Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr02 99090824
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 99090824
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 317 characters in sequence are not A, C, G, or T
File 52 of 318
Found at i:14610258 original size:39 final size:40
Alignment explanation
Indices: 14610158--14610339 Score: 176
Period size: 40 Copynumber: 4.6 Consensus size: 40
14610148 TCGAATGATG
* * *
14610158 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGC-AAGTTACTAAA
* * * *
14610198 TCCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTCGTGCAAGTTACTAAA
14610238 TCCGGGCTAAG-CCCGAAGGCATT-GTGCAAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCAAGTTACTAAA
* * * **
14610276 CCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCGCTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCAAGTTACTA-AA
**
14610317 -CCGGGCTTCGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
14610340 TGAGCGAGTC
Statistics
Matches: 117, Mismatches: 19, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
38 22 0.19
39 23 0.20
40 63 0.54
41 9 0.08
ACGTcount: A:0.24, C:0.25, G:0.28, T:0.23
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCAAGTTACTAAA
Found at i:14610303 original size:78 final size:80
Alignment explanation
Indices: 14610158--14610339 Score: 210
Period size: 78 Copynumber: 2.3 Consensus size: 80
14610148 TCGAATGATG
* * * *
14610158 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATTC
1 TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
14610223 GTGCGAGTTAATAAA
66 GTGCGAGTTAATAAA
* **
14610238 TCCGGGCTAAG-CCCGAAGGCATTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCATT
***
14610300 CGTGCGAGTCGCTATAA
65 CGTGCGAGTTAATA-AA
**
14610317 -CCGGGCTTCGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
14610340 TGAGCGAGTC
Statistics
Matches: 87, Mismatches: 12, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
77 1 0.01
78 46 0.53
79 29 0.33
80 11 0.13
ACGTcount: A:0.24, C:0.25, G:0.28, T:0.23
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
GTGCGAGTTAATAAA
Found at i:14618126 original size:35 final size:35
Alignment explanation
Indices: 14618087--14618157 Score: 117
Period size: 35 Copynumber: 2.0 Consensus size: 35
14618077 CATCTCCAGA
*
14618087 GCTTGGCAAATATGGAAAGTA-ATCTTCAAAGATAT
1 GCTTGGCAAATATGG-AAGGAGATCTTCAAAGATAT
14618122 GCTTGGCAAATATGGAAGGAGATCTTCAAAGATAT
1 GCTTGGCAAATATGGAAGGAGATCTTCAAAGATAT
14618157 G
1 G
14618158 TGATCCTAGA
Statistics
Matches: 34, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
34 4 0.12
35 30 0.88
ACGTcount: A:0.38, C:0.11, G:0.24, T:0.27
Consensus pattern (35 bp):
GCTTGGCAAATATGGAAGGAGATCTTCAAAGATAT
Found at i:14625614 original size:27 final size:28
Alignment explanation
Indices: 14625584--14625641 Score: 82
Period size: 29 Copynumber: 2.1 Consensus size: 28
14625574 TCTGTGTATT
14625584 TGTGAAA-TAGGGACTAAACTGTAAAAA
1 TGTGAAACTAGGGACTAAACTGTAAAAA
* *
14625611 TGTGAAACTTAGGGGCTAAAGTGTAAAAA
1 TGTGAAAC-TAGGGACTAAACTGTAAAAA
14625640 TG
1 TG
14625642 CCCAAATATG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
27 7 0.26
29 20 0.74
ACGTcount: A:0.43, C:0.07, G:0.26, T:0.24
Consensus pattern (28 bp):
TGTGAAACTAGGGACTAAACTGTAAAAA
Found at i:14626029 original size:43 final size:43
Alignment explanation
Indices: 14625981--14626151 Score: 150
Period size: 43 Copynumber: 4.0 Consensus size: 43
14625971 GTTACCGAGA
* *
14625981 TGTGATTACATGTAAGATCATATCTGGGACATTGGCATTGTAT
1 TGTGATTACATGTAAGACCATATCTGGGACATTGGCATCGTAT
* * *
14626024 TGTGATTACGTGTAAGACCATGTCTGGGACATTGGCGTCGTTAT
1 TGTGATTACATGTAAGACCATATCTGGGACATTGGCATCG-TAT
* *** * * * *
14626068 T-CGATTTTGTGTAAGACCCTGTCTGGGACAATGGTATCG-AT
1 TGTGATTACATGTAAGACCATATCTGGGACATTGGCATCGTAT
* * * *
14626109 ATGTGATAACATGTAATACCATATCTGGGATA-TGGCATTGTAT
1 -TGTGATTACATGTAAGACCATATCTGGGACATTGGCATCGTAT
14626152 GAGCTTTATG
Statistics
Matches: 101, Mismatches: 23, Indels: 8
0.77 0.17 0.06
Matches are distributed among these distances:
41 2 0.02
42 7 0.07
43 88 0.87
44 4 0.04
ACGTcount: A:0.26, C:0.14, G:0.25, T:0.35
Consensus pattern (43 bp):
TGTGATTACATGTAAGACCATATCTGGGACATTGGCATCGTAT
Found at i:14639041 original size:42 final size:42
Alignment explanation
Indices: 14638982--14639065 Score: 168
Period size: 42 Copynumber: 2.0 Consensus size: 42
14638972 GGTAAGGTTC
14638982 TTAACCCTTCTGTATACATGAAAGTTAAGGAAATGAAGTTAT
1 TTAACCCTTCTGTATACATGAAAGTTAAGGAAATGAAGTTAT
14639024 TTAACCCTTCTGTATACATGAAAGTTAAGGAAATGAAGTTAT
1 TTAACCCTTCTGTATACATGAAAGTTAAGGAAATGAAGTTAT
14639066 GGACTTCAGA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.38, C:0.12, G:0.17, T:0.33
Consensus pattern (42 bp):
TTAACCCTTCTGTATACATGAAAGTTAAGGAAATGAAGTTAT
Found at i:14639966 original size:33 final size:33
Alignment explanation
Indices: 14639893--14639997 Score: 99
Period size: 33 Copynumber: 3.2 Consensus size: 33
14639883 TGGCATCCAT
* * * *
14639893 AGAGATAGTCTATTAGGAT-GTAAACACAGAAC
1 AGAGATAGTCTGTTGGGATAGCAAACACAAAAC
* *
14639925 AGATATAGTCTGTTGGGATAGCAAACACAAAAT
1 AGAGATAGTCTGTTGGGATAGCAAACACAAAAC
* *
14639958 AGAGATAGT-TAGCTGGGATAGTGAAA-ACAAAAC
1 AGAGATAGTCT-GTTGGGATAG-CAAACACAAAAC
14639991 AGAGATA
1 AGAGATA
14639998 ACTCACTGGG
Statistics
Matches: 60, Mismatches: 10, Indels: 5
0.80 0.13 0.07
Matches are distributed among these distances:
32 17 0.28
33 40 0.67
34 3 0.05
ACGTcount: A:0.45, C:0.10, G:0.24, T:0.21
Consensus pattern (33 bp):
AGAGATAGTCTGTTGGGATAGCAAACACAAAAC
Found at i:14642374 original size:15 final size:15
Alignment explanation
Indices: 14642350--14642379 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
14642340 AGTGTTTACA
14642350 CCTAAAAAATGGATG
1 CCTAAAAAATGGATG
*
14642365 CCTAATAAATGGATG
1 CCTAAAAAATGGATG
14642380 ATTATCTCGT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.43, C:0.13, G:0.20, T:0.23
Consensus pattern (15 bp):
CCTAAAAAATGGATG
Found at i:14642689 original size:27 final size:27
Alignment explanation
Indices: 14642651--14642743 Score: 118
Period size: 27 Copynumber: 3.4 Consensus size: 27
14642641 ATACCACAGA
14642651 TCACCCAACTATTGCCCTTTTTATTTG
1 TCACCCAACTATTGCCCTTTTTATTTG
**
14642678 TCACCCAACTA-T-CATTTTTTTAATTTGG
1 TCACCCAACTATTGC-CCTTTTT-ATTT-G
*
14642706 TCACCCAACTATTGCCCTTTTTTTTTG
1 TCACCCAACTATTGCCCTTTTTATTTG
14642733 TCACCCAACTA
1 TCACCCAACTA
14642744 ATCCAAATTG
Statistics
Matches: 56, Mismatches: 5, Indels: 10
0.79 0.07 0.14
Matches are distributed among these distances:
25 1 0.02
26 6 0.11
27 27 0.48
28 15 0.27
29 6 0.11
30 1 0.02
ACGTcount: A:0.22, C:0.29, G:0.06, T:0.43
Consensus pattern (27 bp):
TCACCCAACTATTGCCCTTTTTATTTG
Found at i:14643872 original size:41 final size:41
Alignment explanation
Indices: 14643815--14643899 Score: 161
Period size: 41 Copynumber: 2.1 Consensus size: 41
14643805 ACATTTAAAA
*
14643815 TTAAAATTGTGTATCTAGTCTGCTATCGTAGCACGTTTATC
1 TTAAAATTGTGTATCTAGTCTGCTATCATAGCACGTTTATC
14643856 TTAAAATTGTGTATCTAGTCTGCTATCATAGCACGTTTATC
1 TTAAAATTGTGTATCTAGTCTGCTATCATAGCACGTTTATC
14643897 TTA
1 TTA
14643900 GTCTACAATT
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 43 1.00
ACGTcount: A:0.26, C:0.16, G:0.15, T:0.42
Consensus pattern (41 bp):
TTAAAATTGTGTATCTAGTCTGCTATCATAGCACGTTTATC
Found at i:14652890 original size:30 final size:30
Alignment explanation
Indices: 14652856--14652916 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
14652846 TCCTTAACTC
14652856 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
14652886 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
14652916 A
1 A
14652917 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:14655288 original size:2 final size:2
Alignment explanation
Indices: 14655281--14655309 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
14655271 GAGACTAGTC
14655281 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
14655310 CATGTCATGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:14657330 original size:30 final size:30
Alignment explanation
Indices: 14657294--14657354 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
14657284 TCCTTAACTC
14657294 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
14657324 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
14657354 A
1 A
14657355 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:14660859 original size:22 final size:21
Alignment explanation
Indices: 14660834--14660874 Score: 64
Period size: 22 Copynumber: 1.9 Consensus size: 21
14660824 TCGAATTAGT
*
14660834 CACACGGGTGTGTTGCCCCTCC
1 CACACGAGTGTG-TGCCCCTCC
14660856 CACACGAGTGTGTGCCCCT
1 CACACGAGTGTGTGCCCCT
14660875 GTATCTAGTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 7 0.39
22 11 0.61
ACGTcount: A:0.12, C:0.39, G:0.27, T:0.22
Consensus pattern (21 bp):
CACACGAGTGTGTGCCCCTCC
Found at i:14662950 original size:24 final size:24
Alignment explanation
Indices: 14662923--14662972 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
14662913 TGGAGAATCG
14662923 TGTCTCTATAAACATTTGGAATGA
1 TGTCTCTATAAACATTTGGAATGA
14662947 TGTCTCTATAAACATTTGGAATGA
1 TGTCTCTATAAACATTTGGAATGA
14662971 TG
1 TG
14662973 CATGCCTTTC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.32, C:0.12, G:0.18, T:0.38
Consensus pattern (24 bp):
TGTCTCTATAAACATTTGGAATGA
Found at i:14664183 original size:38 final size:38
Alignment explanation
Indices: 14664092--14664295 Score: 246
Period size: 38 Copynumber: 5.3 Consensus size: 38
14664082 CAAGGTATAA
* * * * *
14664092 AACCCGAACATAACACCAGCACGAAGCCTACGGGTCTTT
1 AACCCGGATATAATACCAGCACGAAGCCTGCGGG-ATTT
* * * *
14664131 AAACTCAGATATAATACCAGCACTAGGCCTGCGGGATTT
1 -AACCCGGATATAATACCAGCACGAAGCCTGCGGGATTT
14664170 AACCCGGATATAATACCAGCACGAAGCCTGCGGGATTT
1 AACCCGGATATAATACCAGCACGAAGCCTGCGGGATTT
14664208 AACCCGGATATAATACCAGCACGAAGCCTGCGGGATTT
1 AACCCGGATATAATACCAGCACGAAGCCTGCGGGATTT
* ** **
14664246 AACCCGGATATAATTCCAGCATAAAGCCTGCGAGTCTTT
1 AACCCGGATATAATACCAGCACGAAGCCTGCG-GGATTT
14664285 AAGCCCGGATA
1 AA-CCCGGATA
14664296 CACATCAGAT
Statistics
Matches: 144, Mismatches: 18, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
38 101 0.70
39 9 0.06
40 34 0.24
ACGTcount: A:0.32, C:0.27, G:0.21, T:0.20
Consensus pattern (38 bp):
AACCCGGATATAATACCAGCACGAAGCCTGCGGGATTT
Found at i:14666150 original size:57 final size:58
Alignment explanation
Indices: 14666078--14666186 Score: 157
Period size: 57 Copynumber: 1.9 Consensus size: 58
14666068 GCCCACTGAA
* *
14666078 CGATCTCGCACACATAGTGCTCGGTT-GAAGAACTCGCACACACAGTGCCTCAATTAT
1 CGATCTCGCACACATAGTGCTCAGTTAAAAGAACTCGCACACACAGTGCCTCAATTAT
* * * *
14666135 CGATTTCGCACACATAGTGCTCAGTTAAAAGAATTTGCACACATAGTGCCTC
1 CGATCTCGCACACATAGTGCTCAGTTAAAAGAACTCGCACACACAGTGCCTC
14666187 TAATCATTCG
Statistics
Matches: 45, Mismatches: 6, Indels: 1
0.87 0.12 0.02
Matches are distributed among these distances:
57 24 0.53
58 21 0.47
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.25
Consensus pattern (58 bp):
CGATCTCGCACACATAGTGCTCAGTTAAAAGAACTCGCACACACAGTGCCTCAATTAT
Found at i:14666174 original size:29 final size:28
Alignment explanation
Indices: 14666085--14666183 Score: 92
Period size: 29 Copynumber: 3.5 Consensus size: 28
14666075 GAACGATCTC
* * * *
14666085 GCACACATAGTGCTCGGTTGAAGAACTC
1 GCACACATAGTGCTCAGTTAAAGAATTT
* * **
14666113 GCACACACAGTGCCTCAATTATCG-ATTT
1 GCACACATAGTG-CTCAGTTAAAGAATTT
14666141 CGCACACATAGTGCTCAGTTAAAAGAATTT
1 -GCACACATAGTGCTCAGTT-AAAGAATTT
14666171 GCACACATAGTGC
1 GCACACATAGTGC
14666184 CTCTAATCAT
Statistics
Matches: 55, Mismatches: 12, Indels: 7
0.74 0.16 0.09
Matches are distributed among these distances:
28 19 0.35
29 32 0.58
30 4 0.07
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.24
Consensus pattern (28 bp):
GCACACATAGTGCTCAGTTAAAGAATTT
Found at i:14668053 original size:38 final size:38
Alignment explanation
Indices: 14667943--14668142 Score: 217
Period size: 38 Copynumber: 5.3 Consensus size: 38
14667933 CAAGGTATAA
* * * * *
14667943 AACCCGAACATAACACCAGCACGAAGCCTACGGGTCTTT
1 AACCCGGATATAATACCAGCACGAAGCCTGCGGG-ATTT
* * *
14667982 AAACTCAGATATAATA-CAGCAC-TAGCCTGCGGGATTT
1 -AACCCGGATATAATACCAGCACGAAGCCTGCGGGATTT
14668019 AACCCGGATATAATACCAGCACGAAGCCTGCGGGATTT
1 AACCCGGATATAATACCAGCACGAAGCCTGCGGGATTT
*
14668057 AACCCAGATATAATACCAGCACGAAGCCTGCGGGATTT
1 AACCCGGATATAATACCAGCACGAAGCCTGCGGGATTT
* * ** * *
14668095 AACCTGGATAT-ATTCCAGCATAAAGCCTGCGAGTTTT
1 AACCCGGATATAATACCAGCACGAAGCCTGCGGGATTT
14668132 AAGCCCGGATA
1 AA-CCCGGATA
14668143 CACATCAAAT
Statistics
Matches: 137, Mismatches: 20, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
36 13 0.09
37 32 0.23
38 76 0.55
39 6 0.04
40 10 0.07
ACGTcount: A:0.33, C:0.26, G:0.20, T:0.20
Consensus pattern (38 bp):
AACCCGGATATAATACCAGCACGAAGCCTGCGGGATTT
Found at i:14670048 original size:40 final size:39
Alignment explanation
Indices: 14670003--14670210 Score: 209
Period size: 40 Copynumber: 5.2 Consensus size: 39
14669993 CGGAATACAA
*
14670003 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
14670043 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
14670083 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* ** * * *
14670123 CCGGATTTAGTCACTAGCATAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
* * * * *
14670163 CCGGATTTAACTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
14670203 CCGGATAT
1 CCGGATAT
14670211 CATTTAATTG
Statistics
Matches: 142, Mismatches: 25, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
39 1 0.01
40 141 0.99
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.27
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:14670150 original size:80 final size:81
Alignment explanation
Indices: 14670003--14670208 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 81
14669993 CGGAATACAA
* * * *
14670003 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGA-TAGAACGACTTGCACAAAT
1 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
*
14670067 GCCTTCGGGTATTAGC
66 GCCTTCGGGTATTAAC
* * *
14670083 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTTAG-TC-ACTAGCATAAT
1 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGA-TTAGAACGACTAGCACAAA
*
14670146 TGCCTTCGGGTCTTAAC
65 TGCCTTCGGGTATTAAC
* * ** * *
14670163 CCGGATTTAACTACTAGCATAAATGTCTTCGGGACTTAGCCCGGAT
1 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT
14670209 ATCATTTAAT
Statistics
Matches: 109, Mismatches: 15, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
79 1 0.01
80 104 0.95
81 1 0.01
82 3 0.03
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.27
Consensus pattern (81 bp):
CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
GCCTTCGGGTATTAAC
Found at i:14676569 original size:40 final size:40
Alignment explanation
Indices: 14676461--14676630 Score: 225
Period size: 40 Copynumber: 4.2 Consensus size: 40
14676451 CGGGATTTAA
* * * * *
14676461 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
14676501 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
14676541 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
14676581 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
14676621 CCGGATATAT
1 CCGGATATAT
14676631 TTCCAATGTT
Statistics
Matches: 113, Mismatches: 15, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
39 1 0.01
40 112 0.99
ACGTcount: A:0.22, C:0.28, G:0.25, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:14680836 original size:21 final size:21
Alignment explanation
Indices: 14680811--14680853 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
14680801 GTGAGCCCAA
14680811 ACGGCATCACTAAGAACTCGT
1 ACGGCATCACTAAGAACTCGT
14680832 ACGGCATCACTAAGAACTCGT
1 ACGGCATCACTAAGAACTCGT
14680853 A
1 A
14680854 GTGACCATTC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.35, C:0.28, G:0.19, T:0.19
Consensus pattern (21 bp):
ACGGCATCACTAAGAACTCGT
Found at i:14684646 original size:40 final size:40
Alignment explanation
Indices: 14684538--14684707 Score: 225
Period size: 40 Copynumber: 4.2 Consensus size: 40
14684528 CGGGATTTAA
* * * * *
14684538 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
14684578 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
14684618 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
14684658 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
14684698 CCGGATATAT
1 CCGGATATAT
14684708 TTCCAATGTT
Statistics
Matches: 113, Mismatches: 15, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
39 1 0.01
40 112 0.99
ACGTcount: A:0.22, C:0.28, G:0.25, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:14692059 original size:42 final size:42
Alignment explanation
Indices: 14692007--14692087 Score: 101
Period size: 42 Copynumber: 1.9 Consensus size: 42
14691997 AGGCTGCATA
* * *
14692007 GAAGCACATAAGTGCTAAACGGAAA-CTCGTAAGGGTTAAACG
1 GAAGCACATAAGAGCTAAACGAAAACCT-ATAAGGGTTAAACG
* *
14692049 GAAGCTCATAAGAGCTTAACGAAAACCTATAAGGGTTAA
1 GAAGCACATAAGAGCTAAACGAAAACCTATAAGGGTTAA
14692088 TCTAAAGCTC
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
42 31 0.94
43 2 0.06
ACGTcount: A:0.42, C:0.16, G:0.23, T:0.19
Consensus pattern (42 bp):
GAAGCACATAAGAGCTAAACGAAAACCTATAAGGGTTAAACG
Found at i:14692069 original size:21 final size:20
Alignment explanation
Indices: 14692007--14692069 Score: 54
Period size: 21 Copynumber: 3.0 Consensus size: 20
14691997 AGGCTGCATA
* *
14692007 GAAGCACATAAGTGCTAAACG
1 GAAGCTCATAAG-GCTTAACG
* * *
14692028 GAAACTCGTAAGGGTTAAACG
1 GAAGCTCATAAGGCTT-AACG
14692049 GAAGCTCATAAGAGCTTAACG
1 GAAGCTCATAAG-GCTTAACG
14692070 AAAACCTATA
Statistics
Matches: 32, Mismatches: 8, Indels: 4
0.73 0.18 0.09
Matches are distributed among these distances:
20 2 0.06
21 27 0.84
22 3 0.09
ACGTcount: A:0.40, C:0.17, G:0.25, T:0.17
Consensus pattern (20 bp):
GAAGCTCATAAGGCTTAACG
Found at i:14692096 original size:42 final size:42
Alignment explanation
Indices: 14692036--14692130 Score: 102
Period size: 42 Copynumber: 2.3 Consensus size: 42
14692026 CGGAAACTCG
* * * * *
14692036 TAAGGGTTAAACGGAAGCTCATAAGAGCT-TAACGAAAACCTA
1 TAAGGGTTAAACGAAAGCTCAGAAAAGCTGAAACG-AAACCCA
* * *
14692078 TAAGGGTTAATCTAAAGCTCAGAAAAGCTGAAATGAAACCCA
1 TAAGGGTTAAACGAAAGCTCAGAAAAGCTGAAACGAAACCCA
14692120 TAAGGGTTAAA
1 TAAGGGTTAAA
14692131 TTGAAACTCA
Statistics
Matches: 43, Mismatches: 9, Indels: 2
0.80 0.17 0.04
Matches are distributed among these distances:
42 40 0.93
43 3 0.07
ACGTcount: A:0.44, C:0.15, G:0.21, T:0.20
Consensus pattern (42 bp):
TAAGGGTTAAACGAAAGCTCAGAAAAGCTGAAACGAAACCCA
Found at i:14692149 original size:21 final size:21
Alignment explanation
Indices: 14692111--14692150 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
14692101 AAAGCTGAAA
*
14692111 TGAAACCCATAAGGGTTAAAT
1 TGAAACCCATAAGAGTTAAAT
* *
14692132 TGAAACTCATATGAGTTAA
1 TGAAACCCATAAGAGTTAA
14692151 CTAAAGCTCA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.42, C:0.12, G:0.17, T:0.28
Consensus pattern (21 bp):
TGAAACCCATAAGAGTTAAAT
Found at i:14692564 original size:10 final size:10
Alignment explanation
Indices: 14692549--14692575 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
14692539 TGTTTTTGGT
14692549 TGAAGAATTG
1 TGAAGAATTG
14692559 TGAAGAATTG
1 TGAAGAATTG
14692569 TGAAGAA
1 TGAAGAA
14692576 ATGTCTAGAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.44, C:0.00, G:0.30, T:0.26
Consensus pattern (10 bp):
TGAAGAATTG
Found at i:14694032 original size:42 final size:42
Alignment explanation
Indices: 14693985--14694076 Score: 139
Period size: 42 Copynumber: 2.2 Consensus size: 42
14693975 TGGCCCTTAG
* * ** *
14693985 GCCCATTTCAATATCGCATGTAATGTCAATGGATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
14694027 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
14694069 GCCCATTT
1 GCCCATTT
14694077 GGGGAGAGTA
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.34, C:0.22, G:0.15, T:0.29
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
Found at i:14694265 original size:26 final size:26
Alignment explanation
Indices: 14694224--14694317 Score: 154
Period size: 26 Copynumber: 3.7 Consensus size: 26
14694214 TTTAATAACC
*
14694224 GGGGCA-AAGCCTTTTTCGGTAAACT
1 GGGGCATAAGCCCTTTTCGGTAAACT
**
14694249 GGGGCATAAGCCCTTTTCAATAAACT
1 GGGGCATAAGCCCTTTTCGGTAAACT
14694275 GGGGCATAAGCCCTTTTCGGTAAACT
1 GGGGCATAAGCCCTTTTCGGTAAACT
14694301 GGGGCATAAGCCCTTTT
1 GGGGCATAAGCCCTTTT
14694318 GCACTTCCTC
Statistics
Matches: 63, Mismatches: 5, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
25 6 0.10
26 57 0.90
ACGTcount: A:0.24, C:0.22, G:0.26, T:0.28
Consensus pattern (26 bp):
GGGGCATAAGCCCTTTTCGGTAAACT
Found at i:14695182 original size:27 final size:27
Alignment explanation
Indices: 14695120--14695197 Score: 88
Period size: 27 Copynumber: 2.9 Consensus size: 27
14695110 GGGCATATTC
14695120 GTCATTTTACCATACAGGGGTATTACG
1 GTCATTTTACCATACAGGGGTATTACG
* *
14695147 GTCACTTTACCCTACAGGGGCT-TTACG
1 GTCATTTTACCATACAGGGG-TATTACG
* *
14695174 GTCTTTTTACC-TAATAGGGGTATT
1 GTCATTTTACCAT-ACAGGGGTATT
14695198 TTAGTCATTT
Statistics
Matches: 43, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
26 2 0.05
27 40 0.93
28 1 0.02
ACGTcount: A:0.22, C:0.21, G:0.22, T:0.36
Consensus pattern (27 bp):
GTCATTTTACCATACAGGGGTATTACG
Found at i:14695268 original size:27 final size:27
Alignment explanation
Indices: 14695216--14695696 Score: 193
Period size: 27 Copynumber: 17.8 Consensus size: 27
14695206 TTCATCCTAT
* * * * *
14695216 AAGGGTGTTTTGGTAAATCTACAAACC
1 AAGGGTATTTTGGTAATTTTATAAATC
** *
14695243 AAGGGTATTTCAGTAATTTTGTAAA-C
1 AAGGGTATTTTGGTAATTTTATAAATC
* *** *
14695269 TAATGGTATTTCCATAATTTTTAAAAAGTC
1 -AAGGGTATTTTGGTAA-TTTTATAAA-TC
* * *
14695299 AAGGGTATTTCT-GTAACTTTGTAAATT
1 AAGGGTATTT-TGGTAATTTTATAAATC
* * *
14695326 AGGGGTATTTTGGTAATTTTACAAATT
1 AAGGGTATTTTGGTAATTTTATAAATC
* * * *
14695353 GAGGGTATTTCGGTAATTTCACAAA-C
1 AAGGGTATTTTGGTAATTTTATAAATC
* *
14695379 CAGTGGTATTTTGGTAATTTTACAAAAT-
1 AAG-GGTATTTTGGTAATTTTA-TAAATC
* * *
14695407 AGGGGTATTTTGGTAATTTTACAAATTG
1 AAGGGTATTTTGGTAATTTTATAAA-TC
* * *
14695435 AA-GGTATTTCGGTAATTTTACAAACC
1 AAGGGTATTTTGGTAATTTTATAAATC
** * * *
14695461 GGGGGTATTTTAGCAATTTTACAAA-C
1 AAGGGTATTTTGGTAATTTTATAAATC
* *
14695487 TAGGGTATTTTGGTAATTTTACT-GATC
1 AAGGGTATTTTGGTAATTTTA-TAAATC
* * *
14695514 GAGGGTATTTTGGTAATTTTGTAAACC
1 AAGGGTATTTTGGTAATTTTATAAATC
* * *
14695541 AATGGTATTTTAGTAATTTTGTAAATC
1 AAGGGTATTTTGGTAATTTTATAAATC
* ***** * *
14695568 GAGGGTAAAACAGTAATTCTGTAAATC
1 AAGGGTATTTTGGTAATTTTATAAATC
***** *
14695595 AAGGGTAAAACAGTAATTCTATAAATC
1 AAGGGTATTTTGGTAATTTTATAAATC
* **** *
14695622 GAGGGTAAAACGGTAATTCTATAAATC
1 AAGGGTATTTTGGTAATTTTATAAATC
* *** * *
14695649 GAGGGTAAAATGGTAATTCTATAAATT
1 AAGGGTATTTTGGTAATTTTATAAATC
* *
14695676 GAGGGTACTTTGGTAATTTTA
1 AAGGGTATTTTGGTAATTTTA
14695697 CAATTTGAGG
Statistics
Matches: 364, Mismatches: 75, Indels: 30
0.78 0.16 0.06
Matches are distributed among these distances:
26 27 0.07
27 306 0.84
28 18 0.05
29 12 0.03
30 1 0.00
ACGTcount: A:0.33, C:0.09, G:0.20, T:0.38
Consensus pattern (27 bp):
AAGGGTATTTTGGTAATTTTATAAATC
Found at i:14695387 original size:54 final size:54
Alignment explanation
Indices: 14695329--14695574 Score: 264
Period size: 54 Copynumber: 4.6 Consensus size: 54
14695319 GTAAATTAGG
* * *
14695329 GGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACCAGT
1 GGTATTTTGGTAATTTTACAAATCGAGGGTATTTTGGTAATTTTACAAACCAGT
* ** *
14695383 GGTATTTTGGTAATTTTACAAAATAG-GGGTATTTTGGTAATTTTACAAA-TTGAA
1 GGTATTTTGGTAATTTTAC-AAATCGAGGGTATTTTGGTAATTTTACAAACCAG-T
* * * * * *
14695437 GGTATTTCGGTAATTTTACAAACCGGGGGTATTTTAGCAATTTTACAAACTAG-
1 GGTATTTTGGTAATTTTACAAATCGAGGGTATTTTGGTAATTTTACAAACCAGT
** ** *
14695490 GGTATTTTGGTAATTTTACTGATCGAGGGTATTTTGGTAATTTTGTAAACCAAT
1 GGTATTTTGGTAATTTTACAAATCGAGGGTATTTTGGTAATTTTACAAACCAGT
* **
14695544 GGTATTTTAGTAATTTTGTAAATCGAGGGTA
1 GGTATTTTGGTAATTTTACAAATCGAGGGTA
14695575 AAACAGTAAT
Statistics
Matches: 159, Mismatches: 28, Indels: 10
0.81 0.14 0.05
Matches are distributed among these distances:
53 47 0.30
54 105 0.66
55 7 0.04
ACGTcount: A:0.30, C:0.08, G:0.22, T:0.41
Consensus pattern (54 bp):
GGTATTTTGGTAATTTTACAAATCGAGGGTATTTTGGTAATTTTACAAACCAGT
Found at i:14695420 original size:81 final size:81
Alignment explanation
Indices: 14695325--14695560 Score: 339
Period size: 81 Copynumber: 2.9 Consensus size: 81
14695315 CTTTGTAAAT
*
14695325 TAGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACCAGTGGTATTT
1 TAGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTTACAAACCAGTGGTATTT
*
14695390 TGGTAATTTTACAAAA
66 TAGTAATTTTACAAAA
* * *
14695406 TAGGGGTATTTTGGTAATTTTACAAATTGAAGGTATTTCGGTAATTTTACAAACCGGGGGTATTT
1 TAGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTTACAAACCAGTGGTATTT
* *
14695471 TAGCAATTTTACAAAC
66 TAGTAATTTTACAAAA
** * * ** *
14695487 TA-GGGTATTTTGGTAATTTTACTGATCGAGGGTATTTTGGTAATTTTGTAAACCAATGGTATTT
1 TAGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTTACAAACCAGTGGTATTT
14695551 TAGTAATTTT
66 TAGTAATTTT
14695561 GTAAATCGAG
Statistics
Matches: 137, Mismatches: 18, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
80 61 0.45
81 76 0.55
ACGTcount: A:0.29, C:0.08, G:0.21, T:0.42
Consensus pattern (81 bp):
TAGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTTACAAACCAGTGGTATTT
TAGTAATTTTACAAAA
Found at i:14695704 original size:27 final size:27
Alignment explanation
Indices: 14695659--14695721 Score: 72
Period size: 27 Copynumber: 2.3 Consensus size: 27
14695649 GAGGGTAAAA
* * *
14695659 TGGTAATTCTATAAATTGAGGGTACTT
1 TGGTAATTTTACAAATTGAGGGCACTT
* *
14695686 TGGTAATTTTACAATTTGAGGGCATTT
1 TGGTAATTTTACAAATTGAGGGCACTT
*
14695713 TAGTAATTT
1 TGGTAATTT
14695722 GGTAAACTAA
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.29, C:0.06, G:0.21, T:0.44
Consensus pattern (27 bp):
TGGTAATTTTACAAATTGAGGGCACTT
Found at i:14701495 original size:43 final size:42
Alignment explanation
Indices: 14701433--14701553 Score: 136
Period size: 43 Copynumber: 2.9 Consensus size: 42
14701423 TACCATACCA
* * * *
14701433 ATGCCATATCCCAGTTATGGTCTTACGTGTAATCTCGTATTG
1 ATGCCATATCCCAGATATGGTCTTACGCGTAATCTCATATCG
* * *
14701475 ATGCCAATAGCCCAGCTATGGTTTTACGCG-AAGTCTCATATCG
1 ATGCC-ATATCCCAGATATGGTCTTACGCGTAA-TCTCATATCG
* *
14701518 ATGCCATATCTCAGATATGGTCTTACACGTAATCTC
1 ATGCCATATCCCAGATATGGTCTTACGCGTAATCTC
14701554 TGTAACCCTA
Statistics
Matches: 65, Mismatches: 11, Indels: 6
0.79 0.13 0.07
Matches are distributed among these distances:
42 30 0.46
43 35 0.54
ACGTcount: A:0.25, C:0.24, G:0.18, T:0.33
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACGCGTAATCTCATATCG
Found at i:14706489 original size:27 final size:25
Alignment explanation
Indices: 14706454--14706563 Score: 105
Period size: 26 Copynumber: 4.2 Consensus size: 25
14706444 AGCATGGCTG
*
14706454 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTG-CAGAGCCA
* *
14706480 CCAGATACAGATAATCGTGCAAAACCA
1 CCAGA-ACAGATAAT-GTGCAGAGCCA
14706507 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGT-GCAGAGCCA
* *
14706534 CCA-ATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAA-TGT-GCAGAGCCA
14706560 CCAG
1 CCAG
14706564 GACTCTTCCT
Statistics
Matches: 71, Mismatches: 7, Indels: 11
0.80 0.08 0.12
Matches are distributed among these distances:
25 1 0.01
26 36 0.51
27 31 0.44
28 3 0.04
ACGTcount: A:0.39, C:0.24, G:0.21, T:0.16
Consensus pattern (25 bp):
CCAGAACAGATAATGTGCAGAGCCA
Found at i:14714268 original size:28 final size:27
Alignment explanation
Indices: 14714160--14714272 Score: 104
Period size: 27 Copynumber: 4.1 Consensus size: 27
14714150 AGCATGGCTG
* *
14714160 CCAGAACAGATA-ATGTGACAGAGTCA
1 CCAGAACAGATATATGTGGCAGAGCCA
* * *
14714186 CCAGATATAGATA-ATCGTGGTAGAACCA
1 CCAGA-ACAGATATAT-GTGGCAGAGCCA
*
14714214 CCAAAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATATATGTGGCAGAGCCA
* * *
14714241 CCAGATCAGATAATTTGTGGCATAGCCA
1 CCAGAACAGAT-ATATGTGGCAGAGCCA
14714269 CCAG
1 CCAG
14714273 GACTCTTCCT
Statistics
Matches: 70, Mismatches: 13, Indels: 6
0.79 0.15 0.07
Matches are distributed among these distances:
26 5 0.07
27 33 0.47
28 32 0.46
ACGTcount: A:0.38, C:0.21, G:0.22, T:0.19
Consensus pattern (27 bp):
CCAGAACAGATATATGTGGCAGAGCCA
Found at i:14714709 original size:16 final size:15
Alignment explanation
Indices: 14714688--14714717 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
14714678 AAAATACCAA
14714688 CTTTTCGGCATTTTGG
1 CTTTTCGGC-TTTTGG
14714704 CTTTTCGGCTTTTG
1 CTTTTCGGCTTTTG
14714718 CCGATCTAGT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.03, C:0.20, G:0.23, T:0.53
Consensus pattern (15 bp):
CTTTTCGGCTTTTGG
Found at i:14715716 original size:24 final size:24
Alignment explanation
Indices: 14715689--14715735 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
14715679 CTAGATTTCC
**
14715689 TCCCTTATCTGCTCCTAAATCCTA
1 TCCCTTATCAACTCCTAAATCCTA
14715713 TCCCTTATCAACTCCTAAATCCT
1 TCCCTTATCAACTCCTAAATCCT
14715736 CTCCTGACAG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.23, C:0.38, G:0.02, T:0.36
Consensus pattern (24 bp):
TCCCTTATCAACTCCTAAATCCTA
Found at i:14721993 original size:43 final size:42
Alignment explanation
Indices: 14721944--14722051 Score: 110
Period size: 42 Copynumber: 2.5 Consensus size: 42
14721934 CATATCCTAA
* *
14721944 ATATGGTCTTACATGTAATCTCGTATTGATGCCAATAGCCCAG
1 ATATGGTCTTACATGTAATCTCATATCGATG-CAATAGCCCAG
* * * * * *
14721987 TTATGGTCGTACACG-AAGTCTCATATCGATGCTATATCCTAG
1 ATATGGTCTTACATGTAA-TCTCATATCGATGCAATAGCCCAG
*
14722029 ATCTGGTCTTACATGTAATCTCA
1 ATATGGTCTTACATGTAATCTCA
14722052 GTAACACTAA
Statistics
Matches: 51, Mismatches: 12, Indels: 5
0.75 0.18 0.07
Matches are distributed among these distances:
42 26 0.51
43 25 0.49
ACGTcount: A:0.27, C:0.21, G:0.18, T:0.34
Consensus pattern (42 bp):
ATATGGTCTTACATGTAATCTCATATCGATGCAATAGCCCAG
Found at i:14722051 original size:42 final size:42
Alignment explanation
Indices: 14721930--14722051 Score: 120
Period size: 43 Copynumber: 2.9 Consensus size: 42
14721920 TACCGTACCA
* * * *
14721930 ATGCCATATCCTAAATATGGTCTTACATGTAATCTCGTATTG
1 ATGCAATATCCTAGATATGGTCTTACATGTAATCTCATATCG
* * * * *
14721972 ATGCCAATAGCCCAGTTATGGTCGTACACG-AAGTCTCATATCG
1 ATG-CAATATCCTAGATATGGTCTTACATGTAA-TCTCATATCG
* *
14722015 ATGCTATATCCTAGATCTGGTCTTACATGTAATCTCA
1 ATGCAATATCCTAGATATGGTCTTACATGTAATCTCA
14722052 GTAACACTAA
Statistics
Matches: 61, Mismatches: 16, Indels: 6
0.73 0.19 0.07
Matches are distributed among these distances:
42 29 0.48
43 32 0.52
ACGTcount: A:0.28, C:0.22, G:0.16, T:0.34
Consensus pattern (42 bp):
ATGCAATATCCTAGATATGGTCTTACATGTAATCTCATATCG
Found at i:14724313 original size:40 final size:40
Alignment explanation
Indices: 14724258--14724507 Score: 385
Period size: 40 Copynumber: 6.2 Consensus size: 40
14724248 AACATTGGAA
14724258 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
14724298 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
14724338 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
14724378 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
14724418 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
14724457 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
14724498 CTATATCCGG
1 ATATATCCGG
14724508 TTAAATCCCG
Statistics
Matches: 191, Mismatches: 17, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
39 2 0.01
40 189 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:14732482 original size:40 final size:40
Alignment explanation
Indices: 14732427--14732676 Score: 385
Period size: 40 Copynumber: 6.2 Consensus size: 40
14732417 GACATTGGAA
14732427 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
14732467 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
14732507 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
14732547 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
14732587 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
14732626 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
14732667 CTATATCCGG
1 ATATATCCGG
14732677 TTAAATCCCG
Statistics
Matches: 191, Mismatches: 17, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
39 2 0.01
40 189 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:14733502 original size:54 final size:54
Alignment explanation
Indices: 14733443--14733693 Score: 415
Period size: 52 Copynumber: 4.7 Consensus size: 54
14733433 TGACCGAGGC
*
14733443 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAAAGGC
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAAAGGT
*
14733497 TCAACTCACCTCTCGC-A-ATGAGTTGA-TTTTGAAAAAACAGGAATTAAAAGGT
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTG-AAAAACAGAAATTAAAAGGT
*
14733549 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATAGAAATTAAAAGGT
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAAAGGT
14733603 TCAAC-CACCTCTCGCAATATGAG-TGATTTTTGAAAAA-ATGAAATTAAAAGGT
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACA-GAAATTAAAAGGT
14733655 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAA
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAA
14733694 ATTTGAAATT
Statistics
Matches: 186, Mismatches: 4, Indels: 14
0.91 0.02 0.07
Matches are distributed among these distances:
51 6 0.03
52 75 0.40
53 38 0.20
54 62 0.33
55 5 0.03
ACGTcount: A:0.38, C:0.17, G:0.15, T:0.29
Consensus pattern (54 bp):
TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAAAGGT
Found at i:14733630 original size:106 final size:106
Alignment explanation
Indices: 14733443--14733693 Score: 418
Period size: 106 Copynumber: 2.4 Consensus size: 106
14733433 TGACCGAGGC
14733443 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAAAGGCTCAACTCACCT
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAAAGGCTCAACTCACCT
*
14733508 CTCGCAATGAGTTGA-TTTTGAAAAAACAGGAATTAAAAGGT
66 CTCGCAATGAGTTGATTTTTGAAAAAA-AGAAATTAAAAGGT
* *
14733549 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATAGAAATTAAAAGGTTCAAC-CACCT
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAAAGGCTCAACTCACCT
*
14733613 CTCGCAATATGAG-TGATTTTTGAAAAAATGAAATTAAAAGGT
66 CTCGC-A-ATGAGTTGATTTTTGAAAAAAAGAAATTAAAAGGT
14733655 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAA
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAA
14733694 ATTTGAAATT
Statistics
Matches: 138, Mismatches: 4, Indels: 6
0.93 0.03 0.04
Matches are distributed among these distances:
105 10 0.07
106 112 0.81
107 16 0.12
ACGTcount: A:0.38, C:0.17, G:0.15, T:0.29
Consensus pattern (106 bp):
TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAAAGGCTCAACTCACCT
CTCGCAATGAGTTGATTTTTGAAAAAAAGAAATTAAAAGGT
Found at i:14733864 original size:72 final size:72
Alignment explanation
Indices: 14733655--14733989 Score: 469
Period size: 72 Copynumber: 4.6 Consensus size: 72
14733645 ATTAAAAGGT
** * *
14733655 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAAATTTGAAATTGAAA-TACCTCAAC-T
1 TCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACA---GAAATTGAAATTACCTCAACGT
*
14733718 GTCTTGAGGC
63 ATCTTGAGGC
*
14733728 TCAACTCATTTCTCGCAATATGAGTTG-ATTTTGAAAACAGAAATTGAAAATACCTCAACGTATC
1 TCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACGTATC
14733792 TTGAGGC
66 TTGAGGC
14733799 TCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACGTATC
1 TCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACGTATC
14733864 TTGAGGC
66 TTGAGGC
** * *
14733871 TCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTAAATCAGCGTGTC
1 TCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACGTATC
*
14733936 CTGAGGC
66 TTGAGGC
** * * *
14733943 TCAACTCACCTCTCACAATATGAGTTGATTTTTGAAAAACAAAAATT
1 TCAACTCATTTCTCGCAATATGAGTTGAATTTTG-AAAACAGAAATT
14733990 AAAAGGCTTA
Statistics
Matches: 242, Mismatches: 16, Indels: 8
0.91 0.06 0.03
Matches are distributed among these distances:
69 10 0.04
70 9 0.04
71 37 0.15
72 150 0.62
73 36 0.15
ACGTcount: A:0.35, C:0.18, G:0.15, T:0.32
Consensus pattern (72 bp):
TCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACGTATC
TTGAGGC
Found at i:14734089 original size:123 final size:126
Alignment explanation
Indices: 14733867--14734098 Score: 317
Period size: 123 Copynumber: 1.9 Consensus size: 126
14733857 ACGTATCTTG
** * * * *
14733867 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTAAATCAGCG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTCAATTTTGAAAACAGAAACTAAAAATAAATCAGCG
* *
14733932 TGTCCTGAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTGAAAAACAAAAATTAAA
66 TGCCCCGAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTGAAAAACAAAAATTAAA
* * **
14733993 AGGCTTAACTCACCTCTCGCAATATGAG-TCAA-TTT-AAAACATAAACTAAAAATACCTCAGCG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTCAATTTTGAAAACAGAAACTAAAAATAAATCAGCG
* *
14734055 TGCCCCGAGGTTCAACTCACCTCTCGCAATATGAGTTGATTTTT
66 TGCCCCGAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTT
14734099 TTTGACAAAC
Statistics
Matches: 92, Mismatches: 14, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
123 61 0.66
124 3 0.03
125 3 0.03
126 25 0.27
ACGTcount: A:0.35, C:0.21, G:0.15, T:0.29
Consensus pattern (126 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTCAATTTTGAAAACAGAAACTAAAAATAAATCAGCG
TGCCCCGAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTGAAAAACAAAAATTAAA
Found at i:14734155 original size:76 final size:78
Alignment explanation
Indices: 14734029--14734253 Score: 319
Period size: 76 Copynumber: 2.9 Consensus size: 78
14734019 AGTCAATTTA
* * * *
14734029 AAACATAAACTAAAAATACCTCAGCGTGCCCCGAGGTTCAACTCACCTCTCGCAATATGAGTTGA
1 AAACATAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
***
14734094 TTTTTT-TTGA-C
66 TTTTTTGAAAAGC
* *
14734105 AAACATAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
1 AAACATAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
14734170 TTTTTTGAAAAGC
66 TTTTTTGAAAAGC
* *
14734183 AGAAGCAAAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGCT
1 A-AA-CATAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
14734248 GATTTT
64 GATTTT
14734254 CAAAAACATA
Statistics
Matches: 132, Mismatches: 13, Indels: 4
0.89 0.09 0.03
Matches are distributed among these distances:
76 65 0.49
77 1 0.01
78 2 0.02
79 2 0.02
80 62 0.47
ACGTcount: A:0.32, C:0.24, G:0.16, T:0.28
Consensus pattern (78 bp):
AAACATAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
TTTTTTGAAAAGC
Found at i:14734226 original size:80 final size:78
Alignment explanation
Indices: 14734041--14734253 Score: 313
Period size: 80 Copynumber: 2.7 Consensus size: 78
14734031 ACATAAACTA
* * ***
14734041 AAAATACCTCAGCGTGCCCCGAGGTTCAACTCACCTCTCGCAATATGAGTTGATTTTTT-TTGAC
1 AAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAC
*
14734105 AAA-CATAAATTG
66 AAAGCAAAAATTG
* *
14734117 AAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAG
1 AAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAA-
14734182 CAGAAGCAAAAATTG
65 CA-AAGCAAAAATTG
*
14734197 AAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTT
1 AAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
14734254 CAAAAACATA
Statistics
Matches: 122, Mismatches: 11, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
76 55 0.45
77 1 0.01
78 2 0.02
79 2 0.02
80 62 0.51
ACGTcount: A:0.30, C:0.24, G:0.17, T:0.28
Consensus pattern (78 bp):
AAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAC
AAAGCAAAAATTG
Found at i:14734277 original size:16 final size:16
Alignment explanation
Indices: 14734256--14734286 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
14734246 CTGATTTTCA
*
14734256 AAAACATAAATTGAAG
1 AAAACAGAAATTGAAG
14734272 AAAACAGAAATTGAA
1 AAAACAGAAATTGAA
14734287 ATTACCTCAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.65, C:0.06, G:0.13, T:0.16
Consensus pattern (16 bp):
AAAACAGAAATTGAAG
Found at i:14734427 original size:174 final size:167
Alignment explanation
Indices: 14734105--14734589 Score: 544
Period size: 168 Copynumber: 3.0 Consensus size: 167
14734095 TTTTTTTGAC
* *
14734105 AAACATAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
1 AAACAGAAATTGAAATTACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
* *
14734170 TTTTTTGAAAAGCAGAAGCAAAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCT
66 -TTTTTGAAAAGCAAAAGAAAAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCT
14734235 CGCAATATGAGCTGATTTTCAAAAACATAAATTGAAGA
130 CGCAATATGAGCTGATTTTCAAAAACATAAATTGAAGA
14734273 AAACAGAAATTGAAATTACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
1 AAACAGAAATTGAAATTACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
14734338 -TTTTGAAAAGCATAAATTGAAAAACGGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACT
66 TTTTTGAAAAGCA-AAA--G--AAA---AAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACT
*
14734402 CACCTCTCGCAATATGAGTTGATTTT--------T---TTG-A-A
123 CACCTCTCGCAATATGAGCTGATTTTCAAAAACATAAATTGAAGA
* * * * * * * **
14734434 AAGCATAAATTGAAAATACCTCAACGTGTCTTGAGGCTCGACTCATTTCTCGCAATATGAGTTGA
1 AAACAGAAATTGAAATTACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
* * *
14734499 GTTTTG---A-CAAACAG---AAATTGAAATTACCTCAGCATGCCCTGAGGCTCAACTCACCTCT
66 TTTTTGAAAAGCAAA-AGAAAAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCT
* * *
14734557 CGCAATATGAGTTGATTTTTGAAAAACAGAAAT
130 CGCAATATGAGCTGA-TTTTCAAAAACATAAAT
14734590 AAAACATCAA
Statistics
Matches: 278, Mismatches: 17, Indels: 52
0.80 0.05 0.15
Matches are distributed among these distances:
148 57 0.21
149 4 0.01
156 1 0.00
157 2 0.01
158 3 0.01
159 1 0.00
160 1 0.00
161 57 0.21
162 6 0.02
163 3 0.01
166 13 0.05
167 2 0.01
168 63 0.23
169 1 0.00
171 2 0.01
174 62 0.22
ACGTcount: A:0.35, C:0.21, G:0.17, T:0.27
Consensus pattern (167 bp):
AAACAGAAATTGAAATTACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
TTTTTGAAAAGCAAAAGAAAAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTC
GCAATATGAGCTGATTTTCAAAAACATAAATTGAAGA
Found at i:14734551 original size:73 final size:73
Alignment explanation
Indices: 14734354--14734589 Score: 337
Period size: 73 Copynumber: 3.2 Consensus size: 73
14734344 AAAGCATAAA
*
14734354 TTGAAAAACGGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGA
14734419 GTTGATTTTT
66 GTTGA--TTT
* * * * * * **
14734429 TTGAAAAGCATAAATTGAAAATACCTCAACGTGTCTTGAGGCTCGACTCATTTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGA
*
14734494 GTTGAGTT
66 GTTGATTT
* * *
14734502 TTGACAAACAGAAATTGAAATTACCTCAGCATGCCCTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGA
14734567 GTTGATTT
66 GTTGATTT
14734575 TTGAAAAACAGAAAT
1 TTGAAAAACAGAAAT
14734590 AAAACATCAA
Statistics
Matches: 138, Mismatches: 23, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
73 77 0.56
75 61 0.44
ACGTcount: A:0.33, C:0.21, G:0.18, T:0.28
Consensus pattern (73 bp):
TTGAAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGA
GTTGATTT
Found at i:14736681 original size:20 final size:19
Alignment explanation
Indices: 14736656--14736716 Score: 67
Period size: 18 Copynumber: 3.4 Consensus size: 19
14736646 GCATTTGATT
14736656 TCTTTTTTGTTTTTTTCTTG
1 TCTTTTTTGTTTTTTT-TTG
*
14736676 TC--TTTT-TTTCTTTTTG
1 TCTTTTTTGTTTTTTTTTG
*
14736692 TTTTTTTTGTTTTTTTTT-
1 TCTTTTTTGTTTTTTTTTG
14736710 TCTTTTT
1 TCTTTTT
14736717 CTTTTCATGA
Statistics
Matches: 34, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
16 4 0.12
17 6 0.18
18 14 0.41
19 8 0.24
20 2 0.06
ACGTcount: A:0.00, C:0.08, G:0.07, T:0.85
Consensus pattern (19 bp):
TCTTTTTTGTTTTTTTTTG
Found at i:14736683 original size:13 final size:12
Alignment explanation
Indices: 14736665--14736708 Score: 54
Period size: 12 Copynumber: 3.6 Consensus size: 12
14736655 TTCTTTTTTG
14736665 TTTTTTTCTTGT
1 TTTTTTTCTTGT
14736677 CTTTTTTTCTT-T
1 -TTTTTTTCTTGT
*
14736689 TTGTTTTTTTTGT
1 TT-TTTTTCTTGT
14736702 TTTTTTT
1 TTTTTTT
14736709 TTCTTTTTCT
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
11 2 0.07
12 13 0.46
13 13 0.46
ACGTcount: A:0.00, C:0.07, G:0.07, T:0.86
Consensus pattern (12 bp):
TTTTTTTCTTGT
Found at i:14736694 original size:27 final size:27
Alignment explanation
Indices: 14736654--14736721 Score: 86
Period size: 26 Copynumber: 2.5 Consensus size: 27
14736644 TGGCATTTGA
14736654 TTTCTTTTTTGTTTTTTTCTTG-TCTTTT
1 TTTC-TTTTTGTTTTTTT-TTGTTCTTTT
*
14736682 TTTCTTTTTG-TTTTTTTTGTTTTTTT
1 TTTCTTTTTGTTTTTTTTTGTTCTTTT
*
14736708 TTTCTTTTTCTTTT
1 TTTCTTTTTGTTTT
14736722 CATGACTGTC
Statistics
Matches: 36, Mismatches: 2, Indels: 5
0.84 0.05 0.12
Matches are distributed among these distances:
25 3 0.08
26 20 0.56
27 9 0.25
28 4 0.11
ACGTcount: A:0.00, C:0.09, G:0.06, T:0.85
Consensus pattern (27 bp):
TTTCTTTTTGTTTTTTTTTGTTCTTTT
Found at i:14740920 original size:29 final size:28
Alignment explanation
Indices: 14740878--14740959 Score: 96
Period size: 31 Copynumber: 2.8 Consensus size: 28
14740868 AAATGTATAT
14740878 AATATGTA-TAAGAATATATATATACAC
1 AATATGTATTAAGAATATATATATACAC
14740905 AATATGGTATTAAGAATATATATATATACAC
1 AATAT-GTATTAAG-A-ATATATATATACAC
*
14740936 AATATAGTATTTAA-AAAATATATA
1 AATAT-GTA-TTAAGAATATATATA
14740960 CATAGGATGG
Statistics
Matches: 48, Mismatches: 2, Indels: 8
0.83 0.03 0.14
Matches are distributed among these distances:
27 5 0.10
28 3 0.06
29 12 0.25
30 2 0.04
31 22 0.46
32 4 0.08
ACGTcount: A:0.52, C:0.05, G:0.07, T:0.35
Consensus pattern (28 bp):
AATATGTATTAAGAATATATATATACAC
Found at i:14740929 original size:31 final size:31
Alignment explanation
Indices: 14740890--14740959 Score: 106
Period size: 31 Copynumber: 2.3 Consensus size: 31
14740880 TATGTATAAG
*
14740890 AATATATATATACACAATATGGTA-TTAAGAA
1 AATATATATATACACAATATAGTATTTAA-AA
*
14740921 TATATATATATACACAATATAGTATTTAAAA
1 AATATATATATACACAATATAGTATTTAAAA
14740952 AATATATA
1 AATATATA
14740960 CATAGGATGG
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
31 31 0.89
32 4 0.11
ACGTcount: A:0.53, C:0.06, G:0.06, T:0.36
Consensus pattern (31 bp):
AATATATATATACACAATATAGTATTTAAAA
Found at i:14741147 original size:3 final size:3
Alignment explanation
Indices: 14741139--14741210 Score: 144
Period size: 3 Copynumber: 24.0 Consensus size: 3
14741129 ATATATGCAT
14741139 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
14741187 ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA
14741211 TCTACAATAA
Statistics
Matches: 69, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 69 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:14741327 original size:37 final size:37
Alignment explanation
Indices: 14741256--14741327 Score: 94
Period size: 37 Copynumber: 1.9 Consensus size: 37
14741246 AAATATATAC
* *
14741256 ATATAAAATATTTACAATAATGATGTAAATAAACAAT
1 ATATAAAATATTTACAATAATCATATAAATAAACAAT
14741293 ATATAAAATATTTGA-AATAA-CATATAAATGAAACA
1 ATATAAAATATTT-ACAATAATCATATAAAT-AAACA
14741328 TTTAAATAAG
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
36 7 0.23
37 23 0.74
38 1 0.03
ACGTcount: A:0.58, C:0.06, G:0.06, T:0.31
Consensus pattern (37 bp):
ATATAAAATATTTACAATAATCATATAAATAAACAAT
Found at i:14743836 original size:2 final size:2
Alignment explanation
Indices: 14743824--14743860 Score: 65
Period size: 2 Copynumber: 18.5 Consensus size: 2
14743814 AGCATCACTT
*
14743824 TA TA AA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
14743861 TCGACTTTCA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:14747660 original size:61 final size:61
Alignment explanation
Indices: 14747590--14747711 Score: 244
Period size: 61 Copynumber: 2.0 Consensus size: 61
14747580 GTACTTAAGA
14747590 TAGTCATCTCACCAATAAATCACATTTCCAAACATTTCACACTCATGCTATGAATCACATT
1 TAGTCATCTCACCAATAAATCACATTTCCAAACATTTCACACTCATGCTATGAATCACATT
14747651 TAGTCATCTCACCAATAAATCACATTTCCAAACATTTCACACTCATGCTATGAATCACATT
1 TAGTCATCTCACCAATAAATCACATTTCCAAACATTTCACACTCATGCTATGAATCACATT
14747712 CCATCATACA
Statistics
Matches: 61, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
61 61 1.00
ACGTcount: A:0.36, C:0.28, G:0.05, T:0.31
Consensus pattern (61 bp):
TAGTCATCTCACCAATAAATCACATTTCCAAACATTTCACACTCATGCTATGAATCACATT
Found at i:14752426 original size:138 final size:138
Alignment explanation
Indices: 14752178--14752455 Score: 484
Period size: 138 Copynumber: 2.0 Consensus size: 138
14752168 TATTACGTCG
*
14752178 CTTATAGGATGATTTCTCTATTAACAGAAGCTTGATTTTATTGTTTACTGTCAAAAAGCTTGTAA
1 CTTATAGAATGATTTCTCTATTAACAGAAGCTTGATTTTATTGTTTACTGTCAAAAAGCTTGTAA
*
14752243 ACGGATGCTGATCTTTAAGTATGTTTAGACGTACTTCAAGTAGGATTTTTCCAATTGCTTTTGTT
66 ACGGATGCTGATCTTTAAGTATGTTTAGACGTACTTCAAGTAGGATTTTTCCAATTGCTTATGTT
14752308 GATTTTGT
131 GATTTTGT
* * *
14752316 CTTATAGAATGTTTTCTCTATTAGCAGAAGCTTGATTTTATTGTTTACTGTTAAAAAGCTTGTAA
1 CTTATAGAATGATTTCTCTATTAACAGAAGCTTGATTTTATTGTTTACTGTCAAAAAGCTTGTAA
* * *
14752381 ATGGATGCTGATCTTTATGTATGTTTAGACTTACTTCAAGTAGGATTTTTCCAATTGCTTATGTT
66 ACGGATGCTGATCTTTAAGTATGTTTAGACGTACTTCAAGTAGGATTTTTCCAATTGCTTATGTT
14752446 GATTTTGT
131 GATTTTGT
14752454 CT
1 CT
14752456 CAAAAAACAG
Statistics
Matches: 132, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
138 132 1.00
ACGTcount: A:0.26, C:0.12, G:0.18, T:0.45
Consensus pattern (138 bp):
CTTATAGAATGATTTCTCTATTAACAGAAGCTTGATTTTATTGTTTACTGTCAAAAAGCTTGTAA
ACGGATGCTGATCTTTAAGTATGTTTAGACGTACTTCAAGTAGGATTTTTCCAATTGCTTATGTT
GATTTTGT
Found at i:14757355 original size:15 final size:15
Alignment explanation
Indices: 14757335--14757395 Score: 51
Period size: 15 Copynumber: 4.3 Consensus size: 15
14757325 ATCATATCTC
14757335 ATATTTTCCATTTCA
1 ATATTTTCCATTTCA
*
14757350 ATATTTTCTCATCTC-
1 ATATTTTC-CATTTCA
*
14757365 ATA--TT-CATTTCTC
1 ATATTTTCCATTTC-A
14757378 AT-TTTTCCATTTCA
1 ATATTTTCCATTTCA
14757392 ATAT
1 ATAT
14757396 CAATCGCATA
Statistics
Matches: 36, Mismatches: 3, Indels: 14
0.68 0.06 0.26
Matches are distributed among these distances:
11 5 0.14
13 4 0.11
14 4 0.11
15 18 0.50
16 5 0.14
ACGTcount: A:0.25, C:0.21, G:0.00, T:0.54
Consensus pattern (15 bp):
ATATTTTCCATTTCA
Found at i:14757360 original size:43 final size:42
Alignment explanation
Indices: 14757311--14757395 Score: 143
Period size: 43 Copynumber: 2.0 Consensus size: 42
14757301 TCATATTTCA
14757311 TTTCTCATCTCATAATCATATCTCATATTTTCCATTTCAATAT
1 TTTCTCATCTCATAATCATATCTCAT-TTTTCCATTTCAATAT
* *
14757354 TTTCTCATCTCATATTCATTTCTCATTTTTCCATTTCAATAT
1 TTTCTCATCTCATAATCATATCTCATTTTTCCATTTCAATAT
14757396 CAATCGCATA
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
42 16 0.40
43 24 0.60
ACGTcount: A:0.25, C:0.24, G:0.00, T:0.52
Consensus pattern (42 bp):
TTTCTCATCTCATAATCATATCTCATTTTTCCATTTCAATAT
Found at i:14764230 original size:40 final size:40
Alignment explanation
Indices: 14764136--14764262 Score: 141
Period size: 41 Copynumber: 3.1 Consensus size: 40
14764126 ATTATATGAC
* *
14764136 TTTTAACGGCGTTTTA-CTGAAAGCGCCGCTAATGCTCTGGT
1 TTTTAGCGGCGTTTTATC-GAAAGCGCCGCTATTGCTCT-GT
14764177 TTTTAGCGGCGTTTTATCGAAAGCGCCGCTATTGCTCTGT
1 TTTTAGCGGCGTTTTATCGAAAGCGCCGCTATTGCTCTGT
* * * * *
14764217 TTTTAGCGACGTTTT-TGGTAAAACGCAGTTATTGCTCTGT
1 TTTTAGCGGCGTTTTATCG-AAAGCGCCGCTATTGCTCTGT
14764257 GTTTTA
1 -TTTTA
14764263 TAATTTTTGC
Statistics
Matches: 76, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
39 2 0.03
40 34 0.45
41 39 0.51
42 1 0.01
ACGTcount: A:0.18, C:0.19, G:0.24, T:0.39
Consensus pattern (40 bp):
TTTTAGCGGCGTTTTATCGAAAGCGCCGCTATTGCTCTGT
Found at i:14765862 original size:71 final size:71
Alignment explanation
Indices: 14765774--14765937 Score: 319
Period size: 71 Copynumber: 2.3 Consensus size: 71
14765764 GAGATGTATC
14765774 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
*
14765839 AGGACA
66 AGGAAA
14765845 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
14765910 AGGAAA
66 AGGAAA
14765916 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
14765938 AGACAAATCG
Statistics
Matches: 92, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
71 92 1.00
ACGTcount: A:0.36, C:0.17, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGAAA
Found at i:14767316 original size:19 final size:19
Alignment explanation
Indices: 14767284--14767330 Score: 62
Period size: 19 Copynumber: 2.6 Consensus size: 19
14767274 GACTATCTTC
*
14767284 TTCTTTTC--TTCTTTCGT
1 TTCTTTTCTTTTCTTTCCT
14767301 TTCTTTTCTTTTCTTTCCT
1 TTCTTTTCTTTTCTTTCCT
*
14767320 TTCCTTTCTTT
1 TTCTTTTCTTT
14767331 GTTAAATTTG
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
17 8 0.31
19 18 0.69
ACGTcount: A:0.00, C:0.26, G:0.02, T:0.72
Consensus pattern (19 bp):
TTCTTTTCTTTTCTTTCCT
Found at i:14769505 original size:24 final size:24
Alignment explanation
Indices: 14769457--14769513 Score: 69
Period size: 24 Copynumber: 2.4 Consensus size: 24
14769447 TGCCAAGGAG
* *
14769457 CCCACTCAAGCTACTACTAAAGCA
1 CCCACTCAACCTACTACCAAAGCA
* *
14769481 CCCACTCAACCTACTACCGAGGCA
1 CCCACTCAACCTACTACCAAAGCA
*
14769505 CCTACTCAA
1 CCCACTCAA
14769514 ACATTAGTTG
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.33, C:0.42, G:0.09, T:0.16
Consensus pattern (24 bp):
CCCACTCAACCTACTACCAAAGCA
Found at i:14769851 original size:20 final size:20
Alignment explanation
Indices: 14769826--14769866 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
14769816 TTACATATCA
14769826 TTTTCTTGTGCCATGGCATT
1 TTTTCTTGTGCCATGGCATT
* *
14769846 TTTTCTTTTGCCATGTCATT
1 TTTTCTTGTGCCATGGCATT
14769866 T
1 T
14769867 GTTGTAAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.10, C:0.20, G:0.15, T:0.56
Consensus pattern (20 bp):
TTTTCTTGTGCCATGGCATT
Found at i:14770900 original size:153 final size:154
Alignment explanation
Indices: 14770610--14770914 Score: 531
Period size: 153 Copynumber: 2.0 Consensus size: 154
14770600 ACATGTTTAA
* *
14770610 TCCCTTAATATACATATAATTTATTTAAAAAAATAGTAAGCTTGTACATGTATGCTTAAAGTAGG
1 TCCCTTAATATACATATAATTTATCTAAAAAAATAGTAAGCTTGTACATGTATGCTTAAAGCAGG
* *
14770675 AGTGACCTGAGTTTGGGTAATAAATGAACTGAGTAAGCTAGGAGATATGTGCAATGGCCAGGACG
66 AGTGACCTGAGTTTGGGTAATAAATGAACTGAGTAAGCTAGGAGATATGTGCAATGGCCAGAACA
14770740 TAAATGAACCTTAGAAAATCTTGT
131 TAAATGAACCTTAGAAAATCTTGT
* *
14770764 TCCC-TAATATACATATATTTTATCTAAAAAAATATTAAGCTTGTACATGTATGCTTAAAGCAGG
1 TCCCTTAATATACATATAATTTATCTAAAAAAATAGTAAGCTTGTACATGTATGCTTAAAGCAGG
*
14770828 AGTGACCTGAGTTTGGGTAATAAATGAACTGAGTAAGCTAGGAGATATTTGCAATGGCCAGAACA
66 AGTGACCTGAGTTTGGGTAATAAATGAACTGAGTAAGCTAGGAGATATGTGCAATGGCCAGAACA
*
14770893 TATATGAACCTTAGAAAATCTT
131 TAAATGAACCTTAGAAAATCTT
14770915 ATTTTTAAAA
Statistics
Matches: 143, Mismatches: 8, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
153 139 0.97
154 4 0.03
ACGTcount: A:0.37, C:0.12, G:0.19, T:0.31
Consensus pattern (154 bp):
TCCCTTAATATACATATAATTTATCTAAAAAAATAGTAAGCTTGTACATGTATGCTTAAAGCAGG
AGTGACCTGAGTTTGGGTAATAAATGAACTGAGTAAGCTAGGAGATATGTGCAATGGCCAGAACA
TAAATGAACCTTAGAAAATCTTGT
Found at i:14776103 original size:30 final size:29
Alignment explanation
Indices: 14776059--14776122 Score: 110
Period size: 30 Copynumber: 2.2 Consensus size: 29
14776049 CAAGTAGCCG
14776059 AAGCTAGATAAATCGCACACTTAGTGCCA
1 AAGCTAGATAAATCGCACACTTAGTGCCA
*
14776088 AAGCTAGTTTAAATCGCACACTTAGTGCCA
1 AAGCTAG-ATAAATCGCACACTTAGTGCCA
14776118 AAGCT
1 AAGCT
14776123 TCCAATTCAT
Statistics
Matches: 33, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
29 7 0.21
30 26 0.79
ACGTcount: A:0.36, C:0.23, G:0.17, T:0.23
Consensus pattern (29 bp):
AAGCTAGATAAATCGCACACTTAGTGCCA
Found at i:14780299 original size:40 final size:40
Alignment explanation
Indices: 14780115--14780299 Score: 232
Period size: 40 Copynumber: 4.7 Consensus size: 40
14780105 GCTACTCATT
* *
14780115 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
14780155 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* ** *
14780195 CCAATGCCTTTAGG-CGTAGCCCGGA-ATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * *
14780234 CAAATGCCTTCGGGACTTAACCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAAC-TCGCA
14780275 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
14780300 CATCATTCGA
Statistics
Matches: 123, Mismatches: 18, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
39 32 0.26
40 82 0.67
41 9 0.07
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:14788279 original size:40 final size:40
Alignment explanation
Indices: 14788242--14788423 Score: 210
Period size: 40 Copynumber: 4.6 Consensus size: 40
14788232 GCTACTCGTT
* *
14788242 CAAATGCCTTCGGGACATAGCCTGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
14788282 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAACTCGCA
* * * *
14788322 CCAATGCCTTCAGG-CTTAGCCCAG-AATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
* * * *
14788361 CAAATGCCTTCGGGACTTAACCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAAC-TCGCA
14788402 CAAA-GCCTTCGGGACTTAGCCC
1 CAAATGCCTTCGGGACTTAGCCC
14788424 AGACATCATT
Statistics
Matches: 120, Mismatches: 16, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
39 32 0.27
40 77 0.64
41 11 0.09
ACGTcount: A:0.27, C:0.29, G:0.20, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:14788355 original size:79 final size:80
Alignment explanation
Indices: 14788270--14788426 Score: 246
Period size: 79 Copynumber: 2.0 Consensus size: 80
14788260 AGCCTGGTTA
* * *
14788270 TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAAC-TCGCACCAATGCCTTCA
1 TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAGTAACTTAGCA-CAAAGCCTTCA
14788334 GG-CTTAGCCCAGAAT
65 GGACTTAGCCCAGAAT
* *
14788349 TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAGTCACTTAGCACAAAGCCTTCGG
1 TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAGTAACTTAGCACAAAGCCTTCAG
14788414 GACTTAGCCCAGA
66 GACTTAGCCCAGA
14788427 CATCATTCGA
Statistics
Matches: 71, Mismatches: 5, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
79 56 0.79
80 15 0.21
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.23
Consensus pattern (80 bp):
TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAGTAACTTAGCACAAAGCCTTCAG
GACTTAGCCCAGAAT
Found at i:14790576 original size:21 final size:21
Alignment explanation
Indices: 14790550--14790629 Score: 88
Period size: 21 Copynumber: 3.8 Consensus size: 21
14790540 AATGAGGAGG
* * *
14790550 GGCACACGCCCGTGTGATTGA
1 GGCACACGCCCATGTGACTAA
*
14790571 GGCACACGCCCATGTGAAGTAA
1 GGCACACGCCCATGTG-ACTAA
* * *
14790593 GGCACATGGCCGTGTGACTAA
1 GGCACACGCCCATGTGACTAA
14790614 GGCACACGCCCATGTG
1 GGCACACGCCCATGTG
14790630 GACCAGGGAC
Statistics
Matches: 48, Mismatches: 10, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
21 32 0.67
22 16 0.33
ACGTcount: A:0.24, C:0.29, G:0.31, T:0.16
Consensus pattern (21 bp):
GGCACACGCCCATGTGACTAA
Found at i:14794317 original size:40 final size:40
Alignment explanation
Indices: 14794251--14794417 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
14794241 AAATTGAATG
* * *
14794251 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
14794290 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
14794330 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
14794370 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
14794410 ATATCCGG
1 ATATCCGG
14794418 TTATATTCCG
Statistics
Matches: 103, Mismatches: 20, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
39 16 0.16
40 85 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:14801055 original size:55 final size:53
Alignment explanation
Indices: 14800959--14801066 Score: 130
Period size: 55 Copynumber: 2.0 Consensus size: 53
14800949 TGAAAAAAAA
14800959 AAAGAAAAAAAAAATGTTCATCTTCTCCATAGGCTTGGCCG-AATGTACTAAGG
1 AAAGAAAAAAAAAATGTTCATCTTCTCCATAGGCTTGGCCGAAAT-TACTAAGG
* ***
14801012 AAAGAAAAAAAAATTTGTTCATCCTT-TCTCATCTTCTTGGCCGAAATTACTAAGG
1 AAAGAAAAAAAAA-ATGTTCAT-CTTCTC-CATAGGCTTGGCCGAAATTACTAAGG
14801067 GAAAAGGGGG
Statistics
Matches: 47, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
53 13 0.28
54 9 0.19
55 22 0.47
56 3 0.06
ACGTcount: A:0.38, C:0.18, G:0.16, T:0.29
Consensus pattern (53 bp):
AAAGAAAAAAAAAATGTTCATCTTCTCCATAGGCTTGGCCGAAATTACTAAGG
Found at i:14802328 original size:40 final size:40
Alignment explanation
Indices: 14802262--14802428 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
14802252 AAATTGAATG
* * *
14802262 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
14802301 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
14802341 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
14802381 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
14802421 ATATCCGG
1 ATATCCGG
14802429 TTATATTCCG
Statistics
Matches: 103, Mismatches: 20, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
39 16 0.16
40 85 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:14805407 original size:40 final size:40
Alignment explanation
Indices: 14805341--14805507 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
14805331 AAATTGAATG
* * *
14805341 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
14805380 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
14805420 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
14805460 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
14805500 ATATCCGG
1 ATATCCGG
14805508 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:14813412 original size:40 final size:40
Alignment explanation
Indices: 14813346--14813512 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
14813336 AAATTGAATG
* * *
14813346 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
14813385 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
14813425 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
14813465 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
14813505 ATATCCGG
1 ATATCCGG
14813513 TTATATTCCG
Statistics
Matches: 103, Mismatches: 20, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
39 16 0.16
40 85 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:14822426 original size:20 final size:20
Alignment explanation
Indices: 14822397--14822440 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 20
14822387 GCCTAGACCG
14822397 TGTGGAGGTCAACACGCCCA
1 TGTGGAGGTCAACACGCCCA
* * * *
14822417 TGTGGTGGTCCATACGCTCA
1 TGTGGAGGTCAACACGCCCA
14822437 TGTG
1 TGTG
14822441 CATGCTACAC
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.18, C:0.25, G:0.32, T:0.25
Consensus pattern (20 bp):
TGTGGAGGTCAACACGCCCA
Found at i:14829836 original size:4 final size:4
Alignment explanation
Indices: 14829822--14829851 Score: 53
Period size: 4 Copynumber: 7.8 Consensus size: 4
14829812 TCACAAAAAA
14829822 TAAT T-AT TAAT TAAT TAAT TAAT TAAT TAA
1 TAAT TAAT TAAT TAAT TAAT TAAT TAAT TAA
14829852 AAATGAATAA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
3 3 0.12
4 22 0.88
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (4 bp):
TAAT
Found at i:14835179 original size:40 final size:39
Alignment explanation
Indices: 14835120--14835302 Score: 233
Period size: 39 Copynumber: 4.6 Consensus size: 39
14835110 TCGTTCAAAC
* * ** *
14835120 GCCTTCGGGACATAGCCCGGTTATGGTAACCCGCACGAA-T
1 GCCTTCGGG-CTTAGCCCGGATATCATAACTCGCAC-AATT
* *
14835160 GCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATT
1 GCCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATT
14835200 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
* * * *
14835239 GCCTTCGGGCTTAGCCCGGATGTCACAATTTGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
14835278 GCCTTCGGGCTTAGCCCGGATATCA
1 GCCTTCGGGCTTAGCCCGGATATCA
14835303 CTCGAACATT
Statistics
Matches: 128, Mismatches: 14, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
39 89 0.70
40 39 0.30
ACGTcount: A:0.22, C:0.31, G:0.23, T:0.24
Consensus pattern (39 bp):
GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
Found at i:14835230 original size:39 final size:39
Alignment explanation
Indices: 14835151--14835303 Score: 236
Period size: 39 Copynumber: 3.9 Consensus size: 39
14835141 TATGGTAACC
*
14835151 CGCACGAA-TGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCAC-AATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
*
14835191 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
* *
14835230 CGCACAATTGCCTTCGGGCTTAGCCCGGATGTCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
14835269 TGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
14835304 TCGAACATTT
Statistics
Matches: 105, Mismatches: 7, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
39 90 0.86
40 15 0.14
ACGTcount: A:0.23, C:0.31, G:0.22, T:0.24
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:14841666 original size:46 final size:50
Alignment explanation
Indices: 14841560--14841669 Score: 129
Period size: 53 Copynumber: 2.2 Consensus size: 50
14841550 TGTACTTTCG
* * *
14841560 TATAAGACCATAGCTGGGCTATGGCATCGGTACAATGTGATAATGTGATTCCG
1 TATAAGACCATAGCTGGGATATGGCATCAGT--AA-GTGATAATGTGATTCCA
*
14841613 TATAAGACCATATCTGGGATATGGCATCAGT-A-TGAT-ATGTGA-TCCA
1 TATAAGACCATAGCTGGGATATGGCATCAGTAAGTGATAATGTGATTCCA
14841659 TATAAGACCAT
1 TATAAGACCAT
14841670 GACAGGGCTA
Statistics
Matches: 53, Mismatches: 4, Indels: 7
0.83 0.06 0.11
Matches are distributed among these distances:
46 14 0.26
47 6 0.11
48 4 0.08
50 1 0.02
53 28 0.53
ACGTcount: A:0.32, C:0.16, G:0.23, T:0.29
Consensus pattern (50 bp):
TATAAGACCATAGCTGGGATATGGCATCAGTAAGTGATAATGTGATTCCA
Found at i:14845009 original size:40 final size:43
Alignment explanation
Indices: 14844927--14845010 Score: 111
Period size: 40 Copynumber: 2.0 Consensus size: 43
14844917 GTTTATCCTA
* * *
14844927 GAAAAATGAATTTAAAAAGAGGAGAAGATAATCTTGGGTTGTT
1 GAAAAAAGAATTTAAAAAGAGGAGAAGATAAACATGGGTTGTT
*
14844970 GAAAAAAGAATTT-AAAA-A-GAGAAGATAAACATGGTTTGTT
1 GAAAAAAGAATTTAAAAAGAGGAGAAGATAAACATGGGTTGTT
14845010 G
1 G
14845011 GATTTACCCT
Statistics
Matches: 37, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
40 20 0.54
41 1 0.03
42 4 0.11
43 12 0.32
ACGTcount: A:0.48, C:0.02, G:0.24, T:0.26
Consensus pattern (43 bp):
GAAAAAAGAATTTAAAAAGAGGAGAAGATAAACATGGGTTGTT
Found at i:14845771 original size:59 final size:59
Alignment explanation
Indices: 14845699--14845818 Score: 204
Period size: 59 Copynumber: 2.0 Consensus size: 59
14845689 TTCCAAATCA
* * *
14845699 ACATCATATATCCTTTATTCTTTGTCGTTGTATCTTTACCATATCATTCTTAGTTATTT
1 ACATCATATATCCTTTATTCTTTGTCATTGCATCTTTACCATATCATTATTAGTTATTT
*
14845758 ACATCATATATCCTTTATTTTTTGTCATTGCATCTTTACCATATCATTATTAGTTATTT
1 ACATCATATATCCTTTATTCTTTGTCATTGCATCTTTACCATATCATTATTAGTTATTT
14845817 AC
1 AC
14845819 TTGATCAATT
Statistics
Matches: 57, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
59 57 1.00
ACGTcount: A:0.24, C:0.18, G:0.06, T:0.52
Consensus pattern (59 bp):
ACATCATATATCCTTTATTCTTTGTCATTGCATCTTTACCATATCATTATTAGTTATTT
Found at i:14847561 original size:21 final size:20
Alignment explanation
Indices: 14847524--14847563 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
14847514 TATGTATGAT
14847524 TTTTGATGATTGATGATAGA
1 TTTTGATGATTGATGATAGA
* *
14847544 TTTTGAATGTTTGTTGATAG
1 TTTTG-ATGATTGATGATAG
14847564 TTAAACAAGT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.25, C:0.00, G:0.25, T:0.50
Consensus pattern (20 bp):
TTTTGATGATTGATGATAGA
Found at i:14848114 original size:40 final size:40
Alignment explanation
Indices: 14848049--14848235 Score: 275
Period size: 40 Copynumber: 4.6 Consensus size: 40
14848039 TTGACAATGG
* *
14848049 TTCGGCTATATATGGCACTTAGTGTGCGATTCGAGATAGC
1 TTCGGCTATGTATGGCACTTAGTGTGCGATTTGAGATAGC
* *
14848089 TTTGGTTATGTATGGCACTTAGTGTGCGATTTGAGATAGC
1 TTCGGCTATGTATGGCACTTAGTGTGCGATTTGAGATAGC
14848129 TTCGGCTATGTATGGCACTTAGTGTGCGATTTGAGATAGC
1 TTCGGCTATGTATGGCACTTAGTGTGCGATTTGAGATAGC
* * * * *
14848169 TTCGGCTATGTATGGCACTTAGCGTGCGAGATTAAAATAGA
1 TTCGGCTATGTATGGCACTTAGTGTGCGA-TTTGAGATAGC
14848210 TTCGGCTATGTAATGGCACTTAGTGT
1 TTCGGCTATGT-ATGGCACTTAGTGT
14848236 ACGAGATATT
Statistics
Matches: 133, Mismatches: 12, Indels: 2
0.90 0.08 0.01
Matches are distributed among these distances:
40 102 0.77
41 18 0.14
42 13 0.10
ACGTcount: A:0.22, C:0.14, G:0.28, T:0.35
Consensus pattern (40 bp):
TTCGGCTATGTATGGCACTTAGTGTGCGATTTGAGATAGC
Found at i:14853576 original size:55 final size:54
Alignment explanation
Indices: 14853452--14853659 Score: 219
Period size: 55 Copynumber: 3.8 Consensus size: 54
14853442 ATCCTTTTGA
* * * * *
14853452 AACTTACCATTGCCATGTCTCGACATGGTCTTATATGGTATCCTTGCTTTAT-G
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
* * *
14853505 AACTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATAG
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCC-TTGCCTTATAG
* *
14853559 TAACTTATCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCC-T-TAG
1 -AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
**
14853612 AAGCCTTACCAATTTTCATGCCTTTG-CATGGTCTTACATGGTATCCTT
1 AA--CTTACCAA-TGCCATGCC-TTGACATGGTCTTACATGGTATCCTT
14853660 AAACCTTAAT
Statistics
Matches: 130, Mismatches: 17, Indels: 14
0.81 0.11 0.09
Matches are distributed among these distances:
52 4 0.03
53 44 0.34
54 9 0.07
55 68 0.52
56 5 0.04
ACGTcount: A:0.22, C:0.25, G:0.17, T:0.37
Consensus pattern (54 bp):
AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
Found at i:14853598 original size:108 final size:109
Alignment explanation
Indices: 14853452--14853652 Score: 289
Period size: 108 Copynumber: 1.8 Consensus size: 109
14853442 ATCCTTTTGA
* * *
14853452 AACTTACCATTGCCATGTCTCGACATGGTCTTATATGGTATCCTTGCTTTATGAA-CTCACCAA-
1 AACTTACCAATGCCATGTCTCGACATGGTCTTACATGGTATCCTTGCCTTA-GAACCTCACCAAT
14853515 TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
65 TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
* * *
14853560 AACTTATCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTAGAAGCCTTACCAAT
1 AACTTACCAATGCCATGTCTCGACATGGTCTTACATGGTATCCTTGCCTTAGAA-CCTCACCAAT
** *
14853625 TTTCATGCCTTTGCATGGTCTTACATGG
65 TGCCATGCCTTGGCATGGTCTTACATGG
14853653 TATCCTTAAA
Statistics
Matches: 81, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
107 3 0.04
108 46 0.57
109 7 0.09
110 25 0.31
ACGTcount: A:0.22, C:0.24, G:0.18, T:0.36
Consensus pattern (109 bp):
AACTTACCAATGCCATGTCTCGACATGGTCTTACATGGTATCCTTGCCTTAGAACCTCACCAATT
GCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
Found at i:14860776 original size:16 final size:16
Alignment explanation
Indices: 14860757--14860787 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
14860747 CTTCTTCACT
14860757 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
14860773 TACTTACTTACTTAA
1 TACTCACTTACTTAA
14860788 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:14860793 original size:20 final size:20
Alignment explanation
Indices: 14860754--14860793 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
14860744 AAACTTCTTC
* *
14860754 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
14860774 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
14860794 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:14861167 original size:108 final size:109
Alignment explanation
Indices: 14861023--14861222 Score: 316
Period size: 108 Copynumber: 1.8 Consensus size: 109
14861013 ATCCTTTTGA
*
14861023 AACTTACCATTGCCATGTCTCGACATGGTCTTACATGGTATCCTTGCCTTATG-AA-CTCACCAA
1 AACTTACCAATGCCATGTCTCGACATGGTCTTACATGGTAT-CTTGCCTTA-GAAACCTCACCAA
14861086 -TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
64 TTGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
* * * *
14861131 AACTTATCAATGCCATGTCTTGACATGGTCTTACATGGTATTTTGCCTTAGAAACCTTACCAATT
1 AACTTACCAATGCCATGTCTCGACATGGTCTTACATGGTATCTTGCCTTAGAAACCTCACCAATT
14861196 GCCATGCCTTGGCATGGTCTTACATGG
66 GCCATGCCTTGGCATGGTCTTACATGG
14861223 TATCCTTAAA
Statistics
Matches: 84, Mismatches: 5, Indels: 5
0.89 0.05 0.05
Matches are distributed among these distances:
106 1 0.01
107 10 0.12
108 45 0.54
109 28 0.33
ACGTcount: A:0.23, C:0.25, G:0.18, T:0.34
Consensus pattern (109 bp):
AACTTACCAATGCCATGTCTCGACATGGTCTTACATGGTATCTTGCCTTAGAAACCTCACCAATT
GCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
Found at i:14861201 original size:54 final size:54
Alignment explanation
Indices: 14860976--14861225 Score: 243
Period size: 53 Copynumber: 4.7 Consensus size: 54
14860966 ACACGGGTAC
* * * *
14860976 CTTACC-ATTGCCATGACTTGTCATGGTCTTACGTGGTA---T-CCTTTTGAAA
1 CTTACCAATTGCCATGCCTTGACATGGTCTTACATGGTATTTTGCCTTTAGAAA
* * *
14861025 CTTACC-ATTGCCATGTCTCGACATGGTCTTACATGGTATCCTTGCC-TTATG-AA
1 CTTACCAATTGCCATGCCTTGACATGGTCTTACATGGTAT-TTTGCCTTTA-GAAA
* * * * *
14861078 CTCACCAA-TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGTAA
1 CTTACCAATTGCCATGCCTTGACATGGTCTTACATGGTA-TTTTGCCTT-TAGAAA
* *
14861133 CTTATCAA-TGCCATGTCTTGACATGGTCTTACATGGTATTTTGCC-TTAGAAA
1 CTTACCAATTGCCATGCCTTGACATGGTCTTACATGGTATTTTGCCTTTAGAAA
*
14861185 CCTTACCAATTGCCATGCCTTGGCATGGTCTTACATGGTAT
1 -CTTACCAATTGCCATGCCTTGACATGGTCTTACATGGTAT
14861226 CCTTAAACCC
Statistics
Matches: 166, Mismatches: 22, Indels: 21
0.79 0.11 0.10
Matches are distributed among these distances:
49 34 0.20
52 5 0.03
53 49 0.30
54 41 0.25
55 37 0.22
ACGTcount: A:0.22, C:0.24, G:0.18, T:0.36
Consensus pattern (54 bp):
CTTACCAATTGCCATGCCTTGACATGGTCTTACATGGTATTTTGCCTTTAGAAA
Found at i:14861599 original size:29 final size:29
Alignment explanation
Indices: 14861566--14861625 Score: 75
Period size: 29 Copynumber: 2.1 Consensus size: 29
14861556 TCCTTGACTC
* *
14861566 AAACTTTGGCAAAATTACACTTTTTCCCT
1 AAACTTTGACAAAATTACACTTTTGCCCT
* * *
14861595 AAACTTTTACATATTTACACTTTTGCCCT
1 AAACTTTGACAAAATTACACTTTTGCCCT
14861624 AA
1 AA
14861626 GGCTCGGAAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.32, C:0.23, G:0.05, T:0.40
Consensus pattern (29 bp):
AAACTTTGACAAAATTACACTTTTGCCCT
Found at i:14863358 original size:3 final size:3
Alignment explanation
Indices: 14863350--14863401 Score: 97
Period size: 3 Copynumber: 17.7 Consensus size: 3
14863340 AAAGAAAAAG
14863350 AAT AAT AAT AAT -AT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
14863397 AAT AA
1 AAT AA
14863402 AGAAAAAAAG
Statistics
Matches: 48, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
2 2 0.04
3 46 0.96
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:14864226 original size:43 final size:43
Alignment explanation
Indices: 14864167--14864251 Score: 143
Period size: 43 Copynumber: 2.0 Consensus size: 43
14864157 TTTATCCTAG
* * *
14864167 AAAAATAATTTAAAAAGAGGAGAAGATAATCTTGGGTTGTTGA
1 AAAAAGAATTTAAAAAGAGGAGAAGATAAACATGGGTTGTTGA
14864210 AAAAAGAATTTAAAAAGAGGAGAAGATAAACATGGGTTGTTG
1 AAAAAGAATTTAAAAAGAGGAGAAGATAAACATGGGTTGTTG
14864252 GATTTACCCT
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 39 1.00
ACGTcount: A:0.48, C:0.02, G:0.25, T:0.25
Consensus pattern (43 bp):
AAAAAGAATTTAAAAAGAGGAGAAGATAAACATGGGTTGTTGA
Found at i:14869356 original size:25 final size:25
Alignment explanation
Indices: 14869328--14869386 Score: 84
Period size: 25 Copynumber: 2.4 Consensus size: 25
14869318 AACCTACAGC
* *
14869328 AGACCCAAACCTAATAAA-TCTTACA
1 AGACCCAAACCCAA-AAACCCTTACA
14869353 AGACCCAAACCCAAAAACCCTTACA
1 AGACCCAAACCCAAAAACCCTTACA
14869378 AGACCCAAA
1 AGACCCAAA
14869387 ACTCATGAAG
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
24 3 0.10
25 28 0.90
ACGTcount: A:0.49, C:0.34, G:0.05, T:0.12
Consensus pattern (25 bp):
AGACCCAAACCCAAAAACCCTTACA
Found at i:14870731 original size:28 final size:29
Alignment explanation
Indices: 14870700--14870764 Score: 71
Period size: 28 Copynumber: 2.3 Consensus size: 29
14870690 AAAAATTGTT
* *
14870700 TTATTTTTTTTCTATAT-TATTT-TATGTA
1 TTATTTATTTTATATATATATTTATAT-TA
**
14870728 TTATACATTTTATATATATATTTATATTA
1 TTATTTATTTTATATATATATTTATATTA
14870757 TTATTTAT
1 TTATTTAT
14870765 ATACATACCT
Statistics
Matches: 29, Mismatches: 6, Indels: 3
0.76 0.16 0.08
Matches are distributed among these distances:
28 13 0.45
29 13 0.45
30 3 0.10
ACGTcount: A:0.29, C:0.03, G:0.02, T:0.66
Consensus pattern (29 bp):
TTATTTATTTTATATATATATTTATATTA
Found at i:14870753 original size:12 final size:13
Alignment explanation
Indices: 14870736--14870767 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
14870726 TATTATACAT
14870736 TTTATATATA-TA
1 TTTATATATATTA
14870748 TTTATAT-TATTA
1 TTTATATATATTA
14870760 TTTATATA
1 TTTATATA
14870768 CATACCTTAC
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
11 2 0.11
12 16 0.89
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (13 bp):
TTTATATATATTA
Found at i:14873705 original size:15 final size:15
Alignment explanation
Indices: 14873680--14873716 Score: 51
Period size: 14 Copynumber: 2.5 Consensus size: 15
14873670 ATCGATACCT
14873680 TTTGCATTCATA-CA
1 TTTGCATTCATAGCA
14873694 TTTGCATCTCATAGCA
1 TTTGCAT-TCATAGCA
14873710 TTT-CATT
1 TTTGCATT
14873717 GCATCATTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
14 8 0.38
15 8 0.38
16 5 0.24
ACGTcount: A:0.24, C:0.22, G:0.08, T:0.46
Consensus pattern (15 bp):
TTTGCATTCATAGCA
Found at i:14878522 original size:44 final size:45
Alignment explanation
Indices: 14878474--14879098 Score: 445
Period size: 44 Copynumber: 14.2 Consensus size: 45
14878464 CAAAGAAAAA
* * *
14878474 AGATTTGGCATCCCTGTGTTTATTGGGAACAAG-TTGAAGATAGT
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAAGATCGAAGATAGC
14878518 AGATTTGGCATCCCTGTGTTTATAGGGAAC-AGATCGAAGATAGC
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAAGATCGAAGATAGC
* * * * * * **
14878562 AGATCTGACA-CTCCTGTGCTTACAGCGAAGC-AGATCAAAGATTTC
1 AGATTTGGCATC-CCTGTGTTTATAGGGAA-CAAGATCGAAGATAGC
* * * *
14878607 AGA-ATGGCATCTCTGTGTTTATTGGGAACAAG-TTGAAGATAGC
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAAGATCGAAGATAGC
** *
14878650 AGATTTGGCATCCCTGTGGCTATAGGGAA-TAGATCGAAGATAGC
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAAGATCGAAGATAGC
* * * * * * **
14878694 AGATCTGACA-CTCATGTGCTTACAGTGAAGC-AGATCGAAGATTTC
1 AGATTTGGCATC-CCTGTGTTTATAGGGAA-CAAGATCGAAGATAGC
* * *
14878739 AGCA--TGGCATCCCTATGTTTATGGGGAACAAG-TTGAAGATAGC
1 AG-ATTTGGCATCCCTGTGTTTATAGGGAACAAGATCGAAGATAGC
14878782 AGATTTGGCATCCCTGTGTTTATAGGGAAC-AGATCGAAGATAGC
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAAGATCGAAGATAGC
* * * * ***
14878826 AGATCTGACA-CTCCTGT-TCTTACAGCGAA-ACAGATCGAAGATTTT
1 AGATTTGGCATC-CCTGTGT-TTATAGGGAACA-AGATCGAAGATAGC
* *
14878871 AGCA--TGGCATCCCTGTGTTTATTGGGAACAAG-TTG-AGAATAGC
1 AG-ATTTGGCATCCCTGTGTTTATAGGGAACAAGATCGAAG-ATAGC
*
14878914 AGATTTGGCATCCCTGTGTTTATAGGGAAC-AGATCAAAGATAGC
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAAGATCGAAGATAGC
* * * * * * * * ***
14878958 AGATCTGACGTTCCTGTGCTTACAGCGAA-ACAGATCAAAGATTTT
1 AGATTTGGCATCCCTGTGTTTATAGGGAACA-AGATCGAAGATAGC
** * *
14879003 A-ACATGGCATCCCTGTGTTTATAGGGAACAAG-TTGAAGATAGT
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAAGATCGAAGATAGC
* * *
14879046 AGATTTGGCATCCCCGTGTTTACAGGGAACAA-ATTGAAGACATAGC
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAAGATCGAAG--ATAGC
14879092 AGATTTG
1 AGATTTG
14879099 ACTTTCGGAT
Statistics
Matches: 449, Mismatches: 96, Indels: 70
0.73 0.16 0.11
Matches are distributed among these distances:
42 4 0.01
43 48 0.11
44 322 0.72
45 62 0.14
46 13 0.03
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (45 bp):
AGATTTGGCATCCCTGTGTTTATAGGGAACAAGATCGAAGATAGC
Found at i:14878716 original size:132 final size:132
Alignment explanation
Indices: 14878479--14879100 Score: 942
Period size: 132 Copynumber: 4.7 Consensus size: 132
14878469 AAAAAAGATT
*
14878479 TGGCATCCCTGTGTTTATTGGGAACAAGTTGAAGATAGTAGATTTGGCATCCCTGTGTTTATAGG
1 TGGCATCCCTGTGTTTATTGGGAACAAGTTGAAGATAGCAGATTTGGCATCCCTGTGTTTATAGG
*
14878544 GAACAGATCGAAGATAGCAGATCTGACACTCCTGTGCTTACAGCGAAGCAGATCAAAGATTTCAG
66 GAACAGATCGAAGATAGCAGATCTGACACTCCTGTGCTTACAGCGAAACAGATCAAAGATTTCAG
14878609 AA
131 AA
* **
14878611 TGGCATCTCTGTGTTTATTGGGAACAAGTTGAAGATAGCAGATTTGGCATCCCTGTGGCTATAGG
1 TGGCATCCCTGTGTTTATTGGGAACAAGTTGAAGATAGCAGATTTGGCATCCCTGTGTTTATAGG
* * * * *
14878676 GAATAGATCGAAGATAGCAGATCTGACACTCATGTGCTTACAGTGAAGCAGATCGAAGATTTCAG
66 GAACAGATCGAAGATAGCAGATCTGACACTCCTGTGCTTACAGCGAAACAGATCAAAGATTTCAG
*
14878741 CA
131 AA
* *
14878743 TGGCATCCCTATGTTTATGGGGAACAAGTTGAAGATAGCAGATTTGGCATCCCTGTGTTTATAGG
1 TGGCATCCCTGTGTTTATTGGGAACAAGTTGAAGATAGCAGATTTGGCATCCCTGTGTTTATAGG
* * *
14878808 GAACAGATCGAAGATAGCAGATCTGACACTCCTGTTCTTACAGCGAAACAGATCGAAGATTTTAG
66 GAACAGATCGAAGATAGCAGATCTGACACTCCTGTGCTTACAGCGAAACAGATCAAAGATTTCAG
*
14878873 CA
131 AA
14878875 TGGCATCCCTGTGTTTATTGGGAACAAGTTG-AGAATAGCAGATTTGGCATCCCTGTGTTTATAG
1 TGGCATCCCTGTGTTTATTGGGAACAAGTTGAAG-ATAGCAGATTTGGCATCCCTGTGTTTATAG
* ** *
14878939 GGAACAGATCAAAGATAGCAGATCTGACGTTCCTGTGCTTACAGCGAAACAGATCAAAGATTTTA
65 GGAACAGATCGAAGATAGCAGATCTGACACTCCTGTGCTTACAGCGAAACAGATCAAAGATTTCA
14879004 -ACA
130 GA-A
* * * *
14879007 TGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGTAGATTTGGCATCCCCGTGTTTACAGG
1 TGGCATCCCTGTGTTTATTGGGAACAAGTTGAAGATAGCAGATTTGGCATCCCTGTGTTTATAGG
* * *
14879072 GAACAAATTGAAGACATAGCAGATTTGAC
66 GAACAGATCGAAG--ATAGCAGATCTGAC
14879101 TTTCGGATGT
Statistics
Matches: 449, Mismatches: 36, Indels: 8
0.91 0.07 0.02
Matches are distributed among these distances:
131 2 0.00
132 432 0.96
133 2 0.00
134 13 0.03
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.27
Consensus pattern (132 bp):
TGGCATCCCTGTGTTTATTGGGAACAAGTTGAAGATAGCAGATTTGGCATCCCTGTGTTTATAGG
GAACAGATCGAAGATAGCAGATCTGACACTCCTGTGCTTACAGCGAAACAGATCAAAGATTTCAG
AA
Found at i:14879683 original size:25 final size:25
Alignment explanation
Indices: 14879649--14879707 Score: 93
Period size: 25 Copynumber: 2.4 Consensus size: 25
14879639 AACCTACAGC
14879649 AGACCCAAACCCAATAAA-CCTTACA
1 AGACCCAAACCCAA-AAACCCTTACA
*
14879674 AGACCCAAACCCAAAAACCCTTTCA
1 AGACCCAAACCCAAAAACCCTTACA
14879699 AGACCCAAA
1 AGACCCAAA
14879708 ACTCATGAAG
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
24 3 0.09
25 29 0.91
ACGTcount: A:0.47, C:0.37, G:0.05, T:0.10
Consensus pattern (25 bp):
AGACCCAAACCCAAAAACCCTTACA
Found at i:14881067 original size:2 final size:2
Alignment explanation
Indices: 14881060--14881121 Score: 90
Period size: 2 Copynumber: 31.5 Consensus size: 2
14881050 TTATACATTT
*
14881060 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TT TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* *
14881102 TA TA T- TA TT TA TA TA CA TA T
1 TA TA TA TA TA TA TA TA TA TA T
14881122 CTTATCATCC
Statistics
Matches: 53, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
1 1 0.02
2 52 0.98
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.53
Consensus pattern (2 bp):
TA
Found at i:14885005 original size:18 final size:19
Alignment explanation
Indices: 14884959--14885022 Score: 55
Period size: 18 Copynumber: 3.6 Consensus size: 19
14884949 ATACATGTAT
*
14884959 GTAATTACTTATTATTTAA
1 GTAATTAATTATTATTTAA
* *
14884978 GTAAAT-ATTATTATTTTA
1 GTAATTAATTATTATTTAA
*
14884996 -TAATTAATTA--ATTAAA
1 GTAATTAATTATTATTTAA
*
14885012 GTAAATAATTA
1 GTAATTAATTA
14885023 AATAAAGACA
Statistics
Matches: 36, Mismatches: 7, Indels: 6
0.73 0.14 0.12
Matches are distributed among these distances:
16 4 0.11
17 13 0.36
18 14 0.39
19 5 0.14
ACGTcount: A:0.45, C:0.02, G:0.05, T:0.48
Consensus pattern (19 bp):
GTAATTAATTATTATTTAA
Found at i:14885186 original size:23 final size:25
Alignment explanation
Indices: 14885148--14885194 Score: 80
Period size: 23 Copynumber: 2.0 Consensus size: 25
14885138 ATTAAAACAT
14885148 AAAAGTAAATGAAAGAAAAGAAAAG
1 AAAAGTAAATGAAAGAAAAGAAAAG
14885173 AAAAG-AAAT-AAAGAAAAGAAAA
1 AAAAGTAAATGAAAGAAAAGAAAA
14885195 AGAGAATGAA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
23 13 0.59
24 4 0.18
25 5 0.23
ACGTcount: A:0.77, C:0.00, G:0.17, T:0.06
Consensus pattern (25 bp):
AAAAGTAAATGAAAGAAAAGAAAAG
Found at i:14885200 original size:13 final size:13
Alignment explanation
Indices: 14885148--14885193 Score: 53
Period size: 13 Copynumber: 3.6 Consensus size: 13
14885138 ATTAAAACAT
14885148 AAAAGTAAATGAAAG
1 AAAAG-AAAT-AAAG
14885163 AAAAG--A-AAAG
1 AAAAGAAATAAAG
14885173 AAAAGAAATAAAG
1 AAAAGAAATAAAG
14885186 AAAAGAAA
1 AAAAGAAA
14885194 AAGAGAATGA
Statistics
Matches: 28, Mismatches: 0, Indels: 8
0.78 0.00 0.22
Matches are distributed among these distances:
10 9 0.32
12 2 0.07
13 12 0.43
15 5 0.18
ACGTcount: A:0.76, C:0.00, G:0.17, T:0.07
Consensus pattern (13 bp):
AAAAGAAATAAAG
Found at i:14886490 original size:18 final size:17
Alignment explanation
Indices: 14886465--14886500 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 17
14886455 GTACTAAAAA
14886465 ATTTACTGCTACTGAAT
1 ATTTACTGCTACTGAAT
*
14886482 ATTTAACTGTTACTGAAT
1 ATTT-ACTGCTACTGAAT
14886500 A
1 A
14886501 AATGAATAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 4 0.24
18 13 0.76
ACGTcount: A:0.33, C:0.14, G:0.11, T:0.42
Consensus pattern (17 bp):
ATTTACTGCTACTGAAT
Found at i:14889041 original size:15 final size:15
Alignment explanation
Indices: 14889018--14889051 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
14889008 CCATTTGGGG
*
14889018 TTTAGGATTTTAGGA
1 TTTAAGATTTTAGGA
*
14889033 TTTAAGATTTTAGGG
1 TTTAAGATTTTAGGA
14889048 TTTA
1 TTTA
14889052 GGGTTTAGGT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.26, C:0.00, G:0.24, T:0.50
Consensus pattern (15 bp):
TTTAAGATTTTAGGA
Found at i:14891183 original size:28 final size:27
Alignment explanation
Indices: 14891120--14891189 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
14891110 ATAGTGAGTC
14891120 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
14891147 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
14891175 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
14891190 GTACAAATTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:14898998 original size:28 final size:27
Alignment explanation
Indices: 14898935--14899004 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
14898925 ATAGTGAGTC
14898935 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
14898962 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
14898990 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
14899005 GTACAAATTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:14905878 original size:40 final size:39
Alignment explanation
Indices: 14905713--14905896 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
14905703 AAATTGAATG
* * *
14905713 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
14905753 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
14905793 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
14905833 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
14905872 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
14905897 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:14905921 original size:80 final size:81
Alignment explanation
Indices: 14905753--14905941 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
14905743 GCTGGAAATT
* * * *
14905753 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
14905818 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
14905834 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
14905897 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
14905913 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
14905942 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:14914713 original size:18 final size:20
Alignment explanation
Indices: 14914690--14914734 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 20
14914680 TGTGGTGGGG
14914690 CCGTGTGG-TCA-CACACGC
1 CCGTGTGGCTCAGCACACGC
* *
14914708 CCGTGTGGCTTAGGACACGC
1 CCGTGTGGCTCAGCACACGC
14914728 CCGTGTG
1 CCGTGTG
14914735 CAACACTGAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
18 8 0.35
19 2 0.09
20 13 0.57
ACGTcount: A:0.13, C:0.33, G:0.33, T:0.20
Consensus pattern (20 bp):
CCGTGTGGCTCAGCACACGC
Found at i:14924321 original size:49 final size:47
Alignment explanation
Indices: 14924201--14924341 Score: 228
Period size: 47 Copynumber: 3.0 Consensus size: 47
14924191 TGTATGAGAT
* *
14924201 GTATATATGTGATACGGCCTAATGGCCAATGTGATGAATGTGAAAGA
1 GTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGA
* *
14924248 GTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGT
1 GTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGA
14924295 GTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 G--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
14924342 CATATGTGTG
Statistics
Matches: 87, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
47 44 0.51
49 43 0.49
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (47 bp):
GTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGA
Found at i:14924428 original size:18 final size:18
Alignment explanation
Indices: 14924405--14924440 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
14924395 GTGTGATATG
*
14924405 TATATGTGGTAAAGCCTA
1 TATATGTGATAAAGCCTA
*
14924423 TATATGTGATAAGGCCTA
1 TATATGTGATAAAGCCTA
14924441 ATGGCCGATG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.33, C:0.11, G:0.22, T:0.33
Consensus pattern (18 bp):
TATATGTGATAAAGCCTA
Done.