Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr02 99090824
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 99090824
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 317 characters in sequence are not A, C, G, or T
File 51 of 318
Found at i:14414601 original size:63 final size:64
Alignment explanation
Indices: 14414494--14414623 Score: 192
Period size: 63 Copynumber: 2.0 Consensus size: 64
14414484 ATAGAAATGG
* * *
14414494 TGAAAATAAAGAAATGAGAAACATTTGGAAATGATTATGGTTTTCTCCAAAATGAAAATGAAAA
1 TGAAAATAAAGAAATGAGAAACATTTGAAAATGAATATGATTTTCTCCAAAATGAAAATGAAAA
* *
14414558 TGAAAATAGAGAAAT-A-AAATCATTTGAAAATGAATGTGATTTTCTCCAAAATGAAAATGAAAA
1 TGAAAATAAAGAAATGAGAAA-CATTTGAAAATGAATATGATTTTCTCCAAAATGAAAATGAAAA
14414621 TGA
1 TGA
14414624 CTTGGAAATG
Statistics
Matches: 60, Mismatches: 5, Indels: 3
0.88 0.07 0.04
Matches are distributed among these distances:
62 3 0.05
63 43 0.72
64 14 0.23
ACGTcount: A:0.51, C:0.06, G:0.16, T:0.27
Consensus pattern (64 bp):
TGAAAATAAAGAAATGAGAAACATTTGAAAATGAATATGATTTTCTCCAAAATGAAAATGAAAA
Found at i:14427649 original size:27 final size:27
Alignment explanation
Indices: 14427601--14427873 Score: 190
Period size: 27 Copynumber: 9.8 Consensus size: 27
14427591 ATTACCAAAG
*
14427601 TACCC-CGATTTACATAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
14427627 TACCCTCGATTTATAGAAGTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* * *
14427654 TACCCTTGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
14427681 TACCCTTGATTTACAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
14427708 TACCC-CGATTTACATAATTACCATTT
1 TACCCTCGATTTACAGAATTACCGTTT
* * * *
14427734 TACCCCCGTTTTACCCTCGACTTACAGAATTACTGTTT
1 TACCCTCG-ATT----T--AC--AG--AATTACCGTTT
* **
14427772 TACCCTCGATTTACAAAATTATTGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* * **
14427799 TACCGTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACCGTTT
* **
14427826 TACCCTTGATTTACAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACCGTTT
** *
14427853 TACCCTTAATTTACAAAATTA
1 TACCCTCGATTTACAGAATTA
14427874 TAGAAATACC
Statistics
Matches: 205, Mismatches: 29, Indels: 25
0.79 0.11 0.10
Matches are distributed among these distances:
26 29 0.14
27 148 0.72
28 2 0.01
29 1 0.00
31 2 0.01
32 1 0.00
33 1 0.00
34 2 0.01
36 1 0.00
37 2 0.01
38 16 0.08
ACGTcount: A:0.29, C:0.22, G:0.08, T:0.41
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACCGTTT
Found at i:14427681 original size:54 final size:54
Alignment explanation
Indices: 14427601--14427873 Score: 235
Period size: 54 Copynumber: 4.9 Consensus size: 54
14427591 ATTACCAAAG
* * * * *
14427601 TACCC-CGATTTACATAATTACCGTTTTACCCTCGATTTATAGAAGTACCGTTT
1 TACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTACAGAATTACCATTT
* * *
14427654 TACCCTTGATTTATAGAATTACTGTTTTACCCTTGATTTACAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTACAGAATTACCATTT
* * **
14427708 TACCC-CGATTTACATAATTACCATTTTACCCCCGTTTTACCCTCGACTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTA-C----T------GTTTTACCCTCGATTTACAGAATTACCATTT
* * * * *
14427772 TACCCTCGATTTACAAAATTATTGTTTTACCGTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTACAGAATTACCATTT
* * ** *
14427826 TACCCTTGATTTACAGAATTACTATTTTACCCTTAATTTACAAAATTA
1 TACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTACAGAATTA
14427874 TAGAAATACC
Statistics
Matches: 177, Mismatches: 30, Indels: 25
0.76 0.13 0.11
Matches are distributed among these distances:
53 17 0.10
54 112 0.63
58 1 0.01
60 1 0.01
64 32 0.18
65 14 0.08
ACGTcount: A:0.29, C:0.22, G:0.08, T:0.41
Consensus pattern (54 bp):
TACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTACAGAATTACCATTT
Found at i:14427765 original size:38 final size:37
Alignment explanation
Indices: 14427705--14427785 Score: 99
Period size: 38 Copynumber: 2.2 Consensus size: 37
14427695 AGAATTACCA
* *
14427705 TTTTACCCCGATTTACATAATTACCATTTTACCCCCG
1 TTTTACCCCGACTTACAGAATTACCATTTTACCCCCG
** *
14427742 TTTTACCCTCGACTTACAGAATTACTGTTTTACCCTCG
1 TTTTACCC-CGACTTACAGAATTACCATTTTACCCCCG
*
14427780 ATTTAC
1 TTTTAC
14427786 AAAATTATTG
Statistics
Matches: 37, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
37 8 0.22
38 29 0.78
ACGTcount: A:0.23, C:0.30, G:0.07, T:0.40
Consensus pattern (37 bp):
TTTTACCCCGACTTACAGAATTACCATTTTACCCCCG
Found at i:14427783 original size:91 final size:92
Alignment explanation
Indices: 14427648--14427830 Score: 251
Period size: 91 Copynumber: 2.0 Consensus size: 92
14427638 TATAGAAGTA
* * * * *
14427648 CCGTTTTACCCTTGATTTATAGAATTACTGTTTTACCCTTGATTTACAGAATTACCATTTTACC-
1 CCGTTTTACCCTCGACTTACAGAATTACTGTTTTACCCTCGATTTACAAAATTACCATTTTACCG
*
14427712 CCGATTTACATAATTACCATTTTACCC
66 CCGATTTACAGAATTACCATTTTACCC
***
14427739 CCGTTTTACCCTCGACTTACAGAATTACTGTTTTACCCTCGATTTACAAAATTATTGTTTTACCG
1 CCGTTTTACCCTCGACTTACAGAATTACTGTTTTACCCTCGATTTACAAAATTACCATTTTACCG
* * *
14427804 TCGATTTATAGAATTACTATTTTACCC
66 CCGATTTACAGAATTACCATTTTACCC
14427831 TTGATTTACA
Statistics
Matches: 79, Mismatches: 12, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
91 56 0.71
92 23 0.29
ACGTcount: A:0.26, C:0.23, G:0.09, T:0.42
Consensus pattern (92 bp):
CCGTTTTACCCTCGACTTACAGAATTACTGTTTTACCCTCGATTTACAAAATTACCATTTTACCG
CCGATTTACAGAATTACCATTTTACCC
Found at i:14427883 original size:27 final size:28
Alignment explanation
Indices: 14427853--14428075 Score: 128
Period size: 27 Copynumber: 8.2 Consensus size: 28
14427843 ATTACTATTT
*
14427853 TACCCTTAATTTACAAAATTA-TAGAAA
1 TACCCTTAATTTACAAAATTACCAGAAA
* **
14427880 TACCCTCAATTTGTAAAATTACCA-AAA
1 TACCCTTAATTTACAAAATTACCAGAAA
* * **
14427907 TACCCCTAGTTTGTAAAATTACCA-AAA
1 TACCCTTAATTTACAAAATTACCAGAAA
* ***
14427934 TACCAC-TAGTTTGTGAAATTACC-GAAA
1 TACC-CTTAATTTACAAAATTACCAGAAA
* *
14427961 TACCCTCAATTT-TAAAATTACCA-AAA
1 TACCCTTAATTTACAAAATTACCAGAAA
* *
14427987 TACCC-TGATTTACAAAGTTA-CAGAAA
1 TACCCTTAATTTACAAAATTACCAGAAA
* *
14428013 TACCCTTGACTTT-CTAAAAATTA-TAGAAA
1 TACCCTT-AATTTAC--AAAATTACCAGAAA
* ** *
14428042 TACCATTGGTTTACAAAATTA-CTGAAA
1 TACCCTTAATTTACAAAATTACCAGAAA
14428069 TACCCTT
1 TACCCTT
14428076 GGTTTGTAGA
Statistics
Matches: 159, Mismatches: 25, Indels: 24
0.76 0.12 0.12
Matches are distributed among these distances:
25 6 0.04
26 32 0.20
27 95 0.60
28 8 0.05
29 18 0.11
ACGTcount: A:0.42, C:0.20, G:0.07, T:0.31
Consensus pattern (28 bp):
TACCCTTAATTTACAAAATTACCAGAAA
Found at i:14427900 original size:81 final size:81
Alignment explanation
Indices: 14427742--14427901 Score: 203
Period size: 81 Copynumber: 2.0 Consensus size: 81
14427732 TTTACCCCCG
* * * *** * *
14427742 TTTTACCCTCGACTTACAGAATTACTGTTTTACCCTCGATTTACAAAATTATTGTTTTACCGTCG
1 TTTTACCCTCGACTTACAGAATTACTATTTTACCCTCAATTTACAAAATTATAGAAATACCCTCA
*
14427807 ATTTATAGAATTACTA
66 ATTTATAAAATTACTA
* * *
14427823 TTTTACCCTTGATTTACAGAATTACTATTTTACCCTTAATTTACAAAATTATAGAAATACCCTCA
1 TTTTACCCTCGACTTACAGAATTACTATTTTACCCTCAATTTACAAAATTATAGAAATACCCTCA
*
14427888 ATTTGTAAAATTAC
66 ATTTATAAAATTAC
14427902 CAAAATACCC
Statistics
Matches: 66, Mismatches: 13, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
81 66 1.00
ACGTcount: A:0.33, C:0.19, G:0.07, T:0.41
Consensus pattern (81 bp):
TTTTACCCTCGACTTACAGAATTACTATTTTACCCTCAATTTACAAAATTATAGAAATACCCTCA
ATTTATAAAATTACTA
Found at i:14427911 original size:54 final size:52
Alignment explanation
Indices: 14427853--14428019 Score: 149
Period size: 54 Copynumber: 3.1 Consensus size: 52
14427843 ATTACTATTT
*
14427853 TACCCTTAATTTACAAAATTA-TAGAAATACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTTAATTT-CAAAATTACCA-AAATACCCT-AATTTGTAAAATTACCAAAA
* * * * * *
14427907 TACCCCTAGTTTGTAAAATTACCAAAATACCACTAGTTTGTGAAATTACCGAAA
1 TACCCTTAATTT-CAAAATTACCAAAATACC-CTAATTTGTAAAATTACCAAAA
* * * ** *
14427961 TACCCTCAATTTTAAAATTACCAAAATACCCTGATTTACAAAGTTA-CAGAAA
1 TACCCTTAATTTCAAAATTACCAAAATACCCTAATTTGTAAAATTACCA-AAA
14428013 TACCCTT
1 TACCCTT
14428020 GACTTTCTAA
Statistics
Matches: 91, Mismatches: 19, Indels: 8
0.77 0.16 0.07
Matches are distributed among these distances:
51 1 0.01
52 19 0.21
53 18 0.20
54 50 0.55
55 3 0.03
ACGTcount: A:0.42, C:0.21, G:0.07, T:0.31
Consensus pattern (52 bp):
TACCCTTAATTTCAAAATTACCAAAATACCCTAATTTGTAAAATTACCAAAA
Found at i:14427911 original size:81 final size:80
Alignment explanation
Indices: 14427745--14428000 Score: 187
Period size: 81 Copynumber: 3.2 Consensus size: 80
14427735 ACCCCCGTTT
* * * ** * *** * *
14427745 TACCCTCGACTTACAGAATTACTGTTTTACCCTCGATTTACAAAATTATTGTTTTACCGTCGATT
1 TACCCTTGATTTACAGAATTACTATTTTACCCTTAATTTACAAAATTATAGAAATACCCTCAATT
* * ***
14427810 TATAGAATTACTATTT
66 T-TAAAATTACCAAAA
14427826 TACCCTTGATTTACAGAATTACTATTTTACCCTTAATTTACAAAATTATAGAAATACCCTCAATT
1 TACCCTTGATTTACAGAATTACTATTTTACCCTTAATTTACAAAATTATAGAAATACCCTCAATT
14427891 TGTAAAATTACCAAAA
66 T-TAAAATTACCAAAA
* * * *** * *** **
14427907 TACCCCTAGTTTGTA-A-AATTACCAAAATACCAC-TAGTTTGTGAAATTACCGAAATACCCTCA
1 TA-CCCTTGATT-TACAGAATTACTATTTTACC-CTTAATTTACAAAATTATAGAAATACCCTCA
14427969 ATTTTAAAATTACCAAAA
63 ATTTTAAAATTACCAAAA
14427987 TACCC-TGATTTACA
1 TACCCTTGATTTACA
14428001 AAGTTACAGA
Statistics
Matches: 140, Mismatches: 31, Indels: 11
0.77 0.17 0.06
Matches are distributed among these distances:
77 2 0.01
78 4 0.03
79 3 0.02
80 16 0.11
81 104 0.74
82 9 0.06
83 2 0.01
ACGTcount: A:0.36, C:0.20, G:0.07, T:0.36
Consensus pattern (80 bp):
TACCCTTGATTTACAGAATTACTATTTTACCCTTAATTTACAAAATTATAGAAATACCCTCAATT
TTAAAATTACCAAAA
Found at i:14428007 original size:26 final size:26
Alignment explanation
Indices: 14427877--14427992 Score: 137
Period size: 27 Copynumber: 4.3 Consensus size: 26
14427867 AAAATTATAG
14427877 AAATACCCTCAATTTGTAAAATTACCA
1 AAATACCCTCAATTT-TAAAATTACCA
*
14427904 AAATACCC-CTAGTTTGTAAAATTACCA
1 AAATACCCTC-AATTT-TAAAATTACCA
* * *
14427931 AAATACCACT-AGTTTGTGAAATTACCG
1 AAATACC-CTCAATTT-TAAAATTACCA
14427958 AAATACCCTCAATTTTAAAATTACCA
1 AAATACCCTCAATTTTAAAATTACCA
14427984 AAATACCCT
1 AAATACCCT
14427993 GATTTACAAA
Statistics
Matches: 79, Mismatches: 6, Indels: 9
0.84 0.06 0.10
Matches are distributed among these distances:
26 21 0.27
27 57 0.72
28 1 0.01
ACGTcount: A:0.42, C:0.22, G:0.06, T:0.29
Consensus pattern (26 bp):
AAATACCCTCAATTTTAAAATTACCA
Found at i:14428182 original size:26 final size:26
Alignment explanation
Indices: 14428133--14428224 Score: 130
Period size: 27 Copynumber: 3.5 Consensus size: 26
14428123 TACCCCTATT
14428133 AGGTAAAGTGACCGTAAAGCCCCTGTA
1 AGGTAAAGTGACCGTAAAG-CCCTGTA
*
14428160 GGGTAAAGTGACCGTAAAGCCCTGTA
1 AGGTAAAGTGACCGTAAAGCCCTGTA
*
14428186 AGGTAAAGTGACCGTAATACCCCTGTA
1 AGGTAAAGTGACCGTAA-AGCCCTGTA
* *
14428213 TGGTAAAATGAC
1 AGGTAAAGTGAC
14428225 GAATATGCCC
Statistics
Matches: 59, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
26 23 0.39
27 36 0.61
ACGTcount: A:0.34, C:0.20, G:0.26, T:0.21
Consensus pattern (26 bp):
AGGTAAAGTGACCGTAAAGCCCTGTA
Found at i:14429403 original size:25 final size:25
Alignment explanation
Indices: 14429374--14429421 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
14429364 TTATAACATG
* * *
14429374 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
14429399 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
14429422 GTTTATATAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:14429472 original size:9 final size:9
Alignment explanation
Indices: 14429460--14429516 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
14429450 TTTGATAAAC
14429460 ATGATATGT
1 ATGATATGT
*
14429469 ATGATATGCAC
1 ATGATATG--T
*
14429480 ATGACATGT
1 ATGATATGT
*
14429489 ATGATATGCAC
1 ATGATATG--T
14429500 ATGATATGT
1 ATGATATGT
14429509 ATGATATG
1 ATGATATG
14429517 CACACGAGAT
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:14429483 original size:20 final size:20
Alignment explanation
Indices: 14429458--14429520 Score: 117
Period size: 20 Copynumber: 3.1 Consensus size: 20
14429448 ATTTTGATAA
14429458 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
14429478 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
14429498 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
14429518 ACA
1 ACA
14429521 CGAGATGTTC
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.37, C:0.13, G:0.19, T:0.32
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:14429702 original size:25 final size:24
Alignment explanation
Indices: 14429574--14429716 Score: 211
Period size: 24 Copynumber: 6.0 Consensus size: 24
14429564 GAGGAAGTGC
14429574 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
14429598 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
14429622 AAAAGGGCTTACG-CCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
14429645 -AAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
14429668 AAAAAGGGCTTTTGCCCCAGTTATT
1 -AAAAGGGCTTATGCCCCAGTTATT
*
14429693 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
14429717 ATGATAAAGC
Statistics
Matches: 109, Mismatches: 5, Indels: 9
0.89 0.04 0.07
Matches are distributed among these distances:
22 11 0.10
23 20 0.18
24 45 0.41
25 33 0.30
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.28
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:14429959 original size:30 final size:30
Alignment explanation
Indices: 14429906--14429967 Score: 90
Period size: 31 Copynumber: 2.1 Consensus size: 30
14429896 CGTTTACAGT
14429906 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATG-AATATGA
**
14429937 AAAGGCTTCGG-CCAGTGTTATGAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAATATGA
14429966 AA
1 AA
14429968 TATGAAAAGG
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
29 9 0.31
30 9 0.31
31 11 0.38
ACGTcount: A:0.37, C:0.15, G:0.24, T:0.24
Consensus pattern (30 bp):
AAAGGCTTCGGCCCAGTAATATGAATATGA
Found at i:14432836 original size:27 final size:27
Alignment explanation
Indices: 14432784--14432931 Score: 163
Period size: 27 Copynumber: 5.5 Consensus size: 27
14432774 ATTACCAAAG
*
14432784 TACCC-CGATTTACATAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* * *
14432810 TACCCTCGATTTATAGAAGTACTGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* * *
14432837 TACCCTTGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
14432864 TACCCTTGATTTACAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACCGTTT
* * *
14432891 TACCCCCGATTTACATAATTACCATTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
14432918 TACCCCCGTTTTAC
1 TACCCTCGATTTAC
14432932 CCTCGACTTA
Statistics
Matches: 108, Mismatches: 13, Indels: 1
0.89 0.11 0.01
Matches are distributed among these distances:
26 5 0.05
27 103 0.95
ACGTcount: A:0.26, C:0.24, G:0.09, T:0.41
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACCGTTT
Found at i:14432864 original size:54 final size:54
Alignment explanation
Indices: 14432784--14433056 Score: 228
Period size: 54 Copynumber: 4.9 Consensus size: 54
14432774 ATTACCAAAG
* * * * * *
14432784 TACCC-CGATTTACATAATTACCGTTTTACCCTCGATTTATAGAAGTACTGTTT
1 TACCCTCGATTTATAGAATTACTGTTTTACCCTCGATTTACAGAATTACTATTT
* * *
14432837 TACCCTTGATTTATAGAATTACTGTTTTACCCTTGATTTACAGAATTACCATTT
1 TACCCTCGATTTATAGAATTACTGTTTTACCCTCGATTTACAGAATTACTATTT
* * * *
14432891 TACCCCCGATTTACATAATTACCATTTTACCCCCGTTTTACCCTCGACTTACAGAATTACTATTT
1 TACCCTCGATTT--AT-A-GA--A--TTA---CTGTTTTACCCTCGATTTACAGAATTACTATTT
* * * * *
14432956 TACTCTCGATTTACA-AATTATTGTTTTACCGTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTATAGAATTACTGTTTTACCCTCGATTTACAGAATTACTATTT
* * * *
14433009 TACCATTGATTTATAGAATTACTATTTTACCCTCGATTTA-AAAATTAC
1 TACCCTCGATTTATAGAATTACTGTTTTACCCTCGATTTACAGAATTAC
14433057 AGAAATACCC
Statistics
Matches: 175, Mismatches: 32, Indels: 26
0.75 0.14 0.11
Matches are distributed among these distances:
53 51 0.29
54 70 0.40
56 5 0.03
57 1 0.01
58 2 0.01
60 2 0.01
62 4 0.02
63 1 0.01
65 39 0.22
ACGTcount: A:0.29, C:0.21, G:0.08, T:0.42
Consensus pattern (54 bp):
TACCCTCGATTTATAGAATTACTGTTTTACCCTCGATTTACAGAATTACTATTT
Found at i:14432956 original size:27 final size:27
Alignment explanation
Indices: 14432926--14433056 Score: 158
Period size: 27 Copynumber: 4.9 Consensus size: 27
14432916 TTTACCCCCG
*
14432926 TTTTACCCTCGACTTACAGAATTACTA
1 TTTTACCCTCGATTTACAGAATTACTA
* * *
14432953 TTTTACTCTCGATTTACA-AATTATTG
1 TTTTACCCTCGATTTACAGAATTACTA
* *
14432979 TTTTACCGTCGATTTATAGAATTACTA
1 TTTTACCCTCGATTTACAGAATTACTA
* * *
14433006 TTTTACCATTGATTTATAGAATTACTA
1 TTTTACCCTCGATTTACAGAATTACTA
*
14433033 TTTTACCCTCGATTTA-AAAATTAC
1 TTTTACCCTCGATTTACAGAATTAC
14433057 AGAAATACCC
Statistics
Matches: 89, Mismatches: 14, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
26 28 0.31
27 61 0.69
ACGTcount: A:0.31, C:0.18, G:0.08, T:0.44
Consensus pattern (27 bp):
TTTTACCCTCGATTTACAGAATTACTA
Found at i:14432967 original size:92 final size:91
Alignment explanation
Indices: 14432833--14433012 Score: 225
Period size: 92 Copynumber: 2.0 Consensus size: 91
14432823 TAGAAGTACT
* * * * *
14432833 GTTTTACCCTTGATTTATAGAATTACTGTTTTACCCTTGATTTACAGAATTACCATTTTACCCCC
1 GTTTTACCCTCGACTTACAGAATTACTATTTTACCCTCGATTTACA-AATTACCATTTTACCCCC
*
14432898 GATTTACATAATTACCATTTTACCCCC
65 GATTTACAGAATTACCATTTTACCCCC
* *** **
14432925 GTTTTACCCTCGACTTACAGAATTACTATTTTACTCTCGATTTACAAATTATTGTTTTACCGTCG
1 GTTTTACCCTCGACTTACAGAATTACTATTTTACCCTCGATTTACAAATTACCATTTTACCCCCG
* *
14432990 ATTTATAGAATTACTATTTTACC
66 ATTTACAGAATTACCATTTTACC
14433013 ATTGATTTAT
Statistics
Matches: 74, Mismatches: 14, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
91 34 0.46
92 40 0.54
ACGTcount: A:0.27, C:0.22, G:0.08, T:0.43
Consensus pattern (91 bp):
GTTTTACCCTCGACTTACAGAATTACTATTTTACCCTCGATTTACAAATTACCATTTTACCCCCG
ATTTACAGAATTACCATTTTACCCCC
Found at i:14432969 original size:38 final size:38
Alignment explanation
Indices: 14432889--14432969 Score: 99
Period size: 38 Copynumber: 2.1 Consensus size: 38
14432879 GAATTACCAT
* * *
14432889 TTTACCCCCGATTTACATAATTACCATTTTACCCCCGT
1 TTTACCCCCGACTTACAGAATTACCATTTTACCCCCGA
* * * *
14432927 TTTACCCTCGACTTACAGAATTACTATTTTACTCTCGA
1 TTTACCCCCGACTTACAGAATTACCATTTTACCCCCGA
14432965 TTTAC
1 TTTAC
14432970 AAATTATTGT
Statistics
Matches: 36, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
38 36 1.00
ACGTcount: A:0.25, C:0.30, G:0.06, T:0.40
Consensus pattern (38 bp):
TTTACCCCCGACTTACAGAATTACCATTTTACCCCCGA
Found at i:14433055 original size:53 final size:53
Alignment explanation
Indices: 14432926--14433056 Score: 158
Period size: 53 Copynumber: 2.5 Consensus size: 53
14432916 TTTACCCCCG
* * *
14432926 TTTTACCCTCGACTTACAGAATTACTATTTTACTCTCGATTTACAAATTATTG
1 TTTTACCCTCGATTTACAGAATTACTATTTTACTCTCGATTTACAAATTACTA
* * * *
14432979 TTTTACCGTCGATTTATAGAATTACTATTTTAC-CATTGATTTATAGAATTACTA
1 TTTTACCCTCGATTTACAGAATTACTATTTTACTC-TCGATTTACA-AATTACTA
*
14433033 TTTTACCCTCGATTTA-AAAATTAC
1 TTTTACCCTCGATTTACAGAATTAC
14433057 AGAAATACCC
Statistics
Matches: 67, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
52 1 0.01
53 45 0.67
54 21 0.31
ACGTcount: A:0.31, C:0.18, G:0.08, T:0.44
Consensus pattern (53 bp):
TTTTACCCTCGATTTACAGAATTACTATTTTACTCTCGATTTACAAATTACTA
Found at i:14433089 original size:27 final size:27
Alignment explanation
Indices: 14433036--14433181 Score: 140
Period size: 27 Copynumber: 5.4 Consensus size: 27
14433026 ATTACTATTT
*
14433036 TACCCTCGATTT-AAAAATTA-CAGAAA
1 TACCCTCGATTTGTAAAATTACCA-AAA
*
14433062 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTCGATTTGTAAAATTACCAAAA
*
14433089 TACCACT-GGTTTGTAAAATTACCAAAA
1 TACC-CTCGATTTGTAAAATTACCAAAA
* * * *
14433116 TACCACT-GGTTTGTGAAATTATCGAAA
1 TACC-CTCGATTTGTAAAATTACCAAAA
*
14433143 TACCCTCAAATTT-TAAAATTACCAAAA
1 TACCCTC-GATTTGTAAAATTACCAAAA
*
14433170 TACCCTTGATTT
1 TACCCTCGATTT
14433182 ACAAAGTTAC
Statistics
Matches: 101, Mismatches: 14, Indels: 10
0.81 0.11 0.08
Matches are distributed among these distances:
26 17 0.17
27 77 0.76
28 7 0.07
ACGTcount: A:0.40, C:0.20, G:0.08, T:0.32
Consensus pattern (27 bp):
TACCCTCGATTTGTAAAATTACCAAAA
Found at i:14433191 original size:27 final size:25
Alignment explanation
Indices: 14433036--14433260 Score: 107
Period size: 27 Copynumber: 8.3 Consensus size: 25
14433026 ATTACTATTT
*
14433036 TACCCTCGATTTAAAAATTACAGAAA
1 TACCCTTGATTT-AAAATTACAGAAA
**
14433062 TACCCTCAATTTGTAAAATTACCA-AAA
1 TACCCTTGA-TT-TAAAATTA-CAGAAA
* *
14433089 TACCACTGGTTTGTAAAATTACCA-AAA
1 TACC-CTTGATT-TAAAATTA-CAGAAA
* * *
14433116 TACCACTGGTTTGTGAAATTATC-GAAA
1 TACC-CTTGATT-TAAAATTA-CAGAAA
**
14433143 TACCCTCAAATTTTAAAATTACCA-AAA
1 TACCCT-TGA-TTTAAAATTA-CAGAAA
14433170 TACCCTTGATTTACAAAGTTACAGAAA
1 TACCCTTGATTTA-AAA-TTACAGAAA
*
14433197 TACCCTTGACTTTCTAAAAATTATAGAAA
1 TACCCTTGA--TT-T-AAAATTACAGAAA
* * *
14433226 TACCATTGGTTTACAAAATTACTGAAA
1 TACCCTTGATTT--AAAATTACAGAAA
14433253 TACCCTTG
1 TACCCTTG
14433261 GTTTGTAGAT
Statistics
Matches: 163, Mismatches: 20, Indels: 31
0.76 0.09 0.14
Matches are distributed among these distances:
25 4 0.02
26 17 0.10
27 113 0.69
28 7 0.04
29 17 0.10
30 4 0.02
31 1 0.01
ACGTcount: A:0.41, C:0.19, G:0.09, T:0.31
Consensus pattern (25 bp):
TACCCTTGATTTAAAATTACAGAAA
Found at i:14433339 original size:27 final size:26
Alignment explanation
Indices: 14433309--14433409 Score: 105
Period size: 27 Copynumber: 3.7 Consensus size: 26
14433299 GACTAAAATA
14433309 CCCCTATTAGGTAAAGTGACCGTAAAG
1 CCCCT-TTAGGTAAAGTGACCGTAAAG
*
14433336 CCCCTGTAGGGTAAAGTGACCGTAAAG
1 CCCCTTTA-GGTAAAGTGACCGTAAAG
* *
14433363 CCCCTGTAAGGTAAAGTGACTGTAATA-
1 CCCCT-TTAGGTAAAGTGACCGTAA-AG
* *
14433390 CCCCTGTATGGTAAAATGAC
1 CCCCTTTA-GGTAAAGTGAC
14433410 GAATATGCCC
Statistics
Matches: 63, Mismatches: 7, Indels: 8
0.81 0.09 0.10
Matches are distributed among these distances:
26 3 0.05
27 58 0.92
28 2 0.03
ACGTcount: A:0.32, C:0.22, G:0.24, T:0.23
Consensus pattern (26 bp):
CCCCTTTAGGTAAAGTGACCGTAAAG
Found at i:14434664 original size:9 final size:9
Alignment explanation
Indices: 14434652--14434708 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
14434642 TTTGATAAAC
14434652 ATGATATGT
1 ATGATATGT
*
14434661 ATGATATGCAC
1 ATGATATG--T
*
14434672 ATGACATGT
1 ATGATATGT
*
14434681 ATGATATGCAC
1 ATGATATG--T
14434692 ATGATATGT
1 ATGATATGT
14434701 ATGATATG
1 ATGATATG
14434709 CACACGAGAT
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:14434675 original size:20 final size:20
Alignment explanation
Indices: 14434650--14434712 Score: 117
Period size: 20 Copynumber: 3.1 Consensus size: 20
14434640 ATTTTGATAA
14434650 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
14434670 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
14434690 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
14434710 ACA
1 ACA
14434713 CGAGATGTTC
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.37, C:0.13, G:0.19, T:0.32
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:14434845 original size:23 final size:24
Alignment explanation
Indices: 14434766--14434910 Score: 215
Period size: 24 Copynumber: 6.0 Consensus size: 24
14434756 GAGGAAGTGC
14434766 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
14434790 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
14434814 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
14434838 -AAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
14434861 AAAAAAAGGGCTT-TGCCCCAGTTATT
1 ---AAAAGGGCTTATGCCCCAGTTATT
*
14434887 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
14434911 ATAATAAAGC
Statistics
Matches: 113, Mismatches: 1, Indels: 13
0.89 0.01 0.10
Matches are distributed among these distances:
23 29 0.26
24 54 0.48
25 8 0.07
26 13 0.12
27 9 0.08
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:14435141 original size:31 final size:31
Alignment explanation
Indices: 14435103--14435166 Score: 83
Period size: 31 Copynumber: 2.1 Consensus size: 31
14435093 CGTTTACAGT
14435103 AAAGGCTTCAGCCCAGTAATATGAAATATGA
1 AAAGGCTTCAGCCCAGTAATATGAAATATGA
* * ** *
14435134 AAAGGCTTCGGGCCAGTGTTATGAATTATGA
1 AAAGGCTTCAGCCCAGTAATATGAAATATGA
14435165 AA
1 AA
14435167 TATGAAAAGG
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.38, C:0.14, G:0.23, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCAGCCCAGTAATATGAAATATGA
Found at i:14437298 original size:43 final size:43
Alignment explanation
Indices: 14437134--14437298 Score: 138
Period size: 43 Copynumber: 3.8 Consensus size: 43
14437124 CAATGCCAAC
* * * * *
14437134 GTCCCAGACGTGGTCTTACATGTAACCAAATATCGATGCCATT
1 GTCCCAGACGTGGTCTTACACGAAATCAAATATCGATGCTAAT
* * * *
14437177 GTCCCAGACAG-GGTCTTACACAAAATCAAATA-CAATACTGAT
1 GTCCCAGAC-GTGGTCTTACACGAAATCAAATATCGATGCTAAT
* * * * *
14437219 GTCTCAGTCATGATCTTACACGTAAATCTCAA-ATCGATGCTAAT
1 GTCCCAGACGTGGTCTTACACG-AAATC-AAATATCGATGCTAAT
* *
14437263 GTCCCAGACGTGGTCTGACACGAAATCACATATCGA
1 GTCCCAGACGTGGTCTTACACGAAATCAAATATCGA
14437299 AAATCCTATG
Statistics
Matches: 91, Mismatches: 25, Indels: 12
0.71 0.20 0.09
Matches are distributed among these distances:
42 22 0.24
43 42 0.46
44 27 0.30
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (43 bp):
GTCCCAGACGTGGTCTTACACGAAATCAAATATCGATGCTAAT
Found at i:14439390 original size:30 final size:30
Alignment explanation
Indices: 14439356--14439417 Score: 115
Period size: 30 Copynumber: 2.1 Consensus size: 30
14439346 GCTAAACCTT
*
14439356 TTATAGATATATTAAATAGCTTGACCAAAG
1 TTATAGATAGATTAAATAGCTTGACCAAAG
14439386 TTATAGATAGATTAAATAGCTTGACCAAAG
1 TTATAGATAGATTAAATAGCTTGACCAAAG
14439416 TT
1 TT
14439418 TTATTTACAT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.42, C:0.10, G:0.15, T:0.34
Consensus pattern (30 bp):
TTATAGATAGATTAAATAGCTTGACCAAAG
Found at i:14441621 original size:271 final size:271
Alignment explanation
Indices: 14441134--14441682 Score: 1073
Period size: 271 Copynumber: 2.0 Consensus size: 271
14441124 ACAATTGAAA
14441134 AATG-GGTTGTTACAACAAGGATCCATCTATTCGAAAACACATGCGAATTCATTTTAGGGTTTAT
1 AATGAGGTTGTTACAACAAGGATCCATCTATTCGAAAACACATGCGAATTCATTTTAGGGTTTAT
14441198 TGCTATAAATATCACAAATAGAGTCAGTTTTCAAAATTTTTATTTTCTTCTATGTAAGAAAATCA
66 TGCTATAAATATCACAAATAGAGTCAGTTTTCAAAATTTTTATTTTCTTCTATGTAAGAAAATCA
14441263 TTTTCAAACCGGATTTTTTCTAACACCACTGTAGGTGAGCTATCTAAGAAAGAGGAAGTTCTCAA
131 TTTTCAAACCGGATTTTTTCTAACACCACTGTAGGTGAGCTATCTAAGAAAGAGGAAGTTCTCAA
14441328 GGCTATGGTGTTAACCTTGAAAAAATCGATTGAGGAGATCAAGAGGGAGCTCAATATCTGCAAAG
196 GGCTATGGTGTTAACCTTGAAAAAATCGATTGAGGAGATCAAGAGGGAGCTCAATATCTGCAAAG
14441393 CTGCTTTGGGT
261 CTGCTTTGGGT
*
14441404 AATGAGGTTGTTACAACAAGGATCCATCTATTCGAAAACACGTGCGAATTCATTTTAGGGTTTAT
1 AATGAGGTTGTTACAACAAGGATCCATCTATTCGAAAACACATGCGAATTCATTTTAGGGTTTAT
14441469 TGCTATAAATATCACAAATAGAGTCAGTTTTCAAAATTTTTATTTTCTTCTATGTAAGAAAATCA
66 TGCTATAAATATCACAAATAGAGTCAGTTTTCAAAATTTTTATTTTCTTCTATGTAAGAAAATCA
14441534 TTTTCAAACCGGATTTTTTCTAACACCACTGTAGGTGAGCTATCTAAGAAAGAGGAAGTTCTCAA
131 TTTTCAAACCGGATTTTTTCTAACACCACTGTAGGTGAGCTATCTAAGAAAGAGGAAGTTCTCAA
*
14441599 GGCTATGGTGTTGACCTTGAAAAAATCGATTGAGGAGATCAAGAGGGAGCTCAATATCTGCAAAG
196 GGCTATGGTGTTAACCTTGAAAAAATCGATTGAGGAGATCAAGAGGGAGCTCAATATCTGCAAAG
14441664 CTGCTTTGGGT
261 CTGCTTTGGGT
14441675 AATGAGGT
1 AATGAGGT
14441683 GTTGGCTACG
Statistics
Matches: 276, Mismatches: 2, Indels: 1
0.99 0.01 0.00
Matches are distributed among these distances:
270 4 0.01
271 272 0.99
ACGTcount: A:0.33, C:0.15, G:0.20, T:0.32
Consensus pattern (271 bp):
AATGAGGTTGTTACAACAAGGATCCATCTATTCGAAAACACATGCGAATTCATTTTAGGGTTTAT
TGCTATAAATATCACAAATAGAGTCAGTTTTCAAAATTTTTATTTTCTTCTATGTAAGAAAATCA
TTTTCAAACCGGATTTTTTCTAACACCACTGTAGGTGAGCTATCTAAGAAAGAGGAAGTTCTCAA
GGCTATGGTGTTAACCTTGAAAAAATCGATTGAGGAGATCAAGAGGGAGCTCAATATCTGCAAAG
CTGCTTTGGGT
Found at i:14443261 original size:27 final size:27
Alignment explanation
Indices: 14443225--14443286 Score: 88
Period size: 27 Copynumber: 2.3 Consensus size: 27
14443215 CATCCCATAG
14443225 GGGCAAAATAGTCATCCTACCACAAAA
1 GGGCAAAATAGTCATCCTACCACAAAA
** * *
14443252 GGGCAAAATAGTCATTTTACCTCATAA
1 GGGCAAAATAGTCATCCTACCACAAAA
14443279 GGGCAAAA
1 GGGCAAAA
14443287 CCATCATTTT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.42, C:0.21, G:0.18, T:0.19
Consensus pattern (27 bp):
GGGCAAAATAGTCATCCTACCACAAAA
Found at i:14443293 original size:27 final size:27
Alignment explanation
Indices: 14443242--14443434 Score: 158
Period size: 27 Copynumber: 7.1 Consensus size: 27
14443232 ATAGTCATCC
* *
14443242 TACCACAAAAGGGCAAAA-TAGTCATTT
1 TACCACATAAGGGCAAAACCA-TCATTT
*
14443269 TACCTCATAAGGGCAAAACCATCATTT
1 TACCACATAAGGGCAAAACCATCATTT
* * *
14443296 TACCAAATAAAGGCAAAACCGTCATTT
1 TACCACATAAGGGCAAAACCATCATTT
* ** *
14443323 TAACACATAAGGG-AAAATTAGTTATTT
1 TACCACATAAGGGCAAAACCA-TCATTT
* * *
14443350 TTCCACATAAGGGCAAAACCGTTATTT
1 TACCACATAAGGGCAAAACCATCATTT
* * * * *
14443377 TATCACATAAGAGAAAAATCGTCATTT
1 TACCACATAAGGGCAAAACCATCATTT
* *
14443404 TAACTCATAAGGGCAAAA-CAGTCATTT
1 TACCACATAAGGGCAAAACCA-TCATTT
14443431 TACC
1 TACC
14443435 TTACAGGGGT
Statistics
Matches: 131, Mismatches: 31, Indels: 8
0.77 0.18 0.05
Matches are distributed among these distances:
26 5 0.04
27 121 0.92
28 5 0.04
ACGTcount: A:0.41, C:0.19, G:0.13, T:0.27
Consensus pattern (27 bp):
TACCACATAAGGGCAAAACCATCATTT
Found at i:14443300 original size:54 final size:53
Alignment explanation
Indices: 14443242--14443434 Score: 181
Period size: 54 Copynumber: 3.6 Consensus size: 53
14443232 ATAGTCATCC
* * *
14443242 TACCACAAAAGGGCAAAATAGTCATTTTACCTCATAAGGGCAAAACCATCATTT
1 TACCACAAAAGGGCAAAACAGTCATTTTACCACATAAGGG-AAAATCATCATTT
* * * * *
14443296 TACCA-AATAAAGGCAAAACCGTCATTTTAACACATAAGGGAAAATTAGTTATTT
1 TACCACAA-AAGGGCAAAACAGTCATTTTACCACATAAGGGAAAATCA-TCATTT
* * * * * * *
14443350 TTCCACATAAGGGCAAAACCGTTATTTTATCACATAAGAGAAAAATCGTCATTT
1 TACCACAAAAGGGCAAAACAGTCATTTTACCACATAAG-GGAAAATCATCATTT
* * *
14443404 TAACTCATAAGGGCAAAACAGTCATTTTACC
1 TACCACAAAAGGGCAAAACAGTCATTTTACC
14443435 TTACAGGGGT
Statistics
Matches: 112, Mismatches: 23, Indels: 8
0.78 0.16 0.06
Matches are distributed among these distances:
53 7 0.06
54 98 0.88
55 7 0.06
ACGTcount: A:0.41, C:0.19, G:0.13, T:0.27
Consensus pattern (53 bp):
TACCACAAAAGGGCAAAACAGTCATTTTACCACATAAGGGAAAATCATCATTT
Found at i:14443361 original size:81 final size:81
Alignment explanation
Indices: 14443245--14443434 Score: 240
Period size: 81 Copynumber: 2.3 Consensus size: 81
14443235 GTCATCCTAC
* *
14443245 CACAAAAGGGCAAAATAGTCATTTTACCTCATAAGGGCAAAACCATCATTTTACCAAATAA-AGG
1 CACATAAGGGCAAAATAGTCATTTTACCACATAAGGGCAAAACCATCATTTTACCAAATAAGA-G
*
14443309 CAAAACCGTCATTTTAA
65 AAAAACCGTCATTTTAA
* * * * * *
14443326 CACATAAGGG-AAAATTAGTTATTTTTCCACATAAGGGCAAAACCGTTATTTTATCACATAAGAG
1 CACATAAGGGCAAAA-TAGTCATTTTACCACATAAGGGCAAAACCATCATTTTACCAAATAAGAG
*
14443390 AAAAATCGTCATTTTAA
65 AAAAACCGTCATTTTAA
* *
14443407 CTCATAAGGGCAAAACAGTCATTTTACC
1 CACATAAGGGCAAAATAGTCATTTTACC
14443435 TTACAGGGGT
Statistics
Matches: 92, Mismatches: 14, Indels: 6
0.82 0.12 0.05
Matches are distributed among these distances:
80 4 0.04
81 83 0.90
82 5 0.05
ACGTcount: A:0.41, C:0.19, G:0.13, T:0.27
Consensus pattern (81 bp):
CACATAAGGGCAAAATAGTCATTTTACCACATAAGGGCAAAACCATCATTTTACCAAATAAGAGA
AAAACCGTCATTTTAA
Found at i:14443506 original size:53 final size:54
Alignment explanation
Indices: 14443425--14443556 Score: 185
Period size: 53 Copynumber: 2.5 Consensus size: 54
14443415 GGCAAAACAG
* ** * * *
14443425 TCATTTTACCTTACAGGGGTATTACAATCATTTTACCCCATAGGGGTATTTTGG
1 TCATTTTACCCTATGGGGGTATTTCAATCATTTTACCCCATAGGGGTATTTCGA
*
14443479 TCA-TTTACCCTATGGGGGTATTTCAATCATTTTACCCTATAGGGGTATTTCGA
1 TCATTTTACCCTATGGGGGTATTTCAATCATTTTACCCCATAGGGGTATTTCGA
*
14443532 TCATTTTACGCTATGGGGGTATTTC
1 TCATTTTACCCTATGGGGGTATTTC
14443557 GGTCATTATT
Statistics
Matches: 69, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
53 46 0.67
54 23 0.33
ACGTcount: A:0.22, C:0.18, G:0.20, T:0.40
Consensus pattern (54 bp):
TCATTTTACCCTATGGGGGTATTTCAATCATTTTACCCCATAGGGGTATTTCGA
Found at i:14443557 original size:27 final size:27
Alignment explanation
Indices: 14443425--14443563 Score: 163
Period size: 27 Copynumber: 5.2 Consensus size: 27
14443415 GGCAAAACAG
* * * *
14443425 TCATTTTACCTTACAGGGGTATTACAA
1 TCATTTTACCCTATAGGGGTATTTCGA
* * *
14443452 TCATTTTACCCCATAGGGGTATTTTGG
1 TCATTTTACCCTATAGGGGTATTTCGA
* *
14443479 TCA-TTTACCCTATGGGGGTATTTCAA
1 TCATTTTACCCTATAGGGGTATTTCGA
14443505 TCATTTTACCCTATAGGGGTATTTCGA
1 TCATTTTACCCTATAGGGGTATTTCGA
* * *
14443532 TCATTTTACGCTATGGGGGTATTTCGG
1 TCATTTTACCCTATAGGGGTATTTCGA
14443559 TCATT
1 TCATT
14443564 ATTTCGTCCC
Statistics
Matches: 94, Mismatches: 17, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
26 21 0.22
27 73 0.78
ACGTcount: A:0.22, C:0.18, G:0.20, T:0.40
Consensus pattern (27 bp):
TCATTTTACCCTATAGGGGTATTTCGA
Found at i:14449384 original size:22 final size:22
Alignment explanation
Indices: 14449359--14449405 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
14449349 GAGATTCTTG
*
14449359 CATTCAACTTATTATGTTGCGA
1 CATTCAACTTATTATGTTGCAA
* * *
14449381 CATTGAACTTCTTGTGTTGCAA
1 CATTCAACTTATTATGTTGCAA
14449403 CAT
1 CAT
14449406 AGCGACTAGT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.26, C:0.19, G:0.15, T:0.40
Consensus pattern (22 bp):
CATTCAACTTATTATGTTGCAA
Found at i:14455640 original size:24 final size:25
Alignment explanation
Indices: 14455608--14455683 Score: 100
Period size: 24 Copynumber: 3.0 Consensus size: 25
14455598 TGACATTCTG
*
14455608 CTAAGTGAAATAAGACCATGGCAT-
1 CTAAGTGAAATAAGTCCATGGCATA
14455632 CTAAGTGAAATAAGTCCATGGCAATGTA
1 CTAAGTGAAATAAGTCCATGGC-A--TA
*
14455660 CTAAGTGAAATAAGTTCATGGCAT
1 CTAAGTGAAATAAGTCCATGGCAT
14455684 TGTGCTAAGT
Statistics
Matches: 46, Mismatches: 2, Indels: 7
0.84 0.04 0.13
Matches are distributed among these distances:
24 21 0.46
25 2 0.04
27 2 0.04
28 21 0.46
ACGTcount: A:0.39, C:0.14, G:0.21, T:0.25
Consensus pattern (25 bp):
CTAAGTGAAATAAGTCCATGGCATA
Found at i:14455672 original size:28 final size:27
Alignment explanation
Indices: 14455608--14455695 Score: 110
Period size: 28 Copynumber: 3.3 Consensus size: 27
14455598 TGACATTCTG
*
14455608 CTAAGTGAAATAAGACCATGGC-A--T
1 CTAAGTGAAATAAGTCCATGGCAATGT
14455632 CTAAGTGAAATAAGTCCATGGCAATGT
1 CTAAGTGAAATAAGTCCATGGCAATGT
* *
14455659 ACTAAGTGAAATAAGTTCATGGCATTGT
1 -CTAAGTGAAATAAGTCCATGGCAATGT
14455687 GCTAAGTGA
1 -CTAAGTGA
14455696 GAAATTTCTC
Statistics
Matches: 56, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
24 21 0.38
25 1 0.02
27 1 0.02
28 33 0.59
ACGTcount: A:0.38, C:0.14, G:0.23, T:0.26
Consensus pattern (27 bp):
CTAAGTGAAATAAGTCCATGGCAATGT
Found at i:14455774 original size:51 final size:51
Alignment explanation
Indices: 14455719--14455968 Score: 394
Period size: 51 Copynumber: 4.9 Consensus size: 51
14455709 TGAACCTTAG
*
14455719 GAATAAAATAGCTTTGGACACAAGTGTCGTACTATGTGAAGGCCACTTTGT
1 GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
* * *
14455770 GAATATAATAGCTTTGGACACAAGTGTGGTACTTTGTGAATGCCACTTTGT
1 GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
** *
14455821 GAATTTAATATCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
1 GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
* *
14455872 GAATAAAATAGCTTTGGACATAAGTCTGGTACTATGTGAAGGCCACTTTGT
1 GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
*
14455923 GAATAAAATAGCTTTGG-CTACAAGGGTGGTACTATGTGAAGGCCAC
1 GAATAAAATAGCTTTGGAC-ACAAGTGTGGTACTATGTGAAGGCCAC
14455969 CATGTATCTA
Statistics
Matches: 182, Mismatches: 16, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
50 1 0.01
51 181 0.99
ACGTcount: A:0.30, C:0.14, G:0.24, T:0.31
Consensus pattern (51 bp):
GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
Found at i:14466577 original size:40 final size:40
Alignment explanation
Indices: 14466532--14466661 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
14466522 CGGAATACAA
14466532 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* ** *
14466572 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
14466612 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
14466652 CCGGATATAA
1 CCGGATATAA
14466662 TTTCCAGCAT
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 3 0.04
40 73 0.96
ACGTcount: A:0.24, C:0.28, G:0.25, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:14466676 original size:40 final size:40
Alignment explanation
Indices: 14466532--14466695 Score: 145
Period size: 40 Copynumber: 4.1 Consensus size: 40
14466522 CGGAATACAA
* **
14466532 CCGGATATAACCACGTGCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCACCAGCAC-AATTGCCTTCGGGTCTTAGC
* *
14466572 CCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-CAGCAC-AATTGCCTTCGGGTCTTAGC
* ** * *
14466612 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
** * * *
14466652 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
14466692 CCGG
1 CCGG
14466696 GTATCATTCA
Statistics
Matches: 100, Mismatches: 21, Indels: 6
0.79 0.17 0.05
Matches are distributed among these distances:
39 2 0.02
40 98 0.98
ACGTcount: A:0.22, C:0.28, G:0.25, T:0.25
Consensus pattern (40 bp):
CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
Found at i:14472071 original size:28 final size:28
Alignment explanation
Indices: 14472006--14472106 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
14471996 ATAGTGAATC
*
14472006 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
14472035 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
14472063 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
14472093 CGCACACTTAGTGC
1 CGCACACTTAGTGC
14472107 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:14473975 original size:40 final size:40
Alignment explanation
Indices: 14473813--14473976 Score: 161
Period size: 40 Copynumber: 4.1 Consensus size: 40
14473803 TGAATGATAC
* * * * *
14473813 CCGGGCTAAGTCTCGAAGGCATTTATGCTAGTGATTATGT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
* *
14473853 TCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCAATT-GTGCTAG-TGATTATAT
* * ** *
14473893 CCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
* * *
14473933 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
14473973 CCGG
1 CCGG
14473977 TTGAATCCCG
Statistics
Matches: 99, Mismatches: 21, Indels: 8
0.77 0.16 0.06
Matches are distributed among these distances:
39 3 0.03
40 91 0.92
41 5 0.05
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
Found at i:14485487 original size:40 final size:40
Alignment explanation
Indices: 14485379--14485628 Score: 385
Period size: 40 Copynumber: 6.2 Consensus size: 40
14485369 CGGGATTTAA
* * * * *
14485379 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
14485419 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
14485459 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
14485499 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
14485539 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
14485579 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
14485619 CCGGATATAT
1 CCGGATATAT
14485629 TTCCAATGTT
Statistics
Matches: 193, Mismatches: 15, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
39 1 0.01
40 192 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:14493660 original size:40 final size:40
Alignment explanation
Indices: 14493552--14493801 Score: 385
Period size: 40 Copynumber: 6.2 Consensus size: 40
14493542 CGGGATTTAA
* * * * *
14493552 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
14493592 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
14493632 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
14493672 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
14493712 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
14493752 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
14493792 CCGGATATAT
1 CCGGATATAT
14493802 TTCCAATGTT
Statistics
Matches: 193, Mismatches: 15, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
39 1 0.01
40 192 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:14499986 original size:46 final size:46
Alignment explanation
Indices: 14499936--14500111 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
14499926 TGGTTGAGCA
14499936 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
14499982 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
14500027 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
14500075 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
14500112 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:14500092 original size:93 final size:93
Alignment explanation
Indices: 14499933--14500104 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
14499923 GGATGGTTGA
* *
14499933 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
14499998 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
14500026 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
14500091 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
14500105 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:14507557 original size:46 final size:46
Alignment explanation
Indices: 14507507--14507635 Score: 222
Period size: 46 Copynumber: 2.8 Consensus size: 46
14507497 TGGTTGAGCA
*
14507507 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
14507553 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * *
14507599 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
14507636 GCGGGTTACA
Statistics
Matches: 79, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
46 79 1.00
ACGTcount: A:0.19, C:0.22, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:14512394 original size:21 final size:21
Alignment explanation
Indices: 14512365--14512404 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
14512355 GACCACACGG
*
14512365 CCTACCCACACGGGCGTGTCC
1 CCTACCCACACGAGCGTGTCC
*
14512386 CCTATCCACACGAGCGTGT
1 CCTACCCACACGAGCGTGT
14512405 GACCCCTGTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.17, C:0.42, G:0.23, T:0.17
Consensus pattern (21 bp):
CCTACCCACACGAGCGTGTCC
Found at i:14514922 original size:20 final size:20
Alignment explanation
Indices: 14514881--14514940 Score: 61
Period size: 19 Copynumber: 3.0 Consensus size: 20
14514871 ATCATTCAAT
*
14514881 AACAGTAAC-TCATCCGTTTA
1 AACAGT-ACTTCATCCGTATA
*
14514901 AACAGTACTTCATCCATATA
1 AACAGTACTTCATCCGTATA
* *
14514921 AA-TGTAATTCATCCGTATA
1 AACAGTACTTCATCCGTATA
14514940 A
1 A
14514941 CACATAGCTT
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
19 17 0.50
20 17 0.50
ACGTcount: A:0.38, C:0.22, G:0.08, T:0.32
Consensus pattern (20 bp):
AACAGTACTTCATCCGTATA
Found at i:14515994 original size:11 final size:11
Alignment explanation
Indices: 14515978--14516002 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
14515968 TAGAATAGAA
14515978 ATGATTATTTT
1 ATGATTATTTT
14515989 ATGATTATTTT
1 ATGATTATTTT
14516000 ATG
1 ATG
14516003 GTCCATTATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.28, C:0.00, G:0.12, T:0.60
Consensus pattern (11 bp):
ATGATTATTTT
Found at i:14518844 original size:23 final size:23
Alignment explanation
Indices: 14518711--14518881 Score: 225
Period size: 25 Copynumber: 7.1 Consensus size: 23
14518701 CCTAGCCTCT
* * *
14518711 TTTAGTAACTGGGGCAAAAACCC
1 TTTAATAACTGGGGCATAAGCCC
*
14518734 TTTTTATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
14518758 TTTATCATAACTGGGGCATAAGCCC
1 TTTA--ATAACTGGGGCATAAGCCC
* *
14518783 TTCATCATAACTGGGGCATAAACCC
1 TT--TAATAACTGGGGCATAAGCCC
14518808 TTTATCATAACTGGGGCATAAGCCC
1 TTTA--ATAACTGGGGCATAAGCCC
14518833 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
14518856 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
14518879 TTT
1 TTT
14518882 TGCACTTCCT
Statistics
Matches: 132, Mismatches: 9, Indels: 13
0.86 0.06 0.08
Matches are distributed among these distances:
23 49 0.37
24 19 0.14
25 63 0.48
27 1 0.01
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.28
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:14518956 original size:20 final size:20
Alignment explanation
Indices: 14518928--14519038 Score: 195
Period size: 20 Copynumber: 5.5 Consensus size: 20
14518918 GCATTTATGA
*
14518928 ACATCTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
14518948 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
*
14518968 ACATGTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
14518988 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
*
14519008 ACATGTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
14519028 ACATATCATGT
1 ACATATCATGT
14519039 TTATCAAAAT
Statistics
Matches: 86, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 86 1.00
ACGTcount: A:0.32, C:0.21, G:0.12, T:0.35
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:14519103 original size:25 final size:25
Alignment explanation
Indices: 14519075--14519122 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
14519065 ATATATAAAC
* * *
14519075 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
14519100 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
14519123 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:14520311 original size:27 final size:27
Alignment explanation
Indices: 14520281--14520345 Score: 78
Period size: 27 Copynumber: 2.4 Consensus size: 27
14520271 AGGCATATTC
14520281 GTCATTTTACCATACAGAGG-TATTACG
1 GTCATTTTACCATACAGAGGCT-TTACG
* * *
14520308 GTCACTTTACCCTACAGGGGCTTTACG
1 GTCATTTTACCATACAGAGGCTTTACG
*
14520335 GTCTTTTTACC
1 GTCATTTTACC
14520346 TAATAGGGGT
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
27 31 0.97
28 1 0.03
ACGTcount: A:0.22, C:0.25, G:0.18, T:0.35
Consensus pattern (27 bp):
GTCATTTTACCATACAGAGGCTTTACG
Found at i:14520547 original size:54 final size:54
Alignment explanation
Indices: 14520489--14520628 Score: 165
Period size: 54 Copynumber: 2.6 Consensus size: 54
14520479 TGTAAATCAG
14520489 GGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCAGTAATTTCACAAACCAA
1 GGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCAGTAATTTCACAAACCAA
* * * ** * *
14520543 GGGTATTTTGATAGTTTTACAAACT-AGGGGTATTTTGGTAATTTTACAAACTAA
1 GGGTATTTTGGTAATTTTACAAATTGA-GGGTATTTCAGTAATTTCACAAACCAA
* ** *
14520597 GGGTATTTTAGTAATTTTGTAAATCGAGGGTA
1 GGGTATTTTGGTAATTTTACAAATTGAGGGTA
14520629 AAATAGTAAT
Statistics
Matches: 70, Mismatches: 14, Indels: 4
0.80 0.16 0.05
Matches are distributed among these distances:
53 1 0.01
54 68 0.97
55 1 0.01
ACGTcount: A:0.31, C:0.08, G:0.21, T:0.39
Consensus pattern (54 bp):
GGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCAGTAATTTCACAAACCAA
Found at i:14520626 original size:27 final size:27
Alignment explanation
Indices: 14520376--14520682 Score: 147
Period size: 27 Copynumber: 11.3 Consensus size: 27
14520366 TTTCATCCTA
* * * * * *
14520376 CAAGGGTGTTTTGGTAAATCTACAAAC
1 CAAGGGTATTTTAGTAATTTTATAAAT
* * * *
14520403 CAAGGGTATTTCAGTAATTTTGTTAAC
1 CAAGGGTATTTTAGTAATTTTATAAAT
* *
14520430 CAATGGTATTTCTA-TAATTTTTAGAAAGT
1 CAAGGGTATTT-TAGTAA-TTTTATAAA-T
* *
14520459 CAAGGGTATTTCT-GTAACTTTGTAAAT
1 CAAGGGTATTT-TAGTAATTTTATAAAT
* * *
14520486 CAGGGGTATTTTGGTAATTTTACAAAT
1 CAAGGGTATTTTAGTAATTTTATAAAT
** * * * *
14520513 TGAGGGTATTTCAGTAATTTCACAAAC
1 CAAGGGTATTTTAGTAATTTTATAAAT
* *
14520540 CAAGGGTATTTT-GATAGTTTTACAAA-
1 CAAGGGTATTTTAG-TAATTTTATAAAT
* * *
14520566 CTAGGGGTATTTTGGTAATTTTACAAA-
1 C-AAGGGTATTTTAGTAATTTTATAAAT
*
14520593 CTAAGGGTATTTTAGTAATTTTGTAAAT
1 C-AAGGGTATTTTAGTAATTTTATAAAT
* *** * *
14520621 CGAGGGTAAAATAGTAATTCTGTAAAT
1 CAAGGGTATTTTAGTAATTTTATAAAT
* *** *
14520648 TAAGGGTAAAATAGTAATTCTATAAAT
1 CAAGGGTATTTTAGTAATTTTATAAAT
*
14520675 CGAGGGTA
1 CAAGGGTA
14520683 AAACTGTAAT
Statistics
Matches: 221, Mismatches: 50, Indels: 18
0.76 0.17 0.06
Matches are distributed among these distances:
26 3 0.01
27 188 0.85
28 15 0.07
29 15 0.07
ACGTcount: A:0.34, C:0.09, G:0.20, T:0.37
Consensus pattern (27 bp):
CAAGGGTATTTTAGTAATTTTATAAAT
Found at i:14520638 original size:54 final size:54
Alignment explanation
Indices: 14520580--14520740 Score: 146
Period size: 54 Copynumber: 3.0 Consensus size: 54
14520570 GGGTATTTTG
* *** * *
14520580 GTAATTTTACAAACTAAGGGTATTTTAGTAATTTTGTAAATCGAGGGTAAAA-T
1 GTAATTCTACAAACTAAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACT
** *
14520633 AGTAATTCTGTAAATTAAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACT
1 -GTAATTCTACAAACTAAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACT
** * ** * *
14520688 GTAATTCTGTAAA-TCGAGGGTAAAACGGTAATTCTGTAAGTCGAGGGTAAAAC
1 GTAATTCTACAAACT-AAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAAC
14520741 GATAATTATG
Statistics
Matches: 91, Mismatches: 14, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
53 1 0.01
54 89 0.98
55 1 0.01
ACGTcount: A:0.39, C:0.08, G:0.21, T:0.32
Consensus pattern (54 bp):
GTAATTCTACAAACTAAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACT
Found at i:14520683 original size:27 final size:27
Alignment explanation
Indices: 14520605--14520815 Score: 227
Period size: 27 Copynumber: 7.9 Consensus size: 27
14520595 AAGGGTATTT
*
14520605 TAGTAATTTTGTAAATCGAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
**
14520632 TAGTAATTCTGTAAATTAAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
*
14520659 TAGTAATTCTATAAATCGAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
14520686 CT-GTAATTCTGTAAATCGAGGGTAAAA
1 -TAGTAATTCTGTAAATCGAGGGTAAAA
** *
14520713 CGGTAATTCTGTAAGTCGAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
* *
14520740 -CGATAATTATGTAAATC-AGGGGTAAAA
1 TAG-TAATTCTGTAAATCGA-GGGTAAAA
** *
14520767 CGGTAATTATGTAAATCG-GGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
*
14520793 -CGATAATTCTGTAAATCG-GGGTA
1 TAG-TAATTCTGTAAATCGAGGGTA
14520816 CTTTGGTAAT
Statistics
Matches: 162, Mismatches: 15, Indels: 15
0.84 0.08 0.08
Matches are distributed among these distances:
25 1 0.01
26 29 0.18
27 130 0.80
28 2 0.01
ACGTcount: A:0.39, C:0.08, G:0.23, T:0.29
Consensus pattern (27 bp):
TAGTAATTCTGTAAATCGAGGGTAAAA
Found at i:14520735 original size:81 final size:81
Alignment explanation
Indices: 14520607--14520815 Score: 264
Period size: 81 Copynumber: 2.6 Consensus size: 81
14520597 GGGTATTTTA
* ** ** *
14520607 GTAATTTTGTAAATCGAGGGTAAAATAGTAATTCTGTAAATTAAGGGTAAAATAG-TAATTCTAT
1 GTAATTATGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAA-AGATAATTATAT
*
14520671 AAATC-GAGGGTAAAACT
65 AAATCAG-GGGTAAAACG
* * * *
14520688 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAGTCGAGGGTAAAACGATAATTATGTA
1 GTAATTATGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAAAGATAATTATATA
14520753 AATCAGGGGTAAAACG
66 AATCAGGGGTAAAACG
*
14520769 GTAATTATGTAAATCG-GGGTAAAACGATAATTCTGTAAATCG-GGGTA
1 GTAATTATGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTA
14520816 CTTTGGTAAT
Statistics
Matches: 113, Mismatches: 13, Indels: 6
0.86 0.10 0.05
Matches are distributed among these distances:
79 5 0.04
80 25 0.22
81 82 0.73
82 1 0.01
ACGTcount: A:0.39, C:0.08, G:0.23, T:0.29
Consensus pattern (81 bp):
GTAATTATGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAAAGATAATTATATA
AATCAGGGGTAAAACG
Found at i:14520747 original size:54 final size:54
Alignment explanation
Indices: 14520607--14520815 Score: 266
Period size: 54 Copynumber: 3.9 Consensus size: 54
14520597 GGGTATTTTA
* * ** **
14520607 GTAATTTTGTAAATCGAGGGTAAAA-TAGTAATTCTGTAAATTAAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACGA-TAATTCTGTAAATCGAGGGTAAAACG
*
14520661 GTAATTCTATAAATCGAGGGTAAAACTG-TAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAAC-GATAATTCTGTAAATCGAGGGTAAAACG
* *
14520715 GTAATTCTGTAAGTCGAGGGTAAAACGATAATTATGTAAATC-AGGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACGATAATTCTGTAAATCGA-GGGTAAAACG
*
14520769 GTAATTATGTAAATCG-GGGTAAAACGATAATTCTGTAAATCG-GGGTA
1 GTAATTCTGTAAATCGAGGGTAAAACGATAATTCTGTAAATCGAGGGTA
14520816 CTTTGGTAAT
Statistics
Matches: 137, Mismatches: 13, Indels: 12
0.85 0.08 0.07
Matches are distributed among these distances:
52 5 0.04
53 26 0.19
54 106 0.77
ACGTcount: A:0.39, C:0.08, G:0.23, T:0.29
Consensus pattern (54 bp):
GTAATTCTGTAAATCGAGGGTAAAACGATAATTCTGTAAATCGAGGGTAAAACG
Found at i:14520851 original size:27 final size:26
Alignment explanation
Indices: 14520821--14520910 Score: 108
Period size: 27 Copynumber: 3.3 Consensus size: 26
14520811 GGGTACTTTG
14520821 GTAATTTTACAAGTCGAAGGTATTTCA
1 GTAATTTTACAA-TCGAAGGTATTTCA
*
14520848 GTAATTTTACAAATCGAGGGTATTTCA
1 GTAATTTTAC-AATCGAAGGTATTTCA
* * * *
14520875 GTATTTTTACAAACTAAGGGTATTTCG
1 GTAATTTTACAATCGAA-GGTATTTCA
14520902 GTAATTTTA
1 GTAATTTTA
14520911 GTAAACTAAA
Statistics
Matches: 54, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
26 4 0.07
27 48 0.89
28 2 0.04
ACGTcount: A:0.32, C:0.10, G:0.18, T:0.40
Consensus pattern (26 bp):
GTAATTTTACAATCGAAGGTATTTCA
Found at i:14520924 original size:27 final size:27
Alignment explanation
Indices: 14520821--14520925 Score: 90
Period size: 27 Copynumber: 3.9 Consensus size: 27
14520811 GGGTACTTTG
* *
14520821 GTAATTTTACAAGTCGAAG-GTATTTCA
1 GTAATTTTACAA-ACTAAGAGTATTTCA
* *
14520848 GTAATTTTACAAA-TCGAGGGTATTTCA
1 GTAATTTTACAAACT-AAGAGTATTTCA
* * *
14520875 GTATTTTTACAAACTAAGGGTATTTCG
1 GTAATTTTACAAACTAAGAGTATTTCA
*
14520902 GTAATTTTAGTAAACTAA-AGTATT
1 GTAATTTTA-CAAACTAAGAGTATT
14520926 CTAAACATGG
Statistics
Matches: 65, Mismatches: 9, Indels: 8
0.79 0.11 0.10
Matches are distributed among these distances:
26 2 0.03
27 55 0.85
28 8 0.12
ACGTcount: A:0.34, C:0.10, G:0.17, T:0.39
Consensus pattern (27 bp):
GTAATTTTACAAACTAAGAGTATTTCA
Found at i:14527393 original size:17 final size:16
Alignment explanation
Indices: 14527342--14527399 Score: 71
Period size: 16 Copynumber: 3.4 Consensus size: 16
14527332 TAATATTAGC
14527342 ATATAAATAGAAATAGAA
1 ATATAAA-A-AAATAGAA
14527360 ATATAAAAAAATAGAA
1 ATATAAAAAAATAGAA
* *
14527376 ATATAATAATAGTAGAA
1 ATATAA-AAAAATAGAA
14527393 ATATAAA
1 ATATAAA
14527400 TTGATAAATA
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
16 15 0.41
17 15 0.41
18 7 0.19
ACGTcount: A:0.67, C:0.00, G:0.09, T:0.24
Consensus pattern (16 bp):
ATATAAAAAAATAGAA
Found at i:14527408 original size:14 final size:15
Alignment explanation
Indices: 14527391--14527429 Score: 53
Period size: 14 Copynumber: 2.6 Consensus size: 15
14527381 ATAATAGTAG
14527391 AAATATAAATT-GAT
1 AAATATAAATTAGAT
*
14527405 AAATAAAAATTAGAT
1 AAATATAAATTAGAT
14527420 AAATAATAAA
1 AAAT-ATAAA
14527430 ATAGCAACAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
14 10 0.48
15 7 0.33
16 4 0.19
ACGTcount: A:0.67, C:0.00, G:0.05, T:0.28
Consensus pattern (15 bp):
AAATATAAATTAGAT
Found at i:14527449 original size:17 final size:16
Alignment explanation
Indices: 14527422--14527453 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
14527412 AATTAGATAA
14527422 ATAATAAAATAGCAAC
1 ATAATAAAATAGCAAC
14527438 ATAATAATAATAGCAA
1 ATAATAA-AATAGCAA
14527454 TAATATATTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.62, C:0.09, G:0.06, T:0.22
Consensus pattern (16 bp):
ATAATAAAATAGCAAC
Found at i:14527459 original size:63 final size:59
Alignment explanation
Indices: 14527344--14527460 Score: 139
Period size: 63 Copynumber: 1.9 Consensus size: 59
14527334 ATATTAGCAT
* *
14527344 ATAAATAGAAATAGAAATATAAAAAAATAGAAATATAATAATAGTAGAAATATAAATTG
1 ATAAATAAAAATAGAAATATAAAAAAATAGAAATATAATAATAGCAGAAATATAAATTG
*
14527403 ATAAATAAAAATTAGATAA-ATAATAAAATAGCAACATAATAATAATAGCA-ATAATATA
1 ATAAATAAAAA-TAGA-AATATAAAAAAATAG-AA-AT-ATAATAATAGCAGA-AATATA
14527461 TTAAATTAGT
Statistics
Matches: 49, Mismatches: 3, Indels: 8
0.82 0.05 0.13
Matches are distributed among these distances:
59 10 0.20
60 15 0.31
61 4 0.08
62 3 0.06
63 17 0.35
ACGTcount: A:0.64, C:0.03, G:0.08, T:0.26
Consensus pattern (59 bp):
ATAAATAAAAATAGAAATATAAAAAAATAGAAATATAATAATAGCAGAAATATAAATTG
Found at i:14531957 original size:2 final size:2
Alignment explanation
Indices: 14531950--14531982 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
14531940 CGTAACTAGA
*
14531950 AT AT AT AT AT AT AT AT AT AT AT AT AT AT TT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
14531983 AGAAGCCAAG
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
AT
Found at i:14532156 original size:2 final size:2
Alignment explanation
Indices: 14532149--14532179 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
14532139 GAAGTTGCCG
14532149 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
14532180 TTGGGAAAGG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:14533492 original size:43 final size:43
Alignment explanation
Indices: 14533300--14533508 Score: 312
Period size: 43 Copynumber: 4.9 Consensus size: 43
14533290 TGAATAATAT
* * *
14533300 TATCGGGCTACGGGCCTAGCAGGCTATAATACCGATGAGATAA
1 TATCGGGCTTCGGGCCTAGCAGGCTATAATGCCGGTGAGATAA
*
14533343 TATCGGGCTTCGGGCCTAGCAGGCTATAATACCGGTGAGATAA
1 TATCGGGCTTCGGGCCTAGCAGGCTATAATGCCGGTGAGATAA
*
14533386 TATCGGGCTTCGGGCCTAGCAGGCTATAATGCCGATGAGATAA
1 TATCGGGCTTCGGGCCTAGCAGGCTATAATGCCGGTGAGATAA
* *
14533429 TATCGGGCTTCGGGCCTAGCAGGCTATAATGCCGGTGAAATGA
1 TATCGGGCTTCGGGCCTAGCAGGCTATAATGCCGGTGAGATAA
** * *
14533472 TATCGGGCTTCAAGCATAGCAGGC-AAAATGCCGGTGA
1 TATCGGGCTTCGGGCCTAGCAGGCTATAATGCCGGTGA
14533509 ATGAGTTCAG
Statistics
Matches: 155, Mismatches: 11, Indels: 1
0.93 0.07 0.01
Matches are distributed among these distances:
42 12 0.08
43 143 0.92
ACGTcount: A:0.27, C:0.21, G:0.30, T:0.22
Consensus pattern (43 bp):
TATCGGGCTTCGGGCCTAGCAGGCTATAATGCCGGTGAGATAA
Found at i:14533533 original size:41 final size:42
Alignment explanation
Indices: 14533444--14533537 Score: 104
Period size: 41 Copynumber: 2.2 Consensus size: 42
14533434 GGCTTCGGGC
* * * *
14533444 CTAGCAGGCTATAATGCCGGTGAAATGATATCGGGCTTCAAG
1 CTAGCAGGCTAAAATGCCGGTGAAATGATATCAGACTTAAAG
14533486 CATAGCAGGC-AAAATGCCGGTG-AATGAGT-TCAGACTTAAAG
1 C-TAGCAGGCTAAAATGCCGGTGAAATGA-TATCAGACTTAAAG
14533527 TCTAGCAGGCT
1 -CTAGCAGGCT
14533538 TCGTGCTGGT
Statistics
Matches: 44, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
41 22 0.50
42 14 0.32
43 8 0.18
ACGTcount: A:0.31, C:0.19, G:0.28, T:0.22
Consensus pattern (42 bp):
CTAGCAGGCTAAAATGCCGGTGAAATGATATCAGACTTAAAG
Found at i:14533590 original size:40 final size:41
Alignment explanation
Indices: 14533313--14533589 Score: 177
Period size: 43 Copynumber: 6.6 Consensus size: 41
14533303 CGGGCTACGG
* * ***
14533313 GCCTAGCAGGCTATAATACCGATGAGAT-AATATCGGGCTTCGG
1 GCCTAGCAGGCTA-AATGCCGGTGA-ATGAAT-TCGGGCTTAAA
* ***
14533356 GCCTAGCAGGCTATAATACCGGTGAGAT-AATATCGGGCTTCGG
1 GCCTAGCAGGCTA-AATGCCGGTGA-ATGAAT-TCGGGCTTAAA
* ***
14533399 GCCTAGCAGGCTATAATGCCGATGAGAT-AATATCGGGCTTCGG
1 GCCTAGCAGGCTA-AATGCCGGTGA-ATGAAT-TCGGGCTTAAA
*
14533442 GCCTAGCAGGCTATAATGCCGGTGAAATG-ATATCGGGCTTCAA
1 GCCTAGCAGGCTA-AATGCCGGTG-AATGAAT-TCGGGCTTAAA
* * * * *
14533485 GCATAGCAGGCAAAATGCCGGTGAATGAGTTCAGACTTAAA
1 GCCTAGCAGGCTAAATGCCGGTGAATGAATTCGGGCTTAAA
* *** * *
14533526 GTCTAGCAGGCTTCGTGCTGGTG-ATGAATTCGGGTTTAAA
1 GCCTAGCAGGCTAAATGCCGGTGAATGAATTCGGGCTTAAA
*
14533566 ACCTAGCAGGCTAAATGCCGGTGA
1 GCCTAGCAGGCTAAATGCCGGTGA
14533590 TTTGATAAAA
Statistics
Matches: 201, Mismatches: 29, Indels: 10
0.84 0.12 0.04
Matches are distributed among these distances:
40 30 0.15
41 28 0.14
42 11 0.05
43 131 0.65
44 1 0.00
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.23
Consensus pattern (41 bp):
GCCTAGCAGGCTAAATGCCGGTGAATGAATTCGGGCTTAAA
Found at i:14538709 original size:27 final size:28
Alignment explanation
Indices: 14538679--14538768 Score: 105
Period size: 27 Copynumber: 3.3 Consensus size: 28
14538669 TTTAGTTTAC
14538679 TAAAATTACCGAAATACCCTTAG-TTTG
1 TAAAATTACCGAAATACCCTTAGATTTG
* * *
14538706 TAAAAATACTGAAATACCC-TCGATTTG
1 TAAAATTACCGAAATACCCTTAGATTTG
* * *
14538733 TAAATTTACCGAAATA-CCTTCGACTTG
1 TAAAATTACCGAAATACCCTTAGATTTG
14538760 TAAAATTAC
1 TAAAATTAC
14538769 TAAAGTACCC
Statistics
Matches: 53, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
26 4 0.08
27 49 0.92
ACGTcount: A:0.39, C:0.19, G:0.10, T:0.32
Consensus pattern (28 bp):
TAAAATTACCGAAATACCCTTAGATTTG
Found at i:14538746 original size:54 final size:54
Alignment explanation
Indices: 14538679--14538785 Score: 137
Period size: 54 Copynumber: 2.0 Consensus size: 54
14538669 TTTAGTTTAC
* *
14538679 TAAAATTACCGAAATACCCTTAG-TTTGTAAAAATACTGAAA-TACCCTCGATTTG
1 TAAAATTACCGAAATA-CCTTAGACTTGTAAAAATACT-AAAGTACCCCCGATTTG
* * *
14538733 TAAATTTACCGAAATACCTTCGACTTGTAAAATTACTAAAGTACCCCCGATTT
1 TAAAATTACCGAAATACCTTAGACTTGTAAAAATACTAAAGTACCCCCGATTT
14538786 ACAGAATTAC
Statistics
Matches: 46, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
53 8 0.17
54 38 0.83
ACGTcount: A:0.37, C:0.21, G:0.10, T:0.32
Consensus pattern (54 bp):
TAAAATTACCGAAATACCTTAGACTTGTAAAAATACTAAAGTACCCCCGATTTG
Found at i:14538777 original size:27 final size:26
Alignment explanation
Indices: 14538703--14538778 Score: 80
Period size: 27 Copynumber: 2.8 Consensus size: 26
14538693 TACCCTTAGT
* *
14538703 TTGTAAAAATACTGAAATACCCTCGAT
1 TTGTAAAATTACT-AAATACCCTCGAC
* * *
14538730 TTGTAAATTTACCGAAATACCTTCGAC
1 TTGTAAAATTA-CTAAATACCCTCGAC
14538757 TTGTAAAATTACTAAAGTACCC
1 TTGTAAAATTACTAAA-TACCC
14538779 CCGATTTACA
Statistics
Matches: 39, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
26 4 0.10
27 34 0.87
28 1 0.03
ACGTcount: A:0.38, C:0.20, G:0.11, T:0.32
Consensus pattern (26 bp):
TTGTAAAATTACTAAATACCCTCGAC
Found at i:14538796 original size:54 final size:53
Alignment explanation
Indices: 14538681--14538797 Score: 130
Period size: 54 Copynumber: 2.2 Consensus size: 53
14538671 TAGTTTACTA
* * **
14538681 AAATTACCGAAATACCCTTAGTTTGTAAAAATACTGAAATACCCTCGATTTGT
1 AAATTACCGAAATACCCTTAGCTTGTAAAAATACTGAAATACCCCCGATTTAC
* *
14538734 AAATTTACCGAAATA-CCTTCGACTTGTAAAATTACT-AAAGTACCCCCGATTTAC
1 AAA-TTACCGAAATACCCTTAG-CTTGTAAAAATACTGAAA-TACCCCCGATTTAC
14538788 AGAATTACCG
1 A-AATTACCG
14538798 TTTTACCCCT
Statistics
Matches: 54, Mismatches: 6, Indels: 7
0.81 0.09 0.10
Matches are distributed among these distances:
53 11 0.20
54 41 0.76
55 2 0.04
ACGTcount: A:0.38, C:0.21, G:0.11, T:0.30
Consensus pattern (53 bp):
AAATTACCGAAATACCCTTAGCTTGTAAAAATACTGAAATACCCCCGATTTAC
Found at i:14538804 original size:27 final size:27
Alignment explanation
Indices: 14538774--14539200 Score: 470
Period size: 27 Copynumber: 15.8 Consensus size: 27
14538764 ATTACTAAAG
* *
14538774 TACCCCCGATTTACAGAATTACCGTTT
1 TACCCCTGATTTACATAATTACCGTTT
*
14538801 TACCCCTAATTTACATAATTACCGTTT
1 TACCCCTGATTTACATAATTACCGTTT
*
14538828 TACCCCTGATTTACATAATTACCATTT
1 TACCCCTGATTTACATAATTACCGTTT
*
14538855 TACCCCTGATTTACATAATTATCGTTT
1 TACCCCTGATTTACATAATTACCGTTT
* * *
14538882 TA-CCCTCGACTTATAGAATTACCGTTT
1 TACCCCT-GATTTACATAATTACCGTTT
*
14538909 TACCCCTAATTTACATAATTACCGTTT
1 TACCCCTGATTTACATAATTACCGTTT
*
14538936 TACCCCTGATTTACATAATTATCGTTT
1 TACCCCTGATTTACATAATTACCGTTT
* *
14538963 TA-CCCTCGACTTACAGAATTACCGTTT
1 TACCCCT-GATTTACATAATTACCGTTT
*
14538990 TACCCCTAATTTACATAATTACCGTTT
1 TACCCCTGATTTACATAATTACCGTTT
* *
14539017 TACCCCTAATTTACATAATTATCGTTT
1 TACCCCTGATTTACATAATTACCGTTT
* *
14539044 TA-CCCTCGACTTACAGAATTACCGTTT
1 TACCCCT-GATTTACATAATTACCGTTT
*
14539071 TA-CCCTCGATTTAC-TGAATTACTGTTT
1 TACCCCT-GATTTACAT-AATTACCGTTT
* * * * **
14539098 TAGCCTTGATTTATAGAATTACTATTT
1 TACCCCTGATTTACATAATTACCGTTT
* * *
14539125 TACCCTTGATTTATATAATTACTGTTT
1 TACCCCTGATTTACATAATTACCGTTT
* * *
14539152 TACCCTTGATTTACAGAATTACTGTTT
1 TACCCCTGATTTACATAATTACCGTTT
* *
14539179 TA-CCCTCGATTTGCAAAATTAC
1 TACCCCT-GATTTACATAATTAC
14539201 TAAAATACCC
Statistics
Matches: 348, Mismatches: 43, Indels: 18
0.85 0.11 0.04
Matches are distributed among these distances:
26 15 0.04
27 322 0.93
28 11 0.03
ACGTcount: A:0.27, C:0.24, G:0.08, T:0.41
Consensus pattern (27 bp):
TACCCCTGATTTACATAATTACCGTTT
Found at i:14539202 original size:81 final size:81
Alignment explanation
Indices: 14538774--14539183 Score: 531
Period size: 81 Copynumber: 5.1 Consensus size: 81
14538764 ATTACTAAAG
* * * * * *
14538774 TACCCCCGATTTACAGAATTACCGTTTTACCC-CTAATTTACATAATTACCGTTTTACCCCTGAT
1 TACCCCTGATTTACATAATTATCGTTTTACCCTC-GACTTACAGAATTACCGTTTTACCCCTGAT
*
14538838 TTACATAATTACCATTT
65 TTACATAATTACCGTTT
* *
14538855 TACCCCTGATTTACATAATTATCGTTTTACCCTCGACTTATAGAATTACCGTTTTACCCCTAATT
1 TACCCCTGATTTACATAATTATCGTTTTACCCTCGACTTACAGAATTACCGTTTTACCCCTGATT
14538920 TACATAATTACCGTTT
66 TACATAATTACCGTTT
*
14538936 TACCCCTGATTTACATAATTATCGTTTTACCCTCGACTTACAGAATTACCGTTTTACCCCTAATT
1 TACCCCTGATTTACATAATTATCGTTTTACCCTCGACTTACAGAATTACCGTTTTACCCCTGATT
14539001 TACATAATTACCGTTT
66 TACATAATTACCGTTT
*
14539017 TACCCCTAATTTACATAATTATCGTTTTACCCTCGACTTACAGAATTACCGTTTTA-CCCTCGAT
1 TACCCCTGATTTACATAATTATCGTTTTACCCTCGACTTACAGAATTACCGTTTTACCCCT-GAT
*
14539081 TTAC-TGAATTACTGTTT
65 TTACAT-AATTACCGTTT
* * * * * * * * * * *
14539098 TAGCCTTGATTTATAGAATTA-CTATTTTACCCTTGATTTATATAATTACTGTTTTACCCTTGAT
1 TACCCCTGATTTACATAATTATC-GTTTTACCCTCGACTTACAGAATTACCGTTTTACCCCTGAT
* *
14539162 TTACAGAATTACTGTTT
65 TTACATAATTACCGTTT
14539179 TACCC
1 TACCC
14539184 TCGATTTGCA
Statistics
Matches: 296, Mismatches: 27, Indels: 12
0.88 0.08 0.04
Matches are distributed among these distances:
80 6 0.02
81 286 0.97
82 4 0.01
ACGTcount: A:0.27, C:0.24, G:0.08, T:0.41
Consensus pattern (81 bp):
TACCCCTGATTTACATAATTATCGTTTTACCCTCGACTTACAGAATTACCGTTTTACCCCTGATT
TACATAATTACCGTTT
Found at i:14539354 original size:27 final size:27
Alignment explanation
Indices: 14539192--14539354 Score: 102
Period size: 27 Copynumber: 6.0 Consensus size: 27
14539182 CCTCGATTTG
*
14539192 CAAAATTACTAAAATACCCTTAGTTTG
1 CAAAATTACTAAAATACCCTTAGTTTA
** * * *
14539219 TGAAATTACCGAAAA-A-CCTTCAATTTG
1 CAAAATTA-CTAAAATACCCTT-AGTTTA
* * * *
14539246 TAAAATTACCAAAATACCCCTAATTTA
1 CAAAATTACTAAAATACCCTTAGTTTA
* *
14539273 CAAAGTTAC-AGAAATACCCTTGACTTT-
1 CAAAATTACTA-AAATACCCTT-AGTTTA
* *
14539300 CTAAAAATTA-TAGAAATACCATTGGTTTA
1 C--AAAATTACTA-AAATACCCTTAGTTTA
14539329 CAAAATTACTAAAATACCCTTAGTTT
1 CAAAATTACTAAAATACCCTTAGTTT
14539355 GTAGATTTAC
Statistics
Matches: 107, Mismatches: 18, Indels: 22
0.73 0.12 0.15
Matches are distributed among these distances:
26 10 0.09
27 62 0.58
28 17 0.16
29 18 0.17
ACGTcount: A:0.42, C:0.18, G:0.07, T:0.32
Consensus pattern (27 bp):
CAAAATTACTAAAATACCCTTAGTTTA
Found at i:14539472 original size:27 final size:27
Alignment explanation
Indices: 14539408--14539472 Score: 87
Period size: 27 Copynumber: 2.4 Consensus size: 27
14539398 ATCCCTATTA
*
14539408 GGTAAAAAGACCGTAAAGCCCCTGTAG
1 GGTAAAATGACCGTAAAGCCCCTGTAG
* *
14539435 GGTAAAGTGACCGTAATA-CCCCTGTAT
1 GGTAAAATGACCGTAA-AGCCCCTGTAG
14539462 GGTAAAATGAC
1 GGTAAAATGAC
14539473 GAATATGCCC
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
27 32 0.97
28 1 0.03
ACGTcount: A:0.35, C:0.20, G:0.25, T:0.20
Consensus pattern (27 bp):
GGTAAAATGACCGTAAAGCCCCTGTAG
Found at i:14540744 original size:20 final size:20
Alignment explanation
Indices: 14540719--14540776 Score: 98
Period size: 20 Copynumber: 2.9 Consensus size: 20
14540709 TAAATATGGT
14540719 ATGTATGATATGCACATGAA
1 ATGTATGATATGCACATGAA
* *
14540739 ATGTATGCTATGCACATGAT
1 ATGTATGATATGCACATGAA
14540759 ATGTATGATATGCACATG
1 ATGTATGATATGCACATG
14540777 TGGTAATCAT
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 35 1.00
ACGTcount: A:0.34, C:0.12, G:0.21, T:0.33
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:14540855 original size:24 final size:24
Alignment explanation
Indices: 14540828--14540970 Score: 209
Period size: 24 Copynumber: 6.0 Consensus size: 24
14540818 GAGGAAGTGA
14540828 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
14540852 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
14540876 AAAAGGGCTTATGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
*
14540899 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
* * *
14540923 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
*
14540947 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
14540971 ATGATAAAGT
Statistics
Matches: 111, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
23 23 0.21
24 77 0.69
25 11 0.10
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:14540921 original size:47 final size:47
Alignment explanation
Indices: 14540828--14540970 Score: 207
Period size: 47 Copynumber: 3.0 Consensus size: 47
14540818 GAGGAAGTGA
14540828 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTAT-AAAAGGGCTTATGCCCCAGTTATC
*
14540876 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATC
* * *
14540923 GAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTA-TAAAAG-GGCTTATGCC-CCAGTTAT
14540971 ATGATAAAGT
Statistics
Matches: 88, Mismatches: 4, Indels: 5
0.91 0.04 0.05
Matches are distributed among these distances:
47 43 0.49
48 34 0.39
49 11 0.12
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (47 bp):
AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATC
Found at i:14540944 original size:71 final size:72
Alignment explanation
Indices: 14540828--14540971 Score: 220
Period size: 71 Copynumber: 2.0 Consensus size: 72
14540818 GAGGAAGTGA
*
14540828 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAG-GGCTTATGCC-
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGGC-TAGGCCT
14540891 CCAGTTAT
65 CCAGTTAT
** * *
14540899 AAAAGGGCTTATGCCCCAGTTATTGAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGCTAGGCCTC
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGGCTAGGCCTC
14540964 CAGTTAT
66 CAGTTAT
14540971 A
1 A
14540972 TGATAAAGTA
Statistics
Matches: 66, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
71 54 0.82
72 12 0.18
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.26
Consensus pattern (72 bp):
AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGGCTAGGCCTC
CAGTTAT
Found at i:14541196 original size:31 final size:31
Alignment explanation
Indices: 14541161--14541255 Score: 181
Period size: 31 Copynumber: 3.1 Consensus size: 31
14541151 CGTTTACAGT
14541161 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
14541192 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
*
14541223 AAAGGCTTCGGCCCAGTATTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
14541254 AA
1 AA
14541256 TATGAAAAGG
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
31 63 1.00
ACGTcount: A:0.39, C:0.16, G:0.22, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:14543897 original size:44 final size:45
Alignment explanation
Indices: 14543839--14543967 Score: 162
Period size: 42 Copynumber: 3.0 Consensus size: 45
14543829 AATGTGATAT
* * *
14543839 TCGGGCCT-CGGCCTAGCAAGCTTTAA-GCTGGTGA-ATAATATTA
1 TCGGG-CTACGGCCTAGCAGGCTATAATGCCGGTGAGATAATATTA
14543882 TCGGGCTACGGGCCTAGCAGGCTATAATGCCGGTGAGAT-A-A-TA
1 TCGGGCTAC-GGCCTAGCAGGCTATAATGCCGGTGAGATAATATTA
*
14543925 TCGGGCTTCGGCCTAGCAGGCTATAATGCCGGTGAGATAATAT
1 TCGGGCTACGGCCTAGCAGGCTATAATGCCGGTGAGATAATAT
14543968 CGGGTTTCGG
Statistics
Matches: 75, Mismatches: 4, Indels: 12
0.82 0.04 0.13
Matches are distributed among these distances:
42 31 0.41
43 17 0.23
44 17 0.23
45 8 0.11
46 2 0.03
ACGTcount: A:0.25, C:0.21, G:0.29, T:0.25
Consensus pattern (45 bp):
TCGGGCTACGGCCTAGCAGGCTATAATGCCGGTGAGATAATATTA
Found at i:14543942 original size:42 final size:43
Alignment explanation
Indices: 14543880--14544018 Score: 208
Period size: 43 Copynumber: 3.3 Consensus size: 43
14543870 TGAATAATAT
*
14543880 TATCGGGCTACGGGCCTAGCAGGCTATAATGCCGGTGAGATAA
1 TATCGGGCTTCGGGCCTAGCAGGCTATAATGCCGGTGAGATAA
14543923 TATCGGGCTTC-GGCCTAGCAGGCTATAATGCCGGTGAGATAA
1 TATCGGGCTTCGGGCCTAGCAGGCTATAATGCCGGTGAGATAA
* * * * * *
14543965 TATCGGGTTTCGGGCCTAGCAGGTTATAATACAGGTGAAATGA
1 TATCGGGCTTCGGGCCTAGCAGGCTATAATGCCGGTGAGATAA
14544008 TATCGGGCTTC
1 TATCGGGCTTC
14544019 AAGCATAGCA
Statistics
Matches: 87, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
42 41 0.47
43 46 0.53
ACGTcount: A:0.24, C:0.19, G:0.31, T:0.25
Consensus pattern (43 bp):
TATCGGGCTTCGGGCCTAGCAGGCTATAATGCCGGTGAGATAA
Found at i:14543984 original size:85 final size:86
Alignment explanation
Indices: 14543839--14544018 Score: 222
Period size: 85 Copynumber: 2.1 Consensus size: 86
14543829 AATGTGATAT
* * *
14543839 TCGGGCCTCGGCCTAGCAAGCTTTAAGCTGGTGAATAATATTATCGGGCTACGGGCCTAGCAGGC
1 TCGGGCTTCGGCCTAGCAAGCTATAAGCCGGTGAATAATATTATCGGGCTACGGGCCTAGCAGGC
* * *
14543904 TATAATGCCGGTGAGATAATA
66 TATAATACAGGTGAAATAATA
* * *
14543925 TCGGGCTTCGGCCTAGCAGGCTATAATGCCGGTGAGAT-A-A-TATCGGGTTTCGGGCCTAGCAG
1 TCGGGCTTCGGCCTAGCAAGCTATAA-GCCGGTGA-ATAATATTATCGGGCTACGGGCCTAGCAG
* *
14543987 GTTATAATACAGGTGAAATGATA
64 GCTATAATACAGGTGAAATAATA
14544010 TCGGGCTTC
1 TCGGGCTTC
14544019 AAGCATAGCA
Statistics
Matches: 81, Mismatches: 11, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
85 47 0.58
86 24 0.30
87 8 0.10
88 2 0.02
ACGTcount: A:0.24, C:0.20, G:0.30, T:0.26
Consensus pattern (86 bp):
TCGGGCTTCGGCCTAGCAAGCTATAAGCCGGTGAATAATATTATCGGGCTACGGGCCTAGCAGGC
TATAATACAGGTGAAATAATA
Found at i:14544031 original size:43 final size:42
Alignment explanation
Indices: 14543839--14544018 Score: 202
Period size: 43 Copynumber: 4.2 Consensus size: 42
14543829 AATGTGATAT
* * * *
14543839 TCGGGCCTCGGCCTAGCAAGCTTTAA-GCTGGTGA-ATAATATTA
1 TCGGGCTTCGGCCTAGCAGGCTATAATGCCGGTGAGAT-A-A-TA
*
14543882 TCGGGCTACGGGCCTAGCAGGCTATAATGCCGGTGAGATAATA
1 TCGGGCTTC-GGCCTAGCAGGCTATAATGCCGGTGAGATAATA
14543925 TCGGGCTTCGGCCTAGCAGGCTATAATGCCGGTGAGATAATA
1 TCGGGCTTCGGCCTAGCAGGCTATAATGCCGGTGAGATAATA
* * * * * *
14543967 TCGGGTTTCGGGCCTAGCAGGTTATAATACAGGTGAAATGATA
1 TCGGGCTTC-GGCCTAGCAGGCTATAATGCCGGTGAGATAATA
14544010 TCGGGCTTC
1 TCGGGCTTC
14544019 AAGCATAGCA
Statistics
Matches: 120, Mismatches: 13, Indels: 8
0.85 0.09 0.06
Matches are distributed among these distances:
42 41 0.34
43 53 0.44
44 16 0.13
45 8 0.07
46 2 0.02
ACGTcount: A:0.24, C:0.20, G:0.30, T:0.26
Consensus pattern (42 bp):
TCGGGCTTCGGCCTAGCAGGCTATAATGCCGGTGAGATAATA
Found at i:14544038 original size:85 final size:85
Alignment explanation
Indices: 14543880--14544044 Score: 208
Period size: 85 Copynumber: 1.9 Consensus size: 85
14543870 TGAATAATAT
* * * * *
14543880 TATCGGGCTACGGGCCTAGCAGGCTATAATGCCGGTGAGATAATATCGGGCTTCGGCCTAGCAGG
1 TATCGGGCTACGGGCCTAGCAGGCTATAATACAGGTGAAATAATATCGGGCTTCAGCATAGCAGG
*
14543945 CTATAATGCCGGTGAGATAA
66 CTATAATGCCAGTGAGATAA
* * * *
14543965 TATCGGGTTTCGGGCCTAGCAGGTTATAATACAGGTGAAATGATATCGGGCTTCAAGCATAGCAG
1 TATCGGGCTACGGGCCTAGCAGGCTATAATACAGGTGAAATAATATCGGGCTTC-AGCATAGCAG
14544030 G-TGA-AATGCCAGTGA
65 GCT-ATAATGCCAGTGA
14544045 ATGAGTTTAG
Statistics
Matches: 68, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
85 58 0.85
86 10 0.15
ACGTcount: A:0.27, C:0.19, G:0.31, T:0.24
Consensus pattern (85 bp):
TATCGGGCTACGGGCCTAGCAGGCTATAATACAGGTGAAATAATATCGGGCTTCAGCATAGCAGG
CTATAATGCCAGTGAGATAA
Found at i:14547281 original size:28 final size:27
Alignment explanation
Indices: 14547218--14547287 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
14547208 ATAGTGAGTC
*
14547218 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
14547245 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
14547273 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
14547288 GTACAAATTT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 21 0.52
28 19 0.47
ACGTcount: A:0.30, C:0.29, G:0.14, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:14555677 original size:25 final size:25
Alignment explanation
Indices: 14555649--14555708 Score: 66
Period size: 25 Copynumber: 2.4 Consensus size: 25
14555639 CAGCACTTAT
*
14555649 GAGCATCCTGATATATGGCACTCAC
1 GAGCATCCCGATATATGGCACTCAC
* * * *
14555674 GAGCTTCCCGTTATTTGGCTCTCAC
1 GAGCATCCCGATATATGGCACTCAC
*
14555699 GAGCTTCCCG
1 GAGCATCCCG
14555709 TTAATTAGCT
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 30 1.00
ACGTcount: A:0.18, C:0.32, G:0.22, T:0.28
Consensus pattern (25 bp):
GAGCATCCCGATATATGGCACTCAC
Found at i:14555709 original size:25 final size:25
Alignment explanation
Indices: 14555664--14555727 Score: 92
Period size: 25 Copynumber: 2.6 Consensus size: 25
14555654 TCCTGATATA
* *
14555664 TGGCACTCACGAGCTTCCCGTTATT
1 TGGCTCTCACGAGCTTCCCGTTAAT
14555689 TGGCTCTCACGAGCTTCCCGTTAAT
1 TGGCTCTCACGAGCTTCCCGTTAAT
* *
14555714 TAGCTCTCATGAGC
1 TGGCTCTCACGAGC
14555728 ATCTTGATTA
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 35 1.00
ACGTcount: A:0.17, C:0.31, G:0.20, T:0.31
Consensus pattern (25 bp):
TGGCTCTCACGAGCTTCCCGTTAAT
Found at i:14555829 original size:25 final size:25
Alignment explanation
Indices: 14555801--14555853 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 25
14555791 TCGTATGAGA
**
14555801 TTCTTGATATTTGGCTCACAAGAGC
1 TTCTTGATACATGGCTCACAAGAGC
* *
14555826 TTCTTGTTACATGGCTCACATGAGC
1 TTCTTGATACATGGCTCACAAGAGC
14555851 TTC
1 TTC
14555854 CCATTATATG
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.21, C:0.23, G:0.19, T:0.38
Consensus pattern (25 bp):
TTCTTGATACATGGCTCACAAGAGC
Found at i:14555864 original size:25 final size:25
Alignment explanation
Indices: 14555812--14555889 Score: 77
Period size: 25 Copynumber: 3.1 Consensus size: 25
14555802 TCTTGATATT
***
14555812 TGGCTCACAAGAGCTTCTTGTTACA
1 TGGCTCACAAGAGCTTCCCATTACA
* *
14555837 TGGCTCACATGAGCTTCCCATTATA
1 TGGCTCACAAGAGCTTCCCATTACA
*
14555862 TGGCTCA-AAGGAGCTTTCCGATTACA
1 TGGCTCACAA-GAGC-TTCCCATTACA
14555888 TG
1 TG
14555890 CTTGCATAGG
Statistics
Matches: 43, Mismatches: 8, Indels: 3
0.80 0.15 0.06
Matches are distributed among these distances:
24 1 0.02
25 31 0.72
26 11 0.26
ACGTcount: A:0.24, C:0.24, G:0.21, T:0.31
Consensus pattern (25 bp):
TGGCTCACAAGAGCTTCCCATTACA
Found at i:14558868 original size:52 final size:52
Alignment explanation
Indices: 14558805--14558908 Score: 181
Period size: 52 Copynumber: 2.0 Consensus size: 52
14558795 ATATGTATGC
*
14558805 GGCATCCGAGCTCGTTGAGTTGGTCCGAGTTCATAATGGATGCGATACATGT
1 GGCATCCGAGCTCGTTGAGTTGGTCCGAGTTCATAATGGATGCAATACATGT
* *
14558857 GGCATCTGAGCTCGTTGAGTTGGTCTGAGTTCATAATGGATGCAATACATGT
1 GGCATCCGAGCTCGTTGAGTTGGTCCGAGTTCATAATGGATGCAATACATGT
14558909 AATTGGGTTC
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
52 49 1.00
ACGTcount: A:0.22, C:0.17, G:0.30, T:0.31
Consensus pattern (52 bp):
GGCATCCGAGCTCGTTGAGTTGGTCCGAGTTCATAATGGATGCAATACATGT
Found at i:14562862 original size:13 final size:14
Alignment explanation
Indices: 14562844--14562872 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
14562834 AATGCATTCA
14562844 TTAGTTAA-TTTAG
1 TTAGTTAATTTTAG
14562857 TTAGTTAATTTTAG
1 TTAGTTAATTTTAG
14562871 TT
1 TT
14562873 TTAATCAATC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.53
14 7 0.47
ACGTcount: A:0.28, C:0.00, G:0.14, T:0.59
Consensus pattern (14 bp):
TTAGTTAATTTTAG
Found at i:14564744 original size:29 final size:29
Alignment explanation
Indices: 14564711--14564813 Score: 152
Period size: 29 Copynumber: 3.6 Consensus size: 29
14564701 CCTTCGAGCT
** * *
14564711 CGCACACCCAGTGCCGTATTTTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
* *
14564740 TGCACATTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
14564769 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
14564798 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
14564814 ATCTCGTCAC
Statistics
Matches: 66, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 66 1.00
ACGTcount: A:0.25, C:0.32, G:0.16, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:14564745 original size:58 final size:58
Alignment explanation
Indices: 14564682--14564813 Score: 156
Period size: 58 Copynumber: 2.3 Consensus size: 58
14564672 AATTTAAGCC
* * * * * *
14564682 CGCACACATAGTGCCATACCCTTCGAGCTCGCACACCCAGTGCCGTATTTTTCCAGCA
1 CGCACACTTAGTGCCATACACTTCCAGCACGCACACCCAGTGCCATATATTTCCAGCA
* * * * **
14564740 TGCACATTTAGTGCCATATATTTCCAGCACGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATACACTTCCAGCACGCACACCCAGTGCCATATATTTCCAGCA
14564798 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
14564814 ATCTCGTCAC
Statistics
Matches: 60, Mismatches: 14, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
58 60 1.00
ACGTcount: A:0.25, C:0.33, G:0.16, T:0.26
Consensus pattern (58 bp):
CGCACACTTAGTGCCATACACTTCCAGCACGCACACCCAGTGCCATATATTTCCAGCA
Found at i:14579341 original size:24 final size:25
Alignment explanation
Indices: 14579298--14579346 Score: 66
Period size: 24 Copynumber: 2.0 Consensus size: 25
14579288 TAACTTTTAA
*
14579298 ATATTTTTAATAATTATAAT-TTTT
1 ATATTTTTAATAAATATAATATTTT
14579322 ATATTTTTAATAAA-ATTAATATTTT
1 ATATTTTTAATAAATA-TAATATTTT
14579347 TAATAAATTT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
23 1 0.05
24 17 0.77
25 4 0.18
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (25 bp):
ATATTTTTAATAAATATAATATTTT
Found at i:14579365 original size:18 final size:18
Alignment explanation
Indices: 14579313--14579366 Score: 72
Period size: 18 Copynumber: 2.9 Consensus size: 18
14579303 TTTAATAATT
*
14579313 ATAATTTTTATATTTTTA
1 ATAAATTTTATATTTTTA
* *
14579331 ATAAAATTAATATTTTTA
1 ATAAATTTTATATTTTTA
14579349 ATAAATTTTATACTTTTT
1 ATAAATTTTATA-TTTTT
14579367 TTATATTTCT
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
18 25 0.83
19 5 0.17
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (18 bp):
ATAAATTTTATATTTTTA
Found at i:14579466 original size:10 final size:10
Alignment explanation
Indices: 14579453--14579575 Score: 69
Period size: 10 Copynumber: 12.0 Consensus size: 10
14579443 TTTATTTATT
14579453 ATAATTTTTA
1 ATAATTTTTA
14579463 ATAAATTTTGT-
1 AT-AATTTT-TA
*
14579474 ATATATTTTAA
1 ATA-ATTTTTA
*
14579485 ATAATTTTAA
1 ATAATTTTTA
14579495 ATAATTTTATTA
1 ATAA-TTT-TTA
*
14579507 TATTATTTTT-
1 -ATAATTTTTA
* *
14579517 CTAAATTTTA
1 ATAATTTTTA
14579527 ATTAA-TTTTA
1 A-TAATTTTTA
14579537 ATATATTTTT-
1 ATA-ATTTTTA
14579547 ATATATTTTT-
1 ATA-ATTTTTA
14579557 A-AATTTTTA
1 ATAATTTTTA
*
14579566 ATAAATTTTA
1 ATAATTTTTA
14579576 TATTTTTCTA
Statistics
Matches: 92, Mismatches: 8, Indels: 26
0.73 0.06 0.21
Matches are distributed among these distances:
8 6 0.07
9 10 0.11
10 39 0.42
11 28 0.30
12 6 0.07
13 3 0.03
ACGTcount: A:0.39, C:0.01, G:0.01, T:0.59
Consensus pattern (10 bp):
ATAATTTTTA
Found at i:14579487 original size:22 final size:20
Alignment explanation
Indices: 14579452--14579503 Score: 59
Period size: 21 Copynumber: 2.5 Consensus size: 20
14579442 TTTTATTTAT
*
14579452 TATAATTTTTAATAAATTTTG
1 TATAATTTTAAAT-AATTTTG
*
14579473 TATATATTTTAAATAATTTTA
1 TATA-ATTTTAAATAATTTTG
*
14579494 AATAATTTTA
1 TATAATTTTA
14579504 TTATATTATT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
20 6 0.22
21 13 0.48
22 8 0.30
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (20 bp):
TATAATTTTAAATAATTTTG
Found at i:14579533 original size:43 final size:39
Alignment explanation
Indices: 14579478--14579575 Score: 110
Period size: 39 Copynumber: 2.4 Consensus size: 39
14579468 TTTTGTATAT
*
14579478 ATTTTAAATAATTTTAAATA-ATTTTATTATATTATTTTTCTAA
1 ATTTTAATTAATTTTAAATATA-TTT-TTATA-TA-TTTT-TAA
14579521 ATTTTAATTAATTTT-AATATATTTTTATATATTTTTAA
1 ATTTTAATTAATTTTAAATATATTTTTATATATTTTTAA
*
14579559 ATTTTTAATAAATTTTA
1 A-TTTTAATTAATTTTA
14579576 TATTTTTCTA
Statistics
Matches: 50, Mismatches: 2, Indels: 9
0.82 0.03 0.15
Matches are distributed among these distances:
38 4 0.08
39 17 0.34
40 2 0.04
41 5 0.10
42 7 0.14
43 15 0.30
ACGTcount: A:0.39, C:0.01, G:0.00, T:0.60
Consensus pattern (39 bp):
ATTTTAATTAATTTTAAATATATTTTTATATATTTTTAA
Found at i:14579574 original size:18 final size:18
Alignment explanation
Indices: 14579518--14579582 Score: 60
Period size: 18 Copynumber: 3.5 Consensus size: 18
14579508 ATTATTTTTC
*
14579518 TAAA-TTTTAATTAATTT
1 TAAATTTTTAATAAATTT
* *
14579535 TAATATATTTTTATATATTTT
1 TAA-AT-TTTTAATA-AATTT
14579556 TAAATTTTTAATAAATTT
1 TAAATTTTTAATAAATTT
*
14579574 TATATTTTT
1 TAAATTTTT
14579583 CTAGATTTAT
Statistics
Matches: 38, Mismatches: 6, Indels: 7
0.75 0.12 0.14
Matches are distributed among these distances:
17 3 0.08
18 13 0.34
19 7 0.18
20 8 0.21
21 7 0.18
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (18 bp):
TAAATTTTTAATAAATTT
Found at i:14579590 original size:28 final size:28
Alignment explanation
Indices: 14579532--14579618 Score: 79
Period size: 30 Copynumber: 3.0 Consensus size: 28
14579522 TTTTAATTAA
* *
14579532 TTTTAATATATTTTTATATATTTT-TAAAT
1 TTTTAATA-AATTTTATAT-TTTTCTAGAT
14579561 TTTTAATAAATTTTATATTTTTCTAGATT
1 TTTTAATAAATTTTATATTTTTCTAGA-T
* * *
14579590 TATTTTATAACTTTTATTTTTTTCT-GAT
1 T-TTTAATAAATTTTATATTTTTCTAGAT
14579618 T
1 T
14579619 ATTATTATTA
Statistics
Matches: 50, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
27 4 0.08
28 14 0.28
29 12 0.24
30 20 0.40
ACGTcount: A:0.29, C:0.03, G:0.02, T:0.66
Consensus pattern (28 bp):
TTTTAATAAATTTTATATTTTTCTAGAT
Found at i:14579633 original size:29 final size:30
Alignment explanation
Indices: 14579561--14579626 Score: 82
Period size: 30 Copynumber: 2.2 Consensus size: 30
14579551 ATTTTTAAAT
*
14579561 TTTTAATAAATTTTATATTTTTCTAGATTTA
1 TTTT-ATAACTTTTATATTTTTCTAGATTTA
*
14579592 TTTTATAACTTTTATTTTTTTCT-GA-TTA
1 TTTTATAACTTTTATATTTTTCTAGATTTA
14579620 TTATTAT
1 TT-TTAT
14579627 TATTTTTGAA
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
28 5 0.16
29 6 0.19
30 17 0.53
31 4 0.12
ACGTcount: A:0.27, C:0.05, G:0.03, T:0.65
Consensus pattern (30 bp):
TTTTATAACTTTTATATTTTTCTAGATTTA
Found at i:14580009 original size:21 final size:22
Alignment explanation
Indices: 14579969--14580016 Score: 68
Period size: 19 Copynumber: 2.4 Consensus size: 22
14579959 ACCTAAATAT
14579969 TATAAAATATTCAAATAAAAAA
1 TATAAAATATTCAAATAAAAAA
14579991 TATAAAA-ATTC--ATAAAAAA
1 TATAAAATATTCAAATAAAAAA
14580010 T-TAAAAT
1 TATAAAAT
14580017 TTAACATGAA
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
18 5 0.20
19 9 0.36
21 4 0.16
22 7 0.28
ACGTcount: A:0.67, C:0.04, G:0.00, T:0.29
Consensus pattern (22 bp):
TATAAAATATTCAAATAAAAAA
Found at i:14580090 original size:23 final size:22
Alignment explanation
Indices: 14580064--14580113 Score: 57
Period size: 23 Copynumber: 2.2 Consensus size: 22
14580054 ATTAATATTT
*
14580064 TAATTAATT-TTTCTGTTAAAAAA
1 TAATTAATTATTT-T-TCAAAAAA
14580087 TAATTTAATTATTTTTCAAAAAA
1 TAA-TTAATTATTTTTCAAAAAA
14580110 TAAT
1 TAAT
14580114 GATTAAATTT
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
22 1 0.04
23 13 0.54
24 7 0.29
25 3 0.12
ACGTcount: A:0.46, C:0.04, G:0.02, T:0.48
Consensus pattern (22 bp):
TAATTAATTATTTTTCAAAAAA
Found at i:14587931 original size:22 final size:22
Alignment explanation
Indices: 14587885--14587940 Score: 60
Period size: 22 Copynumber: 2.5 Consensus size: 22
14587875 TGTTATCAAT
* *
14587885 TATCTGCTTATTTTAAGACTTG
1 TATCTGATTATTTTAAGACTAG
14587907 TATCTGATATATTTTAAG-CTAG
1 TATCTGAT-TATTTTAAGACTAG
*
14587929 TATTCTTATTAT
1 TA-TCTGATTAT
14587941 CTAATGTATT
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
22 15 0.52
23 14 0.48
ACGTcount: A:0.27, C:0.11, G:0.11, T:0.52
Consensus pattern (22 bp):
TATCTGATTATTTTAAGACTAG
Found at i:14589767 original size:27 final size:26
Alignment explanation
Indices: 14589723--14589786 Score: 83
Period size: 27 Copynumber: 2.4 Consensus size: 26
14589713 CTCGAAAAAA
*
14589723 TTATTATTTTATCAATAAATTAATATT
1 TTATTAATTTATCAATAAATTAATA-T
* * *
14589750 TTTTTAATTTATCGATAAGTTAATAT
1 TTATTAATTTATCAATAAATTAATAT
14589776 TTATTAATTTA
1 TTATTAATTTA
14589787 GTAATTTTTT
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
26 11 0.34
27 21 0.66
ACGTcount: A:0.38, C:0.03, G:0.03, T:0.56
Consensus pattern (26 bp):
TTATTAATTTATCAATAAATTAATAT
Found at i:14592910 original size:20 final size:20
Alignment explanation
Indices: 14592887--14592948 Score: 72
Period size: 20 Copynumber: 3.1 Consensus size: 20
14592877 TAACATGTAA
14592887 ATTATTTTTATAATATTTTT
1 ATTATTTTTATAATATTTTT
*
14592907 ATTATATTTTAGAA-ATTTTT
1 ATTAT-TTTTATAATATTTTT
* **
14592927 ATGATTTAAATAATATTTTT
1 ATTATTTTTATAATATTTTT
14592947 AT
1 AT
14592949 AGCTTTATAA
Statistics
Matches: 35, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
19 5 0.14
20 23 0.66
21 7 0.20
ACGTcount: A:0.35, C:0.00, G:0.03, T:0.61
Consensus pattern (20 bp):
ATTATTTTTATAATATTTTT
Found at i:14592955 original size:21 final size:20
Alignment explanation
Indices: 14592898--14592963 Score: 55
Period size: 20 Copynumber: 3.2 Consensus size: 20
14592888 TTATTTTTAT
* * *
14592898 AATATTTTTATTATATTTTAG
1 AATATTTTTATGAT-TTATAA
14592919 AA-ATTTTTATGATTTA-AA
1 AATATTTTTATGATTTATAA
*
14592937 TAATATTTTTATAGCTTTATAA
1 -AATATTTTTAT-GATTTATAA
14592959 AATAT
1 AATAT
14592964 ATATAAATTT
Statistics
Matches: 37, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
18 1 0.03
19 4 0.11
20 18 0.49
21 12 0.32
22 2 0.05
ACGTcount: A:0.39, C:0.02, G:0.05, T:0.55
Consensus pattern (20 bp):
AATATTTTTATGATTTATAA
Found at i:14596715 original size:19 final size:19
Alignment explanation
Indices: 14596691--14596731 Score: 82
Period size: 19 Copynumber: 2.2 Consensus size: 19
14596681 AACGTCCCTT
14596691 AAATGGACCCTCGAAGCCC
1 AAATGGACCCTCGAAGCCC
14596710 AAATGGACCCTCGAAGCCC
1 AAATGGACCCTCGAAGCCC
14596729 AAA
1 AAA
14596732 ACGAGTATTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.37, C:0.34, G:0.20, T:0.10
Consensus pattern (19 bp):
AAATGGACCCTCGAAGCCC
Found at i:14598124 original size:58 final size:57
Alignment explanation
Indices: 14598019--14598127 Score: 139
Period size: 58 Copynumber: 1.9 Consensus size: 57
14598009 TCTTATTTCC
* * * **
14598019 AACATATGCTCACAAGAGCTTAATCAGGATTACCCGTTCGGGTTAAATCCTATCTAT
1 AACATATGCTCACAAGAGCTTAATCAGGATTACCAGTCCAGACTAAATCCTATCTAT
*
14598076 AACATATGCTCA-AGAGGGCTTATATCAGGATTACCAGTCCAGACTAAATCCT
1 AACATATGCTCACA-AGAGCTTA-ATCAGGATTACCAGTCCAGACTAAATCCT
14598128 TTCTGTAATG
Statistics
Matches: 44, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
56 1 0.02
57 19 0.43
58 24 0.55
ACGTcount: A:0.33, C:0.23, G:0.17, T:0.28
Consensus pattern (57 bp):
AACATATGCTCACAAGAGCTTAATCAGGATTACCAGTCCAGACTAAATCCTATCTAT
Found at i:14601264 original size:19 final size:20
Alignment explanation
Indices: 14601242--14601284 Score: 56
Period size: 19 Copynumber: 2.3 Consensus size: 20
14601232 ATGTAGGGCC
14601242 CACGAGCCCAT-TGGGCCCA
1 CACGAGCCCATCTGGGCCCA
*
14601261 CACGA-CCCATCTTGGCCCA
1 CACGAGCCCATCTGGGCCCA
14601280 -ACGAG
1 CACGAG
14601285 GTCCATAACG
Statistics
Matches: 21, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
18 9 0.43
19 12 0.57
ACGTcount: A:0.23, C:0.42, G:0.23, T:0.12
Consensus pattern (20 bp):
CACGAGCCCATCTGGGCCCA
Found at i:14601283 original size:18 final size:18
Alignment explanation
Indices: 14601237--14601284 Score: 55
Period size: 19 Copynumber: 2.7 Consensus size: 18
14601227 TATCCATGTA
14601237 GGGCCC-ACGAGCCCATT
1 GGGCCCAACGAGCCCATT
14601254 GGGCCCACACGA-CCCATCT
1 GGGCCCA-ACGAGCCCAT-T
*
14601273 TGGCCCAACGAG
1 GGGCCCAACGAG
14601285 GTCCATAACG
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
17 6 0.23
18 9 0.35
19 11 0.42
ACGTcount: A:0.21, C:0.42, G:0.27, T:0.10
Consensus pattern (18 bp):
GGGCCCAACGAGCCCATT
Done.