Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr02 99090824
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 99090824
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 317 characters in sequence are not A, C, G, or T
File 53 of 318
Found at i:14924428 original size:123 final size:123
Alignment explanation
Indices: 14924298--14924666 Score: 693
Period size: 123 Copynumber: 3.0 Consensus size: 123
14924288 TGAAGGTGTA
* *
14924298 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAACATATGTGTGATACGTATGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAACATATGTGTGATATGTATATG
14924363 TGGTAAAGCCGAATGGCTAATGTGAAACATATGTGTGATATGTATATGTGGTAAAGCC
66 TGGTAAAGCCGAATGGCTAATGTGAAACATATGTGTGATATGTATATGTGGTAAAGCC
14924421 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAACATATGTGTGATATGTATATG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAACATATGTGTGATATGTATATG
*
14924486 TGGTAAAGCCGAATGGCTAATGTGAAACATATGTGTGATATGTTTATGTGGTAAAGCC
66 TGGTAAAGCCGAATGGCTAATGTGAAACATATGTGTGATATGTATATGTGGTAAAGCC
14924544 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAACATATGTGTGATATGTATATG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAACATATGTGTGATATGTATATG
* *
14924609 TGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATGTGTGGTAAAGCC
66 TGGTAAAGCCGAATGGCTAATGTGAAACATATGTGTGATATGTATATGTGGTAAAGCC
14924667 GAATGGCTAA
Statistics
Matches: 240, Mismatches: 6, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
123 240 1.00
ACGTcount: A:0.32, C:0.09, G:0.27, T:0.32
Consensus pattern (123 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAACATATGTGTGATATGTATATG
TGGTAAAGCCGAATGGCTAATGTGAAACATATGTGTGATATGTATATGTGGTAAAGCC
Found at i:14924633 original size:48 final size:48
Alignment explanation
Indices: 14924579--14924682 Score: 190
Period size: 48 Copynumber: 2.2 Consensus size: 48
14924569 CGATGTGATG
14924579 AATGTGAAACATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
1 AATGTGAAACATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
* *
14924627 AATGTGAAATATATGTGTGATATGTATGTGTGGTAAAGCCGAATGGCT
1 AATGTGAAACATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
14924675 AATGTGAA
1 AATGTGAA
14924683 TGTTGTAACA
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 54 1.00
ACGTcount: A:0.34, C:0.07, G:0.28, T:0.32
Consensus pattern (48 bp):
AATGTGAAACATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
Found at i:14924776 original size:37 final size:37
Alignment explanation
Indices: 14924722--14924849 Score: 229
Period size: 37 Copynumber: 3.4 Consensus size: 37
14924712 AACTTGGAAA
*
14924722 TATGTTCCGGGTGAGACCCGATGACTACGTGTGGAGAT
1 TATG-TCCGGGTAAGACCCGATGACTACGTGTGGAGAT
*
14924760 TATGTTCGGGTAAGACCCGATGACTACGTGTGGAGAT
1 TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
14924797 TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
1 TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
14924834 TATGTCCGGGTAAGAC
1 TATGTCCGGGTAAGAC
14924850 TTCGTAATAA
Statistics
Matches: 87, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
37 83 0.95
38 4 0.05
ACGTcount: A:0.23, C:0.18, G:0.33, T:0.26
Consensus pattern (37 bp):
TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
Found at i:14937087 original size:162 final size:166
Alignment explanation
Indices: 14936793--14937128 Score: 522
Period size: 162 Copynumber: 2.0 Consensus size: 166
14936783 GAGTCTTGCT
* * * *
14936793 TCAATTCTGCCAAATTGACACGGCCGTGTGGTCTGCCCTTGTGAGGAAGTCCAGGCTATGTTGAT
1 TCAAATCTGCCAAATTGACAAGGCCGTATGGTCTGCCCTTGTGAGGAAGTCCAGGCCATGTTGAT
* *
14936858 TTCATACATTGCCCTATTTTCTGCGTTTTTGGCCCGTTTCTCGTTCCTTTCGCTCTCCTATGCTC
66 TT-ATACA-GGCCCTATTTTCTGCATTTTTGGCCCGTTTCTCGTTCCTTTCGCTCTCCTATGCTC
14936923 ACCTAAGTATAAAACATGAAATTAAGGCATTAGGAGCA
129 ACCTAAGTATAAAACATGAAATTAAGGCATTAGGAGCA
14936961 TCAAATCTGCCAAATTGACAAGGCCGTATGGTCTG-CCTGTGTGAGGAAGTCCAGGCCATGTTGA
1 TCAAATCTGCCAAATTGACAAGGCCGTATGGTCTGCCCT-TGTGAGGAAGTCCAGGCCATGTTGA
* *
14937025 -TT-T-C-GGTCCTATTTTCT-CTATTTTTGGCCTGTTTCTCGTTCCTTTCGCTCTCCTATGCTC
65 TTTATACAGGCCCTATTTTCTGC-ATTTTTGGCCCGTTTCTCGTTCCTTTCGCTCTCCTATGCTC
14937085 ACCTAAGTATAAAACATGAAATTAAGGCATTAGGAGCA
129 ACCTAAGTATAAAACATGAAATTAAGGCATTAGGAGCA
14937123 TCAAAT
1 TCAAAT
14937129 TCATCAATTC
Statistics
Matches: 158, Mismatches: 8, Indels: 10
0.90 0.05 0.06
Matches are distributed among these distances:
161 1 0.01
162 94 0.59
164 1 0.01
165 1 0.01
167 5 0.03
168 56 0.35
ACGTcount: A:0.23, C:0.24, G:0.20, T:0.34
Consensus pattern (166 bp):
TCAAATCTGCCAAATTGACAAGGCCGTATGGTCTGCCCTTGTGAGGAAGTCCAGGCCATGTTGAT
TTATACAGGCCCTATTTTCTGCATTTTTGGCCCGTTTCTCGTTCCTTTCGCTCTCCTATGCTCAC
CTAAGTATAAAACATGAAATTAAGGCATTAGGAGCA
Found at i:14940431 original size:20 final size:19
Alignment explanation
Indices: 14940415--14940452 Score: 60
Period size: 20 Copynumber: 2.0 Consensus size: 19
14940405 TAAATGATAG
14940415 AATA-ATGAGAAAAATGAA
1 AATAGATGAGAAAAATGAA
14940433 AATAGTATGAGAAAAATGAA
1 AATAG-ATGAGAAAAATGAA
14940453 GATTTTTTTG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 4 0.22
20 14 0.78
ACGTcount: A:0.63, C:0.00, G:0.18, T:0.18
Consensus pattern (19 bp):
AATAGATGAGAAAAATGAA
Found at i:14947415 original size:30 final size:31
Alignment explanation
Indices: 14947379--14947436 Score: 91
Period size: 30 Copynumber: 1.9 Consensus size: 31
14947369 TTCCCGAGCC
14947379 TAGGGGCAAAAGTGTAATTATG-CAAAAGTT
1 TAGGGGCAAAAGTGTAATTATGCCAAAAGTT
* *
14947409 TAGGGGCAAAATTGTAATTTTGCCAAAA
1 TAGGGGCAAAAGTGTAATTATGCCAAAA
14947437 TTTGAGTTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
30 20 0.80
31 5 0.20
ACGTcount: A:0.40, C:0.09, G:0.24, T:0.28
Consensus pattern (31 bp):
TAGGGGCAAAAGTGTAATTATGCCAAAAGTT
Found at i:14947910 original size:46 final size:46
Alignment explanation
Indices: 14947857--14948032 Score: 189
Period size: 46 Copynumber: 3.8 Consensus size: 46
14947847 TGGTTGAGCA
*
14947857 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * * *
14947903 TCTGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAAC-AAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGAA--CG
*
14947950 TCCGAACTCGTTGAGTTGAGTCCGAGTTTACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * * *
14947996 CCCGAGCTCGTTGAGTTGAGTCTGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
14948033 GCGGGTTACA
Statistics
Matches: 106, Mismatches: 15, Indels: 18
0.76 0.11 0.13
Matches are distributed among these distances:
43 4 0.04
45 4 0.04
46 62 0.58
47 28 0.26
48 4 0.04
50 4 0.04
ACGTcount: A:0.21, C:0.19, G:0.30, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:14948013 original size:93 final size:93
Alignment explanation
Indices: 14947854--14948025 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
14947844 GGATGGTTGA
* * *
14947854 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCTGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
14947919 TGAGTCCGAGTTCGTGAGATGTAACAAG
66 TGAGTCCGAGTTCGTGAGATGTAACAAG
* *
14947947 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTTACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
*
14948012 TGAGTCTGAGTTCG
66 TGAGTCCGAGTTCG
14948026 CTTATGGGCG
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.20, G:0.30, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACAAG
Found at i:14964878 original size:42 final size:43
Alignment explanation
Indices: 14964815--14964932 Score: 161
Period size: 43 Copynumber: 2.8 Consensus size: 43
14964805 CATTTATGAT
* *
14964815 TTACAAGTAAGACCACATCTGGGACGTTGGCATC-ATATTTAA
1 TTACATGTAAGACCACGTCTGGGACGTTGGCATCGATATTTAA
* *
14964857 TTTCGTGTAAGACC-CTGTCTGGGACAG-TGGCATCGATATTTAA
1 TTACATGTAAGACCAC-GTCTGGGAC-GTTGGCATCGATATTTAA
14964900 TTACATGTAAGACCACGTCTGGGACGTTGGCAT
1 TTACATGTAAGACCACGTCTGGGACGTTGGCAT
14964933 TGTATGAGCT
Statistics
Matches: 65, Mismatches: 6, Indels: 9
0.81 0.08 0.11
Matches are distributed among these distances:
41 1 0.02
42 27 0.42
43 36 0.55
44 1 0.02
ACGTcount: A:0.27, C:0.19, G:0.24, T:0.30
Consensus pattern (43 bp):
TTACATGTAAGACCACGTCTGGGACGTTGGCATCGATATTTAA
Found at i:14977319 original size:36 final size:36
Alignment explanation
Indices: 14977272--14977385 Score: 116
Period size: 36 Copynumber: 3.3 Consensus size: 36
14977262 TGTAAAATGG
14977272 ATTTAGCCTGGAAGGGTAATCCGAATTAAGGTCTGA
1 ATTTAGCCTGGAAGGGTAATCCGAATTAAGGTCTGA
*** * *
14977308 ATTTAGCCTGGACTAGTAAT-TGTAA--AA----TGG
1 ATTTAGCCTGGAAGGGTAATCCG-AATTAAGGTCTGA
*
14977338 ATTTAGCCTGGAAGGGTAATCCGAATTAGGGTCTGA
1 ATTTAGCCTGGAAGGGTAATCCGAATTAAGGTCTGA
14977374 ATTTAGCCTGGA
1 ATTTAGCCTGGA
14977386 CTAGTAATTC
Statistics
Matches: 59, Mismatches: 11, Indels: 16
0.69 0.13 0.19
Matches are distributed among these distances:
30 21 0.36
31 1 0.02
32 1 0.02
34 2 0.03
35 1 0.02
36 33 0.56
ACGTcount: A:0.30, C:0.13, G:0.27, T:0.30
Consensus pattern (36 bp):
ATTTAGCCTGGAAGGGTAATCCGAATTAAGGTCTGA
Found at i:14977357 original size:30 final size:31
Alignment explanation
Indices: 14977262--14977358 Score: 81
Period size: 30 Copynumber: 3.0 Consensus size: 31
14977252 AAAGTATATG
14977262 TGTAAAATGGATTTAGCCTGGAAGGGTAATC
1 TGTAAAATGGATTTAGCCTGGAAGGGTAATC
* * ***
14977293 CG-AATTAAGGTCTGAATTTAGCCTGGACTAGTAAT-
1 TGTAA--AA----TGGATTTAGCCTGGAAGGGTAATC
14977328 TGTAAAATGGATTTAGCCTGGAAGGGTAATC
1 TGTAAAATGGATTTAGCCTGGAAGGGTAATC
14977359 CGAATTAGGG
Statistics
Matches: 48, Mismatches: 10, Indels: 16
0.65 0.14 0.22
Matches are distributed among these distances:
30 21 0.44
31 1 0.02
32 2 0.04
34 2 0.04
35 1 0.02
36 21 0.44
ACGTcount: A:0.32, C:0.11, G:0.27, T:0.30
Consensus pattern (31 bp):
TGTAAAATGGATTTAGCCTGGAAGGGTAATC
Found at i:14977371 original size:66 final size:66
Alignment explanation
Indices: 14977262--14977394 Score: 257
Period size: 66 Copynumber: 2.0 Consensus size: 66
14977252 AAAGTATATG
14977262 TGTAAAATGGATTTAGCCTGGAAGGGTAATCCGAATTAAGGTCTGAATTTAGCCTGGACTAGTAA
1 TGTAAAATGGATTTAGCCTGGAAGGGTAATCCGAATTAAGGTCTGAATTTAGCCTGGACTAGTAA
14977327 T
66 T
*
14977328 TGTAAAATGGATTTAGCCTGGAAGGGTAATCCGAATTAGGGTCTGAATTTAGCCTGGACTAGTAA
1 TGTAAAATGGATTTAGCCTGGAAGGGTAATCCGAATTAAGGTCTGAATTTAGCCTGGACTAGTAA
14977393 T
66 T
14977394 T
1 T
14977395 CAAATCCAAG
Statistics
Matches: 66, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
66 66 1.00
ACGTcount: A:0.31, C:0.12, G:0.26, T:0.31
Consensus pattern (66 bp):
TGTAAAATGGATTTAGCCTGGAAGGGTAATCCGAATTAAGGTCTGAATTTAGCCTGGACTAGTAA
T
Found at i:14981223 original size:18 final size:19
Alignment explanation
Indices: 14981200--14981236 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
14981190 ATTTAAAATT
*
14981200 TATTTTTTT-GTAATTTTA
1 TATTTTTTTAATAATTTTA
14981218 TATTTTTTTAATAATTTTA
1 TATTTTTTTAATAATTTTA
14981237 AAAATATTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 9 0.53
19 8 0.47
ACGTcount: A:0.27, C:0.00, G:0.03, T:0.70
Consensus pattern (19 bp):
TATTTTTTTAATAATTTTA
Found at i:14982452 original size:106 final size:106
Alignment explanation
Indices: 14982325--14982536 Score: 361
Period size: 106 Copynumber: 2.0 Consensus size: 106
14982315 CATGCGTAAT
* * *
14982325 TTGCGACCTGCAAGTTAGTGGCAATGGTTCATCTTCCTGGAATGCAAGGGGTAAGAACAACAAAT
1 TTGCAACCTGCAAGTTAGTGGCAACGGTTCATCTTCCTGGAATGCAAGGGCTAAGAACAACAAAT
* * *
14982390 AGAAAAATGACAAGCAAGAATAATTTAAAATCATGCAATGG
66 AGAAAAACGACAACCAAGAATAATATAAAATCATGCAATGG
14982431 TTGCAACCTGCAAGTTAGTGGCAACGGTTCATCTTCCTGGAATGCAAGGGCTAAGAACAACAAAT
1 TTGCAACCTGCAAGTTAGTGGCAACGGTTCATCTTCCTGGAATGCAAGGGCTAAGAACAACAAAT
*
14982496 AGAAAAACGACAACCAAGAATCATATAAAATCATGCAATGG
66 AGAAAAACGACAACCAAGAATAATATAAAATCATGCAATGG
14982537 CAAATGTGAT
Statistics
Matches: 99, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
106 99 1.00
ACGTcount: A:0.40, C:0.17, G:0.21, T:0.21
Consensus pattern (106 bp):
TTGCAACCTGCAAGTTAGTGGCAACGGTTCATCTTCCTGGAATGCAAGGGCTAAGAACAACAAAT
AGAAAAACGACAACCAAGAATAATATAAAATCATGCAATGG
Found at i:14985211 original size:32 final size:29
Alignment explanation
Indices: 14985175--14985256 Score: 94
Period size: 29 Copynumber: 2.7 Consensus size: 29
14985165 ACCAACTCAG
14985175 GTTCTAAATTTATTGACCTTTG-ACTAAATGAA
1 GTTCTAAATTTATTGACCTTTGTAC--AA--AA
***
14985207 GTTCTAAATTTATTGACAAATGTACAAAA
1 GTTCTAAATTTATTGACCTTTGTACAAAA
14985236 GTTCTAAATTTATTGACCTTT
1 GTTCTAAATTTATTGACCTTT
14985257 TAGAACACCT
Statistics
Matches: 43, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
29 20 0.47
31 2 0.05
32 19 0.44
33 2 0.05
ACGTcount: A:0.35, C:0.12, G:0.11, T:0.41
Consensus pattern (29 bp):
GTTCTAAATTTATTGACCTTTGTACAAAA
Found at i:14986309 original size:97 final size:98
Alignment explanation
Indices: 14986177--14986355 Score: 333
Period size: 97 Copynumber: 1.8 Consensus size: 98
14986167 AGCTAATATT
14986177 GGAGAAGTAAAGTTTTAAGTAAAAAATGAAAAATTAAAGATTCTTAAAGTAGCAAAAAATGGAAA
1 GGAGAAGTAAAGTTTTAAGTAAAAAATGAAAAATTAAAGATTCTTAAAGTAGCAAAAAATGGAAA
14986242 TCCTACAGAAATAAGGCCCTAGCTCGTATTAGA
66 TCCTACAGAAATAAGGCCCTAGCTCGTATTAGA
* *
14986275 GGAGAGGTAAAG-TTTCAGTAAAAAATGAAAAATTAAAGATTCTTAAAGTAGCAAAAAATGGAAA
1 GGAGAAGTAAAGTTTTAAGTAAAAAATGAAAAATTAAAGATTCTTAAAGTAGCAAAAAATGGAAA
14986339 TCCTACAGAAATAAGGC
66 TCCTACAGAAATAAGGC
14986356 ACCCTAAAAA
Statistics
Matches: 79, Mismatches: 2, Indels: 1
0.96 0.02 0.01
Matches are distributed among these distances:
97 68 0.86
98 11 0.14
ACGTcount: A:0.49, C:0.09, G:0.19, T:0.22
Consensus pattern (98 bp):
GGAGAAGTAAAGTTTTAAGTAAAAAATGAAAAATTAAAGATTCTTAAAGTAGCAAAAAATGGAAA
TCCTACAGAAATAAGGCCCTAGCTCGTATTAGA
Found at i:14990006 original size:127 final size:127
Alignment explanation
Indices: 14989780--14990034 Score: 501
Period size: 127 Copynumber: 2.0 Consensus size: 127
14989770 GAAACCAGTT
14989780 TAATCATAAAGAAGAAAAATATGTATAAACATAGTAAGTTTGTGCCTGTGCATGTGAGCCACATT
1 TAATCATAAAGAAGAAAAATATGTATAAACATAGTAAGTTTGTGCCTGTGCATGTGAGCCACATT
14989845 GAAACTATGAACTTAACTAAATGCAAACGAAAAGACCTTTGTCTGGAGAGGGCATGGGAAAG
66 GAAACTATGAACTTAACTAAATGCAAACGAAAAGACCTTTGTCTGGAGAGGGCATGGGAAAG
*
14989907 TAATCATAAAGAAGAAAAATATGTATAAACATAGTGAGTTTGTGCCTGTGCATGTGAGCCACATT
1 TAATCATAAAGAAGAAAAATATGTATAAACATAGTAAGTTTGTGCCTGTGCATGTGAGCCACATT
14989972 GAAACTATGAACTTAACTAAATGCAAACGAAAAGACCTTTGTCTGGAGAGGGCATGGGAAAG
66 GAAACTATGAACTTAACTAAATGCAAACGAAAAGACCTTTGTCTGGAGAGGGCATGGGAAAG
14990034 T
1 T
14990035 GAACACCCAT
Statistics
Matches: 127, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
127 127 1.00
ACGTcount: A:0.40, C:0.13, G:0.22, T:0.25
Consensus pattern (127 bp):
TAATCATAAAGAAGAAAAATATGTATAAACATAGTAAGTTTGTGCCTGTGCATGTGAGCCACATT
GAAACTATGAACTTAACTAAATGCAAACGAAAAGACCTTTGTCTGGAGAGGGCATGGGAAAG
Found at i:14991095 original size:197 final size:197
Alignment explanation
Indices: 14990761--14991128 Score: 560
Period size: 197 Copynumber: 1.9 Consensus size: 197
14990751 TTAATTGTAG
*
14990761 AACAAAAGCACAAACCAAATAAGCAACAAAAACTTAAAATTCAGAAGTTTAATGCACTTCATTAG
1 AACAAAAGCACAAACCAAATAAACAACAAAAACTTAAAATTCAGAAGTTTAATGCACTTCATTAG
* * *
14990826 CTTATGAGTTAAGAGAAGGGGGACTTCTAATAAATTGTACCAACAGATTCACATTTCAAAAAGGA
66 CTTATGAATTAAGAAAAAGGGGACTTCTAATAAATTGTACCAACAGATTCACATTTCAAAAAGGA
* * * *
14990891 TCAATTTAC-TGGATTAGCCTTTGGATAGAAGATTAAGCTCTAGAGAGAATTAATAAAATGTAGA
131 TCAATTTACTTGAATTACCCCTTGAATAGAAGATTAAGCTCTAGAGAGAATTAATAAAATGTAGA
14990955 AC
196 AC
** * * *
14990957 AACAAAAGTGCAAACCAAATAAACGAA-AAAAACTTTGATATTCAGAAGTTTAATGTACTTCATT
1 AACAAAAGCACAAACCAAATAAAC-AACAAAAAC-TTAAAATTCAGAAGTTTAATGCACTTCATT
* **
14991021 ATCTTATGAATTAAGAAAAAGGGGACTTCTAATAAATTGTACGTACAGATTCACATTTCAAAAAG
64 AGCTTATGAATTAAGAAAAAGGGGACTTCTAATAAATTGTACCAACAGATTCACATTTCAAAAAG
14991086 GATCAATTTACTTGAATTACCCCTTGAATAGAAGATTAAGCTC
129 GATCAATTTACTTGAATTACCCCTTGAATAGAAGATTAAGCTC
14991129 CATAGTTGCA
Statistics
Matches: 153, Mismatches: 16, Indels: 4
0.88 0.09 0.02
Matches are distributed among these distances:
196 27 0.18
197 99 0.65
198 27 0.18
ACGTcount: A:0.43, C:0.14, G:0.15, T:0.27
Consensus pattern (197 bp):
AACAAAAGCACAAACCAAATAAACAACAAAAACTTAAAATTCAGAAGTTTAATGCACTTCATTAG
CTTATGAATTAAGAAAAAGGGGACTTCTAATAAATTGTACCAACAGATTCACATTTCAAAAAGGA
TCAATTTACTTGAATTACCCCTTGAATAGAAGATTAAGCTCTAGAGAGAATTAATAAAATGTAGA
AC
Found at i:14994866 original size:22 final size:22
Alignment explanation
Indices: 14994822--14994866 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
14994812 TTAATCATTA
* **
14994822 TTATTCAATATCAGTCATTTAT
1 TTATTCAATAACAGTCAAATAT
*
14994844 TTATTCAGTAACAGTCAAATAT
1 TTATTCAATAACAGTCAAATAT
14994866 T
1 T
14994867 CTGTAGTAGT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.36, C:0.13, G:0.07, T:0.44
Consensus pattern (22 bp):
TTATTCAATAACAGTCAAATAT
Found at i:14995013 original size:6 final size:6
Alignment explanation
Indices: 14995004--14995035 Score: 55
Period size: 6 Copynumber: 5.3 Consensus size: 6
14994994 CACCGTAATG
*
14995004 GTAACA GTAACA GTAGCA GTAACA GTAACA GT
1 GTAACA GTAACA GTAACA GTAACA GTAACA GT
14995036 CAAGTACAGA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.44, C:0.16, G:0.22, T:0.19
Consensus pattern (6 bp):
GTAACA
Found at i:14996103 original size:21 final size:20
Alignment explanation
Indices: 14996072--14996113 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 20
14996062 CGTTTAAACA
14996072 TTCTGTTTCTTTCATTCTCTTT
1 TTCTGTTTCTTT-ATT-TCTTT
14996094 TTCT-TTTCTTTATTTCTTT
1 TTCTGTTTCTTTATTTCTTT
14996113 T
1 T
14996114 GTTTTATTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
19 6 0.30
20 3 0.15
21 7 0.35
22 4 0.20
ACGTcount: A:0.05, C:0.19, G:0.02, T:0.74
Consensus pattern (20 bp):
TTCTGTTTCTTTATTTCTTT
Found at i:14997805 original size:14 final size:15
Alignment explanation
Indices: 14997786--14997826 Score: 59
Period size: 14 Copynumber: 2.8 Consensus size: 15
14997776 TTTCAATTTT
14997786 ATTTTAATAATAA-A
1 ATTTTAATAATAATA
14997800 ATTTTAA-AATAATA
1 ATTTTAATAATAATA
14997814 ATTTTAAATAATA
1 ATTTT-AATAATA
14997827 TTCTTCACAT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
13 5 0.21
14 13 0.54
15 2 0.08
16 4 0.17
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (15 bp):
ATTTTAATAATAATA
Found at i:14997822 original size:13 final size:14
Alignment explanation
Indices: 14997786--14997826 Score: 59
Period size: 13 Copynumber: 3.0 Consensus size: 14
14997776 TTTCAATTTT
14997786 ATTTTAATAATAA-A
1 ATTTTAA-AATAATA
14997800 ATTTTAAAATAATA
1 ATTTTAAAATAATA
14997814 ATTTT-AAATAATA
1 ATTTTAAAATAATA
14997827 TTCTTCACAT
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
13 13 0.50
14 13 0.50
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (14 bp):
ATTTTAAAATAATA
Found at i:14997879 original size:15 final size:15
Alignment explanation
Indices: 14997859--14997914 Score: 51
Period size: 15 Copynumber: 3.5 Consensus size: 15
14997849 ATTCAATATT
14997859 AATATTTTAATAATA
1 AATATTTTAATAATA
*
14997874 AATATTTATTACACTTATA
1 AATA-TT-TTA-A-TAATA
*
14997893 AATATATTAATAATA
1 AATATTTTAATAATA
14997908 AAT-TTTT
1 AATATTTT
14997915 TGTAGTATAA
Statistics
Matches: 33, Mismatches: 4, Indels: 9
0.72 0.09 0.20
Matches are distributed among these distances:
14 3 0.09
15 11 0.33
16 3 0.09
17 6 0.18
18 2 0.06
19 8 0.24
ACGTcount: A:0.48, C:0.04, G:0.00, T:0.48
Consensus pattern (15 bp):
AATATTTTAATAATA
Found at i:15000408 original size:24 final size:24
Alignment explanation
Indices: 15000381--15000435 Score: 83
Period size: 24 Copynumber: 2.3 Consensus size: 24
15000371 AGTTTAAGAA
**
15000381 TCAAAATGGACCTAGTTATCTAGT
1 TCAAAATGGACCTAGTTATAAAGT
*
15000405 TCAAAATGGACCTAGTTGTAAAGT
1 TCAAAATGGACCTAGTTATAAAGT
15000429 TCAAAAT
1 TCAAAAT
15000436 AGACAAAAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.38, C:0.15, G:0.16, T:0.31
Consensus pattern (24 bp):
TCAAAATGGACCTAGTTATAAAGT
Found at i:15002572 original size:21 final size:20
Alignment explanation
Indices: 15002524--15002566 Score: 77
Period size: 20 Copynumber: 2.1 Consensus size: 20
15002514 TCTTCCGCAG
15002524 TCTACATTCAATTTTCGTTC
1 TCTACATTCAATTTTCGTTC
*
15002544 TCTACATTCAATTTTTGTTC
1 TCTACATTCAATTTTCGTTC
15002564 TCT
1 TCT
15002567 TTCATTGTCG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.19, C:0.23, G:0.05, T:0.53
Consensus pattern (20 bp):
TCTACATTCAATTTTCGTTC
Found at i:15003617 original size:11 final size:11
Alignment explanation
Indices: 15003561--15003620 Score: 52
Period size: 11 Copynumber: 5.5 Consensus size: 11
15003551 TAAATATTAG
*
15003561 TTATTAATATT
1 TTATTATTATT
*
15003572 TTAATT-TGATT
1 TT-ATTATTATT
* * *
15003583 TTTTTATGATA
1 TTATTATTATT
15003594 TT-TTATTATT
1 TTATTATTATT
15003604 TTATTATTATT
1 TTATTATTATT
15003615 TTATTA
1 TTATTA
15003621 GTATATATAA
Statistics
Matches: 40, Mismatches: 6, Indels: 6
0.77 0.12 0.12
Matches are distributed among these distances:
10 10 0.25
11 27 0.68
12 3 0.08
ACGTcount: A:0.28, C:0.00, G:0.03, T:0.68
Consensus pattern (11 bp):
TTATTATTATT
Found at i:15007319 original size:19 final size:18
Alignment explanation
Indices: 15007285--15007334 Score: 66
Period size: 18 Copynumber: 2.8 Consensus size: 18
15007275 CACTTCTTAT
15007285 TGCAAACCCATG-TATTTA
1 TGCAAACCCATGTTA-TTA
*
15007303 TGCAAACTCATGTTATTA
1 TGCAAACCCATGTTATTA
*
15007321 TGCGAACCCATGTT
1 TGCAAACCCATGTT
15007335 GTATGTTATC
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
18 26 0.93
19 2 0.07
ACGTcount: A:0.30, C:0.22, G:0.14, T:0.34
Consensus pattern (18 bp):
TGCAAACCCATGTTATTA
Found at i:15008124 original size:43 final size:43
Alignment explanation
Indices: 15008062--15008143 Score: 110
Period size: 43 Copynumber: 1.9 Consensus size: 43
15008052 TGCACTGCGC
*
15008062 ATGTGCCAGTATAGCTGCTTCTATTTATTCAATGATGCATTGT
1 ATGTGCCAATATAGCTGCTTCTATTTATTCAATGATGCATTGT
* * * * *
15008105 ATGTGTCAATATAGTTGCTTTTGTTTATTCGATGATGCA
1 ATGTGCCAATATAGCTGCTTCTATTTATTCAATGATGCA
15008144 CATTGTGTGC
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
43 33 1.00
ACGTcount: A:0.23, C:0.13, G:0.20, T:0.44
Consensus pattern (43 bp):
ATGTGCCAATATAGCTGCTTCTATTTATTCAATGATGCATTGT
Found at i:15010788 original size:46 final size:46
Alignment explanation
Indices: 15010728--15010941 Score: 218
Period size: 46 Copynumber: 4.6 Consensus size: 46
15010718 CTATATGTGT
* *
15010728 CGATGCCATGTCCCAGACATTTCTTACATTGGCTTACATCTTGAGGC
1 CGATG-CATGTCCCAGACATGTCTTACATTGGCTTACATCTCGAGGC
15010775 CGATGCATGTCCCAGACATGTCTTACATTGGCTTACATCTCGAGGC
1 CGATGCATGTCCCAGACATGTCTTACATTGGCTTACATCTCGAGGC
* * * * * * *
15010821 CGATGCATGTCCCAGACATGTCTTACACTAGCTTTCGTCTCAATGT
1 CGATGCATGTCCCAGACATGTCTTACATTGGCTTACATCTCGAGGC
** * * *
15010867 CGATGCCATGTCTTAGACATGGTCTTACACTGGCTCT-CATAAT--ATGTC
1 CGATG-CATGTCCCAGACAT-GTCTTACATTGGCT-TACAT-CTCGA-GGC
*
15010915 TGATGCATGTCCCAGACATGTCTTACA
1 CGATGCATGTCCCAGACATGTCTTACA
15010942 CTGGAACACA
Statistics
Matches: 142, Mismatches: 20, Indels: 11
0.82 0.12 0.06
Matches are distributed among these distances:
46 91 0.64
47 30 0.21
48 19 0.13
49 2 0.01
ACGTcount: A:0.22, C:0.27, G:0.19, T:0.31
Consensus pattern (46 bp):
CGATGCATGTCCCAGACATGTCTTACATTGGCTTACATCTCGAGGC
Found at i:15010945 original size:46 final size:47
Alignment explanation
Indices: 15010541--15010945 Score: 200
Period size: 46 Copynumber: 8.5 Consensus size: 47
15010531 TACCGATGTT
* * *
15010541 ATGTCCCAGACATGGTTTTACACTGG-T-TCATCCATCAAGT-CGATGCC
1 ATGTCCCAGACAT-GTCTTACACTGGCTCTCAT-AAT-ATGTCCGATGCC
** * * * * *
15010588 ATGTCCCAGACATGTTCTTACACTAACTATCGA-AATAGAGGCTGACGCC
1 ATGTCCCAGACATG-TCTTACACTGGCTCTC-ATAATA-TGTCCGATGCC
* * *
15010637 ATGTCTCAGACATAGTCTTACACTAGCTCT--TACATATCCGTGCCGATGTC
1 ATGTCCCAGACAT-GTCTTACACTGGCTCTCATA-ATAT--GT-CCGATGCC
* * * *
15010687 ATGTCCTAGACATAGTCTTACACTGACACCTC-T-ATATGTGTCGATGCC
1 ATGTCCCAGACAT-GTCTTACACTGGC-TCTCATAATATGT-CCGATGCC
* * ** *
15010735 ATGTCCCAGACATTTCTTACATTGGCT-TACATCTTGA-GGCCGATG-C
1 ATGTCCCAGACATGTCTTACACTGGCTCT-CATAAT-ATGTCCGATGCC
* * *
15010781 ATGTCCCAGACATGTCTTACATTGGCT-TACAT-CTCGA-GGCCGATG-C
1 ATGTCCCAGACATGTCTTACACTGGCTCT-CATAAT--ATGTCCGATGCC
* *
15010827 ATGTCCCAGACATGTCTTACACTAGCTTTCGTC-TCA-ATGT-CGATGCC
1 ATGTCCCAGACATGTCTTACACTGGC--TC-TCATAATATGTCCGATGCC
** *
15010874 ATGTCTTAGACATGGTCTTACACTGGCTCTCATAATATGTCTGATG-C
1 ATGTCCCAGACAT-GTCTTACACTGGCTCTCATAATATGTCCGATGCC
15010921 ATGTCCCAGACATGTCTTACACTGG
1 ATGTCCCAGACATGTCTTACACTGG
15010946 AACACAAATA
Statistics
Matches: 285, Mismatches: 43, Indels: 61
0.73 0.11 0.16
Matches are distributed among these distances:
45 4 0.01
46 91 0.32
47 68 0.24
48 49 0.17
49 35 0.12
50 35 0.12
51 2 0.01
52 1 0.00
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.31
Consensus pattern (47 bp):
ATGTCCCAGACATGTCTTACACTGGCTCTCATAATATGTCCGATGCC
Found at i:15019152 original size:21 final size:20
Alignment explanation
Indices: 15019128--15019174 Score: 58
Period size: 20 Copynumber: 2.3 Consensus size: 20
15019118 GCATCACAGA
15019128 TGCATAACAGGGGCACCAAAG
1 TGCA-AACAGGGGCACCAAAG
* * *
15019149 TGCAGACAGGGGCATCGAAG
1 TGCAAACAGGGGCACCAAAG
15019169 TGCAAA
1 TGCAAA
15019175 TTTCGTACAA
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
20 18 0.82
21 4 0.18
ACGTcount: A:0.36, C:0.21, G:0.32, T:0.11
Consensus pattern (20 bp):
TGCAAACAGGGGCACCAAAG
Found at i:15019159 original size:20 final size:20
Alignment explanation
Indices: 15019134--15019172 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
15019124 CAGATGCATA
15019134 ACAGGGGCACCAAAGTGCAG
1 ACAGGGGCACCAAAGTGCAG
* *
15019154 ACAGGGGCATCGAAGTGCA
1 ACAGGGGCACCAAAGTGCA
15019173 AATTTCGTAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.33, C:0.23, G:0.36, T:0.08
Consensus pattern (20 bp):
ACAGGGGCACCAAAGTGCAG
Found at i:15032597 original size:22 final size:22
Alignment explanation
Indices: 15032569--15032611 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
15032559 GGGGTGGACA
15032569 ATTTTGGCGA-GAAGATTAAGGG
1 ATTTTGGCGAGGAA-ATTAAGGG
*
15032591 ATTTTGGTGAGGAAATTAAGG
1 ATTTTGGCGAGGAAATTAAGG
15032612 AATGAGGAGT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 16 0.84
23 3 0.16
ACGTcount: A:0.33, C:0.02, G:0.35, T:0.30
Consensus pattern (22 bp):
ATTTTGGCGAGGAAATTAAGGG
Found at i:15043958 original size:29 final size:29
Alignment explanation
Indices: 15043925--15043998 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
15043915 GTGACGAGAT
15043925 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
15043954 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
15043983 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
15043999 AGCTCGAAGG
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.15, G:0.31, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:15044014 original size:29 final size:28
Alignment explanation
Indices: 15043982--15044056 Score: 87
Period size: 28 Copynumber: 2.6 Consensus size: 28
15043972 CTGGAAATAT
* *
15043982 ATGGCACTAAGTGTGCGAGCTCGAAGGGC
1 ATGGCACTAAGTGTGCGAGCT-AAAGCGC
** * *
15044011 ATGGCACTGTGTGTGCGGGCTAAATCGC
1 ATGGCACTAAGTGTGCGAGCTAAAGCGC
15044039 ATGGCACTAAGTGTGCGA
1 ATGGCACTAAGTGTGCGA
15044057 AATCGAGTAT
Statistics
Matches: 37, Mismatches: 9, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
28 19 0.51
29 18 0.49
ACGTcount: A:0.23, C:0.20, G:0.36, T:0.21
Consensus pattern (28 bp):
ATGGCACTAAGTGTGCGAGCTAAAGCGC
Found at i:15044025 original size:58 final size:57
Alignment explanation
Indices: 15043925--15044056 Score: 131
Period size: 58 Copynumber: 2.3 Consensus size: 57
15043915 GTGACGAGAT
* * * * * *
15043925 TGGCACTAAGTGTGCGTGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAAAT-ATA
1 TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCT--AAATCACA
* * ** * *
15043983 TGGCACTAAGTGTGCGAGCTCGAAGGGCATGGCACTGTGTGTGCGGGCTAAATCGCA
1 TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCTAAATCACA
15044040 TGGCACTAAGTGTGCGA
1 TGGCACTAAGTGTGCGA
15044057 AATCGAGTAT
Statistics
Matches: 61, Mismatches: 12, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
56 4 0.07
57 18 0.30
58 39 0.64
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.24
Consensus pattern (57 bp):
TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCTAAATCACA
Found at i:15051830 original size:29 final size:29
Alignment explanation
Indices: 15051797--15051870 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
15051787 GTGACGAGAT
15051797 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
15051826 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
15051855 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
15051871 AGCTCGAAGG
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.15, G:0.31, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:15051886 original size:29 final size:28
Alignment explanation
Indices: 15051854--15051928 Score: 87
Period size: 28 Copynumber: 2.6 Consensus size: 28
15051844 CTGGAAATAT
* *
15051854 ATGGCACTAAGTGTGCGAGCTCGAAGGGC
1 ATGGCACTAAGTGTGCGAGCT-AAAGCGC
** * *
15051883 ATGGCACTGTGTGTGCGGGCTAAATCGC
1 ATGGCACTAAGTGTGCGAGCTAAAGCGC
15051911 ATGGCACTAAGTGTGCGA
1 ATGGCACTAAGTGTGCGA
15051929 AATCGAGTAT
Statistics
Matches: 37, Mismatches: 9, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
28 19 0.51
29 18 0.49
ACGTcount: A:0.23, C:0.20, G:0.36, T:0.21
Consensus pattern (28 bp):
ATGGCACTAAGTGTGCGAGCTAAAGCGC
Found at i:15051897 original size:58 final size:57
Alignment explanation
Indices: 15051797--15051928 Score: 131
Period size: 58 Copynumber: 2.3 Consensus size: 57
15051787 GTGACGAGAT
* * * * * *
15051797 TGGCACTAAGTGTGCGTGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAAAT-ATA
1 TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCT--AAATCACA
* * ** * *
15051855 TGGCACTAAGTGTGCGAGCTCGAAGGGCATGGCACTGTGTGTGCGGGCTAAATCGCA
1 TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCTAAATCACA
15051912 TGGCACTAAGTGTGCGA
1 TGGCACTAAGTGTGCGA
15051929 AATCGAGTAT
Statistics
Matches: 61, Mismatches: 12, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
56 4 0.07
57 18 0.30
58 39 0.64
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.24
Consensus pattern (57 bp):
TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCTAAATCACA
Found at i:15056590 original size:40 final size:40
Alignment explanation
Indices: 15056545--15056674 Score: 174
Period size: 40 Copynumber: 3.2 Consensus size: 40
15056535 CGGAATACAA
15056545 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* * *
15056585 CCGGATAGAACGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
15056625 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
15056665 CCGGATATAA
1 CCGGATATAA
15056675 TTTCCAGCAT
Statistics
Matches: 78, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
39 3 0.04
40 75 0.96
ACGTcount: A:0.24, C:0.29, G:0.25, T:0.22
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:15059573 original size:24 final size:24
Alignment explanation
Indices: 15059546--15059594 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
15059536 TTATGAACTG
*
15059546 GGTTTTCCAGTCGTATTTGGATCA
1 GGTTTTCCAGTCGTATTCGGATCA
15059570 GGTTTTCCAGTCGTATTCGGATCA
1 GGTTTTCCAGTCGTATTCGGATCA
15059594 G
1 G
15059595 TTTGGCGTAG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.16, C:0.18, G:0.27, T:0.39
Consensus pattern (24 bp):
GGTTTTCCAGTCGTATTCGGATCA
Found at i:15073410 original size:13 final size:14
Alignment explanation
Indices: 15073378--15073414 Score: 58
Period size: 15 Copynumber: 2.6 Consensus size: 14
15073368 GCATTACAAT
15073378 TTATGATATATGTA
1 TTATGATATATGTA
15073392 TGTATGATATATG-A
1 T-TATGATATATGTA
15073406 TTATGATAT
1 TTATGATAT
15073415 GCTTGTGTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 8 0.36
14 3 0.14
15 11 0.50
ACGTcount: A:0.35, C:0.00, G:0.16, T:0.49
Consensus pattern (14 bp):
TTATGATATATGTA
Found at i:15073697 original size:24 final size:24
Alignment explanation
Indices: 15073653--15073698 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
15073643 TGGCATGTTG
* *
15073653 TGTTATGATTCGATATGATATGAT
1 TGTTATGATACGATATAATATGAT
15073677 TGTTATGATAC-ATTATAATATG
1 TGTTATGATACGA-TATAATATG
15073699 TTAAGATATG
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 1 0.05
24 18 0.95
ACGTcount: A:0.33, C:0.04, G:0.17, T:0.46
Consensus pattern (24 bp):
TGTTATGATACGATATAATATGAT
Found at i:15081846 original size:20 final size:20
Alignment explanation
Indices: 15081821--15081861 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
15081811 AGGAAGTGTT
15081821 TTTTGGCAG-TAATACTGCAA
1 TTTTGGCAGTTAA-ACTGCAA
*
15081841 TTTTGGCGGTTAAACTGCAA
1 TTTTGGCAGTTAAACTGCAA
15081861 T
1 T
15081862 AACTGTCTGG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 16 0.84
21 3 0.16
ACGTcount: A:0.27, C:0.15, G:0.22, T:0.37
Consensus pattern (20 bp):
TTTTGGCAGTTAAACTGCAA
Found at i:15082085 original size:24 final size:24
Alignment explanation
Indices: 15082026--15082086 Score: 61
Period size: 24 Copynumber: 2.5 Consensus size: 24
15082016 TCAGAATTTT
* * *
15082026 CATTTGTATTTGCATCTAAATCTG
1 CATTTGTATCTGAATCTAAATATG
* *
15082050 -ATTATGTGTCTGAATTTAAATATG
1 CATT-TGTATCTGAATCTAAATATG
15082074 CATTTGTATCTGA
1 CATTTGTATCTGA
15082087 TTATGAAATA
Statistics
Matches: 29, Mismatches: 6, Indels: 4
0.74 0.15 0.10
Matches are distributed among these distances:
23 3 0.10
24 23 0.79
25 3 0.10
ACGTcount: A:0.28, C:0.11, G:0.15, T:0.46
Consensus pattern (24 bp):
CATTTGTATCTGAATCTAAATATG
Found at i:15086400 original size:27 final size:28
Alignment explanation
Indices: 15086344--15086413 Score: 115
Period size: 27 Copynumber: 2.5 Consensus size: 28
15086334 AAATTTGTAC
15086344 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
15086372 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
15086399 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
15086414 GACTCACTAT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 23 0.57
28 17 0.43
ACGTcount: A:0.27, C:0.14, G:0.29, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:15086424 original size:27 final size:27
Alignment explanation
Indices: 15086344--15086425 Score: 69
Period size: 27 Copynumber: 3.0 Consensus size: 27
15086334 AAATTTGTAC
* *
15086344 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
15086372 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
*
15086399 AGCACTGAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
15086426 GCTTTTGAAT
Statistics
Matches: 48, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
26 1 0.02
27 29 0.60
28 18 0.38
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:15088550 original size:41 final size:41
Alignment explanation
Indices: 15088431--15088637 Score: 165
Period size: 41 Copynumber: 5.1 Consensus size: 41
15088421 AACTTACCTG
* * * *
15088431 ATACAATACATCGGCACAAAGACTGCTAGGCTC-AAGACCTG
1 ATACAATACATCGACACGAAGCCTGCTAGGCTCAAAG-CCTA
* * * *
15088472 ATACAACACATC-AGCATGAAACCTGCTAGGCAT-AAAGCTTA
1 ATACAATACATCGA-CACGAAGCCTGCTAGGC-TCAAAGCCTA
*
15088513 ATATAATACATCGACACGAAGCCTGCTAGGCTCAAAGCCTA
1 ATACAATACATCGACACGAAGCCTGCTAGGCTCAAAGCCTA
* * * * *
15088554 TTACGA-ACA-CTGACACGAAGCCTGTTAGGCACAAAGCCTG
1 ATACAATACATC-GACACGAAGCCTGCTAGGCTCAAAGCCTA
* * * *
15088594 ATATAATACA-CTGACACGAAGCTTACTAGGCACAAAGCCTA
1 ATACAATACATC-GACACGAAGCCTGCTAGGCTCAAAGCCTA
15088635 ATA
1 ATA
15088638 ATATGCACTG
Statistics
Matches: 133, Mismatches: 26, Indels: 14
0.77 0.15 0.08
Matches are distributed among these distances:
39 1 0.01
40 33 0.25
41 94 0.71
42 5 0.04
ACGTcount: A:0.38, C:0.26, G:0.17, T:0.19
Consensus pattern (41 bp):
ATACAATACATCGACACGAAGCCTGCTAGGCTCAAAGCCTA
Found at i:15088583 original size:40 final size:40
Alignment explanation
Indices: 15088493--15088661 Score: 175
Period size: 41 Copynumber: 4.2 Consensus size: 40
15088483 CAGCATGAAA
* *
15088493 CCTGCTAGGCATAAAGCTTAATATAATACA-TCGACACGAAG
1 CCTGCTAGGCACAAAGCCT-ATATAATACACT-GACACGAAG
*
15088534 CCTGCTAGGCTCAAAGCCTAT-TACGA-ACACTGACACGAAG
1 CCTGCTAGGCACAAAGCCTATATA--ATACACTGACACGAAG
*
15088574 CCTGTTAGGCACAAAGCCTGATATAATACACTGACACGAAG
1 CCTGCTAGGCACAAAGCCT-ATATAATACACTGACACGAAG
* * *
15088615 CTTACTAGGCACAAAGCCTA-ATAATATGCACTGGCACGAAG
1 CCTGCTAGGCACAAAGCCTATATAATA--CACTGACACGAAG
*
15088656 CTTGCT
1 CCTGCT
15088662 GGACTCAAGG
Statistics
Matches: 110, Mismatches: 10, Indels: 16
0.81 0.07 0.12
Matches are distributed among these distances:
39 8 0.07
40 33 0.30
41 67 0.61
42 2 0.02
ACGTcount: A:0.35, C:0.25, G:0.19, T:0.21
Consensus pattern (40 bp):
CCTGCTAGGCACAAAGCCTATATAATACACTGACACGAAG
Found at i:15093288 original size:19 final size:20
Alignment explanation
Indices: 15093253--15093294 Score: 52
Period size: 19 Copynumber: 2.1 Consensus size: 20
15093243 TAATCATATG
15093253 AAATAAAAATAATATTA-AT
1 AAATAAAAATAATATTACAT
*
15093272 AAATTAAAAT-ATAATTACAT
1 AAATAAAAATAAT-ATTACAT
15093292 AAA
1 AAA
15093295 ATTACTTAGT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
18 2 0.10
19 13 0.65
20 5 0.25
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (20 bp):
AAATAAAAATAATATTACAT
Found at i:15093580 original size:9 final size:9
Alignment explanation
Indices: 15093557--15093628 Score: 55
Period size: 9 Copynumber: 8.2 Consensus size: 9
15093547 ACTTAATTTT
15093557 TAAAAATT-
1 TAAAAATTA
15093565 T-AAAATTA
1 TAAAAATTA
15093573 TAAAAATTA
1 TAAAAATTA
*
15093582 TAAAAAATTTT
1 T-AAAAA-TTA
15093593 TAAAAAATTA
1 T-AAAAATTA
15093603 -AAAAA--A
1 TAAAAATTA
*
15093609 TTAAAATTA
1 TAAAAATTA
*
15093618 TAAAAAATA
1 TAAAAATTA
15093627 TA
1 TA
15093629 TTTTAAAAAA
Statistics
Matches: 52, Mismatches: 5, Indels: 13
0.74 0.07 0.19
Matches are distributed among these distances:
6 1 0.02
7 10 0.19
8 7 0.13
9 18 0.35
10 7 0.13
11 9 0.17
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (9 bp):
TAAAAATTA
Found at i:15093598 original size:36 final size:36
Alignment explanation
Indices: 15093551--15093646 Score: 120
Period size: 36 Copynumber: 2.6 Consensus size: 36
15093541 ATATTTACTT
* **
15093551 AATTTTTAAAAATTTAAAATTATAAAAATTATAAAA
1 AATTTTTAAAAAATTAAAAAAATAAAAATTATAAAA
*
15093587 AATTTTTAAAAAATTAAAAAAATTAAAATTATAAAAA
1 AATTTTTAAAAAATTAAAAAAATAAAAATTAT-AAAA
15093624 ATATATTTTAAAAAACTTAAAAA
1 A-AT-TTTTAAAAAA-TTAAAAA
15093647 GTAAATTAAA
Statistics
Matches: 52, Mismatches: 4, Indels: 4
0.87 0.07 0.07
Matches are distributed among these distances:
36 28 0.54
37 5 0.10
38 2 0.04
39 10 0.19
40 7 0.13
ACGTcount: A:0.64, C:0.01, G:0.00, T:0.35
Consensus pattern (36 bp):
AATTTTTAAAAAATTAAAAAAATAAAAATTATAAAA
Found at i:15093616 original size:15 final size:16
Alignment explanation
Indices: 15093596--15093625 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
15093586 AAATTTTTAA
15093596 AAAATTA-AAAAAATT
1 AAAATTATAAAAAATT
15093611 AAAATTATAAAAAAT
1 AAAATTATAAAAAAT
15093626 ATATTTTAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (16 bp):
AAAATTATAAAAAATT
Found at i:15094045 original size:30 final size:30
Alignment explanation
Indices: 15093988--15094045 Score: 71
Period size: 30 Copynumber: 1.9 Consensus size: 30
15093978 TATTAAAAAG
* ** *
15093988 TTTTTATTTAAATCTCTAAGTTGTTAATTT
1 TTTTTATTTAAATCACTAAACTATTAATTT
*
15094018 TTTTTATTTAAGTCACTAAACTATTAAT
1 TTTTTATTTAAATCACTAAACTATTAAT
15094046 AAATTTGGCT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.31, C:0.09, G:0.05, T:0.55
Consensus pattern (30 bp):
TTTTTATTTAAATCACTAAACTATTAATTT
Found at i:15094987 original size:7 final size:7
Alignment explanation
Indices: 15094971--15095002 Score: 57
Period size: 7 Copynumber: 4.7 Consensus size: 7
15094961 AACCTCTTCC
15094971 CAAC-AA
1 CAACAAA
15094977 CAACAAA
1 CAACAAA
15094984 CAACAAA
1 CAACAAA
15094991 CAACAAA
1 CAACAAA
15094998 CAACA
1 CAACA
15095003 TCTCTGGTTC
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 4 0.16
7 21 0.84
ACGTcount: A:0.69, C:0.31, G:0.00, T:0.00
Consensus pattern (7 bp):
CAACAAA
Found at i:15095204 original size:14 final size:14
Alignment explanation
Indices: 15095181--15095215 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
15095171 ACTTATATTC
15095181 AAAAAA-AAAAAAA
1 AAAAAAGAAAAAAA
*
15095194 AAAAAAGAAAAGAA
1 AAAAAAGAAAAAAA
15095208 AAAAAAGA
1 AAAAAAGA
15095216 TGGGACTAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
13 6 0.30
14 14 0.70
ACGTcount: A:0.91, C:0.00, G:0.09, T:0.00
Consensus pattern (14 bp):
AAAAAAGAAAAAAA
Found at i:15095888 original size:19 final size:18
Alignment explanation
Indices: 15095853--15095892 Score: 64
Period size: 17 Copynumber: 2.3 Consensus size: 18
15095843 TTATTTTTAT
15095853 TTTTAATCTCCCCTTCTC
1 TTTTAATCTCCCCTTCTC
*
15095871 TTTT-ATCTCCCCTTTTC
1 TTTTAATCTCCCCTTCTC
15095888 TTTTA
1 TTTTA
15095893 TTATTCTTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 16 0.80
18 4 0.20
ACGTcount: A:0.10, C:0.33, G:0.00, T:0.57
Consensus pattern (18 bp):
TTTTAATCTCCCCTTCTC
Found at i:15096434 original size:1 final size:1
Alignment explanation
Indices: 15096428--15096458 Score: 53
Period size: 1 Copynumber: 31.0 Consensus size: 1
15096418 TTTGAAAAGC
*
15096428 AAAAAAAAAAAAAAAAAAAAAAGAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
15096459 GAAGAAAAGA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
1 28 1.00
ACGTcount: A:0.97, C:0.00, G:0.03, T:0.00
Consensus pattern (1 bp):
A
Found at i:15096466 original size:11 final size:11
Alignment explanation
Indices: 15096429--15096480 Score: 68
Period size: 11 Copynumber: 4.5 Consensus size: 11
15096419 TTGAAAAGCA
*
15096429 AAAAAAAAAAA
1 AAAAAAAAAAG
15096440 AAAAAAAAAAG
1 AAAAAAAAAAG
15096451 AAAAAAAAGAAG
1 AAAAAAAA-AAG
15096463 AAAAGAAGAAAAG
1 AAAA-AA-AAAAG
15096476 AAAAA
1 AAAAA
15096481 CACTTGGTTC
Statistics
Matches: 37, Mismatches: 1, Indels: 5
0.86 0.02 0.12
Matches are distributed among these distances:
11 18 0.49
12 8 0.22
13 9 0.24
14 2 0.05
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (11 bp):
AAAAAAAAAAG
Found at i:15100856 original size:64 final size:64
Alignment explanation
Indices: 15100755--15100885 Score: 262
Period size: 64 Copynumber: 2.0 Consensus size: 64
15100745 CATATCTCGA
15100755 GTATAGGGACTAAATTGAATAAAATGTAAAATATGAGTACTATGTATTTGGATGTGAATTGGGT
1 GTATAGGGACTAAATTGAATAAAATGTAAAATATGAGTACTATGTATTTGGATGTGAATTGGGT
15100819 GTATAGGGACTAAATTGAATAAAATGTAAAATATGAGTACTATGTATTTGGATGTGAATTGGGT
1 GTATAGGGACTAAATTGAATAAAATGTAAAATATGAGTACTATGTATTTGGATGTGAATTGGGT
15100883 GTA
1 GTA
15100886 AACTAATGAT
Statistics
Matches: 67, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
64 67 1.00
ACGTcount: A:0.37, C:0.03, G:0.25, T:0.34
Consensus pattern (64 bp):
GTATAGGGACTAAATTGAATAAAATGTAAAATATGAGTACTATGTATTTGGATGTGAATTGGGT
Found at i:15102469 original size:21 final size:21
Alignment explanation
Indices: 15102444--15102494 Score: 84
Period size: 21 Copynumber: 2.4 Consensus size: 21
15102434 GCTCAGAGAT
15102444 AATGAAAATGGTAGTAAAGTG
1 AATGAAAATGGTAGTAAAGTG
*
15102465 AATGAAAATGGTAGTAAAGTT
1 AATGAAAATGGTAGTAAAGTG
15102486 AATGTAAAA
1 AATG-AAAA
15102495 GAACACTTAA
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
21 24 0.86
22 4 0.14
ACGTcount: A:0.51, C:0.00, G:0.24, T:0.25
Consensus pattern (21 bp):
AATGAAAATGGTAGTAAAGTG
Found at i:15115139 original size:46 final size:46
Alignment explanation
Indices: 15115086--15115261 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
15115076 TATTTGGGCA
15115086 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
15115132 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
15115179 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
15115225 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
15115262 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:15115241 original size:93 final size:93
Alignment explanation
Indices: 15115082--15115253 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
15115072 GGGATATTTG
* *
15115082 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
15115147 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
15115175 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
15115240 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
15115254 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:15118233 original size:15 final size:15
Alignment explanation
Indices: 15118213--15118281 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
15118203 GTATCTTGGG
15118213 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
15118228 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
15118243 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
15118258 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
15118273 TTTCTTTAT
1 TTTCTTTAT
15118282 TCGGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:15118282 original size:30 final size:30
Alignment explanation
Indices: 15118204--15118291 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
15118194 CATAGTATCG
* * * *
15118204 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
15118234 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
15118264 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
15118292 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 8 0.16
30 41 0.82
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:15120726 original size:46 final size:46
Alignment explanation
Indices: 15120676--15120851 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
15120666 TATTTGGGCA
15120676 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
15120722 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
15120769 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
15120815 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
15120852 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:15120831 original size:93 final size:93
Alignment explanation
Indices: 15120672--15120843 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
15120662 TGGATATTTG
* *
15120672 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
15120737 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
15120765 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
15120830 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
15120844 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:15127349 original size:2 final size:2
Alignment explanation
Indices: 15127342--15127369 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
15127332 AAATGGCATA
15127342 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
15127370 GTGTGTGTGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:15128107 original size:40 final size:40
Alignment explanation
Indices: 15127968--15128188 Score: 308
Period size: 40 Copynumber: 5.5 Consensus size: 40
15127958 TATTCGGATG
* *
15127968 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
15128008 ATAT-CGGGCTAAGTCCCGAAGGCATTTGTGCAGTAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC--TAG-TGACT
15128049 ATA-CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
**
15128088 ATATCCGGGCTAAGTCCCGAAGGCATTCATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
15128128 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
*
15128168 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
15128189 ATACTTGGGT
Statistics
Matches: 164, Mismatches: 10, Indels: 15
0.87 0.05 0.08
Matches are distributed among these distances:
38 2 0.01
39 48 0.29
40 77 0.47
41 36 0.22
42 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:15131560 original size:40 final size:41
Alignment explanation
Indices: 15131506--15131665 Score: 159
Period size: 40 Copynumber: 4.0 Consensus size: 41
15131496 ACAACCGGTA
15131506 TAACCACGT-GCACGAATGCCTTCGGGTCTTAGCCCGGATAG
1 TAACCAC-TAGCACGAATGCCTTCGGGTCTTAGCCCGGATAG
* *
15131547 -AACGACTCGCACGAATGCCTTCGGGTCTTAGCCCGGAT-G
1 TAACCACTAGCACGAATGCCTTCGGGTCTTAGCCCGGATAG
* *
15131586 TAGCCACTAGCAC-AATTGCCTTCGGGTCTTAACCCGGATA-
1 TAACCACTAGCACGAA-TGCCTTCGGGTCTTAGCCCGGATAG
*** * ** * *
15131626 TAATTTCCAGCATAAATGTCTTCGGGACTTAGCCCGGATA
1 TAACCACTAGCACGAATGCCTTCGGGTCTTAGCCCGGATA
15131666 TCATTCAATT
Statistics
Matches: 100, Mismatches: 14, Indels: 11
0.80 0.11 0.09
Matches are distributed among these distances:
39 4 0.04
40 94 0.94
41 2 0.02
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (41 bp):
TAACCACTAGCACGAATGCCTTCGGGTCTTAGCCCGGATAG
Found at i:15139649 original size:29 final size:29
Alignment explanation
Indices: 15139615--15139689 Score: 80
Period size: 29 Copynumber: 2.6 Consensus size: 29
15139605 TACTCGATTT
*
15139615 CGCACACTTAGTGCCATGCGATTTAG-GCC
1 CGCACACTTAGTGCCATGC-ACTTAGAGCC
** * * *
15139644 CGCACACACAGTGCCATGCCCTTCGAGCT
1 CGCACACTTAGTGCCATGCACTTAGAGCC
15139673 CGCACACTTAGTGCCAT
1 CGCACACTTAGTGCCAT
15139690 ATATTTCCAG
Statistics
Matches: 37, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
28 3 0.08
29 34 0.92
ACGTcount: A:0.21, C:0.36, G:0.21, T:0.21
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTAGAGCC
Found at i:15139706 original size:29 final size:29
Alignment explanation
Indices: 15139673--15139746 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
15139663 CCTTCGAGCT
15139673 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
15139702 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
15139731 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
15139747 ATCTCGTCAC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.31, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:15148730 original size:23 final size:24
Alignment explanation
Indices: 15148695--15148739 Score: 83
Period size: 23 Copynumber: 1.9 Consensus size: 24
15148685 TTTGCTCTTC
15148695 TAGCATGAACTTGTCTTACCTTTT
1 TAGCATGAACTTGTCTTACCTTTT
15148719 TAGCAT-AACTTGTCTTACCTT
1 TAGCATGAACTTGTCTTACCTT
15148740 ACCTTACCTT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
23 15 0.71
24 6 0.29
ACGTcount: A:0.22, C:0.22, G:0.11, T:0.44
Consensus pattern (24 bp):
TAGCATGAACTTGTCTTACCTTTT
Found at i:15148997 original size:55 final size:54
Alignment explanation
Indices: 15148855--15149063 Score: 205
Period size: 55 Copynumber: 3.9 Consensus size: 54
15148845 ATCCTTTTGA
* *
15148855 AACTTACCATTGCCATGTCTTGACATGGTCTTACATG-GTATCCTTGCCTTATG
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGAGTATCCTTACCTTATG
* * *
15148908 AACTCACCAATGCCATGCCTTGGCATGGTCTTACATGAG-A-CCTTTACCTTATAG
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGAGTATCC-TTACCTTAT-G
* * * *
15148962 TAACTTATCAATGCCATGTCTTGACATAGTCTTACATGA-TTTCCTTGCCTTA-G
1 -AACTTACCAATGCCATGTCTTGACATGGTCTTACATGAGTATCCTTACCTTATG
* * * *
15149015 AAACCTTACCAATTACCATGCCTTGGCATGGTCTTACATG-GAATCCTTA
1 -AA-CTTACCAA-TGCCATGTCTTGACATGGTCTTACATGAGTATCCTTA
15149064 AACCCTAATG
Statistics
Matches: 126, Mismatches: 21, Indels: 16
0.77 0.13 0.10
Matches are distributed among these distances:
52 2 0.02
53 45 0.36
54 9 0.07
55 68 0.54
56 2 0.02
ACGTcount: A:0.25, C:0.25, G:0.15, T:0.34
Consensus pattern (54 bp):
AACTTACCAATGCCATGTCTTGACATGGTCTTACATGAGTATCCTTACCTTATG
Found at i:15149007 original size:108 final size:110
Alignment explanation
Indices: 15148855--15149054 Score: 307
Period size: 108 Copynumber: 1.8 Consensus size: 110
15148845 ATCCTTTTGA
* * *
15148855 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATG-AA-CTCACCAA
1 AACTTACCAATGCCATGTCTTGACATAGTCTTACATGATATCCTTGCCTTA-GAAACCTCACCAA
*
15148918 -TGCCATGCCTTGGCATGGTCTTACATGAGACCTTTACCTTATAGT
65 TTACCATGCCTTGGCATGGTCTTACATGAGACCTTTACCTTATAGT
* * *
15148963 AACTTATCAATGCCATGTCTTGACATAGTCTTACATGATTTCCTTGCCTTAGAAACCTTACCAAT
1 AACTTACCAATGCCATGTCTTGACATAGTCTTACATGATATCCTTGCCTTAGAAACCTCACCAAT
15149028 TACCATGCCTTGGCATGGTCTTACATG
66 TACCATGCCTTGGCATGGTCTTACATG
15149055 GAATCCTTAA
Statistics
Matches: 82, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
107 1 0.01
108 48 0.59
109 7 0.09
110 26 0.32
ACGTcount: A:0.24, C:0.26, G:0.15, T:0.34
Consensus pattern (110 bp):
AACTTACCAATGCCATGTCTTGACATAGTCTTACATGATATCCTTGCCTTAGAAACCTCACCAAT
TACCATGCCTTGGCATGGTCTTACATGAGACCTTTACCTTATAGT
Found at i:15150445 original size:41 final size:40
Alignment explanation
Indices: 15150391--15150479 Score: 124
Period size: 41 Copynumber: 2.2 Consensus size: 40
15150381 ACGGGCGACC
* *
15150391 ACACGGGCGTGTCTAGACCGTGTGAAGGACACAGGCCAGGG
1 ACACGGGCATGTCTAGACAGTGTGAAGGACACAGGCCA-GG
* * *
15150432 ACGCGGGCATGTCTAGGCAGTGTGAAGGACACGGGCCAGG
1 ACACGGGCATGTCTAGACAGTGTGAAGGACACAGGCCAGG
15150472 ACACGGGC
1 ACACGGGC
15150480 GTGCGTTTGG
Statistics
Matches: 42, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
40 9 0.21
41 33 0.79
ACGTcount: A:0.24, C:0.25, G:0.40, T:0.11
Consensus pattern (40 bp):
ACACGGGCATGTCTAGACAGTGTGAAGGACACAGGCCAGG
Found at i:15152010 original size:13 final size:13
Alignment explanation
Indices: 15151992--15152016 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
15151982 ACAAACGATA
15151992 AAATTTTCACACG
1 AAATTTTCACACG
15152005 AAATTTTCACAC
1 AAATTTTCACAC
15152017 ATATACATTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.24, G:0.04, T:0.32
Consensus pattern (13 bp):
AAATTTTCACACG
Found at i:15152520 original size:48 final size:48
Alignment explanation
Indices: 15152407--15152556 Score: 192
Period size: 48 Copynumber: 3.1 Consensus size: 48
15152397 CTAGCCTATC
* * * * *
15152407 GGCATCGATATGTGATCTCATGTAAAACCATGTTTGGGACTTGGAATT
1 GGCATCGATATGTGATCCCATGTAAGACCATGTCTGGGACATGGCATT
** **
15152455 GGCATCGACCTACGATCCCATGTAAGACCATGTCTGGGACATGGCATT
1 GGCATCGATATGTGATCCCATGTAAGACCATGTCTGGGACATGGCATT
* * *
15152503 GGCATCGATATGTGATCCTATGTAAGACCATATCTGGGATATGGCATT
1 GGCATCGATATGTGATCCCATGTAAGACCATGTCTGGGACATGGCATT
15152551 GGCATC
1 GGCATC
15152557 CTACCATGTG
Statistics
Matches: 86, Mismatches: 16, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
48 86 1.00
ACGTcount: A:0.26, C:0.20, G:0.25, T:0.29
Consensus pattern (48 bp):
GGCATCGATATGTGATCCCATGTAAGACCATGTCTGGGACATGGCATT
Found at i:15155371 original size:23 final size:23
Alignment explanation
Indices: 15155345--15155444 Score: 132
Period size: 23 Copynumber: 4.4 Consensus size: 23
15155335 AAACTTTATT
15155345 GAGCTGAAACAGTAAGCTCTATC
1 GAGCTGAAACAGTAAGCTCTATC
*
15155368 GAGCTGAAAAAGTAAGCTCTATC
1 GAGCTGAAACAGTAAGCTCTATC
15155391 GAGCTG-AACAGTAAGCTC-ATAC
1 GAGCTGAAACAGTAAGCTCTAT-C
** * *
15155413 GAGCTGAAATGGTAAACTCTATT
1 GAGCTGAAACAGTAAGCTCTATC
15155436 GAGCTGAAA
1 GAGCTGAAA
15155445 ATAGAAAGCT
Statistics
Matches: 68, Mismatches: 6, Indels: 6
0.85 0.08 0.08
Matches are distributed among these distances:
21 2 0.03
22 18 0.26
23 46 0.68
24 2 0.03
ACGTcount: A:0.37, C:0.18, G:0.23, T:0.22
Consensus pattern (23 bp):
GAGCTGAAACAGTAAGCTCTATC
Found at i:15155404 original size:45 final size:45
Alignment explanation
Indices: 15155334--15155443 Score: 141
Period size: 45 Copynumber: 2.4 Consensus size: 45
15155324 TGATGAACAT
* *
15155334 TAAACTTTATTGAGCTGAAACAGTAAGCTC-TATCGAGCTGAAAAAG
1 TAAACTCTATCGAGCTG-AACAGTAAGCTCATA-CGAGCTGAAAAAG
* **
15155380 TAAGCTCTATCGAGCTGAACAGTAAGCTCATACGAGCTGAAATGG
1 TAAACTCTATCGAGCTGAACAGTAAGCTCATACGAGCTGAAAAAG
*
15155425 TAAACTCTATTGAGCTGAA
1 TAAACTCTATCGAGCTGAA
15155444 AATAGAAAGC
Statistics
Matches: 56, Mismatches: 7, Indels: 3
0.85 0.11 0.05
Matches are distributed among these distances:
45 40 0.71
46 16 0.29
ACGTcount: A:0.36, C:0.17, G:0.21, T:0.25
Consensus pattern (45 bp):
TAAACTCTATCGAGCTGAACAGTAAGCTCATACGAGCTGAAAAAG
Found at i:15166477 original size:129 final size:130
Alignment explanation
Indices: 15166240--15166497 Score: 464
Period size: 129 Copynumber: 2.0 Consensus size: 130
15166230 ACAGCCGAGT
15166240 TTATGTAACCTGGCTCTGATACCACTAAATGTAACACCCCAAACCCGGCCTAGACGTTAGGGCTG
1 TTATGTAACCTGGCTCTGATACCACTAAATGTAACACCCCAAACCCGGCCTAGACGTTAGGGCTG
* *
15166305 TATTTATGATGTCACATAGAAGTGAGTTTTGTAAAACATAGTTTTACTAAAAAAACTTGTTTGTG
66 TATCTATGATGTCACATAGAAGTGAGTTTTGTAAAACACAGTTTTACTAAAAAAACTTGTTTGTG
*
15166370 TTATGTAACCTGGCTCTGATACCACTAAATGTAACACCCCAAA-TCGGCCTAGACGTTAGGGCTG
1 TTATGTAACCTGGCTCTGATACCACTAAATGTAACACCCCAAACCCGGCCTAGACGTTAGGGCTG
* *
15166434 TATCTATGATGTCATATAGAAGTGAGTTTTGTAAAACGCAGTTTTACTAAAAAAACTTGTTTGT
66 TATCTATGATGTCACATAGAAGTGAGTTTTGTAAAACACAGTTTTACTAAAAAAACTTGTTTGT
15166498 ATTAAAACCT
Statistics
Matches: 123, Mismatches: 5, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
129 80 0.65
130 43 0.35
ACGTcount: A:0.31, C:0.18, G:0.19, T:0.32
Consensus pattern (130 bp):
TTATGTAACCTGGCTCTGATACCACTAAATGTAACACCCCAAACCCGGCCTAGACGTTAGGGCTG
TATCTATGATGTCACATAGAAGTGAGTTTTGTAAAACACAGTTTTACTAAAAAAACTTGTTTGTG
Found at i:15169186 original size:23 final size:23
Alignment explanation
Indices: 15169142--15169186 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 23
15169132 ACCCCTTAAC
* *
15169142 CAACAAAGCAAGCAAACCAAATA
1 CAACAAAACAAGCAAACAAAATA
* *
15169165 CAACAAAACACGCAAATAAAAT
1 CAACAAAACAAGCAAACAAAAT
15169187 TACTGAAGAT
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.62, C:0.24, G:0.07, T:0.07
Consensus pattern (23 bp):
CAACAAAACAAGCAAACAAAATA
Found at i:15176087 original size:49 final size:49
Alignment explanation
Indices: 15175970--15176241 Score: 454
Period size: 49 Copynumber: 5.5 Consensus size: 49
15175960 TACATATATG
* *
15175970 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTCTATGTGTATA
1 TGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA--TGTATA
*
15176021 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
1 TGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
* *
15176070 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTACGTATA
1 TGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
*
15176119 TGTGATGAGGCCTAATGGCCGATGTGATGAACGTGAAAGTGTATGTATA
1 TGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
*
15176168 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
*
15176217 TGTGATGAGGCCTAATGGCCAATGT
1 TGTGATGAGGCCTAATGGCCGATGT
15176242 AAAATATATG
Statistics
Matches: 211, Mismatches: 10, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
49 169 0.80
51 42 0.20
ACGTcount: A:0.28, C:0.10, G:0.32, T:0.30
Consensus pattern (49 bp):
TGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
Found at i:15176394 original size:37 final size:37
Alignment explanation
Indices: 15176344--15176421 Score: 147
Period size: 37 Copynumber: 2.1 Consensus size: 37
15176334 GTTCTGGGCG
*
15176344 AGACCCGATGACTACGTGTGGAGATTATGACCGGGTA
1 AGACCCGATGACTACGTGTGGAGATTATGACCAGGTA
15176381 AGACCCGATGACTACGTGTGGAGATTATGACCAGGTA
1 AGACCCGATGACTACGTGTGGAGATTATGACCAGGTA
15176418 AGAC
1 AGAC
15176422 TTCTTTTATA
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 40 1.00
ACGTcount: A:0.29, C:0.19, G:0.31, T:0.21
Consensus pattern (37 bp):
AGACCCGATGACTACGTGTGGAGATTATGACCAGGTA
Found at i:15186876 original size:37 final size:37
Alignment explanation
Indices: 15186823--15186913 Score: 155
Period size: 37 Copynumber: 2.4 Consensus size: 37
15186813 TATAAAAGAA
15186823 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
*
15186860 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
*
15186897 GTCTCACCCGGAACATA
1 GTCTTACCCGG-ACATA
15186914 TTCCAAGTTT
Statistics
Matches: 50, Mismatches: 3, Indels: 1
0.93 0.06 0.02
Matches are distributed among these distances:
37 46 0.92
38 4 0.08
ACGTcount: A:0.24, C:0.33, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
Found at i:15187064 original size:49 final size:49
Alignment explanation
Indices: 15187009--15187312 Score: 473
Period size: 49 Copynumber: 6.4 Consensus size: 49
15186999 TTTTACATTA
15187009 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
*
15187058 GCCATTAGGCCTTATCACATATACATACACTTTTACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
15187107 GCCATTAGG------C-C-T-TACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
15187147 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
* * *
15187196 GCCATTAGGCCTCATCACATATACATCCACTTTCACATTCATCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
* * *
15187245 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCATCGCATTG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
*
15187294 GCCATTCGGCCTTATCACA
1 GCCATTAGGCCTTATCACA
15187313 CACATATGTA
Statistics
Matches: 236, Mismatches: 10, Indels: 18
0.89 0.04 0.07
Matches are distributed among these distances:
40 36 0.15
41 1 0.00
42 1 0.00
43 1 0.00
46 1 0.00
47 1 0.00
48 1 0.00
49 194 0.82
ACGTcount: A:0.29, C:0.33, G:0.09, T:0.29
Consensus pattern (49 bp):
GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
Found at i:15187123 original size:89 final size:89
Alignment explanation
Indices: 15187030--15187307 Score: 421
Period size: 89 Copynumber: 3.0 Consensus size: 89
15187020 TTATCACATA
*
15187030 TACATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATCACATATACATACACTTTTACA
1 TACATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATCACATATACATACACTTTCACA
15187095 TTCACCACATCGGCCATTAGGCCT
66 TTCACCACATCGGCCATTAGGCCT
15187119 TACATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATCACATATACATACACTTTCACA
1 TACATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATCACATATACATACACTTTCACA
15187184 TTCACCACATCGGCCATTAGGCCT
66 TTCACCACATCGGCCATTAGGCCT
*
15187208 CATCACATATACATCCACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATACATAC
1 --T-AC--AT--A--CACTTTCACATTCACCACATCGGCCATTAGGCCTTATCACATATACATAC
* * * *
15187273 ACTTTCACATTCATCGCATTGGCCATTCGGCCT
57 ACTTTCACATTCACCACATCGGCCATTAGGCCT
15187306 TA
1 TA
15187308 TCACACACAT
Statistics
Matches: 174, Mismatches: 6, Indels: 12
0.91 0.03 0.06
Matches are distributed among these distances:
89 88 0.51
91 1 0.01
92 2 0.01
94 2 0.01
95 1 0.01
96 2 0.01
98 78 0.45
ACGTcount: A:0.29, C:0.33, G:0.09, T:0.29
Consensus pattern (89 bp):
TACATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATCACATATACATACACTTTCACA
TTCACCACATCGGCCATTAGGCCT
Found at i:15187257 original size:138 final size:138
Alignment explanation
Indices: 15187009--15187258 Score: 464
Period size: 138 Copynumber: 1.8 Consensus size: 138
15186999 TTTTACATTA
*
15187009 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATC
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTCATC
*
15187074 ACATATACATACACTTTTACATTCACCACATCGGCCATTAGGCCTTACATACACTTTCACATTCA
66 ACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTTACATACACTTTCACATTCA
15187139 CCACATCG
131 CCACATCG
15187147 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTCATC
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTCATC
* *
15187212 ACATATACATCCACTTTCACATTCATCACATCGGCCATTAGGCCTTA
66 ACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTTA
15187259 TCACATATAC
Statistics
Matches: 108, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
138 108 1.00
ACGTcount: A:0.29, C:0.33, G:0.09, T:0.29
Consensus pattern (138 bp):
GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTCATC
ACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTTACATACACTTTCACATTCA
CCACATCG
Found at i:15192065 original size:138 final size:138
Alignment explanation
Indices: 15191792--15192325 Score: 867
Period size: 138 Copynumber: 3.9 Consensus size: 138
15191782 ACATAGATAA
* **
15191792 AATTAATATATGAATTTGATTCATACAATATATTAATTGTATATATTTTACTGAATTTATTAATA
1 AATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCAAATTTATTAATA
* * *
15191857 -AAA-AATTATATTAATTAATTTCGGTCAAAATATAAAAGACATGGAAATTAATATTATTTCT-G
66 TAAACAGTTATATTAATTAATTTCGGTCAAAATATAAAAGACATGAAAATTAATATTCTTT-TGG
*
15191919 AAAGAATAT
130 AAATAATAT
* *
15191928 AATTAATATATGAATTTGATTCATACAAAATATTATTTGTATATATTTTACCGAATTTATTAATA
1 AATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCAAATTTATTAATA
* * *
15191993 TAAGCAGTTATATTAATTAATTTCAGTCAAAATATAAAAGACATGGAAATTAATATTCTTTTGGA
66 TAAACAGTTATATTAATTAATTTCGGTCAAAATATAAAAGACATGAAAATTAATATTCTTTTGGA
15192058 AATAATAT
131 AATAATAT
15192066 AATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCAAATTTATTAATA
1 AATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCAAATTTATTAATA
* * *
15192131 TAAATAGTTATATTAATTAATTTTGGTCAAAATATAAATGACATGAAAATTAATATTCTTTTGGA
66 TAAACAGTTATATTAATTAATTTCGGTCAAAATATAAAAGACATGAAAATTAATATTCTTTTGGA
15192196 AATAATAT
131 AATAATAT
* *
15192204 AATTAATATATGAATTTGGTTCATACAAAATATTAATTGTATATATTTTAACAAATTTATTAATA
1 AATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCAAATTTATTAATA
* *
15192269 TAAACAGTTATATTAATAAATTTCGGTCAAAATATAAAAGATATGAAAATTAATATT
66 TAAACAGTTATATTAATTAATTTCGGTCAAAATATAAAAGACATGAAAATTAATATT
15192326 GTAACACCCC
Statistics
Matches: 372, Mismatches: 23, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
136 62 0.17
137 3 0.01
138 307 0.83
ACGTcount: A:0.45, C:0.05, G:0.08, T:0.41
Consensus pattern (138 bp):
AATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCAAATTTATTAATA
TAAACAGTTATATTAATTAATTTCGGTCAAAATATAAAAGACATGAAAATTAATATTCTTTTGGA
AATAATAT
Found at i:15192096 original size:71 final size:70
Alignment explanation
Indices: 15192020--15192236 Score: 175
Period size: 71 Copynumber: 3.1 Consensus size: 70
15192010 TAATTTCAGT
*
15192020 CAAAATATAAAAGACATGGAAATTAATATTCTTTTGGAAATAATATAATTAATATATGAATTTGA
1 CAAAATATAAATGACAT-GAAATTAATATTCTTTTGGAAATAATATAATTAATATATGAATTTGA
15192085 TTCATA
65 TTCATA
* * ** * * *
15192091 CAAAATATTAATTGTATAT-ATTTTACCAAATT-TATT--AATATAA-ATAGTT-ATAT-T-AA-
1 CAAAATA-TAAATG-ACATGAAATTA--ATATTCTTTTGGAA-ATAATATAATTAATATATGAAT
* * *
15192147 TTAATT-TTGGT
61 TTGATTCAT--A
*
15192158 CAAAATATAAATGACATGAAAATTAATATTCTTTTGGAAATAATATAATTAATATATGAATTTGG
1 CAAAATATAAATGACATG-AAATTAATATTCTTTTGGAAATAATATAATTAATATATGAATTTGA
15192223 TTCATA
65 TTCATA
15192229 CAAAATAT
1 CAAAATAT
15192237 TAATTGTATA
Statistics
Matches: 106, Mismatches: 22, Indels: 36
0.65 0.13 0.22
Matches are distributed among these distances:
65 8 0.08
66 13 0.12
67 17 0.16
68 8 0.08
69 8 0.08
70 8 0.08
71 25 0.24
72 11 0.10
73 8 0.08
ACGTcount: A:0.46, C:0.06, G:0.08, T:0.40
Consensus pattern (70 bp):
CAAAATATAAATGACATGAAATTAATATTCTTTTGGAAATAATATAATTAATATATGAATTTGAT
TCATA
Found at i:15192165 original size:67 final size:66
Alignment explanation
Indices: 15192091--15192303 Score: 152
Period size: 67 Copynumber: 3.1 Consensus size: 66
15192081 TTGATTCATA
*
15192091 CAAAATATTAATTGTATATATTTTACCAAATTTATTAATATAAATAGTTATATTAATTAATTTTG
1 CAAAATATTAATTGTATATATTTTA-CAAATTTATTAATATAAATAGTTATATTAATAAATTTTG
15192156 GT
65 GT
* * ** * * * *
15192158 CAAAATA-TAAATG-ACATGAAAATTA-ATATTCTTTTGGAA-ATAATATAATTA-A-TATATGA
1 CAAAATATTAATTGTATAT--ATTTTACAAATT-TATT--AATATAA-ATAGTTATATTA-ATAA
15192217 A-TTTGGTTCAT
59 ATTTTGG----T
* *
15192228 ACAAAATATTAATTGTATATATTTTAACAAATTTATTAATATAAACAGTTATATTAATAAATTTC
1 -CAAAATATTAATTGTATATATTTT-ACAAATTTATTAATATAAATAGTTATATTAATAAATTTT
15192293 GGT
64 GGT
15192296 CAAAATAT
1 CAAAATAT
15192304 AAAAGATATG
Statistics
Matches: 108, Mismatches: 18, Indels: 40
0.65 0.11 0.24
Matches are distributed among these distances:
65 7 0.06
66 15 0.14
67 28 0.26
68 9 0.08
70 8 0.07
71 19 0.18
72 15 0.14
73 7 0.06
ACGTcount: A:0.45, C:0.06, G:0.07, T:0.42
Consensus pattern (66 bp):
CAAAATATTAATTGTATATATTTTACAAATTTATTAATATAAATAGTTATATTAATAAATTTTGG
T
Found at i:15193418 original size:2 final size:2
Alignment explanation
Indices: 15193411--15193439 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
15193401 CGTAATAAGC
15193411 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
15193440 ACATTCAACA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:15195461 original size:28 final size:28
Alignment explanation
Indices: 15195421--15195478 Score: 116
Period size: 28 Copynumber: 2.1 Consensus size: 28
15195411 TCAAGAGAGA
15195421 ATGATAAAAACATAGTTTAATTTATGTT
1 ATGATAAAAACATAGTTTAATTTATGTT
15195449 ATGATAAAAACATAGTTTAATTTATGTT
1 ATGATAAAAACATAGTTTAATTTATGTT
15195477 AT
1 AT
15195479 TATATCATAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.43, C:0.03, G:0.10, T:0.43
Consensus pattern (28 bp):
ATGATAAAAACATAGTTTAATTTATGTT
Found at i:15195533 original size:34 final size:38
Alignment explanation
Indices: 15195464--15195534 Score: 96
Period size: 34 Copynumber: 2.0 Consensus size: 38
15195454 AAAAACATAG
*
15195464 TTTAATTTATGTTATTATATCATATATATGTTTTAATA
1 TTTAATTTATCTTATTATATCATATATATGTTTTAATA
*
15195502 TTTAATTTA-CTT-TTATATCCT-TA-ATGTTTTAAT
1 TTTAATTTATCTTATTATATCATATATATGTTTTAAT
15195535 TCAAAACCCA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
34 10 0.32
35 2 0.06
36 8 0.26
37 2 0.06
38 9 0.29
ACGTcount: A:0.31, C:0.06, G:0.04, T:0.59
Consensus pattern (38 bp):
TTTAATTTATCTTATTATATCATATATATGTTTTAATA
Found at i:15197595 original size:33 final size:33
Alignment explanation
Indices: 15197557--15197625 Score: 129
Period size: 33 Copynumber: 2.1 Consensus size: 33
15197547 ACTAGCATTT
15197557 TACCATGGTAATATTTCACTTCCTTCATTTTCC
1 TACCATGGTAATATTTCACTTCCTTCATTTTCC
*
15197590 TACCATGGTAATATTTCACTTCCTTTATTTTCC
1 TACCATGGTAATATTTCACTTCCTTCATTTTCC
15197623 TAC
1 TAC
15197626 TCTTTTCTCT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.22, C:0.26, G:0.06, T:0.46
Consensus pattern (33 bp):
TACCATGGTAATATTTCACTTCCTTCATTTTCC
Found at i:15199649 original size:30 final size:29
Alignment explanation
Indices: 15199525--15199686 Score: 123
Period size: 30 Copynumber: 5.5 Consensus size: 29
15199515 TTATTGAAAA
* *
15199525 ATGAAAAGGGATAGCTTCGGCTATCGAAT
1 ATGAAAAGGGATGGCTTCGGCTATCGATT
* *
15199554 ACGAAAAGGGATAGCCTT-GGCTATCGATT
1 ATGAAAAGGGAT-GGCTTCGGCTATCGATT
* * * **
15199583 ATGAAAAGGGATGG-TGACGACCATCGAACA
1 ATGAAAAGGGATGGCT-TCGGCTATCG-ATT
*
15199613 ACGAAAAGGGATGGCTTCGGCTATCGATCT
1 ATGAAAAGGGATGGCTTCGGCTATCGAT-T
* * * *
15199643 ATGAAAAGAGA-GAACTTTGGCTATCAAATT
1 ATGAAAAGGGATG-GCTTCGGCTATC-GATT
15199673 ATGAAAAGGGATGG
1 ATGAAAAGGGATGG
15199687 TGACAAACAT
Statistics
Matches: 100, Mismatches: 24, Indels: 17
0.71 0.17 0.12
Matches are distributed among these distances:
27 1 0.01
28 1 0.01
29 40 0.40
30 54 0.54
31 4 0.04
ACGTcount: A:0.36, C:0.14, G:0.28, T:0.22
Consensus pattern (29 bp):
ATGAAAAGGGATGGCTTCGGCTATCGATT
Found at i:15199699 original size:30 final size:30
Alignment explanation
Indices: 15199665--15199744 Score: 115
Period size: 30 Copynumber: 2.7 Consensus size: 30
15199655 AACTTTGGCT
15199665 ATCAAATTATGAAAAGGGATGGTGACAAAC
1 ATCAAATTATGAAAAGGGATGGTGACAAAC
** ** *
15199695 ATCAAACAATGAAAAGGGATGGTGAGGACC
1 ATCAAATTATGAAAAGGGATGGTGACAAAC
15199725 ATCAAATTATGAAAAGGGAT
1 ATCAAATTATGAAAAGGGAT
15199745 AGCTTCAGTT
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 43 1.00
ACGTcount: A:0.46, C:0.10, G:0.25, T:0.19
Consensus pattern (30 bp):
ATCAAATTATGAAAAGGGATGGTGACAAAC
Found at i:15199703 original size:90 final size:88
Alignment explanation
Indices: 15199527--15199716 Score: 254
Period size: 90 Copynumber: 2.1 Consensus size: 88
15199517 ATTGAAAAAT
* * * * *
15199527 GAAAAGGGATAGCTTCGGCTATCGAATACGAAAAGGGATAGCCTTGGCTATCGATTATGAAAAGG
1 GAAAAGGGATGGCTTCGGCTATCGAATACGAAAAGAGAGAACCTTGGCTATCAATTATGAAAAGG
* * *
15199592 GATGGTGACGACCATCGAACAAC
66 GATGGTGACAAACATCAAACAAC
* * *
15199615 GAAAAGGGATGGCTTCGGCTATCGATCTATGAAAAGAGAGAACTTTGGCTATCAAATTATGAAAA
1 GAAAAGGGATGGCTTCGGCTATCGA-ATACGAAAAGAGAGAACCTTGGCTATC-AATTATGAAAA
*
15199680 GGGATGGTGACAAACATCAAACAAT
64 GGGATGGTGACAAACATCAAACAAC
15199705 GAAAAGGGATGG
1 GAAAAGGGATGG
15199717 TGAGGACCAT
Statistics
Matches: 88, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
88 24 0.27
89 21 0.24
90 43 0.49
ACGTcount: A:0.38, C:0.14, G:0.28, T:0.20
Consensus pattern (88 bp):
GAAAAGGGATGGCTTCGGCTATCGAATACGAAAAGAGAGAACCTTGGCTATCAATTATGAAAAGG
GATGGTGACAAACATCAAACAAC
Found at i:15199736 original size:90 final size:89
Alignment explanation
Indices: 15199570--15199740 Score: 220
Period size: 90 Copynumber: 1.9 Consensus size: 89
15199560 AGGGATAGCC
* * * * ** *
15199570 TTGGCTATCGATTATGAAAAGGGATGGTGACGACCATCGAACAACGAAAAGGGATGGCTTCGGCT
1 TTGGCTATCAATTATGAAAAGGGATGGTGACAAACATCAAACAACGAAAAGGGATGGCTGAGGCC
*
15199635 ATCGATCTATGAAAAGAGAGAACT
66 ATCAATCTATGAAAAGAGAGAACT
*
15199659 TTGGCTATCAAATTATGAAAAGGGATGGTGACAAACATCAAACAATGAAAAGGGATGG-TGAGGA
1 TTGGCTATC-AATTATGAAAAGGGATGGTGACAAACATCAAACAACGAAAAGGGATGGCTGAGG-
15199723 CCATCAAAT-TATGAAAAG
64 CCATC-AATCTATGAAAAG
15199741 GGATAGCTTC
Statistics
Matches: 70, Mismatches: 9, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
89 12 0.17
90 56 0.80
91 2 0.03
ACGTcount: A:0.39, C:0.13, G:0.26, T:0.21
Consensus pattern (89 bp):
TTGGCTATCAATTATGAAAAGGGATGGTGACAAACATCAAACAACGAAAAGGGATGGCTGAGGCC
ATCAATCTATGAAAAGAGAGAACT
Found at i:15199766 original size:30 final size:30
Alignment explanation
Indices: 15199732--15199799 Score: 91
Period size: 30 Copynumber: 2.3 Consensus size: 30
15199722 ACCATCAAAT
*
15199732 TATGAAAAGGGATAGCTTCAGTTGTCGAAC
1 TATGAAAAGGGATAACTTCAGTTGTCGAAC
* * * *
15199762 TATGAAATGGGGTAACTTCGGTTGTCGAAT
1 TATGAAAAGGGATAACTTCAGTTGTCGAAC
15199792 TATGAAAA
1 TATGAAAA
15199800 AGGTGTGTCA
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.34, C:0.10, G:0.26, T:0.29
Consensus pattern (30 bp):
TATGAAAAGGGATAACTTCAGTTGTCGAAC
Found at i:15203584 original size:21 final size:20
Alignment explanation
Indices: 15203560--15203601 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
15203550 AGATTGTGCC
15203560 TTGACACAGAAAAAAGAAAAA
1 TTGA-ACAGAAAAAAGAAAAA
* *
15203581 TTGAGCAGGAAAAAGAAAAA
1 TTGAACAGAAAAAAGAAAAA
15203601 T
1 T
15203602 AATAGACAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 15 0.79
21 4 0.21
ACGTcount: A:0.62, C:0.07, G:0.19, T:0.12
Consensus pattern (20 bp):
TTGAACAGAAAAAAGAAAAA
Found at i:15203734 original size:13 final size:13
Alignment explanation
Indices: 15203716--15203740 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
15203706 TAAACTGAAT
15203716 AAAGAAATTAAAC
1 AAAGAAATTAAAC
15203729 AAAGAAATTAAA
1 AAAGAAATTAAA
15203741 AGAAAAGTAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.72, C:0.04, G:0.08, T:0.16
Consensus pattern (13 bp):
AAAGAAATTAAAC
Found at i:15207813 original size:56 final size:56
Alignment explanation
Indices: 15207720--15207830 Score: 143
Period size: 56 Copynumber: 2.0 Consensus size: 56
15207710 GTTGTGTACC
* * * *
15207720 ACTGTAACACCCATTATCCATATTCAATGTCGGAACA-GACTACGAGGCATTACTGA
1 ACTGTAACACCCATTACCCATATTCAACGCCGAAACAGGA-TACGAGGCATTACTGA
* * *
15207776 ACTGTAACACCCCTTGCCCGTATTCAACGCCGAAACAGGATACGAGGCATTACTG
1 ACTGTAACACCCATTACCCATATTCAACGCCGAAACAGGATACGAGGCATTACTG
15207831 GACTTACATC
Statistics
Matches: 47, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
56 45 0.96
57 2 0.04
ACGTcount: A:0.32, C:0.28, G:0.18, T:0.23
Consensus pattern (56 bp):
ACTGTAACACCCATTACCCATATTCAACGCCGAAACAGGATACGAGGCATTACTGA
Found at i:15216962 original size:40 final size:40
Alignment explanation
Indices: 15216917--15217080 Score: 168
Period size: 40 Copynumber: 4.1 Consensus size: 40
15216907 CGGAATATAA
15216917 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
15216957 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
15216997 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * * *
15217037 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
15217077 CCGG
1 CCGG
15217081 TATCATTCAA
Statistics
Matches: 101, Mismatches: 22, Indels: 2
0.81 0.18 0.02
Matches are distributed among these distances:
39 1 0.01
40 100 0.99
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:15224586 original size:46 final size:46
Alignment explanation
Indices: 15224532--15224707 Score: 173
Period size: 46 Copynumber: 3.8 Consensus size: 46
15224522 TGGTTGAGCA
*
15224532 TCCGAACTCGTTAAGTTGAGTCCGAGTTCACTTATGGATGTGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATG
* * *
15224578 TCCAAACTCGTTGAGTTGAGTCCGAGTT--C-GA-GAGATAT-AACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATG-GATGTGAA-T--G
* * * *
15224623 CATCTGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATG
* *
15224671 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
15224708 GCGGGTTACA
Statistics
Matches: 106, Mismatches: 13, Indels: 22
0.75 0.09 0.16
Matches are distributed among these distances:
42 3 0.03
43 6 0.06
44 1 0.01
45 1 0.01
46 61 0.58
47 25 0.24
48 1 0.01
49 1 0.01
50 4 0.04
51 3 0.03
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATG
Found at i:15224688 original size:93 final size:93
Alignment explanation
Indices: 15224529--15224699 Score: 270
Period size: 93 Copynumber: 1.8 Consensus size: 93
15224519 GGATGGTTGA
* * *
15224529 GCATCCGAACTCGTTAAGTTGAGTCCGAGTTCACTTATGGATGTGAATGTCCAAACTCGTTGAGT
1 GCATCCGAACTCGTTAAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCAAACTCGTTGAGT
15224594 TGAGTCCGAGTTCGAGAGATATAACTAG
66 TGAGTCCGAGTTCGAGAGATATAACTAG
* * * * *
15224622 GCATCTGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTAAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCAAACTCGTTGAGT
15224687 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
15224700 ACTTATGGGC
Statistics
Matches: 70, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTAAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCAAACTCGTTGAGT
TGAGTCCGAGTTCGAGAGATATAACTAG
Found at i:15244071 original size:19 final size:19
Alignment explanation
Indices: 15244047--15244084 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
15244037 CTTTGTGATG
15244047 TTAGTTTATGAATTATGAA
1 TTAGTTTATGAATTATGAA
15244066 TTAGTTTATGAATTATGAA
1 TTAGTTTATGAATTATGAA
15244085 AGATATGTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.37, C:0.00, G:0.16, T:0.47
Consensus pattern (19 bp):
TTAGTTTATGAATTATGAA
Found at i:15244820 original size:56 final size:56
Alignment explanation
Indices: 15244732--15244919 Score: 288
Period size: 56 Copynumber: 3.4 Consensus size: 56
15244722 ATGGCATGGA
* * *
15244732 TATATGTGT-TGAGTAATACCACGTTTAATACGTTGGCATCGATATGTGATTCCAT
1 TATATGTGTGCGAGTAAGACCACATTTAATACGTTGGCATCGATATGTGATTCCAT
* * *
15244787 TATATGTGTGCGAGTAAGACCACATTTAGTACGTTGGCATCGATATGTGATTTCGT
1 TATATGTGTGCGAGTAAGACCACATTTAATACGTTGGCATCGATATGTGATTCCAT
* * *
15244843 TATATATGTGTGAGTAAGACCACATTTAATACGTTGGCATCGATATGTGATTCAAT
1 TATATGTGTGCGAGTAAGACCACATTTAATACGTTGGCATCGATATGTGATTCCAT
15244899 TATATGTGTGCGAGTAAGACC
1 TATATGTGTGCGAGTAAGACC
15244920 CTATCTGGGA
Statistics
Matches: 118, Mismatches: 14, Indels: 1
0.89 0.11 0.01
Matches are distributed among these distances:
55 9 0.08
56 109 0.92
ACGTcount: A:0.28, C:0.14, G:0.22, T:0.36
Consensus pattern (56 bp):
TATATGTGTGCGAGTAAGACCACATTTAATACGTTGGCATCGATATGTGATTCCAT
Found at i:15244938 original size:112 final size:113
Alignment explanation
Indices: 15244731--15244950 Score: 331
Period size: 112 Copynumber: 2.0 Consensus size: 113
15244721 CATGGCATGG
* * *
15244731 ATATATGTGTTGAGTAATACCACGTTTAATACGTTGGCATCGATATGTGATTCCATTATATGTGT
1 ATATATGTGTTGAGTAAGACCACATTTAATACGTTGGCATCGATATGTGATTCAATTATATGTGT
* *
15244796 GCGAGTAAGACCACATTTAGTACGTTGGCATCGATATGTGATTTCGTT
66 GCGAGTAAGACCACATTGAGTACGTTGGCATCGATATATGATTTCGTT
15244844 ATATATGTG-TGAGTAAGACCACATTTAATACGTTGGCATCGATATGTGATTCAATTATATGTGT
1 ATATATGTGTTGAGTAAGACCACATTTAATACGTTGGCATCGATATGTGATTCAATTATATGTGT
*
15244908 GCGAGTAAGACC-CTATCTGGGATA-G-TGGCATCGATATATGATT
66 GCGAGTAAGACCAC-AT-TGAG-TACGTTGGCATCGATATATGATT
15244951 ACATGTAAGA
Statistics
Matches: 98, Mismatches: 6, Indels: 7
0.88 0.05 0.06
Matches are distributed among these distances:
111 1 0.01
112 83 0.85
113 12 0.12
114 2 0.02
ACGTcount: A:0.28, C:0.14, G:0.23, T:0.35
Consensus pattern (113 bp):
ATATATGTGTTGAGTAAGACCACATTTAATACGTTGGCATCGATATGTGATTCAATTATATGTGT
GCGAGTAAGACCACATTGAGTACGTTGGCATCGATATATGATTTCGTT
Found at i:15249454 original size:2 final size:2
Alignment explanation
Indices: 15249447--15249479 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
15249437 TTACTTTATT
15249447 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
15249480 GTAAGGAAAG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:15251601 original size:46 final size:46
Alignment explanation
Indices: 15251549--15251771 Score: 358
Period size: 46 Copynumber: 4.8 Consensus size: 46
15251539 GCTCTTTGAA
*
15251549 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGCCTGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGAT
15251595 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGAT
*
15251641 ATGAAATGTGTAAGACCATGGTTGAAAGACACCATGGCAACCTGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGAT
* *
15251687 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGAT
* * * *
15251733 A-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 ATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
15251772 TCATGTCAAA
Statistics
Matches: 167, Mismatches: 9, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
45 1 0.01
46 166 0.99
ACGTcount: A:0.39, C:0.15, G:0.24, T:0.22
Consensus pattern (46 bp):
ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGAT
Found at i:15257194 original size:427 final size:422
Alignment explanation
Indices: 15256189--15257049 Score: 1175
Period size: 427 Copynumber: 2.0 Consensus size: 422
15256179 TCAATTTCTT
* * *
15256189 CAAAACCCAAGCCTAGCAGAACCATTTTCATACTTATACCAGCCCATATTTTCCACTTAATTACA
1 CAAAA-CCAAGCCTAGCAGAACCA-TTTCAAAATTATA-CAGCCCATATTTTCCACTTAATCACA
* * **** ** * * * * *
15256254 CTTTTTCTACTTTTTTTATAACTTTTACAAATAAGTCCTTTTTGACATTTTATCAAAAATCACTT
63 CTATTAC-AAAAATGGTATAA--TTTACAAATAAGACCTTTTTAAAATTTTACCGAAAATCACTT
* *
15256319 AGCTACAACTAACATACATTTTCTACCATTAGACATCAAAATACACAAATATCTAACATGGGTAA
125 AGCTACAACGAACATACATTTTCTACCATTAGACATCAAAATACACAAACATCTAACATGGGTAA
*
15256384 AATTTTAAACTTCATATTTCTTTCAAATTAGTCCTTGAAATAGGTAGATTAGTTTACAAGGATCT
190 AATTTTAAACTTCATATTTCTTTCAAATTAGTCCTTGAAATAGCTAGATTAGTTTACAAGGATCT
* * * * *
15256449 CAAAAACATGAAAATCATTAAAAACTAGGCTAGAACAGACTTACAATTGAGCTTGAAAGCTTGAC
255 CAAAAACATGAAAATCATTAAAAACGAGGCTAAAACAAACTTAAAATCGAGCTTGAAAGCTTGAC
* *
15256514 AAACCCTAGCTATGTCTTATTCTTATAAATTTCGGCTAGGGGGACTAAATTGATGATGATAATGA
320 AAACCCTAGCTATGTCTTATTCTTATAAATTTCGGCAAGGGGGACTAAATTGATGATGATAAAGA
* * *
15256579 CTTTTATTTAGTTATTTTGGCTTTATTTGACAAGTGAC
385 CTTTTATTTAGTTATTTTGGCTTTATTTAACAAATAAC
* *
15256617 CAAAACCCAAGCCTAGCAGAACCATTTTCATACTTATACCAGCCCATATTTTCCACTTAATCACA
1 CAAAA-CCAAGCCTAGCAGAACCA-TTTCAAAATTATA-CAGCCCATATTTTCCACTTAATCACA
* * *** ** * * *
15256682 CTTTTACTACTTTTTTATAACTTTTACAAATAAGTCCTTTTTGACATTTTACCGAAAATCACTTA
63 CTATTACAAAAATGGTATAA--TTTACAAATAAGACCTTTTTAAAATTTTACCGAAAATCACTTA
*
15256747 GCTACAACTAACATACATTTTCTACCATTAGACATCAAAATACACAAACATCTAACATGGGTAAA
126 GCTACAACGAACATACATTTTCTACCATTAGACATCAAAATACACAAACATCTAACATGGGTAAA
* *
15256812 ATTTTAAACTTCATCTTTCTTTCAAATTAGTCCTTGAAATAGCTAGATTAGTTTACAAGGATTTC
191 ATTTTAAACTTCATATTTCTTTCAAATTAGTCCTTGAAATAGCTAGATTAGTTTACAAGGATCTC
*
15256877 AAAAACATGAAAATCATTAAAAACGAGGCTAAAACAAACTTAAAATCGAGCTTGGAAGCTTGGA-
256 AAAAACATGAAAATCATTAAAAACGAGGCTAAAACAAACTTAAAATCGAGCTTGAAAGCTT-GAC
* *
15256941 AAACCCTAGCTATGTCTTATTCTTGTAAATTTCGGCCAAGGGGGACTAAATTGATGGTGATAAAG
320 AAACCCTAGCTATGTCTTATTCTTATAAATTTCGG-CAAGGGGGACTAAATTGATGATGATAAAG
15257006 ACTTTTATTTAGTTATTTTGGCTTTATTTAACAAATAAC
384 ACTTTTATTTAGTTATTTTGGCTTTATTTAACAAATAAC
15257045 CAAAA
1 CAAAA
15257050 TGTGCTTCAT
Statistics
Matches: 407, Mismatches: 24, Indels: 4
0.94 0.06 0.01
Matches are distributed among these distances:
427 268 0.66
428 139 0.34
ACGTcount: A:0.36, C:0.18, G:0.11, T:0.34
Consensus pattern (422 bp):
CAAAACCAAGCCTAGCAGAACCATTTCAAAATTATACAGCCCATATTTTCCACTTAATCACACTA
TTACAAAAATGGTATAATTTACAAATAAGACCTTTTTAAAATTTTACCGAAAATCACTTAGCTAC
AACGAACATACATTTTCTACCATTAGACATCAAAATACACAAACATCTAACATGGGTAAAATTTT
AAACTTCATATTTCTTTCAAATTAGTCCTTGAAATAGCTAGATTAGTTTACAAGGATCTCAAAAA
CATGAAAATCATTAAAAACGAGGCTAAAACAAACTTAAAATCGAGCTTGAAAGCTTGACAAACCC
TAGCTATGTCTTATTCTTATAAATTTCGGCAAGGGGGACTAAATTGATGATGATAAAGACTTTTA
TTTAGTTATTTTGGCTTTATTTAACAAATAAC
Found at i:15259576 original size:39 final size:40
Alignment explanation
Indices: 15259483--15259591 Score: 139
Period size: 39 Copynumber: 2.8 Consensus size: 40
15259473 TTCACAATTT
* *
15259483 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAGTCACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
* * *
15259523 GCACAATTGCCTTC-GGTCTTAACCCGGATGTAATTACCA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
* * *
15259562 GCATAAATGTCTTCGGGACTTAGCCCGGAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT
15259592 ATCATTCAAT
Statistics
Matches: 58, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
39 32 0.55
40 26 0.45
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.27
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
Found at i:15263861 original size:27 final size:25
Alignment explanation
Indices: 15263831--15263899 Score: 75
Period size: 25 Copynumber: 2.7 Consensus size: 25
15263821 CGTTCCAACC
**
15263831 CACAGCTCGTGTGAGCAGGCCCATTTT
1 CACAGCTCGTGTGAGCAGAACCA--TT
* * *
15263858 CACAGCTCATGTGAGCATAACGATT
1 CACAGCTCGTGTGAGCAGAACCATT
15263883 CACAGCTCGTGTGAGCA
1 CACAGCTCGTGTGAGCA
15263900 TACATGTACA
Statistics
Matches: 36, Mismatches: 6, Indels: 2
0.82 0.14 0.05
Matches are distributed among these distances:
25 18 0.50
27 18 0.50
ACGTcount: A:0.25, C:0.28, G:0.25, T:0.23
Consensus pattern (25 bp):
CACAGCTCGTGTGAGCAGAACCATT
Found at i:15267478 original size:41 final size:40
Alignment explanation
Indices: 15267308--15267485 Score: 231
Period size: 40 Copynumber: 4.5 Consensus size: 40
15267298 AAGCCAAGTA
* * *
15267308 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTC-AATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
15267346 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
15267386 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
15267426 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCA-AAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACT--CGCACAAATG
15267467 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
15267486 TTATCATCCA
Statistics
Matches: 127, Mismatches: 7, Indels: 9
0.89 0.05 0.06
Matches are distributed among these distances:
38 12 0.09
39 18 0.14
40 69 0.54
41 24 0.19
42 4 0.03
ACGTcount: A:0.25, C:0.29, G:0.24, T:0.22
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:15269745 original size:31 final size:31
Alignment explanation
Indices: 15269710--15269773 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
15269700 ACTTTTCATA
15269710 TTTCATAATTCATAACACTGGGCCGAAGCCT
1 TTTCATAATTCATAACACTGGGCCGAAGCCT
* **
15269741 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATAATTCATAACACTGGGCCGAAGCCT
15269772 TT
1 TT
15269774 ACGGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.36
Consensus pattern (31 bp):
TTTCATAATTCATAACACTGGGCCGAAGCCT
Found at i:15270019 original size:24 final size:24
Alignment explanation
Indices: 15269967--15270131 Score: 230
Period size: 23 Copynumber: 7.0 Consensus size: 24
15269957 GCTTTATCAT
*
15269967 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
15269992 ATAACTGGGGCAAAAGCCCTTTTT
1 ATAACTGGGGCATAAGCCCTTTTA
*
15270016 ATAACTGGGGCGTAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
* *
15270039 ATAACTGGGGCGTAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
15270063 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
15270086 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
15270109 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
15270132 TCACTTCCTC
Statistics
Matches: 128, Mismatches: 9, Indels: 7
0.89 0.06 0.05
Matches are distributed among these distances:
23 67 0.52
24 49 0.38
25 12 0.09
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.28
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:15270043 original size:47 final size:47
Alignment explanation
Indices: 15269966--15270130 Score: 235
Period size: 47 Copynumber: 3.5 Consensus size: 47
15269956 TGCTTTATCA
* *
15269966 TATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTT
1 TATAACTGG-GGCATAAGCC-C-TTTAATAACTGGGGCATAAGCCCTTTT
* *
15270015 TATAACTGGGGCGTAAGCCCTTTAATAACTGGGGCGTAAGCCCTTTT
1 TATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCCCTTTT
*
15270062 GATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCCC-TTT
1 TATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCCCTTTT
*
15270108 AATAACTGGGGCATAAGCCCTTT
1 TATAACTGGGGCATAAGCCCTTT
15270131 TTCACTTCCT
Statistics
Matches: 108, Mismatches: 7, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
46 25 0.23
47 65 0.60
48 5 0.05
49 13 0.12
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.28
Consensus pattern (47 bp):
TATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCCCTTTT
Found at i:15270209 original size:20 final size:20
Alignment explanation
Indices: 15270186--15270288 Score: 188
Period size: 20 Copynumber: 5.2 Consensus size: 20
15270176 GAACATCTCG
15270186 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
*
15270206 TGTGCATATCATACATGTCA
1 TGTGCATATCATACATATCA
*
15270226 TGTGTATATCATACATATCA
1 TGTGCATATCATACATATCA
15270246 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
15270266 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
15270286 TGT
1 TGT
15270289 TTATCAAAAT
Statistics
Matches: 79, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 79 1.00
ACGTcount: A:0.33, C:0.18, G:0.12, T:0.37
Consensus pattern (20 bp):
TGTGCATATCATACATATCA
Done.