8660616 original size:25 final size:25
Alignment explanation
Indices: 8660588--8660635 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
8660578 TCCGATGGTT
* * *
8660588 GTCTTCGAGTGTTTTCTGTCTTCGA
1 GTCTTCAAGTGATTTCTGCCTTCGA
*
8660613 GTCTTTAAGTGATTTCTGCCTTC
1 GTCTTCAAGTGATTTCTGCCTTC
8660636 TACTCTCTAT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.10, C:0.21, G:0.21, T:0.48
Consensus pattern (25 bp):
GTCTTCAAGTGATTTCTGCCTTCGA
Found at i:8662526 original size:18 final size:18
Alignment explanation
Indices: 8662505--8662564 Score: 57
Period size: 18 Copynumber: 3.3 Consensus size: 18
8662495 CAAAATAGAC
* *
8662505 ATAACAAGAAGAATAAAA
1 ATAAAAAGAAAAATAAAA
*
8662523 ATAAAAATAAAAATAAAA
1 ATAAAAAGAAAAATAAAA
* * *
8662541 ATAAGAATAAAAGATATAA
1 ATAAAAAGAAAA-ATAAAA
8662560 ATAAA
1 ATAAA
8662565 CATTAACATA
Statistics
Matches: 35, Mismatches: 6, Indels: 1
0.83 0.14 0.02
Matches are distributed among these distances:
18 26 0.74
19 9 0.26
ACGTcount: A:0.75, C:0.02, G:0.07, T:0.17
Consensus pattern (18 bp):
ATAAAAAGAAAAATAAAA
Found at i:8662527 original size:6 final size:6
Alignment explanation
Indices: 8662516--8662593 Score: 75
Period size: 6 Copynumber: 12.8 Consensus size: 6
8662506 TAACAAGAAG
* *
8662516 AATAAA AATAAA AATAAA AATAAA AATAAG AATAAA AGATATA AATAAA
1 AATAAA AATAAA AATAAA AATAAA AATAAA AATAAA A-ATAAA AATAAA
* * * * * *
8662565 CATTAA CATAAA CATAAA CATAGA AATAA
1 AATAAA AATAAA AATAAA AATAAA AATAA
8662594 TCAGACTCAA
Statistics
Matches: 61, Mismatches: 10, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
6 56 0.92
7 5 0.08
ACGTcount: A:0.72, C:0.05, G:0.04, T:0.19
Consensus pattern (6 bp):
AATAAA
Found at i:8664550 original size:31 final size:31
Alignment explanation
Indices: 8664512--8664590 Score: 149
Period size: 31 Copynumber: 2.5 Consensus size: 31
8664502 TTTAACGGTT
8664512 ACTGGGCCGAAGCCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
*
8664543 ACTGGGCCGAAGCCTTATCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
8664574 ACTGGGCCGAAGCCTTT
1 ACTGGGCCGAAGCCTTT
8664591 ACTGTAAACG
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 46 1.00
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.27
Consensus pattern (31 bp):
ACTGGGCCGAAGCCTTTTCATAAATCATATC
Found at i:8664859 original size:25 final size:25
Alignment explanation
Indices: 8664809--8664902 Score: 127
Period size: 25 Copynumber: 3.8 Consensus size: 25
8664799 CTCTTTTAAT
* *
8664809 AACTGGGGCAAAG-TCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTTGGTA
*
8664833 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTTGGTA
* *
8664858 AACAGAGGCAAAGCCCTTTTTGGTA
1 AACTGGGGCAAAGCCCTTTTTGGTA
*
8664883 AACTGGGGCATAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
8664903 AGCACTTCCT
Statistics
Matches: 60, Mismatches: 9, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
24 13 0.22
25 47 0.78
ACGTcount: A:0.27, C:0.20, G:0.26, T:0.28
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTTGGTA
Found at i:8665930 original size:27 final size:27
Alignment explanation
Indices: 8665890--8666122 Score: 231
Period size: 27 Copynumber: 8.7 Consensus size: 27
8665880 AGAAAGTCAA
** *
8665890 GGGTATTTCT-GTAATTTTGTAAATCAG
1 GGGTATTT-TGGTAATTTTACAAACCAG
**
8665917 GGGTATTTTGGTAATTTTACAAA-TTG
1 GGGTATTTTGGTAATTTTACAAACCAG
* *
8665943 AGGGTATTTCGGTAATTTCACAAACCAG
1 -GGGTATTTTGGTAATTTTACAAACCAG
* *
8665971 TGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACCAG
8665998 GGGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
* * * *
8666025 AGGTATTTTAGCAATTTTACAGACCA-
1 GGGTATTTTGGTAATTTTACAAACCAG
** *
8666051 GGGTATTTTGGTAATTTTACTGATC-G
1 GGGTATTTTGGTAATTTTACAAACCAG
** *
8666077 AGGGTATTTTGGTAATTTTGTAAACCAA
1 -GGGTATTTTGGTAATTTTACAAACCAG
*
8666105 GGGTATTTTAGTAATTTT
1 GGGTATTTTGGTAATTTT
8666123 GTAAATCGAG
Statistics
Matches: 170, Mismatches: 30, Indels: 12
0.80 0.14 0.06
Matches are distributed among these distances:
26 22 0.13
27 147 0.86
28 1 0.01
ACGTcount: A:0.28, C:0.09, G:0.21, T:0.41
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACCAG
Found at i:8666102 original size:80 final size:81
Alignment explanation
Indices: 8665915--8666122 Score: 251
Period size: 80 Copynumber: 2.6 Consensus size: 81
8665905 TTTGTAAATC
*** ** * *
8665915 AGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACCAGTGGTATTTT
1 AGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGCAATTTTACAAACCAGTGGTATTTT
*
8665980 GGTAATTTTACAAACT
66 GGTAATTTTACAAACG
*
8665996 AGGGGTATTTTGGTAATTTTACAAACC-AGAGGTATTTTAGCAATTTTACAGACCAG-GGTATTT
1 AGGGGTATTTTGGTAATTTTACAAACCAAG-GGTATTTTAGCAATTTTACAAACCAGTGGTATTT
* *
8666059 TGGTAATTTTACTGATCG
65 TGGTAATTTTAC-AAACG
** *
8666077 A-GGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTAGTAATTTT
1 AGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGCAATTTT
8666123 GTAAATCGAG
Statistics
Matches: 111, Mismatches: 13, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
80 60 0.54
81 51 0.46
ACGTcount: A:0.29, C:0.09, G:0.22, T:0.40
Consensus pattern (81 bp):
AGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGCAATTTTACAAACCAGTGGTATTTT
GGTAATTTTACAAACG
Found at i:8666123 original size:27 final size:27
Alignment explanation
Indices: 8665804--8666136 Score: 219
Period size: 27 Copynumber: 12.3 Consensus size: 27
8665794 TTTCATCCTA
* * * *
8665804 CAAGGGTGTTTTGGTAAATCTACAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
* ** *
8665831 CAAAGGTATTTCAGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
* * * *
8665858 CAATGGTATTTCT-ATAATTTTTAGAAAGT
1 CAAGGGTATTT-TGGTAA-TTTTATAAA-C
* *
8665887 CAAGGGTATTTCT-GTAATTTTGTAAAT
1 CAAGGGTATTT-TGGTAATTTTATAAAC
* * *
8665914 CAGGGGTATTTTGGTAATTTTACAAAT
1 CAAGGGTATTTTGGTAATTTTATAAAC
** * * *
8665941 TGAGGGTATTTCGGTAATTTCACAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
*
8665968 C-AGTGGTATTTTGGTAATTTTACAAAC
1 CAAG-GGTATTTTGGTAATTTTATAAAC
* * *
8665995 TAGGGGTATTTTGGTAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
* * * *
8666022 C-AGAGGTATTTTAGCAATTTTACAGAC
1 CAAG-GGTATTTTGGTAATTTTATAAAC
* *
8666049 C-AGGGTATTTTGGTAATTTTACT-GAT
1 CAAGGGTATTTTGGTAATTTTA-TAAAC
* *
8666075 CGAGGGTATTTTGGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
* * *
8666102 CAAGGGTATTTTAGTAATTTTGTAAAT
1 CAAGGGTATTTTGGTAATTTTATAAAC
*
8666129 CGAGGGTA
1 CAAGGGTA
8666137 AAACAGTAAT
Statistics
Matches: 248, Mismatches: 48, Indels: 20
0.78 0.15 0.06
Matches are distributed among these distances:
26 24 0.10
27 194 0.78
28 15 0.06
29 15 0.06
ACGTcount: A:0.31, C:0.10, G:0.21, T:0.39
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTATAAAC
Found at i:8666131 original size:54 final size:54
Alignment explanation
Indices: 8665806--8666136 Score: 246
Period size: 54 Copynumber: 6.1 Consensus size: 54
8665796 TCATCCTACA
* * * * **
8665806 AGGGTGTTTTGGTAAATCTACAAACCAAAGGTATTTCAGTAATTTTGTAAA-CC
1 AGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTGTAAATCC
* * * *
8665859 AATGGTATTTCT-ATAATTTTTAGAAAGTCAAGGGTATTTCT-GTAATTTTGTAAAT-C
1 -AGGGTATTT-TGGTAA-TTTTACAAA-CCAAGGGTATTT-TGGTAATTTTGTAAATCC
*** * ***
8665915 AGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAA-CC
1 A-GGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTGTAAATCC
* * **
8665969 AGTGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAA-CC
1 AG-GGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTGTAAATCC
* * * * * *
8666023 AGAGGTATTTTAGCAATTTTACAGACC-AGGGTATTTTGGTAATTTTACT-GATCG
1 AG-GGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTT-GTAAATCC
** * *
8666077 AGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTAGTAATTTTGTAAATCG
1 AGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTGTAAATCC
8666131 AGGGTA
1 AGGGTA
8666137 AAACAGTAAT
Statistics
Matches: 222, Mismatches: 41, Indels: 28
0.76 0.14 0.10
Matches are distributed among these distances:
53 40 0.18
54 131 0.59
55 17 0.08
56 34 0.15
ACGTcount: A:0.31, C:0.09, G:0.21, T:0.39
Consensus pattern (54 bp):
AGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTGTAAATCC
Found at i:8666144 original size:27 final size:27
Alignment explanation
Indices: 8666114--8666243 Score: 172
Period size: 27 Copynumber: 4.9 Consensus size: 27
8666104 AGGGTATTTT
*
8666114 AGTAATTTTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* * *
8666141 AGTAATTCTGTAAATCAATGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
8666168 AGTAATTCTATAAATCGAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
8666195 GGTAATTCTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
8666222 GGTAATTATGTAAATCG-GGGTA
1 AGTAATTCTGTAAATCGAGGGTA
8666244 CTTTGGTAAT
Statistics
Matches: 92, Mismatches: 11, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
26 5 0.05
27 87 0.95
ACGTcount: A:0.40, C:0.08, G:0.22, T:0.30
Consensus pattern (27 bp):
AGTAATTCTGTAAATCGAGGGTAAAAC
Found at i:8666146 original size:54 final size:54
Alignment explanation
Indices: 8666088--8666243 Score: 170
Period size: 54 Copynumber: 2.9 Consensus size: 54
8666078 GGGTATTTTG
* * *** * *
8666088 GTAATTTTGTAAACCAAGGGTATTTTAGTAATTTTGTAAATCGAGGGTAAAACA
1 GTAATTCTGTAAATCAAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACA
* **
8666142 GTAATTCTGTAAATCAATGGTAAAATAGTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTGTAAATCAAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACA
* ** * *
8666196 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTATGTAAATCG-GGGTA
1 GTAATTCTGTAAATCAAGGGTAAAATAGTAATTCTATAAATCGAGGGTA
8666244 CTTTGGTAAT
Statistics
Matches: 86, Mismatches: 16, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
53 5 0.06
54 81 0.94
ACGTcount: A:0.38, C:0.08, G:0.22, T:0.32
Consensus pattern (54 bp):
GTAATTCTGTAAATCAAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACA
Found at i:8671387 original size:25 final size:24
Alignment explanation
Indices: 8671355--8671412 Score: 64
Period size: 25 Copynumber: 2.4 Consensus size: 24
8671345 TGCCGGAAGC
* * *
8671355 AAATAAAAGAA-AAATTAGTAATTA
1 AAATAAAAAAATAAATT-GCAATAA
8671379 AAATAAAAAAATTAAATTGCAATAA
1 AAATAAAAAAA-TAAATTGCAATAA
8671404 AAATAAAAA
1 AAATAAAAA
8671413 TGGCTAAAGT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
24 10 0.34
25 14 0.48
26 5 0.17
ACGTcount: A:0.71, C:0.02, G:0.05, T:0.22
Consensus pattern (24 bp):
AAATAAAAAAATAAATTGCAATAA
Found at i:8671396 original size:19 final size:20
Alignment explanation
Indices: 8671364--8671406 Score: 52
Period size: 19 Copynumber: 2.1 Consensus size: 20
8671354 CAAATAAAAG
8671364 AAAAATTAGTAATTAAAATAA
1 AAAAATTAG-AATTAAAATAA
**
8671385 AAAAATTA-AATTGCAATAA
1 AAAAATTAGAATTAAAATAA
8671404 AAA
1 AAA
8671407 TAAAAATGGC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 12 0.60
21 8 0.40
ACGTcount: A:0.67, C:0.02, G:0.05, T:0.26
Consensus pattern (20 bp):
AAAAATTAGAATTAAAATAA
Found at i:8674877 original size:38 final size:38
Alignment explanation
Indices: 8674835--8674908 Score: 139
Period size: 38 Copynumber: 1.9 Consensus size: 38
8674825 CAAAGTAAGC
8674835 TATAAAGCTTAGTAAGTTCGCTAGCATTTAAATCAAGT
1 TATAAAGCTTAGTAAGTTCGCTAGCATTTAAATCAAGT
*
8674873 TATAAAGTTTAGTAAGTTCGCTAGCATTTAAATCAA
1 TATAAAGCTTAGTAAGTTCGCTAGCATTTAAATCAA
8674909 CTCATCATAT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 35 1.00
ACGTcount: A:0.38, C:0.12, G:0.15, T:0.35
Consensus pattern (38 bp):
TATAAAGCTTAGTAAGTTCGCTAGCATTTAAATCAAGT
Found at i:8686230 original size:29 final size:29
Alignment explanation
Indices: 8686161--8686276 Score: 130
Period size: 29 Copynumber: 4.1 Consensus size: 29
8686151 ACCCCTACAT
*
8686161 ACATACATATGGCCCACTT-GGCCC--ATC
1 ACATTCATATGGCCCA-TTAGGCCCAAATC
* * *
8686188 TCATTCATATGGCCCATCAGGCCCAATTC
1 ACATTCATATGGCCCATTAGGCCCAAATC
*
8686217 ATATTCATATGGCCCATTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
* * *
8686246 ACCTTTATATGGCCCGTTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
8686275 AC
1 AC
8686277 CATATATTCA
Statistics
Matches: 74, Mismatches: 12, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
26 1 0.01
27 19 0.26
29 54 0.73
ACGTcount: A:0.27, C:0.33, G:0.15, T:0.26
Consensus pattern (29 bp):
ACATTCATATGGCCCATTAGGCCCAAATC
Found at i:8686522 original size:16 final size:16
Alignment explanation
Indices: 8686501--8686539 Score: 69
Period size: 16 Copynumber: 2.4 Consensus size: 16
8686491 AAACTTTCAG
8686501 CTTTTCGATATTTTGA
1 CTTTTCGATATTTTGA
*
8686517 CTTTTCGATATTTTGG
1 CTTTTCGATATTTTGA
8686533 CTTTTCG
1 CTTTTCG
8686540 GCTTTTGCCG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.13, C:0.15, G:0.15, T:0.56
Consensus pattern (16 bp):
CTTTTCGATATTTTGA
Found at i:8690623 original size:16 final size:16
Alignment explanation
Indices: 8690604--8690635 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
8690594 AATTTCAGGA
*
8690604 TTTCGGGATTTTTAGG
1 TTTCGAGATTTTTAGG
8690620 TTTCGAGATTTTTAGG
1 TTTCGAGATTTTTAGG
8690636 GCTTTACAAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.16, C:0.06, G:0.28, T:0.50
Consensus pattern (16 bp):
TTTCGAGATTTTTAGG
Found at i:8693529 original size:27 final size:26
Alignment explanation
Indices: 8693497--8693572 Score: 82
Period size: 29 Copynumber: 2.7 Consensus size: 26
8693487 TACATACATG
8693497 CATATGGCCCACTTGGCCCATCTC-ATT
1 CATATGGCCCA-TTGGCCCAT-TCAATT
*
8693524 CATATGGCCCATCAGGCCCAATTCATATT
1 CATATGGCCCAT-TGGCCC-ATTCA-ATT
8693553 CATATGGCCCATTAGGCCCA
1 CATATGGCCCATT-GGCCCA
8693573 AATCACCTTT
Statistics
Matches: 42, Mismatches: 2, Indels: 9
0.79 0.04 0.17
Matches are distributed among these distances:
26 1 0.02
27 18 0.43
28 3 0.07
29 20 0.48
ACGTcount: A:0.24, C:0.34, G:0.16, T:0.26
Consensus pattern (26 bp):
CATATGGCCCATTGGCCCATTCAATT
Found at i:8693586 original size:29 final size:29
Alignment explanation
Indices: 8693525--8693614 Score: 110
Period size: 29 Copynumber: 3.1 Consensus size: 29
8693515 CATCTCATTC
* * ** *
8693525 ATATGGCCCATCAGGCCCAATTCATATTC
1 ATATGGCCCATTAGGCCCAAATCACCTTT
8693554 ATATGGCCCATTAGGCCCAAATCACCTTT
1 ATATGGCCCATTAGGCCCAAATCACCTTT
* *
8693583 ATATGGACCGTTAGGCCCAAATCACC-TT
1 ATATGGCCCATTAGGCCCAAATCACCTTT
8693611 ATAT
1 ATAT
8693615 TCATGCTTAC
Statistics
Matches: 54, Mismatches: 7, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
28 6 0.11
29 48 0.89
ACGTcount: A:0.29, C:0.29, G:0.14, T:0.28
Consensus pattern (29 bp):
ATATGGCCCATTAGGCCCAAATCACCTTT
Found at i:8693867 original size:16 final size:16
Alignment explanation
Indices: 8693825--8693869 Score: 72
Period size: 16 Copynumber: 2.8 Consensus size: 16
8693815 CGCAGCCAAA
8693825 ATTTTGGCTTTTCAGC
1 ATTTTGGCTTTTCAGC
* *
8693841 ATTTCGACTTTTCAGC
1 ATTTTGGCTTTTCAGC
8693857 ATTTTGGCTTTTC
1 ATTTTGGCTTTTC
8693870 GGCTTTTGTC
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
16 25 1.00
ACGTcount: A:0.13, C:0.20, G:0.16, T:0.51
Consensus pattern (16 bp):
ATTTTGGCTTTTCAGC
Found at i:8696045 original size:17 final size:17
Alignment explanation
Indices: 8696025--8696087 Score: 63
Period size: 17 Copynumber: 3.6 Consensus size: 17
8696015 TAGCACTGCA
*
8696025 AGCTCACCAGAACTATG
1 AGCTCACCAAAACTATG
* *
8696042 AGCTCATCAAAACTACG
1 AGCTCACCAAAACTATG
* * *
8696059 AACTCACCAAAAAATGTG
1 AGCTCACC-AAAACTATG
8696077 AGCTCACCAAA
1 AGCTCACCAAA
8696088 CTTGAGAGCT
Statistics
Matches: 36, Mismatches: 9, Indels: 2
0.77 0.19 0.04
Matches are distributed among these distances:
17 23 0.64
18 13 0.36
ACGTcount: A:0.43, C:0.29, G:0.13, T:0.16
Consensus pattern (17 bp):
AGCTCACCAAAACTATG
Found at i:8697168 original size:18 final size:18
Alignment explanation
Indices: 8697121--8697174 Score: 58
Period size: 17 Copynumber: 3.1 Consensus size: 18
8697111 GAAATTTGAG
* *
8697121 AATAAAAAACAAATAA-A
1 AATAAGAAATAAATAAGA
8697138 AATAAGAAATAAATAAGA
1 AATAAGAAATAAATAAGA
*
8697156 AAT-AGAAATTAAAGAAGA
1 AATAAGAAA-TAAATAAGA
8697174 A
1 A
8697175 TAAAGTGGAA
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
17 19 0.59
18 13 0.41
ACGTcount: A:0.74, C:0.02, G:0.09, T:0.15
Consensus pattern (18 bp):
AATAAGAAATAAATAAGA
Found at i:8697328 original size:30 final size:31
Alignment explanation
Indices: 8697294--8697363 Score: 101
Period size: 30 Copynumber: 2.4 Consensus size: 31
8697284 TAAACCCTCG
* *
8697294 AAGAAAT-AGTCCTTGGAAAATTGAAGGGTA
1 AAGAAATGAATCCCTGGAAAATTGAAGGGTA
8697324 AAG-AATGAATCCCTGGAAAATTGAAGGGTA
1 AAGAAATGAATCCCTGGAAAATTGAAGGGTA
8697354 AAG-AATGAAT
1 AAGAAATGAAT
8697364 TCCTCCATCT
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
29 3 0.08
30 34 0.92
ACGTcount: A:0.46, C:0.07, G:0.26, T:0.21
Consensus pattern (31 bp):
AAGAAATGAATCCCTGGAAAATTGAAGGGTA
Found at i:8698100 original size:16 final size:17
Alignment explanation
Indices: 8698067--8698100 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
8698057 ATATTTGTCC
*
8698067 TCAAATCTTGTCTTTGA
1 TCAAATCTTGTATTTGA
8698084 TCAAATCTTG-ATTTGA
1 TCAAATCTTGTATTTGA
8698100 T
1 T
8698101 TTGCTTGGCC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 6 0.38
17 10 0.62
ACGTcount: A:0.26, C:0.15, G:0.12, T:0.47
Consensus pattern (17 bp):
TCAAATCTTGTATTTGA
Found at i:8701859 original size:20 final size:21
Alignment explanation
Indices: 8701818--8701864 Score: 53
Period size: 20 Copynumber: 2.3 Consensus size: 21
8701808 AAAATAACAA
*
8701818 AATAATA-AGAGCTAATAAAT
1 AATAATATTGAGCTAATAAAT
* *
8701838 AA-AATATTGAGCTTATATAT
1 AATAATATTGAGCTAATAAAT
8701858 AATAATA
1 AATAATA
8701865 ATTAATCCTA
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
19 4 0.18
20 14 0.64
21 4 0.18
ACGTcount: A:0.55, C:0.04, G:0.09, T:0.32
Consensus pattern (21 bp):
AATAATATTGAGCTAATAAAT
Found at i:8703421 original size:17 final size:17
Alignment explanation
Indices: 8703396--8703434 Score: 69
Period size: 17 Copynumber: 2.3 Consensus size: 17
8703386 AGTATTAGGA
*
8703396 TTGAGTATGCTTGAATT
1 TTGAATATGCTTGAATT
8703413 TTGAATATGCTTGAATT
1 TTGAATATGCTTGAATT
8703430 TTGAA
1 TTGAA
8703435 GTTTTATGAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.28, C:0.05, G:0.21, T:0.46
Consensus pattern (17 bp):
TTGAATATGCTTGAATT
Found at i:8704070 original size:25 final size:25
Alignment explanation
Indices: 8704042--8704149 Score: 123
Period size: 25 Copynumber: 4.3 Consensus size: 25
8704032 CACAGCTCTT
8704042 ATGAGCTTCCCGATATTCAACTCGC
1 ATGAGCTTCCCGATATTCAACTCGC
* *
8704067 ATGAGCTTCCCGTTATACAACTCGC
1 ATGAGCTTCCCGATATTCAACTCGC
* **
8704092 ATGAGCTTCCCGTTATAT-AGGTCGC
1 ATGAGCTTCCCGATAT-TCAACTCGC
8704117 ATGAGCTTCCC-ATTATTCAACTCAG-
1 ATGAGCTTCCCGA-TATTCAACTC-GC
8704142 ATGAGCTT
1 ATGAGCTT
8704150 TCCGTCTCCA
Statistics
Matches: 71, Mismatches: 8, Indels: 8
0.82 0.09 0.09
Matches are distributed among these distances:
24 1 0.01
25 69 0.97
26 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.18, T:0.31
Consensus pattern (25 bp):
ATGAGCTTCCCGATATTCAACTCGC
Found at i:8712297 original size:25 final size:25
Alignment explanation
Indices: 8712227--8712316 Score: 90
Period size: 25 Copynumber: 3.6 Consensus size: 25
8712217 GATACTTAAT
** *
8712227 TCGCATGAGCTTCCCGTTATACAAC
1 TCGCATGAGCTTCCCGTTATTTAGC
* * *
8712252 TCGCATGAGTTTCTCATTATTTAGC
1 TCGCATGAGCTTCCCGTTATTTAGC
*
8712277 TCGTATGAGCTTCCCGTTATTTAGC
1 TCGCATGAGCTTCCCGTTATTTAGC
* * *
8712302 TTGGAGGAGCTTCCC
1 TCGCATGAGCTTCCC
8712317 ATTTACAACT
Statistics
Matches: 52, Mismatches: 13, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
25 52 1.00
ACGTcount: A:0.19, C:0.26, G:0.20, T:0.36
Consensus pattern (25 bp):
TCGCATGAGCTTCCCGTTATTTAGC
Found at i:8713137 original size:20 final size:20
Alignment explanation
Indices: 8713105--8713142 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
8713095 TGTTTCACAT
8713105 TCATATAACTAATATTTATA
1 TCATATAACTAATATTTATA
*
8713125 TCAT-TAACATAATTTTTA
1 TCATATAAC-TAATATTTA
8713143 ACTTAATAAC
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 4 0.25
20 12 0.75
ACGTcount: A:0.42, C:0.11, G:0.00, T:0.47
Consensus pattern (20 bp):
TCATATAACTAATATTTATA
Found at i:8713518 original size:6 final size:6
Alignment explanation
Indices: 8713507--8713532 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
8713497 TAATTCATAC
8713507 TTTATT TTTATT TTTATT TTTATT TT
1 TTTATT TTTATT TTTATT TTTATT TT
8713533 CATCATTTCA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (6 bp):
TTTATT
Found at i:8713659 original size:18 final size:18
Alignment explanation
Indices: 8713636--8713676 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
8713626 TACTTTTCTC
8713636 TTTCTA-TCACAATTCCAA
1 TTTCTATTCACAATT-CAA
*
8713654 TTTCTATTCATAATTCAA
1 TTTCTATTCACAATTCAA
8713672 TTTCT
1 TTTCT
8713677 CTTTTTTTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 14 0.67
19 7 0.33
ACGTcount: A:0.29, C:0.22, G:0.00, T:0.49
Consensus pattern (18 bp):
TTTCTATTCACAATTCAA
Found at i:8713848 original size:39 final size:38
Alignment explanation
Indices: 8713781--8713874 Score: 100
Period size: 39 Copynumber: 2.4 Consensus size: 38
8713771 ACCAATATGG
*
8713781 CACCCAGTGCCTCATCGGATAGTTCGAAGTAATAGTTGA
1 CACCCAGTGCCTCATCGGATAGTCCGAAGTAA-AGTTGA
* * *
8713820 CACCCAGTGTCTCATCGGCCTAG-CCGAAGTAAAGTTGG
1 CACCCAGTGCCTCATCGG-ATAGTCCGAAGTAAAGTTGA
* * *
8713858 TACCTAGTACCTCATCG
1 CACCCAGTGCCTCATCG
8713875 AATCTATCTG
Statistics
Matches: 46, Mismatches: 8, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
38 18 0.39
39 25 0.54
40 3 0.07
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (38 bp):
CACCCAGTGCCTCATCGGATAGTCCGAAGTAAAGTTGA
Found at i:8714834 original size:12 final size:12
Alignment explanation
Indices: 8714819--8714849 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
8714809 TTCTCTTTTA
8714819 TTTTTCTTTCCC
1 TTTTTCTTTCCC
*
8714831 TTTTTCTTTCTC
1 TTTTTCTTTCCC
8714843 TTTTTCT
1 TTTTTCT
8714850 CCCCTGCTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (12 bp):
TTTTTCTTTCCC
Found at i:8715409 original size:26 final size:26
Alignment explanation
Indices: 8715380--8715487 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
8715370 TGGTACAAAT
8715380 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
8715406 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
8715432 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
8715458 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
8715484 TGAT
1 TGAT
8715488 GGGCATTTCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:8717153 original size:27 final size:26
Alignment explanation
Indices: 8717104--8717216 Score: 147
Period size: 27 Copynumber: 4.2 Consensus size: 26
8717094 AGGAAGCGTC
8717104 CTGGTGGCTATG-CACAATTATCTGAT
1 CTGGTGGCTATGCCACAA-TATCTGAT
* *
8717130 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCACA-ATATCTGAT
*
8717157 CTGGTGGCTATGCCACGATTATCTGAT
1 CTGGTGGCTATGCCAC-AATATCTGAT
*
8717184 CTGGTGGCTCTGCCACAATATCTGTAT
1 CTGGTGGCTATGCCACAATATCTG-AT
8717211 CTGGTG
1 CTGGTG
8717217 ACTTCATCAC
Statistics
Matches: 76, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
26 18 0.24
27 56 0.74
28 2 0.03
ACGTcount: A:0.18, C:0.23, G:0.25, T:0.35
Consensus pattern (26 bp):
CTGGTGGCTATGCCACAATATCTGAT
Found at i:8717205 original size:53 final size:54
Alignment explanation
Indices: 8717104--8717216 Score: 194
Period size: 54 Copynumber: 2.1 Consensus size: 54
8717094 AGGAAGCGTC
8717104 CTGGTGGCTATGCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGT-T
1 CTGGTGGCTATGCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTAT
*
8717157 CTGGTGGCTATGCCACGATTATCTGATCTGGTGGCTCTGCCACA-ATATCTGTAT
1 CTGGTGGCTATG-CACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTAT
8717211 CTGGTG
1 CTGGTG
8717217 ACTTCATCAC
Statistics
Matches: 57, Mismatches: 1, Indels: 3
0.93 0.02 0.05
Matches are distributed among these distances:
53 20 0.35
54 37 0.65
ACGTcount: A:0.18, C:0.23, G:0.25, T:0.35
Consensus pattern (54 bp):
CTGGTGGCTATGCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTAT
Found at i:8722505 original size:26 final size:26
Alignment explanation
Indices: 8722476--8722583 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
8722466 TGGTACAAAT
8722476 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
8722502 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
8722528 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
8722554 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
8722580 TGAT
1 TGAT
8722584 GGGCATTTCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:8724163 original size:38 final size:39
Alignment explanation
Indices: 8724066--8724170 Score: 117
Period size: 39 Copynumber: 2.7 Consensus size: 39
8724056 ATCACGATTT
* ** *
8724066 GCACAAATGCCTTCGGGTCTTAG-CCGGATAGAATGACTC
1 GCACGAATGCCTTCGGGTCTTAGCCCGGATAG-ACCACTA
8724105 GCACGAATGCCTTCGGGTCTTAGCCCGGAATAG-CCACTA
1 GCACGAATGCCTTCGGGTCTTAGCCCGG-ATAGACCACTA
* *
8724144 GCAC-ATTGCCTTCGGGTCTTAACCCGG
1 GCACGAATGCCTTCGGGTCTTAGCCCGG
8724171 TTATAATTTC
Statistics
Matches: 58, Mismatches: 6, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
38 21 0.36
39 29 0.50
40 4 0.07
41 4 0.07
ACGTcount: A:0.22, C:0.30, G:0.26, T:0.23
Consensus pattern (39 bp):
GCACGAATGCCTTCGGGTCTTAGCCCGGATAGACCACTA
Found at i:8732175 original size:40 final size:39
Alignment explanation
Indices: 8732123--8732229 Score: 133
Period size: 40 Copynumber: 2.7 Consensus size: 39
8732113 TATCACGATT
** *
8732123 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAGAACCACTA
* *
8732163 GCACGAATGCCTTCGGGTCTTAGCCCGGATATAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAGAACCACTA
* *
8732203 GCACATTGCCTTCGGGTCTTAACCCGG
1 GCACAATGCCTTCGGGTCTTAGCCCGG
8732230 TTATAATTTC
Statistics
Matches: 59, Mismatches: 8, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
39 21 0.36
40 38 0.64
ACGTcount: A:0.21, C:0.30, G:0.25, T:0.23
Consensus pattern (39 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATAGAACCACTA
Found at i:8732190 original size:79 final size:79
Alignment explanation
Indices: 8732083--8732229 Score: 181
Period size: 79 Copynumber: 1.9 Consensus size: 79
8732073 TATGGTAACC
* * *
8732083 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGA-TTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCAC-AATGCCTTCGGGTCTTAA
8732146 CCCGGATAGAATGACT
64 CCCGGATAGAATGACT
* * * * * *
8732162 CGCACGAATGCCTTCGGGTCTTAGCCCGGATATAGCCACTAGCACATTGCCTTCGGGTCTTAACC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAATGCCTTCGGGTCTTAACC
8732227 CGG
66 CGG
8732230 TTATAATTTC
Statistics
Matches: 57, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
78 1 0.02
79 51 0.89
80 5 0.09
ACGTcount: A:0.23, C:0.31, G:0.24, T:0.22
Consensus pattern (79 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAATGCCTTCGGGTCTTAACC
CGGATAGAATGACT
Found at i:8732229 original size:39 final size:40
Alignment explanation
Indices: 8732092--8732235 Score: 139
Period size: 39 Copynumber: 3.6 Consensus size: 40
8732082 CCGCACCAAG
* * * * * * *
8732092 GCCTACGGGACTTAACCCGGATATCACGA-TTGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACCACTAGCACGAAT
* ** *
8732131 GCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACCACTAGCACGAAT
* *
8732171 GCCTTCGGGTCTTAGCCCGGATATAGCCACTAGCAC-ATT
1 GCCTTCGGGTCTTAGCCCGGATATAACCACTAGCACGAAT
* *
8732210 GCCTTCGGGTCTTAACCCGGTTATAA
1 GCCTTCGGGTCTTAGCCCGGATATAA
8732236 TTTCCAGCAT
Statistics
Matches: 87, Mismatches: 17, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
39 48 0.55
40 39 0.45
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAACCACTAGCACGAAT
Found at i:8740265 original size:79 final size:80
Alignment explanation
Indices: 8740122--8740328 Score: 190
Period size: 79 Copynumber: 2.6 Consensus size: 80
8740112 ACCTTCGGAG
* * ** * * * *
8740122 CTTAA-CCGGATATAGCTACTCGTTCAAACGCCTTCGGGACATAGCCCGGATATGGTAACCCGCA
1 CTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATGATAACCCGCA
8740186 CCAAGGCCTACGGGA
66 CCAAGGCCTACGGGA
* * * *
8740201 CTTAACCCGGATATCA-CGA-TTGCACAAATGCCTTCGGGTCTTAGCCCGGATA-GAATGACTCG
1 CTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATG-ATAACCCG
* * * *
8740263 CACGAATGCCTTCGGGT
64 CACCAAGGCCTACGGGA
* * *
8740280 CTTAGCCCGGATATAGCCACTAGCAC-ATTGCCTTCGGGTCTTAACCCGG
1 CTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAGCCCGG
8740329 TTATAATTTC
Statistics
Matches: 104, Mismatches: 19, Indels: 10
0.78 0.14 0.08
Matches are distributed among these distances:
78 2 0.02
79 86 0.83
80 15 0.14
81 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.24, T:0.22
Consensus pattern (80 bp):
CTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATGATAACCCGCA
CCAAGGCCTACGGGA
Found at i:8740274 original size:40 final size:39
Alignment explanation
Indices: 8740222--8740328 Score: 133
Period size: 40 Copynumber: 2.7 Consensus size: 39
8740212 TATCACGATT
** *
8740222 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAGAACCACTA
* *
8740262 GCACGAATGCCTTCGGGTCTTAGCCCGGATATAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAGAACCACTA
* *
8740302 GCACATTGCCTTCGGGTCTTAACCCGG
1 GCACAATGCCTTCGGGTCTTAGCCCGG
8740329 TTATAATTTC
Statistics
Matches: 59, Mismatches: 8, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
39 21 0.36
40 38 0.64
ACGTcount: A:0.21, C:0.30, G:0.25, T:0.23
Consensus pattern (39 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATAGAACCACTA
Found at i:8740328 original size:39 final size:40
Alignment explanation
Indices: 8740191--8740334 Score: 139
Period size: 39 Copynumber: 3.6 Consensus size: 40
8740181 CCGCACCAAG
* * * * * * *
8740191 GCCTACGGGACTTAACCCGGATATCACGA-TTGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACCACTAGCACGAAT
* ** *
8740230 GCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACCACTAGCACGAAT
* *
8740270 GCCTTCGGGTCTTAGCCCGGATATAGCCACTAGCAC-ATT
1 GCCTTCGGGTCTTAGCCCGGATATAACCACTAGCACGAAT
* *
8740309 GCCTTCGGGTCTTAACCCGGTTATAA
1 GCCTTCGGGTCTTAGCCCGGATATAA
8740335 TTTCCAGCAT
Statistics
Matches: 87, Mismatches: 17, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
39 48 0.55
40 39 0.45
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAACCACTAGCACGAAT
Found at i:8743884 original size:40 final size:39
Alignment explanation
Indices: 8743802--8743958 Score: 192
Period size: 40 Copynumber: 3.9 Consensus size: 39
8743792 TTCAATGATG
* * * *
8743802 TCCGGGCTAAGTCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGACTAAGTCCGAAGGCATTTGTGC-GAGTTACTAAA
*
8743841 TCCGGACTAAGATCCGAAGGCATTAGTGCGAGTTACTAAA
1 TCCGGACTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
8743881 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
* *
8743921 TCCGGGA-TAAGTCCCAAAGGCATTTGTGCGAGCTACTA
1 TCC-GGACTAAGT-CCGAAGGCATTTGTGCGAGTTACTA
8743959 TAACCGGGCC
Statistics
Matches: 106, Mismatches: 8, Indels: 7
0.88 0.07 0.06
Matches are distributed among these distances:
39 11 0.10
40 86 0.81
41 9 0.08
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (39 bp):
TCCGGACTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:8743975 original size:40 final size:40
Alignment explanation
Indices: 8743857--8743986 Score: 131
Period size: 40 Copynumber: 3.2 Consensus size: 40
8743847 CTAAGATCCG
* * *
8743857 AAGGCATTAGTGCGAGTTACTAAATCC-GGACTAAGAT-CCG
1 AAGGCATTTGTGCGAGCTACTAAATCCGGGAC-AAG-TCCCA
* *
8743897 AAGGCATTTGTGCGAGTTACTAAATCCGGGATAAGTCCCA
1 AAGGCATTTGTGCGAGCTACTAAATCCGGGACAAGTCCCA
* * *
8743937 AAGGCATTTGTGCGAGCTACTATAA-CCGGGCCATGTCCCG
1 AAGGCATTTGTGCGAGCTACTA-AATCCGGGACAAGTCCCA
*
8743977 AAGGTATTTG
1 AAGGCATTTG
8743987 AACGAGTGGC
Statistics
Matches: 78, Mismatches: 9, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
39 1 0.01
40 72 0.92
41 5 0.06
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (40 bp):
AAGGCATTTGTGCGAGCTACTAAATCCGGGACAAGTCCCA
Found at i:8750892 original size:33 final size:34
Alignment explanation
Indices: 8750844--8750915 Score: 101
Period size: 33 Copynumber: 2.1 Consensus size: 34
8750834 ATAGGCCCAC
* * * *
8750844 ACTGTTACTGCATAGGGCTTAGGCCCAGA-CTTT
1 ACTGTTAATGAATAGGGCTCAGGCCCAGACCGTT
8750877 ACTGTTAATGAATAGGGCTCAGGCCCAGACCGTT
1 ACTGTTAATGAATAGGGCTCAGGCCCAGACCGTT
8750911 ACTGT
1 ACTGT
8750916 ATGCACTATT
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
33 26 0.76
34 8 0.24
ACGTcount: A:0.24, C:0.24, G:0.25, T:0.28
Consensus pattern (34 bp):
ACTGTTAATGAATAGGGCTCAGGCCCAGACCGTT
Found at i:8751585 original size:27 final size:27
Alignment explanation
Indices: 8751551--8751604 Score: 99
Period size: 27 Copynumber: 2.0 Consensus size: 27
8751541 CTATGAGTGT
*
8751551 ATAAATGTTTGCTAATGATAGTTTGTA
1 ATAAATGTTTGCTAAGGATAGTTTGTA
8751578 ATAAATGTTTGCTAAGGATAGTTTGTA
1 ATAAATGTTTGCTAAGGATAGTTTGTA
8751605 TAATTTGTAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.33, C:0.04, G:0.20, T:0.43
Consensus pattern (27 bp):
ATAAATGTTTGCTAAGGATAGTTTGTA
Found at i:8751587 original size:13 final size:14
Alignment explanation
Indices: 8751551--8751592 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
8751541 CTATGAGTGT
8751551 ATAAATGTTTGCTA
1 ATAAATGTTTGCTA
*
8751565 AT-GATAGTTTG-TA
1 ATAAAT-GTTTGCTA
8751578 ATAAATGTTTGCTA
1 ATAAATGTTTGCTA
8751592 A
1 A
8751593 GGATAGTTTG
Statistics
Matches: 23, Mismatches: 2, Indels: 6
0.74 0.06 0.19
Matches are distributed among these distances:
13 11 0.48
14 12 0.52
ACGTcount: A:0.36, C:0.05, G:0.17, T:0.43
Consensus pattern (14 bp):
ATAAATGTTTGCTA
Found at i:8752922 original size:28 final size:28
Alignment explanation
Indices: 8752891--8752951 Score: 104
Period size: 28 Copynumber: 2.2 Consensus size: 28
8752881 AAGTTTTTGT
* *
8752891 TTATGAAATGGCTTATACAAGCCTTAGG
1 TTATGAAATGGCTCACACAAGCCTTAGG
8752919 TTATGAAATGGCTCACACAAGCCTTAGG
1 TTATGAAATGGCTCACACAAGCCTTAGG
8752947 TTATG
1 TTATG
8752952 GTGACCATAT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.31, C:0.16, G:0.21, T:0.31
Consensus pattern (28 bp):
TTATGAAATGGCTCACACAAGCCTTAGG
Found at i:8753888 original size:19 final size:18
Alignment explanation
Indices: 8753866--8753905 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 18
8753856 TTTTAGTTTA
8753866 TAATTAAT-TTTAATTAACT
1 TAATTAATGTTT-ATTAA-T
8753885 TAATTAATGTTTATTAAT
1 TAATTAATGTTTATTAAT
8753903 TAA
1 TAA
8753906 CCTTAAGCAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
18 4 0.20
19 13 0.65
20 3 0.15
ACGTcount: A:0.42, C:0.03, G:0.03, T:0.53
Consensus pattern (18 bp):
TAATTAATGTTTATTAAT
Found at i:8761390 original size:47 final size:47
Alignment explanation
Indices: 8761322--8761417 Score: 174
Period size: 47 Copynumber: 2.0 Consensus size: 47
8761312 AATTGACTTG
*
8761322 TGATGATTCAATGAAAATGTGATGATATGTGTGCTAGTATAAGACCA
1 TGATGATTAAATGAAAATGTGATGATATGTGTGCTAGTATAAGACCA
*
8761369 TGATGATTAAATGAAAATGTGATGATATGTGTTCTAGTATAAGACCA
1 TGATGATTAAATGAAAATGTGATGATATGTGTGCTAGTATAAGACCA
8761416 TG
1 TG
8761418 TCCGGGACAT
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 47 1.00
ACGTcount: A:0.36, C:0.07, G:0.23, T:0.33
Consensus pattern (47 bp):
TGATGATTAAATGAAAATGTGATGATATGTGTGCTAGTATAAGACCA
Found at i:8774285 original size:40 final size:40
Alignment explanation
Indices: 8774240--8774369 Score: 163
Period size: 40 Copynumber: 3.2 Consensus size: 40
8774230 CGGAATATAA
*
8774240 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACAAATGCCTTCGGGTCTTAAC
* ** * *
8774280 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAAC
* * *
8774320 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAAC
8774360 CCGGATATAA
1 CCGGATATAA
8774370 TTTCCAGCAT
Statistics
Matches: 74, Mismatches: 15, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 73 0.99
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAAC
Found at i:8781608 original size:40 final size:40
Alignment explanation
Indices: 8781555--8781702 Score: 174
Period size: 40 Copynumber: 3.7 Consensus size: 40
8781545 TTAACCACAA
* * *** *
8781555 GCACAATTGCCTTCGGGTCTTAACCCGGATTTGGTAACTT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACAACTC
8781595 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACAACTC
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACAACTC
*
8781635 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAATC-ACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAA-CAACTC
* * *
8781675 GCATAAATGCCTTCGGGACTTAGCCCGG
1 GCACAATTGCCTTCGGGTCTTAGCCCGG
8781703 GTATCATTCA
Statistics
Matches: 96, Mismatches: 9, Indels: 6
0.86 0.08 0.05
Matches are distributed among these distances:
39 2 0.02
40 91 0.95
41 3 0.03
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.26
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACAACTC
Found at i:8789697 original size:40 final size:40
Alignment explanation
Indices: 8789653--8789800 Score: 174
Period size: 40 Copynumber: 3.7 Consensus size: 40
8789643 TTAACCACAA
* * *** *
8789653 GCACAATTGCCTTCGGGTCTTAACCCGGATTTGGTAACTT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACAACTC
8789693 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACAACTC
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACAACTC
*
8789733 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAATC-ACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAA-CAACTC
* * *
8789773 GCATAAATGCCTTCGGGACTTAGCCCGG
1 GCACAATTGCCTTCGGGTCTTAGCCCGG
8789801 GTATCATTCA
Statistics
Matches: 96, Mismatches: 9, Indels: 6
0.86 0.08 0.05
Matches are distributed among these distances:
39 2 0.02
40 91 0.95
41 3 0.03
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.26
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACAACTC
Found at i:8816026 original size:47 final size:48
Alignment explanation
Indices: 8815975--8816161 Score: 213
Period size: 47 Copynumber: 4.0 Consensus size: 48
8815965 AACACCCATT
** *
8815975 TTTTTCTTCTTC-CATTTTCTCTGTTTGAAACTATAATTAGCCAAAAG
1 TTTTTCTTCTTCTCATTTTCTCTGTTTGAAACTATAACCAGTCAAAAG
8816022 TTTTTC--CTGTCTCATTTTCTCTGTTTGAAACTATAACCAGTCAAAAG
1 TTTTTCTTCT-TCTCATTTTCTCTGTTTGAAACTATAACCAGTCAAAAG
* ** * *
8816069 TTTTTCCTC-TCTTGTTTTCTTTGTTTGAAACTATAACCAGACAAAAG
1 TTTTTCTTCTTCTCATTTTCTCTGTTTGAAACTATAACCAGTCAAAAG
* * * * *
8816116 TTTTCCCTC-TCTCGTTTTCTCTGTTTAAAACTATAACTAGTCAAAA
1 TTTTTCTTCTTCTCATTTTCTCTGTTTGAAACTATAACCAGTCAAAA
8816162 TTTGTTTTTT
Statistics
Matches: 123, Mismatches: 13, Indels: 8
0.85 0.09 0.06
Matches are distributed among these distances:
45 2 0.02
46 2 0.02
47 118 0.96
49 1 0.01
ACGTcount: A:0.26, C:0.21, G:0.09, T:0.44
Consensus pattern (48 bp):
TTTTTCTTCTTCTCATTTTCTCTGTTTGAAACTATAACCAGTCAAAAG
Found at i:8816074 original size:94 final size:94
Alignment explanation
Indices: 8815988--8816161 Score: 258
Period size: 94 Copynumber: 1.9 Consensus size: 94
8815978 TTCTTCTTCC
** * * * *
8815988 ATTTTCTCTGTTTGAAACTATAATTAGCCAAAAGTTTTTCCTGTCTCATTTTCTCTGTTTGAAAC
1 ATTTTCTCTGTTTGAAACTATAACCAGACAAAAGTTTTCCCTCTCTCATTTTCTCTGTTTAAAAC
8816053 TATAACCAGTCAAAAGTTTTTCCTCTCTT
66 TATAACCAGTCAAAAGTTTTTCCTCTCTT
* * *
8816082 GTTTTCTTTGTTTGAAACTATAACCAGACAAAAGTTTTCCCTCTCTCGTTTTCTCTGTTTAAAAC
1 ATTTTCTCTGTTTGAAACTATAACCAGACAAAAGTTTTCCCTCTCTCATTTTCTCTGTTTAAAAC
*
8816147 TATAACTAGTCAAAA
66 TATAACCAGTCAAAA
8816162 TTTGTTTTTT
Statistics
Matches: 70, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
94 70 1.00
ACGTcount: A:0.28, C:0.20, G:0.10, T:0.43
Consensus pattern (94 bp):
ATTTTCTCTGTTTGAAACTATAACCAGACAAAAGTTTTCCCTCTCTCATTTTCTCTGTTTAAAAC
TATAACCAGTCAAAAGTTTTTCCTCTCTT
Found at i:8819791 original size:49 final size:49
Alignment explanation
Indices: 8819719--8819816 Score: 196
Period size: 49 Copynumber: 2.0 Consensus size: 49
8819709 TTGATGATGA
8819719 ATCCGGCTTCTGAGATGGATCAATCGGCTTCCTTGGAGTAATTCCTTAC
1 ATCCGGCTTCTGAGATGGATCAATCGGCTTCCTTGGAGTAATTCCTTAC
8819768 ATCCGGCTTCTGAGATGGATCAATCGGCTTCCTTGGAGTAATTCCTTAC
1 ATCCGGCTTCTGAGATGGATCAATCGGCTTCCTTGGAGTAATTCCTTAC
8819817 TCTCTATTAT
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
49 49 1.00
ACGTcount: A:0.20, C:0.24, G:0.22, T:0.33
Consensus pattern (49 bp):
ATCCGGCTTCTGAGATGGATCAATCGGCTTCCTTGGAGTAATTCCTTAC
Found at i:8829484 original size:30 final size:30
Alignment explanation
Indices: 8829450--8829507 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 30
8829440 CATGGCCATG
* *
8829450 ACACATGGGCATGTG-GTCTACCCGTGTGTC
1 ACACACGGGCATGTGAATC-ACCCGTGTGTC
*
8829480 ACACACGGGCGTGTGAATCACCCGTGTG
1 ACACACGGGCATGTGAATCACCCGTGTG
8829508 GAAGTGCCTA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
30 22 0.92
31 2 0.08
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.22
Consensus pattern (30 bp):
ACACACGGGCATGTGAATCACCCGTGTGTC
Found at i:8831583 original size:11 final size:11
Alignment explanation
Indices: 8831567--8831592 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
8831557 AAGAAATGTC
8831567 AAAATAAAAAG
1 AAAATAAAAAG
8831578 AAAATAAAAAG
1 AAAATAAAAAG
8831589 AAAA
1 AAAA
8831593 GCAATTTAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.85, C:0.00, G:0.08, T:0.08
Consensus pattern (11 bp):
AAAATAAAAAG
Found at i:8834276 original size:64 final size:64
Alignment explanation
Indices: 8834195--8834378 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
8834185 AGACATTATG
* * * *
8834195 ATGTAGCTAGGTTGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * *
8834259 ATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
8834324 AA
63 AA
* * *
8834326 AT-TGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT-GTACAAGAGAGC
1 ATGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAGC
8834379 CGAACTATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 24 0.24
66 21 0.21
67 33 0.34
ACGTcount: A:0.29, C:0.16, G:0.31, T:0.24
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:8835466 original size:2 final size:2
Alignment explanation
Indices: 8835459--8835485 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
8835449 TCATGACATG
8835459 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
8835486 GACTAGTCTC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:8864906 original size:40 final size:40
Alignment explanation
Indices: 8864862--8864941 Score: 160
Period size: 40 Copynumber: 2.0 Consensus size: 40
8864852 GTAGAAATCC
8864862 CTGATTTATGTCAATATTCCTTTTGAGACTAAAAACAACT
1 CTGATTTATGTCAATATTCCTTTTGAGACTAAAAACAACT
8864902 CTGATTTATGTCAATATTCCTTTTGAGACTAAAAACAACT
1 CTGATTTATGTCAATATTCCTTTTGAGACTAAAAACAACT
8864942 AACTCTAGGT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.35, C:0.17, G:0.10, T:0.38
Consensus pattern (40 bp):
CTGATTTATGTCAATATTCCTTTTGAGACTAAAAACAACT
Found at i:8870384 original size:42 final size:43
Alignment explanation
Indices: 8870284--8870405 Score: 160
Period size: 43 Copynumber: 2.8 Consensus size: 43
8870274 ATCTTGTACA
* * *
8870284 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCAAATATCG
1 ATGCCAACATCCCAGACGTGGTCTTACACGAAATCAAATATCG
8870327 ATGCC-ACTATCCCAGACAG-GGTCTTACACGAAATCAAATA-CG
1 ATGCCAAC-ATCCCAGAC-GTGGTCTTACACGAAATCAAATATCG
*
8870369 ATGCCAACATCCCAGACGTGGTCTTAGACGTAAATCA
1 ATGCCAACATCCCAGACGTGGTCTTACACG-AAATCA
8870406 TAAGTTAATG
Statistics
Matches: 70, Mismatches: 4, Indels: 10
0.83 0.05 0.12
Matches are distributed among these distances:
41 1 0.01
42 28 0.40
43 40 0.57
44 1 0.01
ACGTcount: A:0.33, C:0.27, G:0.18, T:0.22
Consensus pattern (43 bp):
ATGCCAACATCCCAGACGTGGTCTTACACGAAATCAAATATCG
Found at i:8872596 original size:62 final size:62
Alignment explanation
Indices: 8872499--8872623 Score: 232
Period size: 62 Copynumber: 2.0 Consensus size: 62
8872489 TCACATCTCC
8872499 ATCCACTCGTTAATCTCCCCTAAGGGATTCAGCCACTCATGATATTCATTATCTCAAACTCA
1 ATCCACTCGTTAATCTCCCCTAAGGGATTCAGCCACTCATGATATTCATTATCTCAAACTCA
* *
8872561 ATCCATTCGTTAATCTCCCCTAAGGGATTTAGCCACTCATGATATTCATTATCTCAAACTCA
1 ATCCACTCGTTAATCTCCCCTAAGGGATTCAGCCACTCATGATATTCATTATCTCAAACTCA
8872623 A
1 A
8872624 ATGAATTAAA
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
62 61 1.00
ACGTcount: A:0.30, C:0.29, G:0.10, T:0.32
Consensus pattern (62 bp):
ATCCACTCGTTAATCTCCCCTAAGGGATTCAGCCACTCATGATATTCATTATCTCAAACTCA
Found at i:8874506 original size:128 final size:127
Alignment explanation
Indices: 8874265--8874555 Score: 341
Period size: 128 Copynumber: 2.3 Consensus size: 127
8874255 GCATGGTAGG
* * * ** * * * *
8874265 GCACGATTCCTCGAACTTGCAAACATTGAACATTGCTTTGTTTTAGAATTTAAAGAATACGAATG
1 GCACGATTCCCCGAATTTCCAAACATCAAACATTGCTTTGTTTCAAAATTTAAAAAACACGAATG
* * * *
8874330 TAATTCTAGAGGAATATTCGATTATTTTCAATAAACGATAAATCAAAACCCAACACAATAGA
66 AAATTCTAAAGGAATATTCGATTATTTTCAACAAACGAGAAATCAAAACCCAACACAATAGA
*
8874392 GCACGATTCCCCGAATTTCCAAATATCAAACATTGCTTTGTTTCAAAATTTAGAAAAACAC-AAG
1 GCACGATTCCCCGAATTTCCAAACATCAAACATTGCTTTGTTTCAAAATTTA-AAAAACACGAA-
* * * * * * * *
8874456 TGAAATTCTAAAGGAATATTTGATTATTTTGAACAAATGGGAAATCAAAACTCAGCACGATAGG
64 TGAAATTCTAAAGGAATATTCGATTATTTTCAACAAACGAGAAATCAAAACCCAACACAATAGA
* *
8874520 GCACGATTCCCCGAATTTCCAAGCATCAAATATTGC
1 GCACGATTCCCCGAATTTCCAAACATCAAACATTGC
8874556 CTTCGTTTTA
Statistics
Matches: 137, Mismatches: 25, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
127 46 0.34
128 91 0.66
ACGTcount: A:0.39, C:0.18, G:0.14, T:0.29
Consensus pattern (127 bp):
GCACGATTCCCCGAATTTCCAAACATCAAACATTGCTTTGTTTCAAAATTTAAAAAACACGAATG
AAATTCTAAAGGAATATTCGATTATTTTCAACAAACGAGAAATCAAAACCCAACACAATAGA
Found at i:8877293 original size:44 final size:44
Alignment explanation
Indices: 8877242--8877386 Score: 141
Period size: 44 Copynumber: 3.3 Consensus size: 44
8877232 GCCTGTTACT
*
8877242 CTACTGCTTAGGGAGTTAAGGCCCGTCATCTTCGATCTGTTCCC
1 CTACTGCTTAGGGAGTTAAGGCCCGTCATCTTCGATCTATTCCC
* * * ** * * * * *
8877286 CTCCTGCTTAGGGTGATAAGATCTGTAATTTTC-AGCCTATTACC
1 CTACTGCTTAGGGAGTTAAGGCCCGTCATCTTCGA-TCTATTCCC
* *
8877330 TTACTGCTTA-GGAGGTTAAGGCCCATCATCTTCGATCTATTCCC
1 CTACTGCTTAGGGA-GTTAAGGCCCGTCATCTTCGATCTATTCCC
8877374 CTACTGCTTAGGG
1 CTACTGCTTAGGG
8877387 TGATAAGATC
Statistics
Matches: 73, Mismatches: 24, Indels: 7
0.70 0.23 0.07
Matches are distributed among these distances:
43 3 0.04
44 67 0.92
45 3 0.04
ACGTcount: A:0.19, C:0.26, G:0.21, T:0.34
Consensus pattern (44 bp):
CTACTGCTTAGGGAGTTAAGGCCCGTCATCTTCGATCTATTCCC
Found at i:8877373 original size:88 final size:88
Alignment explanation
Indices: 8877207--8877753 Score: 688
Period size: 88 Copynumber: 6.2 Consensus size: 88
8877197 ATGCCATTTC
* * * * * *
8877207 AGGGAGATGAGATTTGTAATTTTCAGCCTGTTACTCTACTGCTTAGGGAGTTAAGGCCCGTCATC
1 AGGGTGATAAGATCTGTAATTTTCAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCCCATCATC
*
8877272 TTCGATCTGTTCCCCTCCTGCTT
66 TTCGATCTGTTCCCCTACTGCTT
* * *
8877295 AGGGTGATAAGATCTGTAATTTTCAGCCTATTACCTTACTGCTTAGGAGGTTAAGGCCCATCATC
1 AGGGTGATAAGATCTGTAATTTTCAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCCCATCATC
*
8877360 TTCGATCTATTCCCCTACTGCTT
66 TTCGATCTGTTCCCCTACTGCTT
* ** * *
8877383 AGGGTGATAAGATCTGTAA-ATTCAGCCAATTACCCTACTACTTAGGGGGTTAAGGGCCATCATC
1 AGGGTGATAAGATCTGTAATTTTCAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCCCATCATC
* *
8877447 TTCGATCTGTTCCTCTACTACTT
66 TTCGATCTGTTCCCCTACTGCTT
* *
8877470 AGGGTGATAAGATCTGTAATTTTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCCCATCGTC
1 AGGGTGATAAGATCTGTAATTTTCAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCCCATCATC
* * * *
8877535 TTCGATTTGCTCCACTAATGCTT
66 TTCGATCTGTTCCCCTACTGCTT
* * * * *
8877558 AGGGAGACAAGATCTATAATCTTCAGCCTGTTA-CCTACTGCTTAGGGGGTTAA-GACCATCATC
1 AGGGTGATAAGATCTGTAATTTTCAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCCCATCATC
* *
8877621 TTTGATTTGTTCCCCTACTGCTT
66 TTCGATCTGTTCCCCTACTGCTT
* * * * *
8877644 AGGGTGATAAGATCTTGTAA-ATTCAGCCTGTTACCCTACTGCTTAGGGGGTTAAGACTCGTCGT
1 AGGGTGATAAGATC-TGTAATTTTCAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCCCATCAT
* *
8877708 CTTCGATCTGCTCCACTACTGCTT
65 CTTCGATCTGTTCCCCTACTGCTT
* * *
8877732 AGGGAGACAAGATCTATAATTT
1 AGGGTGATAAGATCTGTAATTT
8877754 CCAACCCTAC
Statistics
Matches: 394, Mismatches: 60, Indels: 10
0.85 0.13 0.02
Matches are distributed among these distances:
86 51 0.13
87 126 0.32
88 217 0.55
ACGTcount: A:0.22, C:0.23, G:0.21, T:0.34
Consensus pattern (88 bp):
AGGGTGATAAGATCTGTAATTTTCAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCCCATCATC
TTCGATCTGTTCCCCTACTGCTT
Found at i:8877524 original size:175 final size:176
Alignment explanation
Indices: 8877223--8877751 Score: 733
Period size: 175 Copynumber: 3.0 Consensus size: 176
8877213 ATGAGATTTG
* * * * *
8877223 TAATTTTCAGCCTGTTACTCTACTGCTTAGGGAGTTAAGGCCCGTCATCTTCGATCTGTTCCCCT
1 TAATATTCAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGACCATCATCTTCGATCTGTTCCCCT
* * * *
8877288 CCTGCTTAGGGTGATAAGATCTGTAATTTTCAGCCTATTACCTTACTGCTTAGGAGGTTAAGGCC
66 ACTGCTTAGGGTGATAAGATCTGTAATTTTCAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCC
* ** * * * *
8877353 CATCATCTTCGATCTATTCCCCTACTGCTTAGGGTGATAAGATCTG
131 CATCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTA
** * * *
8877399 TAA-ATTCAGCCAATTACCCTACTACTTAGGGGGTTAAGGGCCATCATCTTCGATCTGTTCCTCT
1 TAATATTCAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGACCATCATCTTCGATCTGTTCCCCT
* *
8877463 ACTACTTAGGGTGATAAGATCTGTAATTTTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCC
66 ACTGCTTAGGGTGATAAGATCTGTAATTTTCAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCC
* *
8877528 CATCGTCTTCGATTTGCTCCACTAATGCTTAGGGAGACAAGATCTA
131 CATCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTA
* * *
8877574 TAATCTTCAGCCTGTTA-CCTACTGCTTAGGGGGTTAA-GACCATCATCTTTGATTTGTTCCCCT
1 TAATATTCAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGACCATCATCTTCGATCTGTTCCCCT
* *
8877637 ACTGCTTAGGGTGATAAGATCTTGTAA-ATTCAGCCTGTTACCCTACTGCTTAGGGGGTTAAGAC
66 ACTGCTTAGGGTGATAAGATC-TGTAATTTTCAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGC
* *
8877701 TCGTCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTA
130 CCATCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTA
8877748 TAAT
1 TAAT
8877752 TTCCAACCCT
Statistics
Matches: 311, Mismatches: 40, Indels: 6
0.87 0.11 0.02
Matches are distributed among these distances:
174 123 0.40
175 175 0.56
176 13 0.04
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.34
Consensus pattern (176 bp):
TAATATTCAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGACCATCATCTTCGATCTGTTCCCCT
ACTGCTTAGGGTGATAAGATCTGTAATTTTCAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCC
CATCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTA
Found at i:8877727 original size:44 final size:43
Alignment explanation
Indices: 8877415--8877735 Score: 149
Period size: 44 Copynumber: 7.3 Consensus size: 43
8877405 CAGCCAATTA
* * *
8877415 CCCTACTACTTAGGGGGTTAAGGGC-CATCATCTTCGATCTGTT
1 CCCTACTGCTTAGGGGGTTAA-GACTCATCGTCTTCGATCTGTT
* * * * ** *
8877458 CCTCTACTACTTAGGGTGATAAGA-TC-T-GTAATTTTTAGCCTGTT
1 CC-CTACTGCTTAGGGGGTTAAGACTCATCGT--CTTCGA-TCTGTT
* * * *
8877502 ACCCTACTGCTTAGGGGGTTAAGGCCCATCGTCTTCGATTTGCT
1 -CCCTACTGCTTAGGGGGTTAAGACTCATCGTCTTCGATCTGTT
* * ** ** *
8877546 CCACTAATGCTTAGGGAGACAAGA-TCTATAATCTTC-AGCCTGTT
1 CC-CTACTGCTTAGGGGGTTAAGACTC-ATCGTCTTCGA-TCTGTT
* * * *
8877590 ACCTACTGCTTAGGGGGTTAAGAC-CATCATCTTTGATTTGTT
1 CCCTACTGCTTAGGGGGTTAAGACTCATCGTCTTCGATCTGTT
* * * * *
8877632 CCCCTACTGCTTAGGGTGATAAGA-TC-TTGTAAATTC-AGCCTGTT
1 -CCCTACTGCTTAGGGGGTTAAGACTCATCGT--CTTCGA-TCTGTT
* *
8877676 ACCCTACTGCTTAGGGGGTTAAGACTCGTCGTCTTCGATCTGCT
1 -CCCTACTGCTTAGGGGGTTAAGACTCATCGTCTTCGATCTGTT
8877720 CCACTACTGCTTAGGG
1 CC-CTACTGCTTAGGG
8877736 AGACAAGATC
Statistics
Matches: 200, Mismatches: 55, Indels: 45
0.67 0.18 0.15
Matches are distributed among these distances:
41 1 0.00
42 14 0.07
43 54 0.27
44 116 0.58
45 9 0.05
46 4 0.02
47 2 0.01
ACGTcount: A:0.21, C:0.24, G:0.22, T:0.34
Consensus pattern (43 bp):
CCCTACTGCTTAGGGGGTTAAGACTCATCGTCTTCGATCTGTT
Found at i:8888109 original size:38 final size:39
Alignment explanation
Indices: 8887996--8888138 Score: 225
Period size: 39 Copynumber: 3.7 Consensus size: 39
8887986 CCGCACAAAG
*
8887996 GCCTTCGGGACTTAACCCGGATATCACAATTTGCACAATT
1 GCCTTCGGG-CTTAGCCCGGATATCACAATTTGCACAATT
* * *
8888036 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCACAATTTGCACAATT
*
8888075 GCCTTCGGGCTTAG-CCGGGTATCACAATTTGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCACAATTTGCACAATT
8888113 GCCTTCGGGCTTAGCCCGGATATCAC
1 GCCTTCGGGCTTAGCCCGGATATCAC
8888139 TCGAACATTC
Statistics
Matches: 93, Mismatches: 9, Indels: 3
0.89 0.09 0.03
Matches are distributed among these distances:
38 34 0.37
39 50 0.54
40 9 0.10
ACGTcount: A:0.22, C:0.29, G:0.22, T:0.27
Consensus pattern (39 bp):
GCCTTCGGGCTTAGCCCGGATATCACAATTTGCACAATT
Found at i:8888118 original size:77 final size:79
Alignment explanation
Indices: 8887987--8888137 Score: 252
Period size: 77 Copynumber: 1.9 Consensus size: 79
8887977 TTATGGAACC
8887987 CGCACAAAGGCCTTCGGGACTTAACCCGGATATCACAATTTGCACAATTGCCTTCGGGCTTAGCC
1 CGCACAAAGGCCTTCGGGACTTAACCCGGATATCACAATTTGCACAATTGCCTTCGGGCTTAGCC
8888052 CGGATATCATAACT
66 CGGATATCATAACT
** * *
8888066 CGCACAATTGCCTTCGGG-CTT-AGCCGGGTATCACAATTTGCACAATTGCCTTCGGGCTTAGCC
1 CGCACAAAGGCCTTCGGGACTTAACCCGGATATCACAATTTGCACAATTGCCTTCGGGCTTAGCC
8888129 CGGATATCA
66 CGGATATCA
8888138 CTCGAACATT
Statistics
Matches: 68, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
77 49 0.72
78 3 0.04
79 16 0.24
ACGTcount: A:0.24, C:0.29, G:0.22, T:0.25
Consensus pattern (79 bp):
CGCACAAAGGCCTTCGGGACTTAACCCGGATATCACAATTTGCACAATTGCCTTCGGGCTTAGCC
CGGATATCATAACT
Found at i:8895278 original size:39 final size:39
Alignment explanation
Indices: 8895194--8895346 Score: 216
Period size: 39 Copynumber: 3.9 Consensus size: 39
8895184 TATGGTAACC
** * *
8895194 CGCACAAAGGCCTTCGGGACTTAACCCGGATATCACAATT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
8895234 TGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
* *
8895273 CGCACAATTGCCTTCGGGCTTAGCCCGGGTATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
8895312 TGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
8895347 TCGAACATTC
Statistics
Matches: 101, Mismatches: 12, Indels: 1
0.89 0.11 0.01
Matches are distributed among these distances:
39 86 0.85
40 15 0.15
ACGTcount: A:0.24, C:0.30, G:0.22, T:0.25
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:8895320 original size:78 final size:79
Alignment explanation
Indices: 8895163--8895345 Score: 269
Period size: 78 Copynumber: 2.3 Consensus size: 79
8895153 TCGTTCAAAC
* * **
8895163 GCCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATC
1 GCCTTCGGG-CTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATC
8895228 ACAATTTGCACAATT
65 ACAATTTGCACAATT
* ** * *
8895243 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTGCCTTCGGG-CTTAGCCCGGGTATCA
1 GCCTTCGGGCTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATCA
8895307 CAATTTGCACAATT
66 CAATTTGCACAATT
8895321 GCCTTCGGGCTTAGCCCGGATATCA
1 GCCTTCGGGCTTAGCCCGGATATCA
8895346 CTCGAACATT
Statistics
Matches: 94, Mismatches: 9, Indels: 2
0.90 0.09 0.02
Matches are distributed among these distances:
78 53 0.56
79 32 0.34
80 9 0.10
ACGTcount: A:0.23, C:0.30, G:0.23, T:0.25
Consensus pattern (79 bp):
GCCTTCGGGCTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATCA
CAATTTGCACAATT
Found at i:8898361 original size:128 final size:127
Alignment explanation
Indices: 8898126--8898402 Score: 360
Period size: 128 Copynumber: 2.2 Consensus size: 127
8898116 GCATGGTAGG
* * * * * * * *
8898126 GCACGATTCCTCGAACTTGCAAACATTGAACATTGCTTTGTTTTAGAATTTAAAGAATACGAATG
1 GCACGATTCCCCGAATTTCCAAACATTGAACATTGCCTTGTTTCAAAATTTAAAAAACACGAATG
* *
8898191 TAATTCTAGAGGAATATTCGATTATTTTCAATAAACGAGAAATCAAAACCCAGCACAATAGA
66 AAATTCTAGAGGAATATTCGATTATTTTCAACAAACGAGAAATCAAAACCCAGCACAATAGA
* * *
8898253 GCACGATTCCCCGAATTTCCAAATATCT-AACATTGCCTTGTTTCAAAATTTAGAAAAACGCGAG
1 GCACGATTCCCCGAATTTCCAAACAT-TGAACATTGCCTTGTTTCAAAATTTA-AAAAACACGAA
* * * *
8898317 TGAAATTCTA-AGGGAATATTCGATTATTTTGAACAAACGGGAAATCAAAACCCAGCACGATAGG
64 TGAAATTCTAGA-GGAATATTCGATTATTTTCAACAAACGAGAAATCAAAACCCAGCACAATAGA
8898381 GCACGATTCCCCGAATTTCCAA
1 GCACGATTCCCCGAATTTCCAA
8898403 GCATCAAATA
Statistics
Matches: 130, Mismatches: 17, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
127 44 0.34
128 86 0.66
ACGTcount: A:0.38, C:0.19, G:0.16, T:0.27
Consensus pattern (127 bp):
GCACGATTCCCCGAATTTCCAAACATTGAACATTGCCTTGTTTCAAAATTTAAAAAACACGAATG
AAATTCTAGAGGAATATTCGATTATTTTCAACAAACGAGAAATCAAAACCCAGCACAATAGA
Found at i:8900333 original size:2 final size:2
Alignment explanation
Indices: 8900328--8900366 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
8900318 AAAATATGTG
8900328 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
8900367 GTGGGCACTA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:8902772 original size:16 final size:16
Alignment explanation
Indices: 8902741--8902773 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
8902731 AATTTTCACA
8902741 TATATATTAAATTTTT
1 TATATATTAAATTTTT
*
8902757 TATA-ATTAAATATTT
1 TATATATTAAATTTTT
8902772 TA
1 TA
8902774 AAATTTTAGA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 12 0.75
16 4 0.25
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (16 bp):
TATATATTAAATTTTT
Found at i:8924926 original size:3 final size:3
Alignment explanation
Indices: 8924918--8924983 Score: 132
Period size: 3 Copynumber: 22.0 Consensus size: 3
8924908 ATATATGCAT
8924918 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
8924966 ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA
8924984 TGAAAATACA
Statistics
Matches: 63, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 63 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:8925469 original size:23 final size:23
Alignment explanation
Indices: 8925442--8925493 Score: 61
Period size: 23 Copynumber: 2.3 Consensus size: 23
8925432 TTTGTACCGT
8925442 GGAGAGAAAAAAAAG-AGAGAAGG
1 GGAGAGAAAAAAAAGAAGAG-AGG
** *
8925465 GGAGAGGGAAGAAAGAAGAGAGG
1 GGAGAGAAAAAAAAGAAGAGAGG
8925488 GGAGAG
1 GGAGAG
8925494 GAGGGAGCTC
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
23 21 0.84
24 4 0.16
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (23 bp):
GGAGAGAAAAAAAAGAAGAGAGG
Found at i:8929151 original size:2 final size:2
Alignment explanation
Indices: 8929144--8929178 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
8929134 TATGAGAGTA
8929144 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
8929179 AGAGGCTTTA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:8931309 original size:21 final size:21
Alignment explanation
Indices: 8931280--8931320 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
8931270 AAGCTCGAAG
* *
8931280 GCTACACAGAAGCACATAAGT
1 GCTAAACAGAAACACATAAGT
*
8931301 GCTAAACAGAAACCCATAAG
1 GCTAAACAGAAACACATAAG
8931321 GGTTGAACGG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.46, C:0.24, G:0.17, T:0.12
Consensus pattern (21 bp):
GCTAAACAGAAACACATAAGT
Found at i:8931429 original size:42 final size:42
Alignment explanation
Indices: 8931285--8931431 Score: 152
Period size: 42 Copynumber: 3.5 Consensus size: 42
8931275 CGAAGGCTAC
* * * *
8931285 ACAGAAGCACATAAGTGCTAAACAGAAACCCATAAGGGTTGA
1 ACAGAAGCTCATAAGAGTTAAACAGAAACCCATAAGGGTTAA
* * * *
8931327 ACGGAAGTTCATAAGAGTTGAAA-GGAAACCTATAAGGGTTAA
1 ACAGAAGCTCATAAGAGTT-AAACAGAAACCCATAAGGGTTAA
* * *
8931369 ACAGAAGCTTAGAAGAGTTAAACAGAAACCCATTAGGGTTAA
1 ACAGAAGCTCATAAGAGTTAAACAGAAACCCATAAGGGTTAA
* * *
8931411 ACTGAAACTCATATGAGTTAA
1 ACAGAAGCTCATAAGAGTTAA
8931432 CTGAAGCTCA
Statistics
Matches: 83, Mismatches: 20, Indels: 4
0.78 0.19 0.04
Matches are distributed among these distances:
41 3 0.04
42 77 0.93
43 3 0.04
ACGTcount: A:0.44, C:0.14, G:0.22, T:0.20
Consensus pattern (42 bp):
ACAGAAGCTCATAAGAGTTAAACAGAAACCCATAAGGGTTAA
Found at i:8931430 original size:21 final size:21
Alignment explanation
Indices: 8931382--8931458 Score: 68
Period size: 21 Copynumber: 3.7 Consensus size: 21
8931372 GAAGCTTAGA
* *
8931382 AGAGTTAAACAGAAACCCATT
1 AGAGTTAAACTGAAACTCATT
*
8931403 AGGGTTAAACTGAAACTCA-T
1 AGAGTTAAACTGAAACTCATT
* *
8931423 ATGAGTT-AACTGAAGCTCATG
1 A-GAGTTAAACTGAAACTCATT
* *
8931444 AGAGCTAAACGGAAA
1 AGAGTTAAACTGAAA
8931459 GCAAACAAGG
Statistics
Matches: 44, Mismatches: 9, Indels: 6
0.75 0.15 0.10
Matches are distributed among these distances:
20 17 0.39
21 27 0.61
ACGTcount: A:0.43, C:0.16, G:0.21, T:0.21
Consensus pattern (21 bp):
AGAGTTAAACTGAAACTCATT
Found at i:8933856 original size:56 final size:56
Alignment explanation
Indices: 8933767--8933877 Score: 143
Period size: 56 Copynumber: 2.0 Consensus size: 56
8933757 CAACGCCAAC
** * * * *
8933767 GTCCCAGACGTGGTCTTACATGTATCCACATATCGATGCCACATATTGATGCCATT
1 GTCCCAGACGTGGTCTTACATGTAAACAAATATCGATACCACAAATCGATGCCATT
*
8933823 GTCCCAGACAG-GGTCTTACTTGTAAACAAATATCGATACCACAAATCGATGCCAT
1 GTCCCAGAC-GTGGTCTTACATGTAAACAAATATCGATACCACAAATCGATGCCAT
8933878 GGTCTTACTC
Statistics
Matches: 47, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
56 46 0.98
57 1 0.02
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.27
Consensus pattern (56 bp):
GTCCCAGACGTGGTCTTACATGTAAACAAATATCGATACCACAAATCGATGCCATT
Found at i:8947199 original size:3 final size:3
Alignment explanation
Indices: 8947191--8947234 Score: 88
Period size: 3 Copynumber: 14.7 Consensus size: 3
8947181 TTACAAAAGA
8947191 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC AT
1 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC AT
8947235 AGGCCTTCAC
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.34, C:0.32, G:0.00, T:0.34
Consensus pattern (3 bp):
ATC
Found at i:8947843 original size:51 final size:50
Alignment explanation
Indices: 8947788--8947886 Score: 119
Period size: 50 Copynumber: 2.0 Consensus size: 50
8947778 CTACCACATA
* * * *
8947788 ACATGTAA-CACATCCATAATGAACTTAGACCTCTCAACGAGCTTGGATGTT
1 ACATG-AATCACATCCAT-ATGAACTCAGACCACTCAACAAGCTCGGATGTT
* *
8947839 ACATGAATCGCATCCATATGAACTCGGACCACTCAACAAGCTCGGATG
1 ACATGAATCACATCCATATGAACTCAGACCACTCAACAAGCTCGGATG
8947887 CTCGCATCTA
Statistics
Matches: 41, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
50 28 0.68
51 13 0.32
ACGTcount: A:0.33, C:0.26, G:0.17, T:0.23
Consensus pattern (50 bp):
ACATGAATCACATCCATATGAACTCAGACCACTCAACAAGCTCGGATGTT
Found at i:8947906 original size:43 final size:42
Alignment explanation
Indices: 8947846--8947931 Score: 127
Period size: 43 Copynumber: 2.0 Consensus size: 42
8947836 GTTACATGAA
*
8947846 TCGCATCCATATGAACTCGGACCACTCAACAAGCTCGGATGC
1 TCGCATCCATATGAACTCGAACCACTCAACAAGCTCGGATGC
* * *
8947888 TCGCATCTATAATGAACTCGAACCTCTCAATAAGCTCGGATGC
1 TCGCATCCAT-ATGAACTCGAACCACTCAACAAGCTCGGATGC
8947931 T
1 T
8947932 ACATACCTCA
Statistics
Matches: 39, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
42 9 0.23
43 30 0.77
ACGTcount: A:0.29, C:0.30, G:0.17, T:0.23
Consensus pattern (42 bp):
TCGCATCCATATGAACTCGAACCACTCAACAAGCTCGGATGC
Found at i:8954277 original size:48 final size:48
Alignment explanation
Indices: 8954221--8954316 Score: 174
Period size: 48 Copynumber: 2.0 Consensus size: 48
8954211 CCCAGAGACG
*
8954221 AAGTCTTAGGATGTTTGTTGTAAATGAAACTAGATAGTCAAAATACTA
1 AAGTCTTAGGATGTTTGTTGTAAACGAAACTAGATAGTCAAAATACTA
*
8954269 AAGTCTTAGGGTGTTTGTTGTAAACGAAACTAGATAGTCAAAATACTA
1 AAGTCTTAGGATGTTTGTTGTAAACGAAACTAGATAGTCAAAATACTA
8954317 CATGGTCATT
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 46 1.00
ACGTcount: A:0.39, C:0.09, G:0.20, T:0.32
Consensus pattern (48 bp):
AAGTCTTAGGATGTTTGTTGTAAACGAAACTAGATAGTCAAAATACTA
Found at i:8956751 original size:13 final size:13
Alignment explanation
Indices: 8956729--8956761 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
8956719 AAGGGTTTGT
8956729 TTAT-TAAACTAA
1 TTATCTAAACTAA
8956741 TTATCTAAACTAA
1 TTATCTAAACTAA
*
8956754 TTAACTAA
1 TTATCTAA
8956762 TTTAATTGAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.39
Consensus pattern (13 bp):
TTATCTAAACTAA
Found at i:8960285 original size:55 final size:55
Alignment explanation
Indices: 8960214--8960341 Score: 193
Period size: 55 Copynumber: 2.3 Consensus size: 55
8960204 GCCGTGCACG
* *
8960214 AACCTGCCAAAATAACACGGGCGTGTGACACGCCCGTGCCTTGAAACCGTGGCCA
1 AACCTGCCAAAATAACACGAGCGTGCGACACGCCCGTGCCTTGAAACCGTGGCCA
* * * *
8960269 AACCTGTCAAATTAACACGAGCGTGCGACATGCCCGTGCCTTGAAACCGTGGCCG
1 AACCTGCCAAAATAACACGAGCGTGCGACACGCCCGTGCCTTGAAACCGTGGCCA
*
8960324 AACCTGCCAAAACAACAC
1 AACCTGCCAAAATAACAC
8960342 AAGTGTGGAC
Statistics
Matches: 64, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
55 64 1.00
ACGTcount: A:0.30, C:0.33, G:0.23, T:0.15
Consensus pattern (55 bp):
AACCTGCCAAAATAACACGAGCGTGCGACACGCCCGTGCCTTGAAACCGTGGCCA
Found at i:8962094 original size:29 final size:29
Alignment explanation
Indices: 8962062--8962139 Score: 102
Period size: 29 Copynumber: 2.7 Consensus size: 29
8962052 ATACCCTCCG
** *
8962062 AGCTCGCACACCCAGTGCCGTATTTTTCC
1 AGCTCGCACACTTAGTGCCGTATATTTCC
* *
8962091 AGCTTGCACACTTAGTGCCATATATTTCC
1 AGCTCGCACACTTAGTGCCGTATATTTCC
*
8962120 AGCACGCACACTTAGTGCCG
1 AGCTCGCACACTTAGTGCCG
8962140 ATCTCGTCAC
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.22, C:0.33, G:0.18, T:0.27
Consensus pattern (29 bp):
AGCTCGCACACTTAGTGCCGTATATTTCC
Found at i:8968048 original size:40 final size:40
Alignment explanation
Indices: 8967993--8968160 Score: 196
Period size: 40 Copynumber: 4.2 Consensus size: 40
8967983 TTGAATGATA
* *
8967993 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* *
8968033 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATTATAT
* * ** *
8968073 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* * * *
8968113 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
8968153 CC-GGCTAA
1 CCGGGCTAA
8968161 ATTCCGAAGA
Statistics
Matches: 106, Mismatches: 20, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
39 6 0.06
40 98 0.92
41 2 0.02
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
Found at i:8976062 original size:40 final size:40
Alignment explanation
Indices: 8976003--8976174 Score: 195
Period size: 40 Copynumber: 4.3 Consensus size: 40
8975993 CATTTGAATG
* *
8976003 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATT
* * *
8976043 ATATCCGGGCTAAGACCCGAAGGAATTCGTGCGAGTTG-TT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATT
* * **
8976083 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATT
* * * * *
8976123 AAATCCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATT
8976163 ATATCC-GGCTAA
1 ATATCCGGGCTAA
8976175 ATTCCGAAGA
Statistics
Matches: 108, Mismatches: 22, Indels: 5
0.80 0.16 0.04
Matches are distributed among these distances:
39 6 0.06
40 100 0.93
41 2 0.02
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATT
Found at i:8976137 original size:80 final size:80
Alignment explanation
Indices: 8976003--8976174 Score: 222
Period size: 80 Copynumber: 2.2 Consensus size: 80
8975993 CATTTGAATG
* * ** *
8976003 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATATCCGGGCTAAGACCCGAAGG-A
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCAAGTGACCAAATCCGGGCTAAGACCCGAAGGCA
*
8976067 ATTCGTGCGAGTTGTT
66 ATT-GTGCGAGTGGTT
* * *
8976083 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAATCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCAAGTGACCAAATCCGGGCTAAGACCCGAAGGCA
**
8976148 ATTGTGCTTGTGGTT
66 ATTGTGCGAGTGGTT
8976163 ATATCC-GGCTAA
1 ATATCCGGGCTAA
8976175 ATTCCGAAGA
Statistics
Matches: 80, Mismatches: 11, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
79 6 0.08
80 70 0.88
81 4 0.05
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTATGCAAGTGACCAAATCCGGGCTAAGACCCGAAGGCA
ATTGTGCGAGTGGTT
Found at i:8981799 original size:40 final size:40
Alignment explanation
Indices: 8981754--8981955 Score: 266
Period size: 40 Copynumber: 5.1 Consensus size: 40
8981744 CTAAGATCCA
*
8981754 AAGGCATTTGTGCGAGTTG-CTATATCTGGGCTAAGTCCCG
1 AAGGCATTTGTGCGAG-TGACTATATCCGGGCTAAGTCCCG
* * *
8981794 AAGGCATTTATGCTAGTGACTATACCCGGGCTAAGTCCCG
1 AAGGCATTTGTGCGAGTGACTATATCCGGGCTAAGTCCCG
* *
8981834 AAGGCATTTGTGCGAGCGACTATATTCGGGCTAAGTCCCG
1 AAGGCATTTGTGCGAGTGACTATATCCGGGCTAAGTCCCG
* * *
8981874 AAGGCATTTATGCTAGTGACTATATCCGGGCTAAGACCCG
1 AAGGCATTTGTGCGAGTGACTATATCCGGGCTAAGTCCCG
* *
8981914 AAGGCATTTGTGCGAGTTG-CGATATCC-GGCTAAATCCCG
1 AAGGCATTTGTGCGAG-TGACTATATCCGGGCTAAGTCCCG
8981953 AAG
1 AAG
8981956 ATACTTGGGT
Statistics
Matches: 141, Mismatches: 19, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
39 15 0.11
40 124 0.88
41 2 0.01
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
AAGGCATTTGTGCGAGTGACTATATCCGGGCTAAGTCCCG
Found at i:8981877 original size:80 final size:80
Alignment explanation
Indices: 8981739--8981955 Score: 305
Period size: 80 Copynumber: 2.7 Consensus size: 80
8981729 CGGATGATAA
* * * *
8981739 CCGGACTAAGATCCAAAGGCATTTGTGCGAGTTGCTATATCTGGGCTAAGTCCCGAAGGCATTTA
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTCGCTATATCTGGGCTAAGTCCCGAAGGCATTTA
8981804 TGCTAGTGACTATAC
66 TGCTAGTGACTATAC
*
8981819 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-CGACTATAT-TCGGGCTAAGTCCCGAAGGCATT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTCG-CTATATCT-GGGCTAAGTCCCGAAGGCATT
*
8981882 TATGCTAGTGACTATAT
64 TATGCTAGTGACTATAC
* * * *
8981899 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCGATATC-CGGCTAAATCCCGAAG
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTCGCTATATCTGGGCTAAGTCCCGAAG
8981956 ATACTTGGGT
Statistics
Matches: 122, Mismatches: 11, Indels: 9
0.86 0.08 0.06
Matches are distributed among these distances:
79 16 0.13
80 105 0.86
81 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (80 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTCGCTATATCTGGGCTAAGTCCCGAAGGCATTTA
TGCTAGTGACTATAC
Found at i:8984151 original size:5 final size:5
Alignment explanation
Indices: 8984141--8984168 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
8984131 AACCTAGCTG
8984141 CTCCT CTCCT CTCCT CTCCT CTCCT CTC
1 CTCCT CTCCT CTCCT CTCCT CTCCT CTC
8984169 TCATTTTTCT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.00, C:0.61, G:0.00, T:0.39
Consensus pattern (5 bp):
CTCCT
Found at i:8987886 original size:38 final size:38
Alignment explanation
Indices: 8987844--8987920 Score: 145
Period size: 38 Copynumber: 2.0 Consensus size: 38
8987834 GATGAAATAG
*
8987844 TAATGACTAGATAGAATATTGCTTGATGGGCTCATCTA
1 TAATGACTAGATAGAATATTGCTTGATGAGCTCATCTA
8987882 TAATGACTAGATAGAATATTGCTTGATGAGCTCATCTA
1 TAATGACTAGATAGAATATTGCTTGATGAGCTCATCTA
8987920 T
1 T
8987921 GTTACTTGAT
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.32, C:0.13, G:0.19, T:0.35
Consensus pattern (38 bp):
TAATGACTAGATAGAATATTGCTTGATGAGCTCATCTA
Found at i:8995398 original size:15 final size:15
Alignment explanation
Indices: 8995378--8995408 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
8995368 TTCTTTAAAT
8995378 CAATCTCGATTCTAA
1 CAATCTCGATTCTAA
8995393 CAATCTCGATTCTAA
1 CAATCTCGATTCTAA
8995408 C
1 C
8995409 CTTTTCTTTC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.32, C:0.29, G:0.06, T:0.32
Consensus pattern (15 bp):
CAATCTCGATTCTAA
Found at i:9008179 original size:46 final size:46
Alignment explanation
Indices: 9008021--9008193 Score: 181
Period size: 46 Copynumber: 3.8 Consensus size: 46
9008011 GTTTGGGCAT
**
9008021 CCGAACTCGTTGAGTTGAGT-CGAGTTCACTTATGGATGCGAA-TG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACAC
* *** * * * * *
9008065 TCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTA-ACTAGGCAT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGATGCGA-ACAC
*
9008112 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACAC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACAC
* *
9008158 CCGAGCTCATTGAGTTGAGTCCGAGTTCACTTATGG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
9008194 GCGGGTTACA
Statistics
Matches: 103, Mismatches: 21, Indels: 8
0.78 0.16 0.06
Matches are distributed among these distances:
44 19 0.18
45 9 0.09
46 47 0.46
47 28 0.27
ACGTcount: A:0.23, C:0.20, G:0.29, T:0.28
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACAC
Found at i:9013577 original size:46 final size:46
Alignment explanation
Indices: 9013527--9013702 Score: 200
Period size: 46 Copynumber: 3.8 Consensus size: 46
9013517 TGTTTGGGCA
9013527 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
*
9013573 TCCGAACTCGTTGAGTTGAGTCCGAGTTCA---A-GAGATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATG-GATGCGAA-T--G
* **
9013618 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACA
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
9013666 CCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
9013703 GTGGGTTACA
Statistics
Matches: 112, Mismatches: 7, Indels: 22
0.79 0.05 0.16
Matches are distributed among these distances:
42 3 0.03
43 6 0.05
45 1 0.01
46 65 0.58
47 29 0.26
50 5 0.04
51 3 0.03
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:9013682 original size:93 final size:93
Alignment explanation
Indices: 9013523--9013695 Score: 292
Period size: 93 Copynumber: 1.9 Consensus size: 93
9013513 AGGATGTTTG
*** *
9013523 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAACTCATTGAG
9013588 TTGAGTCCGAGTTCAAGAGATGTAACTA
66 TTGAGTCCGAGTTCAAGAGATGTAACTA
* *
9013616 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAGCTCATTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAACTCATTGAG
9013681 TTGAGTCCGAGTTCA
66 TTGAGTCCGAGTTCA
9013696 CTTATGGGTG
Statistics
Matches: 74, Mismatches: 6, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAACTCATTGAG
TTGAGTCCGAGTTCAAGAGATGTAACTA
Found at i:9022023 original size:2 final size:2
Alignment explanation
Indices: 9022018--9022049 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
9022008 ACACACACAC
9022018 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
9022050 CGTGCCTTGA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Done.