Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr02 99090824
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 99090824
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 317 characters in sequence are not A, C, G, or T
File 33 of 318
Found at i:9037300 original size:123 final size:123
Alignment explanation
Indices: 9037081--9037419 Score: 588
Period size: 123 Copynumber: 2.8 Consensus size: 123
9037071 GAATTATGTG
* *
9037081 AAATGAAATATAGATGTGTAATGATTATTGACATATGTGTGTATGAGTATTTGAATGGTACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
*
9037146 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTTGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
9037204 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
9037269 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
* * * * *
9037327 AAATGAAATATGGATGTGTAATGATTATTGATTTATGTGTGCATGAGCAATTGAATGATACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
* *
9037392 GCTAAGTCCCGAAGACATTTATGCTAGT
66 GCTAAGTCCCGAAGGCAATTATGCTAGT
9037420 AATTATATTC
Statistics
Matches: 206, Mismatches: 10, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
123 206 1.00
ACGTcount: A:0.30, C:0.11, G:0.25, T:0.34
Consensus pattern (123 bp):
AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
Found at i:9037457 original size:40 final size:40
Alignment explanation
Indices: 9037388--9037631 Score: 292
Period size: 40 Copynumber: 6.1 Consensus size: 40
9037378 TGAATGATAC
* * * * **
9037388 CCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATAT
* * * * *
9037428 TCGGGTTAAGACCCGAAGGCAATTGTGCTAG-TGACTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTG-TTATAT
*
9037468 CCGGGCTAATACCCGAAGGCATTTGTGCAAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATAT
*
9037508 CCGGGCTAATACCCGAAGGCATTTGTGCAAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATAT
* *
9037548 CCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATAT
* * ** *
9037588 CCGGGCTAAGACCCGAGGGCATTCGTGCGTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATAT
9037628 CCGG
1 CCGG
9037632 TTGTATTCCG
Statistics
Matches: 180, Mismatches: 22, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
40 178 0.99
41 2 0.01
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATAT
Found at i:9039438 original size:6 final size:6
Alignment explanation
Indices: 9039422--9039468 Score: 58
Period size: 6 Copynumber: 7.5 Consensus size: 6
9039412 AGCTTTCTCC
* *
9039422 AAAATG GAAATG AAAATG AAAATG AAAATG AGAAATA AGAAATG AAA
1 AAAATG AAAATG AAAATG AAAATG AAAATG A-AAATG A-AAATG AAA
9039469 TCATTTAGAA
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
6 25 0.69
7 11 0.31
ACGTcount: A:0.66, C:0.00, G:0.19, T:0.15
Consensus pattern (6 bp):
AAAATG
Found at i:9043555 original size:16 final size:17
Alignment explanation
Indices: 9043532--9043574 Score: 56
Period size: 16 Copynumber: 2.7 Consensus size: 17
9043522 AATTATATAA
9043532 TTTA-ATAA-AATTTAC
1 TTTATATAATAATTTAC
*
9043547 TTTATATAATTATTTAC
1 TTTATATAATAATTTAC
9043564 -TTATATAATAA
1 TTTATATAATAA
9043575 GTAAATTCAT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
15 4 0.17
16 14 0.58
17 6 0.25
ACGTcount: A:0.44, C:0.05, G:0.00, T:0.51
Consensus pattern (17 bp):
TTTATATAATAATTTAC
Found at i:9051429 original size:93 final size:93
Alignment explanation
Indices: 9051321--9051492 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
9051311 GCCCATAAGT
* * *
9051321 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTTGCATCCATAAGTGAACTCAGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
9051386 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
* *
9051414 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
*
9051479 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
9051493 CAAATATCCT
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:9051488 original size:46 final size:46
Alignment explanation
Indices: 9051313--9051488 Score: 196
Period size: 46 Copynumber: 3.8 Consensus size: 46
9051303 TGTAACCCGC
* * *
9051313 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
* *
9051359 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGG--ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGC-A--T
* *** *
9051405 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
9051452 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
9051489 TGCCCAAATA
Statistics
Matches: 108, Mismatches: 15, Indels: 14
0.79 0.11 0.10
Matches are distributed among these distances:
43 1 0.01
44 2 0.02
46 69 0.64
47 31 0.29
49 4 0.04
50 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:9061955 original size:21 final size:25
Alignment explanation
Indices: 9061908--9061955 Score: 59
Period size: 26 Copynumber: 2.0 Consensus size: 25
9061898 TGAGTATGAG
9061908 AATAATATATATATAGTGATATCATT
1 AATAATATATATATAGTGATA-CATT
9061934 AATAAT-TATA-ATAG-GATA-ATT
1 AATAATATATATATAGTGATACATT
9061955 A
1 A
9061956 TTATATGTAA
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
21 4 0.18
23 4 0.18
24 4 0.18
25 4 0.18
26 6 0.27
ACGTcount: A:0.50, C:0.02, G:0.08, T:0.40
Consensus pattern (25 bp):
AATAATATATATATAGTGATACATT
Found at i:9069425 original size:43 final size:43
Alignment explanation
Indices: 9069372--9069498 Score: 168
Period size: 43 Copynumber: 3.0 Consensus size: 43
9069362 TGAGATATGT
*
9069372 AGCATCCGAGCTCGTTGAGAGGTTCGAGTTCATTATGGATGCG
1 AGCACCCGAGCTCGTTGAGAGGTTCGAGTTCATTATGGATGCG
* * *
9069415 AGCACCCGAGCTCATCGAGAGGTCCGAGTTCATTATGGATGCG
1 AGCACCCGAGCTCGTTGAGAGGTTCGAGTTCATTATGGATGCG
* *
9069458 AGCACCCGAGCTCGATAAGAGG-TCTGAGTTCA-TAGTGGATG
1 AGCACCCGAGCTCGTTGAGAGGTTC-GAGTTCATTA-TGGATG
9069499 TGATTCATGT
Statistics
Matches: 73, Mismatches: 9, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
42 3 0.04
43 70 0.96
ACGTcount: A:0.24, C:0.21, G:0.31, T:0.24
Consensus pattern (43 bp):
AGCACCCGAGCTCGTTGAGAGGTTCGAGTTCATTATGGATGCG
Found at i:9070927 original size:18 final size:19
Alignment explanation
Indices: 9070892--9070928 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
9070882 AGAATTGGCC
9070892 AAATGGGCCGGTATGGGCT
1 AAATGGGCCGGTATGGGCT
*
9070911 AAATGGGCCTG-ATGGGCT
1 AAATGGGCCGGTATGGGCT
9070929 GTTGGGCCCA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 7 0.41
19 10 0.59
ACGTcount: A:0.22, C:0.16, G:0.41, T:0.22
Consensus pattern (19 bp):
AAATGGGCCGGTATGGGCT
Found at i:9071000 original size:22 final size:22
Alignment explanation
Indices: 9070972--9071016 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
9070962 ATGCTATGTG
9070972 TTAGAAAATTTGAATGTGAGCA
1 TTAGAAAATTTGAATGTGAGCA
9070994 TTAGAAAATTTGAATGTGAGCA
1 TTAGAAAATTTGAATGTGAGCA
9071016 T
1 T
9071017 GAGTATAATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.40, C:0.04, G:0.22, T:0.33
Consensus pattern (22 bp):
TTAGAAAATTTGAATGTGAGCA
Found at i:9079308 original size:43 final size:43
Alignment explanation
Indices: 9079255--9079336 Score: 139
Period size: 43 Copynumber: 1.9 Consensus size: 43
9079245 TGAGATATGT
*
9079255 AGCATTCGAGCTCGTTGAGAGGT-TCGAGTTCATTATGGATGAG
1 AGCATCCGAGCTCGTTGAGAGGTCT-GAGTTCATTATGGATGAG
9079298 AGCATCCGAGCTCGTTGAGAGGTCTGAGTTCATTATGGA
1 AGCATCCGAGCTCGTTGAGAGGTCTGAGTTCATTATGGA
9079337 CATGTTACAT
Statistics
Matches: 37, Mismatches: 1, Indels: 2
0.93 0.03 0.05
Matches are distributed among these distances:
43 36 0.97
44 1 0.03
ACGTcount: A:0.23, C:0.16, G:0.32, T:0.29
Consensus pattern (43 bp):
AGCATCCGAGCTCGTTGAGAGGTCTGAGTTCATTATGGATGAG
Found at i:9098052 original size:17 final size:17
Alignment explanation
Indices: 9098030--9098064 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
9098020 TAAATACATC
9098030 TTAGTAGTTGTTGATTA
1 TTAGTAGTTGTTGATTA
9098047 TTAGTAGTTGTTGATTA
1 TTAGTAGTTGTTGATTA
9098064 T
1 T
9098065 ATGTCCAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.23, C:0.00, G:0.23, T:0.54
Consensus pattern (17 bp):
TTAGTAGTTGTTGATTA
Found at i:9102512 original size:35 final size:35
Alignment explanation
Indices: 9102463--9102533 Score: 133
Period size: 35 Copynumber: 2.0 Consensus size: 35
9102453 AATAAGTTAG
*
9102463 TCTCAAGAATGATTCTTTCATAAATCATTAAAACC
1 TCTCAAGAACGATTCTTTCATAAATCATTAAAACC
9102498 TCTCAAGAACGATTCTTTCATAAATCATTAAAACC
1 TCTCAAGAACGATTCTTTCATAAATCATTAAAACC
9102533 T
1 T
9102534 GTCACGAATA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.39, C:0.21, G:0.06, T:0.34
Consensus pattern (35 bp):
TCTCAAGAACGATTCTTTCATAAATCATTAAAACC
Found at i:9108312 original size:2 final size:2
Alignment explanation
Indices: 9108305--9108334 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
9108295 TGTTGAGAAT
9108305 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
9108335 CTCGGTTGTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:9109126 original size:3 final size:3
Alignment explanation
Indices: 9109118--9109203 Score: 172
Period size: 3 Copynumber: 28.7 Consensus size: 3
9109108 ATTGTTATGG
9109118 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
9109166 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
9109204 TAAAAATATA
Statistics
Matches: 83, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 83 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:9111704 original size:60 final size:60
Alignment explanation
Indices: 9111640--9111778 Score: 174
Period size: 60 Copynumber: 2.3 Consensus size: 60
9111630 CCAACTGTGT
* *
9111640 TGATATGGGCAAGGCCCAATATATATC-GA-CCTGTAATAGGGCTACGGCCCAGATTGATAC
1 TGATATGGGCAAGGCCCAATATA-ATCTGATACTGTAA-AGGGCTACGGCCCAGATTAATAC
* * * * *
9111700 TGATATGGGCTAGGCCCAATATACTCTGATACTGTAAGGGGCTATGGCCCAGATTAATAT
1 TGATATGGGCAAGGCCCAATATAATCTGATACTGTAAAGGGCTACGGCCCAGATTAATAC
9111760 TGATATGGGCTAAGGCCCA
1 TGATATGGGC-AAGGCCCA
9111779 GTTAACACTA
Statistics
Matches: 68, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
59 2 0.03
60 53 0.78
61 13 0.19
ACGTcount: A:0.29, C:0.20, G:0.26, T:0.25
Consensus pattern (60 bp):
TGATATGGGCAAGGCCCAATATAATCTGATACTGTAAAGGGCTACGGCCCAGATTAATAC
Found at i:9114224 original size:10 final size:10
Alignment explanation
Indices: 9114209--9114260 Score: 59
Period size: 10 Copynumber: 5.1 Consensus size: 10
9114199 TAAATTTAGG
9114209 ATTTATTTTT
1 ATTTATTTTT
*
9114219 ATTTATCTTT
1 ATTTATTTTT
* *
9114229 AATTATCTTT
1 ATTTATTTTT
*
9114239 ATTTATTTGT
1 ATTTATTTTT
9114249 ATTTATCTTTT
1 ATTTAT-TTTT
9114260 A
1 A
9114261 GAATTTAATT
Statistics
Matches: 35, Mismatches: 6, Indels: 1
0.83 0.14 0.02
Matches are distributed among these distances:
10 31 0.89
11 4 0.11
ACGTcount: A:0.23, C:0.06, G:0.02, T:0.69
Consensus pattern (10 bp):
ATTTATTTTT
Found at i:9115398 original size:14 final size:15
Alignment explanation
Indices: 9115364--9115399 Score: 65
Period size: 15 Copynumber: 2.5 Consensus size: 15
9115354 AGCTAATCGC
9115364 AAGGAAACAAAGCTA
1 AAGGAAACAAAGCTA
9115379 AAGGAAACAAAGCT-
1 AAGGAAACAAAGCTA
9115393 AAGGAAA
1 AAGGAAA
9115400 AAGCAACCAG
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 7 0.33
15 14 0.67
ACGTcount: A:0.61, C:0.11, G:0.22, T:0.06
Consensus pattern (15 bp):
AAGGAAACAAAGCTA
Found at i:9120526 original size:23 final size:23
Alignment explanation
Indices: 9120500--9120545 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
9120490 CATTCTCTTG
*
9120500 TCATACCCATGCCATTACTATGC
1 TCATACCCATGCCATTACCATGC
* * *
9120523 TCATTCTCATGCTATTACCATGC
1 TCATACCCATGCCATTACCATGC
9120546 CAATGTCATG
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.24, C:0.33, G:0.09, T:0.35
Consensus pattern (23 bp):
TCATACCCATGCCATTACCATGC
Found at i:9126482 original size:5 final size:5
Alignment explanation
Indices: 9126472--9126534 Score: 60
Period size: 5 Copynumber: 12.4 Consensus size: 5
9126462 GCAACCCAAT
9126472 TTTTA TTTTA TTTTA TTTTA --TTA TTTTA TTATT- TATTTA TTCATTA
1 TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TT-TTA T-TTTA TT--TTA
*
9126518 CTTTA TTTTA TTTTA TT
1 TTTTA TTTTA TTTTA TT
9126535 ATTTATTACT
Statistics
Matches: 49, Mismatches: 2, Indels: 14
0.75 0.03 0.22
Matches are distributed among these distances:
3 3 0.06
5 38 0.78
6 4 0.08
7 4 0.08
ACGTcount: A:0.22, C:0.03, G:0.00, T:0.75
Consensus pattern (5 bp):
TTTTA
Found at i:9126497 original size:8 final size:8
Alignment explanation
Indices: 9126474--9126549 Score: 59
Period size: 8 Copynumber: 9.2 Consensus size: 8
9126464 AACCCAATTT
9126474 TTATTTTA
1 TTATTTTA
9126482 TTTTATTTTA
1 --TTATTTTA
9126492 TTATTTTA
1 TTATTTTA
9126500 TTA-TTTA
1 TTATTTTA
*
9126507 TT-TATTCA
1 TTAT-TTTA
*
9126515 TTACTTTATT
1 TTA-TTT-TA
9126525 TTATTTTA
1 TTATTTTA
9126533 TTA-TTTA
1 TTATTTTA
*
9126540 TTACTTTA
1 TTATTTTA
9126548 TT
1 TT
9126550 TTGTTTGGGT
Statistics
Matches: 56, Mismatches: 4, Indels: 14
0.76 0.05 0.19
Matches are distributed among these distances:
7 13 0.23
8 26 0.46
9 5 0.09
10 12 0.21
ACGTcount: A:0.24, C:0.04, G:0.00, T:0.72
Consensus pattern (8 bp):
TTATTTTA
Found at i:9126509 original size:25 final size:24
Alignment explanation
Indices: 9126473--9126551 Score: 85
Period size: 25 Copynumber: 3.3 Consensus size: 24
9126463 CAACCCAATT
*
9126473 TTTA-TTTTATTTTATTTTATTAT
1 TTTATTTTTATTTTATTTTATTAC
*
9126496 TTTATTATTTA-TTTA-TTCATTAC
1 TTTATT-TTTATTTTATTTTATTAC
9126519 TTTA-TTTTATTTTATTATTTATTAC
1 TTTATTTTTATTTTA-T-TTTATTAC
9126544 TTTATTTT
1 TTTATTTT
9126552 GTTTGGGTGA
Statistics
Matches: 46, Mismatches: 3, Indels: 11
0.77 0.05 0.18
Matches are distributed among these distances:
21 4 0.09
22 5 0.11
23 14 0.30
24 5 0.11
25 15 0.33
26 3 0.07
ACGTcount: A:0.23, C:0.04, G:0.00, T:0.73
Consensus pattern (24 bp):
TTTATTTTTATTTTATTTTATTAC
Found at i:9128386 original size:10 final size:9
Alignment explanation
Indices: 9128362--9128404 Score: 50
Period size: 10 Copynumber: 4.4 Consensus size: 9
9128352 TAAATTTAGG
9128362 ATTTATTTT
1 ATTTATTTT
9128371 ATTTATCTTT
1 ATTTAT-TTT
*
9128381 AATTATATTT
1 ATTTAT-TTT
9128391 ATTTATTTGT
1 ATTTATTT-T
9128401 ATTT
1 ATTT
9128405 CTCTTTTAGA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
9 8 0.28
10 21 0.72
ACGTcount: A:0.26, C:0.02, G:0.02, T:0.70
Consensus pattern (9 bp):
ATTTATTTT
Found at i:9137439 original size:26 final size:25
Alignment explanation
Indices: 9137408--9137477 Score: 99
Period size: 24 Copynumber: 2.8 Consensus size: 25
9137398 GTCATGGTCG
9137408 GTAAGCTCTTACTGAGCTGATAAACA
1 GTAAGCTCTTACTGAGCTGA-AAACA
*
9137434 GTAAGCTC-TATTGAGCTGAAAACA
1 GTAAGCTCTTACTGAGCTGAAAACA
*
9137458 GTAAGCTCTTTC-GAGCTGAA
1 GTAAGCTCTTACTGAGCTGAA
9137478 TCGGTAAGCT
Statistics
Matches: 40, Mismatches: 3, Indels: 4
0.85 0.06 0.09
Matches are distributed among these distances:
24 21 0.52
25 11 0.28
26 8 0.20
ACGTcount: A:0.33, C:0.19, G:0.21, T:0.27
Consensus pattern (25 bp):
GTAAGCTCTTACTGAGCTGAAAACA
Found at i:9141753 original size:42 final size:42
Alignment explanation
Indices: 9141665--9141799 Score: 159
Period size: 44 Copynumber: 3.1 Consensus size: 42
9141655 AACGTCCCTC
* *
9141665 CTTACATGTAATCAAATATCGATGCC-ACTGTCCCAAACA-GGAT
1 CTTACACGAAATCAAATA-CGATGCCGA-TGTCCCAAACATGG-T
*
9141708 CTTACACGAAATCAAATACGATGCCGATGTCCCAGACATGGT
1 CTTACACGAAATCAAATACGATGCCGATGTCCCAAACATGGT
*
9141750 CTTACACGTAAATCTCAAAT-CGATGCCGATGTCCCAAACATTGT
1 CTTACACG-AAA--TCAAATACGATGCCGATGTCCCAAACATGGT
9141794 CTTACA
1 CTTACA
9141800 TATGTTGCTC
Statistics
Matches: 82, Mismatches: 5, Indels: 9
0.85 0.05 0.09
Matches are distributed among these distances:
42 26 0.32
43 22 0.27
44 28 0.34
45 6 0.07
ACGTcount: A:0.33, C:0.27, G:0.15, T:0.25
Consensus pattern (42 bp):
CTTACACGAAATCAAATACGATGCCGATGTCCCAAACATGGT
Found at i:9142422 original size:20 final size:20
Alignment explanation
Indices: 9142397--9142437 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
9142387 TTCATAAAAC
9142397 CCATATTATCAACAATGACA
1 CCATATTATCAACAATGACA
9142417 CCATATTATCAACAATGACA
1 CCATATTATCAACAATGACA
9142437 C
1 C
9142438 ATCTTAAAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.44, C:0.27, G:0.05, T:0.24
Consensus pattern (20 bp):
CCATATTATCAACAATGACA
Found at i:9144846 original size:92 final size:92
Alignment explanation
Indices: 9144720--9144895 Score: 316
Period size: 92 Copynumber: 1.9 Consensus size: 92
9144710 GTCCCCCAGT
* * *
9144720 TGTTTATATCAATCGGGAGCTAAAACCTTGAAATAATATATATATGATATACATCCAAAAGCCTA
1 TGTTTATATCAATCAGGAGCTAAAACCTTGAAATAATATATATATCAAATACATCCAAAAGCCTA
9144785 TGATTAGAACTAACCATTAAATTAGAG
66 TGATTAGAACTAACCATTAAATTAGAG
*
9144812 TGTTTATATCAATCAGGAGTTAAAACCTTGAAATAATATATATATCAAATACATCCAAAAGCCTA
1 TGTTTATATCAATCAGGAGCTAAAACCTTGAAATAATATATATATCAAATACATCCAAAAGCCTA
9144877 TGATTAGAACTAACCATTA
66 TGATTAGAACTAACCATTA
9144896 CAAAACACGA
Statistics
Matches: 80, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
92 80 1.00
ACGTcount: A:0.43, C:0.15, G:0.11, T:0.31
Consensus pattern (92 bp):
TGTTTATATCAATCAGGAGCTAAAACCTTGAAATAATATATATATCAAATACATCCAAAAGCCTA
TGATTAGAACTAACCATTAAATTAGAG
Found at i:9146201 original size:26 final size:26
Alignment explanation
Indices: 9146172--9146225 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
9146162 ACATTACGAG
9146172 TAAAAAATAATTAAAAACACTTTTTA
1 TAAAAAATAATTAAAAACACTTTTTA
9146198 TAAAAAATAATTAAAAACACTTTTTA
1 TAAAAAATAATTAAAAACACTTTTTA
9146224 TA
1 TA
9146226 TGGAGATATT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.57, C:0.07, G:0.00, T:0.35
Consensus pattern (26 bp):
TAAAAAATAATTAAAAACACTTTTTA
Found at i:9153014 original size:29 final size:30
Alignment explanation
Indices: 9152982--9153038 Score: 80
Period size: 29 Copynumber: 1.9 Consensus size: 30
9152972 TGGTTTAATA
*
9152982 TGCAATTGTATATATGA-ACTTTGATTTTG
1 TGCAATTGTATACATGAGACTTTGATTTTG
* *
9153011 TGCAATTTTATACATGAGATTTTGATTT
1 TGCAATTGTATACATGAGACTTTGATTT
9153039 GATCAAATTC
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 15 0.62
30 9 0.38
ACGTcount: A:0.28, C:0.07, G:0.16, T:0.49
Consensus pattern (30 bp):
TGCAATTGTATACATGAGACTTTGATTTTG
Found at i:9153237 original size:31 final size:31
Alignment explanation
Indices: 9153163--9153237 Score: 87
Period size: 31 Copynumber: 2.4 Consensus size: 31
9153153 ATTTATCTAA
* * *
9153163 ATGTTTATGATTAAATAAAAATTAAAGTTTC
1 ATGTTTATAATTAAACAAAAATTAAAATTTC
* * * *
9153194 AAGTATACAATTAAACAATAATTAAAATTTC
1 ATGTTTATAATTAAACAAAAATTAAAATTTC
9153225 ATGTTTATAATTA
1 ATGTTTATAATTA
9153238 CATCAAATTA
Statistics
Matches: 34, Mismatches: 10, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
31 34 1.00
ACGTcount: A:0.48, C:0.05, G:0.07, T:0.40
Consensus pattern (31 bp):
ATGTTTATAATTAAACAAAAATTAAAATTTC
Found at i:9154958 original size:20 final size:19
Alignment explanation
Indices: 9154933--9154970 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
9154923 TTACATTAAA
*
9154933 TATTATTTATATATTATTTG
1 TATTATCTATA-ATTATTTG
9154953 TATTATCTATAATTATTT
1 TATTATCTATAATTATTT
9154971 TTAATTGATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 7 0.41
20 10 0.59
ACGTcount: A:0.32, C:0.03, G:0.03, T:0.63
Consensus pattern (19 bp):
TATTATCTATAATTATTTG
Found at i:9155690 original size:34 final size:33
Alignment explanation
Indices: 9155626--9155692 Score: 89
Period size: 34 Copynumber: 2.0 Consensus size: 33
9155616 TATATATTAA
* *
9155626 TTTTTCTATTTTATTCAATAATTTATCTTTATT
1 TTTTTCTATTTTATTAAATAATTTACCTTTATT
* *
9155659 TTTTTCTATTTTTATTAAATATTTTCCCTTTATT
1 TTTTTCTA-TTTTATTAAATAATTTACCTTTATT
9155693 CTTTGAGTAA
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
33 8 0.28
34 21 0.72
ACGTcount: A:0.22, C:0.10, G:0.00, T:0.67
Consensus pattern (33 bp):
TTTTTCTATTTTATTAAATAATTTACCTTTATT
Found at i:9155837 original size:17 final size:17
Alignment explanation
Indices: 9155817--9155849 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
9155807 CTTTTTGAAA
9155817 TTTAAAATATTGATTTT
1 TTTAAAATATTGATTTT
*
9155834 TTTAATATATTGATTT
1 TTTAAAATATTGATTT
9155850 GTTGATTAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.33, C:0.00, G:0.06, T:0.61
Consensus pattern (17 bp):
TTTAAAATATTGATTTT
Found at i:9159118 original size:13 final size:14
Alignment explanation
Indices: 9159100--9159135 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 14
9159090 CCATCTCATA
9159100 TCTCAATTTCAA-T
1 TCTCAATTTCAATT
9159113 TCTCAA-TTCAATT
1 TCTCAATTTCAATT
9159126 TCTC-ATTTCA
1 TCTCAATTTCA
9159136 TTCCAATAGC
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
12 6 0.29
13 15 0.71
ACGTcount: A:0.28, C:0.25, G:0.00, T:0.47
Consensus pattern (14 bp):
TCTCAATTTCAATT
Found at i:9159790 original size:15 final size:15
Alignment explanation
Indices: 9159766--9159818 Score: 70
Period size: 15 Copynumber: 3.5 Consensus size: 15
9159756 ATATATATAT
*
9159766 TATAATTTCAATCAA
1 TATAAATTCAATCAA
9159781 TATAAATTCAATCAA
1 TATAAATTCAATCAA
* * *
9159796 AATGATTTCAATCAA
1 TATAAATTCAATCAA
9159811 TATAAATT
1 TATAAATT
9159819 TGATAAATTC
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
15 31 1.00
ACGTcount: A:0.49, C:0.11, G:0.02, T:0.38
Consensus pattern (15 bp):
TATAAATTCAATCAA
Found at i:9159967 original size:10 final size:10
Alignment explanation
Indices: 9159952--9159977 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
9159942 ACAAACCGTA
9159952 TTTTCCAAGC
1 TTTTCCAAGC
9159962 TTTTCCAAGC
1 TTTTCCAAGC
9159972 TTTTCC
1 TTTTCC
9159978 TCGTCGACTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.15, C:0.31, G:0.08, T:0.46
Consensus pattern (10 bp):
TTTTCCAAGC
Found at i:9160699 original size:19 final size:19
Alignment explanation
Indices: 9160654--9160699 Score: 60
Period size: 19 Copynumber: 2.5 Consensus size: 19
9160644 AATACTTATT
9160654 TATATTT-ATACATGTGTA
1 TATATTTAATACATGTGTA
9160672 TAT-TATTAATACATGTGTA
1 TATAT-TTAATACATGTGTA
*
9160691 TCTATTTAA
1 TATATTTAA
9160700 AACCATACAT
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
17 1 0.04
18 5 0.21
19 17 0.71
20 1 0.04
ACGTcount: A:0.35, C:0.07, G:0.09, T:0.50
Consensus pattern (19 bp):
TATATTTAATACATGTGTA
Found at i:9162462 original size:28 final size:28
Alignment explanation
Indices: 9162431--9162492 Score: 88
Period size: 28 Copynumber: 2.2 Consensus size: 28
9162421 AAAGTAAGCA
* *
9162431 ATTTTCCAGAAATCAATTTCCGAAAACG
1 ATTTTCCAAAAATCAATTTCCGAAAACC
* *
9162459 ATTTTCCAAAAATCATTTTCCGATAACC
1 ATTTTCCAAAAATCAATTTCCGAAAACC
9162487 ATTTTC
1 ATTTTC
9162493 AGTCAAACAA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.35, C:0.23, G:0.06, T:0.35
Consensus pattern (28 bp):
ATTTTCCAAAAATCAATTTCCGAAAACC
Found at i:9162464 original size:14 final size:13
Alignment explanation
Indices: 9162431--9162492 Score: 52
Period size: 14 Copynumber: 4.5 Consensus size: 13
9162421 AAAGTAAGCA
*
9162431 ATTTTCCAGAAATC
1 ATTTTCC-GAAAAC
*
9162445 AATTTCCGAAAAC
1 ATTTTCCGAAAAC
*
9162458 GATTTTCCAAAAATC
1 -ATTTTCCGAAAA-C
*
9162473 ATTTTCCGATAACC
1 ATTTTCCGA-AAAC
9162487 ATTTTC
1 ATTTTC
9162493 AGTCAAACAA
Statistics
Matches: 39, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
13 5 0.13
14 31 0.79
15 3 0.08
ACGTcount: A:0.35, C:0.23, G:0.06, T:0.35
Consensus pattern (13 bp):
ATTTTCCGAAAAC
Found at i:9168631 original size:17 final size:17
Alignment explanation
Indices: 9168599--9168631 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
9168589 GATAGATGGG
*
9168599 TTTGATTTGGGGAAAAT
1 TTTGATTTGGGAAAAAT
9168616 TTTGATTTGGGAAAAA
1 TTTGATTTGGGAAAAA
9168632 ATAAGGGGTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.33, C:0.00, G:0.27, T:0.39
Consensus pattern (17 bp):
TTTGATTTGGGAAAAAT
Found at i:9168805 original size:40 final size:41
Alignment explanation
Indices: 9168761--9168837 Score: 113
Period size: 41 Copynumber: 1.9 Consensus size: 41
9168751 TTTTGCAGCA
9168761 TTTTTCAAAAAAGC-GC-ACTAATTCTCGATCTTTAGCGGCG
1 TTTTTCAAAAAA-CTGCTACTAATTCTCGATCTTTAGCGGCG
**
9168801 TTTTTCAAAAAACTGCTGTTAATTCTCGATCTTTAGC
1 TTTTTCAAAAAACTGCTACTAATTCTCGATCTTTAGC
9168838 ACCAATTCTT
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
39 1 0.03
40 14 0.42
41 18 0.55
ACGTcount: A:0.27, C:0.21, G:0.14, T:0.38
Consensus pattern (41 bp):
TTTTTCAAAAAACTGCTACTAATTCTCGATCTTTAGCGGCG
Found at i:9168846 original size:20 final size:20
Alignment explanation
Indices: 9168821--9168858 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
9168811 AACTGCTGTT
9168821 AATTCTCGATCTTTAGCACC
1 AATTCTCGATCTTTAGCACC
*
9168841 AATTCTTGATCTTTAGCA
1 AATTCTCGATCTTTAGCA
9168859 GCGTTTTTCA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.26, C:0.24, G:0.11, T:0.39
Consensus pattern (20 bp):
AATTCTCGATCTTTAGCACC
Found at i:9169131 original size:22 final size:22
Alignment explanation
Indices: 9169106--9169147 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
9169096 AAATGAAACC
9169106 AAACCCTAAACCCTAAATATTT
1 AAACCCTAAACCCTAAATATTT
*
9169128 AAACCCTAAACCCTATATAT
1 AAACCCTAAACCCTAAATAT
9169148 ATATATATAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.45, C:0.29, G:0.00, T:0.26
Consensus pattern (22 bp):
AAACCCTAAACCCTAAATATTT
Found at i:9169292 original size:22 final size:21
Alignment explanation
Indices: 9169246--9169314 Score: 68
Period size: 22 Copynumber: 3.2 Consensus size: 21
9169236 ATCAATAACC
*
9169246 CTAACCATTAAACCCTAATAC-
1 CTAACCTTTAAACCCTAA-ACA
*
9169267 CTAACCTTTAAAACCATAAACA
1 CTAACCTTT-AAACCCTAAACA
**
9169289 CTAAGATCTTAAACCCTAAACA
1 CTAACCT-TTAAACCCTAAACA
9169311 CTAA
1 CTAA
9169315 ACCCCAAACA
Statistics
Matches: 40, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
21 10 0.25
22 28 0.70
23 2 0.05
ACGTcount: A:0.46, C:0.29, G:0.01, T:0.23
Consensus pattern (21 bp):
CTAACCTTTAAACCCTAAACA
Found at i:9169436 original size:22 final size:23
Alignment explanation
Indices: 9169390--9169436 Score: 69
Period size: 22 Copynumber: 2.1 Consensus size: 23
9169380 TTAACATACT
*
9169390 AACCACTAAACCCTAAAACATAA
1 AACCACTAAACCCTAAAACAAAA
*
9169413 AACC-CTAAACCCTAAACCAAAA
1 AACCACTAAACCCTAAAACAAAA
9169435 AA
1 AA
9169437 AATAAATTTA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 18 0.82
23 4 0.18
ACGTcount: A:0.57, C:0.32, G:0.00, T:0.11
Consensus pattern (23 bp):
AACCACTAAACCCTAAAACAAAA
Found at i:9169828 original size:18 final size:18
Alignment explanation
Indices: 9169792--9169826 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
9169782 AAAATCAGTT
*
9169792 TCAAATATCAAAATAAAA
1 TCAAATATCAAAAAAAAA
9169810 TCAAAT-TCAAAAAAAAA
1 TCAAATATCAAAAAAAAA
9169827 ATAATATGAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 10 0.62
18 6 0.38
ACGTcount: A:0.69, C:0.11, G:0.00, T:0.20
Consensus pattern (18 bp):
TCAAATATCAAAAAAAAA
Found at i:9169935 original size:41 final size:41
Alignment explanation
Indices: 9169868--9170120 Score: 335
Period size: 41 Copynumber: 6.2 Consensus size: 41
9169858 AACGAGTGTC
* *
9169868 GGCGTTTGGACCAGAAATGCCGCTATTGCTCAGTTTTTAGT
1 GGCGTTTGGACCAAAAACGCCGCTATTGCTCAGTTTTTAGT
* ** * *
9169909 AGCGTTTGGACCAAAAACGCTACTATTGCTTAGTTTTTTGT
1 GGCGTTTGGACCAAAAACGCCGCTATTGCTCAGTTTTTAGT
* * * *
9169950 AGCGTTTGGACCAAAAAAGCCGCTATTGTTCAATTTTTAGT
1 GGCGTTTGGACCAAAAACGCCGCTATTGCTCAGTTTTTAGT
* * *
9169991 GGCATTTGGACCAGAAACGTCGCTATTGCTCAGTTTTTAGT
1 GGCGTTTGGACCAAAAACGCCGCTATTGCTCAGTTTTTAGT
* * *
9170032 GGCGTTTGGACCAAAAACGCCGCTATTGCTCTGTTTTAAGC
1 GGCGTTTGGACCAAAAACGCCGCTATTGCTCAGTTTTTAGT
* *
9170073 GGCGTTTGGACCAGAAACACCGCTATTGCTCAGTTTTTAGT
1 GGCGTTTGGACCAAAAACGCCGCTATTGCTCAGTTTTTAGT
9170114 GGCGTTT
1 GGCGTTT
9170121 TCTTGCAAAC
Statistics
Matches: 180, Mismatches: 32, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
41 180 1.00
ACGTcount: A:0.23, C:0.20, G:0.24, T:0.34
Consensus pattern (41 bp):
GGCGTTTGGACCAAAAACGCCGCTATTGCTCAGTTTTTAGT
Found at i:9176821 original size:40 final size:40
Alignment explanation
Indices: 9176754--9176958 Score: 342
Period size: 40 Copynumber: 5.2 Consensus size: 40
9176744 CCTTCGGAGT
* * *
9176754 TTAG-CCGGATATAGCT-ACTAGCTCAAATGCCTTTGGGAC
1 TTAGCCCGGATATAG-TAACTCGCACAAATGCCTTCGGGAC
*
9176793 TTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
*
9176833 TTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
9176873 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
9176913 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
9176953 TTAGCC
1 TTAGCC
9176959 ATGCACAATT
Statistics
Matches: 159, Mismatches: 5, Indels: 3
0.95 0.03 0.02
Matches are distributed among these distances:
39 5 0.03
40 154 0.97
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
Found at i:9180098 original size:20 final size:20
Alignment explanation
Indices: 9180070--9180118 Score: 89
Period size: 20 Copynumber: 2.5 Consensus size: 20
9180060 AATGAGCTTC
*
9180070 GTTCAGAATCATCGAAATAA
1 GTTCTGAATCATCGAAATAA
9180090 GTTCTGAATCATCGAAATAA
1 GTTCTGAATCATCGAAATAA
9180110 GTTCTGAAT
1 GTTCTGAAT
9180119 TTCTTGGAAC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.39, C:0.14, G:0.16, T:0.31
Consensus pattern (20 bp):
GTTCTGAATCATCGAAATAA
Found at i:9184985 original size:40 final size:40
Alignment explanation
Indices: 9184941--9185240 Score: 523
Period size: 40 Copynumber: 7.5 Consensus size: 40
9184931 GCTACTAGCT
9184941 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
9184981 CAAATGCCTTCGGGACTTAGCTCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
9185021 CAAATGCCTTCGGGACTTAGCTCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
9185061 CAAATGCCTTCGGGACTTAGCTCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* *
9185101 CAAATGCCTT-GGGACTTAGCCC-GATATAGTAACTTGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
9185139 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
9185179 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
9185219 CAAATGCCTTCGGGACTTAGCC
1 CAAATGCCTTCGGGACTTAGCC
9185241 ATGCACAATT
Statistics
Matches: 253, Mismatches: 5, Indels: 4
0.97 0.02 0.02
Matches are distributed among these distances:
38 24 0.09
39 23 0.09
40 206 0.81
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:9185197 original size:158 final size:160
Alignment explanation
Indices: 9184941--9185239 Score: 530
Period size: 158 Copynumber: 1.9 Consensus size: 160
9184931 GCTACTAGCT
* *
9184941 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCTCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
* * *
9185006 TTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCTCGGTTATAGTAACTCGCACAAATGCCTT
66 ATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTT
9185071 CGGGACTTAGCTCGGTTATAGTAACTCGCA
131 CGGGACTTAGCTCGGTTATAGTAACTCGCA
*
9185101 CAAATGCCTT-GGGACTTAGCCC-GATATAGTAACTTGCACAAATGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
9185164 ATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTT
66 ATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTT
9185229 CGGGACTTAGC
131 CGGGACTTAGC
9185240 CATGCACAAT
Statistics
Matches: 133, Mismatches: 6, Indels: 2
0.94 0.04 0.01
Matches are distributed among these distances:
158 111 0.83
159 12 0.09
160 10 0.08
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.25
Consensus pattern (160 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
ATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTT
CGGGACTTAGCTCGGTTATAGTAACTCGCA
Found at i:9188297 original size:27 final size:27
Alignment explanation
Indices: 9188267--9188466 Score: 267
Period size: 27 Copynumber: 7.4 Consensus size: 27
9188257 TGGATAAGTT
*
9188267 GTAGAATTACCAAAATACCCCTGTAAG
1 GTAGAATTACCGAAATACCCCTGTAAG
9188294 GTAGAATTACCGAAATACCCCTGTAAG
1 GTAGAATTACCGAAATACCCCTGTAAG
*
9188321 GTAGAATTACCGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAAG
**
9188348 GTAGAATTATTGAAATACCCCTGT-AG
1 GTAGAATTACCGAAATACCCCTGTAAG
*
9188374 GATAGAATTACCGAAATACCCTTGTAAG
1 G-TAGAATTACCGAAATACCCCTGTAAG
* * *
9188402 GTAGAAATACCGAAATTCCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAAG
* * **
9188429 GTAGAATTACCGAGATACCCTTGTGGG
1 GTAGAATTACCGAAATACCCCTGTAAG
*
9188456 GTAAAATTACC
1 GTAGAATTACC
9188467 ATTTTGCCCC
Statistics
Matches: 153, Mismatches: 18, Indels: 4
0.87 0.10 0.02
Matches are distributed among these distances:
26 2 0.01
27 148 0.97
28 3 0.02
ACGTcount: A:0.35, C:0.20, G:0.20, T:0.24
Consensus pattern (27 bp):
GTAGAATTACCGAAATACCCCTGTAAG
Found at i:9196173 original size:40 final size:40
Alignment explanation
Indices: 9196128--9196294 Score: 158
Period size: 40 Copynumber: 4.2 Consensus size: 40
9196118 CGGAATATAA
*
9196128 CCGGATATAACCA-TGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACT-AGCACAAATGCCTTCGGGTCTTAGC
* ** * *
9196168 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
* * * *
9196208 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
*** * * * *
9196248 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
9196287 CCGGATAT
1 CCGGATAT
9196295 CATTCAATTT
Statistics
Matches: 103, Mismatches: 23, Indels: 3
0.80 0.18 0.02
Matches are distributed among these distances:
39 13 0.13
40 89 0.86
41 1 0.01
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:9204175 original size:40 final size:40
Alignment explanation
Indices: 9204130--9204299 Score: 171
Period size: 40 Copynumber: 4.2 Consensus size: 40
9204120 CGGAATATAA
* * *
9204130 CCGGATATAACCA-TGTGCTCAAATGCCTTCGGGTCTTTGC
1 CCGGATATAACCACT-CGCACAAATGCCTTCGGGTCTTAGC
* ** *
9204170 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTCGCACAAATGCCTTCGGGTCTTAGC
** ** *
9204210 CCGGATGGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTCGCACAAATGCCTTCGGGTCTTAGC
* * * * *
9204250 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTCGCACAAATGCCTTCGGGTCTTAGC
9204290 CCGGATATAA
1 CCGGATATAA
9204300 TTTCCAGCAT
Statistics
Matches: 111, Mismatches: 18, Indels: 2
0.85 0.14 0.02
Matches are distributed among these distances:
40 110 0.99
41 1 0.01
ACGTcount: A:0.22, C:0.28, G:0.25, T:0.25
Consensus pattern (40 bp):
CCGGATATAACCACTCGCACAAATGCCTTCGGGTCTTAGC
Found at i:9211241 original size:20 final size:20
Alignment explanation
Indices: 9211216--9211277 Score: 69
Period size: 20 Copynumber: 3.3 Consensus size: 20
9211206 CCAATACATT
9211216 TCACATAGCATATATTGAGC
1 TCACATAGCATATATTGAGC
** *
9211236 TCACATCTCATACATT----
1 TCACATAGCATATATTGAGC
9211252 TCACATAGCATATATTGAGC
1 TCACATAGCATATATTGAGC
9211272 TCACAT
1 TCACAT
9211278 CTCATACTTT
Statistics
Matches: 32, Mismatches: 6, Indels: 8
0.70 0.13 0.17
Matches are distributed among these distances:
16 13 0.41
20 19 0.59
ACGTcount: A:0.34, C:0.24, G:0.10, T:0.32
Consensus pattern (20 bp):
TCACATAGCATATATTGAGC
Found at i:9211256 original size:36 final size:36
Alignment explanation
Indices: 9211209--9211289 Score: 153
Period size: 36 Copynumber: 2.2 Consensus size: 36
9211199 TCACTAGCCA
9211209 ATACATTTCACATAGCATATATTGAGCTCACATCTC
1 ATACATTTCACATAGCATATATTGAGCTCACATCTC
9211245 ATACATTTCACATAGCATATATTGAGCTCACATCTC
1 ATACATTTCACATAGCATATATTGAGCTCACATCTC
*
9211281 ATACTTTTC
1 ATACATTTC
9211290 TCATCTAACT
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
36 44 1.00
ACGTcount: A:0.32, C:0.25, G:0.07, T:0.36
Consensus pattern (36 bp):
ATACATTTCACATAGCATATATTGAGCTCACATCTC
Found at i:9211575 original size:46 final size:46
Alignment explanation
Indices: 9211519--9211687 Score: 182
Period size: 46 Copynumber: 3.6 Consensus size: 46
9211509 ATCTTGTAGC
*
9211519 TGATGCATGTCCTAGACATGTCTTACACTGGCT-TATGTCACGAGGT
1 TGATGCATGTCCCAGACATGTCTTACACTGGCTCTA-GTCACGAGGT
* * * * *
9211565 TGATGCATGTCCCAGACATGTCTTACACTAGCTCTCGTCTCAATGT
1 TGATGCATGTCCCAGACATGTCTTACACTGGCTCTAGTCACGAGGT
* * * *
9211611 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCA-TAATGTGGCT
1 TGATG-CATGTCCCAGACAT-GTCTTACACTGGCTCT-AGTCACGAGG-T
9211660 T-ATGCATGTCCCAGACATGTCTTACACT
1 TGATGCATGTCCCAGACATGTCTTACACT
9211688 AGCACAAATG
Statistics
Matches: 102, Mismatches: 16, Indels: 10
0.80 0.12 0.08
Matches are distributed among these distances:
46 52 0.51
47 29 0.28
48 20 0.20
49 1 0.01
ACGTcount: A:0.22, C:0.27, G:0.20, T:0.31
Consensus pattern (46 bp):
TGATGCATGTCCCAGACATGTCTTACACTGGCTCTAGTCACGAGGT
Found at i:9211637 original size:94 final size:92
Alignment explanation
Indices: 9211520--9211690 Score: 240
Period size: 94 Copynumber: 1.8 Consensus size: 92
9211510 TCTTGTAGCT
* *
9211520 GATGCATGTCCTAGACATGTCTTACACTGGCT-T-ATGTCACGAGG-TTGATGCATGTCCCAGAC
1 GATGCATGTCCCAGACATGTCTTACACTGGCTCTCA--TAACGAGGCTT-ATGCATGTCCCAGAC
9211582 ATGTCTTACACTAGCTCTCGTCTCAATGTC
63 ATGTCTTACACTAGCTCTCGTCTCAATGTC
* *
9211612 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCTTATGCATGTCCCAGACA
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGCTCTCATAACGAGGCTTATGCATGTCCCAGACA
9211677 TGTCTTACACTAGC
64 TGTCTTACACTAGC
9211691 ACAAATGACC
Statistics
Matches: 70, Mismatches: 4, Indels: 8
0.85 0.05 0.10
Matches are distributed among these distances:
92 4 0.06
93 13 0.19
94 49 0.70
95 3 0.04
96 1 0.01
ACGTcount: A:0.22, C:0.27, G:0.20, T:0.30
Consensus pattern (92 bp):
GATGCATGTCCCAGACATGTCTTACACTGGCTCTCATAACGAGGCTTATGCATGTCCCAGACATG
TCTTACACTAGCTCTCGTCTCAATGTC
Found at i:9211676 original size:140 final size:140
Alignment explanation
Indices: 9211429--9211687 Score: 344
Period size: 140 Copynumber: 1.8 Consensus size: 140
9211419 AGGCTAAGAC
* **
9211429 CATGTCCCAGACATGGTCTTACATTAGCTCTCACATATCTGTGCCGATGCCATATCCCAGACAGG
1 CATGTCCCAGACATGGTCTTACACTAGCTCT-ACATATCAATGCCGATGCCATATCCCAGACAGG
*
9211494 GTCTTACACTGACACATCTTGTAGCTGATGCATGTCCTAGACATGTCTTACACTGGCTTATGTCA
65 GTCTTACACTGACACATCTTGTAGCTGATGCATGTCCCAGACATGTCTTACACTGGCTTATGTCA
9211559 CGAGGTTGATG
130 CGAGGTTGATG
* * * * *
9211570 CATGTCCCAGACAT-GTCTTACACTAGCTCT-CGTCTCAATGTCGATGCCATGTCCCAGACATGG
1 CATGTCCCAGACATGGTCTTACACTAGCTCTACATATCAATGCCGATGCCATATCCCAGACAGGG
* * * *
9211633 TCTTACACTGGCTC-TCATAATGTGGCTTATGCATGTCCCAGACATGTCTTACACT
66 TCTTACACTGACACATC-T--TGTAGCTGATGCATGTCCCAGACATGTCTTACACT
9211688 AGCACAAATG
Statistics
Matches: 102, Mismatches: 13, Indels: 7
0.84 0.11 0.06
Matches are distributed among these distances:
137 2 0.02
138 39 0.38
140 47 0.46
141 14 0.14
ACGTcount: A:0.23, C:0.28, G:0.19, T:0.30
Consensus pattern (140 bp):
CATGTCCCAGACATGGTCTTACACTAGCTCTACATATCAATGCCGATGCCATATCCCAGACAGGG
TCTTACACTGACACATCTTGTAGCTGATGCATGTCCCAGACATGTCTTACACTGGCTTATGTCAC
GAGGTTGATG
Found at i:9217819 original size:27 final size:27
Alignment explanation
Indices: 9217789--9218001 Score: 248
Period size: 27 Copynumber: 7.9 Consensus size: 27
9217779 CCTTAATCGA
* *
9217789 TAAAATGACTATTTTACCCTTATGAGG
1 TAAAATGACTGTTTTGCCCTTATGAGG
* * *
9217816 TAAAATAACTATTTTGCCCTTACGAGG
1 TAAAATGACTGTTTTGCCCTTATGAGG
* * *
9217843 TAAAATGATTGTTTTGCCCTAAGGAGG
1 TAAAATGACTGTTTTGCCCTTATGAGG
* *
9217870 TAAAATGATTGTTTTGCCCTTATGATG
1 TAAAATGACTGTTTTGCCCTTATGAGG
9217897 TAAAATGACTGTTTTGCCCTTATGAGG
1 TAAAATGACTGTTTTGCCCTTATGAGG
* *
9217924 TAAAATGACTGTTTCGCCCTTATAAGG
1 TAAAATGACTGTTTTGCCCTTATGAGG
* * *
9217951 TAAAATGACTATTTTTCCCTT-TTATGG
1 TAAAATGACTGTTTTGCCCTTATGA-GG
* * *
9217978 TAAGATGACTGTTTTACCCCTATG
1 TAAAATGACTGTTTTGCCCTTATG
9218002 TGATGTATGT
Statistics
Matches: 160, Mismatches: 24, Indels: 3
0.86 0.13 0.02
Matches are distributed among these distances:
26 2 0.01
27 157 0.98
28 1 0.01
ACGTcount: A:0.29, C:0.15, G:0.18, T:0.38
Consensus pattern (27 bp):
TAAAATGACTGTTTTGCCCTTATGAGG
Found at i:9227408 original size:54 final size:54
Alignment explanation
Indices: 9227242--9227409 Score: 127
Period size: 54 Copynumber: 3.1 Consensus size: 54
9227232 CGTTTTCACT
9227242 TAAAACCGAGTAGCACAAGTTGTCTAACATAATTTAAAACCTCATATTGTATCA
1 TAAAACCGAGTAGCACAAGTTGTCTAACATAATTTAAAACCTCATATTGTATCA
* * * * ** * * *
9227296 TAAAACACCAGAATA-CACAAATT-T-TACCTATGGGTATTT---TTC-CAAATAGTCA-CT
1 T-AAA-ACC-GAGTAGCACAAGTTGTCTAAC-AT---AATTTAAAACCTCATATTGT-ATCA
9227350 TAAAACCGAGTAGCACAAGTTGTCTAACATAATTTAAAACCTCATATTGTATCA
1 TAAAACCGAGTAGCACAAGTTGTCTAACATAATTTAAAACCTCATATTGTATCA
9227404 TAAAAC
1 TAAAAC
9227410 ACCAGAATAC
Statistics
Matches: 80, Mismatches: 18, Indels: 32
0.62 0.14 0.25
Matches are distributed among these distances:
50 4 0.05
51 4 0.05
52 10 0.12
53 8 0.10
54 28 0.35
55 8 0.10
56 10 0.12
57 4 0.05
58 4 0.05
ACGTcount: A:0.41, C:0.19, G:0.10, T:0.30
Consensus pattern (54 bp):
TAAAACCGAGTAGCACAAGTTGTCTAACATAATTTAAAACCTCATATTGTATCA
Found at i:9227426 original size:108 final size:108
Alignment explanation
Indices: 9227237--9227451 Score: 430
Period size: 108 Copynumber: 2.0 Consensus size: 108
9227227 TTGCTCGTTT
9227237 TCACTTAAAACCGAGTAGCACAAGTTGTCTAACATAATTTAAAACCTCATATTGTATCATAAAAC
1 TCACTTAAAACCGAGTAGCACAAGTTGTCTAACATAATTTAAAACCTCATATTGTATCATAAAAC
9227302 ACCAGAATACACAAATTTTACCTATGGGTATTTTTCCAAATAG
66 ACCAGAATACACAAATTTTACCTATGGGTATTTTTCCAAATAG
9227345 TCACTTAAAACCGAGTAGCACAAGTTGTCTAACATAATTTAAAACCTCATATTGTATCATAAAAC
1 TCACTTAAAACCGAGTAGCACAAGTTGTCTAACATAATTTAAAACCTCATATTGTATCATAAAAC
9227410 ACCAGAATACACAAATTTTACCTATGGGTATTTTTCCAAATA
66 ACCAGAATACACAAATTTTACCTATGGGTATTTTTCCAAATA
9227452 TGAAATCTAG
Statistics
Matches: 107, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
108 107 1.00
ACGTcount: A:0.40, C:0.20, G:0.10, T:0.31
Consensus pattern (108 bp):
TCACTTAAAACCGAGTAGCACAAGTTGTCTAACATAATTTAAAACCTCATATTGTATCATAAAAC
ACCAGAATACACAAATTTTACCTATGGGTATTTTTCCAAATAG
Found at i:9232832 original size:138 final size:137
Alignment explanation
Indices: 9232651--9233351 Score: 676
Period size: 138 Copynumber: 5.1 Consensus size: 137
9232641 GAGAACATAG
* * * * * * *
9232651 ATATAATTAATATATGATTTTGTTTCATACAATATATTAATTGTCTATATTTTATCAATTTTATT
1 ATATAATTAATATATAAATTTGATTAATACAAAATATTAATTGTATATATTTTACCAA-TTTATT
* *
9232716 AATATAAGA-AATTATATTAATTAATTCTGGTCAAGATATAAAAAACATGGAAATTAATATTCTT
65 AATATAA-ACAATTATATTAATTAATTCTGGTCAAAATATAAAAAACATAGAAATTAATATTCTT
9232780 TTGGACAA-A
129 TTGGA-AAGA
*
9232789 ATATGATTAATATATAAATTTGATTAATACAAAATATTAATTGTATATATTTTACCAAATTTATT
1 ATATAATTAATATATAAATTTGATTAATACAAAATATTAATTGTATATATTTTACC-AATTTATT
* * *
9232854 AATATAAACAATTATATTAATTAATT-TCGGTCAAAATATAAAAGACAT-GAAA--ATTATTATT
65 AATATAAACAATTATATTAATTAATTCT-GGTCAAAATATAAAAAACATAGAAATTAATATTCTT
9232915 TTGGAAAGA
129 TTGGAAAGA
* * * * * * *
9232924 ATATAATTAATATATGAATTTGATTGAA-ACTAAATATTAGTTGTAGATATTTTATCGAAATTGT
1 ATATAATTAATATATAAATTTGATT-AATACAAAATATTAATTGTATATATTTTA-CCAATTTAT
* * ** *
9232988 TGATATAAACAATTATATTAATTAATTTCAAT-TTTGAAATA-AAAGAA-ATAGAAATTAATATT
64 TAATATAAACAATTATATTAATTAA-TTC--TGGTCAAAATATAAAAAACATAGAAATTAATATT
* *
9233050 GTTTTGGAAATA
126 CTTTTGGAAAGA
* * * *
9233062 ATATAATTAATATATATATGAATTTGATTCAA-ACTAAATATTAGTTGTAGATATTTTACCGAAA
1 ATATAATT-A-ATATATA--AATTTGATT-AATACAAAATATTAATTGTATATATTTTACC-AAT
* * * ** * *
9233126 TTGTTAATATAAACAATTATATTAATTAATTTCAGTTTTGACATA-AAAGAA-ATAGAAATTAAT
60 TTATTAATATAAACAATTATATTAATTAA-TTCTG-GTCAAAATATAAAAAACATAGAAATTAAT
* *
9233189 ATTGTTTTGGAAATA
123 ATTCTTTTGGAAAGA
*
9233204 ATATAATTAATATATATGAATTTGAATT-ATACAAAATATTAATTGTATATATTTTACAGAATTT
1 ATATAATTAATATATA--AATTTG-ATTAATACAAAATATTAATTGTATATATTTTAC-CAATTT
* * * *
9233268 ATTAATATAAA-AAGTTATATTAATTAATTCCGGTCAAAATTTAAAAGACATTGAAATTAATATT
62 ATTAATATAAACAA-TTATATTAATTAATTCTGGTCAAAATATAAAAAACATAGAAATTAATATT
*
9233332 CTTCTGGAAAGA
126 CTTTTGGAAAGA
9233344 ATATAATT
1 ATATAATT
9233352 CTTCTTTTTC
Statistics
Matches: 484, Mismatches: 53, Indels: 50
0.82 0.09 0.09
Matches are distributed among these distances:
134 2 0.00
135 90 0.19
136 13 0.03
137 12 0.02
138 123 0.25
139 15 0.03
140 103 0.21
141 5 0.01
142 121 0.25
ACGTcount: A:0.45, C:0.05, G:0.09, T:0.41
Consensus pattern (137 bp):
ATATAATTAATATATAAATTTGATTAATACAAAATATTAATTGTATATATTTTACCAATTTATTA
ATATAAACAATTATATTAATTAATTCTGGTCAAAATATAAAAAACATAGAAATTAATATTCTTTT
GGAAAGA
Found at i:9233049 original size:75 final size:75
Alignment explanation
Indices: 9232970--9233191 Score: 182
Period size: 71 Copynumber: 3.1 Consensus size: 75
9232960 TTAGTTGTAG
*
9232970 ATATTTTATCGAAATTGTTGATATAAACAATTATATTAATTAATTTCAATTTTGAAATAAAAGAA
1 ATATTTTATCGAAATTGTTAATATAAACAATTATATTAATTAATTTCAATTTTGAAATAAAAGAA
9233035 ATAGAAATTA
66 ATAGAAATTA
* * ** * * *
9233045 ATATTGTTTTGGAAA----TAATATAATTAA-TATA-TATATGAATTT-GA--TTCAAACT-AAA
1 ATATT-TTATCGAAATTGTTAATATAAACAATTATATTA-ATTAATTTCAATTTTGAAA-TAAAA
* * *
9233100 -TATTAG--TTGTA
63 GAAATAGAAAT-TA
* * *
9233111 GATATTTTACCGAAATTGTTAATATAAACAATTATATTAATTAATTTCAGTTTTGACATAAAAGA
1 -ATATTTTATCGAAATTGTTAATATAAACAATTATATTAATTAATTTCAATTTTGAAATAAAAGA
9233176 AATAGAAATTA
65 AATAGAAATTA
9233187 ATATT
1 ATATT
9233192 GTTTTGGAAA
Statistics
Matches: 105, Mismatches: 24, Indels: 36
0.64 0.15 0.22
Matches are distributed among these distances:
65 1 0.01
66 8 0.08
67 9 0.09
68 8 0.08
69 1 0.01
70 13 0.12
71 22 0.21
72 11 0.10
73 1 0.01
74 7 0.07
75 14 0.13
76 9 0.09
77 1 0.01
ACGTcount: A:0.45, C:0.05, G:0.09, T:0.41
Consensus pattern (75 bp):
ATATTTTATCGAAATTGTTAATATAAACAATTATATTAATTAATTTCAATTTTGAAATAAAAGAA
ATAGAAATTA
Found at i:9233116 original size:142 final size:138
Alignment explanation
Indices: 9232651--9233296 Score: 676
Period size: 142 Copynumber: 4.7 Consensus size: 138
9232641 GAGAACATAG
* * * * ** *
9232651 ATATAATT-A-ATATATGATTTTGTTTCATACAATATATTAATTGTCTATATTTTATC-AATTTT
1 ATATAATTAATATATATGAATTTGATT-AAACAAAATATTAATTGTAGATATTTTA-CGAA-ATT
* *** * *
9232713 ATTAATATAAGA-AATTATATTAATTAA-TTCTGGTCAAGATATAAAA-AACATGGAAATTAATA
63 ATTAATATAA-ACAATTATATTAATTAATTTC-AGTTTTGAAATAAAAGAA-ATAGAAATTAATA
*
9232775 TTCTTTTGGACAA-A
125 TTGTTTTGGA-AATA
* * *
9232789 ATATGATTAATATATA--AATTTGATTAATACAAAATATTAATTGTATATATTTTACCAAATTTA
1 ATATAATTAATATATATGAATTTGATTAA-ACAAAATATTAATTGTAGATATTTTACGAAA-TTA
* *** * * *
9232852 TTAATATAAACAATTATATTAATTAATTTC-GGTCAAAATATAAAAGACAT-GAAA--ATTATTA
64 TTAATATAAACAATTATATTAATTAATTTCAGTTTTGAA-ATAAAAGAAATAGAAATTAATATTG
*
9232913 TTTTGGAAAGA
128 TTTTGGAAATA
* * *
9232924 ATATAATT-A-ATATATGAATTTGATTGAAACTAAATATTAGTTGTAGATATTTTATCGAAATTG
1 ATATAATTAATATATATGAATTTGATT-AAACAAAATATTAATTGTAGATATTTTA-CGAAATTA
* *
9232987 TTGATATAAACAATTATATTAATTAATTTCAATTTTGAAATAAAAGAAATAGAAATTAATATTGT
64 TTAATATAAACAATTATATTAATTAATTTCAGTTTTGAAATAAAAGAAATAGAAATTAATATTGT
9233052 TTTGGAAATA
129 TTTGGAAATA
* *
9233062 ATATAATTAATATATATATGAATTTGATTCAAACTAAATATTAGTTGTAGATATTTTACCGAAAT
1 ATATAATT-A-ATATATATGAATTTGATT-AAACAAAATATTAATTGTAGATATTTTA-CGAAAT
* *
9233127 TGTTAATATAAACAATTATATTAATTAATTTCAGTTTTGACATAAAAGAAATAGAAATTAATATT
62 TATTAATATAAACAATTATATTAATTAATTTCAGTTTTGAAATAAAAGAAATAGAAATTAATATT
9233192 GTTTTGGAAATA
127 GTTTTGGAAATA
* * *
9233204 ATATAATTAATATATATGAATTTGAATTATACAAAATATTAATTGTATATATTTTACAGAATTTA
1 ATATAATTAATATATATGAATTTG-ATTAAACAAAATATTAATTGTAGATATTTTAC-GAAATTA
9233269 TTAATATAAA-AAGTTATATTAATTAATT
64 TTAATATAAACAA-TTATATTAATTAATT
9233297 CCGGTCAAAA
Statistics
Matches: 441, Mismatches: 42, Indels: 48
0.83 0.08 0.09
Matches are distributed among these distances:
133 5 0.01
134 3 0.01
135 93 0.21
136 13 0.03
137 10 0.02
138 98 0.22
139 8 0.02
140 74 0.17
141 5 0.01
142 132 0.30
ACGTcount: A:0.45, C:0.04, G:0.09, T:0.42
Consensus pattern (138 bp):
ATATAATTAATATATATGAATTTGATTAAACAAAATATTAATTGTAGATATTTTACGAAATTATT
AATATAAACAATTATATTAATTAATTTCAGTTTTGAAATAAAAGAAATAGAAATTAATATTGTTT
TGGAAATA
Found at i:9234917 original size:4 final size:4
Alignment explanation
Indices: 9234908--9234932 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
9234898 ATTATATGAC
9234908 ATAA ATAA ATAA ATAA ATAA ATAA A
1 ATAA ATAA ATAA ATAA ATAA ATAA A
9234933 AGGAAAAAGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (4 bp):
ATAA
Found at i:9241474 original size:946 final size:944
Alignment explanation
Indices: 9239640--9241529 Score: 3036
Period size: 946 Copynumber: 2.0 Consensus size: 944
9239630 ATTGTAAACC
*
9239640 GATTGTGTTTCATTCTCTAGAAGCGGGTTCTCAACCTTTGTGGCAAGTGTTAGTTATGGGTTCAA
1 GATTATGTTTCATTCTCTAGAAGCGGGTTCTCAACCTTTGTGGCAAGTGTTAGTTATGGGTTCAA
* * * *
9239705 TTGTACATACGAACTTTCTAGTAGAGGATAATGGGATCTCAATTTGAGTGTAGGCAATCTGTCAG
66 TTATACATACGAACTTTCTAGTAGAGGATAATGGGATCTCAATTTGAGTGCAGGCAATCTATAAG
*
9239770 AACTTGTAATCAATCCTTGGCAACAACTAAGGGGTGAGGGACCTTAATCATTCAATCAAGGTAAG
131 AACTTGTAATCAATCCTCGGCAACAACTAAGGGGTGAGGGACCTTAATCATTCAATCAAGGTAAG
*
9239835 TGTCGAGCTATGATTTGGATAAGTATTATTAAAAGGTATAGTTACCCATTTGTTAAAGGTTTAAC
196 TGTCGAGCTATGATTTGGATAAGTATTATTAAAAGGTATAGTTACCCATTTGTTAAAGGATTAAC
*
9239900 GTTGGGATTATGATTGAATATAGGTTGGTGTTCGTGAAACAACACTCTTTTCACAAATAGGTGTG
261 GTTGGGATTATGATTGAATATAGGTTGGTGTTCGTGAAACAACACTCTTTTCACAAACAGGTGTG
* * * * ** *
9239965 TGACCACTATCATTAGATGTGTGATAGCAAAAGCCGAAAAGCTGAAAACTGGGATGTCGTTATCA
326 TGAACACTATCATTAGATGTGTGATAGCAAAAGCCAAAAACCAGAAAACTGGGATGTCGACACCA
*
9240030 CACGGGCGTGAGGCCGCCCGTGTGGCCAGCCGTGTAACAAACATGGCCGGGTAGTCGACAAGATG
391 CACGGGCGTGAGGCCGCCCGTATGGCCAGCCGTGTAACAAACATGGCCGGGTAGTCGACAAGATG
* *
9240095 GCCATGAGTGCTTTCATGGACCAAAACGATATTGGACCATTTTGGGCCAAACTAGGTCGTGTGGG
456 GCCATGAATGATTTCATGGACCAAAACGATATTGGACCATTTTGGGCCAAACTAGGTCGTGTGGG
* * *
9240160 CCCAATGGGCCTGTGGGCCCTACTCTGAAGAATCTCACGGAAGTGAGATAAATATTGGGCGAGGC
521 CCCAATGGGCCTGTGGGCCCTAATCTGAAAAATCTCACGAAAGTGAGATAAATATTGGGCGAGGC
* * *
9240225 TTTGTAGACCACATGGCTAAGGCCATATTTGGGCTGTTTGGACCATACGAGCATATGGGCTCACA
586 TGTGTAGACCACATGGCGAAGGCCATATTTGGGCTGTTTGGACCATACGAGCATATAGGCTCACA
* * * * * * *
9240290 TGGGCCCGTAATGTGGGCTGTAGGCCTATTATCATTGTTTGACTGTTAAGGTTGCACGGGTTGCC
651 TAGGCCCGCAATATGGGCTATAGGCCCATTATCACTGTTTGACTGTTAAGGTTGCACGGGTCGCC
* *
9240355 TAAGACAACTGTGGACCTATTATTGAATCGGTAAGTATAACTAGGCCTCATATTGACGAAATGAC
716 TAAGACAACTGTGGACCTACTATTGAATCGGTAAGTATAACTAGGCCTCATATTAACGAAATGAC
* *
9240420 CATTATACCCCTGTGAGGTAAATTGATTGGAATACCCTTATTATGTATGACTGTTTCTGAGCATG
781 CATTATACCCCTATGAGGTAAATTGATTGGAATACCCTTATTATATATGACTGTTTCTGAGCATG
*
9240485 ATACTTCTGCATACACGTATATTATGTTGCATTACATGGGGTGGGATATATGTTTTGGAGGAAGT
846 ATACTTCTGCATACACGTATATTATGTTCCATTACATGGGGTGGGATATATGTTTTGGAGGAAGT
9240550 GCACTGAAAGGCTATAAGCCTATTACTGGCAGCT
911 GCACTGAAAGGCTATAAGCCTATTACTGGCAGCT
* * *
9240584 GATTATGTTTCATTCTCTAGAAGCGGGTTCTCAATCTTTGTGGTAAGTGTTAGTTGTGGGTTCAA
1 GATTATGTTTCATTCTCTAGAAGCGGGTTCTCAACCTTTGTGGCAAGTGTTAGTTATGGGTTCAA
*
9240649 TTATACATACGAACTTTCTAGTAGAGGATAATGGGATCTCGATTTGAGTGCAGGCAATCTATAAG
66 TTATACATACGAACTTTCTAGTAGAGGATAATGGGATCTCAATTTGAGTGCAGGCAATCTATAAG
* * *
9240714 AACTTGTAATCAATCCTCGGCAACGACTAAGGGGTGAGGGACCTTAATCGTTCTATCAAGGTAAG
131 AACTTGTAATCAATCCTCGGCAACAACTAAGGGGTGAGGGACCTTAATCATTCAATCAAGGTAAG
*
9240779 TGTCGAGCTATGATTTGGATAAGTATTATTAAAGGGTATAGTTACCCATTTGTTAAAGGATTAAC
196 TGTCGAGCTATGATTTGGATAAGTATTATTAAAAGGTATAGTTACCCATTTGTTAAAGGATTAAC
* * * *
9240844 GTTTGGATTATGATTGAATATAGGTTGGTGTTCGTGGGAACTACACTCTCTTT-GCAAACAGGTG
261 GTTGGGATTATGATTGAATATAGGTTGGTGTTCGT-GAAACAACACTCT-TTTCACAAACAGGTG
*
9240908 TGTGAACACTATCATTAGATGTGTGATAGCAAAAGCATAAAAACCAG-AAACTGGGATGTCGACA
324 TGTGAACACTATCATTAGATGTGTGATAGCAAAAGC-CAAAAACCAGAAAACTGGGATGTCGACA
* *
9240972 CCACACGGGTGTGAGGCCGCCCGTATGG-CAGGCCGTGTAACAAAACATGGCTGGGTAGTCGACA
388 CCACACGGGCGTGAGGCCGCCCGTATGGCCA-GCCGTGTAAC-AAACATGGCCGGGTAGTCGACA
* * *
9241036 AGATGGCCATGAATGATTTCATGGACCAAAACGATATTGGGCCATTTTGGGCCAAACTATGTTGT
451 AGATGGCCATGAATGATTTCATGGACCAAAACGATATTGGACCATTTTGGGCCAAACTAGGTCGT
* * * *
9241101 GTGGGCCCAATGGGCCTGTGGGCCTTAATTTGAAAAAT-TGCACGAAAGTGTGATAAATGTTGGG
516 GTGGGCCCAATGGGCCTGTGGGCCCTAATCTGAAAAATCT-CACGAAAGTGAGATAAATATTGGG
* * * *
9241165 CGAGGCTGTGTAGACCACATGTCGAAGGCCATATTTGGGCTTTTTGGGCCATACGAGCATGTAGG
580 CGAGGCTGTGTAGACCACATGGCGAAGGCCATATTTGGGCTGTTTGGACCATACGAGCATATAGG
* *
9241230 C-CAACATAGGCTCGCAATATGGGCTATAGGCCCATTATCACTGTTTGACTGTTAGGGTTGCACG
645 CTC-ACATAGGCCCGCAATATGGGCTATAGGCCCATTATCACTGTTTGACTGTTAAGGTTGCACG
* *
9241294 GGTCGCCTAAGACAACTGTGGACCTACTATTGAGTCGGTAAGTATAACTAGAGCC-CATATTAAT
709 GGTCGCCTAAGACAACTGTGGACCTACTATTGAATCGGTAAGTATAACTAG-GCCTCATATTAAC
* *
9241358 GAAATGACCATTATACCCCTATGCGGTAAATTGATTGGAATACCCTTATTATATATGATTGTTTC
773 GAAATGACCATTATACCCCTATGAGGTAAATTGATTGGAATACCCTTATTATATATGACTGTTTC
*
9241423 TGAGCATGATACTTCTGCATACACGTATCTTATGTTCCATTACATGGGGTGGGATATATGTTTTG
838 TGAGCATGATACTTCTGCATACACGTATATTATGTTCCATTACATGGGGTGGGATATATGTTTTG
*
9241488 GAGGAAGTGCACTGAAAGGCTATAAGCTTATTACTGGCAGCT
903 GAGGAAGTGCACTGAAAGGCTATAAGCCTATTACTGGCAGCT
9241530 CTGTTGCAAA
Statistics
Matches: 868, Mismatches: 70, Indels: 14
0.91 0.07 0.01
Matches are distributed among these distances:
944 281 0.32
945 107 0.12
946 477 0.55
947 3 0.00
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.30
Consensus pattern (944 bp):
GATTATGTTTCATTCTCTAGAAGCGGGTTCTCAACCTTTGTGGCAAGTGTTAGTTATGGGTTCAA
TTATACATACGAACTTTCTAGTAGAGGATAATGGGATCTCAATTTGAGTGCAGGCAATCTATAAG
AACTTGTAATCAATCCTCGGCAACAACTAAGGGGTGAGGGACCTTAATCATTCAATCAAGGTAAG
TGTCGAGCTATGATTTGGATAAGTATTATTAAAAGGTATAGTTACCCATTTGTTAAAGGATTAAC
GTTGGGATTATGATTGAATATAGGTTGGTGTTCGTGAAACAACACTCTTTTCACAAACAGGTGTG
TGAACACTATCATTAGATGTGTGATAGCAAAAGCCAAAAACCAGAAAACTGGGATGTCGACACCA
CACGGGCGTGAGGCCGCCCGTATGGCCAGCCGTGTAACAAACATGGCCGGGTAGTCGACAAGATG
GCCATGAATGATTTCATGGACCAAAACGATATTGGACCATTTTGGGCCAAACTAGGTCGTGTGGG
CCCAATGGGCCTGTGGGCCCTAATCTGAAAAATCTCACGAAAGTGAGATAAATATTGGGCGAGGC
TGTGTAGACCACATGGCGAAGGCCATATTTGGGCTGTTTGGACCATACGAGCATATAGGCTCACA
TAGGCCCGCAATATGGGCTATAGGCCCATTATCACTGTTTGACTGTTAAGGTTGCACGGGTCGCC
TAAGACAACTGTGGACCTACTATTGAATCGGTAAGTATAACTAGGCCTCATATTAACGAAATGAC
CATTATACCCCTATGAGGTAAATTGATTGGAATACCCTTATTATATATGACTGTTTCTGAGCATG
ATACTTCTGCATACACGTATATTATGTTCCATTACATGGGGTGGGATATATGTTTTGGAGGAAGT
GCACTGAAAGGCTATAAGCCTATTACTGGCAGCT
Found at i:9255801 original size:125 final size:123
Alignment explanation
Indices: 9255576--9255825 Score: 349
Period size: 125 Copynumber: 2.0 Consensus size: 123
9255566 CATGAAAATT
* * *
9255576 AATATTCTTTTAGAAAAAAATATAATTAATAGATGAATTTGATTAATAAAAATATTAATTGTATA
1 AATATTCTTTTAGAAAAAAATATAACTAATAGAGGAATTTGATTAATAAAAATACTAATTGTATA
* *
9255641 TATTTTACCGAATTTATTAATATAAATAGTTATATTAATCAATTTTGGTCAAAATATA
66 TATTTTACCAAATTTATTAATATAAACAGTTATATTAATCAATTTTGGTCAAAATATA
* * *
9255699 AATATTCTTTT-GGAAAAAATATAACTAATATAGGAATTTTGATTCATACAAAATACTAATTGTA
1 AATATTCTTTTAGAAAAAAATATAACTAATAGAGGAA-TTTGATTAATA-AAAATACTAATTGTA
* * * * *
9255763 TATTTTTTTACTAAATTTATTCATATAAACAGTTATATTAATTAATTTTGGTTAAAATATA
64 TA-TATTTTACCAAATTTATTAATATAAACAGTTATATTAATCAATTTTGGTCAAAATATA
9255824 AA
1 AA
9255826 GACATGAAAA
Statistics
Matches: 111, Mismatches: 13, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
122 21 0.19
123 21 0.19
124 16 0.14
125 53 0.48
ACGTcount: A:0.45, C:0.05, G:0.07, T:0.43
Consensus pattern (123 bp):
AATATTCTTTTAGAAAAAAATATAACTAATAGAGGAATTTGATTAATAAAAATACTAATTGTATA
TATTTTACCAAATTTATTAATATAAACAGTTATATTAATCAATTTTGGTCAAAATATA
Found at i:9255947 original size:137 final size:138
Alignment explanation
Indices: 9255699--9256138 Score: 618
Period size: 137 Copynumber: 3.2 Consensus size: 138
9255689 TCAAAATATA
* * * *
9255699 AATATTCTTTTGGAAAAAATATAACTAATATAGGAATTTTGATTCATACAAAATACTAATTGTAT
1 AATATTCTTTTGGAAAGAATATAATTAATATATGAA-TTTGATTCATACAAAATATTAATTGTAT
* * * * *
9255764 ATTTTTTTACTAAATTTATTCATATAAACAGTTATATTAATTAATTTTGGTTAAAATAT-AAAGA
65 A-TATTTTACTGAATTTATTAATATAAACAGTTATATTAATTAATTTTGATCAAAATATAAAAGA
* * *
9255828 CATGAAAAAT
129 TATGGAAATT
*
9255838 AATATTCTTTTGGAAAGAATATAATTAATATATGAATTTGATTCATACAAAATATTAGTTGTATA
1 AATATTCTTTTGGAAAGAATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATA
* *
9255903 TATTTTACTGAACTTATTAATATAAACAGTTATATTAATTAATTTTGATCAAAATATAAAATATA
66 TATTTTACTGAATTTATTAATATAAACAGTTATATTAATTAATTTTGATCAAAATATAAAAGATA
9255968 TGGAAATT
131 TGGAAATT
*
9255976 AATATTC-TTTGGAAATAATATAATTAATATATATGAATTTGATTCAT--AAAATATTAATTGTA
1 AATATTCTTTTGGAAAGAATATAATT-A-ATATATGAATTTGATTCATACAAAATATTAATTGTA
* * **
9256038 TATATTTTACCGAATTTATTAATATAAACAATTATATTAATTAATTTCAATCAAAATATAAAAGA
64 TATATTTTACTGAATTTATTAATATAAACAGTTATATTAATTAATTTTGATCAAAATATAAAAGA
9256103 TATGGAAATT
129 TATGGAAATT
* *
9256113 AATATTTTTTTGAAAAGAATATAATT
1 AATATTCTTTTGGAAAGAATATAATT
9256139 CATTTTTCTA
Statistics
Matches: 271, Mismatches: 26, Indels: 9
0.89 0.08 0.03
Matches are distributed among these distances:
137 157 0.58
138 62 0.23
139 52 0.19
ACGTcount: A:0.45, C:0.05, G:0.08, T:0.42
Consensus pattern (138 bp):
AATATTCTTTTGGAAAGAATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATA
TATTTTACTGAATTTATTAATATAAACAGTTATATTAATTAATTTTGATCAAAATATAAAAGATA
TGGAAATT
Found at i:9256205 original size:75 final size:76
Alignment explanation
Indices: 9256126--9256278 Score: 209
Period size: 75 Copynumber: 2.0 Consensus size: 76
9256116 ATTTTTTTGA
* * * * *
9256126 AAAGAATATAATTCATTTTTCTAACTTTCAATTTGCATTCTTTGTTAATATGGGAATAATCCT-A
1 AAAGAATATAATTCATTTTTCTAACGTTCAATTTGCATTCTCTATTAATAAGGGAATAATCATGA
*
9256190 TTTTCTTTTTT
66 TTTTCCTTTTT
* * **
9256201 AAAGAATATAATTCATTTTTCTAACGTTCCATTTGCCTTCTCTATTAATAAGGTTATAATCATGA
1 AAAGAATATAATTCATTTTTCTAACGTTCAATTTGCATTCTCTATTAATAAGGGAATAATCATGA
9256266 TTTTCCTTTTT
66 TTTTCCTTTTT
9256277 AA
1 AA
9256279 TATGTGATAT
Statistics
Matches: 67, Mismatches: 10, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
75 54 0.81
76 13 0.19
ACGTcount: A:0.30, C:0.14, G:0.08, T:0.48
Consensus pattern (76 bp):
AAAGAATATAATTCATTTTTCTAACGTTCAATTTGCATTCTCTATTAATAAGGGAATAATCATGA
TTTTCCTTTTT
Found at i:9262110 original size:39 final size:40
Alignment explanation
Indices: 9261995--9262138 Score: 166
Period size: 39 Copynumber: 3.6 Consensus size: 40
9261985 TCGTTCAAAC
* * ** * **
9261995 GCCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAAG
1 GCCTTCGGGACTTAGCCCGGATATCATAACTCGCACAATT
* * * *
9262035 GCCTTCGGGACTTAACCCGGATATCACAATTTGCACAATT
1 GCCTTCGGGACTTAGCCCGGATATCATAACTCGCACAATT
9262075 GCCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATT
1 GCCTTCGGGACTTAGCCCGGATATCATAACTCGCACAATT
*
9262114 GCCTTCGGG-CTTAGCCCGGGTATCA
1 GCCTTCGGGACTTAGCCCGGATATCA
9262139 CTCGAACATT
Statistics
Matches: 88, Mismatches: 16, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
39 50 0.57
40 38 0.43
ACGTcount: A:0.23, C:0.30, G:0.24, T:0.24
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATCATAACTCGCACAATT
Found at i:9270122 original size:38 final size:39
Alignment explanation
Indices: 9270009--9270151 Score: 234
Period size: 39 Copynumber: 3.7 Consensus size: 39
9269999 CCGCACAAAG
*
9270009 GCCTTCGGGACTTAACCCGGATATCACAATTTGCACAATT
1 GCCTTCGGG-CTTAGCCCGGATATCACAATTTGCACAATT
* * *
9270049 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCACAATTTGCACAATT
9270088 GCCTTCGGGCTTAGCCCGG-TATCACAATTTGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCACAATTTGCACAATT
9270126 GCCTTCGGGCTTAGCCCGGATATCAC
1 GCCTTCGGGCTTAGCCCGGATATCAC
9270152 TCGAACATTC
Statistics
Matches: 95, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
38 35 0.37
39 51 0.54
40 9 0.09
ACGTcount: A:0.22, C:0.30, G:0.21, T:0.27
Consensus pattern (39 bp):
GCCTTCGGGCTTAGCCCGGATATCACAATTTGCACAATT
Found at i:9270130 original size:77 final size:79
Alignment explanation
Indices: 9269969--9270150 Score: 269
Period size: 77 Copynumber: 2.3 Consensus size: 79
9269959 TCGTTCAAAC
* * **
9269969 GCCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATC
1 GCCTTCGGG-CTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATC
9270034 ACAATTTGCACAATT
65 ACAATTTGCACAATT
* ** *
9270049 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTGCCTTCGGG-CTTAGCCCGG-TATCA
1 GCCTTCGGGCTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATCA
9270112 CAATTTGCACAATT
66 CAATTTGCACAATT
9270126 GCCTTCGGGCTTAGCCCGGATATCA
1 GCCTTCGGGCTTAGCCCGGATATCA
9270151 CTCGAACATT
Statistics
Matches: 94, Mismatches: 8, Indels: 3
0.90 0.08 0.03
Matches are distributed among these distances:
77 44 0.47
78 9 0.10
79 32 0.34
80 9 0.10
ACGTcount: A:0.23, C:0.30, G:0.23, T:0.25
Consensus pattern (79 bp):
GCCTTCGGGCTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATCA
CAATTTGCACAATT
Found at i:9273584 original size:38 final size:36
Alignment explanation
Indices: 9273508--9273612 Score: 115
Period size: 37 Copynumber: 2.8 Consensus size: 36
9273498 GACCGATACT
9273508 GCACAATGCCTTCGGGCTTAGCCCGGAT-TAGCACTA
1 GCACAATGCCTTCGGGCTTAGCCCGGATATA-CACTA
* *
9273544 GCACAATGGCCTTCGGGTCTTAACCCGGATATA-ATTTA
1 GCACAAT-GCCTTCGGG-CTTAGCCCGGATATACA-CTA
* *
9273582 GCATAATGTCTTCGGGACTTAGCCCGGATAT
1 GCACAATGCCTTCGGG-CTTAGCCCGGATAT
9273613 CATTCAATTG
Statistics
Matches: 59, Mismatches: 6, Indels: 7
0.82 0.08 0.10
Matches are distributed among these distances:
36 7 0.12
37 31 0.53
38 19 0.32
39 2 0.03
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.27
Consensus pattern (36 bp):
GCACAATGCCTTCGGGCTTAGCCCGGATATACACTA
Found at i:9285863 original size:40 final size:40
Alignment explanation
Indices: 9285818--9285947 Score: 174
Period size: 40 Copynumber: 3.2 Consensus size: 40
9285808 CGGAATACAA
9285818 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* * *
9285858 CCGGATAGAACGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
9285898 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
9285938 CCGGATATAA
1 CCGGATATAA
9285948 TTTCCAGCAT
Statistics
Matches: 78, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
39 3 0.04
40 75 0.96
ACGTcount: A:0.24, C:0.29, G:0.25, T:0.22
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:9289921 original size:30 final size:30
Alignment explanation
Indices: 9289887--9289944 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
9289877 TTTTCGAGTA
* * *
9289887 TAGGGGTAAAATAGTTATTTTGCCAAAGTC
1 TAGGGGCAAAATAGTCATTTTACCAAAGTC
*
9289917 TAGGGGCAAAATGGTCATTTTACCAAAG
1 TAGGGGCAAAATAGTCATTTTACCAAAG
9289945 ATGTGAATTT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.34, C:0.12, G:0.24, T:0.29
Consensus pattern (30 bp):
TAGGGGCAAAATAGTCATTTTACCAAAGTC
Found at i:9290330 original size:46 final size:46
Alignment explanation
Indices: 9290277--9290402 Score: 207
Period size: 46 Copynumber: 2.7 Consensus size: 46
9290267 TTGTGTGTGG
*
9290277 GCCAGTGTAAGACATGTCTAGGACATGCATCGGCCACATTATGAGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGA
* *
9290323 GCCAGTGTAAGACATGTTTGGGACATGCATCGGCCACTTTATGAGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGA
* *
9290369 GCCAGTATGAGACATGTCTGGGACATGCATCGGC
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGC
9290403 TACGAGACAT
Statistics
Matches: 74, Mismatches: 6, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
46 74 1.00
ACGTcount: A:0.27, C:0.21, G:0.29, T:0.23
Consensus pattern (46 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGA
Found at i:9290418 original size:46 final size:47
Alignment explanation
Indices: 9290277--9290478 Score: 198
Period size: 46 Copynumber: 4.4 Consensus size: 47
9290267 TTGTGTGTGG
* *
9290277 GCCAGTGTAAGACATGTCTAGGACATGCATCGGCCACA-TTATGAGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACAGATATGAGA
* **
9290323 GCCAGTGTAAGACATGTTTGGGACATGCATCGGCCAC-TTTATGAGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACAGATATGAGA
* * * *
9290369 GCCAGTATGAGACATGTCTGGGACATGCATCGGCTACGAGACAT-A-A
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCAC-AGATATGAGA
* * * * * * *
9290415 GCCAGTGTAAGATATGTTTGAGACATGCATTGGCTAC-GAGATGATA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACAGATATGAGA
*
9290461 GTCAGTGTAAGACCATGT
1 GCCAGTGTAAGA-CATGT
9290479 TTAGAACATG
Statistics
Matches: 132, Mismatches: 18, Indels: 11
0.82 0.11 0.07
Matches are distributed among these distances:
44 4 0.03
45 1 0.01
46 120 0.91
47 5 0.04
48 2 0.02
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.24
Consensus pattern (47 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACAGATATGAGA
Found at i:9290418 original size:92 final size:92
Alignment explanation
Indices: 9290277--9290444 Score: 232
Period size: 92 Copynumber: 1.8 Consensus size: 92
9290267 TTGTGTGTGG
* **
9290277 GCCAGTGTAAGACATGTCTAGGACATGCATCGGCCACATTATGAGAGCCAGTGTAAGACATGTTT
1 GCCAGTATAAGACATGTCTAGGACATGCATCGGCCACAACATGAGAGCCAGTGTAAGACATGTTT
*
9290342 GGGACATGCATCGGCCACTTTATGAGA
66 GAGACATGCATCGGCCACTTTATGAGA
* * * *
9290369 GCCAGTATGAGACATGTCTGGGACATGCATCGGCTACGAGACAT-A-AGCCAGTGTAAGATATGT
1 GCCAGTATAAGACATGTCTAGGACATGCATCGGCCAC-A-ACATGAGAGCCAGTGTAAGACATGT
9290432 TTGAGACATGCAT
64 TTGAGACATGCAT
9290445 TGGCTACGAG
Statistics
Matches: 66, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
92 62 0.94
93 2 0.03
94 2 0.03
ACGTcount: A:0.29, C:0.20, G:0.27, T:0.24
Consensus pattern (92 bp):
GCCAGTATAAGACATGTCTAGGACATGCATCGGCCACAACATGAGAGCCAGTGTAAGACATGTTT
GAGACATGCATCGGCCACTTTATGAGA
Found at i:9291524 original size:28 final size:28
Alignment explanation
Indices: 9291484--9291547 Score: 119
Period size: 28 Copynumber: 2.3 Consensus size: 28
9291474 ATGTTTTTGC
9291484 ACACGGGCGTGTCGTGGCAGTGTGAGGG
1 ACACGGGCGTGTCGTGGCAGTGTGAGGG
*
9291512 ACACGGGCGTGTCGTGGCTGTGTGAGGG
1 ACACGGGCGTGTCGTGGCAGTGTGAGGG
9291540 ACACGGGC
1 ACACGGGC
9291548 CATTGACACG
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.14, C:0.20, G:0.48, T:0.17
Consensus pattern (28 bp):
ACACGGGCGTGTCGTGGCAGTGTGAGGG
Found at i:9296425 original size:46 final size:46
Alignment explanation
Indices: 9296373--9296548 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
9296363 TGGTTGAGCA
9296373 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
9296419 TTCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
9296464 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
9296512 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
9296549 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 64 0.58
47 27 0.25
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:9296529 original size:93 final size:93
Alignment explanation
Indices: 9296370--9296540 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
9296360 GGATGGTTGA
* **
9296370 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTTCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
9296435 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
9296463 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
9296528 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
9296541 ACTTATGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:9301432 original size:18 final size:18
Alignment explanation
Indices: 9301409--9301448 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
9301399 AACTTTTAAA
*
9301409 TATTTT-TTTGAATTTTTT
1 TATTTTATTT-AATATTTT
9301427 TATTTTATTTAATATTTT
1 TATTTTATTTAATATTTT
9301445 TATT
1 TATT
9301449 AATTTTAACA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 17 0.85
19 3 0.15
ACGTcount: A:0.23, C:0.00, G:0.03, T:0.75
Consensus pattern (18 bp):
TATTTTATTTAATATTTT
Found at i:9307797 original size:22 final size:24
Alignment explanation
Indices: 9307768--9307833 Score: 82
Period size: 22 Copynumber: 2.7 Consensus size: 24
9307758 TTAAAATAAT
*
9307768 TTATTAGATAATTATTACA-AAAA
1 TTATTAGATAATTATTAAATAAAA
9307791 -TATTAGATAATTATTGAAATAAAA
1 TTATTAGATAATTATT-AAATAAAA
9307815 TTATTAAGATAATTTATTA
1 TTATT-AGATAA-TTATTA
9307834 TATTTTCTTT
Statistics
Matches: 37, Mismatches: 1, Indels: 7
0.82 0.02 0.16
Matches are distributed among these distances:
22 15 0.41
23 2 0.05
24 4 0.11
25 4 0.11
26 7 0.19
27 5 0.14
ACGTcount: A:0.50, C:0.02, G:0.06, T:0.42
Consensus pattern (24 bp):
TTATTAGATAATTATTAAATAAAA
Found at i:9308938 original size:14 final size:14
Alignment explanation
Indices: 9308919--9308950 Score: 64
Period size: 14 Copynumber: 2.3 Consensus size: 14
9308909 AAATTTTTAA
9308919 AGTTGTCATTCTTG
1 AGTTGTCATTCTTG
9308933 AGTTGTCATTCTTG
1 AGTTGTCATTCTTG
9308947 AGTT
1 AGTT
9308951 CTTGAAGAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.16, C:0.12, G:0.22, T:0.50
Consensus pattern (14 bp):
AGTTGTCATTCTTG
Found at i:9309624 original size:2 final size:2
Alignment explanation
Indices: 9309619--9309687 Score: 120
Period size: 2 Copynumber: 34.5 Consensus size: 2
9309609 AATATATATA
9309619 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
* *
9309661 TG TG TG TG TG TG TG TC TG TG AG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG TG T
9309688 AGAGGGTTAT
Statistics
Matches: 63, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 63 1.00
ACGTcount: A:0.01, C:0.01, G:0.48, T:0.49
Consensus pattern (2 bp):
TG
Found at i:9314144 original size:17 final size:18
Alignment explanation
Indices: 9314119--9314153 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
9314109 TTATTTATTC
9314119 TATTATTGGAATT-TAAT
1 TATTATTGGAATTATAAT
*
9314136 TATTGTTGGAATTATAAT
1 TATTATTGGAATTATAAT
9314154 ATAGAATTGG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 12 0.75
18 4 0.25
ACGTcount: A:0.34, C:0.00, G:0.14, T:0.51
Consensus pattern (18 bp):
TATTATTGGAATTATAAT
Found at i:9314381 original size:19 final size:21
Alignment explanation
Indices: 9314302--9314426 Score: 119
Period size: 21 Copynumber: 6.0 Consensus size: 21
9314292 TACTTATTGG
*
9314302 TCAGCTCTTATGAGCTTCTGT
1 TCAGCTCTTACGAGCTTCTGT
* * * *
9314323 TCAACTCTTATGAGTTTTTGT
1 TCAGCTCTTACGAGCTTCTGT
* *
9314344 TTAGCTCTTACGAGTTTCTGT
1 TCAGCTCTTACGAGCTTCTGT
9314365 TCAGCT-TT-CGAGCTTCTGT
1 TCAGCTCTTACGAGCTTCTGT
* ** *
9314384 TTAGCTCTTATAAGCTTCTAT
1 TCAGCTCTTACGAGCTTCTGT
* *
9314405 TCAACTCTTACAAGCTTCTGT
1 TCAGCTCTTACGAGCTTCTGT
9314426 T
1 T
9314427 GGTGTATTCA
Statistics
Matches: 85, Mismatches: 17, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
19 15 0.18
20 4 0.05
21 66 0.78
ACGTcount: A:0.18, C:0.22, G:0.15, T:0.46
Consensus pattern (21 bp):
TCAGCTCTTACGAGCTTCTGT
Found at i:9314721 original size:37 final size:37
Alignment explanation
Indices: 9314679--9314749 Score: 117
Period size: 37 Copynumber: 1.9 Consensus size: 37
9314669 AATATGTTGG
*
9314679 ATAAGATTTTTGTT-TAAACCGTCGAACTTACTAACAA
1 ATAAGATTTTT-TTCTAAACCATCGAACTTACTAACAA
9314716 ATAAGATTTTTTTCTAAACCATCGAACTTACTAA
1 ATAAGATTTTTTTCTAAACCATCGAACTTACTAA
9314750 GCTTCATTAA
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
36 2 0.06
37 30 0.94
ACGTcount: A:0.38, C:0.17, G:0.08, T:0.37
Consensus pattern (37 bp):
ATAAGATTTTTTTCTAAACCATCGAACTTACTAACAA
Found at i:9319642 original size:2 final size:2
Alignment explanation
Indices: 9319635--9319661 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
9319625 TTAGCGGAAC
9319635 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
9319662 CTGAGATTGT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:9321382 original size:17 final size:17
Alignment explanation
Indices: 9321345--9321383 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
9321335 TTATTTATTC
*
9321345 TATTGTTGGAATTGAAT
1 TATTGTTGGAATTGAAA
9321362 TATTGTTGGAATT-ATAA
1 TATTGTTGGAATTGA-AA
9321379 TATTG
1 TATTG
9321384 AATTGGATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 1 0.05
17 19 0.95
ACGTcount: A:0.31, C:0.00, G:0.21, T:0.49
Consensus pattern (17 bp):
TATTGTTGGAATTGAAA
Found at i:9321551 original size:21 final size:21
Alignment explanation
Indices: 9321522--9321654 Score: 133
Period size: 21 Copynumber: 6.3 Consensus size: 21
9321512 GTGTTTTACT
*
9321522 TTCTATTCAGCTCTTATAAGC
1 TTCTGTTCAGCTCTTATAAGC
* *
9321543 TTTTGTTCAGCTCTTATGAGC
1 TTCTGTTCAGCTCTTATAAGC
* * *
9321564 TTCTGTTAAACTCTTATAAGT
1 TTCTGTTCAGCTCTTATAAGC
* * *
9321585 TTCTATTTAGCTCTTATGAGC
1 TTCTGTTCAGCTCTTATAAGC
9321606 TTCTGTTCAGCTCTTA-AGAGC
1 TTCTGTTCAGCTCTTATA-AGC
* * **
9321627 TTCTGTTCAACTTTTACGAGC
1 TTCTGTTCAGCTCTTATAAGC
9321648 TTCTGTT
1 TTCTGTT
9321655 GGTGTATTCA
Statistics
Matches: 91, Mismatches: 19, Indels: 4
0.80 0.17 0.04
Matches are distributed among these distances:
21 91 1.00
ACGTcount: A:0.20, C:0.20, G:0.14, T:0.46
Consensus pattern (21 bp):
TTCTGTTCAGCTCTTATAAGC
Found at i:9323683 original size:28 final size:28
Alignment explanation
Indices: 9323652--9323707 Score: 94
Period size: 28 Copynumber: 2.0 Consensus size: 28
9323642 CTCTATCAGA
*
9323652 TATGATCAAAACTGGTACCCCATGAAGT
1 TATGATCAAAACTAGTACCCCATGAAGT
*
9323680 TATGATCAAAACTAGTACTCCATGAAGT
1 TATGATCAAAACTAGTACCCCATGAAGT
9323708 CACACAATCT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.38, C:0.20, G:0.16, T:0.27
Consensus pattern (28 bp):
TATGATCAAAACTAGTACCCCATGAAGT
Found at i:9331021 original size:27 final size:29
Alignment explanation
Indices: 9330964--9331022 Score: 68
Period size: 28 Copynumber: 2.1 Consensus size: 29
9330954 GACCCATAAG
* *
9330964 AACAGTATAAAGTCCCAAATTTGAAACCA
1 AACAGTATAAAGTCCAAAACTTGAAACCA
* *
9330993 AACAGTCT-AAGTCCAAAACTT-AAATCA
1 AACAGTATAAAGTCCAAAACTTGAAACCA
9331020 AAC
1 AAC
9331023 CCCCAAAGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
27 8 0.31
28 11 0.42
29 7 0.27
ACGTcount: A:0.49, C:0.22, G:0.08, T:0.20
Consensus pattern (29 bp):
AACAGTATAAAGTCCAAAACTTGAAACCA
Found at i:9335944 original size:28 final size:28
Alignment explanation
Indices: 9335912--9335995 Score: 83
Period size: 28 Copynumber: 3.2 Consensus size: 28
9335902 AACTTTGATC
9335912 ACGTGTGTAGTACTAAGTGCAGGCTACT
1 ACGTGTGTAGTACTAAGTGCAGGCTACT
* * *
9335940 ACGTGTATCAG-A-T-GGT-TAGG-T-C-
1 ACGTGTGT-AGTACTAAGTGCAGGCTACT
9335962 ACGTGTGTAGTACTAAGTGCAGGCTACT
1 ACGTGTGTAGTACTAAGTGCAGGCTACT
9335990 ACGTGT
1 ACGTGT
9335996 ACTGGATAAT
Statistics
Matches: 42, Mismatches: 6, Indels: 16
0.66 0.09 0.25
Matches are distributed among these distances:
21 2 0.05
22 8 0.19
23 2 0.05
24 3 0.07
25 6 0.14
26 3 0.07
27 2 0.05
28 14 0.33
29 2 0.05
ACGTcount: A:0.24, C:0.17, G:0.30, T:0.30
Consensus pattern (28 bp):
ACGTGTGTAGTACTAAGTGCAGGCTACT
Found at i:9335985 original size:50 final size:49
Alignment explanation
Indices: 9335808--9336039 Score: 293
Period size: 49 Copynumber: 4.7 Consensus size: 49
9335798 TCTATTGTGA
*
9335808 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCGGATAATT
1 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
** * * * *
9335857 GGTTGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTTT
1 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAA--TT
* * * **
9335908 GATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
1 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
*
9335957 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACTGGATAATT
1 -GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
* * *
9336007 GGTCGCATATGTAGTACTAAGTGCAGGCTACTA
1 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTA
9336040 TGCGTACTAT
Statistics
Matches: 154, Mismatches: 26, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
49 72 0.47
50 43 0.28
51 39 0.25
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.30
Consensus pattern (49 bp):
GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
Found at i:9339152 original size:15 final size:15
Alignment explanation
Indices: 9339134--9339181 Score: 87
Period size: 15 Copynumber: 3.2 Consensus size: 15
9339124 TGGATTCTCG
*
9339134 TATCATGGATTTCTT
1 TATCTTGGATTTCTT
9339149 TATCTTGGATTTCTT
1 TATCTTGGATTTCTT
9339164 TATCTTGGATTTCTT
1 TATCTTGGATTTCTT
9339179 TAT
1 TAT
9339182 TCTGGGCTTC
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
15 32 1.00
ACGTcount: A:0.17, C:0.12, G:0.12, T:0.58
Consensus pattern (15 bp):
TATCTTGGATTTCTT
Found at i:9339159 original size:30 final size:31
Alignment explanation
Indices: 9339123--9339216 Score: 97
Period size: 30 Copynumber: 3.1 Consensus size: 31
9339113 GTGCTATAAA
9339123 TTGGATTCTC-GTATCATGGATTTCTTTATC
1 TTGGATTCTCTGTATCATGGATTTCTTTATC
* *
9339153 TTGGATT-TCTTTATCTTGGATTTCTTTATTC
1 TTGGATTCTCTGTATCATGGATTTCTTTA-TC
* * * *
9339184 TGGGCTTCTCTGTTTCA--GATTTCTCTATC
1 TTGGATTCTCTGTATCATGGATTTCTTTATC
9339213 TTGG
1 TTGG
9339217 TTTTTCTGGA
Statistics
Matches: 52, Mismatches: 9, Indels: 7
0.76 0.13 0.10
Matches are distributed among these distances:
29 7 0.13
30 32 0.62
31 7 0.13
32 6 0.12
ACGTcount: A:0.13, C:0.17, G:0.17, T:0.53
Consensus pattern (31 bp):
TTGGATTCTCTGTATCATGGATTTCTTTATC
Found at i:9342023 original size:50 final size:51
Alignment explanation
Indices: 9341948--9342190 Score: 310
Period size: 50 Copynumber: 4.8 Consensus size: 51
9341938 ATCTATTGTG
* * **
9341948 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGAT-GGTT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAACTT
* * *
9341998 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAACTT
* * * * **
9342049 TGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGAT-GGTT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAACTT
* *
9342099 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAACTT
* * *
9342150 TGATCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTAC
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGCGTAC
9342191 TATATAGCCT
Statistics
Matches: 165, Mismatches: 26, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
50 83 0.50
51 82 0.50
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.29
Consensus pattern (51 bp):
AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAACTT
Found at i:9342082 original size:51 final size:50
Alignment explanation
Indices: 9341951--9342190 Score: 309
Period size: 51 Copynumber: 4.8 Consensus size: 50
9341941 TATTGTGAGG
* * * ** *
9341951 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGG
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATACTTAGA
* * *
9342001 TCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTTTGA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGAT-ACTTAGA
* * * ** *
9342052 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGG
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATACTTAGA
* *
9342102 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTTTGA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGAT-ACTTAGA
9342153 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTAC
9342191 TATATAGCCT
Statistics
Matches: 162, Mismatches: 26, Indels: 3
0.85 0.14 0.02
Matches are distributed among these distances:
50 80 0.49
51 82 0.51
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (50 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATACTTAGA
Found at i:9342126 original size:101 final size:101
Alignment explanation
Indices: 9341951--9342183 Score: 457
Period size: 101 Copynumber: 2.3 Consensus size: 101
9341941 TATTGTGAGG
9341951 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACATGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACATGTGTAGTAC
9342016 TAAGTGCAGGCTACTATGCGTACCCGATAACTTTGA
66 TAAGTGCAGGCTACTATGCGTACCCGATAACTTTGA
*
9342052 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACATGTGTAGTAC
9342117 TAAGTGCAGGCTACTATGCGTACCCGATAACTTTGA
66 TAAGTGCAGGCTACTATGCGTACCCGATAACTTTGA
9342153 TCACGTGTGTAGTACTAAGTGCAGGCTACTA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTA
9342184 TGCGTACTAT
Statistics
Matches: 131, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
101 131 1.00
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (101 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACATGTGTAGTAC
TAAGTGCAGGCTACTATGCGTACCCGATAACTTTGA
Found at i:9360472 original size:40 final size:40
Alignment explanation
Indices: 9360394--9360616 Score: 283
Period size: 40 Copynumber: 5.5 Consensus size: 40
9360384 ACCCAAGTAT
* *
9360394 CTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* **
9360433 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCATGAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
*
9360473 CTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
*
9360513 CTTCGGGACTTAGCCCGGGTATA-TCAACTACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTA---GCACAAATGC
* * *
9360556 CTTCGGGACTTAGCTCGGATATAGTAACTTGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
9360596 CTTCGGGACTTAG-CCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
9360617 CATCCGAATA
Statistics
Matches: 161, Mismatches: 16, Indels: 14
0.84 0.08 0.07
Matches are distributed among these distances:
39 20 0.12
40 105 0.65
41 1 0.01
43 34 0.21
44 1 0.01
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:9360578 original size:83 final size:79
Alignment explanation
Indices: 9360394--9360616 Score: 281
Period size: 83 Copynumber: 2.8 Consensus size: 79
9360384 ACCCAAGTAT
* * *
9360394 CTTCGGGATTTAGCCGGATATAG-CAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
1 CTTCGGGACTTAGCCGGATATAGTC-ACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
**
9360458 CACTAGCATGAATGC
65 CACTAGCACAAATGC
* *
9360473 CTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAATGCCTTCGGGACTTAGCCCGGGTATA-T
1 CTTCGGGACTTAG-CCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
9360537 CAACTACTCGCACAAATGC
65 C-ACTA---GCACAAATGC
* *
9360556 CTTCGGGACTTAGCTCGGATATAGTAACTTGCACAAATGCCTTCGGGACTTAG-CCGGATAT
1 CTTCGGGACTTAGC-CGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATAT
9360617 CATCCGAATA
Statistics
Matches: 126, Mismatches: 11, Indels: 11
0.85 0.07 0.07
Matches are distributed among these distances:
79 14 0.11
80 47 0.37
81 1 0.01
82 8 0.06
83 56 0.44
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (79 bp):
CTTCGGGACTTAGCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTC
ACTAGCACAAATGC
Found at i:9363127 original size:19 final size:20
Alignment explanation
Indices: 9363103--9363140 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
9363093 ATAGTTTTAG
9363103 TCAAAAA-CCTTAAACCCTT
1 TCAAAAAGCCTTAAACCCTT
9363122 TCAAAAAGCCTTAAACCCT
1 TCAAAAAGCCTTAAACCCT
9363141 AAACTATAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 7 0.39
20 11 0.61
ACGTcount: A:0.42, C:0.32, G:0.03, T:0.24
Consensus pattern (20 bp):
TCAAAAAGCCTTAAACCCTT
Found at i:9372176 original size:46 final size:44
Alignment explanation
Indices: 9372022--9372241 Score: 165
Period size: 46 Copynumber: 4.8 Consensus size: 44
9372012 CACTTGTGTG
* * * * **
9372022 AGCTAGTGTAAGACATATCTGGGACATGCATCGACCATATTATGA
1 AGCTAGTGTAAGACATGTCTGGGACATGCATCGGCTAGAAGAT-A
* * * * *
9372067 GAGCCAGTGTAAGACCATGTCTGGGACAGGGCATCGACATTG-AGATG
1 -AGCTAGTGTAAGA-CATGTCTGGGACA-TGCATCGGC-TAGAAGATA
* *
9372114 AGTACTAGTGTAAGACATGTCTGGGACATGCTTCGGCCTCG-AGACGTA
1 AG--CTAGTGTAAGACATGTCTGGGACATGCATCGG-CTAGAAGA--TA
* *
9372162 AGCTAGTGTAAGACATGTCTGGGACGTGCATCGGCTATAAGATA
1 AGCTAGTGTAAGACATGTCTGGGACATGCATCGGCTAGAAGATA
* *
9372206 TGTTAGTGTAAGACCATGTCTGGGACATGACATCGG
1 AGCTAGTGTAAGA-CATGTCTGGGACATG-CATCGG
9372242 TATCTGACCC
Statistics
Matches: 141, Mismatches: 22, Indels: 22
0.76 0.12 0.12
Matches are distributed among these distances:
44 13 0.09
45 16 0.11
46 63 0.45
47 26 0.18
48 23 0.16
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.25
Consensus pattern (44 bp):
AGCTAGTGTAAGACATGTCTGGGACATGCATCGGCTAGAAGATA
Found at i:9374015 original size:14 final size:13
Alignment explanation
Indices: 9373993--9374022 Score: 51
Period size: 14 Copynumber: 2.2 Consensus size: 13
9373983 TAGTTAATAT
9373993 TTTAATAATTTAA
1 TTTAATAATTTAA
9374006 TTTAATTAATTTAA
1 TTTAA-TAATTTAA
9374020 TTT
1 TTT
9374023 TTTAAAATAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 5 0.31
14 11 0.69
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (13 bp):
TTTAATAATTTAA
Found at i:9376561 original size:37 final size:37
Alignment explanation
Indices: 9376520--9376640 Score: 104
Period size: 37 Copynumber: 3.2 Consensus size: 37
9376510 ATAAAATTAG
9376520 AATTATTGGTGTAATTATTATAAATTTTAAAAGATAA
1 AATTATTGGTGTAATTATTATAAATTTTAAAAGATAA
* * * * * *
9376557 AATTATATAGAACTCTTGATAATCCGATAAA-ATTAAAA-A-AA
1 AATTAT-T-G--GT-GTAATTAT--TATAAATTTTAAAAGATAA
9376598 AATTATTGGTGTAATTATTATAAATTTTAAAAGATAA
1 AATTATTGGTGTAATTATTATAAATTTTAAAAGATAA
9376635 AATTAT
1 AATTAT
9376641 ATACAACTCA
Statistics
Matches: 62, Mismatches: 12, Indels: 20
0.66 0.13 0.21
Matches are distributed among these distances:
34 5 0.08
35 6 0.10
36 6 0.10
37 15 0.24
38 1 0.02
39 2 0.03
40 1 0.02
41 9 0.15
42 6 0.10
43 6 0.10
44 5 0.08
ACGTcount: A:0.49, C:0.03, G:0.09, T:0.39
Consensus pattern (37 bp):
AATTATTGGTGTAATTATTATAAATTTTAAAAGATAA
Found at i:9393286 original size:21 final size:21
Alignment explanation
Indices: 9393262--9393302 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
9393252 TTCAATAAAG
9393262 AAAATCAAAAATAGGTGGAGC
1 AAAATCAAAAATAGGTGGAGC
*
9393283 AAAATCAAAAGTAGGTGGAG
1 AAAATCAAAAATAGGTGGAG
9393303 TATCAGATTA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.51, C:0.07, G:0.27, T:0.15
Consensus pattern (21 bp):
AAAATCAAAAATAGGTGGAGC
Found at i:9395475 original size:13 final size:14
Alignment explanation
Indices: 9395457--9395486 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
9395447 CTGTGTGTTA
9395457 TTTA-TTTTATTTT
1 TTTATTTTTATTTT
9395470 TTTATTTTTATTTT
1 TTTATTTTTATTTT
9395484 TTT
1 TTT
9395487 TCACAGTTTG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 4 0.25
14 12 0.75
ACGTcount: A:0.13, C:0.00, G:0.00, T:0.87
Consensus pattern (14 bp):
TTTATTTTTATTTT
Found at i:9403151 original size:20 final size:21
Alignment explanation
Indices: 9403108--9403151 Score: 63
Period size: 20 Copynumber: 2.1 Consensus size: 21
9403098 AAACATAATA
*
9403108 ATAGTATTACAAAGTATATAC
1 ATAGTATTACAAAATATATAC
*
9403129 ATAGTATTA-AAAATATGTAC
1 ATAGTATTACAAAATATATAC
9403149 ATA
1 ATA
9403152 ATATAATGTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 12 0.57
21 9 0.43
ACGTcount: A:0.50, C:0.07, G:0.09, T:0.34
Consensus pattern (21 bp):
ATAGTATTACAAAATATATAC
Found at i:9403155 original size:29 final size:28
Alignment explanation
Indices: 9403123--9403227 Score: 103
Period size: 29 Copynumber: 3.8 Consensus size: 28
9403113 ATTACAAAGT
*
9403123 ATATACATAGTATTAAAAATATGTACATA
1 ATATA-ATAGTATTAAAAATATATACATA
*
9403152 ATATAAT-G--TTAAAAATACATACATA
1 ATATAATAGTATTAAAAATATATACATA
9403177 ATAT-ATAGTTATTAAAAAATATATACATA
1 ATATAATAG-TATT-AAAAATATATACATA
* *
9403206 AGATAATATGTA-AAAAAATATA
1 ATATAATA-GTATTAAAAATATA
9403228 ATATAGTATT
Statistics
Matches: 64, Mismatches: 5, Indels: 15
0.76 0.06 0.18
Matches are distributed among these distances:
24 2 0.03
25 20 0.31
27 1 0.02
28 13 0.20
29 22 0.34
30 5 0.08
31 1 0.02
ACGTcount: A:0.56, C:0.05, G:0.06, T:0.33
Consensus pattern (28 bp):
ATATAATAGTATTAAAAATATATACATA
Found at i:9403193 original size:27 final size:27
Alignment explanation
Indices: 9403129--9403193 Score: 66
Period size: 25 Copynumber: 2.5 Consensus size: 27
9403119 AAGTATATAC
**
9403129 ATAG-TATTAAAAATATGTACATAATAT
1 ATAGTTATT-AAAATACATACATAATAT
9403156 A-ATGTTA--AAAATACATACATAATAT
1 ATA-GTTATTAAAATACATACATAATAT
9403181 ATAGTTATTAAAA
1 ATAGTTATTAAAA
9403194 AATATATACA
Statistics
Matches: 31, Mismatches: 2, Indels: 10
0.72 0.05 0.23
Matches are distributed among these distances:
25 21 0.68
26 2 0.06
27 6 0.19
28 2 0.06
ACGTcount: A:0.54, C:0.05, G:0.06, T:0.35
Consensus pattern (27 bp):
ATAGTTATTAAAATACATACATAATAT
Found at i:9403446 original size:19 final size:21
Alignment explanation
Indices: 9403409--9403448 Score: 57
Period size: 19 Copynumber: 2.0 Consensus size: 21
9403399 ATATACCTAT
*
9403409 ATATATATTAAAGATATATAC
1 ATATATATTAAAGACATATAC
9403430 ATATATA-TAAA-ACATATAC
1 ATATATATTAAAGACATATAC
9403449 TAATATCAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 7 0.39
20 4 0.22
21 7 0.39
ACGTcount: A:0.55, C:0.07, G:0.03, T:0.35
Consensus pattern (21 bp):
ATATATATTAAAGACATATAC
Found at i:9403454 original size:21 final size:22
Alignment explanation
Indices: 9403399--9403454 Score: 62
Period size: 21 Copynumber: 2.6 Consensus size: 22
9403389 TTACATAAAT
* * *
9403399 ATATACCTATATATATATTAAAG
1 ATATA-CTACATATATATAAAAC
9403422 ATATA-TACATATATATAAAAC
1 ATATACTACATATATATAAAAC
9403443 ATATACTA-ATAT
1 ATATACTACATAT
9403455 CAATAATAAT
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
21 22 0.76
22 2 0.07
23 5 0.17
ACGTcount: A:0.52, C:0.09, G:0.02, T:0.38
Consensus pattern (22 bp):
ATATACTACATATATATAAAAC
Found at i:9403506 original size:23 final size:24
Alignment explanation
Indices: 9403471--9403638 Score: 70
Period size: 23 Copynumber: 7.0 Consensus size: 24
9403461 TAATAATAAG
9403471 GATAATA-T-AAAAATATATACAT
1 GATAATAGTAAAAAATATATACAT
9403493 GA-AATAGTATAAAAAATATATA-ACT
1 GATAATAG--TAAAAAATATATACA-T
* *
9403518 AATAATA-TTAAAAATATATACAT
1 GATAATAGTAAAAAATATATACAT
* *
9403541 GAGATAACA-TAAAAAGATATGAATAGTAT
1 --GATAATAGTAAAAA-ATAT--ATA-CAT
*
9403570 GAT-AT-TTAAAAAATATATACAT
1 GATAATAGTAAAAAATATATACAT
* *
9403592 AATATATA-TAAAATATATATA-ATT
1 GATA-ATAGTAAAAAATATATACA-T
* * *
9403616 AATAATA-TTAAAAATACATACAT
1 GATAATAGTAAAAAATATATACAT
9403639 AATATATATG
Statistics
Matches: 114, Mismatches: 13, Indels: 37
0.70 0.08 0.23
Matches are distributed among these distances:
21 4 0.04
22 6 0.05
23 31 0.27
24 23 0.20
25 27 0.24
26 15 0.13
27 3 0.03
28 3 0.03
29 2 0.02
ACGTcount: A:0.58, C:0.04, G:0.05, T:0.32
Consensus pattern (24 bp):
GATAATAGTAAAAAATATATACAT
Found at i:9403603 original size:24 final size:24
Alignment explanation
Indices: 9403475--9403674 Score: 139
Period size: 24 Copynumber: 8.2 Consensus size: 24
9403465 AATAAGGATA
9403475 ATAT-AAAAATATATACATGAA-AT
1 ATATAAAAAATATATACAT-AATAT
9403498 AGTATAAAAAATATATA-ACTAATA-
1 A-TATAAAAAATATATACA-TAATAT
*
9403522 ATATTAAAAATATATACATGAGATA-
1 ATATAAAAAATATATACAT-A-ATAT
* *
9403547 ACATAAAAAGATAT-GA-ATAGTATGAT
1 ATATAAAAA-ATATATACATA--AT-AT
*
9403573 ATTTAAAAAATATATACATAATAT
1 ATATAAAAAATATATACATAATAT
*
9403597 ATATAAAATATATATA-ATTAATA-
1 ATATAAAAAATATATACA-TAATAT
* *
9403620 ATATTAAAAATACATACATAATAT
1 ATATAAAAAATATATACATAATAT
* * *
9403644 ATATGAAAAACACATACAATATATAT
1 ATATAAAAAATATATAC-ATA-ATAT
9403670 ATATA
1 ATATA
9403675 TTCAAAATGA
Statistics
Matches: 143, Mismatches: 16, Indels: 33
0.74 0.08 0.17
Matches are distributed among these distances:
23 36 0.25
24 50 0.35
25 34 0.24
26 20 0.14
27 3 0.02
ACGTcount: A:0.58, C:0.05, G:0.04, T:0.32
Consensus pattern (24 bp):
ATATAAAAAATATATACATAATAT
Found at i:9403639 original size:47 final size:46
Alignment explanation
Indices: 9403381--9403653 Score: 196
Period size: 47 Copynumber: 5.8 Consensus size: 46
9403371 AAACACCTAT
* *
9403381 TAATAATATTACATAAATATATACCT-ATATATATATTAAAGATATATACA
1 TAATAATATTA-A-AAATATATACATGA-ATATATA-TAAAAATATATA-A
* *
9403431 T-AT-ATA-T-AAAACATATAC-T-AATATCA-ATAATAATA-ATAA
1 TAATAATATTAAAAATATATACATGAATAT-ATATAAAAATATATAA
**
9403470 GGATAATA-TAAAAATATATACATGAA-ATAGTATAAAAAATATATAA
1 TAATAATATTAAAAATATATACATGAATATA-TAT-AAAAATATATAA
* *
9403516 CTAATAATATTAAAAATATATACATGAGATA-ACATAAAAAGATATGAA
1 -TAATAATATTAAAAATATATACATGA-ATATATATAAAAATATAT-AA
*
9403564 TAGTATGATATTTAAAAAATATATACAT-AATATATATAAAATATATATAA
1 TA--ATAATA-TT-AAAAATATATACATGAATATATATAAAA-ATATATAA
*
9403614 TTAATAATATTAAAAATACATACAT-AATATATATGAAAAA
1 -TAATAATATTAAAAATATATACATGAATATATAT-AAAAA
9403654 CACATACAAT
Statistics
Matches: 185, Mismatches: 15, Indels: 49
0.74 0.06 0.20
Matches are distributed among these distances:
39 1 0.01
40 5 0.03
41 10 0.05
42 16 0.09
43 6 0.03
44 13 0.07
45 7 0.04
46 4 0.02
47 41 0.22
48 30 0.16
49 17 0.09
50 14 0.08
51 21 0.11
ACGTcount: A:0.58, C:0.05, G:0.04, T:0.33
Consensus pattern (46 bp):
TAATAATATTAAAAATATATACATGAATATATATAAAAATATATAA
Found at i:9403737 original size:16 final size:16
Alignment explanation
Indices: 9403718--9403758 Score: 50
Period size: 14 Copynumber: 2.7 Consensus size: 16
9403708 ATTAATAGTA
*
9403718 ATATATAAATATATTC
1 ATATATAAATATATAC
9403734 ATATAT--ATATATAC
1 ATATATAAATATATAC
*
9403748 ACATATAAATA
1 ATATATAAATA
9403759 CTAATTGAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 4
0.78 0.07 0.15
Matches are distributed among these distances:
14 12 0.57
16 9 0.43
ACGTcount: A:0.54, C:0.07, G:0.00, T:0.39
Consensus pattern (16 bp):
ATATATAAATATATAC
Found at i:9403867 original size:28 final size:31
Alignment explanation
Indices: 9403805--9403867 Score: 71
Period size: 28 Copynumber: 2.1 Consensus size: 31
9403795 CAAAATATTG
* *
9403805 ATAATAGATATAATAATGATATTAATAAAAT
1 ATAATAGATATAATAATAATATTAATAAAAA
9403836 ATAATAG-TAT-A-AATAATATTAA-AATAAA
1 ATAATAGATATAATAATAATATTAATAA-AAA
9403864 ATAA
1 ATAA
9403868 AATCCGTAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
27 2 0.07
28 16 0.55
29 1 0.03
30 3 0.10
31 7 0.24
ACGTcount: A:0.62, C:0.00, G:0.05, T:0.33
Consensus pattern (31 bp):
ATAATAGATATAATAATAATATTAATAAAAA
Found at i:9405110 original size:49 final size:49
Alignment explanation
Indices: 9405057--9405182 Score: 216
Period size: 49 Copynumber: 2.6 Consensus size: 49
9405047 CCTCTACAGT
* * *
9405057 ATCTATTTGTACTTGAGAGAATGTTACAATTGAAATTCTGACACAAGGA
1 ATCTACTTGTACTTGAGAGAATGTTACAATCGAAACTCTGACACAAGGA
9405106 ATCTACTTGTACTTGAGAGAATGTTACAATCGAAACTCTGACACAAGGA
1 ATCTACTTGTACTTGAGAGAATGTTACAATCGAAACTCTGACACAAGGA
*
9405155 ATCTACTTGTTCTTGAGAGAATGTTACA
1 ATCTACTTGTACTTGAGAGAATGTTACA
9405183 GGGTCACGCC
Statistics
Matches: 73, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
49 73 1.00
ACGTcount: A:0.35, C:0.15, G:0.18, T:0.32
Consensus pattern (49 bp):
ATCTACTTGTACTTGAGAGAATGTTACAATCGAAACTCTGACACAAGGA
Done.