Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr02 99090824
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 99090824
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 317 characters in sequence are not A, C, G, or T
File 42 of 318
Found at i:11770051 original size:27 final size:26
Alignment explanation
Indices: 11769749--11770038 Score: 244
Period size: 27 Copynumber: 10.8 Consensus size: 26
11769739 GACCCCAGTA
* * * *
11769749 TGTAGAATTATCAAAATACCCCTAGTT
1 TGTAAAATTATCGAAATA-CCCTCGAT
11769776 TGTAAAATTATCGAAATACCCTCGAAT
1 TGTAAAATTATCGAAATACCCTCG-AT
*
11769803 TGTAAAATTATCGAAATACCCCCGATT
1 TGTAAAATTATCGAAATACCCTCGA-T
* ** *
11769830 TGTAGAATTGCCGAAATACCC-CAAATT
1 TGTAAAATTATCGAAATACCCTC-GA-T
* * *
11769857 TGTAAAATCATCGAAATACCCTTGAA
1 TGTAAAATTATCGAAATACCCTCGAT
** *
11769883 TGTAAAATTATTAAAATACCCTCAATT
1 TGTAAAATTATCGAAATACCCTCGA-T
* * *
11769910 TGTAAAATTACCGAAATACCTTCAGTT
1 TGTAAAATTATCGAAATACCCTC-GAT
* *
11769937 TGTAAAATTAGCGAAATACTCTCGAAT
1 TGTAAAATTATCGAAATACCCTCG-AT
* *
11769964 TGTAAAATTACCAAAATACCCTCGATT
1 TGTAAAATTATCGAAATACCCTCGA-T
* *
11769991 TGT-AAATTAAT-AAAATACCCCCGATT
1 TGTAAAATT-ATCGAAATACCCTCGA-T
11770017 TGTAAAATTATCGAAATACCCT
1 TGTAAAATTATCGAAATACCCT
11770039 TGTAGTGTAA
Statistics
Matches: 213, Mismatches: 39, Indels: 22
0.78 0.14 0.08
Matches are distributed among these distances:
26 53 0.25
27 160 0.75
ACGTcount: A:0.40, C:0.19, G:0.10, T:0.31
Consensus pattern (26 bp):
TGTAAAATTATCGAAATACCCTCGAT
Found at i:11772011 original size:47 final size:47
Alignment explanation
Indices: 11771942--11772036 Score: 172
Period size: 47 Copynumber: 2.0 Consensus size: 47
11771932 TTAGGGAAAG
* *
11771942 TATGTGGGTGGTAGTTATGTGGATGCCCGGAGGAGAGAGTTTCTGAA
1 TATGTGCGTGCTAGTTATGTGGATGCCCGGAGGAGAGAGTTTCTGAA
11771989 TATGTGCGTGCTAGTTATGTGGATGCCCGGAGGAGAGAGTTTCTGAA
1 TATGTGCGTGCTAGTTATGTGGATGCCCGGAGGAGAGAGTTTCTGAA
11772036 T
1 T
11772037 TTGACTCAGG
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 46 1.00
ACGTcount: A:0.21, C:0.11, G:0.38, T:0.31
Consensus pattern (47 bp):
TATGTGCGTGCTAGTTATGTGGATGCCCGGAGGAGAGAGTTTCTGAA
Found at i:11773050 original size:13 final size:13
Alignment explanation
Indices: 11773032--11773057 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
11773022 AAGCAATCAA
11773032 ACACGGGCGTGTC
1 ACACGGGCGTGTC
11773045 ACACGGGCGTGTC
1 ACACGGGCGTGTC
11773058 CCTGTCAAGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.31, G:0.38, T:0.15
Consensus pattern (13 bp):
ACACGGGCGTGTC
Found at i:11779902 original size:43 final size:43
Alignment explanation
Indices: 11779853--11779939 Score: 174
Period size: 43 Copynumber: 2.0 Consensus size: 43
11779843 GAATTAAAAC
11779853 ATAGGCATTTATGCATTGATTGTTAGACTTTAAGGAATTAGAG
1 ATAGGCATTTATGCATTGATTGTTAGACTTTAAGGAATTAGAG
11779896 ATAGGCATTTATGCATTGATTGTTAGACTTTAAGGAATTAGAG
1 ATAGGCATTTATGCATTGATTGTTAGACTTTAAGGAATTAGAG
11779939 A
1 A
11779940 ATCAAAGCAT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 44 1.00
ACGTcount: A:0.33, C:0.07, G:0.23, T:0.37
Consensus pattern (43 bp):
ATAGGCATTTATGCATTGATTGTTAGACTTTAAGGAATTAGAG
Found at i:11788787 original size:49 final size:49
Alignment explanation
Indices: 11788715--11788902 Score: 214
Period size: 49 Copynumber: 3.8 Consensus size: 49
11788705 TGAGGTCACG
*
11788715 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCA
* * * ** * * * * *
11788764 TGTGTAGTGCTAAATGCAGGCTACTATGCATACCCGAAAACTGTGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-T-TGGTCGCA
*
11788815 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCA
* * * *
11788864 TGTTTAGCACTAAGTGCAGGCTACTATGCGTACCAGATA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
11788903 GCTTCGGCTA
Statistics
Matches: 111, Mismatches: 26, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
49 72 0.65
50 2 0.02
51 37 0.33
ACGTcount: A:0.27, C:0.20, G:0.26, T:0.28
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCA
Found at i:11788883 original size:100 final size:100
Alignment explanation
Indices: 11788710--11788897 Score: 313
Period size: 100 Copynumber: 1.9 Consensus size: 100
11788700 TATTGTGAGG
* **
11788710 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGTGCT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCATGTGTAGCACT
11788775 AAATGCAGGCTACTATGCATACCCGAAAACTGTGA
66 AAATGCAGGCTACTATGCATACCCGAAAACTGTGA
* *
11788810 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTATTGGTCGCATGTTTAGCACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCATGTGTAGCACT
* *
11788875 AAGTGCAGGCTACTATGCGTACC
66 AAATGCAGGCTACTATGCATACC
11788898 AGATAGCTTC
Statistics
Matches: 81, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
100 81 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.28
Consensus pattern (100 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCATGTGTAGCACT
AAATGCAGGCTACTATGCATACCCGAAAACTGTGA
Found at i:11791927 original size:15 final size:15
Alignment explanation
Indices: 11791907--11791971 Score: 66
Period size: 15 Copynumber: 4.4 Consensus size: 15
11791897 GTATCTTGGG
11791907 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
11791922 TTTCTTTATTCTAGG-
1 TTTCTTTATTCT-GGA
11791937 TTT-TTCTA-TCTTGGA
1 TTTCTT-TATTC-TGGA
*
11791952 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
11791966 TTTCTT
1 TTTCTT
11791972 ATTATTATTC
Statistics
Matches: 43, Mismatches: 1, Indels: 13
0.75 0.02 0.23
Matches are distributed among these distances:
14 14 0.33
15 23 0.53
16 6 0.14
ACGTcount: A:0.11, C:0.14, G:0.12, T:0.63
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:11794500 original size:49 final size:49
Alignment explanation
Indices: 11794428--11794615 Score: 250
Period size: 49 Copynumber: 3.8 Consensus size: 49
11794418 TGAGGTCACG
* * *
11794428 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATTGATCGCA
* ** * * * *
11794477 TGTGTAGTACTAAGTGTAGGCTACTATGCATACCCGAAAACTGTGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAA-T-TGATCGCA
*
11794528 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTATTGATCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATTGATCGCA
*
11794577 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATA
11794616 GCTTCGGCTA
Statistics
Matches: 118, Mismatches: 19, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
49 77 0.65
50 2 0.02
51 39 0.33
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.29
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATTGATCGCA
Found at i:11794598 original size:100 final size:100
Alignment explanation
Indices: 11794423--11794610 Score: 322
Period size: 100 Copynumber: 1.9 Consensus size: 100
11794413 TATTGTGAGG
* *
11794423 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGATCGCATGTGTAGTACT
*
11794488 AAGTGTAGGCTACTATGCATACCCGAAAACTGTGA
66 AAGTGCAGGCTACTATGCATACCCGAAAACTGTGA
* *
11794523 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTATTGATCGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGATCGCATGTGTAGTACT
*
11794588 AAGTGCAGGCTACTATGCGTACC
66 AAGTGCAGGCTACTATGCATACC
11794611 AGATAGCTTC
Statistics
Matches: 82, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
100 82 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.29
Consensus pattern (100 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGATCGCATGTGTAGTACT
AAGTGCAGGCTACTATGCATACCCGAAAACTGTGA
Found at i:11796966 original size:28 final size:28
Alignment explanation
Indices: 11796934--11797032 Score: 112
Period size: 28 Copynumber: 3.5 Consensus size: 28
11796924 GCAATAAGCC
*
11796934 CGCACACTTAGTGCTTAATAGTCGAACT
1 CGCACACTTAGTGCTTAATAATCGAACT
*
11796962 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTA-ATAATCGAACT
* * *
11796990 TGCACACTTAGTGCTGT-ATAATTTGAACC
1 CGCACACTTAGTGCT-TAATAA-TCGAACT
11797019 CGCACACTTAGTGC
1 CGCACACTTAGTGC
11797033 CAATTTGTGA
Statistics
Matches: 60, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
27 2 0.03
28 40 0.67
29 17 0.28
30 1 0.02
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTTAATAATCGAACT
Found at i:11804649 original size:28 final size:28
Alignment explanation
Indices: 11804617--11804715 Score: 112
Period size: 28 Copynumber: 3.5 Consensus size: 28
11804607 GCAATAAGCC
*
11804617 CGCACACTTAGTGCTTAATAGTCGAACT
1 CGCACACTTAGTGCTTAATAATCGAACT
*
11804645 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTA-ATAATCGAACT
* * *
11804673 TGCACACTTAGTGCTGT-ATAATTTGAACC
1 CGCACACTTAGTGCT-TAATAA-TCGAACT
11804702 CGCACACTTAGTGC
1 CGCACACTTAGTGC
11804716 CAATTTGTGA
Statistics
Matches: 60, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
27 2 0.03
28 40 0.67
29 17 0.28
30 1 0.02
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTTAATAATCGAACT
Found at i:11808127 original size:17 final size:17
Alignment explanation
Indices: 11808105--11808138 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
11808095 GAAAATTTCT
11808105 GACATTAAAGGAATCAG
1 GACATTAAAGGAATCAG
11808122 GACATTAAAGGAATCAG
1 GACATTAAAGGAATCAG
11808139 CCCTTCTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.47, C:0.12, G:0.24, T:0.18
Consensus pattern (17 bp):
GACATTAAAGGAATCAG
Found at i:11813335 original size:15 final size:15
Alignment explanation
Indices: 11813315--11813346 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
11813305 TAGCTTTTGT
11813315 TTCTTTTTCCTTTTA
1 TTCTTTTTCCTTTTA
11813330 TTCTTTTTCCTTTTA
1 TTCTTTTTCCTTTTA
11813345 TT
1 TT
11813347 TATTTATTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.06, C:0.19, G:0.00, T:0.75
Consensus pattern (15 bp):
TTCTTTTTCCTTTTA
Found at i:11813827 original size:16 final size:16
Alignment explanation
Indices: 11813808--11813858 Score: 70
Period size: 16 Copynumber: 3.3 Consensus size: 16
11813798 TAATAATATA
*
11813808 ATATCATTATAAATTC
1 ATATTATTATAAATTC
*
11813824 ATATTATCATAAATTC
1 ATATTATTATAAATTC
11813840 ATATTA-TATAAATT-
1 ATATTATTATAAATTC
11813854 ATATT
1 ATATT
11813859 TATATGTCAT
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
14 5 0.16
15 7 0.22
16 20 0.62
ACGTcount: A:0.45, C:0.08, G:0.00, T:0.47
Consensus pattern (16 bp):
ATATTATTATAAATTC
Found at i:11813863 original size:15 final size:15
Alignment explanation
Indices: 11813815--11813862 Score: 73
Period size: 16 Copynumber: 3.3 Consensus size: 15
11813805 ATAATATCAT
11813815 TATAAATTCATATTA
1 TATAAATTCATATTA
11813830 TCATAAATTCATATTA
1 T-ATAAATTCATATTA
11813846 TATAAATT-ATATT-
1 TATAAATTCATATTA
11813859 TATA
1 TATA
11813863 TGTCATTAAT
Statistics
Matches: 32, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
13 4 0.12
14 5 0.16
15 8 0.25
16 15 0.47
ACGTcount: A:0.46, C:0.06, G:0.00, T:0.48
Consensus pattern (15 bp):
TATAAATTCATATTA
Found at i:11819176 original size:29 final size:29
Alignment explanation
Indices: 11819143--11819302 Score: 180
Period size: 29 Copynumber: 5.5 Consensus size: 29
11819133 GTGACGAGAT
11819143 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
11819172 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
11819201 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
* ** * ***
11819230 CGGCACTGGGTGTGCGA-GCTCGAAGGGTA
1 TGGCACTAAGTGTGC-ATGCTGGAAATATA
* ** * *
11819259 TGGCACTATGTGTGCGGGCT-TAAATCACA
1 TGGCACTAAGTGTGCATGCTGGAAAT-ATA
11819288 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
11819303 GAAATCGAGT
Statistics
Matches: 111, Mismatches: 17, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
28 2 0.02
29 108 0.97
30 1 0.01
ACGTcount: A:0.26, C:0.17, G:0.31, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:11827264 original size:29 final size:29
Alignment explanation
Indices: 11827231--11827390 Score: 180
Period size: 29 Copynumber: 5.5 Consensus size: 29
11827221 GTGACGAGAT
11827231 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
11827260 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
11827289 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
* ** * ***
11827318 CGGCACTGGGTGTGCGA-GCTCGAAGGGTA
1 TGGCACTAAGTGTGC-ATGCTGGAAATATA
* ** * *
11827347 TGGCACTATGTGTGCGGGCT-TAAATCACA
1 TGGCACTAAGTGTGCATGCTGGAAAT-ATA
11827376 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
11827391 GAAATCGAGT
Statistics
Matches: 111, Mismatches: 17, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
28 2 0.02
29 108 0.97
30 1 0.01
ACGTcount: A:0.26, C:0.17, G:0.31, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:11831282 original size:23 final size:23
Alignment explanation
Indices: 11831252--11831298 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
11831242 ATACACGGAT
*
11831252 TCCACCCAAATACAC-CAGAATA
1 TCCACCCAAACACACGCAGAATA
*
11831274 TCCAGCCCAAACACACGCGGAATA
1 TCCA-CCCAAACACACGCAGAATA
11831298 T
1 T
11831299 TATAAATCCT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
22 4 0.19
23 10 0.48
24 7 0.33
ACGTcount: A:0.40, C:0.36, G:0.11, T:0.13
Consensus pattern (23 bp):
TCCACCCAAACACACGCAGAATA
Found at i:11832335 original size:15 final size:15
Alignment explanation
Indices: 11832312--11832348 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
11832302 TAGCTTTTGT
*
11832312 TTCTTTTTCCTTTTA
1 TTCTATTTCCTTTTA
11832327 TTCTATTTCCTTTTA
1 TTCTATTTCCTTTTA
11832342 TT-TATTT
1 TTCTATTT
11832349 ATTTTATTTG
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
14 5 0.24
15 16 0.76
ACGTcount: A:0.11, C:0.16, G:0.00, T:0.73
Consensus pattern (15 bp):
TTCTATTTCCTTTTA
Found at i:11832825 original size:16 final size:16
Alignment explanation
Indices: 11832806--11832856 Score: 70
Period size: 16 Copynumber: 3.3 Consensus size: 16
11832796 TAATAATATA
*
11832806 ATATCATTATAAATTC
1 ATATTATTATAAATTC
*
11832822 ATATTATCATAAATTC
1 ATATTATTATAAATTC
11832838 ATATTA-TATAAATT-
1 ATATTATTATAAATTC
11832852 ATATT
1 ATATT
11832857 TATATGTCAT
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
14 5 0.16
15 7 0.22
16 20 0.62
ACGTcount: A:0.45, C:0.08, G:0.00, T:0.47
Consensus pattern (16 bp):
ATATTATTATAAATTC
Found at i:11832861 original size:15 final size:15
Alignment explanation
Indices: 11832813--11832860 Score: 73
Period size: 16 Copynumber: 3.3 Consensus size: 15
11832803 ATAATATCAT
11832813 TATAAATTCATATTA
1 TATAAATTCATATTA
11832828 TCATAAATTCATATTA
1 T-ATAAATTCATATTA
11832844 TATAAATT-ATATT-
1 TATAAATTCATATTA
11832857 TATA
1 TATA
11832861 TGTCATTAAT
Statistics
Matches: 32, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
13 4 0.12
14 5 0.16
15 8 0.25
16 15 0.47
ACGTcount: A:0.46, C:0.06, G:0.00, T:0.48
Consensus pattern (15 bp):
TATAAATTCATATTA
Found at i:11837432 original size:27 final size:27
Alignment explanation
Indices: 11837383--11837481 Score: 85
Period size: 27 Copynumber: 3.6 Consensus size: 27
11837373 TTAGAATACT
* *
11837383 TTAGTTTACTAAAATTACCGAAACACCC
1 TTAGTTT-GTAAAATTACTGAAACACCC
* *
11837411 TTAGTTTGTAAAAATACTGAAATACCC
1 TTAGTTTGTAAAATTACTGAAACACCC
* *
11837438 -TCGATTTGTAAAATTACTGAAATA-CC
1 TTAG-TTTGTAAAATTACTGAAACACCC
* *
11837464 TTCGACTTGTAAAATTAC
1 TTAG-TTTGTAAAATTAC
11837482 CAAAGTACCC
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
26 4 0.06
27 51 0.82
28 7 0.11
ACGTcount: A:0.38, C:0.18, G:0.10, T:0.33
Consensus pattern (27 bp):
TTAGTTTGTAAAATTACTGAAACACCC
Found at i:11837490 original size:27 final size:27
Alignment explanation
Indices: 11837416--11837481 Score: 105
Period size: 27 Copynumber: 2.4 Consensus size: 27
11837406 CACCCTTAGT
* *
11837416 TTGTAAAAATACTGAAATACCCTCGAT
1 TTGTAAAATTACTGAAATACCCTCGAC
*
11837443 TTGTAAAATTACTGAAATACCTTCGAC
1 TTGTAAAATTACTGAAATACCCTCGAC
11837470 TTGTAAAATTAC
1 TTGTAAAATTAC
11837482 CAAAGTACCC
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 36 1.00
ACGTcount: A:0.39, C:0.17, G:0.11, T:0.33
Consensus pattern (27 bp):
TTGTAAAATTACTGAAATACCCTCGAC
Found at i:11837506 original size:27 final size:27
Alignment explanation
Indices: 11837487--11837724 Score: 233
Period size: 27 Copynumber: 8.8 Consensus size: 27
11837477 ATTACCAAAG
*
11837487 TACCCCCGATTTACAGAATTATCGTTT
1 TACCCCCGATTTACAGAATTACCGTTT
*
11837514 TACCCCCGATTTACATAATTACCGTTT
1 TACCCCCGATTTACAGAATTACCGTTT
* **
11837541 TACCCTCGATTTACAGAATTATTGTTT
1 TACCCCCGATTTACAGAATTACCGTTT
* * *
11837568 TACCCTCGATTTATAAAATTACCGTTT
1 TACCCCCGATTTACAGAATTACCGTTT
*** *
11837595 TACCCTTAATTTACAGAATTACTGTTT
1 TACCCCCGATTTACAGAATTACCGTTT
* * *
11837622 TACCCTCGATTTACAAAATTATCGTTT
1 TACCCCCGATTTACAGAATTACCGTTT
** * **
11837649 TACCGTCGATTTATAGAATTACTATTT
1 TACCCCCGATTTACAGAATTACCGTTT
* ** **
11837676 TATCCTTGATTTACAGAATTACTATTT
1 TACCCCCGATTTACAGAATTACCGTTT
* *
11837703 TACCCTCGATTTACAAAATTAC
1 TACCCCCGATTTACAGAATTAC
11837725 AGAAATACCC
Statistics
Matches: 178, Mismatches: 33, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 178 1.00
ACGTcount: A:0.29, C:0.21, G:0.08, T:0.41
Consensus pattern (27 bp):
TACCCCCGATTTACAGAATTACCGTTT
Found at i:11837561 original size:81 final size:80
Alignment explanation
Indices: 11837487--11837724 Score: 305
Period size: 81 Copynumber: 2.9 Consensus size: 80
11837477 ATTACCAAAG
* * ** * *
11837487 TACCCCCGATTTACAGAATTATCGTTTTACCCCCGATTTACATAATTACCGTTTTACCCTCGATT
1 TACCCTCGATTTATAGAATTA-CGTTTTACCCTTGATTTACAGAATTACTGTTTTACCCTCGATT
* **
11837552 TACAGAATTATTGTTT
65 TACAAAATTACCGTTT
* *
11837568 TACCCTCGATTTATAAAATTACCGTTTTACCCTTAATTTACAGAATTACTGTTTTACCCTCGATT
1 TACCCTCGATTTATAGAATTA-CGTTTTACCCTTGATTTACAGAATTACTGTTTTACCCTCGATT
*
11837633 TACAAAATTATCGTTT
65 TACAAAATTACCGTTT
* * * *
11837649 TACCGTCGATTTATAGAATTACTATTTTATCCTTGATTTACAGAATTACTATTTTACCCTCGATT
1 TACCCTCGATTTATAGAATTAC-GTTTTACCCTTGATTTACAGAATTACTGTTTTACCCTCGATT
11837714 TACAAAATTAC
65 TACAAAATTAC
11837725 AGAAATACCC
Statistics
Matches: 138, Mismatches: 18, Indels: 2
0.87 0.11 0.01
Matches are distributed among these distances:
80 1 0.01
81 137 0.99
ACGTcount: A:0.29, C:0.21, G:0.08, T:0.41
Consensus pattern (80 bp):
TACCCTCGATTTATAGAATTACGTTTTACCCTTGATTTACAGAATTACTGTTTTACCCTCGATTT
ACAAAATTACCGTTT
Found at i:11837724 original size:54 final size:54
Alignment explanation
Indices: 11837487--11837724 Score: 307
Period size: 54 Copynumber: 4.4 Consensus size: 54
11837477 ATTACCAAAG
* * *
11837487 TACCCCCGATTTACAGAATTA-TCGTTTTACCCCCGATTTACATAATTACCGTTT
1 TACCCTCGATTTACAGAATTACT-GTTTTACCCTCGATTTACAAAATTACCGTTT
* *
11837541 TACCCTCGATTTACAGAATTATTGTTTTACCCTCGATTTATAAAATTACCGTTT
1 TACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTACAAAATTACCGTTT
** *
11837595 TACCCTTAATTTACAGAATTACTGTTTTACCCTCGATTTACAAAATTATCGTTT
1 TACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTACAAAATTACCGTTT
* * * * * * **
11837649 TACCGTCGATTTATAGAATTACTATTTTATCCTTGATTTACAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTACAAAATTACCGTTT
*
11837703 TACCCTCGATTTACAAAATTAC
1 TACCCTCGATTTACAGAATTAC
11837725 AGAAATACCC
Statistics
Matches: 160, Mismatches: 23, Indels: 2
0.86 0.12 0.01
Matches are distributed among these distances:
54 159 0.99
55 1 0.01
ACGTcount: A:0.29, C:0.21, G:0.08, T:0.41
Consensus pattern (54 bp):
TACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTACAAAATTACCGTTT
Found at i:11837750 original size:81 final size:80
Alignment explanation
Indices: 11837487--11837753 Score: 300
Period size: 81 Copynumber: 3.3 Consensus size: 80
11837477 ATTACCAAAG
* * * * * ** * *
11837487 TACCCCCGATTTACAGAATTATCGTTTTACCCCCGATTTACATAATTACCGTTTTACCCTCGATT
1 TACCCTCGATTTATAAAATTACCATTTTACCCTTGATTTACAGAATTACTGTTTTACCCTCGATT
* *
11837552 TACAGAATTATTGTTT
66 TACAAAATTA-CGTTT
* *
11837568 TACCCTCGATTTATAAAATTACCGTTTTACCCTTAATTTACAGAATTACTGTTTTACCCTCGATT
1 TACCCTCGATTTATAAAATTACCATTTTACCCTTGATTTACAGAATTACTGTTTTACCCTCGATT
11837633 TACAAAATTATCGTTT
66 TACAAAATTA-CGTTT
* * * * *
11837649 TACCGTCGATTTATAGAATTACTATTTTATCCTTGATTTACAGAATTACTATTTTACCCTCGATT
1 TACCCTCGATTTATAAAATTACCATTTTACCCTTGATTTACAGAATTACTGTTTTACCCTCGATT
***
11837714 TACAAAATTACAGAAA
66 TACAAAATTAC-GTTT
* *
11837730 TACCCTCAATTTGTAAAATTACCA
1 TACCCTCGATTTATAAAATTACCA
11837754 AAATACCCCT
Statistics
Matches: 159, Mismatches: 26, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
80 1 0.01
81 158 0.99
ACGTcount: A:0.31, C:0.21, G:0.08, T:0.40
Consensus pattern (80 bp):
TACCCTCGATTTATAAAATTACCATTTTACCCTTGATTTACAGAATTACTGTTTTACCCTCGATT
TACAAAATTACGTTT
Found at i:11837865 original size:54 final size:53
Alignment explanation
Indices: 11837745--11837947 Score: 169
Period size: 54 Copynumber: 3.7 Consensus size: 53
11837735 TCAATTTGTA
* **
11837745 AAATTACCA-AAATACCC-CTAGTTTGTAAAATTACCAAAATACCACTGGTTTGTG
1 AAATTA-CAGAAATACCCTC-AATTTGTAAAATTACCAAAATACCACTGGTTT-AC
* * *
11837799 AAATTACCGAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTGATTTAC
1 AAATTACAGAAATACCCTCAATTTGTAAAATTACCAAAATACCACTGGTTTAC
* * * ** *
11837852 AAAGTTACAGAAATACCCTTGACTTTCTAAAAATTATAAAAATACCATTGGTTTAC
1 AAA-TTACAGAAATACCC-TCAATTTGT-AAAATTACCAAAATACCACTGGTTTAC
* * * *
11837908 AAAATTACTA-AAATACCCTTAGTTTGTAGATTTACCAAAA
1 -AAATTAC-AGAAATACCCTCAATTTGTAAAATTACCAAAA
11837948 CACCCTTGTA
Statistics
Matches: 120, Mismatches: 22, Indels: 14
0.77 0.14 0.09
Matches are distributed among these distances:
53 4 0.03
54 65 0.54
55 13 0.11
56 34 0.28
57 4 0.03
ACGTcount: A:0.42, C:0.19, G:0.08, T:0.31
Consensus pattern (53 bp):
AAATTACAGAAATACCCTCAATTTGTAAAATTACCAAAATACCACTGGTTTAC
Found at i:11837932 original size:27 final size:27
Alignment explanation
Indices: 11837716--11837954 Score: 146
Period size: 27 Copynumber: 8.8 Consensus size: 27
11837706 CCTCGATTTA
* *
11837716 CAAAATTA-CAGAAATACCCTCAATTTG
1 CAAAATTACCA-AAATACCCTTAGTTTG
* *
11837743 TAAAATTACCAAAATACCCCTAGTTTG
1 CAAAATTACCAAAATACCCTTAGTTTG
* *
11837770 TAAAATTACCAAAATACCAC-TGGTTTG
1 CAAAATTACCAAAATACC-CTTAGTTTG
** * * *
11837797 TGAAATTACCGAAATACCCTCAATTTG
1 CAAAATTACCAAAATACCCTTAGTTTG
* * *
11837824 TAAAATTACCAAAATACCCCT-GATTTA
1 CAAAATTACCAAAATACCCTTAG-TTTG
* *
11837851 CAAAGTTA-CAGAAATACCCTTGACTTT-
1 CAAAATTACCA-AAATACCCTT-AGTTTG
** * * *
11837878 CTAAAAATTATAAAAATACCATTGGTTTA
1 C--AAAATTACCAAAATACCCTTAGTTTG
*
11837907 CAAAATTACTAAAATACCCTTAGTTTG
1 CAAAATTACCAAAATACCCTTAGTTTG
* * * *
11837934 TAGATTTACCAAAACACCCTT
1 CAAAATTACCAAAATACCCTT
11837955 GTAGGATGAA
Statistics
Matches: 166, Mismatches: 35, Indels: 22
0.74 0.16 0.10
Matches are distributed among these distances:
26 3 0.02
27 137 0.83
28 9 0.05
29 16 0.10
30 1 0.01
ACGTcount: A:0.41, C:0.21, G:0.08, T:0.30
Consensus pattern (27 bp):
CAAAATTACCAAAATACCCTTAGTTTG
Found at i:11838077 original size:27 final size:27
Alignment explanation
Indices: 11837986--11838077 Score: 105
Period size: 27 Copynumber: 3.4 Consensus size: 27
11837976 ACCCCTATTA
* *
11837986 GGTAAAAAGACCGTAAAGCCCCTGTAG
1 GGTAAAATGACCGTAAAGCCCCTGTAT
* * *
11838013 GGTAAAGTAACCGTAAAGCCCCTGTAA
1 GGTAAAATGACCGTAAAGCCCCTGTAT
* *
11838040 GGTAAAGTGACCTTAATA-CCCCTGTAT
1 GGTAAAATGACCGTAA-AGCCCCTGTAT
11838067 GGTAAAATGAC
1 GGTAAAATGAC
11838078 AAATATGCCC
Statistics
Matches: 56, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
27 55 0.98
28 1 0.02
ACGTcount: A:0.36, C:0.21, G:0.23, T:0.21
Consensus pattern (27 bp):
GGTAAAATGACCGTAAAGCCCCTGTAT
Found at i:11839432 original size:24 final size:23
Alignment explanation
Indices: 11839400--11839564 Score: 215
Period size: 23 Copynumber: 7.0 Consensus size: 23
11839390 AGGAAGTGCA
11839400 AAAAGGGCTCATGCCCCAGTTATT
1 AAAAGGGCT-ATGCCCCAGTTATT
11839424 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGC-TATGCCCCAGTTATT
11839448 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGC-TATGCCCCAGTTATT
*
11839472 -AAAGGGCTTATGCCCTAGTTATT
1 AAAAGGGC-TATGCCCCAGTTATT
*
11839495 AAAAGGGCTTTGCCCCAGTTATT
1 AAAAGGGCTATGCCCCAGTTATT
* * *
11839518 AAAAGGGCTTTGCCCTAGTTGTT
1 AAAAGGGCTATGCCCCAGTTATT
*
11839541 AAAAGAGGCTAGGCCTCCAGTTAT
1 AAAAG-GGCTATGCC-CCAGTTAT
11839565 ATGATAAAGC
Statistics
Matches: 128, Mismatches: 9, Indels: 7
0.89 0.06 0.05
Matches are distributed among these distances:
23 61 0.48
24 60 0.47
25 7 0.05
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.29
Consensus pattern (23 bp):
AAAAGGGCTATGCCCCAGTTATT
Found at i:11839479 original size:23 final size:24
Alignment explanation
Indices: 11839400--11839564 Score: 239
Period size: 24 Copynumber: 7.0 Consensus size: 24
11839390 AGGAAGTGCA
*
11839400 AAAAGGGCTCATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
11839424 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
11839448 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
11839472 -AAAGGGCTTATGCCCTAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
11839495 AAAAGGGCTT-TGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
* *
11839518 AAAAGGGCTT-TGCCCTAGTTGTT
1 AAAAGGGCTTATGCCCCAGTTATT
*
11839541 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
11839565 ATGATAAAGC
Statistics
Matches: 129, Mismatches: 8, Indels: 7
0.90 0.06 0.05
Matches are distributed among these distances:
23 61 0.47
24 62 0.48
25 6 0.05
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.29
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:11839494 original size:47 final size:48
Alignment explanation
Indices: 11839400--11839564 Score: 248
Period size: 47 Copynumber: 3.5 Consensus size: 48
11839390 AGGAAGTGCA
* *
11839400 AAAAGGGCTCATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCTAGTTATT
11839448 AAAAGGGCTTATGCCCCAGTTATT-AAAGGGCTTATGCCCTAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCTAGTTATT
*
11839495 AAAAGGGCTT-TGCCCCAGTTATTAAAAGGGCTT-TGCCCTAGTTGTT
1 AAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCTAGTTATT
*
11839541 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
11839565 ATGATAAAGC
Statistics
Matches: 109, Mismatches: 4, Indels: 8
0.90 0.03 0.07
Matches are distributed among these distances:
46 31 0.28
47 47 0.43
48 31 0.28
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.29
Consensus pattern (48 bp):
AAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCTAGTTATT
Found at i:11839792 original size:31 final size:31
Alignment explanation
Indices: 11839757--11839820 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
11839747 CATTTACAGT
*
11839757 AAAGGCTTCGGCCCAGTAATATGAAATTTGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
* **
11839788 AAAGGCTTCGGTCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
11839819 AA
1 AA
11839821 TATGAAAAGG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.36, C:0.14, G:0.23, T:0.27
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:11842405 original size:29 final size:29
Alignment explanation
Indices: 11842381--11842474 Score: 170
Period size: 29 Copynumber: 3.2 Consensus size: 29
11842371 TCGCACACCC
*
11842381 AGTGCCGTATATTTCCAGCATGCACACTT
1 AGTGCCATATATTTCCAGCATGCACACTT
11842410 AGTGCCATATATTTCCAGCATGCACACTT
1 AGTGCCATATATTTCCAGCATGCACACTT
*
11842439 AGTGCCATATATTTCCAGCACGCACACTT
1 AGTGCCATATATTTCCAGCATGCACACTT
11842468 AGTGCCA
1 AGTGCCA
11842475 ATCTCGTCAC
Statistics
Matches: 63, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 63 1.00
ACGTcount: A:0.27, C:0.29, G:0.16, T:0.29
Consensus pattern (29 bp):
AGTGCCATATATTTCCAGCATGCACACTT
Found at i:11842406 original size:58 final size:58
Alignment explanation
Indices: 11842343--11842474 Score: 167
Period size: 58 Copynumber: 2.3 Consensus size: 58
11842333 GATTTAAGCC
* * * *
11842343 CGCACACATAGTGCCATACCCTTCGAGC-TCGCACACCCAGTGCCGTATATTTCCAGCA
1 CGCACACTTAGTGCCATACACTTCCAGCAT-GCACACCCAGTGCCATATATTTCCAGCA
* * * **
11842401 TGCACACTTAGTGCCATATATTTCCAGCATGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATACACTTCCAGCATGCACACCCAGTGCCATATATTTCCAGCA
11842459 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
11842475 ATCTCGTCAC
Statistics
Matches: 63, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
58 62 0.98
59 1 0.02
ACGTcount: A:0.26, C:0.33, G:0.16, T:0.25
Consensus pattern (58 bp):
CGCACACTTAGTGCCATACACTTCCAGCATGCACACCCAGTGCCATATATTTCCAGCA
Found at i:11847141 original size:25 final size:25
Alignment explanation
Indices: 11847115--11847175 Score: 72
Period size: 24 Copynumber: 2.5 Consensus size: 25
11847105 TTTGTTGGCT
* *
11847115 TTTTTTTCT-TTTCCTTTTATTTCC
1 TTTTATTCTATTTACTTTTATTTCC
*
11847139 TTTTATTCTATTTACTTTTATTT-A
1 TTTTATTCTATTTACTTTTATTTCC
*
11847163 TTTTATTTTATTT
1 TTTTATTCTATTT
11847176 TATTTGTTTT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
24 20 0.62
25 12 0.38
ACGTcount: A:0.13, C:0.11, G:0.00, T:0.75
Consensus pattern (25 bp):
TTTTATTCTATTTACTTTTATTTCC
Found at i:11847160 original size:10 final size:9
Alignment explanation
Indices: 11847140--11847187 Score: 60
Period size: 9 Copynumber: 5.1 Consensus size: 9
11847130 TTTATTTCCT
*
11847140 TTTATTCTA
1 TTTATTTTA
11847149 TTTACTTTTA
1 TTTA-TTTTA
11847159 TTTATTTTA
1 TTTATTTTA
11847168 TTTTATTTTA
1 -TTTATTTTA
*
11847178 TTTGTTTTA
1 TTTATTTTA
11847187 T
1 T
11847188 ATTAGTAATT
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
9 18 0.51
10 17 0.49
ACGTcount: A:0.19, C:0.04, G:0.02, T:0.75
Consensus pattern (9 bp):
TTTATTTTA
Found at i:11847162 original size:19 final size:19
Alignment explanation
Indices: 11847140--11847180 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
11847130 TTTATTTCCT
11847140 TTTATTCTA-TTTACTTTTA
1 TTTATTCTATTTTA-TTTTA
*
11847159 TTTATTTTATTTTATTTTA
1 TTTATTCTATTTTATTTTA
11847178 TTT
1 TTT
11847181 GTTTTATATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 16 0.80
20 4 0.20
ACGTcount: A:0.20, C:0.05, G:0.00, T:0.76
Consensus pattern (19 bp):
TTTATTCTATTTTATTTTA
Found at i:11847167 original size:5 final size:5
Alignment explanation
Indices: 11847129--11847180 Score: 54
Period size: 5 Copynumber: 10.6 Consensus size: 5
11847119 TTTCTTTTCC
** *
11847129 TTTTA TTTCC TTTTA TTCTA -TTTA CTTTTA -TTTA TTTTA TTTTA TTTTA
1 TTTTA TTTTA TTTTA TTTTA TTTTA -TTTTA TTTTA TTTTA TTTTA TTTTA
11847178 TTT
1 TTT
11847181 GTTTTATATT
Statistics
Matches: 38, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
4 7 0.18
5 27 0.71
6 4 0.11
ACGTcount: A:0.17, C:0.08, G:0.00, T:0.75
Consensus pattern (5 bp):
TTTTA
Found at i:11847332 original size:13 final size:13
Alignment explanation
Indices: 11847314--11847348 Score: 70
Period size: 13 Copynumber: 2.7 Consensus size: 13
11847304 AAAAGTCATA
11847314 TAATTTAATTATT
1 TAATTTAATTATT
11847327 TAATTTAATTATT
1 TAATTTAATTATT
11847340 TAATTTAAT
1 TAATTTAAT
11847349 AAATATCTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (13 bp):
TAATTTAATTATT
Found at i:11847658 original size:16 final size:16
Alignment explanation
Indices: 11847639--11847689 Score: 70
Period size: 16 Copynumber: 3.3 Consensus size: 16
11847629 TAATAATATA
*
11847639 ATATCATTATAAATTC
1 ATATTATTATAAATTC
*
11847655 ATATTATCATAAATTC
1 ATATTATTATAAATTC
11847671 ATATTA-TATAAATT-
1 ATATTATTATAAATTC
11847685 ATATT
1 ATATT
11847690 TATATATCAT
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
14 5 0.16
15 7 0.22
16 20 0.62
ACGTcount: A:0.45, C:0.08, G:0.00, T:0.47
Consensus pattern (16 bp):
ATATTATTATAAATTC
Found at i:11847664 original size:19 final size:16
Alignment explanation
Indices: 11847647--11847689 Score: 72
Period size: 16 Copynumber: 2.8 Consensus size: 16
11847637 TAATATCATT
11847647 ATAAATTCATATTATC
1 ATAAATTCATATTATC
11847663 ATAAATTCATATTAT-
1 ATAAATTCATATTATC
11847678 ATAAATT-ATATT
1 ATAAATTCATATT
11847690 TATATATCAT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
14 5 0.19
15 7 0.26
16 15 0.56
ACGTcount: A:0.47, C:0.07, G:0.00, T:0.47
Consensus pattern (16 bp):
ATAAATTCATATTATC
Found at i:11847683 original size:15 final size:15
Alignment explanation
Indices: 11847646--11847695 Score: 75
Period size: 15 Copynumber: 3.3 Consensus size: 15
11847636 ATAATATCAT
11847646 TATAAATTCATATTA
1 TATAAATTCATATTA
11847661 TCATAAATTCATATTA
1 T-ATAAATTCATATTA
11847677 TATAAATT-ATATTTA
1 TATAAATTCATA-TTA
11847692 TATA
1 TATA
11847696 TCATTAATTA
Statistics
Matches: 33, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
14 3 0.09
15 15 0.45
16 15 0.45
ACGTcount: A:0.46, C:0.06, G:0.00, T:0.48
Consensus pattern (15 bp):
TATAAATTCATATTA
Found at i:11848735 original size:31 final size:31
Alignment explanation
Indices: 11848697--11848806 Score: 184
Period size: 31 Copynumber: 3.5 Consensus size: 31
11848687 TTTAACGGTT
11848697 ACTGGGCCGAAGCCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
**
11848728 ACTGGGCCGAAGGTTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
*
11848759 ATTGGGCCGAAGCCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
*
11848790 ATTGGGCCGAAGCCTTT
1 ACTGGGCCGAAGCCTTT
11848807 ACTGTAAACA
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 74 1.00
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (31 bp):
ACTGGGCCGAAGCCTTTTCATAAATCATATC
Found at i:11848877 original size:42 final size:42
Alignment explanation
Indices: 11848830--11848921 Score: 139
Period size: 42 Copynumber: 2.2 Consensus size: 42
11848820 TGGCCCTTAG
* ** * *
11848830 GCCCATTTCAATATCACATGTAATGTCAATGGATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGAATGCAA
11848872 GCCCATTTCAATATCACATGAAATACCAATGAATGAATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGAATGCAA
11848914 GCCCATTT
1 GCCCATTT
11848922 GGGGAGACTA
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.36, C:0.22, G:0.14, T:0.28
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGAAATACCAATGAATGAATGCAA
Found at i:11849137 original size:26 final size:26
Alignment explanation
Indices: 11849066--11849188 Score: 187
Period size: 26 Copynumber: 4.8 Consensus size: 26
11849056 CCTCTTTAAT
**
11849066 AACTGGGGCA-AAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCAATA
11849091 AACTGGGGCA-AAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAATA
**
11849116 AACTGGGGCATAAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCAATA
*
11849142 AACTGGGGCATAAGCCCTTTTTAATA
1 AACTGGGGCATAAGCCCTTTTCAATA
11849168 AACTGGGGCATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTT
11849189 GCAGTTCCTC
Statistics
Matches: 90, Mismatches: 7, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
25 33 0.37
26 57 0.63
ACGTcount: A:0.27, C:0.23, G:0.24, T:0.27
Consensus pattern (26 bp):
AACTGGGGCATAAGCCCTTTTCAATA
Found at i:11849178 original size:52 final size:51
Alignment explanation
Indices: 11849060--11849188 Score: 226
Period size: 52 Copynumber: 2.5 Consensus size: 51
11849050 GCCTAGCCTC
11849060 TTTAAT-AACTGGGGCA-AAGCCCTTTTCGGTAAACTGGGGCAAAGCCCTT
1 TTTAATAAACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCAAAGCCCTT
*
11849109 TTCAATAAACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTT
1 TTTAATAAACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCA-AAGCCCTT
11849161 TTTAATAAACTGGGGCATAAGCCCTTTT
1 TTTAATAAACTGGGGCATAAGCCCTTTT
11849189 GCAGTTCCTC
Statistics
Matches: 75, Mismatches: 2, Indels: 3
0.94 0.03 0.04
Matches are distributed among these distances:
49 5 0.07
50 10 0.13
51 25 0.33
52 35 0.47
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (51 bp):
TTTAATAAACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCAAAGCCCTT
Found at i:11850065 original size:26 final size:26
Alignment explanation
Indices: 11849999--11850065 Score: 73
Period size: 27 Copynumber: 2.5 Consensus size: 26
11849989 GGGCATATTC
11849999 GTCATTTTACCATACAAGGGTATTACG
1 GTCATTTTACC-TACAAGGGTATTACG
* *
11850026 GTCACTTTATCCTACAGGGGCT-TTACG
1 GTCATTTTA-CCTACAAGGG-TATTACG
*
11850053 GTCTTTTTACCTA
1 GTCATTTTACCTA
11850066 TTAGGGGTAT
Statistics
Matches: 34, Mismatches: 4, Indels: 5
0.79 0.09 0.12
Matches are distributed among these distances:
26 4 0.12
27 27 0.79
28 3 0.09
ACGTcount: A:0.22, C:0.22, G:0.18, T:0.37
Consensus pattern (26 bp):
GTCATTTTACCTACAAGGGTATTACG
Found at i:11850147 original size:27 final size:27
Alignment explanation
Indices: 11850117--11850331 Score: 123
Period size: 27 Copynumber: 7.9 Consensus size: 27
11850107 GAAAATCTAC
*
11850117 AAACCAAGGGTATTTCAGTAATTTTGT
1 AAACCAAGGGTATTTCAGTAATTTTAT
* *
11850144 AAACCAATGGTATTTCTA-TAATTTTTAG
1 AAACCAAGGGTATTTC-AGTAA-TTTTAT
* *
11850172 AAAGTCAAGGGTATTTCTA-TAATTTTGT
1 AAA-CCAAGGGTATTTC-AGTAATTTTAT
* * ** *
11850200 AAATCAGGGGTATTTTGGTAATTTTAC
1 AAACCAAGGGTATTTCAGTAATTTTAT
*** * * *
11850227 AAATTGAGGGTATTTCGGTAATTTCAC
1 AAACCAAGGGTATTTCAGTAATTTTAT
* *
11850254 AAA-CTAGTGGTATTTCAGTAATTTTAC
1 AAACCAAG-GGTATTTCAGTAATTTTAT
* * ** *
11850281 AAACTAGGGGTATTTTGGTAATTCTAT
1 AAACCAAGGGTATTTCAGTAATTTTAT
**
11850308 CCTA-CAAGGGTATTTCAGTAATTT
1 -AAACCAAGGGTATTTCAGTAATTT
11850332 CACAATCGAG
Statistics
Matches: 146, Mismatches: 35, Indels: 14
0.75 0.18 0.07
Matches are distributed among these distances:
26 2 0.01
27 111 0.76
28 17 0.12
29 16 0.11
ACGTcount: A:0.32, C:0.10, G:0.18, T:0.40
Consensus pattern (27 bp):
AAACCAAGGGTATTTCAGTAATTTTAT
Found at i:11850372 original size:27 final size:27
Alignment explanation
Indices: 11850335--11850586 Score: 317
Period size: 27 Copynumber: 9.3 Consensus size: 27
11850325 GTAATTTCAC
* *
11850335 AATCGAGGGTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTATA
* * *
11850362 AA-CTGAGGGTAAAATGGTAATTTTGTA
1 AATC-GAGGGTAAAACGGTAATTCTATA
* *
11850389 AATCGAGGGTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTATA
*
11850416 AATCGAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTATA
11850443 AATCGAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTATA
* * *
11850470 AATCGAGGATGAAACAGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTATA
* * * *
11850497 AATCGAGGATAAAACGATAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTATA
*
11850524 AATCGAGGGTGAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTATA
* * *
11850551 AATCGAGGATAAAATGGTAATTCTACA
1 AATCGAGGGTAAAACGGTAATTCTATA
11850578 AATCGAGGG
1 AATCGAGGG
11850587 CATTTTAGTA
Statistics
Matches: 199, Mismatches: 24, Indels: 4
0.88 0.11 0.02
Matches are distributed among these distances:
26 1 0.01
27 197 0.99
28 1 0.01
ACGTcount: A:0.40, C:0.09, G:0.23, T:0.28
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTCTATA
Found at i:11857966 original size:27 final size:27
Alignment explanation
Indices: 11857934--11857987 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
11857924 ACCTCCTAAT
11857934 TGATAAAATGACTATTATGCCCCTATG
1 TGATAAAATGACTATTATGCCCCTATG
11857961 TGATAAAATGACTATTATGCCCCTATG
1 TGATAAAATGACTATTATGCCCCTATG
11857988 AAATGTATGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.33, C:0.19, G:0.15, T:0.33
Consensus pattern (27 bp):
TGATAAAATGACTATTATGCCCCTATG
Found at i:11861008 original size:20 final size:20
Alignment explanation
Indices: 11860985--11861033 Score: 62
Period size: 20 Copynumber: 2.5 Consensus size: 20
11860975 AATCAAGTGC
11860985 AAATGATTTAAACCAAGTCA
1 AAATGATTTAAACCAAGTCA
* * *
11861005 AAATGATTTCAATCAAGTTA
1 AAATGATTTAAACCAAGTCA
*
11861025 AAATCATTT
1 AAATGATTT
11861034 TTAAATGATG
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.47, C:0.12, G:0.08, T:0.33
Consensus pattern (20 bp):
AAATGATTTAAACCAAGTCA
Found at i:11861910 original size:31 final size:31
Alignment explanation
Indices: 11861872--11861934 Score: 126
Period size: 31 Copynumber: 2.0 Consensus size: 31
11861862 GGTAGTGGAG
11861872 TAGGCAATTAGGGCTGAACCACTCTAAATCT
1 TAGGCAATTAGGGCTGAACCACTCTAAATCT
11861903 TAGGCAATTAGGGCTGAACCACTCTAAATCT
1 TAGGCAATTAGGGCTGAACCACTCTAAATCT
11861934 T
1 T
11861935 TGTGTACTCT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.32, C:0.22, G:0.19, T:0.27
Consensus pattern (31 bp):
TAGGCAATTAGGGCTGAACCACTCTAAATCT
Found at i:11864220 original size:40 final size:40
Alignment explanation
Indices: 11864130--11864318 Score: 224
Period size: 40 Copynumber: 4.8 Consensus size: 40
11864120 ACCCAATTAT
* *** *
11864130 CTTCGGGATTTAG-CCGGATATAACCACTCGCAC-AAGGC
1 CTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGC
* * * * *
11864168 CTTCGGGTCTTAGTCCGGATATGGTCACTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGC
11864208 CTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGC
*
11864248 CTTCGGGGCTTAGCCCGGA-ATTAGTAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATGC
*
11864288 CTTCGGGGCTTAGCCCGGA-ATTAGTAACTCG
1 CTTCGGGACTTAGCCCGGATA-TAGTAACTCG
11864319 GAATTAGTAA
Statistics
Matches: 135, Mismatches: 13, Indels: 4
0.89 0.09 0.03
Matches are distributed among these distances:
38 11 0.08
39 17 0.13
40 107 0.79
ACGTcount: A:0.24, C:0.27, G:0.25, T:0.24
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGC
Found at i:11864322 original size:14 final size:14
Alignment explanation
Indices: 11864303--11864332 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
11864293 GGGCTTAGCC
11864303 CGGAATTAGTAACT
1 CGGAATTAGTAACT
11864317 CGGAATTAGTAACT
1 CGGAATTAGTAACT
11864331 CG
1 CG
11864333 CACAAATGCC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.33, C:0.17, G:0.23, T:0.27
Consensus pattern (14 bp):
CGGAATTAGTAACT
Found at i:11864345 original size:54 final size:54
Alignment explanation
Indices: 11864263--11864372 Score: 211
Period size: 54 Copynumber: 2.0 Consensus size: 54
11864253 GGGCTTAGCC
*
11864263 CGGAATTAGTAACTCGCACAAATGCCTTCGGGGCTTAGCCCGGAATTAGTAACT
1 CGGAATTAGTAACTCGCACAAATGCCTTCGGGGCTTAGCCCAGAATTAGTAACT
11864317 CGGAATTAGTAACTCGCACAAATGCCTTCGGGGCTTAGCCCAGAATTAGTAACT
1 CGGAATTAGTAACTCGCACAAATGCCTTCGGGGCTTAGCCCAGAATTAGTAACT
11864371 CG
1 CG
11864373 CACAAATGCC
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
54 55 1.00
ACGTcount: A:0.28, C:0.25, G:0.24, T:0.24
Consensus pattern (54 bp):
CGGAATTAGTAACTCGCACAAATGCCTTCGGGGCTTAGCCCAGAATTAGTAACT
Found at i:11864374 original size:40 final size:39
Alignment explanation
Indices: 11864319--11864433 Score: 167
Period size: 40 Copynumber: 2.9 Consensus size: 39
11864309 TAGTAACTCG
*
11864319 GAATTAGTAACTCGCACAAATGCCTTCGGGGCTTAGCCC
1 GAATTAGTAACTCGCACAAATGCCTTCGGGACTTAGCCC
11864358 AGAATTAGTAACTCGCACAAATGCCTTCGGGACTTAGCCC
1 -GAATTAGTAACTCGCACAAATGCCTTCGGGACTTAGCCC
* * * *
11864398 GAAATTAATCACTAGCACAAATGTCTTCGGGACTTA
1 G-AATTAGTAACTCGCACAAATGCCTTCGGGACTTA
11864434 ACCCCGTTAG
Statistics
Matches: 69, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
39 1 0.01
40 68 0.99
ACGTcount: A:0.30, C:0.25, G:0.20, T:0.24
Consensus pattern (39 bp):
GAATTAGTAACTCGCACAAATGCCTTCGGGACTTAGCCC
Found at i:11864394 original size:94 final size:94
Alignment explanation
Indices: 11864229--11864404 Score: 325
Period size: 94 Copynumber: 1.9 Consensus size: 94
11864219 AGCCCGGATA
*
11864229 TAGTAACTCGCACAAATGCCTTCGGGGCTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGG
1 TAGTAACTCGCACAAATGCCTTCGGGGCTTAGCCCAGAATTAGTAACTCGCACAAATGCCTTCGG
* *
11864294 GGCTTAGCCCGGAATTAGTAACTCGGAAT
66 GACTTAGCCCGAAATTAGTAACTCGGAAT
11864323 TAGTAACTCGCACAAATGCCTTCGGGGCTTAGCCCAGAATTAGTAACTCGCACAAATGCCTTCGG
1 TAGTAACTCGCACAAATGCCTTCGGGGCTTAGCCCAGAATTAGTAACTCGCACAAATGCCTTCGG
11864388 GACTTAGCCCGAAATTA
66 GACTTAGCCCGAAATTA
11864405 ATCACTAGCA
Statistics
Matches: 79, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
94 79 1.00
ACGTcount: A:0.28, C:0.26, G:0.23, T:0.23
Consensus pattern (94 bp):
TAGTAACTCGCACAAATGCCTTCGGGGCTTAGCCCAGAATTAGTAACTCGCACAAATGCCTTCGG
GACTTAGCCCGAAATTAGTAACTCGGAAT
Found at i:11866697 original size:22 final size:20
Alignment explanation
Indices: 11866649--11866697 Score: 53
Period size: 22 Copynumber: 2.2 Consensus size: 20
11866639 TCTTAACTAC
11866649 TCAAATCCATAGCCAAAACA
1 TCAAATCCATAGCCAAAACA
*
11866669 TACCAAATCTATATGCCAAAATCA
1 T--CAAATCCATA-GCCAAAA-CA
11866693 TCAAA
1 TCAAA
11866698 CTTACATTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 6
0.77 0.03 0.19
Matches are distributed among these distances:
20 1 0.04
22 13 0.54
23 7 0.29
24 3 0.12
ACGTcount: A:0.49, C:0.27, G:0.04, T:0.20
Consensus pattern (20 bp):
TCAAATCCATAGCCAAAACA
Found at i:11867888 original size:17 final size:17
Alignment explanation
Indices: 11867855--11867887 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
11867845 TTCAACCCTG
11867855 ATCTAAATCCAATTTTT
1 ATCTAAATCCAATTTTT
11867872 ATCTAAATCC-ATTTTT
1 ATCTAAATCCAATTTTT
11867888 TTTCTTTTAG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 6 0.38
17 10 0.62
ACGTcount: A:0.33, C:0.18, G:0.00, T:0.48
Consensus pattern (17 bp):
ATCTAAATCCAATTTTT
Found at i:11909416 original size:27 final size:27
Alignment explanation
Indices: 11909386--11909596 Score: 278
Period size: 27 Copynumber: 7.8 Consensus size: 27
11909376 ATTACCAAAG
*
11909386 TACCCCCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
11909413 TACCCTCGATGTACATAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* * *
11909440 TACCCCCGATTTACATAATTATCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
*
11909467 TACCCTCGACTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
*
11909494 TACCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* * ***
11909521 TACCCTCAATTTATAGAATTATTATTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
11909548 TACCCTTGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
*
11909575 TACCCTCGATTTACAAAATTAC
1 TACCCTCGATTTACAGAATTAC
11909597 TAATATACCC
Statistics
Matches: 161, Mismatches: 23, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 161 1.00
ACGTcount: A:0.28, C:0.24, G:0.09, T:0.39
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACCGTTT
Found at i:11909619 original size:27 final size:27
Alignment explanation
Indices: 11909589--11909689 Score: 105
Period size: 27 Copynumber: 3.7 Consensus size: 27
11909579 CTCGATTTAC
* *
11909589 AAAATTACTAATATACCCCTAGTTTGT
1 AAAATTACCAAAATACCCCTAGTTTGT
* *
11909616 AAAATTACCAAAATACCACTGGTTTGT
1 AAAATTACCAAAATACCCCTAGTTTGT
* * * * *
11909643 GAAATTATCGAAATA-CCTTCAATTTGT
1 AAAATTACCAAAATACCCCT-AGTTTGT
11909670 AAAATTACCAAAATACCCCT
1 AAAATTACCAAAATACCCCT
11909690 GATTTACAAA
Statistics
Matches: 57, Mismatches: 15, Indels: 3
0.76 0.20 0.04
Matches are distributed among these distances:
26 2 0.04
27 52 0.91
28 3 0.05
ACGTcount: A:0.41, C:0.20, G:0.08, T:0.32
Consensus pattern (27 bp):
AAAATTACCAAAATACCCCTAGTTTGT
Found at i:11909622 original size:81 final size:80
Alignment explanation
Indices: 11909386--11909622 Score: 262
Period size: 81 Copynumber: 2.9 Consensus size: 80
11909376 ATTACCAAAG
* * * * * *
11909386 TACCCCCGATTTACAGAATTACCGTTTTACCCTCGATGTACATAATTACCGTTTTACCCC-CGAT
1 TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACTGTTTTACCCCTAGTT
*
11909450 TTACATAATTATCGTTT
66 TTA-A-AATTATCATTT
* * *
11909467 TACCCTCGACTTACAGAATTACCGTTTTACCCTCGATTTACAGAATTACTGTTTTA-CCCTCAAT
1 TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACTGTTTTACCCCT-AGT
* *
11909531 TTATAGAATTATTATTT
65 TT-TAAAATTATCATTT
* * ** *
11909548 TACCCTTGATTTACAGAATTACTGTTTTACCCTCGATTTACAAAATTACTAATATACCCCTAGTT
1 TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACTGTTTTACCCCTAGTT
11909613 TGTAAAATTA
66 T-TAAAATTA
11909623 CCAAAATACC
Statistics
Matches: 131, Mismatches: 21, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
80 3 0.02
81 120 0.92
82 6 0.05
83 2 0.02
ACGTcount: A:0.29, C:0.23, G:0.09, T:0.39
Consensus pattern (80 bp):
TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACTGTTTTACCCCTAGTT
TTAAAATTATCATTT
Found at i:11909710 original size:54 final size:52
Alignment explanation
Indices: 11909611--11909771 Score: 153
Period size: 54 Copynumber: 2.9 Consensus size: 52
11909601 ATACCCCTAG
**
11909611 TTTGTAAAATTACCAAAATACCACTGGTTTGTGAAATTATCGAAATACCTTCAA
1 TTTGTAAAATTACCAAAATACCACTGGTTT-ACAAATTA-CGAAATACCTTCAA
* * * *
11909665 TTTGTAAAATTACCAAAATACCCCTGATTTACAAAGTTACAGAAATACCCTTGAC
1 TTTGTAAAATTACCAAAATACCACTGGTTTACAAA-TTAC-GAAATA-CCTTCAA
* * *
11909720 TTTCTAAAAATTA-TAGAAATACCATTGGTTTACAAAATTACTGAAATACCTT
1 TTTGT-AAAATTACCA-AAATACCACTGGTTTAC-AAATTAC-GAAATACCTT
11909772 TGGTTTGTAG
Statistics
Matches: 89, Mismatches: 12, Indels: 11
0.79 0.11 0.10
Matches are distributed among these distances:
53 4 0.04
54 37 0.42
55 14 0.16
56 31 0.35
57 3 0.03
ACGTcount: A:0.40, C:0.17, G:0.09, T:0.33
Consensus pattern (52 bp):
TTTGTAAAATTACCAAAATACCACTGGTTTACAAATTACGAAATACCTTCAA
Found at i:11909765 original size:27 final size:27
Alignment explanation
Indices: 11909726--11909777 Score: 79
Period size: 27 Copynumber: 1.9 Consensus size: 27
11909716 TGACTTTCTA
11909726 AAAATTATAGAAATACCATTGGTTTAC
1 AAAATTATAGAAATACCATTGGTTTAC
*
11909753 AAAATTACT-GAAATACCTTTGGTTT
1 AAAATTA-TAGAAATACCATTGGTTT
11909778 GTAGATTTAC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
27 22 0.96
28 1 0.04
ACGTcount: A:0.40, C:0.12, G:0.12, T:0.37
Consensus pattern (27 bp):
AAAATTATAGAAATACCATTGGTTTAC
Found at i:11909917 original size:27 final size:27
Alignment explanation
Indices: 11909839--11909910 Score: 110
Period size: 27 Copynumber: 2.7 Consensus size: 27
11909829 TAGGTAAAAA
11909839 GACCATAAAGCCCCTGTAGGGTAAAGT
1 GACCATAAAGCCCCTGTAGGGTAAAGT
* *
11909866 GACCGTAAAGCCCTTGTAGGGTAAAGT
1 GACCATAAAGCCCCTGTAGGGTAAAGT
11909893 GACCATAATA-CCCCTGTA
1 GACCATAA-AGCCCCTGTA
11909911 TAGTAAAATG
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
27 39 0.98
28 1 0.03
ACGTcount: A:0.32, C:0.24, G:0.24, T:0.21
Consensus pattern (27 bp):
GACCATAAAGCCCCTGTAGGGTAAAGT
Found at i:11911130 original size:25 final size:25
Alignment explanation
Indices: 11911083--11911130 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
11911073 TTATAAAATG
* *
11911083 AAAATGACCATTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
*
11911108 AAAATGACCATTATACCCTTAGG
1 AAAATGACCATTATACCCCTAGG
11911131 GTTTAAATAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.35, C:0.23, G:0.15, T:0.27
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:11911214 original size:11 final size:11
Alignment explanation
Indices: 11911178--11911233 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
11911168 CATGGTATGT
11911178 ATGATATGCAC
1 ATGATATGCAC
* *
11911189 ATGACATG--T
1 ATGATATGCAC
11911198 ATGATATGCAC
1 ATGATATGCAC
*
11911209 ATGATATG--T
1 ATGATATGCAC
11911218 ATGATATGCAC
1 ATGATATGCAC
11911229 ATGAT
1 ATGAT
11911234 GTATTCATAA
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:11911233 original size:20 final size:20
Alignment explanation
Indices: 11911167--11911233 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
11911157 ATTTTGATAA
*
11911167 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
*
11911187 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
11911207 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
11911227 ACATGAT
1 ACATGAT
11911234 GTATTCATAA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.34, C:0.12, G:0.21, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:11911309 original size:24 final size:24
Alignment explanation
Indices: 11911282--11911520 Score: 308
Period size: 24 Copynumber: 10.0 Consensus size: 24
11911272 GGAGGAAGTG
11911282 TAAAAGGGCTTATGCCCCAGTTAT
1 TAAAAGGGCTTATGCCCCAGTTAT
* ** *
11911306 TAAAAAGGTCTTACACCCTAGTTAT
1 T-AAAAGGGCTTATGCCCCAGTTAT
*
11911331 CAAAAGGGCTTATGCCCCAGTTAT
1 TAAAAGGGCTTATGCCCCAGTTAT
11911355 T-AAAGGGCTTATGCCCCAGTTAT
1 TAAAAGGGCTTATGCCCCAGTTAT
* *
11911378 CAAAAGGGCTTACGCCCCAGTTAT
1 TAAAAGGGCTTATGCCCCAGTTAT
11911402 TAAAA-GGCTTATGCCCCCAGTTAT
1 TAAAAGGGCTTATG-CCCCAGTTAT
11911426 T-AAAGGGCTTATGCCCCAGTTAT
1 TAAAAGGGCTTATGCCCCAGTTAT
*
11911449 T-AAAGGGCTTATGCCCTAGTTAT
1 TAAAAGGGCTTATGCCCCAGTTAT
* *
11911472 TAAAAGGGCTTTTGCCCGAGTTAT
1 TAAAAGGGCTTATGCCCCAGTTAT
*
11911496 TAAAAGAGGC-TAGGCCTCCAGTTAT
1 TAAAAG-GGCTTATGCC-CCAGTTAT
11911521 ATGATCAAGA
Statistics
Matches: 188, Mismatches: 20, Indels: 13
0.85 0.09 0.06
Matches are distributed among these distances:
23 65 0.35
24 94 0.50
25 29 0.15
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.29
Consensus pattern (24 bp):
TAAAAGGGCTTATGCCCCAGTTAT
Found at i:11911379 original size:47 final size:47
Alignment explanation
Indices: 11911283--11911499 Score: 301
Period size: 47 Copynumber: 4.6 Consensus size: 47
11911273 GAGGAAGTGT
* ** *
11911283 AAAAGGGCTTATGCCCCAGTTATTAAAAAGGTCTTACACCCTAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATT--AAAGGGCTTATGCCCCAGTTATC
11911332 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATC
* *
11911379 AAAAGGGCTTACGCCCCAGTTATTAAAAGGCTTATGCCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATG-CCCCAGTTATC
* * *
11911426 TAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCTAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATC
* *
11911473 AAAAGGGCTTTTGCCCGAGTTATTAAA
1 AAAAGGGCTTATGCCCCAGTTATTAAA
11911500 AGAGGCTAGG
Statistics
Matches: 153, Mismatches: 13, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
46 9 0.06
47 110 0.72
48 10 0.07
49 24 0.16
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29
Consensus pattern (47 bp):
AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATC
Found at i:11911751 original size:31 final size:31
Alignment explanation
Indices: 11911713--11911776 Score: 83
Period size: 31 Copynumber: 2.1 Consensus size: 31
11911703 CCGTTACAGT
*
11911713 AAAGGCTTCGGCCCAGTAATATGAAATTTGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
* * **
11911744 AAAGGCTTTGGTCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
11911775 AA
1 AA
11911777 TATGAAAAGG
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.36, C:0.12, G:0.23, T:0.28
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:11914473 original size:37 final size:36
Alignment explanation
Indices: 11914423--11914509 Score: 147
Period size: 37 Copynumber: 2.3 Consensus size: 36
11914413 TACAAAGTCT
11914423 TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
1 TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
11914459 GTACCCGGACATAATCTCCACACGTAGTCATCGGGTC
1 -TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
11914496 TCACCCGGAACATA
1 T-ACCCGG-ACATA
11914510 TTTCCAAATT
Statistics
Matches: 48, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
36 1 0.02
37 42 0.88
38 5 0.10
ACGTcount: A:0.26, C:0.33, G:0.20, T:0.21
Consensus pattern (36 bp):
TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
Found at i:11931721 original size:28 final size:28
Alignment explanation
Indices: 11931687--11931742 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
11931677 GGGTAAAAAG
11931687 ATAGTAAATTAAAAGAGGTTGGGAGGGT
1 ATAGTAAATTAAAAGAGGTTGGGAGGGT
11931715 ATAGTAAATTAAAAGAGGTTGGGAGGGT
1 ATAGTAAATTAAAAGAGGTTGGGAGGGT
11931743 TTCGGCTAAG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.39, C:0.00, G:0.36, T:0.25
Consensus pattern (28 bp):
ATAGTAAATTAAAAGAGGTTGGGAGGGT
Found at i:11935557 original size:74 final size:75
Alignment explanation
Indices: 11935427--11935567 Score: 185
Period size: 74 Copynumber: 1.9 Consensus size: 75
11935417 AGCTCAGATG
* * *
11935427 AAATCTCCACACAAAGTTATCGGGTCTTACCCGGACAAAATCTCCACACGTAGTCATCGGGT-TT
1 AAATCTCCACACAAAGTCATCGGGTCTTACCCGGACAAAATCACCACACATAGTCATCGGGTCTT
11935491 TACCCGGACA
66 TACCCGGACA
** * * * * *
11935501 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACATAGTCACCACATATGGTCATCTGGTCTT
1 AAATCTCCACACAAAGTCATCGGGTCTTACCCGGACAAAATCACCACACATAGTCATCGGGTCTT
11935566 TA
66 TA
11935568 ATCCCAGGTT
Statistics
Matches: 56, Mismatches: 10, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
74 52 0.93
75 4 0.07
ACGTcount: A:0.28, C:0.29, G:0.18, T:0.26
Consensus pattern (75 bp):
AAATCTCCACACAAAGTCATCGGGTCTTACCCGGACAAAATCACCACACATAGTCATCGGGTCTT
TACCCGGACA
Found at i:11935565 original size:37 final size:37
Alignment explanation
Indices: 11935427--11935537 Score: 186
Period size: 37 Copynumber: 3.0 Consensus size: 37
11935417 AGCTCAGATG
** *
11935427 AAATCTCCACACAAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
11935464 AAATCTCCACACGTAGTCATCGGGTTTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
11935501 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
11935538 TAGTCACCAC
Statistics
Matches: 69, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 69 1.00
ACGTcount: A:0.29, C:0.31, G:0.18, T:0.23
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:11935788 original size:46 final size:46
Alignment explanation
Indices: 11935738--11935856 Score: 175
Period size: 46 Copynumber: 2.6 Consensus size: 46
11935728 ACATATCTCA
* * *
11935738 CATTAGCCATTTGGCTTTACCACATATCCATCGCATACACGTTTCG
1 CATTAGCCATTCGGCTTTACCACATATCCATCGCATAAACATTTCG
* * *
11935784 CATTAGCCATTCGGCTTTACCTCATATCTATCTCATAAACATTTCG
1 CATTAGCCATTCGGCTTTACCACATATCCATCGCATAAACATTTCG
*
11935830 CATTAGCCATTCGGCCTTACCACATAT
1 CATTAGCCATTCGGCTTTACCACATAT
11935857 ATACATGTTC
Statistics
Matches: 65, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 65 1.00
ACGTcount: A:0.25, C:0.30, G:0.11, T:0.34
Consensus pattern (46 bp):
CATTAGCCATTCGGCTTTACCACATATCCATCGCATAAACATTTCG
Found at i:11935891 original size:47 final size:47
Alignment explanation
Indices: 11935830--11936165 Score: 456
Period size: 47 Copynumber: 7.1 Consensus size: 47
11935820 AAACATTTCG
* * * **
11935830 CATTAGCCATTCGGCCTTACCACATATATACATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
11935877 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
*
11935924 CATTGGCCATTCGGCCTTATCACACATACGCGTGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
*
11935971 CATTGGCCATTCGGCCTTATCACACATACGCGTGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
11936018 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
* * ** * *
11936065 CATTGGCCATTCGGCCGTATCACGCATATATATACAGGTTCACATTCGTCA
1 CATTGGCCATTCGGCCTTATCA--C--ACATACGCATGTTCACATTCATCA
* * * ** **
11936116 CATTTGCCATTCGGCCTTATCTCATATATACACATTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
11936163 CAT
1 CAT
11936166 AAAATCCTAA
Statistics
Matches: 266, Mismatches: 19, Indels: 8
0.91 0.06 0.03
Matches are distributed among these distances:
47 226 0.85
49 2 0.01
51 38 0.14
ACGTcount: A:0.26, C:0.31, G:0.12, T:0.31
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
Found at i:11940006 original size:40 final size:40
Alignment explanation
Indices: 11939962--11940452 Score: 732
Period size: 40 Copynumber: 12.3 Consensus size: 40
11939952 CGAGGTTTAA
* *
11939962 CCCGGATATATCACTAGCACGATTACTCTTCGGAACTTAG
1 CCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAG
* * * *
11940002 CCCGGACATATTACCAGCACGAATGCTCTTCGGAAATTAG
1 CCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAG
*
11940042 CCCGGATATATCACTAGCACGAATGCTAC-TCGGGACTTAG
1 CCCGGATATATCACTAGCACGAATGCT-CTTCGGAACTTAG
* * *
11940082 CCCGGACATATTACCAGCACGAATGCTCTTCGGAACTTAG
1 CCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAG
*
11940122 CCCGGATATATCACTAGCACGAATGCTCTTCGGGACTTAG
1 CCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAG
11940162 CCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAG
1 CCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAG
* * ** * *
11940202 CCTGGACATATTTCCAGCACTAATGCTCTTCGGAACTTAG
1 CCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAG
* * *
11940242 CCCGGATATATCACTAGCACGAATGCTCCTCGGGACCTAG
1 CCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAG
* * *
11940282 CCCGGACATATTACCAGCACGAATGCTCTTCGGAACTTAG
1 CCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAG
*
11940322 CCCGGATATATCACTAGCACGAATGCTCTTCGGGACTTAG
1 CCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAG
*
11940362 CCCGGATATATCACTAGCACGAATGCTCTTCGGGACTTAG
1 CCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAG
*
11940402 CCCGGATATATCACTAGCACGAATGCTCTTCGGGACTTAG
1 CCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAG
11940442 CCCGGATATAT
1 CCCGGATATAT
11940453 ATAACTCTCA
Statistics
Matches: 404, Mismatches: 45, Indels: 4
0.89 0.10 0.01
Matches are distributed among these distances:
39 1 0.00
40 402 1.00
41 1 0.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
CCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAG
Found at i:11941843 original size:37 final size:37
Alignment explanation
Indices: 11941722--11941832 Score: 168
Period size: 37 Copynumber: 3.0 Consensus size: 37
11941712 AGCTCAGATG
* * *
11941722 AAATCTCCACACGAAGTTATCAGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
* *
11941759 AAATTTCCACACGTAGTCATCGGGTTTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
11941796 AAATCTCCACACGTAGTCATCGGGTCTTACCTGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
11941833 TAGTCACCAC
Statistics
Matches: 66, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
37 66 1.00
ACGTcount: A:0.29, C:0.29, G:0.18, T:0.24
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:11941852 original size:37 final size:37
Alignment explanation
Indices: 11941722--11941852 Score: 120
Period size: 37 Copynumber: 3.5 Consensus size: 37
11941712 AGCTCAGATG
* * *
11941722 AAATCTCCACACGA-AGTTATCAGGTCTTACCCGGACA
1 AAATCACCACAC-ATAGTCATCGGGTCTTACCCGGACA
** * *
11941759 AAATTTCCACACGTAGTCATCGGGTTTTACCCGGACA
1 AAATCACCACACATAGTCATCGGGTCTTACCCGGACA
* * *
11941796 AAATCTCCACACGTAGTCATCGGGTCTTACCTGGACA
1 AAATCACCACACATAGTCATCGGGTCTTACCCGGACA
* * * *
11941833 TAGTCACCACATATGGTCAT
1 AAATCACCACACATAGTCAT
11941853 TTGGTCTTTA
Statistics
Matches: 79, Mismatches: 14, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
37 79 1.00
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.25
Consensus pattern (37 bp):
AAATCACCACACATAGTCATCGGGTCTTACCCGGACA
Found at i:11942089 original size:46 final size:46
Alignment explanation
Indices: 11942016--11942149 Score: 180
Period size: 46 Copynumber: 2.9 Consensus size: 46
11942006 TATATATACA
* * *
11942016 CATCTCATACATATCTCACATTAGCCATTTGGCTTTACCACATATC
1 CATCTCATACACATTTCACATTAGCCATTCGGCTTTACCACATATC
* *
11942062 CATCGT-ATACACGTTTCACATTAGCCATTCGGCTTTACCTCATATC
1 CATC-TCATACACATTTCACATTAGCCATTCGGCTTTACCACATATC
* * *
11942108 TATCTCATACACATTTCGCATTAGCCATTCGGCCTTACCACA
1 CATCTCATACACATTTCACATTAGCCATTCGGCTTTACCACA
11942150 CATACGCATG
Statistics
Matches: 76, Mismatches: 10, Indels: 4
0.84 0.11 0.04
Matches are distributed among these distances:
45 1 0.01
46 74 0.97
47 1 0.01
ACGTcount: A:0.26, C:0.31, G:0.09, T:0.34
Consensus pattern (46 bp):
CATCTCATACACATTTCACATTAGCCATTCGGCTTTACCACATATC
Found at i:11942186 original size:47 final size:47
Alignment explanation
Indices: 11942126--11942414 Score: 366
Period size: 47 Copynumber: 6.1 Consensus size: 47
11942116 ACACATTTCG
*
11942126 CATTAGCCATTCGGCCTTACCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTACCACACATACGCATGTTCACATTCATCA
* *
11942173 CATTGGCCATTCGGCCTTATCACACATACGCGTGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTACCACACATACGCATGTTCACATTCATCA
* *
11942220 CATTGGCCATTCGGCCTTATCACACATACGCGTGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTACCACACATACGCATGTTCACATTCATCA
*
11942267 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTACCACACATACGCATGTTCACATTCATCA
* * * ** *
11942314 AATTGGCCATTCGGCCTTATCACGCATATATATACAGGTTCACATTCATCA
1 CATTGGCCATTCGGCC-T-T-AC-CACACATACGCATGTTCACATTCATCA
* * * *
11942365 CATTTGCCATTCGGCCTTATCTCATATATACACA--TTCACATTCATCA
1 CATTGGCCATTCGGCCTTA-C-CACACATACGCATGTTCACATTCATCA
11942412 CAT
1 CAT
11942415 AAAATCCTAA
Statistics
Matches: 222, Mismatches: 15, Indels: 10
0.90 0.06 0.04
Matches are distributed among these distances:
47 168 0.76
48 2 0.01
49 14 0.06
50 2 0.01
51 36 0.16
ACGTcount: A:0.26, C:0.31, G:0.12, T:0.31
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTACCACACATACGCATGTTCACATTCATCA
Found at i:11942284 original size:141 final size:143
Alignment explanation
Indices: 11942126--11942385 Score: 409
Period size: 141 Copynumber: 1.8 Consensus size: 143
11942116 ACACATTTCG
*
11942126 CATTAGCCATTCGGCCTTACCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
1 CATTAGCCATTCGGCCTTACCACACATACGCATGTTCACATTCATCAAATTGGCCATTCGGCCTT
*
11942191 ATCA-C-ACATACGC-GTGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCGT
66 ATCACCAACATACACAG-GTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCGT
11942253 GTTCACATTCATCA
130 GTTCACATTCATCA
* *
11942267 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCAAATTGGCCATTCGGCCTT
1 CATTAGCCATTCGGCCTTACCACACATACGCATGTTCACATTCATCAAATTGGCCATTCGGCCTT
* * *
11942332 ATCACGCATATATATACAGGTTCACATTCATCACATTTGCCATTCGGCCTTATC
66 ATCAC-CA-ACATACACAGGTTCACATTCATCACATTGGCCATTCGGCCTTATC
11942386 TCATATATAC
Statistics
Matches: 107, Mismatches: 7, Indels: 6
0.89 0.06 0.05
Matches are distributed among these distances:
141 66 0.62
143 1 0.01
145 39 0.36
146 1 0.01
ACGTcount: A:0.25, C:0.31, G:0.13, T:0.30
Consensus pattern (143 bp):
CATTAGCCATTCGGCCTTACCACACATACGCATGTTCACATTCATCAAATTGGCCATTCGGCCTT
ATCACCAACATACACAGGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCGTG
TTCACATTCATCA
Found at i:11947500 original size:68 final size:64
Alignment explanation
Indices: 11947383--11947635 Score: 224
Period size: 68 Copynumber: 3.9 Consensus size: 64
11947373 ATACAGATGG
* ** * * * *
11947383 TATGTAGCTAGGTCACATGTATGGTGCTGA-GTGCACATCATGTGTACAAGAGAGCTACGAGACA
1 TATGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATGTGGACAAGAGAGCTACGAG--A
11947447 TTA
63 -TA
* *
11947450 TGATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTGGACAAGAGAGCTACGGGATA
1 T-ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTGGACAAGAGAGCTACGAGATA
* * * * * *
11947515 TATGTAGCTAGGTTGCATGCGTGGTTCTAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGA
1 TATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTGGACAAGAGAGCTACGAGA
11947580 TA
63 TA
* * * * *
11947582 AACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGTGTACAAGAGAGC
1 TA-TGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTGGACAAGAGAGC
11947636 CAAAATTATG
Statistics
Matches: 152, Mismatches: 28, Indels: 16
0.78 0.14 0.08
Matches are distributed among these distances:
63 19 0.12
64 25 0.16
65 3 0.02
66 22 0.14
67 32 0.21
68 51 0.34
ACGTcount: A:0.29, C:0.16, G:0.30, T:0.25
Consensus pattern (64 bp):
TATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTGGACAAGAGAGCTACGAGATA
Found at i:11955217 original size:2 final size:2
Alignment explanation
Indices: 11955210--11955235 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
11955200 TATTCATAAC
11955210 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
11955236 AGTAGCTATA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:11971784 original size:56 final size:56
Alignment explanation
Indices: 11971721--11971863 Score: 214
Period size: 56 Copynumber: 2.5 Consensus size: 56
11971711 ATTATCCTAG
*
11971721 ACATGGTCTTACTCACACATATATATCGGAGTCACATATCGATGCCAACGTATTAA
1 ACATGGTCTTACTCACACATATATATCGGAGTCACATATCAATGCCAACGTATTAA
* * * *
11971777 ACGTGGTCTTACTCGCACACATATATCAGAGTCACATATCAATGCCAACGTATTAA
1 ACATGGTCTTACTCACACATATATATCGGAGTCACATATCAATGCCAACGTATTAA
* *
11971833 ACATGGTCTTACTCTCACATCACATATCGGA
1 ACATGGTCTTACTCACACAT-ATATATCGGA
11971864 ATCCTATGTC
Statistics
Matches: 76, Mismatches: 10, Indels: 1
0.87 0.11 0.01
Matches are distributed among these distances:
56 68 0.89
57 8 0.11
ACGTcount: A:0.33, C:0.25, G:0.14, T:0.28
Consensus pattern (56 bp):
ACATGGTCTTACTCACACATATATATCGGAGTCACATATCAATGCCAACGTATTAA
Found at i:11993529 original size:2 final size:2
Alignment explanation
Indices: 11993522--11993556 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
11993512 ACATTGAGAC
11993522 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
11993557 GTCATGATAC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:11996696 original size:3 final size:3
Alignment explanation
Indices: 11996688--11996736 Score: 98
Period size: 3 Copynumber: 16.3 Consensus size: 3
11996678 TTTGTGTGTC
11996688 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
11996736 T
1 T
11996737 CTTTTTAAAT
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 46 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:11996864 original size:17 final size:18
Alignment explanation
Indices: 11996826--11996866 Score: 50
Period size: 17 Copynumber: 2.4 Consensus size: 18
11996816 CAAGCTGTTT
*
11996826 TATTTGTTTTCTTTATCC
1 TATTTGTTTTATTTATCC
*
11996844 -ATTTTTTTTATTTA-CC
1 TATTTGTTTTATTTATCC
11996860 TATTTGT
1 TATTTGT
11996867 CTTCCTCCTA
Statistics
Matches: 19, Mismatches: 3, Indels: 3
0.76 0.12 0.12
Matches are distributed among these distances:
16 2 0.11
17 17 0.89
ACGTcount: A:0.15, C:0.12, G:0.05, T:0.68
Consensus pattern (18 bp):
TATTTGTTTTATTTATCC
Found at i:11997070 original size:26 final size:26
Alignment explanation
Indices: 11996993--11997071 Score: 67
Period size: 26 Copynumber: 3.1 Consensus size: 26
11996983 TTCATATTGT
* *
11996993 TTTATCTTAAATCGTTTTATAT-AGTA
1 TTTATTTTAAATTGTTTTATATCA-TA
* *
11997019 TTTATTTTAAACTG--TTATGTCATA
1 TTTATTTTAAATTGTTTTATATCATA
*
11997043 TTTTTTTTAAATTGTTTTAT-TCATTA
1 TTTATTTTAAATTGTTTTATATCA-TA
11997069 TTT
1 TTT
11997072 GCTCTAAGTT
Statistics
Matches: 43, Mismatches: 6, Indels: 8
0.75 0.11 0.14
Matches are distributed among these distances:
24 19 0.44
25 4 0.09
26 20 0.47
ACGTcount: A:0.27, C:0.06, G:0.06, T:0.61
Consensus pattern (26 bp):
TTTATTTTAAATTGTTTTATATCATA
Found at i:12001916 original size:43 final size:43
Alignment explanation
Indices: 12001863--12002724 Score: 945
Period size: 43 Copynumber: 20.2 Consensus size: 43
12001853 GGCACCAAGG
* * * *
12001863 TGCCAATGGTGCCCGAGGTTCCCGCAAGACCAAAGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * ** *
12001906 TGCCGATGGTGTCCGAGGCTCCCACAC-ATCCAAGCACCAAGG-
1 TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGT
* * *
12001948 TGCCGATGGTGCCCGAAGCTCTCGCACGATCAA-GGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* *
12001990 TGCTGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
*
12002033 TGCCAATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
** * ** ** *
12002076 TTTCGATGGTGTCCGAGGCTCCCATAC-ATCCAAGCACCAAGG-
1 TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGT
* * * * *
12002118 TGCCGATGGT-CTCGTGGCTCTCGTACGACCAAGGGCCAAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * * * *
12002160 TACCAATGGTGCTCGACGCTCCAGCACGACCAAGGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* *
12002203 TGCCTATGGTGTCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * *
12002246 TGTCGATGGTGCCCGAGGCTCCCGCACAACCAAGGGTCTAGG-
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
*
12002288 TGCCGATAGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * * * *
12002331 TGCCGATAGT-ACCGAGGCTCTCGTACGACCAATGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* *
12002373 TGCCGATGGTGCCCGAGGCTCCCGCACGACTAGGGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * *
12002416 TGCTGATGGTGCCTGAGGCTCCCGCACGACCAGGGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
*
12002459 TGCCGATGGTGCCCGAGGCTCCTGCACGACCAAGGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * ** *
12002502 TGTCGATGGTTG-CTGAGGCTCCCGCAC-ATCCAAGCACCAAGG-
1 TGCCGATGG-TGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGT
** * *
12002544 TGCTAATGGTGCCCGAGGCTCCCGTACGAGCAAGGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * *
12002587 TGCCGATGGTGCTCGAGGCTCCCGTATGACCAAGGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * * ** *
12002630 TGTCAATGGTACCTTAGGCTCCCGCACGACCAGGGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* ** * * *
12002673 TGTCGATGGTGGTCGAGGCTCTCGTACGACCAAGAGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
12002716 TGCCGATGG
1 TGCCGATGG
12002725 CGCTGAAGCT
Statistics
Matches: 680, Mismatches: 124, Indels: 30
0.82 0.15 0.04
Matches are distributed among these distances:
41 29 0.04
42 177 0.26
43 472 0.69
44 2 0.00
ACGTcount: A:0.19, C:0.31, G:0.32, T:0.18
Consensus pattern (43 bp):
TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
Found at i:12002171 original size:170 final size:170
Alignment explanation
Indices: 12001863--12002806 Score: 913
Period size: 170 Copynumber: 5.5 Consensus size: 170
12001853 GGCACCAAGG
* * *
12001863 TGCCAATGGTGCCCGAGGTTCCCGCAAGACCAAAGGCCTAGGTTGCCGATGGTGTCCGAGGCTCC
1 TGCCAATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTG-CCGAGGCTCC
* *
12001928 CACACATCCAAGCACCAAGGTGCCGATGGTGCCCGAAGCTCTCGCACGATCAA-GGCCTAGGTTG
65 CACACATCCAAGCACCAAGGTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGGTTG
* *
12001992 CTGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGGT
130 CCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
**
12002033 TGCCAATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTTTCGATGGTGTCCGAGGCTCC
1 TGCCAATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTG-CCGAGGCTCC
* * * * * *
12002098 CATACATCCAAGCACCAAGGTGCCGATGGT-CTCGTGGCTCTCGTACGACCAAGGGCCAAGGTTA
65 CACACATCCAAGCACCAAGGTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGGTTG
* * * *
12002162 CCAATGGTGCTCGACGCTCCAGCACGACCAAGGGCCTAGGT
130 CCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * *
12002203 TGCCTATGGTGTCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGTCGATGGTGCCCGAGGCTCC
1 TGCCAATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTG-CCGAGGCTCC
* * *** * * *
12002268 CGCACAACCAAGGGTCTAGGTGCCGATAGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTG
65 CACACATCCAAGCACCAAGGTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGGTTG
* * * * *
12002333 CCGATAGT-ACCGAGGCTCTCGTACGACCAATGGCCTAGGT
130 CCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * * *
12002373 TGCCGATGGTGCCCGAGGCTCCCGCACGACTAGGGGCCTAGGTTGCTGATGGTGCCTGAGGCTCC
1 TGCCAATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC-GAGGCTCC
* * ** *
12002438 CGCACGA-CCAGGGGCCTAGGTTGCCGATGGTGCCCGAGGCTC-CTGCACGACCAAGGGCCTAGG
65 CACAC-ATCCAAGCACCAAGG-TGCCGATGGTGCCCGAGGCTCTC-GCACGACCAAGGGCCTAGG
* * ** *
12002501 TTGTCGATGGTTG-CTGAGGCTCCCGCAC-ATCCAAGCACCAAGG-
127 TTGCCGATGG-TGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGT
* * *
12002544 TGCTAATGGTGCCCGAGGCTCCCGTACGAGCAAGGGCCTAGGTTGCCGATGGTGCTCGAGGCTCC
1 TGCCAATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGC-CGAGGCTCC
** * ** * * * * ** * *
12002609 CGTATGA-CCAAGGGCCTAGGTTGTCAATGGTACCTTAGGCTCCCGCACGACCAGGGGCCTAGGT
65 CACA-CATCCAAGCACCAAGG-TGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGGT
* ** * * *
12002673 TGTCGATGGTGGTCGAGGCTCTCGTACGACCAAGAGCCTAGGT
128 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * * * * ** * * * * *
12002716 TGCCGATGGCG-CTGAAGCTCTCGCAC-ATCCAAGCACCAAGG-TGCTGATGCTCCCCTAGGCTC
1 TGCCAATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGT-GCCGAGGCTC
* *
12002778 CCGCACATCCAAGCACCAAGATGCCGATG
64 CCACACATCCAAGCACCAAGGTGCCGATG
12002807 CTGCTCGAAC
Statistics
Matches: 646, Mismatches: 110, Indels: 37
0.81 0.14 0.05
Matches are distributed among these distances:
169 26 0.04
170 345 0.53
171 242 0.37
172 33 0.05
ACGTcount: A:0.19, C:0.31, G:0.31, T:0.18
Consensus pattern (170 bp):
TGCCAATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCGAGGCTCCC
ACACATCCAAGCACCAAGGTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGGTTGC
CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
Found at i:12002221 original size:213 final size:213
Alignment explanation
Indices: 12001948--12002764 Score: 1013
Period size: 213 Copynumber: 3.8 Consensus size: 213
12001938 AGCACCAAGG
* * * *
12001948 TGCCGATGGTGCCCGAAGCTCTCGCACGATCAA-GGCCTAGGTTGCTGATGGTGCCCGAGGCTCC
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCTGATGGTGCCTGAGGCTCC
*
12002012 CGCACGACCAGGGGCCTAGGTTGCCAATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTT
66 CGCACGACCAGGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTT
** ** *
12002077 TTCGATGGTGTCCGAGGCTCCCATACATCCAAGCACCAAGGTGCCGATGGT-CTCGTGGCTCTCG
131 GCCGATGGTGTCCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTAC-CGAGGCTCTCG
*
12002141 TACGACCAAGGGCCAAGGT
195 TACGACCAAGGGCCTAGGT
* * * * *
12002160 TACCAATGGTGCTCGACGCTCCAGCACGACCAAGGGCCTAGGTTGCCT-ATGGTGTCC-GAGGCT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTG-CTGATGGTG-CCTGAGGCT
* * * *
12002223 CCCGCACGACCAAGGGCCTAGGTTGTCGATGGTGCCCGAGGCTCCCGCACAACCAAGGGTCTAGG
64 CCCGCACGACCAGGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGG
* * ** * *
12002288 -TGCCGATAGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATAGTACCGAGGCTC
129 TTGCCGATGGTGTCCGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCGATGGTACCGAGGCTC
*
12002351 TCGTACGACCAATGGCCTAGGT
192 TCGTACGACCAAGGGCCTAGGT
* *
12002373 TGCCGATGGTGCCCGAGGCTCCCGCACGACTAGGGGCCTAGGTTGCTGATGGTGCCTGAGGCTCC
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCTGATGGTGCCTGAGGCTCC
*
12002438 CGCACGACCAGGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCTGCACGACCAAGGGCCTAGGTT
66 CGCACGACCAGGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTT
* * ** * *
12002503 GTCGATGGT-TGCTGAGGCTCCCGCACATCCAAGCACCAAGGTGCTAATGGTGCCCGAGGCTCCC
131 GCCGATGGTGT-CCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGT-ACCGAGGCTCTC
*
12002567 GTACGAGCAAGGGCCTAGGT
194 GTACGACCAAGGGCCTAGGT
* * * * * *
12002587 TGCCGATGGTGCTCGAGGCTCCCGTATGACCAAGGGCCTAGGTTG-TCAATGGTACCTTAGGCTC
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCT-GATGGTGCCTGAGGCTC
* ** * * *
12002651 CCGCACGACCAGGGGCCTAGGTTGTCGATGGTGGTCGAGGCTCTCGTACGACCAAGAGCCTAGGT
65 CCGCACGACCAGGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * * * *
12002716 TGCCGATGGCG-CTGAAGCTCTCGCACATCCAAGCACCAAGGTGCTGATG
130 TGCCGATGGTGTCCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATG
12002765 CTCCCCTAGG
Statistics
Matches: 520, Mismatches: 71, Indels: 27
0.84 0.11 0.04
Matches are distributed among these distances:
212 61 0.12
213 274 0.53
214 185 0.36
ACGTcount: A:0.18, C:0.31, G:0.32, T:0.18
Consensus pattern (213 bp):
TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCTGATGGTGCCTGAGGCTCC
CGCACGACCAGGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTT
GCCGATGGTGTCCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTACCGAGGCTCTCGT
ACGACCAAGGGCCTAGGT
Found at i:12002908 original size:42 final size:43
Alignment explanation
Indices: 12002843--12002977 Score: 175
Period size: 42 Copynumber: 3.2 Consensus size: 43
12002833 CGATGGTGTC
* **
12002843 CGAGGCTCCAGCACATCTAAGGCACCAAGGTACCGATGCTGCT
1 CGAGGCTCCCGCACATCCGAGGCACCAAGGTACCGATGCTGCT
* * * *
12002886 CGAGGTTCCC-CACATCCGAGGCACCAAGTTGCCAATGCTGCT
1 CGAGGCTCCCGCACATCCGAGGCACCAAGGTACCGATGCTGCT
*
12002928 CGAGGCTCCCGCACATCCGA-GCACCAAGGTACCGATGCTACT
1 CGAGGCTCCCGCACATCCGAGGCACCAAGGTACCGATGCTGCT
*
12002970 TGAGGCTC
1 CGAGGCTC
12002978 TCACACCACC
Statistics
Matches: 78, Mismatches: 13, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
42 61 0.78
43 17 0.22
ACGTcount: A:0.23, C:0.35, G:0.25, T:0.17
Consensus pattern (43 bp):
CGAGGCTCCCGCACATCCGAGGCACCAAGGTACCGATGCTGCT
Found at i:12003094 original size:43 final size:43
Alignment explanation
Indices: 12003046--12003139 Score: 161
Period size: 43 Copynumber: 2.2 Consensus size: 43
12003036 GCAATGTCCC
* *
12003046 GATGCTCTCGCACCATCTACGTCCTAGGTTACCAAGGGTGCCT
1 GATGCTCCCGCACCATCGACGTCCTAGGTTACCAAGGGTGCCT
*
12003089 GATGCTCCCGCGCCATCGACGTCCTAGGTTACCAAGGGTGCCT
1 GATGCTCCCGCACCATCGACGTCCTAGGTTACCAAGGGTGCCT
12003132 GATGCTCC
1 GATGCTCC
12003140 GGCATGACCA
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
43 48 1.00
ACGTcount: A:0.17, C:0.34, G:0.26, T:0.23
Consensus pattern (43 bp):
GATGCTCCCGCACCATCGACGTCCTAGGTTACCAAGGGTGCCT
Found at i:12003265 original size:24 final size:25
Alignment explanation
Indices: 12003233--12003303 Score: 92
Period size: 24 Copynumber: 2.9 Consensus size: 25
12003223 TTTCAGGATG
*
12003233 GCTCACCAGAGCACCGCCGGGAA-A
1 GCTCGCCAGAGCACCGCCGGGAATA
*
12003257 GCTCGCCAGAGCACCGCC-GGAATG
1 GCTCGCCAGAGCACCGCCGGGAATA
* *
12003281 GATCGCCGGAGCACCGCCGGGAA
1 GCTCGCCAGAGCACCGCCGGGAA
12003304 CCTAACCGGC
Statistics
Matches: 41, Mismatches: 4, Indels: 3
0.85 0.08 0.06
Matches are distributed among these distances:
23 4 0.10
24 33 0.80
25 4 0.10
ACGTcount: A:0.24, C:0.37, G:0.34, T:0.06
Consensus pattern (25 bp):
GCTCGCCAGAGCACCGCCGGGAATA
Found at i:12003772 original size:58 final size:58
Alignment explanation
Indices: 12003708--12003818 Score: 161
Period size: 58 Copynumber: 1.9 Consensus size: 58
12003698 GGACAGGGAC
* *
12003708 GATTCATTCATTGTTGGGTACC-AGACATGCAACGGTATCTGAATTCTACCTTTAGGAT
1 GATTCATTCATTATTGGGTACCGA-ACATGCAACGATATCTGAATTCTACCTTTAGGAT
* * *
12003766 GATTCATTCATTATTGGGTATCGAACATGTAACGATATCTGAATTCTAGCTTT
1 GATTCATTCATTATTGGGTACCGAACATGCAACGATATCTGAATTCTACCTTT
12003819 TGGGATTGGG
Statistics
Matches: 47, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
58 46 0.98
59 1 0.02
ACGTcount: A:0.27, C:0.17, G:0.19, T:0.37
Consensus pattern (58 bp):
GATTCATTCATTATTGGGTACCGAACATGCAACGATATCTGAATTCTACCTTTAGGAT
Found at i:12004596 original size:191 final size:190
Alignment explanation
Indices: 12004187--12004661 Score: 698
Period size: 191 Copynumber: 2.5 Consensus size: 190
12004177 ACTTAGTATT
* * * * *
12004187 TTTAAC-TGAAAATTTTTTCTTTTGGCCCAAAAGAAATTCAAGAAGCCGAATGAA--AT---ATA
1 TTTAACTTAAAAATTTTTTCTGTTGGCCCAAAACAAATACAAGAAG-CGAATGAAGTATGGCATG
* *
12004246 GCAT-G-ATGGCACGGCACAGCAAAAAATTGAACAAGTGCCCGGACCGCCAATAGTTAGGAGCTC
65 GCATGGCATGGCACGGCACAGCAGAAAATTGAACAAGTGCCCGGACCGCCAACAGTTAGGAGCTC
*
12004309 GCAATGCACCACCACGGCCCCCGTTGTGCCATGTTTCCAGAGGGGGCGGCACGGCCAAGTG
130 GCAATGCACCACCACGGCCCCCGTTGTGCCATGTTTCCAGAAGGGGCGGCACGGCCAAGTG
*
12004370 TTTAACTTAGAAATTTTTTCTGTTGGCCCAAAACAAATACAAGAAGTCGAATGAAGTATGGCATG
1 TTTAACTTAAAAATTTTTTCTGTTGGCCCAAAACAAATACAAGAAG-CGAATGAAGTATGGCATG
* * *
12004435 GCATGGCATGGCATGGTACAGCAGAAAATTGAACAAGTGCCCGGACCGCCAACAGTTGGGAGCTC
65 GCATGGCATGGCACGGCACAGCAGAAAATTGAACAAGTGCCCGGACCGCCAACAGTTAGGAGCTC
* *
12004500 GCACCTGCACCACCACGGCCCCCGTTGTGCCATGTTTCCCGAAGGGGCGGCACGGCCAAGTG
130 GCA-ATGCACCACCACGGCCCCCGTTGTGCCATGTTTCCAGAAGGGGCGGCACGGCCAAGTG
*
12004562 TTTAACTTAAAAATTTTTT-TGTTGGCCCAAAACAAATACAAGAAGCTGAATGAAGTATGGCTTG
1 TTTAACTTAAAAATTTTTTCTGTTGGCCCAAAACAAATACAAGAAGC-GAATGAAGTATGGCATG
* *
12004626 GCATGGCATGGCACGGCACGGTAGAAAATTGAACAA
65 GCATGGCATGGCACGGCACAGCAGAAAATTGAACAA
12004662 AAAATTACGA
Statistics
Matches: 261, Mismatches: 21, Indels: 12
0.89 0.07 0.04
Matches are distributed among these distances:
183 6 0.02
184 42 0.16
186 2 0.01
189 6 0.02
190 2 0.01
191 130 0.50
192 73 0.28
ACGTcount: A:0.31, C:0.23, G:0.25, T:0.21
Consensus pattern (190 bp):
TTTAACTTAAAAATTTTTTCTGTTGGCCCAAAACAAATACAAGAAGCGAATGAAGTATGGCATGG
CATGGCATGGCACGGCACAGCAGAAAATTGAACAAGTGCCCGGACCGCCAACAGTTAGGAGCTCG
CAATGCACCACCACGGCCCCCGTTGTGCCATGTTTCCAGAAGGGGCGGCACGGCCAAGTG
Found at i:12011681 original size:43 final size:43
Alignment explanation
Indices: 12011572--12012586 Score: 852
Period size: 43 Copynumber: 23.9 Consensus size: 43
12011562 TCCTACTTCA
* * * * ** *
12011572 TAGGTTGCCTATGGTGTCCGAGGCTCTCGTACATCCAAGCACA
1 TAGGTTGCCGATGGTGCCCGAGGCTCCCGCACATCCAAGGGCC
* * * * * * *
12011615 AAGG-TACCAATGCTGCTCGAGGCTCCCGCACATCCGAGGCACC
1 TAGGTTGCCGATGGTGCCCGAGGCTCCCGCACATCCAAGG-GCC
* * * *
12011658 AAGG-TGCCGATGGTGCCCAAGGCTCCCGCATGA-CCAAGGGCT
1 TAGGTTGCCGATGGTGCCCGAGGCTCCCGCA-CATCCAAGGGCC
* * **
12011700 TAGGTTGCCGATGGTGTCCGAGGCTCCC-CACATCTAAGCACC
1 TAGGTTGCCGATGGTGCCCGAGGCTCCCGCACATCCAAGGGCC
* * * ** *
12011742 AAGG-TGCCGATGGTTCCTGAGGCTCTAGCATGAT-CAA-GGCC
1 TAGGTTGCCGATGGTGCCCGAGGCTCCCGCA-CATCCAAGGGCC
* * * *
12011783 TAGGTTGCCGATAGTGCCCAAGGCTCTCGCACGA-CCAGGGGCC
1 TAGGTTGCCGATGGTGCCCGAGGCTCCCGCAC-ATCCAAGGGCC
* * *
12011826 TAGGTTGCCAATGGTGCCCGAGGCTCCCACACGTCCAAGGGCC
1 TAGGTTGCCGATGGTGCCCGAGGCTCCCGCACATCCAAGGGCC
* **
12011869 TAGGTTGCCGATGGTGTCCGAGGCTCCCGCACATCCAAGCACC
1 TAGGTTGCCGATGGTGCCCGAGGCTCCCGCACATCCAAGGGCC
* * * * *
12011912 AAGG-TACCGATGGT-CCCCAGGCTCTCGTACGAT-CAAGGGCC
1 TAGGTTGCCGATGGTGCCCGAGGCTCCCGCAC-ATCCAAGGGCC
* * * *
12011953 TAGGTTGCCGATGGCGCCCGAGGCTGCCGTACGAT-CAGGGGCC
1 TAGGTTGCCGATGGTGCCCGAGGCTCCCGCAC-ATCCAAGGGCC
* * * * * *
12011996 TAGGTTGTCGACGGTGCCTGAGGCTCCTGCATGA-CCAAAGGCC
1 TAGGTTGCCGATGGTGCCCGAGGCTCCCGCA-CATCCAAGGGCC
* *
12012039 TAGGTTACCGATGGTGCCCGAGGCTCCCGTACGA-CCAAGGGCC
1 TAGGTTGCCGATGGTGCCCGAGGCTCCCGCAC-ATCCAAGGGCC
* *
12012082 TAGG-AGCCGATGGTGCCCGAGGGTCCCGCACGA-CCAAGGGCC
1 TAGGTTGCCGATGGTGCCCGAGGCTCCCGCAC-ATCCAAGGGCC
*
12012124 TAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAGGGGCC
1 TAGGTTGCCGATGGTGCCCGAGGCTCCCGCAC-ATCCAAGGGCC
* *
12012167 TAGGTTACCGATGGTGCCCGAGGCTCCCGCA-AGACC-AGGGCC
1 TAGGTTGCCGATGGTGCCCGAGGCTCCCGCACA-TCCAAGGGCC
* * *
12012209 TAGGTTGCCAATGGTGCCCGAGGTTCCTGCACGA-CCAAGGGCC
1 TAGGTTGCCGATGGTGCCCGAGGCTCCCGCAC-ATCCAAGGGCC
* * **
12012252 TAGGTTACCGATTGTGCCCGAGGCTCCCGCACATCCAAGTACC
1 TAGGTTGCCGATGGTGCCCGAGGCTCCCGCACATCCAAGGGCC
* *
12012295 AAGG-TGCCAATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCC
1 TAGGTTGCCGATGGTGCCCGAGGCTCCCGCAC-ATCCAAGGGCC
* * * *
12012337 TAGG-TGCCGGTAGTGCCTGAGGCTCCCGCACGA-CCCAGGGCC
1 TAGGTTGCCGATGGTGCCCGAGGCTCCCGCAC-ATCCAAGGGCC
* *
12012379 TAGGTTACCGATGGT-CCCGAGGCTCTCGCACGA-CCAAGGGCC
1 TAGGTTGCCGATGGTGCCCGAGGCTCCCGCAC-ATCCAAGGGCC
* *
12012421 TAGGTTGCCGATGGTGCCTGAGGCTCCCGCACGA-CCAGGGGCC
1 TAGGTTGCCGATGGTGCCCGAGGCTCCCGCAC-ATCCAAGGGCC
* * * * *
12012464 TAGGTTGTCAATGGTGCTCGAGGGTCCCGCACAACCAAGGGCC
1 TAGGTTGCCGATGGTGCCCGAGGCTCCCGCACATCCAAGGGCC
* **
12012507 TAGGTTGCCGAT-G-GCACCGAGGCTCTCAG-ACATCCAAGCACC
1 TAGGTTGCCGATGGTGC-CCGAGGCTC-CCGCACATCCAAGGGCC
* *
12012549 AAGG-TGCCGATGGT-CCTCGAGGCTCCCGTACATCCAAG
1 TAGGTTGCCGATGGTGCC-CGAGGCTCCCGCACATCCAAG
12012587 CACCAAGGTG
Statistics
Matches: 788, Mismatches: 150, Indels: 69
0.78 0.15 0.07
Matches are distributed among these distances:
41 58 0.07
42 310 0.39
43 418 0.53
44 2 0.00
ACGTcount: A:0.19, C:0.32, G:0.32, T:0.17
Consensus pattern (43 bp):
TAGGTTGCCGATGGTGCCCGAGGCTCCCGCACATCCAAGGGCC
Found at i:12012138 original size:85 final size:86
Alignment explanation
Indices: 12011632--12012520 Score: 971
Period size: 85 Copynumber: 10.5 Consensus size: 86
12011622 CAATGCTGCT
* * * * *
12011632 CGAGGCTCCCGCAC-ATCCGAGGCACCAAGG-TGCCGATGGTGCCCAAGGCTCCCGCATGACCAA
1 CGAGGCTCCCGCACGA-CCAAGG-GCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAA
* *
12011695 GGGCTTAGGTTGCCGATGGTGTC
64 GGGCCTAGGTTGCCGATGGTGCC
* ** * * * ** * *
12011718 CGAGGCTCCC-CAC-ATCTAAGCACCAAGG-TGCCGATGGTTCCTGAGGCTCTAGCATGATCAA-
1 CGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAG
*
12011779 GGCCTAGGTTGCCGATAGTGCC
65 GGCCTAGGTTGCCGATGGTGCC
* * * * * *
12011801 CAAGGCTCTCGCACGACCAGGGGCCTAGGTTGCCAATGGTGCCCGAGGCTCCCACACGTCCAAGG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGG
*
12011866 GCCTAGGTTGCCGATGGTGTC
66 GCCTAGGTTGCCGATGGTGCC
** * * * * * *
12011887 CGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TACCGATGGT-CCCCAGGCTCTCGTACGATCAAG
1 CGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAG
*
12011949 GGCCTAGGTTGCCGATGGCGCC
65 GGCCTAGGTTGCCGATGGTGCC
* * * * * * * * * *
12011971 CGAGGCTGCCGTACGATCAGGGGCCTAGGTTGTCGACGGTGCCTGAGGCTCCTGCATGACCAAAG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGG
*
12012036 GCCTAGGTTACCGATGGTGCC
66 GCCTAGGTTGCCGATGGTGCC
* * *
12012057 CGAGGCTCCCGTACGACCAAGGGCCTAGG-AGCCGATGGTGCCCGAGGGTCCCGCACGACCAAGG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGG
12012121 GCCTAGGTTGCCGATGGTGCC
66 GCCTAGGTTGCCGATGGTGCC
* * *
12012142 CGAGGCTCCCGCACGACCAGGGGCCTAGGTTACCGATGGTGCCCGAGGCTCCCGCAAGACC-AGG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGG
*
12012206 GCCTAGGTTGCCAATGGTGCC
66 GCCTAGGTTGCCGATGGTGCC
* * * *
12012227 CGAGGTTCCTGCACGACCAAGGGCCTAGGTTACCGATTGTGCCCGAGGCTCCCGCAC-ATCCAAG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAG
** * *
12012291 TACCAAGG-TGCCAATGGTGCC
65 GGCCTAGGTTGCCGATGGTGCC
* * * *
12012312 CGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGGTAGTGCCTGAGGCTCCCGCACGACCCAGG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGG
*
12012376 GCCTAGGTTACCGATGGT-CC
66 GCCTAGGTTGCCGATGGTGCC
* * *
12012396 CGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCTGAGGCTCCCGCACGACCAGGG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGG
* * *
12012461 GCCTAGGTTGTCAATGGTGCT
66 GCCTAGGTTGCCGATGGTGCC
* *
12012482 CGAGGGTCCCGCACAACCAAGGGCCTAGGTTGCCGATGG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGG
12012521 CACCGAGGCT
Statistics
Matches: 671, Mismatches: 117, Indels: 30
0.82 0.14 0.04
Matches are distributed among these distances:
83 27 0.04
84 165 0.25
85 296 0.44
86 183 0.27
ACGTcount: A:0.19, C:0.32, G:0.33, T:0.17
Consensus pattern (86 bp):
CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGG
GCCTAGGTTGCCGATGGTGCC
Found at i:12012570 original size:42 final size:41
Alignment explanation
Indices: 12012512--12012602 Score: 123
Period size: 42 Copynumber: 2.2 Consensus size: 41
12012502 GGGCCTAGGT
12012512 TGCCGATGGCACCGAGGCTCTCAG-ACATCCAAGCACCAAGG
1 TGCCGATGGCACCGAGGCTC-CAGTACATCCAAGCACCAAGG
*
12012553 TGCCGATGGTC-CTCGAGGCTCCCGTACATCCAAGCACCAAGG
1 TGCCGATGG-CAC-CGAGGCTCCAGTACATCCAAGCACCAAGG
*
12012595 TGTCGATG
1 TGCCGATG
12012603 CTGCTCGAAC
Statistics
Matches: 45, Mismatches: 2, Indels: 5
0.87 0.04 0.10
Matches are distributed among these distances:
41 12 0.27
42 33 0.73
ACGTcount: A:0.23, C:0.33, G:0.27, T:0.16
Consensus pattern (41 bp):
TGCCGATGGCACCGAGGCTCCAGTACATCCAAGCACCAAGG
Found at i:12012763 original size:42 final size:43
Alignment explanation
Indices: 12012640--12012774 Score: 182
Period size: 43 Copynumber: 3.2 Consensus size: 43
12012630 GATGGTGTTT
* * *
12012640 GAGGCTCCCGCACATCTGAGGCACCAAGGTACTGATGCTGCTT
1 GAGGCTCCCGCACATCTGAGGCACCAAGGTGCCGATGCTGCTC
* * * *
12012683 GAGGCTCCCGTACATCCGAGGCACCAAGTTGCCAATGCTGCTC
1 GAGGCTCCCGCACATCTGAGGCACCAAGGTGCCGATGCTGCTC
* *
12012726 AAGGCTCCCACACATCTGA-GCACCAAGGTGCCGATGCTGCTC
1 GAGGCTCCCGCACATCTGAGGCACCAAGGTGCCGATGCTGCTC
12012768 GAGGCTC
1 GAGGCTC
12012775 TCATACCATC
Statistics
Matches: 78, Mismatches: 14, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
42 27 0.35
43 51 0.65
ACGTcount: A:0.21, C:0.33, G:0.27, T:0.19
Consensus pattern (43 bp):
GAGGCTCCCGCACATCTGAGGCACCAAGGTGCCGATGCTGCTC
Found at i:12012959 original size:23 final size:25
Alignment explanation
Indices: 12012933--12012978 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
12012923 GCTCTTGTTC
12012933 CAAAA-GGG-GGGACCAGGATGATT
1 CAAAAGGGGAGGGACCAGGATGATT
12012956 CAAAAGGGGAGGGACCAGGATGA
1 CAAAAGGGGAGGGACCAGGATGA
12012979 CTTGTAGCAT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
23 5 0.24
24 3 0.14
25 13 0.62
ACGTcount: A:0.37, C:0.13, G:0.41, T:0.09
Consensus pattern (25 bp):
CAAAAGGGGAGGGACCAGGATGATT
Found at i:12024703 original size:43 final size:42
Alignment explanation
Indices: 12024656--12025688 Score: 682
Period size: 43 Copynumber: 24.3 Consensus size: 42
12024646 CGAAGCACCA
* * * *
12024656 GCACATCCAACGTCCTAGGTTGTCTATGGTGTCCGAGGCTCCC
1 GCACATCCAA-GGCCTAGGTTGCCGATGGTGCCCGAGGCTCCC
* * * *
12024699 GCACATCCAA-GCACAAAGG-TGCCAATGCTGCTCGAGGCTCCC
1 GCACATCCAAGGC-C-TAGGTTGCCGATGGTGCCCGAGGCTCCC
* * *
12024741 GCACATCCGAGGCACCAAGGTAT--CGATGATGCCCGAGGCTCCC
1 GCACATCCAAGG--CCTAGGT-TGCCGATGGTGCCCGAGGCTCCC
* * **
12024784 GCATGA-CCAAGGGACTAGGTTGCCGATGGTGTTCGAGGCTCCC
1 GCA-CATCCAA-GGCCTAGGTTGCCGATGGTGCCCGAGGCTCCC
* * * * *
12024827 GCGCATCCAAGCACCAAGG-TGTCGATGGTGCCCGAGGCTCTC
1 GCACATCCAAG-GCCTAGGTTGCCGATGGTGCCCGAGGCTCCC
* *
12024869 ACACGAT-CAAGGCCTAGGTTACCGATGGTGCCCGAGGCTCCC
1 GCAC-ATCCAAGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCC
* * * *
12024911 ACACGA-CCAGGGGCCTAGGTTGTCGATGGTGCCCGAGGCTCCT
1 GCAC-ATCCA-AGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCC
* **
12024954 GCACGA-CCAAGGGCCTAGGTTGCCGATGGTGTCTAAGGCTCCC
1 GCAC-ATCCAA-GGCCTAGGTTGCCGATGGTGCCCGAGGCTCCC
* *
12024997 GCACATCCAAGCACCAAGG-TGCCGATGGTGCCCGAGGCTCCC
1 GCACATCCAAG-GCCTAGGTTGCCGATGGTGCCCGAGGCTCCC
* **
12025039 GCACGA-CCAAGGGCCTAGG-TGCTGATGGT-CCCGAGGCTCTT
1 GCAC-ATCCAA-GGCCTAGGTTGCCGATGGTGCCCGAGGCTCCC
* * * *
12025080 GCACAACCAAGGGCCTAGGTTACCGATGGTGCCTGAGGCTCTC
1 GCACATCCAA-GGCCTAGGTTGCCGATGGTGCCCGAGGCTCCC
* * * **
12025123 GTACGA-CCAGGGGCCTAGGTTACCGATGGTGCCCGAGGCTCTT
1 GCAC-ATCCA-AGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCC
* * *
12025166 GCACGA-ACAAGGGCCTAGGTTACCGATGGTGCCTGAGGCTCCC
1 GCAC-ATCCAA-GGCCTAGGTTGCCGATGGTGCCCGAGGCTCCC
* *
12025209 GCACGA-CCAGGGGCCTAGGTTACCGATGGTGCCCGAGGCTCCC
1 GCAC-ATCCA-AGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCC
* * * *
12025252 ACAGGAT-CAGGGGCCTAGGTTGTCGATGGTGCCCGAGGCT-CC
1 GCA-CATCCA-AGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCC
* * * *
12025294 -TACATGACCAGGGCCCTAGGTTACCGATGGTGCCCAAGGCTCCC
1 GCACAT--CCAAGG-CCTAGGTTGCCGATGGTGCCCGAGGCTCCC
* * ** * * *
12025338 GCACAACCGAGGGCCTAAATTGCTGATGGTGCCCGAGGTTCTC
1 GCACATCC-AAGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCC
* * * * *
12025381 ACACATCCAAGCACCAAGG-TGCCGATGGTGCCTGAGGCTCCA
1 GCACATCCAAG-GCCTAGGTTGCCGATGGTGCCCGAGGCTCCC
* * *
12025423 GCACAGCCAAGGGCCTAGG-TGCCGATAGTGCCCGAGGCTCTC
1 GCACATCCAA-GGCCTAGGTTGCCGATGGTGCCCGAGGCTCCC
* * * * *
12025465 GCATGA-CAAAGGGTCTAGGTTGCCGATGGTGCCTGAGGCTCTC
1 GCA-CATCCAA-GGCCTAGGTTGCCGATGGTGCCCGAGGCTCCC
* * * *
12025508 GCACGA-CCAGGGGCCTAGATTGTCGATGGTGCTCGAGGCTCCC
1 GCAC-ATCCA-AGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCC
* * *
12025551 ACACGA-CCAAGGGCCTAGGTTGCCGATGGTGCTCAAGGCTCCC
1 GCAC-ATCCAA-GGCCTAGGTTGCCGATGGTGCCCGAGGCTCCC
* * *
12025594 GCACGA-CCAAAGGCCTAGGTTACCGATGGCG-CCGAGGCTCTC
1 GCAC-ATCC-AAGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCC
* * *
12025636 GCACATCCAAGCACCAAGG-TGCCGATGGT-CCCTAAGGCTCCC
1 GCACATCCAAG-GCCTAGGTTGCCGATGGTGCCC-GAGGCTCCC
*
12025678 ACACATCCAAG
1 GCACATCCAAG
12025689 CACCAAGGTG
Statistics
Matches: 798, Mismatches: 142, Indels: 101
0.77 0.14 0.10
Matches are distributed among these distances:
40 3 0.00
41 49 0.06
42 247 0.31
43 481 0.60
44 13 0.02
45 5 0.01
ACGTcount: A:0.20, C:0.32, G:0.31, T:0.17
Consensus pattern (42 bp):
GCACATCCAAGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCC
Found at i:12024777 original size:85 final size:85
Alignment explanation
Indices: 12024688--12025050 Score: 269
Period size: 85 Copynumber: 4.3 Consensus size: 85
12024678 TCTATGGTGT
12024688 CCGAGGCTCCCGCA-CATCCAA-GCACAAAGG-TGCCAATGCTGCTCGAGGCTCCCGCACATCCG
1 CCGAGGCTCCCGCATCA-CCAAGGCAC-AAGGTTGCCAATGCTGCTCGAGGCTCCCGCACATCC-
*
12024750 AGGCACCAAGGTATCGATGATGC
63 AAGCACCAAGGTATCGATGATGC
* * * * * * *
12024773 CCGAGGCTCCCGCATGACCAAGGGACTAGGTTGCCGATGGTGTTCGAGGCTCCCGCGCATCCAAG
1 CCGAGGCTCCCGCATCACCAAGGCACAAGGTTGCCAATGCTGCTCGAGGCTCCCGCACATCCAAG
* *
12024838 CACCAAGGTGTCGATGGTGC
66 CACCAAGGTATCGATGATGC
* * * * * * * * *
12024858 CCGAGGCTCTCACA-CGATCAAGGC-CTAGGTTACCGATGGTGCCCGAGGCTCCCACACGA-CCA
1 CCGAGGCTCCCGCATC-ACCAAGGCACAAGGTTGCCAATGCTGCTCGAGGCTCCCGCAC-ATCCA
* ** * * *
12024920 GGGGCCTAGGTTGTCGATGGTGC
64 AGCACCAAGG-TATCGATGATGC
* * * * *
12024943 CCGAGGCTCCTGCA-CGACCAAGGGC-CTAGGTTGCCGATGGTG-TCTAAGGCTCCCGCACATCC
1 CCGAGGCTCCCGCATC-ACCAA-GGCACAAGGTTGCCAATGCTGCTC-GAGGCTCCCGCACATCC
** *
12025005 AAGCACCAAGGTGCCGATGGTGC
63 AAGCACCAAGGTATCGATGATGC
12025028 CCGAGGCTCCCGCA-CGACCAAGG
1 CCGAGGCTCCCGCATC-ACCAAGG
12025051 GCCTAGGTGC
Statistics
Matches: 231, Mismatches: 38, Indels: 19
0.80 0.13 0.07
Matches are distributed among these distances:
84 39 0.17
85 122 0.53
86 70 0.30
ACGTcount: A:0.21, C:0.33, G:0.30, T:0.16
Consensus pattern (85 bp):
CCGAGGCTCCCGCATCACCAAGGCACAAGGTTGCCAATGCTGCTCGAGGCTCCCGCACATCCAAG
CACCAAGGTATCGATGATGC
Found at i:12024952 original size:170 final size:168
Alignment explanation
Indices: 12024764--12025638 Score: 827
Period size: 170 Copynumber: 5.1 Consensus size: 168
12024754 ACCAAGGTAT
* * *
12024764 CGATGATGCCCGAGGCTCCCGCATGACCAAGGGACTAGGTTGCCGATGGTGTTCGAGGCTCCCGC
1 CGATGGTGCCCGAGGCTCCCGCATGACCAAGGGCCTAGGTTGCCGATGGTG-CCGAGGCTCCCGC
* ** * * *
12024829 GCATCCAAGCACCAAGGTGTCGATGGTGCCCGAGGCTCTCACACGATCAAGGCCTAGGTTACCGA
65 ACA-CCAAGGGCCAAGGTGTCGATGGTGCCCGAGGCTCCCACACGACCAAGGCCTAGGTTGCCGA
* *
12024894 TGGTGCCCGAGGCTCCCACACGACCAGGGGCCTAGGTTGT
129 TGGTGCCCGAGGCTCCCACACGACCAAGGGCCTAGGTTGC
* * **
12024934 CGATGGTGCCCGAGGCTCCTGCACGACCAAGGGCCTAGGTTGCCGATGGTGTCTAAGGCTCCCGC
1 CGATGGTGCCCGAGGCTCCCGCATGACCAAGGGCCTAGGTTGCCGATGGTG-CCGAGGCTCCCGC
** * * *
12024999 ACATCCAAGCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCTG
65 ACA-CCAAGGGCCAAGGTGTCGATGGTGCCCGAGGCTCCCACACGACCAA-GGCCTAGGTTGCCG
*** * *
12025063 ATGGT-CCCGAGGCTCTTGCACAACCAAGGGCCTAGGTTAC
128 ATGGTGCCCGAGGCTCCCACACGACCAAGGGCCTAGGTTGC
* * * * * * **
12025103 CGATGGTGCCTGAGGCTCTCGTACGACCAGGGGCCTAGGTTACCGATGGTGCCCGAGGCTCTTGC
1 CGATGGTGCCCGAGGCTCCCGCATGACCAAGGGCCTAGGTTGCCGATGGTG-CCGAGGCTCCCGC
* * * * * *
12025168 ACGAACAAGGGCCTAGGT-TACCGATGGTGCCTGAGGCTCCCGCACGACCAGGGGCCTAGGTTAC
65 AC-ACCAAGGGCCAAGGTGT--CGATGGTGCCCGAGGCTCCCACACGACCA-AGGCCTAGGTTGC
* * * *
12025232 CGATGGTGCCCGAGGCTCCCACAGGATCAGGGGCCTAGGTTGT
126 CGATGGTGCCCGAGGCTCCCACACGACCAAGGGCCTAGGTTGC
** * *
12025275 CGATGGTGCCCGAGGCTCCTACATGACC-AGGGCCCTAGGTTACCGATGGTGCCCAAGGCTCCCG
1 CGATGGTGCCCGAGGCTCCCGCATGACCAAGGG-CCTAGGTTGCCGATGGTG-CCGAGGCTCCCG
* ** * * * *
12025339 CACAACCGAGGGCCTAAATTG-CTGATGGTGCCCGAGGTTCTCACAC-ATCCAAGCACCAAGG-T
64 CAC-ACCAAGGGCC-AAGGTGTC-GATGGTGCCCGAGGCTCCCACACGA-CCAAG-GCCTAGGTT
*
12025401 GCCGATGGTGCCTGAGGCT-CCAGCAC-AGCCAAGGGCCTAGG-TGC
124 GCCGATGGTGCCCGAGGCTCCCA-CACGA-CCAAGGGCCTAGGTTGC
* * * * *
12025445 CGATAGTGCCCGAGGCTCTCGCATGACAAAGGGTCTAGGTTGCCGATGGTGCCTGAGGCTCTCGC
1 CGATGGTGCCCGAGGCTCCCGCATGACCAAGGGCCTAGGTTGCCGATGGTGCC-GAGGCTCCCGC
* * * *
12025510 ACGACCAGGGGCCTAGATTGTCGATGGTGCTCGAGGCTCCCACACGACCAAGGGCCTAGGTTGCC
65 AC-ACCAAGGGCCAAG-GTGTCGATGGTGCCCGAGGCTCCCACACGACCAA-GGCCTAGGTTGCC
* * * * *
12025575 GATGGTGCTCAAGGCTCCCGCACGACCAAAGGCCTAGGTTAC
127 GATGGTGCCCGAGGCTCCCACACGACCAAGGGCCTAGGTTGC
* *
12025617 CGATGGCG-CCGAGGCTCTCGCA
1 CGATGGTGCCCGAGGCTCCCGCA
12025639 CATCCAAGCA
Statistics
Matches: 574, Mismatches: 106, Indels: 49
0.79 0.15 0.07
Matches are distributed among these distances:
169 97 0.17
170 244 0.43
171 106 0.18
172 125 0.22
173 2 0.00
ACGTcount: A:0.19, C:0.31, G:0.32, T:0.17
Consensus pattern (168 bp):
CGATGGTGCCCGAGGCTCCCGCATGACCAAGGGCCTAGGTTGCCGATGGTGCCGAGGCTCCCGCA
CACCAAGGGCCAAGGTGTCGATGGTGCCCGAGGCTCCCACACGACCAAGGCCTAGGTTGCCGATG
GTGCCCGAGGCTCCCACACGACCAAGGGCCTAGGTTGC
Found at i:12025191 original size:86 final size:86
Alignment explanation
Indices: 12024764--12025677 Score: 874
Period size: 86 Copynumber: 10.7 Consensus size: 86
12024754 ACCAAGGTAT
* * * * **
12024764 CGATGATGCCCGAGGCTCCCGCATGACCAAGGGACTAGGTTGCCGATGGTGTTCGAGGCTCCCGC
1 CGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGC
* ** * *
12024829 GC-ATCCAAGCACCAAGG-TGT
66 ACGA-CCAAGGGCCTAGGTTGC
* * * *
12024849 CGATGGTGCCCGAGGCTCTCACACGATCAA-GGCCTAGGTTACCGATGGTGCCCGAGGCTCCCAC
1 CGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGC
* *
12024913 ACGACCAGGGGCCTAGGTTGT
66 ACGACCAAGGGCCTAGGTTGC
* **
12024934 CGATGGTGCCCGAGGCTC-CTGCACGACCAAGGGCCTAGGTTGCCGATGGTGTCTAAGGCTCCCG
1 CGATGGTGCCCGAGGCTCTC-GCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCG
** *
12024998 CAC-ATCCAAGCACCAAGG-TGC
65 CACGA-CCAAGGGCCTAGGTTGC
* * **
12025019 CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCTGATGGT-CCCGAGGCTCTTGC
1 CGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGC
* *
12025082 ACAACCAAGGGCCTAGGTTAC
66 ACGACCAAGGGCCTAGGTTGC
* * * * **
12025103 CGATGGTGCCTGAGGCTCTCGTACGACCAGGGGCCTAGGTTACCGATGGTGCCCGAGGCTCTTGC
1 CGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGC
* *
12025168 ACGAACAAGGGCCTAGGTTAC
66 ACGACCAAGGGCCTAGGTTGC
* * * * *
12025189 CGATGGTGCCTGAGGCTCCCGCACGACCAGGGGCCTAGGTTACCGATGGTGCCCGAGGCTCCCAC
1 CGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGC
* * * *
12025254 AGGATCAGGGGCCTAGGTTGT
66 ACGACCAAGGGCCTAGGTTGC
* * * *
12025275 CGATGGTGCCCGAGGCTC-CTACATGACC-AGGGCCCTAGGTTACCGATGGTGCCCAAGGCTCCC
1 CGATGGTGCCCGAGGCTCTC-GCACGACCAAGGG-CCTAGGTTGCCGATGGTGCCCGAGGCTCCC
* * **
12025338 GCACAACCGAGGGCCTAAATTGC
64 GCACGACCAAGGGCCTAGGTTGC
* * * ** * * *
12025361 TGATGGTGCCCGAGGTTCTCACAC-ATCCAAGCACCAAGG-TGCCGATGGTGCCTGAGGCTCCAG
1 CGATGGTGCCCGAGGCTCTCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCG
12025424 CAC-AGCCAAGGGCCTAGG-TGC
65 CACGA-CCAAGGGCCTAGGTTGC
* * * * * *
12025445 CGATAGTGCCCGAGGCTCTCGCATGACAAAGGGTCTAGGTTGCCGATGGTGCCTGAGGCTCTCGC
1 CGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGC
* * *
12025510 ACGACCAGGGGCCTAGATTGT
66 ACGACCAAGGGCCTAGGTTGC
* * * * *
12025531 CGATGGTGCTCGAGGCTCCCACACGACCAAGGGCCTAGGTTGCCGATGGTGCTCAAGGCTCCCGC
1 CGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGC
* *
12025596 ACGACCAAAGGCCTAGGTTAC
66 ACGACCAAGGGCCTAGGTTGC
* ** * *
12025617 CGATGGCG-CCGAGGCTCTCGCAC-ATCCAAGCACCAAGG-TGCCGATGGT-CCCTAAGGCTCCC
1 CGATGGTGCCCGAGGCTCTCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCC-GAGGCTCCC
12025678 ACACATCCAA
Statistics
Matches: 686, Mismatches: 121, Indels: 45
0.81 0.14 0.05
Matches are distributed among these distances:
83 23 0.03
84 138 0.20
85 200 0.29
86 322 0.47
87 3 0.00
ACGTcount: A:0.19, C:0.31, G:0.32, T:0.17
Consensus pattern (86 bp):
CGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGC
ACGACCAAGGGCCTAGGTTGC
Found at i:12025263 original size:129 final size:129
Alignment explanation
Indices: 12024764--12025635 Score: 883
Period size: 129 Copynumber: 6.8 Consensus size: 129
12024754 ACCAAGGTAT
* * * * **
12024764 CGATGATGCCCGAGGCTCCCGCATGACCAAGGGACTAGGTTGCCGATGGTGTTCGAGGCTCCCGC
1 CGATGGTGCCCGAGGCTCCCACACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGC
* ** * * *
12024829 GC-ATCCAAGCACCAAGGTGT--CGATGGTGCCCGAGGCTCTCACACGATCA-AGGCCTAGGTTA
66 ACGA-CCAAGGGCCTAGGT-TACCGATGGTGCCCGAGGCTCTCACACGATCAGGGGCCTAGGTTG
12024890 C
129 C
* * *
12024891 CGATGGTGCCCGAGGCTCCCACACGACCAGGGGCCTAGGTTGTCGATGGTGCCCGAGGCTCCTGC
1 CGATGGTGCCCGAGGCTCCCACACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGC
* * ** * * * ** *
12024956 ACGACCAAGGGCCTAGGTTGCCGATGGTGTCTAAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGC
66 ACGACCAAGGGCCTAGGTTACCGATGGTGCCCGAGGCTCTCACACGAT-CAGGGGCCTAGGTTGC
* * **
12025019 CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCTGATGGT-CCCGAGGCTCTTGC
1 CGATGGTGCCCGAGGCTCCCACACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGC
* * ** * *
12025082 ACAACCAAGGGCCTAGGTTACCGATGGTGCCTGAGGCTCTCGTACGACCAGGGGCCTAGGTTAC
66 ACGACCAAGGGCCTAGGTTACCGATGGTGCCCGAGGCTCTCACACGATCAGGGGCCTAGGTTGC
*** * * *
12025146 CGATGGTGCCCGAGGCTCTTGCACGAACAAGGGCCTAGGTTACCGATGGTGCCTGAGGCTCCCGC
1 CGATGGTGCCCGAGGCTCCCACACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGC
* * * *
12025211 ACGACCAGGGGCCTAGGTTACCGATGGTGCCCGAGGCTCCCACAGGATCAGGGGCCTAGGTTGT
66 ACGACCAAGGGCCTAGGTTACCGATGGTGCCCGAGGCTCTCACACGATCAGGGGCCTAGGTTGC
* * * *
12025275 CGATGGTGCCCGAGGCTCCTACATGACC-AGGGCCCTAGGTTACCGATGGTGCCCAAGGCTCCCG
1 CGATGGTGCCCGAGGCTCCCACACGACCAAGGG-CCTAGGTTGCCGATGGTGCCCGAGGCTCCCG
* * ** * * * * ** *
12025339 CACAACCGAGGGCCTAAATTGCTGATGGTGCCCGAGGTTCTCACAC-ATCCAAGCACCAAGG-TG
65 CACGACCAAGGGCCTAGGTTACCGATGGTGCCCGAGGCTCTCACACGAT-CAGGGGCCTAGGTTG
12025402 C
129 C
* * *
12025403 CGATGGTGCCTGAGGCT-CCAGCAC-AGCCAAGGGCCTAGG-TGCCGATAGTGCCCGAGGCTCTC
1 CGATGGTGCCCGAGGCTCCCA-CACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCC
* * * * * * * *
12025465 GCATGACAAAGGGTCTAGGTTGCCGATGGTGCCTGAGGCTCTCGCACGACCAGGGGCCTAGATTG
64 GCACGACCAAGGGCCTAGGTTACCGATGGTGCCCGAGGCTCTCACACGATCAGGGGCCTAGGTTG
*
12025530 T
129 C
* * *
12025531 CGATGGTGCTCGAGGCTCCCACACGACCAAGGGCCTAGGTTGCCGATGGTGCTCAAGGCTCCCGC
1 CGATGGTGCCCGAGGCTCCCACACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGC
* *
12025596 ACGACCAAAGGCCTAGGTTACCGATGGCG-CCGAGGCTCTC
66 ACGACCAAGGGCCTAGGTTACCGATGGTGCCCGAGGCTCTC
12025636 GCACATCCAA
Statistics
Matches: 609, Mismatches: 117, Indels: 37
0.80 0.15 0.05
Matches are distributed among these distances:
126 61 0.10
127 182 0.30
128 147 0.24
129 219 0.36
ACGTcount: A:0.19, C:0.31, G:0.32, T:0.18
Consensus pattern (129 bp):
CGATGGTGCCCGAGGCTCCCACACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGC
ACGACCAAGGGCCTAGGTTACCGATGGTGCCCGAGGCTCTCACACGATCAGGGGCCTAGGTTGC
Found at i:12025790 original size:116 final size:114
Alignment explanation
Indices: 12025599--12025828 Score: 282
Period size: 116 Copynumber: 2.0 Consensus size: 114
12025589 CTCCCGCACG
* *
12025599 ACCAAAGGCCTAGGTTACCGATGGCGCCGAGGCTCTCGCACATCCAAGCACCAAGGTGCCGATGG
1 ACCAAAGGCCTAGGTTACCGATGGCGCCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGC
* *
12025664 TCCCTAAGGCTCCCACACATCCAAGCACCAAGGTGCTGATGCTGCTCGA
66 TCCCTAAGGCTCCCACACATCCAAGCACCAAGGTGCCGATACTGCTCGA
* * * * * * *
12025713 ACCAATGGCCTAGTTTGCCGATGGTGTCTGAGGCTCCCGCACATCCAAAGTACCAAGGTGTCGAT
1 ACCAAAGGCCTAGGTTACCGATGGCG-CCGAGGCTCCCGCACATCC-AAGCACCAAGGTGCCGAT
* * * * *
12025778 GCT-GCTCGAGGCTCTCGCACATCCGAGCACCAAGGTGCCGATACTGCTCGA
64 GCTCCCT-AAGGCTCCCACACATCCAAGCACCAAGGTGCCGATACTGCTCGA
12025829 GGCTCTCACA
Statistics
Matches: 97, Mismatches: 16, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
114 22 0.23
115 19 0.20
116 56 0.58
ACGTcount: A:0.23, C:0.33, G:0.26, T:0.18
Consensus pattern (114 bp):
ACCAAAGGCCTAGGTTACCGATGGCGCCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGC
TCCCTAAGGCTCCCACACATCCAAGCACCAAGGTGCCGATACTGCTCGA
Found at i:12025825 original size:42 final size:43
Alignment explanation
Indices: 12025742--12025835 Score: 136
Period size: 42 Copynumber: 2.2 Consensus size: 43
12025732 GATGGTGTCT
* * * *
12025742 GAGGCTCCCGCACATCCAAAGTACCAAGGTGTCGATGCTGCTC
1 GAGGCTCTCGCACATCCAAAGCACCAAGGTGCCGATACTGCTC
*
12025785 GAGGCTCTCGCACATCC-GAGCACCAAGGTGCCGATACTGCTC
1 GAGGCTCTCGCACATCCAAAGCACCAAGGTGCCGATACTGCTC
12025827 GAGGCTCTC
1 GAGGCTCTC
12025836 ACACCACCGA
Statistics
Matches: 46, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
42 30 0.65
43 16 0.35
ACGTcount: A:0.21, C:0.34, G:0.27, T:0.18
Consensus pattern (43 bp):
GAGGCTCTCGCACATCCAAAGCACCAAGGTGCCGATACTGCTC
Found at i:12033043 original size:29 final size:29
Alignment explanation
Indices: 12033009--12033083 Score: 80
Period size: 29 Copynumber: 2.6 Consensus size: 29
12032999 TACTCGATTT
*
12033009 CGCACACTTAGTGCCATGCGATTTAG-GCC
1 CGCACACTTAGTGCCATGC-ACTTAGAGCC
** * * *
12033038 CGCACACACAGTGCCATGCCCTTCGAGCT
1 CGCACACTTAGTGCCATGCACTTAGAGCC
12033067 CGCACACTTAGTGCCAT
1 CGCACACTTAGTGCCAT
12033084 ATATTTCCAG
Statistics
Matches: 37, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
28 3 0.08
29 34 0.92
ACGTcount: A:0.21, C:0.36, G:0.21, T:0.21
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTAGAGCC
Found at i:12033100 original size:29 final size:29
Alignment explanation
Indices: 12033067--12033140 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
12033057 CCTTCGAGCT
12033067 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
12033096 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
12033125 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
12033141 ATCTCGTCAC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.31, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:12042726 original size:40 final size:40
Alignment explanation
Indices: 12042656--12042873 Score: 307
Period size: 40 Copynumber: 5.5 Consensus size: 40
12042646 AAACCAAGTA
* * *
12042656 CCTTTGGGATTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
12042695 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
12042735 CCTTCAGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
12042775 CCTTTGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * * *
12042815 CCTTTGGGGCTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
12042855 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
12042874 TTATCATCCG
Statistics
Matches: 163, Mismatches: 13, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
39 14 0.09
40 149 0.91
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:12045944 original size:18 final size:17
Alignment explanation
Indices: 12045921--12045954 Score: 59
Period size: 18 Copynumber: 1.9 Consensus size: 17
12045911 TAGCTGTGCC
12045921 GTTTTCTCTTCTGTATTA
1 GTTTTCTCTTCT-TATTA
12045939 GTTTTCTCTTCTTATT
1 GTTTTCTCTTCTTATT
12045955 TTCTTCCCTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 4 0.25
18 12 0.75
ACGTcount: A:0.09, C:0.18, G:0.09, T:0.65
Consensus pattern (17 bp):
GTTTTCTCTTCTTATTA
Found at i:12047102 original size:25 final size:25
Alignment explanation
Indices: 12047073--12047120 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
12047063 TTATAATATG
* * *
12047073 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
12047098 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
12047121 GTTTATACAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:12047204 original size:11 final size:11
Alignment explanation
Indices: 12047168--12047223 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
12047158 CATGGTATGT
12047168 ATGATATGCAC
1 ATGATATGCAC
* *
12047179 ATGACATG--T
1 ATGATATGCAC
12047188 ATGATATGCAC
1 ATGATATGCAC
12047199 ATGATATG-A-
1 ATGATATGCAC
*
12047208 ATGACATGCAC
1 ATGATATGCAC
12047219 ATGAT
1 ATGAT
12047224 GTATTTATGA
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 14 0.40
10 2 0.06
11 19 0.54
ACGTcount: A:0.38, C:0.14, G:0.20, T:0.29
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:12047223 original size:20 final size:20
Alignment explanation
Indices: 12047157--12047223 Score: 98
Period size: 20 Copynumber: 3.4 Consensus size: 20
12047147 ATTTTGATAA
*
12047157 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
*
12047177 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
* *
12047197 ACATGATATGAATGACATGC
1 ACATGATATGTATGATATGC
12047217 ACATGAT
1 ACATGAT
12047224 GTATTTATGA
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 42 1.00
ACGTcount: A:0.36, C:0.13, G:0.21, T:0.30
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:12047299 original size:24 final size:24
Alignment explanation
Indices: 12047272--12047413 Score: 220
Period size: 23 Copynumber: 6.0 Consensus size: 24
12047262 GAGGAAGTGC
12047272 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
12047296 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
12047320 -AAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
12047343 -AAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
12047366 AAAAAGGGCTT-TGCCCCAGTTATT
1 -AAAAGGGCTTATGCCCCAGTTATT
*
12047390 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
12047414 ATGATAAAGC
Statistics
Matches: 112, Mismatches: 1, Indels: 9
0.92 0.01 0.07
Matches are distributed among these distances:
23 52 0.46
24 43 0.38
25 17 0.15
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.28
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Done.