Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr02 99090824
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 99090824
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 317 characters in sequence are not A, C, G, or T
File 49 of 318
Found at i:13724178 original size:17 final size:18
Alignment explanation
Indices: 13724136--13724184 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
13724126 AGTTGAAAAG
13724136 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
13724155 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
13724172 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
13724185 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:13725072 original size:40 final size:40
Alignment explanation
Indices: 13725006--13725172 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
13724996 AAATTGAATG
* * *
13725006 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * **
13725045 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
13725085 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
13725125 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
13725165 ATATCCGG
1 ATATCCGG
13725173 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:13732173 original size:17 final size:18
Alignment explanation
Indices: 13732131--13732179 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
13732121 AGTTGAAAAG
13732131 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
13732150 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
13732167 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
13732180 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:13733067 original size:40 final size:40
Alignment explanation
Indices: 13733001--13733167 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
13732991 AAATTGAATG
* * *
13733001 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * **
13733040 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
13733080 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
13733120 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
13733160 ATATCCGG
1 ATATCCGG
13733168 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:13735225 original size:17 final size:18
Alignment explanation
Indices: 13735183--13735231 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
13735173 AGTTGAAAAG
13735183 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
13735202 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
13735219 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
13735232 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:13736118 original size:40 final size:40
Alignment explanation
Indices: 13736052--13736218 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
13736042 AAATTGAATG
* * *
13736052 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * **
13736091 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
13736131 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
13736171 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
13736211 ATATCCGG
1 ATATCCGG
13736219 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:13743224 original size:17 final size:18
Alignment explanation
Indices: 13743182--13743230 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
13743172 AGTTGAAAAG
13743182 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
13743201 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
13743218 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
13743231 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:13744118 original size:40 final size:39
Alignment explanation
Indices: 13744052--13744217 Score: 158
Period size: 40 Copynumber: 4.2 Consensus size: 39
13744042 AAATTGAATG
* * *
13744052 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGG-TATT
* * **
13744091 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTATT
*
13744130 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-G-TATT
* * **
13744170 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGT-ATT
13744210 ATATCCGG
1 ATATCCGG
13744218 TTATATTCCG
Statistics
Matches: 103, Mismatches: 17, Indels: 13
0.77 0.13 0.10
Matches are distributed among these distances:
38 3 0.03
39 42 0.41
40 56 0.54
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTATT
Found at i:13750692 original size:5 final size:5
Alignment explanation
Indices: 13750682--13750742 Score: 59
Period size: 5 Copynumber: 11.0 Consensus size: 5
13750672 CATTGAGTCC
*
13750682 ATTTT ATTTT ATTTT ATTTT ATTTT AGTTTTT ATTTTT ATATTA ATTTTT
1 ATTTT ATTTT ATTTT ATTTT ATTTT A--TTTT A-TTTT AT-TTT A-TTTT
13750732 ATTTGT ATTTT
1 ATTT-T ATTTT
13750743 CCTAGACTTT
Statistics
Matches: 49, Mismatches: 2, Indels: 10
0.80 0.03 0.16
Matches are distributed among these distances:
5 26 0.53
6 17 0.35
7 6 0.12
ACGTcount: A:0.21, C:0.00, G:0.03, T:0.75
Consensus pattern (5 bp):
ATTTT
Found at i:13750718 original size:6 final size:6
Alignment explanation
Indices: 13750683--13750742 Score: 56
Period size: 6 Copynumber: 10.5 Consensus size: 6
13750673 ATTGAGTCCA
* *
13750683 TTTTA- TTTTA- TTTTA- TTTTA- TTTTAGT TTTTAT TTTTAT ATTAAT
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTA-T TTTTAT TTTTAT TTTTAT
*
13750728 TTTTAT TTGTAT TTT
1 TTTTAT TTTTAT TTT
13750743 CCTAGACTTT
Statistics
Matches: 47, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
5 20 0.43
6 22 0.47
7 5 0.11
ACGTcount: A:0.20, C:0.00, G:0.03, T:0.77
Consensus pattern (6 bp):
TTTTAT
Found at i:13755080 original size:40 final size:40
Alignment explanation
Indices: 13754992--13755170 Score: 223
Period size: 40 Copynumber: 4.5 Consensus size: 40
13754982 CGAATGGTGT
* * * * *
13754992 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTCACTAAAA
* *
13755033 CCGGGTTAAGTCCCGAAGGCATTTTTGCGAGTTACTAAAA
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAAA
* * *
13755073 CCGGGTTAAGTCCCAAAGGCATTCGTGCGAGTCACTAAAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAAA
* *
13755113 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAATCACTATAA
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAAA
* *
13755153 CCGGGCTACGTCCCGAAG
1 CCGGGTTAAGTCCCGAAG
13755171 ACAATCGAGT
Statistics
Matches: 120, Mismatches: 18, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
40 95 0.79
41 25 0.21
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAAA
Found at i:13755185 original size:80 final size:80
Alignment explanation
Indices: 13755026--13755200 Score: 226
Period size: 80 Copynumber: 2.2 Consensus size: 80
13755016 GTGCTAAGTG
* * * *
13755026 ACTAAATCCGGGTTAAGTCCCGAAGGCATTTTTGCGAGTTACTAAAACCGGGTTAAGTCCCAAAG
1 ACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATCACTAAAACCGGGCTAAGTCCCAAAG
* * *
13755091 GCATTCGTGCGAGTC
66 ACAATCGAGCGAGTC
* * *
13755106 ACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATCACTATAACCGGGCTACGTCCCGAAG
1 ACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATCACTAAAACCGGGCTAAGTCCCAAAG
*
13755171 ACAATCGAGTGAGTC
66 ACAATCGAGCGAGTC
* *
13755186 GCTATATCC-GGTTAA
1 ACTAAATCCGGGTTAA
13755201 ATTTCGAAGG
Statistics
Matches: 82, Mismatches: 13, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
79 6 0.07
80 76 0.93
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.24
Consensus pattern (80 bp):
ACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATCACTAAAACCGGGCTAAGTCCCAAAG
ACAATCGAGCGAGTC
Found at i:13763078 original size:41 final size:40
Alignment explanation
Indices: 13763021--13763240 Score: 237
Period size: 40 Copynumber: 5.5 Consensus size: 40
13763011 TCGAATGGTG
* * * *
13763021 TCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTCACTAAA
*
13763062 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAA
* *
13763102 ACCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAA
* *
13763142 TCCGGGTTAAGTCCCGAAGGCATTTGTACGAATCACTATAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTA-AA
* * * * * * * *
13763183 -CCGGGCTACGTCCCGAAGACAATCGAGCGAGTCGCTATA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAA
* *
13763222 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
13763241 TACGTGACTC
Statistics
Matches: 151, Mismatches: 26, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
39 12 0.08
40 110 0.73
41 29 0.19
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAA
Found at i:13763156 original size:80 final size:80
Alignment explanation
Indices: 13763022--13763240 Score: 269
Period size: 80 Copynumber: 2.7 Consensus size: 80
13763012 CGAATGGTGT
* * * *
13763022 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGGGTTAAGTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGC-GAGTCACTAAATCCGGGTTAAGTCCCGAAGGCATTT
* * *
13763087 GTGCGAGTTACTAAAA
65 GTACGAATCACTAAAA
*
13763103 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCACTAAATCCGGGTTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTCACTAAATCCGGGTTAAGTCCCGAAGGCATTTG
*
13763168 TACGAATCACTATAA
66 TACGAATCACTAAAA
* * * * * * * *
13763183 CCGGGCTACGTCCCGAAGACAATCGAGCGAGTCGCTATATCC-GGTTAAATTCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTCACTAAATCCGGGTTAAGTCCCGAAGG
13763241 TACGTGACTC
Statistics
Matches: 120, Mismatches: 18, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
79 14 0.12
80 81 0.68
81 25 0.21
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.23
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTCACTAAATCCGGGTTAAGTCCCGAAGGCATTTG
TACGAATCACTAAAA
Found at i:13769701 original size:26 final size:27
Alignment explanation
Indices: 13769672--13769727 Score: 96
Period size: 26 Copynumber: 2.1 Consensus size: 27
13769662 AAACAGTCAT
*
13769672 TTTACCCTACAGGGGTATTTGGGA-AA
1 TTTACACTACAGGGGTATTTGGGATAA
13769698 TTTACACTACAGGGGTATTTGGGATAA
1 TTTACACTACAGGGGTATTTGGGATAA
13769725 TTT
1 TTT
13769728 TACAATCTGA
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
26 23 0.82
27 5 0.18
ACGTcount: A:0.27, C:0.12, G:0.25, T:0.36
Consensus pattern (27 bp):
TTTACACTACAGGGGTATTTGGGATAA
Found at i:13769750 original size:27 final size:27
Alignment explanation
Indices: 13769710--13769863 Score: 131
Period size: 26 Copynumber: 5.8 Consensus size: 27
13769700 TACACTACAG
*
13769710 GGGTATTTGGGATAATTTTACAATCTGA
1 GGGTATTT-CGATAATTTTACAATCTGA
* *
13769738 GGGTATTTTGATAATTTTACAATCCGA
1 GGGTATTTCGATAATTTTACAATCTGA
* * * *
13769765 -GGTATTTTGGTAATTTTA-AGAACTAA
1 GGGTATTTCGATAATTTTACA-ATCTGA
* *
13769791 GGGTATTTCAAAAATTTTACAAT-TCG-
1 GGGTATTTCGATAATTTTACAATCT-GA
* *
13769817 GGGTATTTCGAT-TTTTTACAAACTG-
1 GGGTATTTCGATAATTTTACAATCTGA
*
13769842 GGGTATCTCGATAATTTTACAA
1 GGGTATTTCGATAATTTTACAA
13769864 ATCGGGGTCT
Statistics
Matches: 102, Mismatches: 18, Indels: 14
0.76 0.13 0.10
Matches are distributed among these distances:
25 21 0.21
26 40 0.39
27 32 0.31
28 9 0.09
ACGTcount: A:0.31, C:0.10, G:0.19, T:0.40
Consensus pattern (27 bp):
GGGTATTTCGATAATTTTACAATCTGA
Found at i:13771401 original size:21 final size:21
Alignment explanation
Indices: 13771375--13771414 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
13771365 CTATTCCACA
13771375 AATTGAACCTTAGACCTCACG
1 AATTGAACCTTAGACCTCACG
13771396 AATTGAACCTTAGACCTCA
1 AATTGAACCTTAGACCTCA
13771415 TTCACACCAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.35, C:0.28, G:0.12, T:0.25
Consensus pattern (21 bp):
AATTGAACCTTAGACCTCACG
Found at i:13780113 original size:28 final size:27
Alignment explanation
Indices: 13780050--13780119 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
13780040 ATAGTGAGTC
13780050 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
13780077 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
13780105 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
13780120 GTACAAATTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:13781961 original size:25 final size:25
Alignment explanation
Indices: 13781923--13781978 Score: 94
Period size: 25 Copynumber: 2.2 Consensus size: 25
13781913 TTATTTATTT
*
13781923 GCTTATGACCTACTAAGCTATGATA
1 GCTTACGACCTACTAAGCTATGATA
*
13781948 GCTTACGACTTACTAAGCTATGATA
1 GCTTACGACCTACTAAGCTATGATA
13781973 GCTTAC
1 GCTTAC
13781979 TATGTGTATA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
25 29 1.00
ACGTcount: A:0.30, C:0.21, G:0.16, T:0.32
Consensus pattern (25 bp):
GCTTACGACCTACTAAGCTATGATA
Found at i:13783538 original size:2 final size:2
Alignment explanation
Indices: 13783531--13783578 Score: 96
Period size: 2 Copynumber: 24.0 Consensus size: 2
13783521 CAAGATATTG
13783531 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
13783573 AT AT AT
1 AT AT AT
13783579 TCATATCATG
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 46 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:13783718 original size:19 final size:21
Alignment explanation
Indices: 13783694--13783743 Score: 70
Period size: 19 Copynumber: 2.5 Consensus size: 21
13783684 GTACATTGTT
13783694 AACAGAAGCTCG-TAAG-C-TG
1 AACAGAAGCT-GTTAAGACTTG
13783713 AACAGAAGCTGTTAAGACTTG
1 AACAGAAGCTGTTAAGACTTG
13783734 AACAGAAGCT
1 AACAGAAGCT
13783744 TACAAGAGCT
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
18 1 0.04
19 14 0.50
20 1 0.04
21 12 0.43
ACGTcount: A:0.40, C:0.18, G:0.24, T:0.18
Consensus pattern (21 bp):
AACAGAAGCTGTTAAGACTTG
Found at i:13783750 original size:21 final size:21
Alignment explanation
Indices: 13783708--13783758 Score: 61
Period size: 21 Copynumber: 2.4 Consensus size: 21
13783698 GAAGCTCGTA
*
13783708 AGCTGAACAGAAGCTGTTAAG
1 AGCTGAACAGAAGCTGTCAAG
13783729 A-CTTGAACAGAAGCT-TACAAG
1 AGC-TGAACAGAAGCTGT-CAAG
13783750 AGCTGAACA
1 AGCTGAACA
13783759 AAAACTCATA
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
20 2 0.08
21 23 0.88
22 1 0.04
ACGTcount: A:0.41, C:0.18, G:0.24, T:0.18
Consensus pattern (21 bp):
AGCTGAACAGAAGCTGTCAAG
Found at i:13783791 original size:21 final size:21
Alignment explanation
Indices: 13783755--13783909 Score: 114
Period size: 21 Copynumber: 7.4 Consensus size: 21
13783745 ACAAGAGCTG
* * * *
13783755 AACAAAAACTCATAAGTGTTC
1 AACAGAAACTCGTAAGAGTTA
* *
13783776 AACAGAAGCTCGTAAGAGCTA
1 AACAGAAACTCGTAAGAGTTA
* *
13783797 AACAGAAACTTGTATGAGTTA
1 AACAGAAACTCGTAAGAGTTA
* *
13783818 AACAGAAACTCATAAGAGTTG
1 AACAGAAACTCGTAAGAGTTA
* * * *
13783839 AACAGAAGCTC-AATAGAGCTG
1 AACAGAAACTCGTA-AGAGTTA
** *
13783860 AATGGAAACTCATAAGAGTTA
1 AACAGAAACTCGTAAGAGTTA
* * *
13783881 AACATAAGCTCGTAAGAGCTA
1 AACAGAAACTCGTAAGAGTTA
13783902 AACAGAAA
1 AACAGAAA
13783910 GTAAAACACG
Statistics
Matches: 101, Mismatches: 31, Indels: 4
0.74 0.23 0.03
Matches are distributed among these distances:
20 1 0.01
21 99 0.98
22 1 0.01
ACGTcount: A:0.46, C:0.15, G:0.19, T:0.19
Consensus pattern (21 bp):
AACAGAAACTCGTAAGAGTTA
Found at i:13783793 original size:42 final size:41
Alignment explanation
Indices: 13783691--13783850 Score: 126
Period size: 42 Copynumber: 3.9 Consensus size: 41
13783681 TGAGTACATT
* * **
13783691 GTTAACAGAAGCTCGT-A-AGCTGAACAGAAGCTGTTAAGA
1 GTTAACAGAAGCTCATAAGAGCTGAACAGAAACTCATAAGA
* * * * *
13783730 CTTGAACAGAAGCTTACAAGAGCTGAACAAAAACTCATAAGT
1 GTT-AACAGAAGCTCATAAGAGCTGAACAGAAACTCATAAGA
* * ** *
13783772 GTTCAACAGAAGCTCGTAAGAGCTAAACAGAAACTTGTATGA
1 GTT-AACAGAAGCTCATAAGAGCTGAACAGAAACTCATAAGA
* * *
13783814 GTTAAACAGAAACTCATAAGAGTTGAACAGAAGCTCA
1 GTT-AACAGAAGCTCATAAGAGCTGAACAGAAACTCA
13783851 ATAGAGCTGA
Statistics
Matches: 90, Mismatches: 28, Indels: 3
0.74 0.23 0.02
Matches are distributed among these distances:
39 2 0.02
40 10 0.11
41 1 0.01
42 77 0.86
ACGTcount: A:0.42, C:0.17, G:0.21, T:0.20
Consensus pattern (41 bp):
GTTAACAGAAGCTCATAAGAGCTGAACAGAAACTCATAAGA
Found at i:13783857 original size:63 final size:63
Alignment explanation
Indices: 13783755--13783908 Score: 157
Period size: 63 Copynumber: 2.4 Consensus size: 63
13783745 ACAAGAGCTG
* * * ** *
13783755 AACAAAAACTCATAAGTGTTCAACAGAAGCTCGTAAGAGCTAAACAGAAACTTGTATGAGTTA
1 AACAAAAACTCATAAGAGTTAAACAGAAGCTCATAAGAGCTAAACAGAAACTCATAAGAGTTA
* * * **
13783818 AACAGAAACTCATAAGAGTTGAACAGAAGCTCA-ATAGAGCTGAATGGAAACTCATAAGAGTTA
1 AACAAAAACTCATAAGAGTTAAACAGAAGCTCATA-AGAGCTAAACAGAAACTCATAAGAGTTA
* * * *
13783881 AACATAAGCTCGTAAGAGCTAAACAGAA
1 AACAAAAACTCATAAGAGTTAAACAGAA
13783909 AGTAAAACAC
Statistics
Matches: 75, Mismatches: 15, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
62 1 0.01
63 74 0.99
ACGTcount: A:0.46, C:0.16, G:0.19, T:0.19
Consensus pattern (63 bp):
AACAAAAACTCATAAGAGTTAAACAGAAGCTCATAAGAGCTAAACAGAAACTCATAAGAGTTA
Found at i:13789965 original size:18 final size:20
Alignment explanation
Indices: 13789918--13789969 Score: 63
Period size: 21 Copynumber: 2.5 Consensus size: 20
13789908 CTAAGATTAA
13789918 ACTTAATTAATTACTTTAATC
1 ACTTAATTAA-TACTTTAATC
13789939 ATGCTTAATTAA-ACTTTAATC
1 A--CTTAATTAATACTTTAATC
13789960 -CTTAATTAAT
1 ACTTAATTAAT
13789970 TAAATCTAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 8
0.78 0.00 0.22
Matches are distributed among these distances:
18 9 0.32
21 10 0.36
23 9 0.32
ACGTcount: A:0.38, C:0.13, G:0.02, T:0.46
Consensus pattern (20 bp):
ACTTAATTAATACTTTAATC
Found at i:13798444 original size:10 final size:10
Alignment explanation
Indices: 13798429--13798487 Score: 84
Period size: 10 Copynumber: 5.9 Consensus size: 10
13798419 AATTTTAGCT
13798429 TTTATCTTTA
1 TTTATCTTTA
*
13798439 TTTATCCTTA
1 TTTATCTTTA
13798449 TTTATCTTTA
1 TTTATCTTTA
*
13798459 ATTATCTTTA
1 TTTATCTTTA
13798469 TTTAT-TTGTA
1 TTTATCTT-TA
13798479 TTTATCTTT
1 TTTATCTTT
13798488 TAGAATTTAA
Statistics
Matches: 43, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
9 2 0.05
10 39 0.91
11 2 0.05
ACGTcount: A:0.20, C:0.10, G:0.02, T:0.68
Consensus pattern (10 bp):
TTTATCTTTA
Found at i:13801536 original size:15 final size:15
Alignment explanation
Indices: 13801516--13801545 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
13801506 GTGCCATCAA
13801516 AAGTGTCCACTTTCG
1 AAGTGTCCACTTTCG
13801531 AAGTGTCCACTTTCG
1 AAGTGTCCACTTTCG
13801546 CTGTCACTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.20, C:0.27, G:0.20, T:0.33
Consensus pattern (15 bp):
AAGTGTCCACTTTCG
Found at i:13802166 original size:16 final size:16
Alignment explanation
Indices: 13802144--13802201 Score: 50
Period size: 16 Copynumber: 3.7 Consensus size: 16
13802134 GAATGTAAAA
13802144 CAAACTCAAAAAAGCT
1 CAAACTCAAAAAAGCT
* *
13802160 TAAACTC-GAAAAGCT
1 CAAACTCAAAAAAGCT
13802175 CAAA-TCCAAAAAAGAC-
1 CAAACT-CAAAAAAG-CT
*
13802191 CAAACCCAAAA
1 CAAACTCAAAA
13802202 TGCTCGAGCT
Statistics
Matches: 33, Mismatches: 5, Indels: 8
0.72 0.11 0.17
Matches are distributed among these distances:
14 1 0.03
15 11 0.33
16 20 0.61
17 1 0.03
ACGTcount: A:0.57, C:0.26, G:0.07, T:0.10
Consensus pattern (16 bp):
CAAACTCAAAAAAGCT
Found at i:13804852 original size:21 final size:21
Alignment explanation
Indices: 13804828--13804868 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
13804818 AAAACTATTT
* *
13804828 TATATTTATATTTATATAAAC
1 TATATTTAAATTTAAATAAAC
13804849 TATATTTAAATTTAAATAAA
1 TATATTTAAATTTAAATAAA
13804869 TAGTGAAGTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (21 bp):
TATATTTAAATTTAAATAAAC
Found at i:13809918 original size:27 final size:27
Alignment explanation
Indices: 13809874--13809926 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 27
13809864 TACCAGGGGT
*
13809874 GGTGCCGCCTATGTCAGAGGCGGCACC
1 GGTGCCGCCTATGGCAGAGGCGGCACC
* * *
13809901 GGTGCTGCCTCTGGCAGAGGTGGCAC
1 GGTGCCGCCTATGGCAGAGGCGGCAC
13809927 TGAAGGTGGA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.13, C:0.30, G:0.40, T:0.17
Consensus pattern (27 bp):
GGTGCCGCCTATGGCAGAGGCGGCACC
Found at i:13810003 original size:14 final size:15
Alignment explanation
Indices: 13809971--13810001 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
13809961 GCGTACCTCC
13809971 TTGGTTTTTCCTGTT
1 TTGGTTTTTCCTGTT
*
13809986 TTGGTTTTTTCTGTT
1 TTGGTTTTTCCTGTT
13810001 T
1 T
13810002 GGGGACCATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.00, C:0.10, G:0.19, T:0.71
Consensus pattern (15 bp):
TTGGTTTTTCCTGTT
Found at i:13810169 original size:25 final size:24
Alignment explanation
Indices: 13810131--13810197 Score: 66
Period size: 25 Copynumber: 2.8 Consensus size: 24
13810121 GGGAAAAAGA
*
13810131 AGAAAGA-AAAAGAAAAAGAGAAGG
1 AGAAAGAGAAGAGAAAAAG-GAAGG
* *
13810155 AGAGAATAG-AGAGAAAGAAGGTAGG
1 AGA-AAGAGAAGAGAAA-AAGGAAGG
13810180 AGAAAGAGAAGAGAAAAA
1 AGAAAGAGAAGAGAAAAA
13810198 ATAATAATAG
Statistics
Matches: 35, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
24 9 0.26
25 23 0.66
26 3 0.09
ACGTcount: A:0.64, C:0.00, G:0.33, T:0.03
Consensus pattern (24 bp):
AGAAAGAGAAGAGAAAAAGGAAGG
Found at i:13810263 original size:21 final size:20
Alignment explanation
Indices: 13810214--13810262 Score: 80
Period size: 20 Copynumber: 2.5 Consensus size: 20
13810204 ATAGAAAAGC
13810214 TGTTTTTTTAACAGCTTTTT
1 TGTTTTTTTAACAGCTTTTT
*
13810234 TGTTTTTTTAATAGCTTTTT
1 TGTTTTTTTAACAGCTTTTT
*
13810254 TATTTTTTT
1 TGTTTTTTT
13810263 TTAATTTTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.14, C:0.06, G:0.08, T:0.71
Consensus pattern (20 bp):
TGTTTTTTTAACAGCTTTTT
Found at i:13818834 original size:191 final size:191
Alignment explanation
Indices: 13818510--13818896 Score: 738
Period size: 191 Copynumber: 2.0 Consensus size: 191
13818500 TTGCTTACAC
* *
13818510 CATTTCCTTTATCTGAAACTAGACTTGATAAGCTTTCATTTAATATTTTACTCAGCCTCTATTCC
1 CATTTCCTTTATCTGAAACTAGACTTGATAAGCTTTCATTTAATATTTTACTCAGCCTCTACTCA
13818575 ATTTCCACTATTTTAGGTGGGTTTTCACAGTCGGATCTCTGGTATTGTACTAATCTGTCTTTGTG
66 ATTTCCACTATTTTAGGTGGGTTTTCACAGTCGGATCTCTGGTATTGTACTAATCTGTCTTTGTG
13818640 CAACAGGATGATAACCATCACAAATTTGTCATAGAAATTATTCTCATAAATATCACTCATT
131 CAACAGGATGATAACCATCACAAATTTGTCATAGAAATTATTCTCATAAATATCACTCATT
*
13818701 CATTTCCTTTATCTGAAACTAGACTTGATAAGCTTTCATTTAATATTTTACTCAGCCTTTACTCA
1 CATTTCCTTTATCTGAAACTAGACTTGATAAGCTTTCATTTAATATTTTACTCAGCCTCTACTCA
*
13818766 ATTTCCACTATTTTTGGTGGGTTTTCACAGTCGGATCTCTGGTATTGTACTAATCTGTCTTTGTG
66 ATTTCCACTATTTTAGGTGGGTTTTCACAGTCGGATCTCTGGTATTGTACTAATCTGTCTTTGTG
13818831 CAACAGGATGATAACCATCACAAATTTGTCATAGAAATTATTCTCATAAATATCACTCATT
131 CAACAGGATGATAACCATCACAAATTTGTCATAGAAATTATTCTCATAAATATCACTCATT
13818892 CATTT
1 CATTT
13818897 GCACTCTTAT
Statistics
Matches: 192, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
191 192 1.00
ACGTcount: A:0.28, C:0.20, G:0.12, T:0.40
Consensus pattern (191 bp):
CATTTCCTTTATCTGAAACTAGACTTGATAAGCTTTCATTTAATATTTTACTCAGCCTCTACTCA
ATTTCCACTATTTTAGGTGGGTTTTCACAGTCGGATCTCTGGTATTGTACTAATCTGTCTTTGTG
CAACAGGATGATAACCATCACAAATTTGTCATAGAAATTATTCTCATAAATATCACTCATT
Found at i:13823695 original size:26 final size:26
Alignment explanation
Indices: 13823658--13823741 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
13823648 TGATACAAAT
* *
13823658 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
13823684 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
13823710 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
13823736 TGATAA
1 TGATAA
13823742 GAATTTTATG
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.33, C:0.05, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:13825221 original size:27 final size:25
Alignment explanation
Indices: 13825180--13825249 Score: 68
Period size: 26 Copynumber: 2.7 Consensus size: 25
13825170 AAAAGTAGCT
* *
13825180 AAATTACTATAATACCCTATGTATGGA
1 AAATTACTGTTATACCCTA-G-ATGGA
* *
13825207 AAATTACTGTTATACCCCTAGGTGTA
1 AAATTACTGTTATA-CCCTAGATGGA
*
13825233 AAATTACCGTTATACCC
1 AAATTACTGTTATACCC
13825250 CTAGGGTTAA
Statistics
Matches: 37, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
25 3 0.08
26 16 0.43
27 13 0.35
28 5 0.14
ACGTcount: A:0.36, C:0.20, G:0.11, T:0.33
Consensus pattern (25 bp):
AAATTACTGTTATACCCTAGATGGA
Found at i:13825397 original size:27 final size:27
Alignment explanation
Indices: 13825360--13825481 Score: 165
Period size: 27 Copynumber: 4.5 Consensus size: 27
13825350 GAAGCGTTCT
*
13825360 GTGGCTATGCCACAAATATCTGATCTG
1 GTGGCTCTGCCACAAATATCTGATCTG
13825387 GTGGCTCTGCCACAAATATCTGATCTG
1 GTGGCTCTGCCACAAATATCTGATCTG
* *
13825414 GTGGCTCTGCCACATATATCTGTTCTG
1 GTGGCTCTGCCACAAATATCTGATCTG
* *
13825441 GTGGC-CTGCCACGATTATCTGTATCTG
1 GTGGCTCTGCCACAAATATCTG-ATCTG
* *
13825468 GTGACTCTGTCACA
1 GTGGCTCTGCCACA
13825482 TTATCTATTC
Statistics
Matches: 83, Mismatches: 10, Indels: 3
0.86 0.10 0.03
Matches are distributed among these distances:
26 13 0.16
27 64 0.77
28 6 0.07
ACGTcount: A:0.20, C:0.25, G:0.23, T:0.32
Consensus pattern (27 bp):
GTGGCTCTGCCACAAATATCTGATCTG
Found at i:13825487 original size:53 final size:54
Alignment explanation
Indices: 13825367--13825494 Score: 170
Period size: 54 Copynumber: 2.4 Consensus size: 54
13825357 TCTGTGGCTA
* * *
13825367 TGCCACAAATATCTGATCTGGTGGCTCTGCCACAAATATCTGATCTGGTGGCTC
1 TGCCACATATATCTGTTCTGGTGGCTCTGCCACAAATATCTGATCTGGTGACTC
* *
13825421 TGCCACATATATCTGTTCTGGTGGC-CTGCCACGATTATCTGTATCTGGTGACTC
1 TGCCACATATATCTGTTCTGGTGGCTCTGCCACAAATATCTG-ATCTGGTGACTC
* *
13825475 TGTCACAT-TATCTATTCTGG
1 TGCCACATATATCTGTTCTGG
13825495 CAGCCATGCT
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
53 25 0.38
54 41 0.62
ACGTcount: A:0.20, C:0.25, G:0.21, T:0.34
Consensus pattern (54 bp):
TGCCACATATATCTGTTCTGGTGGCTCTGCCACAAATATCTGATCTGGTGACTC
Found at i:13829412 original size:26 final size:26
Alignment explanation
Indices: 13829375--13829432 Score: 98
Period size: 26 Copynumber: 2.2 Consensus size: 26
13829365 TGATACAAAT
13829375 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
13829401 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
13829427 TGATAA
1 TGATAA
13829433 GAATTTTATG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.34, C:0.05, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:13830904 original size:28 final size:26
Alignment explanation
Indices: 13830862--13830932 Score: 79
Period size: 26 Copynumber: 2.7 Consensus size: 26
13830852 AAAAGTAGCT
* *
13830862 AAATTACTATAATACCCCTATGTATGGA
1 AAATTACTGTTATACCCCTA-G-ATGGA
* *
13830890 AAATTACTGTTATACCCCTAGGTGTA
1 AAATTACTGTTATACCCCTAGATGGA
*
13830916 AAATTACCGTTATACCC
1 AAATTACTGTTATACCC
13830933 TAGGGTTAAT
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
26 19 0.50
27 1 0.03
28 18 0.47
ACGTcount: A:0.35, C:0.21, G:0.11, T:0.32
Consensus pattern (26 bp):
AAATTACTGTTATACCCCTAGATGGA
Found at i:13831089 original size:27 final size:26
Alignment explanation
Indices: 13831039--13831148 Score: 91
Period size: 26 Copynumber: 4.2 Consensus size: 26
13831029 GAGGAAGCGT
* *
13831039 TCTGGTGGCTATG-CACAAATATCTGA
1 TCTGGTGGCTCTGCCAC-ATTATCTGA
*
13831065 TCTGGTGGCTTTGCCACATATATCTG-
1 TCTGGTGGCTCTGCCACAT-TATCTGA
* *
13831091 TTTGGTGGC-CTGCTACGATTATCTGTA
1 TCTGGTGGCTCTGCCAC-ATTATCTG-A
* * *
13831118 TCTGGTGACTCTGTCACATTATCTGT
1 TCTGGTGGCTCTGCCACATTATCTGA
13831144 TCTGG
1 TCTGG
13831149 CAGCCATGCT
Statistics
Matches: 68, Mismatches: 10, Indels: 12
0.76 0.11 0.13
Matches are distributed among these distances:
25 11 0.16
26 28 0.41
27 24 0.35
28 5 0.07
ACGTcount: A:0.17, C:0.21, G:0.24, T:0.38
Consensus pattern (26 bp):
TCTGGTGGCTCTGCCACATTATCTGA
Found at i:13838758 original size:42 final size:41
Alignment explanation
Indices: 13838692--13838771 Score: 99
Period size: 42 Copynumber: 1.9 Consensus size: 41
13838682 CACTAAAATC
* *
13838692 ACACGGGCCATCACACGGGCGTGTG-TCAGGTCGTGTGAGGG
1 ACACGGGCCATCACACGGACGTGTGCTCAGCT-GTGTGAGGG
* *
13838733 ACACGGGCCATGGACACGGATGTGTGCTCAGCTGTGTGA
1 ACACGGGCCAT-CACACGGACGTGTGCTCAGCTGTGTGA
13838772 AAACTCTTGT
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
41 11 0.33
42 17 0.52
43 5 0.15
ACGTcount: A:0.19, C:0.24, G:0.39, T:0.19
Consensus pattern (41 bp):
ACACGGGCCATCACACGGACGTGTGCTCAGCTGTGTGAGGG
Found at i:13847269 original size:16 final size:16
Alignment explanation
Indices: 13847248--13847297 Score: 54
Period size: 16 Copynumber: 3.4 Consensus size: 16
13847238 AAGGTTTTAC
13847248 TATTTTTATTCTCTAT
1 TATTTTTATTCTCTAT
* *
13847264 TA---TT-TTCTTTAC
1 TATTTTTATTCTCTAT
13847276 TATTTTTATTCTCTAT
1 TATTTTTATTCTCTAT
13847292 TATTTT
1 TATTTT
13847298 CTTTCTTTCT
Statistics
Matches: 26, Mismatches: 4, Indels: 8
0.68 0.11 0.21
Matches are distributed among these distances:
12 8 0.31
13 2 0.08
15 2 0.08
16 14 0.54
ACGTcount: A:0.18, C:0.12, G:0.00, T:0.70
Consensus pattern (16 bp):
TATTTTTATTCTCTAT
Found at i:13847303 original size:16 final size:16
Alignment explanation
Indices: 13847256--13847303 Score: 50
Period size: 13 Copynumber: 3.2 Consensus size: 16
13847246 ACTATTTTTA
13847256 TTCTCTATTATTTTCT
1 TTCTCTATTATTTTCT
* *
13847272 TT-ACTA-T-TTTT-A
1 TTCTCTATTATTTTCT
13847284 TTCTCTATTATTTTCT
1 TTCTCTATTATTTTCT
13847300 TTCT
1 TTCT
13847304 TTCTTTTATT
Statistics
Matches: 24, Mismatches: 4, Indels: 8
0.67 0.11 0.22
Matches are distributed among these distances:
12 2 0.08
13 7 0.29
14 2 0.08
15 7 0.29
16 6 0.25
ACGTcount: A:0.15, C:0.17, G:0.00, T:0.69
Consensus pattern (16 bp):
TTCTCTATTATTTTCT
Found at i:13847313 original size:28 final size:28
Alignment explanation
Indices: 13847243--13847301 Score: 118
Period size: 28 Copynumber: 2.1 Consensus size: 28
13847233 ATTCAAAGGT
13847243 TTTACTATTTTTATTCTCTATTATTTTC
1 TTTACTATTTTTATTCTCTATTATTTTC
13847271 TTTACTATTTTTATTCTCTATTATTTTC
1 TTTACTATTTTTATTCTCTATTATTTTC
13847299 TTT
1 TTT
13847302 CTTTCTTTTA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.17, C:0.14, G:0.00, T:0.69
Consensus pattern (28 bp):
TTTACTATTTTTATTCTCTATTATTTTC
Found at i:13852382 original size:15 final size:15
Alignment explanation
Indices: 13852349--13852399 Score: 54
Period size: 15 Copynumber: 3.5 Consensus size: 15
13852339 CGATATTCTT
13852349 TTTGCA-TTCATGCA
1 TTTGCATTTCATGCA
13852363 TTTGCATTTCATAGCA
1 TTTGCATTTCAT-GCA
**
13852379 -TTGCATCACAT-CA
1 TTTGCATTTCATGCA
13852392 TTTGCATT
1 TTTGCATT
13852400 CAAAGTTATA
Statistics
Matches: 31, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
13 2 0.06
14 12 0.39
15 14 0.45
16 3 0.10
ACGTcount: A:0.24, C:0.22, G:0.12, T:0.43
Consensus pattern (15 bp):
TTTGCATTTCATGCA
Found at i:13855257 original size:79 final size:79
Alignment explanation
Indices: 13855126--13855346 Score: 322
Period size: 79 Copynumber: 2.8 Consensus size: 79
13855116 AATAGTGACA
* *
13855126 AATTCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATTCCGGGCTAAGTCCCGAAGGC
1 AATTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-TCCGGGCTAAGTCCCGAAGGC
**
13855190 ATTTGTGCGAGTTAC
65 ATTTGTGCGAACTAC
13855205 AATTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCA
1 AATTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCA
13855270 TTTGTGCGAACTAC
66 TTTGTGCGAACTAC
* * * *
13855284 TATATCCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATATCC-GGTTAAATCCCGAAGG
1 AAT-TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCCGGGCTAAGTCCCGAAGG
13855347 TACTTGGTTT
Statistics
Matches: 131, Mismatches: 8, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
79 91 0.69
80 40 0.31
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.25
Consensus pattern (79 bp):
AATTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCA
TTTGTGCGAACTAC
Found at i:13855327 original size:40 final size:39
Alignment explanation
Indices: 13855129--13855346 Score: 307
Period size: 40 Copynumber: 5.5 Consensus size: 39
13855119 AGTGACAAAT
*
13855129 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-A
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT-ACTATA
*
13855168 TTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACAAT-
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATA
13855208 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATA
*
13855248 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAACTACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCG-AGTACTATA
*
13855288 TCCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTAGCTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTA-CTATA
* *
13855328 TCC-GGTTAAATCCCGAAGG
1 TCCGGGCTAAGTCCCGAAGG
13855347 TACTTGGTTT
Statistics
Matches: 165, Mismatches: 8, Indels: 11
0.90 0.04 0.06
Matches are distributed among these distances:
39 55 0.33
40 108 0.65
41 2 0.01
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (39 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTACTATA
Found at i:13855342 original size:119 final size:119
Alignment explanation
Indices: 13855129--13855346 Score: 318
Period size: 119 Copynumber: 1.8 Consensus size: 119
13855119 AGTGACAAAT
* *
13855129 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCAACTGACTAATTCCGGGCTAAGTCCCGAAGGCATTT
* *
13855194 GTGCGAGTTACAATTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
66 GAGCGAGTTACAATTCCGGGCTAAATCCCGAAGGCATTTGTGCGAGTTACTATA
13855248 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAACT-ACT-ATATCCGGGCTAAGTCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-AACTGACTAAT-TCCGGGCTAAGTCCCGAAGGCAT
* *
13855311 TTGAGCGAG-TAGCTATATCC-GGTTAAATCCCGAAGG
64 TTGAGCGAGTTA-CAAT-TCCGGGCTAAATCCCGAAGG
13855347 TACTTGGTTT
Statistics
Matches: 89, Mismatches: 6, Indels: 8
0.86 0.06 0.08
Matches are distributed among these distances:
118 4 0.04
119 80 0.90
120 5 0.06
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (119 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCAACTGACTAATTCCGGGCTAAGTCCCGAAGGCATTT
GAGCGAGTTACAATTCCGGGCTAAATCCCGAAGGCATTTGTGCGAGTTACTATA
Found at i:13859565 original size:15 final size:15
Alignment explanation
Indices: 13859532--13859582 Score: 54
Period size: 15 Copynumber: 3.5 Consensus size: 15
13859522 CGATATTCTT
13859532 TTTGCA-TTCATGCA
1 TTTGCATTTCATGCA
13859546 TTTGCATTTCATAGCA
1 TTTGCATTTCAT-GCA
**
13859562 -TTGCATCACAT-CA
1 TTTGCATTTCATGCA
13859575 TTTGCATT
1 TTTGCATT
13859583 CAAAGTTATA
Statistics
Matches: 31, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
13 2 0.06
14 12 0.39
15 14 0.45
16 3 0.10
ACGTcount: A:0.24, C:0.22, G:0.12, T:0.43
Consensus pattern (15 bp):
TTTGCATTTCATGCA
Found at i:13862439 original size:79 final size:79
Alignment explanation
Indices: 13862308--13862528 Score: 322
Period size: 79 Copynumber: 2.8 Consensus size: 79
13862298 AATAGTGACA
* *
13862308 AATTCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATTCCGGGCTAAGTCCCGAAGGC
1 AATTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-TCCGGGCTAAGTCCCGAAGGC
**
13862372 ATTTGTGCGAGTTAC
65 ATTTGTGCGAACTAC
13862387 AATTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCA
1 AATTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCA
13862452 TTTGTGCGAACTAC
66 TTTGTGCGAACTAC
* * * *
13862466 TATATCCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATATCC-GGTTAAATCCCGAAGG
1 AAT-TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCCGGGCTAAGTCCCGAAGG
13862529 TACTTGGTTT
Statistics
Matches: 131, Mismatches: 8, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
79 91 0.69
80 40 0.31
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.25
Consensus pattern (79 bp):
AATTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCA
TTTGTGCGAACTAC
Found at i:13862509 original size:40 final size:39
Alignment explanation
Indices: 13862311--13862528 Score: 307
Period size: 40 Copynumber: 5.5 Consensus size: 39
13862301 AGTGACAAAT
*
13862311 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-A
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT-ACTATA
*
13862350 TTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACAAT-
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATA
13862390 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATA
*
13862430 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAACTACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCG-AGTACTATA
*
13862470 TCCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTAGCTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTA-CTATA
* *
13862510 TCC-GGTTAAATCCCGAAGG
1 TCCGGGCTAAGTCCCGAAGG
13862529 TACTTGGTTT
Statistics
Matches: 165, Mismatches: 8, Indels: 11
0.90 0.04 0.06
Matches are distributed among these distances:
39 55 0.33
40 108 0.65
41 2 0.01
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (39 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTACTATA
Found at i:13862524 original size:119 final size:119
Alignment explanation
Indices: 13862311--13862528 Score: 318
Period size: 119 Copynumber: 1.8 Consensus size: 119
13862301 AGTGACAAAT
* *
13862311 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCAACTGACTAATTCCGGGCTAAGTCCCGAAGGCATTT
* *
13862376 GTGCGAGTTACAATTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
66 GAGCGAGTTACAATTCCGGGCTAAATCCCGAAGGCATTTGTGCGAGTTACTATA
13862430 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAACT-ACT-ATATCCGGGCTAAGTCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-AACTGACTAAT-TCCGGGCTAAGTCCCGAAGGCAT
* *
13862493 TTGAGCGAG-TAGCTATATCC-GGTTAAATCCCGAAGG
64 TTGAGCGAGTTA-CAAT-TCCGGGCTAAATCCCGAAGG
13862529 TACTTGGTTT
Statistics
Matches: 89, Mismatches: 6, Indels: 8
0.86 0.06 0.08
Matches are distributed among these distances:
118 4 0.04
119 80 0.90
120 5 0.06
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (119 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCAACTGACTAATTCCGGGCTAAGTCCCGAAGGCATTT
GAGCGAGTTACAATTCCGGGCTAAATCCCGAAGGCATTTGTGCGAGTTACTATA
Found at i:13869657 original size:40 final size:39
Alignment explanation
Indices: 13869458--13869676 Score: 282
Period size: 40 Copynumber: 5.5 Consensus size: 39
13869448 AGTGACAAAT
* *
13869458 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGAATA-A
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT-ACTATA
* *
13869497 TTTCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTAC-AAA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATA
13869537 TTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATA
*
13869578 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAACTACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCG-AGTACTATA
*
13869618 TCCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTAGCTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTA-CTATA
* *
13869658 TCC-GGTTAAATCCCGAAGG
1 TCCGGGCTAAGTCCCGAAGG
13869677 TACTTGGTTT
Statistics
Matches: 164, Mismatches: 10, Indels: 11
0.89 0.05 0.06
Matches are distributed among these distances:
39 18 0.11
40 142 0.87
41 4 0.02
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (39 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTACTATA
Found at i:13872165 original size:92 final size:92
Alignment explanation
Indices: 13872005--13872190 Score: 354
Period size: 92 Copynumber: 2.0 Consensus size: 92
13871995 GGGGTATCAG
13872005 AGTGGAGCCCACAAAAACAAAAGATATTGATGTTGAGAAAAGGAAAAAGACTGAAATACCCATCA
1 AGTGGAGCCCACAAAAACAAAAGATATTGATGTTGAGAAAAGGAAAAAGACTGAAATACCCATCA
13872070 ATGAACCGATAAGAGAGGAAGAGGCTA
66 ATGAACCGATAAGAGAGGAAGAGGCTA
*
13872097 AGTGGAGCCCACAAAAACAAAAGATATTGATGTTGAGAAAAGGAAAAAGACTGAAATACCCATTA
1 AGTGGAGCCCACAAAAACAAAAGATATTGATGTTGAGAAAAGGAAAAAGACTGAAATACCCATCA
*
13872162 ATGAACCGGTAAGAGAGGAAGAGGCTA
66 ATGAACCGATAAGAGAGGAAGAGGCTA
13872189 AG
1 AG
13872191 GAATTTCTGA
Statistics
Matches: 92, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
92 92 1.00
ACGTcount: A:0.47, C:0.13, G:0.25, T:0.15
Consensus pattern (92 bp):
AGTGGAGCCCACAAAAACAAAAGATATTGATGTTGAGAAAAGGAAAAAGACTGAAATACCCATCA
ATGAACCGATAAGAGAGGAAGAGGCTA
Found at i:13877117 original size:12 final size:12
Alignment explanation
Indices: 13877089--13877151 Score: 53
Period size: 12 Copynumber: 5.4 Consensus size: 12
13877079 GAGATGTTTC
13877089 AAAAAAA-AAAG
1 AAAAAAATAAAG
* *
13877100 AGAAAAATAGAG
1 AAAAAAATAAAG
13877112 AAAAAAATAAA-
1 AAAAAAATAAAG
*
13877123 AATAAAAA-AATAA
1 AA-AAAAATAA-AG
13877136 AAAAAAATAAA-
1 AAAAAAATAAAG
13877147 AAAAA
1 AAAAA
13877152 TGGAGAGGCC
Statistics
Matches: 43, Mismatches: 4, Indels: 10
0.75 0.07 0.18
Matches are distributed among these distances:
11 15 0.35
12 24 0.56
13 4 0.09
ACGTcount: A:0.86, C:0.00, G:0.06, T:0.08
Consensus pattern (12 bp):
AAAAAAATAAAG
Found at i:13877123 original size:18 final size:18
Alignment explanation
Indices: 13877089--13877150 Score: 65
Period size: 18 Copynumber: 3.4 Consensus size: 18
13877079 GAGATGTTTC
13877089 AAAAAAA-AAAGAGAAAAAT
1 AAAAAAATAAA-A-AAAAAT
* *
13877108 AGAGAAAA-AAATAAAAAT
1 A-AAAAAATAAAAAAAAAT
13877126 AAAAAAATAAAAAAAAAT
1 AAAAAAATAAAAAAAAAT
13877144 AAAAAAA
1 AAAAAAA
13877151 ATGGAGAGGC
Statistics
Matches: 37, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
17 5 0.14
18 23 0.62
19 1 0.03
20 8 0.22
ACGTcount: A:0.85, C:0.00, G:0.06, T:0.08
Consensus pattern (18 bp):
AAAAAAATAAAAAAAAAT
Found at i:13877129 original size:24 final size:24
Alignment explanation
Indices: 13877089--13877148 Score: 68
Period size: 24 Copynumber: 2.5 Consensus size: 24
13877079 GAGATGTTTC
* * *
13877089 AAAAAAA-AAAGAGAAAAATAGAG
1 AAAAAAATAAAAAGAAAAAAAGAA
* *
13877112 AAAAAAATAAAAATAAAAAAATAA
1 AAAAAAATAAAAAGAAAAAAAGAA
13877136 AAAAAAATAAAAA
1 AAAAAAATAAAAA
13877149 AAATGGAGAG
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
23 7 0.23
24 24 0.77
ACGTcount: A:0.85, C:0.00, G:0.07, T:0.08
Consensus pattern (24 bp):
AAAAAAATAAAAAGAAAAAAAGAA
Found at i:13877131 original size:14 final size:14
Alignment explanation
Indices: 13877112--13877152 Score: 59
Period size: 14 Copynumber: 3.0 Consensus size: 14
13877102 AAAAATAGAG
13877112 AAAAAAATAAAAAT
1 AAAAAAATAAAAAT
13877126 AAAAAAATAAAAA-
1 AAAAAAATAAAAAT
13877139 AAAATAAA-AAAAAT
1 AAAA-AAATAAAAAT
13877153 GGAGAGGCCA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
13 9 0.36
14 16 0.64
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (14 bp):
AAAAAAATAAAAAT
Found at i:13878182 original size:119 final size:119
Alignment explanation
Indices: 13877987--13878533 Score: 905
Period size: 119 Copynumber: 4.7 Consensus size: 119
13877977 AGACAATTAG
*
13877987 ACTGAAGCAGATTCAAGATGATTTGGTATTCTTGTGTTTACAAGGAACAAATCGAGGACATAGCA
1 ACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGTTTACAAGGAACAAATCGAGGACATAGCA
*
13878052 GATTTGACTCTCAGACATTCTCAGATATTGCAGATCTAACCTTCAGATGTTTAT
66 GATTTGACTCTCAGACATTCTCAGATATAGCAGATCTAACCTTCAGATGTTTAT
* * * *
13878106 ACTGAAGCAGATCCAAGATGATTTGGTGTTCTTGTGTTTACAAGGAACAAACCTAGGACATAGTA
1 ACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGTTTACAAGGAACAAATCGAGGACATAGCA
* *
13878171 GATTTGACTCTCAGACGTTCTCAAATATAGCAGA--T---C-T---ATGTTTAT
66 GATTTGACTCTCAGACATTCTCAGATATAGCAGATCTAACCTTCAGATGTTTAT
13878216 ACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGTTTACAAGGAACAAATCGAGGACATAGCA
1 ACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGTTTACAAGGAACAAATCGAGGACATAGCA
* **
13878281 GATTTGACTCTCAGACGTTCTCAGATATAATAGATCTAACCTTCAGATGTTTAT
66 GATTTGACTCTCAGACATTCTCAGATATAGCAGATCTAACCTTCAGATGTTTAT
*
13878335 ACTGAAGCAGATCCAAGATGATTTGGTGTTCTTGTGTTTACAAGGAACAAATCGAGGACATAGCA
1 ACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGTTTACAAGGAACAAATCGAGGACATAGCA
13878400 GATTTGACTCTCAGACATTCTCAGATATAGCAGATCTAACCTTCAGATGTTTAT
66 GATTTGACTCTCAGACATTCTCAGATATAGCAGATCTAACCTTCAGATGTTTAT
*
13878454 ACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGTTTACAAGAAACAAATCGAGGACATAGCA
1 ACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGTTTACAAGGAACAAATCGAGGACATAGCA
*
13878519 GATTGGACTCTCAGA
66 GATTTGACTCTCAGA
13878534 TGTTCTCAAA
Statistics
Matches: 397, Mismatches: 22, Indels: 18
0.91 0.05 0.04
Matches are distributed among these distances:
110 100 0.25
112 1 0.00
113 1 0.00
114 1 0.00
115 1 0.00
116 1 0.00
117 1 0.00
119 291 0.73
ACGTcount: A:0.33, C:0.17, G:0.20, T:0.31
Consensus pattern (119 bp):
ACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGTTTACAAGGAACAAATCGAGGACATAGCA
GATTTGACTCTCAGACATTCTCAGATATAGCAGATCTAACCTTCAGATGTTTAT
Found at i:13878395 original size:229 final size:233
Alignment explanation
Indices: 13877987--13878541 Score: 920
Period size: 229 Copynumber: 2.4 Consensus size: 233
13877977 AGACAATTAG
*
13877987 ACTGAAGCAGATTCAAGATGATTTGGTATTCTTGTGTTTACAAGGAACAAATCGAGGACATAGCA
1 ACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGTTTACAAGGAACAAATCGAGGACATAGCA
* **
13878052 GATTTGACTCTCAGACATTCTCAGATATTGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGA
66 GATTTGACTCTCAGACGTTCTCAGATATAACAGATCTAACCTTCAGATGTTTATACTGAAGCAGA
* *
13878117 TCCAAGATGATTTGGTGTTCTTGTGTTTACAAGGAACAAACCTAGGACATAGTAGATTTGACTCT
131 TCCAAGATGATTTGGTGTTCTTGTGTTTACAAGGAACAAACCGAGGACATAGCAGATTTGACTCT
*
13878182 CAGACGTTCTCAAATATAGCAGA-T-C-T-ATGTTTAT
196 CAGACATTCTCAAATATAGCAGACTACTTAATGTTTAT
13878216 ACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGTTTACAAGGAACAAATCGAGGACATAGCA
1 ACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGTTTACAAGGAACAAATCGAGGACATAGCA
*
13878281 GATTTGACTCTCAGACGTTCTCAGATATAATAGATCTAACCTTCAGATGTTTATACTGAAGCAGA
66 GATTTGACTCTCAGACGTTCTCAGATATAACAGATCTAACCTTCAGATGTTTATACTGAAGCAGA
*
13878346 TCCAAGATGATTTGGTGTTCTTGTGTTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCT
131 TCCAAGATGATTTGGTGTTCTTGTGTTTACAAGGAACAAACCGAGGACATAGCAGATTTGACTCT
*
13878411 CAGACATTCTCAGATATAGCAGATCTAACCTTCAGATGTTTAT
196 CAGACATTCTCAAATATAGCAGA-CT-A-CTT-A-ATGTTTAT
*
13878454 ACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGTTTACAAGAAACAAATCGAGGACATAGCA
1 ACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGTTTACAAGGAACAAATCGAGGACATAGCA
* *
13878519 GATTGGACTCTCAGATGTTCTCA
66 GATTTGACTCTCAGACGTTCTCA
13878542 AACAAACTCA
Statistics
Matches: 304, Mismatches: 13, Indels: 9
0.93 0.04 0.03
Matches are distributed among these distances:
229 208 0.68
231 1 0.00
234 1 0.00
235 1 0.00
238 93 0.31
ACGTcount: A:0.32, C:0.17, G:0.20, T:0.31
Consensus pattern (233 bp):
ACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGTTTACAAGGAACAAATCGAGGACATAGCA
GATTTGACTCTCAGACGTTCTCAGATATAACAGATCTAACCTTCAGATGTTTATACTGAAGCAGA
TCCAAGATGATTTGGTGTTCTTGTGTTTACAAGGAACAAACCGAGGACATAGCAGATTTGACTCT
CAGACATTCTCAAATATAGCAGACTACTTAATGTTTAT
Found at i:13878569 original size:83 final size:83
Alignment explanation
Indices: 13878467--13878746 Score: 361
Period size: 83 Copynumber: 3.5 Consensus size: 83
13878457 GAAGCAGATC
*
13878467 CAAGATGATTTGGTATTCTTGTGTTTACAAGAAACAAATCGAGGACATAGCAGATTGGACTCTCA
1 CAAGATGATTTGGCATTCTTGTGTTTACAAGAAACAAATCGAGGACATAGCAGATTGGACTCTCA
13878532 GATGTTCTCAAACAAACT
66 GATGTTCTCAAACAAACT
13878550 CAAGATGATTTGGCATTC------TT----GAAACAAATCGAGGACATAGCAGATTGGACTCTCA
1 CAAGATGATTTGGCATTCTTGTGTTTACAAGAAACAAATCGAGGACATAGCAGATTGGACTCTCA
13878605 GATGTTCTCAAACAAACT
66 GATGTTCTCAAACAAACT
*
13878623 CAAGATGATTTGGCATTCTTGTGTTTACAAGAAACAAATCGAGGACGTAGCAGATTTGG-CTCTC
1 CAAGATGATTTGGCATTCTTGTGTTTACAAGAAACAAATCGAGGACATAGCAGA-TTGGACTCTC
*
13878687 A-AGTGTTCTCAAACAGAC-
65 AGA-TGTTCTCAAACAAACT
* * ** * *
13878705 CTAAGATGGTTTGGCATCCTTGTACTTACAAGGAGCAAATCG
1 C-AAGATGATTTGGCATTCTTGTGTTTACAAGAAACAAATCG
13878747 GAGACGTAGC
Statistics
Matches: 175, Mismatches: 9, Indels: 26
0.83 0.04 0.12
Matches are distributed among these distances:
73 71 0.41
77 2 0.01
79 2 0.01
82 2 0.01
83 94 0.54
84 4 0.02
ACGTcount: A:0.33, C:0.18, G:0.21, T:0.28
Consensus pattern (83 bp):
CAAGATGATTTGGCATTCTTGTGTTTACAAGAAACAAATCGAGGACATAGCAGATTGGACTCTCA
GATGTTCTCAAACAAACT
Found at i:13878584 original size:73 final size:73
Alignment explanation
Indices: 13878497--13878643 Score: 294
Period size: 73 Copynumber: 2.0 Consensus size: 73
13878487 GTGTTTACAA
13878497 GAAACAAATCGAGGACATAGCAGATTGGACTCTCAGATGTTCTCAAACAAACTCAAGATGATTTG
1 GAAACAAATCGAGGACATAGCAGATTGGACTCTCAGATGTTCTCAAACAAACTCAAGATGATTTG
13878562 GCATTCTT
66 GCATTCTT
13878570 GAAACAAATCGAGGACATAGCAGATTGGACTCTCAGATGTTCTCAAACAAACTCAAGATGATTTG
1 GAAACAAATCGAGGACATAGCAGATTGGACTCTCAGATGTTCTCAAACAAACTCAAGATGATTTG
13878635 GCATTCTT
66 GCATTCTT
13878643 G
1 G
13878644 TGTTTACAAG
Statistics
Matches: 74, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
73 74 1.00
ACGTcount: A:0.35, C:0.19, G:0.20, T:0.26
Consensus pattern (73 bp):
GAAACAAATCGAGGACATAGCAGATTGGACTCTCAGATGTTCTCAAACAAACTCAAGATGATTTG
GCATTCTT
Found at i:13878753 original size:83 final size:83
Alignment explanation
Indices: 13878570--13878766 Score: 249
Period size: 83 Copynumber: 2.4 Consensus size: 83
13878560 TGGCATTCTT
*
13878570 GAAACAAATCGAGGACATAGCAGA-TTGGACTCTCAGATGTTCTCAAACAAACTCAAGATGATTT
1 GAAACAAATCGAGGACGTAGCAGATTTGG-CTCTCAGATGTTCTCAAACAAACTCAAGATGATTT
* **
13878634 GGCATTCTTGTGTTTACAA
65 GGCATCCTTGTACTTACAA
* *
13878653 GAAACAAATCGAGGACGTAGCAGATTTGGCTCTCA-AGTGTTCTCAAACAGAC-CTAAGATGGTT
1 GAAACAAATCGAGGACGTAGCAGATTTGGCTCTCAGA-TGTTCTCAAACAAACTC-AAGATGATT
13878716 TGGCATCCTTGTACTTACAA
64 TGGCATCCTTGTACTTACAA
* * *
13878736 GGAGCAAATCG-GAGACGTAGCTGATTTGGCT
1 GAAACAAATCGAG-GACGTAGCAGATTTGGCT
13878767 TTCACGTGCT
Statistics
Matches: 101, Mismatches: 9, Indels: 8
0.86 0.08 0.07
Matches are distributed among these distances:
82 3 0.03
83 94 0.93
84 4 0.04
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.26
Consensus pattern (83 bp):
GAAACAAATCGAGGACGTAGCAGATTTGGCTCTCAGATGTTCTCAAACAAACTCAAGATGATTTG
GCATCCTTGTACTTACAA
Found at i:13889970 original size:24 final size:24
Alignment explanation
Indices: 13889907--13889958 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
13889897 TTTCTAGAAG
* * *
13889907 ATTTAGTATTTATGAGTATAATAT
1 ATTTAGCATTTATTAGCATAATAT
13889931 ATTTAGCATTTATTAGCATAATAT
1 ATTTAGCATTTATTAGCATAATAT
13889955 ATTT
1 ATTT
13889959 GACTTTGATT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.37, C:0.04, G:0.10, T:0.50
Consensus pattern (24 bp):
ATTTAGCATTTATTAGCATAATAT
Found at i:13902670 original size:10 final size:10
Alignment explanation
Indices: 13902657--13902684 Score: 56
Period size: 10 Copynumber: 2.8 Consensus size: 10
13902647 CTATTCAAAT
13902657 ATCAAATATC
1 ATCAAATATC
13902667 ATCAAATATC
1 ATCAAATATC
13902677 ATCAAATA
1 ATCAAATA
13902685 AATCAATTTC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.54, C:0.18, G:0.00, T:0.29
Consensus pattern (10 bp):
ATCAAATATC
Found at i:13903436 original size:19 final size:20
Alignment explanation
Indices: 13903396--13903437 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 20
13903386 TTGATTCATG
13903396 TTTTCAATCTCATATCTCAA
1 TTTTCAATCTCATATCTCAA
13903416 TTTTCAATTCTCA-AT-TCAA
1 TTTTCAA-TCTCATATCTCAA
13903435 TTT
1 TTT
13903438 CTCGTTTCAT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 7 0.33
20 9 0.43
21 5 0.24
ACGTcount: A:0.29, C:0.21, G:0.00, T:0.50
Consensus pattern (20 bp):
TTTTCAATCTCATATCTCAA
Found at i:13913609 original size:15 final size:15
Alignment explanation
Indices: 13913583--13913637 Score: 76
Period size: 15 Copynumber: 3.7 Consensus size: 15
13913573 CATATATATT
*
13913583 ATATAA-TTCAATTA
1 ATATAATTTCAATCA
13913597 ATATAATTTCAATCA
1 ATATAATTTCAATCA
*
13913612 AAATAATTTCAATCA
1 ATATAATTTCAATCA
*
13913627 ATATAAATTCA
1 ATATAATTTCA
13913638 GTAAATTCAT
Statistics
Matches: 36, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
14 6 0.17
15 30 0.83
ACGTcount: A:0.51, C:0.11, G:0.00, T:0.38
Consensus pattern (15 bp):
ATATAATTTCAATCA
Found at i:13919118 original size:42 final size:43
Alignment explanation
Indices: 13918999--13919170 Score: 136
Period size: 43 Copynumber: 4.0 Consensus size: 43
13918989 ACATAGGATC
* * * * * *
13918999 CGATATTTGTTTTTGTGTAAGACTACGTCTTGGAC-GTTGACAT
1 CGATATTTGATTTCGTGTAAGACCATGTCTGGGACAG-TGGCAT
* *
13919042 CGACT-TATGATTTACGTGTAAGACCATGTTTGGGACA-TCGGCAT
1 CGA-TATTTGATTT-CGTGTAAGACCATGTCTGGGACAGT-GGCAT
* *
13919086 CG-TATTTGATTTCGTGTAAGACCCTGTCTGGGATAGTGGCAT
1 CGATATTTGATTTCGTGTAAGACCATGTCTGGGACAGTGGCAT
* * * ** *
13919128 CGATATTTGATTACATGTAAGACCACGTCAAGGACATTGGCAT
1 CGATATTTGATTTCGTGTAAGACCATGTCTGGGACAGTGGCAT
13919171 TGTATGAGCT
Statistics
Matches: 102, Mismatches: 20, Indels: 14
0.75 0.15 0.10
Matches are distributed among these distances:
42 28 0.27
43 50 0.49
44 24 0.24
ACGTcount: A:0.24, C:0.17, G:0.24, T:0.34
Consensus pattern (43 bp):
CGATATTTGATTTCGTGTAAGACCATGTCTGGGACAGTGGCAT
Found at i:13928926 original size:21 final size:22
Alignment explanation
Indices: 13928874--13928928 Score: 64
Period size: 21 Copynumber: 2.6 Consensus size: 22
13928864 TTAAAATGTA
13928874 AAATTTGT-AAATTGAGGGACT
1 AAATTTGTAAAATTGAGGGACT
*
13928895 AAATATG-AAAATGTGAGGG-CT
1 AAATTTGTAAAAT-TGAGGGACT
13928916 -AATTTGTAAAATT
1 AAATTTGTAAAATT
13928929 CGCTAAATAT
Statistics
Matches: 29, Mismatches: 2, Indels: 7
0.76 0.05 0.18
Matches are distributed among these distances:
20 6 0.21
21 17 0.59
22 6 0.21
ACGTcount: A:0.42, C:0.04, G:0.22, T:0.33
Consensus pattern (22 bp):
AAATTTGTAAAATTGAGGGACT
Found at i:13929370 original size:44 final size:42
Alignment explanation
Indices: 13929301--13929413 Score: 118
Period size: 43 Copynumber: 2.6 Consensus size: 42
13929291 AGACCACGTT
* * * *
13929301 TGGGACGTTGGCATCGACTTATGATTTATGTGTAAGACAATATC
1 TGGGACATTGGCATCGA-TTTTGATTT-CGTGTAAAACAATATC
**
13929345 TGGGACATTGGCATCGTATTTTGATTTCGTGTAAAACCCTATC
1 TGGGACATTGGCATCG-ATTTTGATTTCGTGTAAAACAATATC
* *
13929388 TAGGACAATGGCATCGATATTTGATT
1 TGGGACATTGGCATCGAT-TTTGATT
13929414 ATATCTATGT
Statistics
Matches: 59, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
42 2 0.03
43 33 0.56
44 23 0.39
45 1 0.02
ACGTcount: A:0.27, C:0.15, G:0.23, T:0.35
Consensus pattern (42 bp):
TGGGACATTGGCATCGATTTTGATTTCGTGTAAAACAATATC
Found at i:13929901 original size:42 final size:43
Alignment explanation
Indices: 13929832--13929953 Score: 140
Period size: 43 Copynumber: 2.8 Consensus size: 43
13929822 CATCGACTTA
* *
13929832 TGATTTACGTGTAAGACCATGTTTGGGACA-TCGGCATCG-TATT
1 TGATTT-CATGTAAGACCATGTCTGGGACAGT-GGCATCGATATT
*
13929875 TGATTTCATGTAAGACCCTGTCTGGGACAGTGGCATCGATATT
1 TGATTTCATGTAAGACCATGTCTGGGACAGTGGCATCGATATT
* * ** *
13929918 TGATTACATGTAAGACCACGTCAAGGACATTGGCAT
1 TGATTTCATGTAAGACCATGTCTGGGACAGTGGCAT
13929954 TGTACGAGCT
Statistics
Matches: 68, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
42 27 0.40
43 41 0.60
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.31
Consensus pattern (43 bp):
TGATTTCATGTAAGACCATGTCTGGGACAGTGGCATCGATATT
Found at i:13930195 original size:515 final size:510
Alignment explanation
Indices: 13929229--13930230 Score: 1587
Period size: 515 Copynumber: 2.0 Consensus size: 510
13929219 GCCCCATACG
* *
13929229 AACCATAGGAATACTTAGGATACATATGTCATGACATAGGATCCGATATGTGTTTTTGTGTAAGA
1 AACCATAAGAATACTTAGGATACATATGTCATGACATAGGATCCGATATGTATTTTTGTGTAAGA
* * *
13929294 CCACGTTTGGGACGTTGGCATCGACTTATGATTTATGTGTAAGACAATATCTGGGACATTGGCAT
66 CCACGTTTGGGACGTTGACATCGACTTATGATTTACGTGTAAGACAATATCTGGGACATCGGCAT
* * * *
13929359 CGTATTTTGATTTCGTGTAAAACCCTATCTAGGACAATGGCATCGATATTTGATTATATCTATGT
131 CGTATTTTGATTTCATGTAAAACCCTATCTAGGACAATGGCATCGATATTTGATTATAACCACGT
* * **
13929424 CTGGAACGTTGGAATTGTACGAGCTTTTCGAGTTATCCGTGTATCCTTATGATTCCGAACGGTTC
196 CAGGAACATTGGAATTGTACGAGCTTTTCGAGTTATCCGCATATCCTTATGATTCCGAACGGTTC
** * *
13929489 AACGGGCATTCTGAGAAATGAATGATTATATGAAATGTGTATCTGATTCAGGTACGTTTGAAATT
261 AACGGGCATTCCAAGAAACGAATGATTATATGAAATGTGTATCCGATTCAGGTACGTTTGAAATT
*
13929554 GTATATCATATTTGATGTTGAAAGGTGAGTATATGTATCTTTGTGATCAAGTGATTATATGTGAC
326 GTATATCATATTTGATGTTGAAAGGTAAGTATATGTATCTTTGTGATCAAGTGATTATATGTGAC
13929619 AAAAGTATGAGAAAATATGCTATATGTGAAAATGAATGGGGAATATGTGAAATGTATTTGAGCTA
391 AAAAGTATGAGAAAATATGCTATATGTGAAAATGAATGGGGAATATGTGAAATGTATTTGAGCTA
* *
13929684 TGTGGTTTGTGGTAGCATTTGGCTAAGGAGTAGTTTATATGCTCTTGAATAAACA
456 TGTGGTTTGTGATAGCATTTGGCTAAAGAGTAGTTTATATGCTCTTGAATAAACA
* * *
13929739 AACCATAAGAATAGTTAGGATACATATTTCATGACATAGGATCCGATATTTATTTTTGTGTAAGA
1 AACCATAAGAATACTTAGGATACATATGTCATGACATAGGATCCGATATGTATTTTTGTGTAAGA
* * * *
13929804 CTACGTCTT-GGACGTTGACATCGACTTATGATTTACGTGTAAGACCATGTTTGGGACATCGGCA
66 CCACGT-TTGGGACGTTGACATCGACTTATGATTTACGTGTAAGACAATATCTGGGACATCGGCA
* * * *
13929868 TCGTA-TTTGATTTCATGTAAGACCCTGTCTGGGACAGTGGCATCGATATTTGATTACATGTAAG
130 TCGTATTTTGATTTCATGTAAAACCCTATCTAGGACAATGGCATCGATATTTGATT--A--T-A-
* *
13929932 ACCACGTCAAGG-ACATTGGCATTGTACGAGCTTTTCGAGTTATCCGCATATCCTTATGATTCTG
189 ACCACGTC-AGGAACATTGGAATTGTACGAGCTTTTCGAGTTATCCGCATATCCTTATGATTCCG
*
13929996 AATGGTTCAACGGGCATTCCAAGAAACGAATGATTATATGAAATGTGTATCCGATTCAGGTACGT
253 AACGGTTCAACGGGCATTCCAAGAAACGAATGATTATATGAAATGTGTATCCGATTCAGGTACGT
*
13930061 TTGAAATTGTATATCATATTTGATGTTGAAAGGTAAGTATATGTATCTTTGTGATCAAGTGATTG
318 TTGAAATTGTATATCATATTTGATGTTGAAAGGTAAGTATATGTATCTTTGTGATCAAGTGATTA
*
13930126 TATGTGACAAAAGTATGAGAAAATATGCTATATGTGCAAATGAATGGGGAATATGTGAAATGTAT
383 TATGTGACAAAAGTATGAGAAAATATGCTATATGTGAAAATGAATGGGGAATATGTGAAATGTAT
13930191 TTGAGCTATGTGGTTTGTGATAGCATTTGGCTAAAGAGTA
448 TTGAGCTATGTGGTTTGTGATAGCATTTGGCTAAAGAGTA
13930231 TATGTATATT
Statistics
Matches: 448, Mismatches: 36, Indels: 11
0.91 0.07 0.02
Matches are distributed among these distances:
509 45 0.10
510 119 0.27
511 3 0.01
513 1 0.00
514 1 0.00
515 277 0.62
516 2 0.00
ACGTcount: A:0.30, C:0.12, G:0.23, T:0.35
Consensus pattern (510 bp):
AACCATAAGAATACTTAGGATACATATGTCATGACATAGGATCCGATATGTATTTTTGTGTAAGA
CCACGTTTGGGACGTTGACATCGACTTATGATTTACGTGTAAGACAATATCTGGGACATCGGCAT
CGTATTTTGATTTCATGTAAAACCCTATCTAGGACAATGGCATCGATATTTGATTATAACCACGT
CAGGAACATTGGAATTGTACGAGCTTTTCGAGTTATCCGCATATCCTTATGATTCCGAACGGTTC
AACGGGCATTCCAAGAAACGAATGATTATATGAAATGTGTATCCGATTCAGGTACGTTTGAAATT
GTATATCATATTTGATGTTGAAAGGTAAGTATATGTATCTTTGTGATCAAGTGATTATATGTGAC
AAAAGTATGAGAAAATATGCTATATGTGAAAATGAATGGGGAATATGTGAAATGTATTTGAGCTA
TGTGGTTTGTGATAGCATTTGGCTAAAGAGTAGTTTATATGCTCTTGAATAAACA
Found at i:13930716 original size:21 final size:22
Alignment explanation
Indices: 13930685--13930725 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
13930675 TATGTTTTGG
13930685 TATGTCTTTGGCTTATGAATGT
1 TATGTCTTTGGCTTATGAATGT
* *
13930707 TATGT-TTTGGTTTGTGAAT
1 TATGTCTTTGGCTTATGAAT
13930726 TATGAATAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 12 0.71
22 5 0.29
ACGTcount: A:0.17, C:0.05, G:0.24, T:0.54
Consensus pattern (22 bp):
TATGTCTTTGGCTTATGAATGT
Found at i:13933254 original size:24 final size:24
Alignment explanation
Indices: 13933191--13933242 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
13933181 TTTCTAGAAG
* * *
13933191 ATTTAGTATTTATGAGTATAATAT
1 ATTTAGCATTTATTAGCATAATAT
13933215 ATTTAGCATTTATTAGCATAATAT
1 ATTTAGCATTTATTAGCATAATAT
13933239 ATTT
1 ATTT
13933243 GACTTTGATT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.37, C:0.04, G:0.10, T:0.50
Consensus pattern (24 bp):
ATTTAGCATTTATTAGCATAATAT
Found at i:13933616 original size:14 final size:14
Alignment explanation
Indices: 13933597--13933625 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
13933587 ATATTAAATG
13933597 TTGCAAAATAATTT
1 TTGCAAAATAATTT
13933611 TTGCAAAATAATTT
1 TTGCAAAATAATTT
13933625 T
1 T
13933626 CTTAACAATC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.41, C:0.07, G:0.07, T:0.45
Consensus pattern (14 bp):
TTGCAAAATAATTT
Found at i:13933758 original size:8 final size:8
Alignment explanation
Indices: 13933725--13933782 Score: 53
Period size: 8 Copynumber: 6.9 Consensus size: 8
13933715 ATTATTTAAA
13933725 TAATTTTT
1 TAATTTTT
*
13933733 TGAATTTTA
1 T-AATTTTT
**
13933742 TAAGATTT
1 TAATTTTT
13933750 TAATTTTT
1 TAATTTTT
13933758 TAATTTTTT
1 TAA-TTTTT
*
13933767 TAAATTTTA
1 T-AATTTTT
13933776 TAATTTT
1 TAATTTT
13933783 ATATTATTTA
Statistics
Matches: 40, Mismatches: 7, Indels: 6
0.75 0.13 0.11
Matches are distributed among these distances:
8 20 0.50
9 18 0.45
10 2 0.05
ACGTcount: A:0.31, C:0.00, G:0.03, T:0.66
Consensus pattern (8 bp):
TAATTTTT
Found at i:13933765 original size:25 final size:24
Alignment explanation
Indices: 13933725--13933775 Score: 68
Period size: 25 Copynumber: 2.1 Consensus size: 24
13933715 ATTATTTAAA
13933725 TAATTTTTTGAATTTTATAAGATTT
1 TAATTTTTTGAATTTTATAA-ATTT
*
13933750 TAATTTTTT-AATTTTTTTAAATTT
1 TAATTTTTTGAA-TTTTATAAATTT
13933774 TA
1 TA
13933776 TAATTTTATA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
24 8 0.33
25 16 0.67
ACGTcount: A:0.31, C:0.00, G:0.04, T:0.65
Consensus pattern (24 bp):
TAATTTTTTGAATTTTATAAATTT
Found at i:13933779 original size:18 final size:16
Alignment explanation
Indices: 13933724--13933782 Score: 64
Period size: 17 Copynumber: 3.5 Consensus size: 16
13933714 TATTATTTAA
13933724 ATAATTTTTTGAATTTT
1 ATAATTTTTT-AATTTT
**
13933741 ATAAGATTTTAATTTT
1 ATAATTTTTTAATTTT
*
13933757 TTAATTTTTTTAAATTTT
1 ATAA-TTTTTT-AATTTT
13933775 ATAATTTT
1 ATAATTTT
13933783 ATATTATTTA
Statistics
Matches: 34, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
16 9 0.26
17 16 0.47
18 9 0.26
ACGTcount: A:0.32, C:0.00, G:0.03, T:0.64
Consensus pattern (16 bp):
ATAATTTTTTAATTTT
Found at i:13938259 original size:68 final size:67
Alignment explanation
Indices: 13938187--13938336 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
13938177 CATCATGTGT
* * * *
13938187 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
13938249 ATGTAG
62 ATGTAG
** * *
13938255 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
13938320 AG
66 AG
13938322 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
13938337 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:13938292 original size:64 final size:64
Alignment explanation
Indices: 13938211--13938394 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
13938201 AGACATTATG
* *
13938211 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
13938275 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
13938340 AA
63 AA
* * * *
13938342 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
13938395 CGAACTATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 21 0.21
65 8 0.08
66 16 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:13948462 original size:43 final size:43
Alignment explanation
Indices: 13948403--13948486 Score: 132
Period size: 43 Copynumber: 2.0 Consensus size: 43
13948393 GAGATATGTG
*
13948403 GCATCCAAGCTCGTTGAGAGGTCCGAGTTCATTATGGATGCGA
1 GCATCCAAGCTCGTTGAGAGGTCCGAGTTCATAATGGATGCGA
* * *
13948446 GCATCCGAGCTTGTTGAGAGGTCTGAGTTCATAATGGATGC
1 GCATCCAAGCTCGTTGAGAGGTCCGAGTTCATAATGGATGC
13948487 AATTCATGTA
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 37 1.00
ACGTcount: A:0.23, C:0.19, G:0.31, T:0.27
Consensus pattern (43 bp):
GCATCCAAGCTCGTTGAGAGGTCCGAGTTCATAATGGATGCGA
Found at i:13951296 original size:29 final size:29
Alignment explanation
Indices: 13951229--13951388 Score: 248
Period size: 29 Copynumber: 5.4 Consensus size: 29
13951219 GACAAGATTG
* * * *
13951229 GCACTAAGTGTGCGGGTTTAAAAATTATACA
1 GCACTAAGTGTGCGAG-CTGAAAA-TATATA
*
13951260 GCACTAAGTGTGCGAACTGAAAATATATA
1 GCACTAAGTGTGCGAGCTGAAAATATATA
13951289 GCACTAAGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCGAGCTGAAAATATATA
13951318 GCACTAAGTGTGCGAGCTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAA-TATATA
13951348 GCACTAAGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCGAGCTGAAAATATATA
13951377 GCACTAAGTGTG
1 GCACTAAGTGTG
13951389 TGGATTCACT
Statistics
Matches: 122, Mismatches: 6, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
29 74 0.61
30 34 0.28
31 14 0.11
ACGTcount: A:0.37, C:0.14, G:0.24, T:0.26
Consensus pattern (29 bp):
GCACTAAGTGTGCGAGCTGAAAATATATA
Found at i:13951355 original size:59 final size:58
Alignment explanation
Indices: 13951229--13951388 Score: 248
Period size: 59 Copynumber: 2.7 Consensus size: 58
13951219 GACAAGATTG
* * * *
13951229 GCACTAAGTGTGCGGGTTTAAAAATTATACAGCACTAAGTGTGCGAACTGAAAATATATA
1 GCACTAAGTGTGCGAG-CTGAAAA-TATATAGCACTAAGTGTGCGAACTGAAAATATATA
*
13951289 GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCGAGCTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCGAACTGAAAA-TATATA
13951348 GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTG
1 GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTG
13951389 TGGATTCACT
Statistics
Matches: 94, Mismatches: 5, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
58 27 0.29
59 52 0.55
60 15 0.16
ACGTcount: A:0.37, C:0.14, G:0.24, T:0.26
Consensus pattern (58 bp):
GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCGAACTGAAAATATATA
Found at i:13959634 original size:43 final size:43
Alignment explanation
Indices: 13959586--13959671 Score: 127
Period size: 43 Copynumber: 2.0 Consensus size: 43
13959576 GAGATATGTG
*
13959586 GCATCCAAGCTCGTTAAGAGGTCCGAGTTCATTATGGATACGA
1 GCATCCAAGCTCGTTAAGAGGTCCGAGTTCATAATGGATACGA
* * * *
13959629 GCATCCGATCTCGTTGAGAGGTCCGAGTTCATAATGTATACGA
1 GCATCCAAGCTCGTTAAGAGGTCCGAGTTCATAATGGATACGA
13959672 TTCATGTAAC
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 38 1.00
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.27
Consensus pattern (43 bp):
GCATCCAAGCTCGTTAAGAGGTCCGAGTTCATAATGGATACGA
Found at i:13968229 original size:40 final size:39
Alignment explanation
Indices: 13968061--13968231 Score: 159
Period size: 40 Copynumber: 4.3 Consensus size: 39
13968051 AGAAATTGAA
* *
13968061 TGATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-AAAT-
1 TGATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATG
* * * * *
13968101 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
* *
13968141 CT-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTG
1 -TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA-ATG
* *
13968181 TTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
13968221 TGATATCCGGG
1 TGATATCCGGG
13968232 TAAAGTCCCG
Statistics
Matches: 107, Mismatches: 17, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
37 2 0.02
38 4 0.04
39 4 0.04
40 95 0.89
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (39 bp):
TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATG
Found at i:13977614 original size:47 final size:44
Alignment explanation
Indices: 13977502--13977623 Score: 131
Period size: 47 Copynumber: 2.6 Consensus size: 44
13977492 TCACTTGTGT
*
13977502 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGA
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCAG-C-CATTATGA
* *
13977548 GAGCCAGTGTAAGACCATGTTTGGGACATGGCATCAG-CATTGA-GA
1 GAGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCAGCCATT-ATGA
13977593 CGAGTGCTAGTGTAAGACATGTCTGGGACAT
1 -GA--GCTAGTGTAAGACATGTCTGGGACAT
13977624 CTATCGGCCT
Statistics
Matches: 65, Mismatches: 5, Indels: 11
0.80 0.06 0.14
Matches are distributed among these distances:
45 6 0.09
46 16 0.25
47 26 0.40
48 17 0.26
ACGTcount: A:0.28, C:0.18, G:0.30, T:0.24
Consensus pattern (44 bp):
GAGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCATTATGA
Found at i:13982076 original size:29 final size:28
Alignment explanation
Indices: 13981988--13982089 Score: 89
Period size: 29 Copynumber: 3.5 Consensus size: 28
13981978 TACTCAATCA
* *
13981988 CGCACACTTAGTGCCACGT-GATTCAAGCC
1 CGCACACTTAGTG-C-CGTACATTCAAGCT
* * * * *
13982017 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCGTACA-TTCAAGCT
13982046 CGCACACTTAGTGCCGTACATTACAAGCT
1 CGCACACTTAGTGCCGTACATT-CAAGCT
*
13982075 CGCACACTCAGTGCC
1 CGCACACTTAGTGCC
13982090 AATCTCGTCA
Statistics
Matches: 58, Mismatches: 12, Indels: 6
0.76 0.16 0.08
Matches are distributed among these distances:
27 2 0.03
28 3 0.05
29 53 0.91
ACGTcount: A:0.27, C:0.34, G:0.18, T:0.21
Consensus pattern (28 bp):
CGCACACTTAGTGCCGTACATTCAAGCT
Found at i:13989494 original size:13 final size:13
Alignment explanation
Indices: 13989476--13989514 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
13989466 GTTCGGCAGG
13989476 GACACGCCTGTGT
1 GACACGCCTGTGT
13989489 GACACGCCTGTGT
1 GACACGCCTGTGT
*
13989502 GACACGCCCGTGT
1 GACACGCCTGTGT
13989515 AAGTCGTGCT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.15, C:0.33, G:0.31, T:0.21
Consensus pattern (13 bp):
GACACGCCTGTGT
Found at i:13994739 original size:58 final size:58
Alignment explanation
Indices: 13994677--13994815 Score: 169
Period size: 58 Copynumber: 2.4 Consensus size: 58
13994667 TTAATTCATA
* *
13994677 TAATAGTAATTATATTAAGAATTTTATTAAATT-TTATATTA-TTTTATTAAATTATATT
1 TAATAATAATTATATTAA-AATTTGATTAAATTATT-TATTATTTTTATTAAATTATATT
* * *
13994735 TAATAATAATTA-AGTTAAAATATGGTTAAATTATTTATTATTTTTATTAAATTATTTT
1 TAATAATAATTATA-TTAAAATTTGATTAAATTATTTATTATTTTTATTAAATTATATT
13994793 TAATAATAATCT-TATTAAAATTT
1 TAATAATAAT-TATATTAAAATTT
13994816 AATAACAATA
Statistics
Matches: 70, Mismatches: 6, Indels: 10
0.81 0.07 0.12
Matches are distributed among these distances:
57 17 0.24
58 51 0.73
59 2 0.03
ACGTcount: A:0.42, C:0.01, G:0.04, T:0.53
Consensus pattern (58 bp):
TAATAATAATTATATTAAAATTTGATTAAATTATTTATTATTTTTATTAAATTATATT
Found at i:13995142 original size:34 final size:34
Alignment explanation
Indices: 13995099--13995201 Score: 206
Period size: 34 Copynumber: 3.0 Consensus size: 34
13995089 AAATAAAAAG
13995099 TAAATACATTTTTGGGTAAATTATAGCGGCTAAT
1 TAAATACATTTTTGGGTAAATTATAGCGGCTAAT
13995133 TAAATACATTTTTGGGTAAATTATAGCGGCTAAT
1 TAAATACATTTTTGGGTAAATTATAGCGGCTAAT
13995167 TAAATACATTTTTGGGTAAATTATAGCGGCTAAT
1 TAAATACATTTTTGGGTAAATTATAGCGGCTAAT
13995201 T
1 T
13995202 TACTAAAAAA
Statistics
Matches: 69, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 69 1.00
ACGTcount: A:0.35, C:0.09, G:0.17, T:0.39
Consensus pattern (34 bp):
TAAATACATTTTTGGGTAAATTATAGCGGCTAAT
Found at i:13997900 original size:15 final size:15
Alignment explanation
Indices: 13997880--13997931 Score: 50
Period size: 15 Copynumber: 3.2 Consensus size: 15
13997870 ACTATAAAAC
13997880 ATTTATTATTAATAT
1 ATTTATTATTAATAT
*
13997895 ATTTATAATTATAATAAAT
1 ATTTATTA-T-TAAT--AT
*
13997914 ATTTATTATTAAAAT
1 ATTTATTATTAATAT
13997929 ATT
1 ATT
13997932 AATATTGAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 8
0.73 0.07 0.20
Matches are distributed among these distances:
15 12 0.40
16 1 0.03
17 7 0.23
18 1 0.03
19 9 0.30
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (15 bp):
ATTTATTATTAATAT
Found at i:13997917 original size:19 final size:19
Alignment explanation
Indices: 13997893--13997929 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
13997883 TATTATTAAT
*
13997893 ATATTTATAATTATAATAA
1 ATATTTATAATTAAAATAA
*
13997912 ATATTTATTATTAAAATA
1 ATATTTATAATTAAAATA
13997930 TTAATATTGA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (19 bp):
ATATTTATAATTAAAATAA
Found at i:13998052 original size:22 final size:22
Alignment explanation
Indices: 13998012--13998067 Score: 62
Period size: 22 Copynumber: 2.6 Consensus size: 22
13998002 AATAAAATTG
*
13998012 AAATATTAAA-TA-ATTTATTA
1 AAATAATAAATTATATTTATTA
13998032 AAATAATAAATTATATTTATTA
1 AAATAATAAATTATATTTATTA
* * *
13998054 TATTAATAATTTAT
1 AAATAATAAATTAT
13998068 TATATGACTA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
20 9 0.30
21 2 0.07
22 19 0.63
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (22 bp):
AAATAATAAATTATATTTATTA
Found at i:14000025 original size:20 final size:19
Alignment explanation
Indices: 14000000--14000064 Score: 60
Period size: 20 Copynumber: 3.4 Consensus size: 19
13999990 GGTATCACCA
14000000 TAAAAATTTTGATATTGAGT
1 TAAAAATTTTGATATT-AGT
* * *
14000020 TAAAAATATTGGTATTCGT
1 TAAAAATTTTGATATTAGT
* *
14000039 T-AAAATTTTTAGTATTAAT
1 TAAAAATTTTGA-TATTAGT
14000058 TAAAAAT
1 TAAAAAT
14000065 CTGTATTGTG
Statistics
Matches: 35, Mismatches: 8, Indels: 4
0.74 0.17 0.09
Matches are distributed among these distances:
18 7 0.20
19 9 0.26
20 19 0.54
ACGTcount: A:0.43, C:0.02, G:0.11, T:0.45
Consensus pattern (19 bp):
TAAAAATTTTGATATTAGT
Found at i:14000526 original size:23 final size:23
Alignment explanation
Indices: 14000500--14000545 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
14000490 TTTTAAGCAA
* *
14000500 TTTAATTTTTTCTTTTTTGTTCT
1 TTTAACTTTATCTTTTTTGTTCT
*
14000523 TTTAACTTTATCTTTTTTTTTCT
1 TTTAACTTTATCTTTTTTGTTCT
14000546 GTTTTTTTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.11, C:0.11, G:0.02, T:0.76
Consensus pattern (23 bp):
TTTAACTTTATCTTTTTTGTTCT
Found at i:14001525 original size:20 final size:20
Alignment explanation
Indices: 14001502--14001542 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
14001492 ATAAATTAAT
*
14001502 TTAATTAAAATTAAATAAAA
1 TTAATTAAAATCAAATAAAA
**
14001522 TTAATTGGAATCAAATAAAA
1 TTAATTAAAATCAAATAAAA
14001542 T
1 T
14001543 AAGATAAATA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.59, C:0.02, G:0.05, T:0.34
Consensus pattern (20 bp):
TTAATTAAAATCAAATAAAA
Found at i:14002889 original size:15 final size:15
Alignment explanation
Indices: 14002869--14002921 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
14002859 ACAACATAAT
14002869 AATGTAAATGACTAA
1 AATGTAAATGACTAA
**
14002884 AATGTAACATTTCTAA
1 AATGTAA-ATGACTAA
*
14002900 CA--TAAATGACTAA
1 AATGTAAATGACTAA
14002913 AATGTAAAT
1 AATGTAAAT
14002922 TGAGACATAC
Statistics
Matches: 29, Mismatches: 6, Indels: 6
0.71 0.15 0.15
Matches are distributed among these distances:
13 7 0.24
14 3 0.10
15 12 0.41
16 7 0.24
ACGTcount: A:0.51, C:0.09, G:0.09, T:0.30
Consensus pattern (15 bp):
AATGTAAATGACTAA
Found at i:14003510 original size:20 final size:20
Alignment explanation
Indices: 14003463--14003510 Score: 53
Period size: 20 Copynumber: 2.4 Consensus size: 20
14003453 CGCTAGAAAT
* *
14003463 TTAGAAATATTGTTATTCGA
1 TTAGAAATAATGGTATTCGA
*
14003483 TTAAAAATAATGGTATCTCG-
1 TTAGAAATAATGGTAT-TCGA
14003503 TTAGAAAT
1 TTAGAAAT
14003511 CTTGATATCA
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
20 20 0.87
21 3 0.13
ACGTcount: A:0.40, C:0.06, G:0.15, T:0.40
Consensus pattern (20 bp):
TTAGAAATAATGGTATTCGA
Found at i:14004859 original size:29 final size:29
Alignment explanation
Indices: 14004817--14004872 Score: 94
Period size: 29 Copynumber: 1.9 Consensus size: 29
14004807 TAAATGACCC
*
14004817 TAAAATATAATTATAAAAATAACTTAAGT
1 TAAAAAATAATTATAAAAATAACTTAAGT
*
14004846 TAAAAAATAATTATATAAATAACTTAA
1 TAAAAAATAATTATAAAAATAACTTAA
14004873 AATGAATAGT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.61, C:0.04, G:0.02, T:0.34
Consensus pattern (29 bp):
TAAAAAATAATTATAAAAATAACTTAAGT
Found at i:14006600 original size:31 final size:31
Alignment explanation
Indices: 14006560--14006618 Score: 82
Period size: 31 Copynumber: 1.9 Consensus size: 31
14006550 GTGTAATTCA
14006560 TATTCGAGTTAAACCGAAAAACTTAATTTTT
1 TATTCGAGTTAAACCGAAAAACTTAATTTTT
* * * *
14006591 TATTTGAGTTGATCCGAATAACTTAATT
1 TATTCGAGTTAAACCGAAAAACTTAATT
14006619 AACTCAAATA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 24 1.00
ACGTcount: A:0.36, C:0.12, G:0.12, T:0.41
Consensus pattern (31 bp):
TATTCGAGTTAAACCGAAAAACTTAATTTTT
Found at i:14006929 original size:19 final size:19
Alignment explanation
Indices: 14006905--14006941 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
14006895 ATCATCAAGC
*
14006905 AATAATTGAGTTAAAAATT
1 AATAATTGAGTCAAAAATT
*
14006924 AATAATTGGGTCAAAAAT
1 AATAATTGAGTCAAAAAT
14006942 CAATGTGAGA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.51, C:0.03, G:0.14, T:0.32
Consensus pattern (19 bp):
AATAATTGAGTCAAAAATT
Found at i:14009445 original size:109 final size:107
Alignment explanation
Indices: 14009176--14009833 Score: 810
Period size: 109 Copynumber: 6.1 Consensus size: 107
14009166 ATTAGTATAC
* * * *
14009176 AAAATACGAGTTTT-AAAAAAAATTTTTGGGTGCTGGCTTGTCAATGTCCGGCACCAAGTACAAA
1 AAAATACGAGTTTTAAAAAAAAAATTTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTACAAA
** * *
14009240 AAAAAATTCAAAA-TTTTTT-AAAAAAA-AATTTGCTCTCTG
66 AAAAAATTCAAAATTTTTTTCAAAAAAATTTTTTACTCTCCG
* * * * *
14009279 AAAATACCAATTTTAAAAAAAAAA--TTGGGTGTTAGCCTGTTAATGGCCGGCACCCAGTACAAA
1 AAAATACGAGTTTTAAAAAAAAAATTTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTACAAA
* *
14009342 AAAAAATTCAAAATTTTTTTCAAAAATTATTTTTTTACTCTCTG
66 AAAAAATTCAAAATTTTTTTCAAAAA--AATTTTTTACTCTCCG
* * * *
14009386 AAAATACTAGTTTTAAAAAAAAAATTTTGGTTGCTGGCCTGTTAATGGCCGGTACCCAGTACAAA
1 AAAATACGAGTTTTAAAAAAAAAATTTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTACAAA
14009451 AAAAAATTCAAAATTTTTTTCAAAAAAAATTTTTTACTCTCCG
66 AAAAAATTCAAAATTTTTTTC-AAAAAAATTTTTTACTCTCCG
* * *
14009494 AAAATACGAGTTTTAAAAAAAAAATTTTTTTGGGTACTAGCCTGTCAATGGCCGACACCCAGTAC
1 AAAATACGAGTTTTAAAAAAAAAA---TTTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTAC
* *
14009559 AAAAAAAAATTCAAAATTTTTTTCAAAAAGAAATTTTTTACTCCCCA
63 AAAAAAAAATTCAAAATTTTTTTC-AAAA-AAATTTTTTACTCTCCG
* * *
14009606 AAAATACGAGTTTTAAAAAAAAAAATTCGGGTGCTGGCCTGTCAATGTCCGGCACCCAGTACAAA
1 AAAATACGAGTTTTAAAAAAAAAATTTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTACAAA
* *
14009671 AAAAAATTTAAAATTTGTTTCAAAAAAATTTTTTTACTCTCCG
66 AAAAAATTCAAAATTTTTTTCAAAAAAA-TTTTTTACTCTCCG
* ** * *
14009714 AAAATACGAATTTTTTTAAAAAAAATTTTTGGTGCTGGCCTGTCAATTGCCGGCACCCAGTACAA
1 AAAATACG-AGTTTTAAAAAAAAAATTTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTACAA
* * * * * *
14009779 AAAGAAATT--GATTTTTTTTTAAAAACATTTTTTGCTCTCCG
65 AAAAAAATTCAAAATTTTTTTCAAAAAAATTTTTTACTCTCCG
14009820 AAAATACGAGTTTT
1 AAAATACGAGTTTT
14009834 TTTTTTAAAA
Statistics
Matches: 484, Mismatches: 56, Indels: 28
0.85 0.10 0.05
Matches are distributed among these distances:
102 46 0.10
103 18 0.04
104 13 0.03
105 5 0.01
106 22 0.05
107 48 0.10
108 61 0.13
109 166 0.34
110 5 0.01
111 61 0.13
112 39 0.08
ACGTcount: A:0.39, C:0.15, G:0.13, T:0.33
Consensus pattern (107 bp):
AAAATACGAGTTTTAAAAAAAAAATTTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTACAAA
AAAAAATTCAAAATTTTTTTCAAAAAAATTTTTTACTCTCCG
Found at i:14009581 original size:220 final size:216
Alignment explanation
Indices: 14009176--14009833 Score: 852
Period size: 220 Copynumber: 3.1 Consensus size: 216
14009166 ATTAGTATAC
* * *
14009176 AAAATACGAGTTTT-AAAAAAAATTTTTGGGTGCTGGCTTGTCAATGTCCGGCACCAAGTACAAA
1 AAAATACGAGTTTTAAAAAAAAAATTTTGGGTGCTGGCCTGTCAATGTCCGGCACCCAGTACAAA
* * * *
14009240 AAAAAATTCAAAA-TTTTTT-AAAAAAAA--ATTTGCTCTCTGAAAATACCAATTTTAAAAAAAA
66 AAAAAATTCAAAATTTTTTTCAAAAAAAATTTTTTACTCTCCGAAAATACGAATTTTAAAAAAAA
* *
14009301 AA---TTGGGTGTTAGCCTGTTAATGGCCGGCACCCAGTACAAAAAAAAATTCAAAATTTTTTTC
131 AATTTTTGGGTGCTAGCCTGTCAATGGCCGGCACCCAGTACAAAAAAAAATTCAAAATTTTTTTC
* *
14009363 AAAAATTATTTTTTTACTCTCTG
196 AAAAA--AATTTTTTACTCTCCG
* * * * *
14009386 AAAATACTAGTTTTAAAAAAAAAATTTTGGTTGCTGGCCTGTTAATGGCCGGTACCCAGTACAAA
1 AAAATACGAGTTTTAAAAAAAAAATTTTGGGTGCTGGCCTGTCAATGTCCGGCACCCAGTACAAA
*
14009451 AAAAAATTCAAAATTTTTTTCAAAAAAAATTTTTTACTCTCCGAAAATACGAGTTTTAAAAAAAA
66 AAAAAATTCAAAATTTTTTTCAAAAAAAATTTTTTACTCTCCGAAAATACGAATTTTAAAAAAAA
* *
14009516 AATTTTTTTGGGTACTAGCCTGTCAATGGCCGACACCCAGTACAAAAAAAAATTCAAAATTTTTT
131 AA--TTTTTGGGTGCTAGCCTGTCAATGGCCGGCACCCAGTACAAAAAAAAATTCAAAATTTTTT
* *
14009581 TCAAAAAGAAATTTTTTACTCCCCA
194 TC-AAAA-AAATTTTTTACTCTCCG
* *
14009606 AAAATACGAGTTTTAAAAAAAAAAATTCGGGTGCTGGCCTGTCAATGTCCGGCACCCAGTACAAA
1 AAAATACGAGTTTTAAAAAAAAAATTTTGGGTGCTGGCCTGTCAATGTCCGGCACCCAGTACAAA
* * * **
14009671 AAAAAATTTAAAATTTGTTTCAAAAAAATTTTTTTACTCTCCGAAAATACGAATTTTTTTAAAAA
66 AAAAAATTCAAAATTTTTTTCAAAAAAAATTTTTTACTCTCCGAAAATACGAA-TTTTAAAAAAA
* * * * *
14009736 AAATTTTT-GGTGCTGGCCTGTCAATTGCCGGCACCCAGTACAAAAAGAAATT--GATTTTTTTT
130 AAATTTTTGGGTGCTAGCCTGTCAATGGCCGGCACCCAGTACAAAAAAAAATTCAAAATTTTTTT
* * *
14009798 TAAAAACATTTTTTGCTCTCCG
195 CAAAAAAATTTTTTACTCTCCG
14009820 AAAATACGAGTTTT
1 AAAATACGAGTTTT
14009834 TTTTTTAAAA
Statistics
Matches: 389, Mismatches: 46, Indels: 22
0.85 0.10 0.05
Matches are distributed among these distances:
210 13 0.03
211 56 0.14
212 6 0.02
213 8 0.02
214 27 0.07
215 35 0.09
216 8 0.02
218 39 0.10
219 5 0.01
220 175 0.45
221 16 0.04
222 1 0.00
ACGTcount: A:0.39, C:0.15, G:0.13, T:0.33
Consensus pattern (216 bp):
AAAATACGAGTTTTAAAAAAAAAATTTTGGGTGCTGGCCTGTCAATGTCCGGCACCCAGTACAAA
AAAAAATTCAAAATTTTTTTCAAAAAAAATTTTTTACTCTCCGAAAATACGAATTTTAAAAAAAA
AATTTTTGGGTGCTAGCCTGTCAATGGCCGGCACCCAGTACAAAAAAAAATTCAAAATTTTTTTC
AAAAAAATTTTTTACTCTCCG
Found at i:14016178 original size:14 final size:14
Alignment explanation
Indices: 14016159--14016188 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
14016149 TTTGTTGACT
14016159 GTTTGATCATTTTA
1 GTTTGATCATTTTA
14016173 GTTTGATCATTTTA
1 GTTTGATCATTTTA
14016187 GT
1 GT
14016189 AATTTATCAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.20, C:0.07, G:0.17, T:0.57
Consensus pattern (14 bp):
GTTTGATCATTTTA
Found at i:14020387 original size:9 final size:9
Alignment explanation
Indices: 14020373--14020404 Score: 55
Period size: 9 Copynumber: 3.6 Consensus size: 9
14020363 TATCAAGACA
14020373 ATAATAATG
1 ATAATAATG
14020382 ATAATAATG
1 ATAATAATG
*
14020391 ATAATAATA
1 ATAATAATG
14020400 ATAAT
1 ATAAT
14020405 TTAATAGAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.59, C:0.00, G:0.06, T:0.34
Consensus pattern (9 bp):
ATAATAATG
Found at i:14029371 original size:21 final size:20
Alignment explanation
Indices: 14029332--14029371 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
14029322 ATAAACTTAC
* *
14029332 AATATTAAATACTTTAATAA
1 AATAATAAATACATTAATAA
14029352 AATAATAAATTACATTAATA
1 AATAATAAA-TACATTAATA
14029372 TTTAATATTG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.57, C:0.05, G:0.00, T:0.38
Consensus pattern (20 bp):
AATAATAAATACATTAATAA
Found at i:14029619 original size:19 final size:19
Alignment explanation
Indices: 14029593--14029645 Score: 70
Period size: 19 Copynumber: 2.8 Consensus size: 19
14029583 TTGTTGAATA
*
14029593 CAAATTATTTTCTATTTAT
1 CAAATTATTTTCTATTGAT
* *
14029612 CAAGTTATTTTCAATTGAT
1 CAAATTATTTTCTATTGAT
*
14029631 CAAATTGTTTTCTAT
1 CAAATTATTTTCTAT
14029646 AAAATAAATA
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
19 28 1.00
ACGTcount: A:0.30, C:0.11, G:0.06, T:0.53
Consensus pattern (19 bp):
CAAATTATTTTCTATTGAT
Found at i:14030803 original size:13 final size:14
Alignment explanation
Indices: 14030772--14030813 Score: 50
Period size: 13 Copynumber: 2.9 Consensus size: 14
14030762 TATGTGAAGA
14030772 TATTATTTAAAATTAT
1 TATT-TTTAAAA-TAT
14030788 TATTTTTAAAAT-T
1 TATTTTTAAAATAT
*
14030801 TATTGTTAAAATA
1 TATTTTTAAAATA
14030814 AAATTGAAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
13 12 0.50
14 1 0.04
15 7 0.29
16 4 0.17
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (14 bp):
TATTTTTAAAATAT
Found at i:14030869 original size:25 final size:24
Alignment explanation
Indices: 14030824--14030871 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 24
14030814 AAATTGAAAT
14030824 ATTAATTAATTTATTAAAATAATAA
1 ATTAATTAATTTATT-AAATAATAA
14030849 ATTATATTAATTATATT-AATAAT
1 ATTA-ATTAATT-TATTAAATAAT
14030872 TTGTTATATA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
25 10 0.48
26 7 0.33
27 4 0.19
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (24 bp):
ATTAATTAATTTATTAAATAATAA
Found at i:14030898 original size:38 final size:37
Alignment explanation
Indices: 14030851--14030952 Score: 95
Period size: 38 Copynumber: 2.7 Consensus size: 37
14030841 AATAATAAAT
* **
14030851 TATATTAATTATATTAATAATTTGTTATATATTG-AAA
1 TATAATAATTATATTAATAATTTAATA-ATATTGAAAA
14030888 TATAAATAATTAAATATGT-AT-ATTTAATAATATTGAAAA
1 TAT-AATAATT--ATAT-TAATAATTTAATAATATTGAAAA
*
14030927 TATAATATTTATATTAAT-ATTTAATA
1 TATAATAATTATATTAATAATTTAATA
14030953 TTTTTAAAAA
Statistics
Matches: 55, Mismatches: 4, Indels: 13
0.76 0.06 0.18
Matches are distributed among these distances:
35 1 0.02
36 14 0.25
37 3 0.05
38 18 0.33
39 12 0.22
40 6 0.11
41 1 0.02
ACGTcount: A:0.48, C:0.00, G:0.04, T:0.48
Consensus pattern (37 bp):
TATAATAATTATATTAATAATTTAATAATATTGAAAA
Found at i:14030973 original size:5 final size:6
Alignment explanation
Indices: 14030957--14030981 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
14030947 TTAATATTTT
14030957 TAAAAA TAAAAA TAAAAA TAAAAA T
1 TAAAAA TAAAAA TAAAAA TAAAAA T
14030982 TATTTATAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (6 bp):
TAAAAA
Found at i:14031911 original size:14 final size:13
Alignment explanation
Indices: 14031882--14031915 Score: 50
Period size: 14 Copynumber: 2.5 Consensus size: 13
14031872 TTACGATAGG
*
14031882 AATTTTATATGAA
1 AATTTTATAAGAA
14031895 AATTTTGATAAGAA
1 AATTTT-ATAAGAA
14031909 AATTTTA
1 AATTTTA
14031916 CTGATTATGT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
13 7 0.37
14 12 0.63
ACGTcount: A:0.47, C:0.00, G:0.09, T:0.44
Consensus pattern (13 bp):
AATTTTATAAGAA
Found at i:14033678 original size:40 final size:40
Alignment explanation
Indices: 14033570--14033819 Score: 376
Period size: 40 Copynumber: 6.2 Consensus size: 40
14033560 CGGGATTTAA
* * * * *
14033570 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
14033610 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
*
14033650 CCGGATATATCAACTCGCACGAATGCCTTCAGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
14033690 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
14033730 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
14033770 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
14033810 CCGGATATAT
1 CCGGATATAT
14033820 TTCCAATGTT
Statistics
Matches: 191, Mismatches: 17, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
39 1 0.01
40 190 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:14041895 original size:40 final size:40
Alignment explanation
Indices: 14041745--14041990 Score: 349
Period size: 40 Copynumber: 6.2 Consensus size: 40
14041735 CGGGATTTAA
* * * * *
14041745 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
14041785 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
14041825 CCGGATATATCAACT----CGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
14041861 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
14041901 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
14041941 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
14041981 CCGGATATAT
1 CCGGATATAT
14041991 TTCCAATGTT
Statistics
Matches: 186, Mismatches: 14, Indels: 12
0.88 0.07 0.06
Matches are distributed among these distances:
36 34 0.18
39 1 0.01
40 151 0.81
ACGTcount: A:0.22, C:0.28, G:0.24, T:0.26
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:14041949 original size:116 final size:117
Alignment explanation
Indices: 14041745--14041990 Score: 343
Period size: 116 Copynumber: 2.1 Consensus size: 117
14041735 CGGGATTTAA
* * * * * * *
14041745 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAACCCGGATTTGGTGACTTGCACAAAGG
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCATAACCCGGATATGATAACTCGCACAAAGG
14041810 CCTTCGGGTCTTAGCCCGGATATATCAACT-CGAATGCCTTCGGGTCTTAGC
66 CCTTCGGGTCTTAGCCCGGATATATCAACTCCGAATGCCTTCGGGTCTTAGC
* * * *
14041861 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGCCCGGATAT-ATCAACTCGCACGAAT
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCATAACCCGGATATGAT-AACTCGCACAAAG
14041925 GCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
65 GCCTTCGGGTCTTAGCCCGGATATATCAACT--C-CGAATGCCTTCGGGTCTTAGC
14041981 CCGGATATAT
1 CCGGATATAT
14041991 TTCCAATGTT
Statistics
Matches: 114, Mismatches: 11, Indels: 6
0.87 0.08 0.05
Matches are distributed among these distances:
115 1 0.01
116 82 0.72
120 31 0.27
ACGTcount: A:0.22, C:0.28, G:0.24, T:0.26
Consensus pattern (117 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCATAACCCGGATATGATAACTCGCACAAAGG
CCTTCGGGTCTTAGCCCGGATATATCAACTCCGAATGCCTTCGGGTCTTAGC
Found at i:14044888 original size:75 final size:75
Alignment explanation
Indices: 14044763--14044909 Score: 258
Period size: 75 Copynumber: 2.0 Consensus size: 75
14044753 TTGAACTCTC
* * *
14044763 TGTTACCTCATCCAAAGCTCTCTGATATTATCTCTTTGGAGATATTTGAAAGGCTCTATGAGCTT
1 TGTTACCTCATCCAAAGCTCCCTGATATTATCTCTTTAGAGATATCTGAAAGGCTCTATGAGCTT
14044828 CCAGAGTCTT
66 CCAGAGTCTT
*
14044838 TGTTACCTTATCCAAAGCTCCCTGATATTATCTCTTTAGAGATATCTGAAAGGCTCTATGAGCTT
1 TGTTACCTCATCCAAAGCTCCCTGATATTATCTCTTTAGAGATATCTGAAAGGCTCTATGAGCTT
14044903 CCAGAGT
66 CCAGAGT
14044910 AAAAACTCTT
Statistics
Matches: 68, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
75 68 1.00
ACGTcount: A:0.25, C:0.22, G:0.17, T:0.36
Consensus pattern (75 bp):
TGTTACCTCATCCAAAGCTCCCTGATATTATCTCTTTAGAGATATCTGAAAGGCTCTATGAGCTT
CCAGAGTCTT
Found at i:14047631 original size:82 final size:82
Alignment explanation
Indices: 14047494--14047659 Score: 323
Period size: 82 Copynumber: 2.0 Consensus size: 82
14047484 AAAACATTAT
14047494 GCATCATTATACTTATAGGAACTTATTAAACATACCTCTAACACTTACCCATGTTTGTTTACTGA
1 GCATCATTATACTTATAGGAACTTATTAAACATACCTCTAACACTTACCCATGTTTGTTTACTGA
14047559 AACTTATGCTTTTCTGG
66 AACTTATGCTTTTCTGG
*
14047576 GCATCATTATACTTATAGGAACTTATTTAACATACCTCTAACACTTACCCATGTTTGTTTACTGA
1 GCATCATTATACTTATAGGAACTTATTAAACATACCTCTAACACTTACCCATGTTTGTTTACTGA
14047641 AACTTATGCTTTTCTGG
66 AACTTATGCTTTTCTGG
14047658 GC
1 GC
14047660 TTACATAAAG
Statistics
Matches: 83, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
82 83 1.00
ACGTcount: A:0.28, C:0.21, G:0.11, T:0.39
Consensus pattern (82 bp):
GCATCATTATACTTATAGGAACTTATTAAACATACCTCTAACACTTACCCATGTTTGTTTACTGA
AACTTATGCTTTTCTGG
Found at i:14050478 original size:19 final size:19
Alignment explanation
Indices: 14050454--14050491 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
14050444 AAAAGCTTAG
14050454 ATTGTGCTATAACTATTAT
1 ATTGTGCTATAACTATTAT
14050473 ATTGTGCTATAACTATTAT
1 ATTGTGCTATAACTATTAT
14050492 TATTTGTTAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.32, C:0.11, G:0.11, T:0.47
Consensus pattern (19 bp):
ATTGTGCTATAACTATTAT
Done.