Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr02 99090824
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 99090824
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 317 characters in sequence are not A, C, G, or T
File 56 of 318
Found at i:15916919 original size:42 final size:42
Alignment explanation
Indices: 15916811--15916926 Score: 135
Period size: 43 Copynumber: 2.7 Consensus size: 42
15916801 GGCTATTACA
* *
15916811 CCATATCCCAGATATGGTCTTACATGGGAT-CTCATATCAATG
1 CCATATCCCAGATATGGTCTTACA-CGAATCCTCATATCAATG
* * **
15916853 CCAATAGCCCAGCTATGGTCTTACACGAATCCTCATATTGATG
1 CC-ATATCCCAGATATGGTCTTACACGAATCCTCATATCAATG
*
15916896 TCATATCCCAGATATGGTCTTACACGTAATC
1 CCATATCCCAGATATGGTCTTACACG-AATC
15916927 TCAAATAACC
Statistics
Matches: 62, Mismatches: 9, Indels: 5
0.82 0.12 0.07
Matches are distributed among these distances:
42 27 0.44
43 35 0.56
ACGTcount: A:0.28, C:0.26, G:0.16, T:0.30
Consensus pattern (42 bp):
CCATATCCCAGATATGGTCTTACACGAATCCTCATATCAATG
Found at i:15920489 original size:42 final size:42
Alignment explanation
Indices: 15920375--15920489 Score: 96
Period size: 44 Copynumber: 2.7 Consensus size: 42
15920365 TGTGTTATTG
15920375 TGTAAGACCAC-GTCTGGGAC-GTTGGCATCGACTTCTATTTTACA
1 TGTAAGACC-CTGTCTGGGACAG-TGGCATCGAC-TCTATTTTA-A
* * * *
15920419 TGTAAGACCATGTCTAGCACA-TCAGCATCGTA-TCTGATTTT-A
1 TGTAAGACCCTGTCTGGGACAGT-GGCATCG-ACTCT-ATTTTAA
15920461 TGTAAGACCCTGTCTGGGACAGTGGCATC
1 TGTAAGACCCTGTCTGGGACAGTGGCATC
15920490 CATGTTTCAT
Statistics
Matches: 57, Mismatches: 8, Indels: 14
0.72 0.10 0.18
Matches are distributed among these distances:
42 24 0.42
43 5 0.09
44 27 0.47
45 1 0.02
ACGTcount: A:0.24, C:0.23, G:0.23, T:0.30
Consensus pattern (42 bp):
TGTAAGACCCTGTCTGGGACAGTGGCATCGACTCTATTTTAA
Found at i:15924424 original size:23 final size:23
Alignment explanation
Indices: 15924370--15924488 Score: 161
Period size: 23 Copynumber: 5.1 Consensus size: 23
15924360 CCTAACCTCT
*
15924370 TTTAATAACTGGGGCA-AAGCCC
1 TTTAATAACTAGGGCATAAGCCC
**
15924392 TTTTTAATAACT-GGTTAATAAGCCC
1 --TTTAATAACTAGG-GCATAAGCCC
15924417 TTTAATAACTAGGGCATAAGCCC
1 TTTAATAACTAGGGCATAAGCCC
15924440 TTTAATAACTAGGGCATAAGCCC
1 TTTAATAACTAGGGCATAAGCCC
*
15924463 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTAGGGCATAAGCCC
15924486 TTT
1 TTT
15924489 TGCACTTCCT
Statistics
Matches: 87, Mismatches: 5, Indels: 7
0.88 0.05 0.07
Matches are distributed among these distances:
23 68 0.78
24 13 0.15
25 6 0.07
ACGTcount: A:0.32, C:0.20, G:0.18, T:0.30
Consensus pattern (23 bp):
TTTAATAACTAGGGCATAAGCCC
Found at i:15924561 original size:9 final size:9
Alignment explanation
Indices: 15924547--15924623 Score: 55
Period size: 9 Copynumber: 7.9 Consensus size: 9
15924537 ATCTCGTGTG
15924547 CATATCATA
1 CATATCATA
*
15924556 CATATCATGTG
1 CATATCA--TA
15924567 CATATCATA
1 CATATCATA
* * *
15924576 CGTGTCATGTG
1 CATATCA--TA
15924587 CATATCATA
1 CATATCATA
*
15924596 CATATCATGTG
1 CATATCA--TA
15924607 CATATCATA
1 CATATCATA
15924616 CATATCAT
1 CATATCAT
15924624 GTTTATCAAA
Statistics
Matches: 52, Mismatches: 10, Indels: 12
0.70 0.14 0.16
Matches are distributed among these distances:
9 30 0.58
11 22 0.42
ACGTcount: A:0.34, C:0.21, G:0.10, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:15924566 original size:20 final size:20
Alignment explanation
Indices: 15924543--15924625 Score: 148
Period size: 20 Copynumber: 4.2 Consensus size: 20
15924533 GAACATCTCG
15924543 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
* *
15924563 TGTGCATATCATACGTGTCA
1 TGTGCATATCATACATATCA
15924583 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
15924603 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
15924623 TGT
1 TGT
15924626 TTATCAAAAT
Statistics
Matches: 59, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 59 1.00
ACGTcount: A:0.31, C:0.19, G:0.13, T:0.36
Consensus pattern (20 bp):
TGTGCATATCATACATATCA
Found at i:15924572 original size:11 final size:11
Alignment explanation
Indices: 15924543--15924614 Score: 57
Period size: 11 Copynumber: 7.1 Consensus size: 11
15924533 GAACATCTCG
15924543 TGTGCATATCA
1 TGTGCATATCA
*
15924554 --TACATATCA
1 TGTGCATATCA
15924563 TGTGCATATCA
1 TGTGCATATCA
* * *
15924574 --TACGTGTCA
1 TGTGCATATCA
15924583 TGTGCATATCA
1 TGTGCATATCA
*
15924594 --TACATATCA
1 TGTGCATATCA
15924603 TGTGCATATCA
1 TGTGCATATCA
15924614 T
1 T
15924615 ACATATCATG
Statistics
Matches: 45, Mismatches: 10, Indels: 12
0.67 0.15 0.18
Matches are distributed among these distances:
9 22 0.49
11 23 0.51
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.36
Consensus pattern (11 bp):
TGTGCATATCA
Found at i:15924708 original size:25 final size:25
Alignment explanation
Indices: 15924662--15924709 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
15924652 ATGTATAAAC
* * *
15924662 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
*
15924687 CCTAGGGGCAAAACGGTTATTTT
1 CCTAGGGGCAAAACGGTCATTTT
15924710 CATATTATAA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.25, C:0.15, G:0.25, T:0.35
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:15925914 original size:27 final size:27
Alignment explanation
Indices: 15925883--15925957 Score: 87
Period size: 27 Copynumber: 2.8 Consensus size: 27
15925873 TTTTACCATA
* *
15925883 CAAGGGTATTTTGGTAGTTTTACAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAC
* ** *
15925910 TAAGGGTATTGCGGTAATTTCACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAC
*
15925937 CAAGGGTATTTTAGTAATTTT
1 CAAGGGTATTTTGGTAATTTT
15925958 GTAAATCGAG
Statistics
Matches: 37, Mismatches: 11, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
27 37 1.00
ACGTcount: A:0.31, C:0.09, G:0.21, T:0.39
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTACAAAC
Found at i:15926025 original size:81 final size:81
Alignment explanation
Indices: 15925950--15926152 Score: 291
Period size: 81 Copynumber: 2.5 Consensus size: 81
15925940 GGGTATTTTA
* * * * * *
15925950 GTAATTTTGTAAATCGAGGGTAAAACAGCAATTCTGTAAATCAAGGGTGAAAC-AGTAATTCTAT
1 GTAATTATGTAAATTGAGGGTAAAACGGTAATTCTGTAAATCAAGGGTAAAACGA-TAATTATAT
15926014 AAATCGAGGGTAAAATG
65 AAATCGAGGGTAAAATG
* *
15926031 GTAATTCTGTAAATTGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGATAATTATATA
1 GTAATTATGTAAATTGAGGGTAAAACGGTAATTCTGTAAATCAAGGGTAAAACGATAATTATATA
*
15926096 AATCGGGGGTAAAATG
66 AATCGAGGGTAAAATG
* *
15926112 GTAATTATGTAAATTGGGGGTAAAACGGTAATTATGTAAAT
1 GTAATTATGTAAATTGAGGGTAAAACGGTAATTCTGTAAAT
15926153 TGCAAGAGCC
Statistics
Matches: 110, Mismatches: 11, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
81 109 0.99
82 1 0.01
ACGTcount: A:0.40, C:0.07, G:0.24, T:0.29
Consensus pattern (81 bp):
GTAATTATGTAAATTGAGGGTAAAACGGTAATTCTGTAAATCAAGGGTAAAACGATAATTATATA
AATCGAGGGTAAAATG
Found at i:15926154 original size:27 final size:27
Alignment explanation
Indices: 15925950--15926152 Score: 244
Period size: 27 Copynumber: 7.5 Consensus size: 27
15925940 GGGTATTTTA
* *
15925950 GTAATTTTGTAAATCGAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACG
* * * *
15925977 GCAATTCTGTAAATCAAGGGTGAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
15926004 GTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
15926031 GTAATTCTGTAAATTGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
15926058 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* * * * *
15926085 ATAATTATATAAATCGGGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* * *
15926112 GTAATTATGTAAATTGGGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
15926139 GTAATTATGTAAAT
1 GTAATTCTGTAAAT
15926153 TGCAAGAGCC
Statistics
Matches: 153, Mismatches: 23, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 153 1.00
ACGTcount: A:0.40, C:0.07, G:0.24, T:0.29
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAACG
Found at i:15928558 original size:24 final size:25
Alignment explanation
Indices: 15928531--15928605 Score: 120
Period size: 23 Copynumber: 3.1 Consensus size: 25
15928521 GCCTAGCCTC
15928531 TTTTAATAACTGGGGCA-AAGCCCT
1 TTTTAATAACTGGGGCATAAGCCCT
*
15928555 TTTTAATAACCGGGGCATAAGCCC-
1 TTTTAATAACTGGGGCATAAGCCCT
15928579 -TTTAATAACTGGGGCATAAGCCCT
1 TTTTAATAACTGGGGCATAAGCCCT
15928603 TTT
1 TTT
15928606 GCACTTCCTC
Statistics
Matches: 46, Mismatches: 2, Indels: 5
0.87 0.04 0.09
Matches are distributed among these distances:
23 22 0.48
24 16 0.35
25 8 0.17
ACGTcount: A:0.28, C:0.21, G:0.20, T:0.31
Consensus pattern (25 bp):
TTTTAATAACTGGGGCATAAGCCCT
Found at i:15928677 original size:9 final size:9
Alignment explanation
Indices: 15928663--15928739 Score: 55
Period size: 9 Copynumber: 7.9 Consensus size: 9
15928653 ATCTCGTGTG
15928663 CATATCATA
1 CATATCATA
*
15928672 CATATCATGTG
1 CATATCA--TA
15928683 CATATCATA
1 CATATCATA
* * *
15928692 CGTGTCATGTG
1 CATATCA--TA
15928703 CATATCATA
1 CATATCATA
*
15928712 CATATCATGTG
1 CATATCA--TA
15928723 CATATCATA
1 CATATCATA
15928732 CATATCAT
1 CATATCAT
15928740 GTTTATCAAA
Statistics
Matches: 52, Mismatches: 10, Indels: 12
0.70 0.14 0.16
Matches are distributed among these distances:
9 30 0.58
11 22 0.42
ACGTcount: A:0.34, C:0.21, G:0.10, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:15928682 original size:20 final size:20
Alignment explanation
Indices: 15928659--15928741 Score: 148
Period size: 20 Copynumber: 4.2 Consensus size: 20
15928649 GAACATCTCG
15928659 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
* *
15928679 TGTGCATATCATACGTGTCA
1 TGTGCATATCATACATATCA
15928699 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
15928719 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
15928739 TGT
1 TGT
15928742 TTATCAAAAT
Statistics
Matches: 59, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 59 1.00
ACGTcount: A:0.31, C:0.19, G:0.13, T:0.36
Consensus pattern (20 bp):
TGTGCATATCATACATATCA
Found at i:15928688 original size:11 final size:11
Alignment explanation
Indices: 15928659--15928730 Score: 57
Period size: 11 Copynumber: 7.1 Consensus size: 11
15928649 GAACATCTCG
15928659 TGTGCATATCA
1 TGTGCATATCA
*
15928670 --TACATATCA
1 TGTGCATATCA
15928679 TGTGCATATCA
1 TGTGCATATCA
* * *
15928690 --TACGTGTCA
1 TGTGCATATCA
15928699 TGTGCATATCA
1 TGTGCATATCA
*
15928710 --TACATATCA
1 TGTGCATATCA
15928719 TGTGCATATCA
1 TGTGCATATCA
15928730 T
1 T
15928731 ACATATCATG
Statistics
Matches: 45, Mismatches: 10, Indels: 12
0.67 0.15 0.18
Matches are distributed among these distances:
9 22 0.49
11 23 0.51
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.36
Consensus pattern (11 bp):
TGTGCATATCA
Found at i:15928806 original size:25 final size:25
Alignment explanation
Indices: 15928778--15928825 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
15928768 ATGTATAAAC
* * *
15928778 CCTAGAGGTATAATGGTCATTTTTA
1 CCTAGAGGCAAAACGGTCATTTTTA
*
15928803 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGAGGCAAAACGGTCATTTT
15928826 CATATTATAA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.27, C:0.17, G:0.23, T:0.33
Consensus pattern (25 bp):
CCTAGAGGCAAAACGGTCATTTTTA
Found at i:15930093 original size:27 final size:27
Alignment explanation
Indices: 15930064--15930402 Score: 416
Period size: 27 Copynumber: 12.6 Consensus size: 27
15930054 GGGTATTTTA
* *
15930064 GTAATTTTGTAAATCGAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACG
* * *
15930091 GTAATTCTGTAAATCAAGGGTGAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
15930118 GTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
15930145 GTAATTCTGTAAATTGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
15930172 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
15930199 ATAATTATGTAAATCG-GAGGTAAAACG
1 GTAATTCTGTAAATCGAG-GGTAAAACG
* * **
15930226 GTAATTATGTAAATTG-GGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACG
**
15930252 GTAATTCTGTAAATCGAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACG
15930279 GTAATTCTGTAAA-CTGAGGGTAAAACG
1 GTAATTCTGTAAATC-GAGGGTAAAACG
15930306 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* ** *
15930333 GTAATTTTACAAATCGTGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
15930360 GTAATTCTAT-AACCTGAGGGTAAAACG
1 GTAATTCTGTAAATC-GAGGGTAAAACG
*
15930387 ATAATTCTGTAAATCG
1 GTAATTCTGTAAATCG
15930403 GGAGTACTTT
Statistics
Matches: 273, Mismatches: 33, Indels: 12
0.86 0.10 0.04
Matches are distributed among these distances:
26 26 0.10
27 243 0.89
28 4 0.01
ACGTcount: A:0.39, C:0.09, G:0.23, T:0.29
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAACG
Found at i:15941606 original size:40 final size:40
Alignment explanation
Indices: 15941551--15941718 Score: 196
Period size: 40 Copynumber: 4.2 Consensus size: 40
15941541 TGAATGATAC
* *
15941551 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* *
15941591 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATTATAT
* * ** *
15941631 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* * * *
15941671 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
15941711 CC-GGCTAA
1 CCGGGCTAA
15941719 ATTCCGAAGA
Statistics
Matches: 106, Mismatches: 20, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
39 6 0.06
40 98 0.92
41 2 0.02
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
Found at i:15949673 original size:40 final size:40
Alignment explanation
Indices: 15949618--15949784 Score: 194
Period size: 40 Copynumber: 4.2 Consensus size: 40
15949608 GAATGATACT
* *
15949618 CGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATATC
1 CGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATATC
* *
15949658 CGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG-TTATATC
1 CGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATTATATC
* * ** *
15949698 CGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAATC
1 CGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATATC
* * * *
15949738 CGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATATC
1 CGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATATC
15949778 C-GGCTAA
1 CGGGCTAA
15949785 ATTCCGAAGA
Statistics
Matches: 105, Mismatches: 20, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
39 6 0.06
40 97 0.92
41 2 0.02
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
CGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATATC
Found at i:15955620 original size:38 final size:38
Alignment explanation
Indices: 15955556--15955722 Score: 167
Period size: 40 Copynumber: 4.2 Consensus size: 38
15955546 CGGGACTTTA
* *
15955556 CCCGGATATCACGATTTGCACAAATGCCTTCGGGTCTTAG
1 CCCGGATATAAC-A-TTGCACAATTGCCTTCGGGTCTTAG
*
15955596 CCCGGATTTAACATTGCACGAA-TGCCTTCGGGTCTTAG
1 CCCGGATATAACATTGCAC-AATTGCCTTCGGGTCTTAG
* * *
15955634 CCCGGATATAGCTACTAGCACAATTGCCTTCGGGTCTTAA
1 CCCGGATATAAC-A-TTGCACAATTGCCTTCGGGTCTTAG
* * *
15955674 CCCGGATATAA-ATTTCAGCATAATTGTCTTCGGGGCTTAG
1 CCCGGATATAACA-TT--GCACAATTGCCTTCGGGTCTTAG
15955714 CCCGGATAT
1 CCCGGATAT
15955723 CATTCAATTT
Statistics
Matches: 108, Mismatches: 13, Indels: 12
0.81 0.10 0.09
Matches are distributed among these distances:
38 34 0.31
39 6 0.06
40 68 0.63
ACGTcount: A:0.23, C:0.26, G:0.22, T:0.29
Consensus pattern (38 bp):
CCCGGATATAACATTGCACAATTGCCTTCGGGTCTTAG
Found at i:15955662 original size:78 final size:80
Alignment explanation
Indices: 15955573--15955722 Score: 207
Period size: 78 Copynumber: 1.9 Consensus size: 80
15955563 ATCACGATTT
* * *
15955573 GCACAAATGCCTTCGGGTCTTAGCCCGGATTTAACATTGCA-C-GAA-TGCCTTCGGGTCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATATAA-ATTGCAGCAGAATTGCCTTCGGGGCTTAGC
15955635 CCGGATATAGCTACTA
65 CCGGATATAGCTACTA
* * * *
15955651 GCACAATTGCCTTCGGGTCTTAACCCGGATATAAATTTCAGCATAATTGTCTTCGGGGCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATATAAATTGCAGCAGAATTGCCTTCGGGGCTTAGCC
15955716 CGGATAT
66 CGGATAT
15955723 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
77 5 0.08
78 32 0.52
79 2 0.03
80 23 0.37
ACGTcount: A:0.23, C:0.25, G:0.23, T:0.29
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATATAAATTGCAGCAGAATTGCCTTCGGGGCTTAGCC
CGGATATAGCTACTA
Found at i:15963639 original size:40 final size:40
Alignment explanation
Indices: 15963580--15963747 Score: 173
Period size: 40 Copynumber: 4.2 Consensus size: 40
15963570 CGGGACTTTA
* * *
15963580 CCCGGATATCACGATTTGCACAAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* *
15963620 CCCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * * * *
15963660 CCCGGATATAGCTACTAGCACAATTGCCTTCGGGTCTTAA
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* *
15963700 CCCGGATAT-A-AA-TTTCAGCATAATTGTCTTCGGG-CTTAG
1 CCCGGATATAACAACTTGCA-CA-AA-TGCCTTCGGGTCTTAG
15963739 CCCGGATAT
1 CCCGGATAT
15963748 CATTCAATTT
Statistics
Matches: 106, Mismatches: 19, Indels: 7
0.80 0.14 0.05
Matches are distributed among these distances:
37 3 0.03
38 3 0.03
39 14 0.13
40 86 0.81
ACGTcount: A:0.24, C:0.26, G:0.21, T:0.29
Consensus pattern (40 bp):
CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
Found at i:15970449 original size:41 final size:41
Alignment explanation
Indices: 15970404--15970521 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
15970394 TGAAAGATAA
15970404 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
15970445 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
15970475 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
15970516 ATGTAG
1 ATGTAG
15970522 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:15970460 original size:71 final size:71
Alignment explanation
Indices: 15970372--15970535 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
15970362 GAGATGTATC
15970372 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
15970437 AGGACA
66 AGGACA
15970443 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
15970508 AGGACA
66 AGGACA
15970514 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
15970536 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:15983071 original size:46 final size:48
Alignment explanation
Indices: 15982827--15983189 Score: 227
Period size: 46 Copynumber: 7.7 Consensus size: 48
15982817 AAGGTATAAT
* * *
15982827 GTCGATGCCATGTCCCAGACATGGTCTTATACTGGCTCATCCATC---AA
1 GTCGATG-CATGTCCCAGACATGGTCTTACACTGGCTC-TACATCTTGAG
* * * *
15982874 GTCGATGCGATGTCCCAGACATGGTCTTTCACTGACTATCAAAATC--GAG
1 GTCGATGC-ATGTCCCAGACATGGTCTTACACTGGC--TCTACATCTTGAG
* ** * * ** *
15982923 GCCGACACCATGTCCCTGACATGGTCTTACACTGGCTCTCACATATCCAT
1 GTCGA-TGCATGTCCCAGACATGGTCTTACACTGGCTCT-ACATCTTGAG
* ** *
15982973 GTCGATGCCATGTCCCAGACATGGTCTTGCACT--AAC-ATATCTTGTA-
1 GTCGATG-CATGTCCCAGACATGGTCTTACACTGGCTCTACATCTTG-AG
*
15983019 GCCGATGCATGTCCCAGACAT-GTCTTACACTGGCT-TACATCTTGAG
1 GTCGATGCATGTCCCAGACATGGTCTTACACTGGCTCTACATCTTGAG
** * ** *
15983065 GTCGATGCATGTCCCAGACAT-GTCTTACACCAGCTCT-CGTCTCAAT
1 GTCGATGCATGTCCCAGACATGGTCTTACACTGGCTCTACATCTTGAG
* * ** *
15983111 G-CTGATGCCATTTCCCAGACATGGTCTTACACTAGCTCT-CATAATGTG
1 GTC-GATG-CATGTCCCAGACATGGTCTTACACTGGCTCTACATCTTGAG
*
15983159 GTCGATGCATGTCCCAGACAT-GTCTTGCACT
1 GTCGATGCATGTCCCAGACATGGTCTTACACT
15983190 AGTGCACAAA
Statistics
Matches: 245, Mismatches: 52, Indels: 39
0.73 0.15 0.12
Matches are distributed among these distances:
44 9 0.04
45 16 0.07
46 69 0.28
47 61 0.25
48 29 0.12
49 32 0.13
50 29 0.12
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (48 bp):
GTCGATGCATGTCCCAGACATGGTCTTACACTGGCTCTACATCTTGAG
Found at i:15983138 original size:94 final size:93
Alignment explanation
Indices: 15982829--15983184 Score: 291
Period size: 94 Copynumber: 3.8 Consensus size: 93
15982819 GGTATAATGT
* *
15982829 CGATGCCATGTCCCAGACATGGTCTTATACTGGCTCATCCATCA---A-GTCGATGCGATGTCCC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTC-TACAT-ATTGAGGTCGATGC-ATGTCCC
* ** * *
15982890 AGACATGGTCTTTCACTGAC-TATCAAAATCGAGGC
63 AGACAT-GTCTTACACCAACATATC---TTC-AAGC
** * ** *
15982925 CGACACCATGTCCCTGACATGGTCTTACACTGGCTCTCACATATCCATGTCGATGCCATGTCCCA
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCT-ACATATTGAGGTCGATG-CATGTCCCA
* * **
15982990 GACATGGTCTTGCACTAACATATCTTGTAGC
64 GACAT-GTCTTACACCAACATATCTTCAAGC
*
15983021 CGATG-CATGTCCCAGACAT-GTCTTACACTGGCT-TACATCTTGAGGTCGATGCATGTCCCAGA
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTACATATTGAGGTCGATGCATGTCCCAGA
* *
15983083 CATGTCTTACACCAGC-TCTCGTCTCAATGC
66 CATGTCTTACACCAACATATC-T-TCAA-GC
* * * * *
15983113 TGATGCCATTTCCCAGACATGGTCTTACACTAGCTCT-CATAATGTGGTCGATGCATGTCCCAGA
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTACATATTGAGGTCGATGCATGTCCCAGA
15983177 CATGTCTT
66 CATGTCTT
15983185 GCACTAGTGC
Statistics
Matches: 217, Mismatches: 30, Indels: 28
0.79 0.11 0.10
Matches are distributed among these distances:
89 3 0.01
90 11 0.05
91 16 0.07
92 19 0.09
93 14 0.06
94 59 0.27
95 16 0.07
96 40 0.18
97 1 0.00
98 1 0.00
99 32 0.15
100 5 0.02
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.28
Consensus pattern (93 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTACATATTGAGGTCGATGCATGTCCCAGA
CATGTCTTACACCAACATATCTTCAAGC
Found at i:15988194 original size:86 final size:86
Alignment explanation
Indices: 15988057--15988222 Score: 278
Period size: 86 Copynumber: 1.9 Consensus size: 86
15988047 TACAAGGCAC
* * * *
15988057 TATATGGTCGTAGGTGTCGTACTCCTTCGTGTTGGACTGAGTTGGGTGAGTGGCATGTTCTGGGT
1 TATATGGTCATAGGTGTCATACTCCTTCATGTGGGACTGAGTTGGGTGAGTGGCATGTTCTGGGT
*
15988122 CGTGAATTGATTTCAAGGAAA
66 CCTGAATTGATTTCAAGGAAA
*
15988143 TATATGGTCATAGGTGTCATACTCCTTCATGTGGGACTGAGTTGGGTGAGTGGCGTGTTCTGGGT
1 TATATGGTCATAGGTGTCATACTCCTTCATGTGGGACTGAGTTGGGTGAGTGGCATGTTCTGGGT
15988208 CCTGAATTGATTTCA
66 CCTGAATTGATTTCA
15988223 GATATATAGG
Statistics
Matches: 74, Mismatches: 6, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
86 74 1.00
ACGTcount: A:0.18, C:0.14, G:0.33, T:0.36
Consensus pattern (86 bp):
TATATGGTCATAGGTGTCATACTCCTTCATGTGGGACTGAGTTGGGTGAGTGGCATGTTCTGGGT
CCTGAATTGATTTCAAGGAAA
Found at i:15990768 original size:27 final size:27
Alignment explanation
Indices: 15990703--15990769 Score: 71
Period size: 27 Copynumber: 2.5 Consensus size: 27
15990693 AAATAACTAT
* * * * *
15990703 TATACCTCTTTGAGGTAAAGTGATTGT
1 TATACCCCTATGAGGTAAAATGACTGA
* *
15990730 TATGCCCTTATGAGGTAAAATGACTGA
1 TATACCCCTATGAGGTAAAATGACTGA
15990757 TATACCCCTATGA
1 TATACCCCTATGA
15990770 TATGTATAAC
Statistics
Matches: 31, Mismatches: 9, Indels: 0
0.77 0.22 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.30, C:0.16, G:0.19, T:0.34
Consensus pattern (27 bp):
TATACCCCTATGAGGTAAAATGACTGA
Found at i:15997729 original size:43 final size:41
Alignment explanation
Indices: 15997681--15997820 Score: 163
Period size: 43 Copynumber: 3.3 Consensus size: 41
15997671 TAACCCAGAT
* * *
15997681 ATGGTCTTACATGTTATCACATATCGATGCCAATGTCCCAAAC
1 ATGGTCTTACATGTAATCA-ATAT-GATGCCAATGTCCTAGAC
* * *
15997724 ATGGTCTTACACGAAATCATATAATGATGCCAATGTCCTAGGC
1 ATGGTCTTACATGTAATCA-AT-ATGATGCCAATGTCCTAGAC
*
15997767 ATGGTCTTACATGTAATTGCAATATGATGCCAATGTTCTAGAC
1 ATGGTCTTACATGTAA-T-CAATATGATGCCAATGTCCTAGAC
15997810 ATGGTCTTACA
1 ATGGTCTTACA
15997821 CATAATCACA
Statistics
Matches: 83, Mismatches: 11, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
43 76 0.92
44 5 0.06
45 2 0.02
ACGTcount: A:0.31, C:0.21, G:0.17, T:0.31
Consensus pattern (41 bp):
ATGGTCTTACATGTAATCAATATGATGCCAATGTCCTAGAC
Found at i:16002076 original size:29 final size:29
Alignment explanation
Indices: 16002026--16002097 Score: 74
Period size: 29 Copynumber: 2.5 Consensus size: 29
16002016 AAGTGAGCCA
** * *
16002026 TTATGGCTATCTCTGTCCAAAGGATGGCT
1 TTATGGCTATCTCTGTAAAAAGAATGCCT
16002055 TTATGGCTATCT-TAGTAAAAAGAATGCCT
1 TTATGGCTATCTCT-GTAAAAAGAATGCCT
**
16002084 TTGCGGCTATCTCT
1 TTATGGCTATCTCT
16002098 CTTAAAGGAA
Statistics
Matches: 35, Mismatches: 6, Indels: 3
0.80 0.14 0.07
Matches are distributed among these distances:
28 1 0.03
29 33 0.94
30 1 0.03
ACGTcount: A:0.24, C:0.19, G:0.21, T:0.36
Consensus pattern (29 bp):
TTATGGCTATCTCTGTAAAAAGAATGCCT
Found at i:16002853 original size:24 final size:24
Alignment explanation
Indices: 16002819--16002866 Score: 78
Period size: 24 Copynumber: 2.0 Consensus size: 24
16002809 CAAAGTCTGC
* *
16002819 ACATAATTCATTTGAGTAGACATT
1 ACATAAGTCATTTGAATAGACATT
16002843 ACATAAGTCATTTGAATAGACATT
1 ACATAAGTCATTTGAATAGACATT
16002867 TAATATGTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.40, C:0.12, G:0.12, T:0.35
Consensus pattern (24 bp):
ACATAAGTCATTTGAATAGACATT
Found at i:16004164 original size:19 final size:18
Alignment explanation
Indices: 16004139--16004186 Score: 53
Period size: 17 Copynumber: 2.6 Consensus size: 18
16004129 AGAAATGAAA
*
16004139 AAAAAAAAAAGAGAATATG
1 AAAAAAAAAAGAGAA-AAG
*
16004158 AAGAAAAACAA-AGAAAAG
1 AA-AAAAAAAAGAGAAAAG
16004176 AAAAAAAAAAG
1 AAAAAAAAAAG
16004187 TGTTCATTCT
Statistics
Matches: 24, Mismatches: 3, Indels: 5
0.75 0.09 0.16
Matches are distributed among these distances:
17 7 0.29
18 4 0.17
19 6 0.25
20 7 0.29
ACGTcount: A:0.79, C:0.02, G:0.15, T:0.04
Consensus pattern (18 bp):
AAAAAAAAAAGAGAAAAG
Found at i:16004694 original size:30 final size:29
Alignment explanation
Indices: 16004658--16004719 Score: 115
Period size: 30 Copynumber: 2.1 Consensus size: 29
16004648 CTAGAAGAGA
16004658 AAAGAAATTTGGCCAACTGTTCATGGGAGG
1 AAAGAAATTTGGCCAACTGTTCAT-GGAGG
16004688 AAAGAAATTTGGCCAACTGTTCATGGAGG
1 AAAGAAATTTGGCCAACTGTTCATGGAGG
16004717 AAA
1 AAA
16004720 ACTAAGTGTT
Statistics
Matches: 32, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
29 8 0.25
30 24 0.75
ACGTcount: A:0.37, C:0.13, G:0.27, T:0.23
Consensus pattern (29 bp):
AAAGAAATTTGGCCAACTGTTCATGGAGG
Found at i:16005409 original size:29 final size:29
Alignment explanation
Indices: 16005376--16005509 Score: 151
Period size: 29 Copynumber: 4.6 Consensus size: 29
16005366 GTGACGAGAT
16005376 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
16005405 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* *
16005434 TGGCACTAAGTGTGCATGCTGGAAAAAAATA
1 TGGCACTAAGTGTGCGTGCTGG--AAATATA
* * * * ***
16005465 CGGCACTAGGTGTGCGAGCTCGAAGGGTA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
16005494 TGGCACTATGTGTGCG
1 TGGCACTAAGTGTGCG
16005510 GGCTTAAATC
Statistics
Matches: 91, Mismatches: 12, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
29 68 0.75
31 23 0.25
ACGTcount: A:0.28, C:0.16, G:0.32, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:16005479 original size:31 final size:29
Alignment explanation
Indices: 16005376--16005458 Score: 157
Period size: 29 Copynumber: 2.9 Consensus size: 29
16005366 GTGACGAGAT
*
16005376 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
16005405 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
16005434 TGGCACTAAGTGTGCATGCTGGAAA
1 TGGCACTAAGTGTGCATGCTGGAAA
16005459 AAAATACGGC
Statistics
Matches: 53, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 53 1.00
ACGTcount: A:0.29, C:0.14, G:0.30, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:16005499 original size:60 final size:58
Alignment explanation
Indices: 16005372--16005508 Score: 152
Period size: 60 Copynumber: 2.3 Consensus size: 58
16005362 TACGGTGACG
* * * *
16005372 AGAT-TGGCACTAAGTGTGCGTGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAA
1 AGATATGGCACTAAGTGTGCATGCTGGAAAAATACGGCACTAAGTGTGCATGCTCGAA
* *
16005429 ATATATGGCACTAAGTGTGCATGCTGGAAAAAAATACGGCACTAGGTGTGCGA-GCTCGAA
1 AGATATGGCACTAAGTGTGCATGCTGG--AAAAATACGGCACTAAGTGTGC-ATGCTCGAA
* * *
16005489 GGGTATGGCACTATGTGTGC
1 AGATATGGCACTAAGTGTGC
16005509 GGGCTTAAAT
Statistics
Matches: 66, Mismatches: 10, Indels: 5
0.81 0.12 0.06
Matches are distributed among these distances:
57 3 0.05
58 21 0.32
60 41 0.62
61 1 0.02
ACGTcount: A:0.28, C:0.15, G:0.31, T:0.25
Consensus pattern (58 bp):
AGATATGGCACTAAGTGTGCATGCTGGAAAAATACGGCACTAAGTGTGCATGCTCGAA
Found at i:16018663 original size:40 final size:39
Alignment explanation
Indices: 16018498--16018681 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
16018488 GAAATTGATG
* * *
16018498 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
16018538 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
16018578 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
16018618 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
16018657 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
16018682 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:16018706 original size:80 final size:81
Alignment explanation
Indices: 16018538--16018726 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
16018528 GCTGGAAATT
* * * *
16018538 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
16018603 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
16018619 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
16018682 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
16018698 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
16018727 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:16026955 original size:29 final size:28
Alignment explanation
Indices: 16026921--16027023 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
16026911 TACTCAATCA
*
16026921 CGCACACTTAGTGCCATATGATTCAAGCC
1 CGCACACTTAGTGCCATAT-ATTCAAGCT
* * *
16026950 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCATATA-TTCAAGCT
* *
16026979 CGCACACTTAGTGCCGTACATTACAAGCT
1 CGCACACTTAGTGCCATATATT-CAAGCT
*
16027008 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
16027024 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
28 2 0.03
29 59 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (28 bp):
CGCACACTTAGTGCCATATATTCAAGCT
Found at i:16030834 original size:23 final size:23
Alignment explanation
Indices: 16030794--16030908 Score: 90
Period size: 23 Copynumber: 4.9 Consensus size: 23
16030784 AAGCTCCTCC
16030794 TGAGCTGATAACAGTAAGCTCTAA
1 TGAGCTGA-AACAGTAAGCTCTAA
*
16030818 TGAGCTGAAACAATAAGCTCT-A
1 TGAGCTGAAACAGTAAGCTCTAA
* *
16030840 TAGAGTTGAAACGGTAAGCTCT-A
1 T-GAGCTGAAACAGTAAGCTCTAA
* * * *
16030863 TCGAGTTGAAACGGTAAACTCCAA
1 T-GAGCTGAAACAGTAAGCTCTAA
* * *
16030887 TAAGATGAAAATAGTAAGCTCT
1 TGAGCTG-AAACAGTAAGCTCT
16030909 TTCGAGTTGA
Statistics
Matches: 75, Mismatches: 13, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
22 2 0.03
23 53 0.71
24 20 0.27
ACGTcount: A:0.39, C:0.16, G:0.21, T:0.24
Consensus pattern (23 bp):
TGAGCTGAAACAGTAAGCTCTAA
Found at i:16031206 original size:31 final size:31
Alignment explanation
Indices: 16031168--16031227 Score: 120
Period size: 31 Copynumber: 1.9 Consensus size: 31
16031158 GAGTTGCTCG
16031168 GATGAAAACTATCATCTATTTGCCAACCTCA
1 GATGAAAACTATCATCTATTTGCCAACCTCA
16031199 GATGAAAACTATCATCTATTTGCCAACCT
1 GATGAAAACTATCATCTATTTGCCAACCT
16031228 TTCTTTTTCC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.35, C:0.25, G:0.10, T:0.30
Consensus pattern (31 bp):
GATGAAAACTATCATCTATTTGCCAACCTCA
Found at i:16040086 original size:27 final size:27
Alignment explanation
Indices: 16040050--16040120 Score: 106
Period size: 27 Copynumber: 2.6 Consensus size: 27
16040040 TTAGTTTACC
*
16040050 AAATTACCAAAACACCCTCAATTAGCA
1 AAATTACCAAAACACCCTCAATTAGAA
* * *
16040077 AAATTACCAAAATAACCTCGATTAGAA
1 AAATTACCAAAACACCCTCAATTAGAA
16040104 AAATTACCAAAACACCC
1 AAATTACCAAAACACCC
16040121 CTGGTTTGTA
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 38 1.00
ACGTcount: A:0.51, C:0.27, G:0.04, T:0.18
Consensus pattern (27 bp):
AAATTACCAAAACACCCTCAATTAGAA
Found at i:16040162 original size:27 final size:27
Alignment explanation
Indices: 16040139--16040264 Score: 108
Period size: 27 Copynumber: 5.0 Consensus size: 27
16040129 TAAAATTATC
16040139 GAAATACCCCTGTAGGGTAGAATTACT
1 GAAATACCCCTGTAGGGTAGAATTACT
*
16040166 GAAATATCCC--TA---T---ATTACT
1 GAAATACCCCTGTAGGGTAGAATTACT
* *
16040185 AAAATACCCCTGTAAGGTAGAATTA-T
1 GAAATACCCCTGTAGGGTAGAATTACT
* * *
16040211 CGAAATACCCTTGGAGGGTAGAAATACT
1 -GAAATACCCCTGTAGGGTAGAATTACT
* *
16040239 GAAATACCTCTATAGGGTAGAATTAC
1 GAAATACCCCTGTAGGGTAGAATTAC
16040265 CAAGATACCC
Statistics
Matches: 76, Mismatches: 13, Indels: 20
0.70 0.12 0.18
Matches are distributed among these distances:
19 14 0.18
21 2 0.03
22 1 0.01
24 1 0.01
25 2 0.03
26 1 0.01
27 54 0.71
28 1 0.01
ACGTcount: A:0.37, C:0.17, G:0.18, T:0.27
Consensus pattern (27 bp):
GAAATACCCCTGTAGGGTAGAATTACT
Found at i:16040991 original size:27 final size:26
Alignment explanation
Indices: 16040947--16040998 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
16040937 CTCGCTGCAA
*
16040947 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
16040974 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
16040999 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:16041066 original size:26 final size:27
Alignment explanation
Indices: 16041037--16041096 Score: 77
Period size: 27 Copynumber: 2.3 Consensus size: 27
16041027 GCACATATAT
*
16041037 ATATCTGT-TCTGGTGGCCTAGCCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
* * *
16041063 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
16041090 ATATCTG
1 ATATCTG
16041097 GCAGCCTCGC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.35
Consensus pattern (27 bp):
ATATCTGTATCTGGTGACCTAGCCACA
Found at i:16044223 original size:29 final size:27
Alignment explanation
Indices: 16044189--16044291 Score: 98
Period size: 29 Copynumber: 3.6 Consensus size: 27
16044179 TACTCAATCA
*
16044189 CGCACACTTAGTGCCATGTGATTCAAGCC
1 CGCACACTTAGTGCCAT-T-ATTCAAGCT
* * *
16044218 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCAT-TA-TTCAAGCT
*
16044247 CGCACACTTAGTGCCATACATTACAAGCT
1 CGCACACTTAGTGCCAT-TATT-CAAGCT
*
16044276 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
16044292 ATCTCGTCAC
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 2 0.03
29 60 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (27 bp):
CGCACACTTAGTGCCATTATTCAAGCT
Found at i:16052019 original size:29 final size:27
Alignment explanation
Indices: 16051985--16052087 Score: 98
Period size: 29 Copynumber: 3.6 Consensus size: 27
16051975 TACTCAATCA
*
16051985 CGCACACTTAGTGCCATGTGATTCAAGCC
1 CGCACACTTAGTGCCAT-T-ATTCAAGCT
* * *
16052014 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCAT-TA-TTCAAGCT
*
16052043 CGCACACTTAGTGCCATACATTACAAGCT
1 CGCACACTTAGTGCCAT-TATT-CAAGCT
*
16052072 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
16052088 ATCTCGTCAC
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 2 0.03
29 60 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (27 bp):
CGCACACTTAGTGCCATTATTCAAGCT
Found at i:16054040 original size:27 final size:27
Alignment explanation
Indices: 16053926--16054023 Score: 169
Period size: 27 Copynumber: 3.6 Consensus size: 27
16053916 TTAGTTTACC
*
16053926 AAATTACCAAAATACCCTCGATTAGAA
1 AAATTACCAAAATACCCTCGATTAGCA
*
16053953 AAATTACCAAAATACCTTCGATTAGCA
1 AAATTACCAAAATACCCTCGATTAGCA
16053980 AAATTACCAAAATACCCTCGATTAGCA
1 AAATTACCAAAATACCCTCGATTAGCA
*
16054007 AATTTACCAAAATACCC
1 AAATTACCAAAATACCC
16054024 CTGGTTTGTA
Statistics
Matches: 67, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 67 1.00
ACGTcount: A:0.46, C:0.24, G:0.06, T:0.23
Consensus pattern (27 bp):
AAATTACCAAAATACCCTCGATTAGCA
Found at i:16054202 original size:54 final size:54
Alignment explanation
Indices: 16054035--16054228 Score: 230
Period size: 54 Copynumber: 3.6 Consensus size: 54
16054025 TGGTTTGTAA
* * *
16054035 AATTACTG-AATACCCTTGTAGGGTAGAATTACTGAAATACCCCTGTAAGGTAT
1 AATTACCGAAATACCCTTGTAGGGTAGAATTACTGAAATACCCCTATAAGGTAG
** * * * *
16054088 AATTACAAAAATACCCCTATAAGGTAGAATTACTGAAATACCCTTATAAGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAGAATTACTGAAATACCCCTATAAGGTAG
* * *
16054142 AATTACCGAAATACCCTTGTAGGGTTGAAATA-TCGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAGAATTACT-GAAATACCCCTATAAGGTAG
* * *
16054196 AATTACCGAGATACCCTTGTGGGGTAAAATTAC
1 AATTACCGAAATACCCTTGTAGGGTAGAATTAC
16054229 CATTTTGCCC
Statistics
Matches: 116, Mismatches: 22, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
53 7 0.06
54 109 0.94
ACGTcount: A:0.37, C:0.18, G:0.18, T:0.27
Consensus pattern (54 bp):
AATTACCGAAATACCCTTGTAGGGTAGAATTACTGAAATACCCCTATAAGGTAG
Found at i:16054227 original size:81 final size:80
Alignment explanation
Indices: 16054035--16054229 Score: 241
Period size: 81 Copynumber: 2.4 Consensus size: 80
16054025 TGGTTTGTAA
* *
16054035 AATTACTGAATACCCTTGTAGGGTAGAATTACTGAAATACCCCTGTAAGGTATAATTACAAAAAT
1 AATTACTGAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTGTAAGGTATAAATACAAAAAT
16054100 ACCCCTATAAGGTAG
66 ACCCCTATAAGGTAG
* * * * *
16054115 AATTACTGAAATACCCTTATAAGGTAGAATTACCGAAATACCCTTGTAGGGT-TGAAATATC-GA
1 AATTACTG-AATACCCTTGTAGGGTAGAATTACCGAAATACCCCTGTAAGGTAT-AAATA-CAAA
*
16054178 AATACCCCTATAGGGTAG
63 AATACCCCTATAAGGTAG
* * *
16054196 AATTACCGAGATACCCTTGTGGGGTAAAATTACC
1 AATTACTGA-ATACCCTTGTAGGGTAGAATTACC
16054230 ATTTTGCCCT
Statistics
Matches: 98, Mismatches: 13, Indels: 7
0.83 0.11 0.06
Matches are distributed among these distances:
80 10 0.10
81 87 0.89
82 1 0.01
ACGTcount: A:0.37, C:0.18, G:0.18, T:0.27
Consensus pattern (80 bp):
AATTACTGAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTGTAAGGTATAAATACAAAAAT
ACCCCTATAAGGTAG
Found at i:16054229 original size:27 final size:27
Alignment explanation
Indices: 16054035--16054229 Score: 194
Period size: 27 Copynumber: 7.3 Consensus size: 27
16054025 TGGTTTGTAA
*
16054035 AATTACTG-AATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* * * *
16054061 AATTACTGAAATACCCCTGTAAGGTAT
1 AATTACCGAAATACCCTTGTAGGGTAG
** * * *
16054088 AATTACAAAAATACCCCTATAAGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* * *
16054115 AATTACTGAAATACCCTTATAAGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
*
16054142 AATTACCGAAATACCCTTGTAGGGTTG
1 AATTACCGAAATACCCTTGTAGGGTAG
* * * *
16054169 AAATATCGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* * *
16054196 AATTACCGAGATACCCTTGTGGGGTAA
1 AATTACCGAAATACCCTTGTAGGGTAG
16054223 AATTACC
1 AATTACC
16054230 ATTTTGCCCT
Statistics
Matches: 142, Mismatches: 26, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
26 8 0.06
27 134 0.94
ACGTcount: A:0.37, C:0.18, G:0.18, T:0.27
Consensus pattern (27 bp):
AATTACCGAAATACCCTTGTAGGGTAG
Found at i:16054967 original size:2 final size:2
Alignment explanation
Indices: 16054960--16055015 Score: 112
Period size: 2 Copynumber: 28.0 Consensus size: 2
16054950 GCTTCGCCAC
16054960 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
16055002 AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT
16055016 CTGTTCTGGT
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 54 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:16058848 original size:28 final size:28
Alignment explanation
Indices: 16058778--16058897 Score: 134
Period size: 28 Copynumber: 4.2 Consensus size: 28
16058768 ATTGCATGAC
*
16058778 TATGAATGTGATTGGACCTGAAGGGCCA
1 TATGAATGTGATTGGGCCTGAAGGGCCA
* * *
16058806 TATGAAAGCGATTGGGCCTGATGGGCCA
1 TATGAATGTGATTGGGCCTGAAGGGCCA
* * *
16058834 TATGAATGTGGTTGGG-CTCGAGGGGCTA
1 TATGAATGTGATTGGGCCT-GAAGGGCCA
*
16058862 TATGAATGTGATTGGGCCTAAAGGGGCCA
1 TATGAATGTGATTGGGCCTGAA-GGGCCA
*
16058891 AATGAAT
1 TATGAAT
16058898 AAGTATGGAT
Statistics
Matches: 75, Mismatches: 14, Indels: 5
0.80 0.15 0.05
Matches are distributed among these distances:
27 2 0.03
28 60 0.80
29 13 0.17
ACGTcount: A:0.27, C:0.13, G:0.35, T:0.25
Consensus pattern (28 bp):
TATGAATGTGATTGGGCCTGAAGGGCCA
Found at i:16063482 original size:28 final size:28
Alignment explanation
Indices: 16063442--16063542 Score: 123
Period size: 28 Copynumber: 3.6 Consensus size: 28
16063432 ATTGCATGAT
*
16063442 TATGAATGTGATTGGGCCTGACGGGCCA
1 TATGAAAGTGATTGGGCCTGACGGGCCA
* *
16063470 TATGAAAGTGATTGGGCCTGATGGACCA
1 TATGAAAGTGATTGGGCCTGACGGGCCA
* * * *
16063498 TATGAATGTGACTGGG-ATCGAGGGGCCA
1 TATGAAAGTGATTGGGCCT-GACGGGCCA
16063526 TATGAAAGTGATTGGGC
1 TATGAAAGTGATTGGGC
16063543 TTAAAGGGGC
Statistics
Matches: 61, Mismatches: 10, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
27 1 0.02
28 60 0.98
ACGTcount: A:0.26, C:0.14, G:0.36, T:0.25
Consensus pattern (28 bp):
TATGAAAGTGATTGGGCCTGACGGGCCA
Found at i:16066619 original size:68 final size:70
Alignment explanation
Indices: 16066547--16066744 Score: 276
Period size: 71 Copynumber: 2.8 Consensus size: 70
16066537 ACACCCTGTA
* * *
16066547 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCACATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
16066609 ATAAAT
65 ATAAAT
* *
16066615 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCACATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
*
16066680 GTAAAT
65 ATAAAT
* *
16066686 GTAGCTAGGTCACATGCATGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCACATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
16066745 AGACAAATCG
Statistics
Matches: 118, Mismatches: 8, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.03
70 1 0.01
71 90 0.76
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCACATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:16066670 original size:71 final size:71
Alignment explanation
Indices: 16066581--16066744 Score: 301
Period size: 71 Copynumber: 2.3 Consensus size: 71
16066571 GAGATGTATC
* *
16066581 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCACATGCATGATTCCAAGTGA
16066646 AGGACA
66 AGGACA
*
16066652 CCATGTAGACAAGAGAGCTACGTGAAAGGTAAATGTAGCTAGGTCACATGCATGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCACATGCATGATTCCAAGTGA
16066717 AGGACA
66 AGGACA
16066723 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
16066745 AGACAAATCG
Statistics
Matches: 90, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
71 90 1.00
ACGTcount: A:0.36, C:0.18, G:0.27, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCACATGCATGATTCCAAGTGA
AGGACA
Found at i:16067906 original size:23 final size:23
Alignment explanation
Indices: 16067871--16068002 Score: 110
Period size: 23 Copynumber: 5.8 Consensus size: 23
16067861 CCGATATATC
*
16067871 AGCTCATAAGAGCTTACTATTTT
1 AGCTCATTAGAGCTTACTATTTT
* ** *
16067894 AGCTCATTGGAGCTTACCGTTTC
1 AGCTCATTAGAGCTTACTATTTT
*
16067917 AGCTC-GTATGAGCTTACTA-TTT
1 AGCTCATTA-GAGCTTACTATTTT
*
16067939 AGCTCGA-TAGAGCTTA-TAGTTTC
1 AGCTC-ATTAGAGCTTACTA-TTTT
* * *
16067962 AGCTTAATAGAGCTTACTAATTT
1 AGCTCATTAGAGCTTACTATTTT
*
16067985 AGCTCAATAGAGCTTACT
1 AGCTCATTAGAGCTTACT
16068003 GTTCTTCAGC
Statistics
Matches: 87, Mismatches: 15, Indels: 14
0.75 0.13 0.12
Matches are distributed among these distances:
21 2 0.02
22 16 0.18
23 67 0.77
24 2 0.02
ACGTcount: A:0.27, C:0.19, G:0.17, T:0.36
Consensus pattern (23 bp):
AGCTCATTAGAGCTTACTATTTT
Found at i:16067934 original size:46 final size:43
Alignment explanation
Indices: 16067844--16068001 Score: 147
Period size: 46 Copynumber: 3.4 Consensus size: 43
16067834 GGACTCACCA
* *
16067844 TAGCTCGTAAGAGCTTACCGATATATCAGCTCATAAGAGCTTACTATTT
1 TAGCTCAT-AGAGCTTACCG-T-T-TCAGCTC-TATGAGCTTACTA-TT
*
16067893 TAGCTCATTGGAGCTTACCGTTTCAGCTCGTATGAGCTTACTATT
1 TAGCTCA-TAGAGCTTACCGTTTCAGCTC-TATGAGCTTACTATT
**
16067938 TAGCTCGATAGAGCTTATAGTTTCAGCT-TAATAGAGCTTACTAATT
1 TAGCTC-ATAGAGCTTACCGTTTCAGCTCT-AT-GAGCTTACT-ATT
16067984 TAGCTCAATAGAGCTTAC
1 TAGCTC-ATAGAGCTTAC
16068002 TGTTCTTCAG
Statistics
Matches: 95, Mismatches: 9, Indels: 13
0.81 0.08 0.11
Matches are distributed among these distances:
43 1 0.01
44 2 0.02
45 34 0.36
46 39 0.41
47 1 0.01
48 1 0.01
49 16 0.17
50 1 0.01
ACGTcount: A:0.28, C:0.20, G:0.18, T:0.35
Consensus pattern (43 bp):
TAGCTCATAGAGCTTACCGTTTCAGCTCTATGAGCTTACTATT
Found at i:16070747 original size:40 final size:40
Alignment explanation
Indices: 16070692--16070920 Score: 293
Period size: 40 Copynumber: 5.7 Consensus size: 40
16070682 CCGGGCAAGT
*
16070692 AGTTGCTATA-CCGGGCTAAGTCCCGAAGGCATTTGTGCA
1 AGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCA
16070731 AGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGA
1 AGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-A
* * *
16070772 GTAGTTGCTATACCCGGGCTAAGT-CCGAAGGCATTTGTGCT
1 --AGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCA
* ** *
16070813 AGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCATGCT
1 AGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCA
* * *
16070853 AGTGACTATATCCGGGCTAAGACCCGAAGGCATTTGTGCG
1 AGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCA
* *
16070893 AGTTGCTATATCC-GGCTAAATCCCGAAG
1 AGTTACTATATCCGGGCTAAGTCCCGAAG
16070921 ATACTTGGGT
Statistics
Matches: 168, Mismatches: 17, Indels: 10
0.86 0.09 0.05
Matches are distributed among these distances:
39 41 0.24
40 90 0.54
41 1 0.01
42 16 0.10
43 20 0.12
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
AGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCA
Found at i:16070800 original size:82 final size:80
Alignment explanation
Indices: 16070689--16070920 Score: 310
Period size: 82 Copynumber: 2.9 Consensus size: 80
16070679 TATCCGGGCA
16070689 AGTAGTTGCTATACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAGTC
1 AGTAGTTGCTATACCGGGCTAAGT-CCGAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAGTC
**
16070754 CCGAAGGCATTTGTGC
65 CCGAAGGCATTCATGC
* *
16070770 GAGTAGTTGCTATACCCGGGCTAAGTCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGT
1 -AGTAGTTGCTATA-CCGGGCTAAGTCCGAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAGT
16070835 CCCGAAGGCATTCATGC
64 CCCGAAGGCATTCATGC
* * * *
16070852 --TAG-TGACTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCC-GGCTAAA
1 AGTAGTTG-CTATA-CCGGGCTAAG-TCCGAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAG
16070913 TCCCGAAG
63 TCCCGAAG
16070921 ATACTTGGGT
Statistics
Matches: 137, Mismatches: 10, Indels: 9
0.88 0.06 0.06
Matches are distributed among these distances:
78 2 0.01
79 32 0.23
80 27 0.20
82 65 0.47
83 11 0.08
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (80 bp):
AGTAGTTGCTATACCGGGCTAAGTCCGAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAGTCC
CGAAGGCATTCATGC
Found at i:16078699 original size:40 final size:40
Alignment explanation
Indices: 16078603--16078880 Score: 335
Period size: 40 Copynumber: 6.8 Consensus size: 40
16078593 TATTCGGATG
* *
16078603 ATATCCGGGCTAAGTCTCGAAGGCATTTGTGCAAGTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGT-G--ACT
*
16078646 ATA-CCTGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCC-GGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACT
16078686 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-A--AG-TGACT
* * *
16078729 ATACCCGGGCTAAGTCCTGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACT
* ** *
16078769 ATATCCGGGCTAAGTCCCAAAGGCATTCATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACT
* ** *
16078809 ATATCCGGGCTAAGACCCGAAGGCATTCATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACT
*
16078849 ATATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC
16078881 GATGCTATAT
Statistics
Matches: 212, Mismatches: 16, Indels: 17
0.87 0.07 0.07
Matches are distributed among these distances:
39 2 0.01
40 138 0.65
41 3 0.01
42 2 0.01
43 66 0.31
44 1 0.00
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACT
Found at i:16078742 original size:83 final size:83
Alignment explanation
Indices: 16078603--16078882 Score: 397
Period size: 83 Copynumber: 3.4 Consensus size: 83
16078593 TATTCGGATG
* * *
16078603 ATATCCGGGCTAAGTCTCGAAGGCATTTGTGCAAGTAGTTGCTATACCTGGGCTAAGTCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCTATACCCGGGCTAAGTCCCGAAG
* *
16078668 GCATTTGTGCAAGTTACT
66 GCATTTGTGCTAGTGACT
*
16078686 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCTATACCCGGGCTAAGTCCTGAAG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCTATACCCGGGCTAAGTCCCGAAG
16078751 GCATTTGTGCTAGTGACT
66 GCATTTGTGCTAGTGACT
* ** * *
16078769 ATATCCGGGCTAAGTCCCAAAGGCATTCATGC---TAG-TGACTATATCCGGGCTAAGACCCGAA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTG-CTATACCCGGGCTAAGTCCCGAA
**
16078830 GGCATTCATGCTAGTGACT
65 GGCATTTGTGCTAGTGACT
*
16078849 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGA
16078883 TGCTATATCG
Statistics
Matches: 176, Mismatches: 18, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
79 2 0.01
80 68 0.39
83 106 0.60
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.26
Consensus pattern (83 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCTATACCCGGGCTAAGTCCCGAAG
GCATTTGTGCTAGTGACT
Found at i:16080770 original size:38 final size:38
Alignment explanation
Indices: 16080710--16080786 Score: 118
Period size: 38 Copynumber: 2.0 Consensus size: 38
16080700 AAGTTAGTAT
* * *
16080710 TTATGCCCTATTTTCACGCGGTCTAAGACATGGGCGTG
1 TTATGCCCTATTCTCACACGGTCTAAGACAAGGGCGTG
*
16080748 TTATGCCTTATTCTCACACGGTCTAAGACAAGGGCGTG
1 TTATGCCCTATTCTCACACGGTCTAAGACAAGGGCGTG
16080786 T
1 T
16080787 CTACTAGCCG
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
38 35 1.00
ACGTcount: A:0.21, C:0.23, G:0.25, T:0.31
Consensus pattern (38 bp):
TTATGCCCTATTCTCACACGGTCTAAGACAAGGGCGTG
Found at i:16083283 original size:16 final size:16
Alignment explanation
Indices: 16083262--16083293 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
16083252 CTCTAGCCGA
16083262 ATCTCATTTGGTTTCT
1 ATCTCATTTGGTTTCT
16083278 ATCTCATTTGGTTTCT
1 ATCTCATTTGGTTTCT
16083294 TTCCCTAGGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.12, C:0.19, G:0.12, T:0.56
Consensus pattern (16 bp):
ATCTCATTTGGTTTCT
Found at i:16097754 original size:4 final size:4
Alignment explanation
Indices: 16097745--16097773 Score: 58
Period size: 4 Copynumber: 7.2 Consensus size: 4
16097735 TTCATGAATC
16097745 ATAA ATAA ATAA ATAA ATAA ATAA ATAA A
1 ATAA ATAA ATAA ATAA ATAA ATAA ATAA A
16097774 ATCACATCTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (4 bp):
ATAA
Found at i:16099439 original size:40 final size:39
Alignment explanation
Indices: 16099328--16099478 Score: 151
Period size: 40 Copynumber: 3.8 Consensus size: 39
16099318 TATAATCAGT
* * *
16099328 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATAACAACTA
* *
16099368 GCACGAATGCCTTCGGGTCTTAGCCCGGATATAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATAACAACTA
* *** *
16099408 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATATAACAACTA
* *
16099448 GCATAATTGTCTTCGGG-CTTAGCCCGGATAT
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATAT
16099479 CATTCAATTT
Statistics
Matches: 95, Mismatches: 15, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
39 15 0.16
40 80 0.84
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (39 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATATAACAACTA
Found at i:16099462 original size:80 final size:79
Alignment explanation
Indices: 16099328--16099478 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 79
16099318 TATAATCAGT
*
16099328 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGG-CTTAGCC
16099393 CGGATATAGCCACTA
65 CGGATATAGCCACTA
* * ** * *
16099408 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
16099471 CCGGATAT
64 CCGGATAT
16099479 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
79 17 0.27
80 45 0.73
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Found at i:16100323 original size:17 final size:19
Alignment explanation
Indices: 16100300--16100345 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
16100290 AAGAAGCATG
16100300 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
16100318 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
16100336 AATCATGCTC
1 AATCATGCTC
16100346 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:16107358 original size:39 final size:40
Alignment explanation
Indices: 16107314--16107479 Score: 174
Period size: 40 Copynumber: 4.2 Consensus size: 40
16107304 CGGAATATAA
*
16107314 CCGGATATAATCAGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * * *
16107353 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
16107393 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
16107433 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
16107472 CCGGATAT
1 CCGGATAT
16107480 CATTCAATTT
Statistics
Matches: 104, Mismatches: 22, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
39 25 0.24
40 79 0.76
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:16108325 original size:17 final size:19
Alignment explanation
Indices: 16108302--16108347 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
16108292 AAGAAGCATG
16108302 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
16108320 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
16108338 AATCATGCTC
1 AATCATGCTC
16108348 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:16116523 original size:96 final size:96
Alignment explanation
Indices: 16116359--16116552 Score: 300
Period size: 96 Copynumber: 2.0 Consensus size: 96
16116349 TCACTTCTTT
* * * *
16116359 TTGTTCCTCTTTGCCCTCTTGGCTTCGATTTTTCCCTTGCTTGAACCAAGCTTCTTGGGCTTCTT
1 TTGTTCCTCTTTGCCCTCTTGGCTTCGACTTTTCCCTTGCTCGAACCAAGCTTCTTAGGCTCCTT
*
16116424 GTCTACTCCATCATTCCCTTTGATGACAGAC
66 GTCTACTCCATCATTCCCATTGATGACAGAC
16116455 TTGTTCCTCTTTGCCCTCTTGGCTTC-AGCTTTTCCCTTGCTCGAACCAAGCTTCTTAGGCTCCT
1 TTGTTCCTCTTTGCCCTCTTGGCTTCGA-CTTTTCCCTTGCTCGAACCAAGCTTCTTAGGCTCCT
* * *
16116519 TGTCTGCTCCATCGTTTCCATTGATGACAGAC
65 TGTCTACTCCATCATTCCCATTGATGACAGAC
16116551 TT
1 TT
16116553 CCTCGGGCAC
Statistics
Matches: 89, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
95 1 0.01
96 88 0.99
ACGTcount: A:0.12, C:0.31, G:0.16, T:0.41
Consensus pattern (96 bp):
TTGTTCCTCTTTGCCCTCTTGGCTTCGACTTTTCCCTTGCTCGAACCAAGCTTCTTAGGCTCCTT
GTCTACTCCATCATTCCCATTGATGACAGAC
Found at i:16129685 original size:40 final size:40
Alignment explanation
Indices: 16129626--16129756 Score: 172
Period size: 40 Copynumber: 3.3 Consensus size: 40
16129616 CGGGACTTTA
* * *
16129626 CCCGGATATCACGATTTGCACAAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* *
16129666 CCCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * * * *
16129706 CCCGGATATAGCTACTAGCACAATTGCCTTCGGGTCTTAA
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
16129746 CCCGGATATAA
1 CCCGGATATAA
16129757 ATTTCAGCAT
Statistics
Matches: 78, Mismatches: 13, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 78 1.00
ACGTcount: A:0.24, C:0.27, G:0.21, T:0.27
Consensus pattern (40 bp):
CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
Found at i:16129771 original size:40 final size:40
Alignment explanation
Indices: 16129643--16129793 Score: 164
Period size: 40 Copynumber: 3.8 Consensus size: 40
16129633 ATCACGATTT
* * * *
16129643 GCACAAATGCCTTCGGGTCTTAGCCCGGATTTAACAACTT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACTACTA
*
16129683 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAGCTACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAACTACTA
* * *
16129723 GCACAATTGCCTTCGGGTCTTAACCCGGATATAAAT-TTCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACTACT-A
* **
16129763 GCATAATTGTATTCGGG-CTTAGCCCGGATAT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
16129794 CATTCAATTT
Statistics
Matches: 96, Mismatches: 12, Indels: 7
0.83 0.10 0.06
Matches are distributed among these distances:
39 16 0.17
40 78 0.81
41 2 0.02
ACGTcount: A:0.25, C:0.25, G:0.22, T:0.28
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACTACTA
Found at i:16134906 original size:37 final size:35
Alignment explanation
Indices: 16134840--16134914 Score: 82
Period size: 37 Copynumber: 2.1 Consensus size: 35
16134830 TGTTGTGCCG
*
16134840 TTTTTTTCTTTTCTGACCATTCTTCCTTCTCTCATTC
1 TTTTTTTCTTTTCTCACCATTCTTCCTTCT-TC-TTC
*
16134877 TTTTTTTCTTTTTCTCTCCA-TC-TCTCTTCTTCTTC
1 TTTTTTTC-TTTTCTCACCATTCTTC-CTTCTTCTTC
16134912 TTT
1 TTT
16134915 CCCCATAGCG
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
35 6 0.18
36 4 0.12
37 15 0.44
38 9 0.26
ACGTcount: A:0.05, C:0.29, G:0.01, T:0.64
Consensus pattern (35 bp):
TTTTTTTCTTTTCTCACCATTCTTCCTTCTTCTTC
Found at i:16135980 original size:28 final size:27
Alignment explanation
Indices: 16135940--16136003 Score: 110
Period size: 28 Copynumber: 2.3 Consensus size: 27
16135930 ATGTACTAGA
*
16135940 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATGACC-TT
16135968 ATACCCCTATGTATGCAAAATGACCTT
1 ATACCCCTATGTATGCAAAATGACCTT
16135995 ATACCCCTA
1 ATACCCCTA
16136004 GGGTTAATTT
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
27 11 0.31
28 24 0.69
ACGTcount: A:0.34, C:0.28, G:0.08, T:0.30
Consensus pattern (27 bp):
ATACCCCTATGTATGCAAAATGACCTT
Found at i:16136174 original size:27 final size:27
Alignment explanation
Indices: 16136109--16136196 Score: 101
Period size: 26 Copynumber: 3.2 Consensus size: 27
16136099 AGGAAGCGTC
16136109 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAA-TATCTGTT
* *
16136137 C--GTGGCCCTGCCACATATATCTGTT
1 CTGGTGGCACTGCCACAAATATCTGTT
16136162 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCAC-AAATATCTGT-T
16136191 CTGGTG
1 CTGGTG
16136197 ACTCTGTCAC
Statistics
Matches: 51, Mismatches: 4, Indels: 9
0.80 0.06 0.14
Matches are distributed among these distances:
25 9 0.18
26 13 0.25
27 12 0.24
28 10 0.20
29 7 0.14
ACGTcount: A:0.20, C:0.25, G:0.23, T:0.32
Consensus pattern (27 bp):
CTGGTGGCACTGCCACAAATATCTGTT
Found at i:16136207 original size:29 final size:28
Alignment explanation
Indices: 16136119--16136207 Score: 85
Period size: 29 Copynumber: 3.2 Consensus size: 28
16136109 CTGGTGGCTA
* * *
16136119 TGCCACAAATTATCTGTTC--GTGGCCC
1 TGCCACAAAATATCTGTTCTGGTGACAC
* *
16136145 TGCCAC-ATATATCTGTTCTGGTGGCAC
1 TGCCACAAAATATCTGTTCTGGTGACAC
*
16136172 TGCCACAAAATATCTGTATCTGGTGACTC
1 TGCCACAAAATATCTGT-TCTGGTGACAC
*
16136201 TGTCACA
1 TGCCACA
16136208 TTTTCTGTAT
Statistics
Matches: 52, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
25 10 0.19
26 6 0.12
27 12 0.23
28 9 0.17
29 15 0.29
ACGTcount: A:0.22, C:0.27, G:0.19, T:0.31
Consensus pattern (28 bp):
TGCCACAAAATATCTGTTCTGGTGACAC
Found at i:16143798 original size:28 final size:28
Alignment explanation
Indices: 16143758--16143822 Score: 112
Period size: 28 Copynumber: 2.3 Consensus size: 28
16143748 ATGTACTAGA
*
16143758 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATGACCATT
*
16143786 ATACCCCTATGTATGCAAAATGACCTTT
1 ATACCCCTATGTATGCAAAATGACCATT
16143814 ATACCCCTA
1 ATACCCCTA
16143823 GGGTTAATTT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.34, C:0.28, G:0.08, T:0.31
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATGACCATT
Found at i:16143986 original size:27 final size:27
Alignment explanation
Indices: 16143928--16144017 Score: 119
Period size: 28 Copynumber: 3.2 Consensus size: 27
16143918 AGGAAGCGTC
16143928 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAA-TATCTGTT
* *
16143956 CTGGTGGCCCTGCCACATATATCTGTT
1 CTGGTGGCACTGCCACAAATATCTGTT
16143983 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCAC-AAATATCTGT-T
16144012 CTGGTG
1 CTGGTG
16144018 ACTCTGTCAC
Statistics
Matches: 55, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
27 23 0.42
28 25 0.45
29 7 0.13
ACGTcount: A:0.20, C:0.24, G:0.23, T:0.32
Consensus pattern (27 bp):
CTGGTGGCACTGCCACAAATATCTGTT
Found at i:16144036 original size:55 final size:56
Alignment explanation
Indices: 16143928--16144042 Score: 146
Period size: 55 Copynumber: 2.1 Consensus size: 56
16143918 AGGAAGCGTC
* *
16143928 CTGGTGGCTATGCCACAAATTATCTGTTCTGGTGGCCCTGCCACATATATCTGT-T
1 CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTAT
* * *
16143983 CTGGTGGC-ACTGCCACAAAATATCTGTATCTGGTGACTCTGTCACAT-TTTCTGTAT
1 CTGGTGGCTA-TGCCACAAAATATCTGT-TCTGGTGACCCTGCCACATATATCTGTAT
16144039 CTGG
1 CTGG
16144043 CAGCCATGCT
Statistics
Matches: 52, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
54 1 0.02
55 30 0.58
56 21 0.40
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.35
Consensus pattern (56 bp):
CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTAT
Found at i:16144862 original size:22 final size:21
Alignment explanation
Indices: 16144832--16144895 Score: 60
Period size: 19 Copynumber: 3.1 Consensus size: 21
16144822 TACAAATTAA
16144832 ATCTCCAAGATTACGAGATCAT
1 ATCTCCAAGATTAC-AGATCAT
* * *
16144854 ATCTTCAAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
* *
16144875 ATCT--AAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
16144894 AT
1 AT
16144896 GTGTCATATC
Statistics
Matches: 39, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
19 17 0.44
21 10 0.26
22 12 0.31
ACGTcount: A:0.36, C:0.19, G:0.11, T:0.34
Consensus pattern (21 bp):
ATCTCCAAGATTACAGATCAT
Found at i:16144884 original size:19 final size:21
Alignment explanation
Indices: 16144849--16144895 Score: 80
Period size: 19 Copynumber: 2.3 Consensus size: 21
16144839 AGATTACGAG
16144849 ATCATATCTTCAAGATTGCAT
1 ATCATATCTTCAAGATTGCAT
16144870 ATCATATC-T-AAGATTGCAT
1 ATCATATCTTCAAGATTGCAT
16144889 ATCATAT
1 ATCATAT
16144896 GTGTCATATC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
19 17 0.65
20 1 0.04
21 8 0.31
ACGTcount: A:0.36, C:0.17, G:0.09, T:0.38
Consensus pattern (21 bp):
ATCATATCTTCAAGATTGCAT
Found at i:16144891 original size:14 final size:14
Alignment explanation
Indices: 16144872--16144919 Score: 55
Period size: 14 Copynumber: 3.4 Consensus size: 14
16144862 GATTGCATAT
16144872 CATATCTAAGATTG
1 CATATCTAAGATTG
*
16144886 CATATC--ATATGTG
1 CATATCTAAGAT-TG
16144899 TCATATCTAAGATTG
1 -CATATCTAAGATTG
16144914 CATATC
1 CATATC
16144920 CTTAAAGATT
Statistics
Matches: 28, Mismatches: 2, Indels: 8
0.74 0.05 0.21
Matches are distributed among these distances:
12 3 0.11
13 2 0.07
14 18 0.64
15 2 0.07
16 3 0.11
ACGTcount: A:0.33, C:0.17, G:0.12, T:0.38
Consensus pattern (14 bp):
CATATCTAAGATTG
Found at i:16145722 original size:27 final size:27
Alignment explanation
Indices: 16145687--16145741 Score: 92
Period size: 27 Copynumber: 2.0 Consensus size: 27
16145677 CAAATATCTT
*
16145687 TATACTTAAATTATAAGTAATTAAGTA
1 TATACTTAAATTACAAGTAATTAAGTA
*
16145714 TATATTTAAATTACAAGTAATTAAGTA
1 TATACTTAAATTACAAGTAATTAAGTA
16145741 T
1 T
16145742 TTAAATTACA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.47, C:0.04, G:0.07, T:0.42
Consensus pattern (27 bp):
TATACTTAAATTACAAGTAATTAAGTA
Found at i:16145746 original size:23 final size:24
Alignment explanation
Indices: 16145692--16145752 Score: 79
Period size: 27 Copynumber: 2.5 Consensus size: 24
16145682 ATCTTTATAC
*
16145692 TTAAATTATAAGTAATTAAGTATATAT
1 TTAAATTACAAGTAATTAAG---ATAT
16145719 TTAAATTACAAGTAATTAAG-TAT
1 TTAAATTACAAGTAATTAAGATAT
16145742 TTAAATTACAA
1 TTAAATTACAA
16145753 ATGTACCAAT
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
23 14 0.42
27 19 0.58
ACGTcount: A:0.49, C:0.03, G:0.07, T:0.41
Consensus pattern (24 bp):
TTAAATTACAAGTAATTAAGATAT
Found at i:16146982 original size:58 final size:57
Alignment explanation
Indices: 16146905--16147044 Score: 142
Period size: 57 Copynumber: 2.4 Consensus size: 57
16146895 TTATAGATAG
* * * * *
16146905 GATTTAG-CTCAGACGGGTAATCCTGATATAATC-CTTCTAGAGCATATGTTTCA-ATTAC
1 GATTTAGCCT-AGACTGGTAATCCTGAT-TAAGCTCTTCTA-AGCATATATTACATA-AAC
* * * *
16146963 GATTTAGCCTGGACTGGTAATCCTAATTGAGCTCTTCTAAGCATATATTACATAAAG
1 GATTTAGCCTAGACTGGTAATCCTGATTAAGCTCTTCTAAGCATATATTACATAAAC
16147020 GATTTAGCCTAGACTGGTAATCCTG
1 GATTTAGCCTAGACTGGTAATCCTG
16147045 TAATGATGAT
Statistics
Matches: 68, Mismatches: 11, Indels: 7
0.79 0.13 0.08
Matches are distributed among these distances:
57 38 0.56
58 28 0.41
59 2 0.03
ACGTcount: A:0.29, C:0.19, G:0.19, T:0.34
Consensus pattern (57 bp):
GATTTAGCCTAGACTGGTAATCCTGATTAAGCTCTTCTAAGCATATATTACATAAAC
Found at i:16153496 original size:50 final size:51
Alignment explanation
Indices: 16153413--16153534 Score: 138
Period size: 50 Copynumber: 2.4 Consensus size: 51
16153403 TTAGGTCACG
* * * ** * *
16153413 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAT-GGTTTGGTCAAA
1 TGTGTAGTAATAAGTGTAGGCTACTACGCGTACCAGATAACTTCGATCAAA
* * *
16153463 TGTGTAGTAATAAGTGTAGGCTACTATGCGTACCCGATAACTTCGATCACA
1 TGTGTAGTAATAAGTGTAGGCTACTACGCGTACCAGATAACTTCGATCAAA
*
16153514 TGTGTAGTATTAAGTGTAGGC
1 TGTGTAGTAATAAGTGTAGGC
16153535 CAATATGTGT
Statistics
Matches: 60, Mismatches: 11, Indels: 1
0.83 0.15 0.01
Matches are distributed among these distances:
50 33 0.55
51 27 0.45
ACGTcount: A:0.27, C:0.16, G:0.26, T:0.31
Consensus pattern (51 bp):
TGTGTAGTAATAAGTGTAGGCTACTACGCGTACCAGATAACTTCGATCAAA
Found at i:16164221 original size:25 final size:25
Alignment explanation
Indices: 16164193--16164267 Score: 77
Period size: 25 Copynumber: 3.2 Consensus size: 25
16164183 ATTTACCGAG
16164193 TGATTAGATGCATGTGTTAGAGTAT
1 TGATTAGATGCATGTGTTAGAGTAT
* * * * *
16164218 TGATAAGA--AAT-T-TTATAGAAG
1 TGATTAGATGCATGTGTTAGAGTAT
16164239 TGATTAGATGCATGTGTTAGAGTAT
1 TGATTAGATGCATGTGTTAGAGTAT
16164264 TGAT
1 TGAT
16164268 AAGAAATTTT
Statistics
Matches: 36, Mismatches: 10, Indels: 8
0.67 0.19 0.15
Matches are distributed among these distances:
21 13 0.36
22 1 0.03
23 4 0.11
24 1 0.03
25 17 0.47
ACGTcount: A:0.33, C:0.03, G:0.25, T:0.39
Consensus pattern (25 bp):
TGATTAGATGCATGTGTTAGAGTAT
Found at i:16164258 original size:46 final size:46
Alignment explanation
Indices: 16164191--16164282 Score: 184
Period size: 46 Copynumber: 2.0 Consensus size: 46
16164181 TGATTTACCG
16164191 AGTGATTAGATGCATGTGTTAGAGTATTGATAAGAAATTTTATAGA
1 AGTGATTAGATGCATGTGTTAGAGTATTGATAAGAAATTTTATAGA
16164237 AGTGATTAGATGCATGTGTTAGAGTATTGATAAGAAATTTTATAGA
1 AGTGATTAGATGCATGTGTTAGAGTATTGATAAGAAATTTTATAGA
16164283 TTGCATGTTT
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 46 1.00
ACGTcount: A:0.37, C:0.02, G:0.24, T:0.37
Consensus pattern (46 bp):
AGTGATTAGATGCATGTGTTAGAGTATTGATAAGAAATTTTATAGA
Found at i:16167917 original size:28 final size:28
Alignment explanation
Indices: 16167846--16167923 Score: 113
Period size: 28 Copynumber: 2.8 Consensus size: 28
16167836 AATCATTCGC
* * *
16167846 TATTTCGCACACTAAATGCCATTCTTAA
1 TATTTCGCACACTAAGTGTCATTCTCAA
16167874 T-TTATCGCACACTAAGTGTCATTCTCAA
1 TATT-TCGCACACTAAGTGTCATTCTCAA
16167902 TATTTCGCACACTAAGTGTCAT
1 TATTTCGCACACTAAGTGTCAT
16167924 ATTTGATACC
Statistics
Matches: 45, Mismatches: 3, Indels: 4
0.87 0.06 0.08
Matches are distributed among these distances:
27 2 0.04
28 41 0.91
29 2 0.04
ACGTcount: A:0.29, C:0.24, G:0.10, T:0.36
Consensus pattern (28 bp):
TATTTCGCACACTAAGTGTCATTCTCAA
Found at i:16170352 original size:28 final size:28
Alignment explanation
Indices: 16170283--16170383 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
16170273 GTGACAATTG
* * * *
16170283 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
16170313 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
16170341 GCACTAAGTGTGCGAG-CTGAATGTATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
16170370 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
16170384 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 2 0.03
28 24 0.38
29 20 0.31
30 18 0.28
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:16170377 original size:29 final size:28
Alignment explanation
Indices: 16170312--16170383 Score: 110
Period size: 29 Copynumber: 2.5 Consensus size: 28
16170302 AAAATTGTAC
*
16170312 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTCTGATTATAT
16170340 AGCACTAAGTGTGCGAG-CTGAATGTATAT
1 AGCACTAAGTGTGCGAGTCTG-AT-TATAT
16170369 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
16170384 GATTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
27 2 0.05
28 19 0.46
29 20 0.49
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTCTGATTATAT
Found at i:16178408 original size:28 final size:28
Alignment explanation
Indices: 16178339--16178439 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
16178329 GACAAGATTG
* * * *
16178339 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
16178369 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
16178397 GCACTAAGTGTGCGAG-CTGAATGTATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
16178426 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
16178440 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 2 0.03
28 24 0.38
29 20 0.31
30 18 0.28
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:16178433 original size:29 final size:28
Alignment explanation
Indices: 16178368--16178439 Score: 110
Period size: 29 Copynumber: 2.5 Consensus size: 28
16178358 AAAATTGTAC
*
16178368 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTCTGATTATAT
16178396 AGCACTAAGTGTGCGAG-CTGAATGTATAT
1 AGCACTAAGTGTGCGAGTCTG-AT-TATAT
16178425 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
16178440 GATTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
27 2 0.05
28 19 0.46
29 20 0.49
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTCTGATTATAT
Found at i:16181420 original size:58 final size:57
Alignment explanation
Indices: 16181272--16181420 Score: 142
Period size: 57 Copynumber: 2.6 Consensus size: 57
16181262 TCATATAATA
*
16181272 GGATTACCAGTCCAGGCTAAATCCTTTATATAACGTATGCTCACAAGAGCTTAATTAG
1 GGATTACCAGTCCAGGCTAAATCCTTTTTATAACGTATGCT-ACAAGAGCTTAATTAG
* * ** * * * * * *
16181330 GG-TTACCAGTCCAAGCTAAACCCTAATCATAACGTGTGCT-CGAGAGGTATTATATCG
1 GGATTACCAGTCCAGGCTAAATCCTTTTTATAACGTATGCTACAAGAGCT-TAAT-TAG
16181387 GGATTACCCA-TCCAGGCTAAATCCTTTTTATAAC
1 GGATTA-CCAGTCCAGGCTAAATCCTTTTTATAAC
16181421 AAGGTCATTG
Statistics
Matches: 71, Mismatches: 16, Indels: 8
0.75 0.17 0.08
Matches are distributed among these distances:
55 6 0.08
56 3 0.04
57 35 0.49
58 24 0.34
59 3 0.04
ACGTcount: A:0.31, C:0.23, G:0.17, T:0.29
Consensus pattern (57 bp):
GGATTACCAGTCCAGGCTAAATCCTTTTTATAACGTATGCTACAAGAGCTTAATTAG
Found at i:16182824 original size:43 final size:43
Alignment explanation
Indices: 16182763--16182847 Score: 134
Period size: 43 Copynumber: 2.0 Consensus size: 43
16182753 CAGCTAAAGC
*
16182763 TAGTGGCATTTGTGGTAAAAGTGCCGCTAAAGGTCATGTTCTT
1 TAGTGGCATTTGTGGTAAAAGTGCCACTAAAGGTCATGTTCTT
* * *
16182806 TAGTGGTATTTTTGGTAAAAGTGTCACTAAAGGTCATGTTCT
1 TAGTGGCATTTGTGGTAAAAGTGCCACTAAAGGTCATGTTCT
16182848 ATATCGGCGC
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 38 1.00
ACGTcount: A:0.25, C:0.12, G:0.26, T:0.38
Consensus pattern (43 bp):
TAGTGGCATTTGTGGTAAAAGTGCCACTAAAGGTCATGTTCTT
Found at i:16187716 original size:2 final size:2
Alignment explanation
Indices: 16187709--16187736 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
16187699 GGGCTTTGTA
16187709 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
16187737 CACCTTCCTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:16189705 original size:40 final size:40
Alignment explanation
Indices: 16189597--16189706 Score: 148
Period size: 40 Copynumber: 2.8 Consensus size: 40
16189587 ATTGAATGAT
* * * * *
16189597 ATCCGGGCTAAGTCCCGAAGACATTTATGCTGGTAATTAC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAACTAC
* * *
16189637 ATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTAC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAACTAC
16189677 ATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGC
16189707 AAATTGTGAA
Statistics
Matches: 60, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 60 1.00
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAACTAC
Found at i:16189721 original size:40 final size:39
Alignment explanation
Indices: 16189597--16189746 Score: 133
Period size: 40 Copynumber: 3.8 Consensus size: 39
16189587 ATTGAATGAT
* * * * * * *
16189597 ATCCGGGCTAAGTCCCGAAGACATTTATGCTGGTAATTAC
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGA-CAC
*
16189637 ATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTAC
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGAC-AC
* *
16189677 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATTGTGA-A-
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGC---TAGTGACAC
* *
16189717 ATCCGGGTTAAGTCCCGAAGGCCTTTGTGC
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGC
16189747 GGGTTACCAT
Statistics
Matches: 92, Mismatches: 14, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
40 86 0.93
41 1 0.01
43 5 0.05
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.25
Consensus pattern (39 bp):
ATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGACAC
Found at i:16196482 original size:65 final size:66
Alignment explanation
Indices: 16196406--16196559 Score: 204
Period size: 65 Copynumber: 2.3 Consensus size: 66
16196396 TGAGCCACAT
* ** * *
16196406 CAGGACGCTCACAAAGAGCTGCGTTTGTGTCTACAATGTATGCAGG-ATCACAATTGATCGCAT-
1 CAGGACGCTCACAAAGAGCTGCGTTTGTGTCCACAACATATGCAGGAATCACAATCGATC-AATA
16196469 AA
65 AA
* **
16196471 CAGGACGCTCACACAGAGCTGTATTTGTGTCCACAACATATGCAGGAATCACAATCGATCAATAA
1 CAGGACGCTCACAAAGAGCTGCGTTTGTGTCCACAACATATGCAGGAATCACAATCGATCAATAA
16196536 A
66 A
*
16196537 CAGGACGCTCATAAAGAGCTGCG
1 CAGGACGCTCACAAAGAGCTGCG
16196560 GTAGAGTGCA
Statistics
Matches: 75, Mismatches: 12, Indels: 3
0.83 0.13 0.03
Matches are distributed among these distances:
65 42 0.56
66 33 0.44
ACGTcount: A:0.33, C:0.23, G:0.22, T:0.21
Consensus pattern (66 bp):
CAGGACGCTCACAAAGAGCTGCGTTTGTGTCCACAACATATGCAGGAATCACAATCGATCAATAA
A
Found at i:16197733 original size:28 final size:30
Alignment explanation
Indices: 16197692--16197753 Score: 110
Period size: 28 Copynumber: 2.1 Consensus size: 30
16197682 CCTTTATATT
16197692 TTTCGTTTCTTTCACTTCACATG-CCAAAA
1 TTTCGTTTCTTTCACTTCACATGCCCAAAA
16197721 TTTC-TTTCTTTCACTTCACATGCCCAAAA
1 TTTCGTTTCTTTCACTTCACATGCCCAAAA
16197750 TTTC
1 TTTC
16197754 ATTCAGTCAC
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
28 18 0.56
29 14 0.44
ACGTcount: A:0.23, C:0.29, G:0.05, T:0.44
Consensus pattern (30 bp):
TTTCGTTTCTTTCACTTCACATGCCCAAAA
Found at i:16197763 original size:29 final size:28
Alignment explanation
Indices: 16197703--16197764 Score: 88
Period size: 29 Copynumber: 2.2 Consensus size: 28
16197693 TTCGTTTCTT
* **
16197703 TCACTTCACATGCCAAAATTTCTTTCTT
1 TCACTTCACATGCCAAAATTTCATTCAG
16197731 TCACTTCACATGCCCAAAATTTCATTCAG
1 TCACTTCACATG-CCAAAATTTCATTCAG
16197760 TCACT
1 TCACT
16197765 CATTGTAAGT
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
28 12 0.40
29 18 0.60
ACGTcount: A:0.27, C:0.31, G:0.05, T:0.37
Consensus pattern (28 bp):
TCACTTCACATGCCAAAATTTCATTCAG
Found at i:16200521 original size:42 final size:44
Alignment explanation
Indices: 16200439--16200540 Score: 109
Period size: 44 Copynumber: 2.4 Consensus size: 44
16200429 AGCTGTATCA
* * *
16200439 ATCTCACACACTAAGTGACAATATATATAGCTGAAGCTATCTTG
1 ATCTCACACACTAAGTCACAATATATATAGCTGAAACTATCTCG
** *
16200483 ATCTCACACACTAAGTCTTAATATATA-ATC-GAAACTATCTCG
1 ATCTCACACACTAAGTCACAATATATATAGCTGAAACTATCTCG
* **
16200525 ATTTCGTACACTAAGT
1 ATCTCACACACTAAGT
16200541 GCCCATAATT
Statistics
Matches: 49, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
42 23 0.47
43 2 0.04
44 24 0.49
ACGTcount: A:0.36, C:0.22, G:0.11, T:0.31
Consensus pattern (44 bp):
ATCTCACACACTAAGTCACAATATATATAGCTGAAACTATCTCG
Found at i:16202486 original size:27 final size:27
Alignment explanation
Indices: 16202446--16202551 Score: 122
Period size: 27 Copynumber: 3.9 Consensus size: 27
16202436 CCCAAGTTGA
* * *
16202446 AAAAAGACTGTTTTGCTCTAATGTGGT
1 AAAATGACTGTTTTGCCCTTATGTGGT
* *
16202473 AAAATGACTATTTTGCCCTTATGTGAT
1 AAAATGACTGTTTTGCCCTTATGTGGT
* *
16202500 AAAATGATTGTTTTACCCTTATGTGGT
1 AAAATGACTGTTTTGCCCTTATGTGGT
* * *
16202527 AAGATAACTGTTTTGCCCCTATGTG
1 AAAATGACTGTTTTGCCCTTATGTG
16202552 CTATATATAT
Statistics
Matches: 65, Mismatches: 14, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 65 1.00
ACGTcount: A:0.27, C:0.14, G:0.19, T:0.40
Consensus pattern (27 bp):
AAAATGACTGTTTTGCCCTTATGTGGT
Found at i:16207252 original size:80 final size:80
Alignment explanation
Indices: 16207114--16207311 Score: 258
Period size: 80 Copynumber: 2.5 Consensus size: 80
16207104 TCGAATGATG
* * * *
16207114 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCTGGACTAAGATTCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCTGGACTAAGATCCGAAGGCATT
*
16207178 TGTGTGAGTTACTAAA
65 TGTGCGAGTTACTAAA
*
16207194 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAAT-TCGGACTAAGATCCGAAGGCAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAATCT-GGACTAAGATCCGAAGGCAT
16207257 TTGTGCGAGTTACTAAA
64 TTGTGCGAGTTACTAAA
** * *
16207274 TTTGGGTTAAGTCCCGAAGGCATTTGTGCGAGCTACTA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA
16207312 TAACCGGGCT
Statistics
Matches: 103, Mismatches: 11, Indels: 8
0.84 0.09 0.07
Matches are distributed among these distances:
79 2 0.02
80 93 0.90
81 8 0.08
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.29
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCTGGACTAAGATCCGAAGGCATTT
GTGCGAGTTACTAAA
Found at i:16207339 original size:40 final size:40
Alignment explanation
Indices: 16207114--16207311 Score: 231
Period size: 40 Copynumber: 5.0 Consensus size: 40
16207104 TCGAATGATG
* * * *
16207114 TCCGGGCTAAG-TCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGACTAAGAT-CCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
16207154 TCTGGACTAAGATTCGAAGGCATTTGTGTGAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
16207194 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
*
16207234 TTCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
** ** *
16207274 TTTGGGTTAAG-TCCCGAAGGCATTTGTGCGAGCTACTA
1 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA
16207312 TAACCGGGCT
Statistics
Matches: 140, Mismatches: 15, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
39 1 0.01
40 132 0.94
41 7 0.05
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.29
Consensus pattern (40 bp):
TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:16209159 original size:27 final size:27
Alignment explanation
Indices: 16209121--16209219 Score: 126
Period size: 27 Copynumber: 3.7 Consensus size: 27
16209111 CCCAAGTTGA
* * *
16209121 AAAAAGACTGTTTTGCTCTAATATGGT
1 AAAATGACTGTTTTGCCCTTATATGGT
* *
16209148 AAAATGACTGTTTTGCCCTTATGTGAT
1 AAAATGACTGTTTTGCCCTTATATGGT
* *
16209175 AAAATGATTGTTTTGCCCTTTTATGGT
1 AAAATGACTGTTTTGCCCTTATATGGT
*
16209202 AAGATGACTGTTTTGCCC
1 AAAATGACTGTTTTGCCC
16209220 CTATGTGTTG
Statistics
Matches: 61, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 61 1.00
ACGTcount: A:0.26, C:0.14, G:0.19, T:0.40
Consensus pattern (27 bp):
AAAATGACTGTTTTGCCCTTATATGGT
Found at i:16209606 original size:34 final size:35
Alignment explanation
Indices: 16209532--16209611 Score: 92
Period size: 34 Copynumber: 2.3 Consensus size: 35
16209522 TTGTATATCT
* *
16209532 ATACTGTTACT-ATCACTGAAATGGTCTAAGGCCC
1 ATACTGATACTGATCACTGAAATGGGCTAAGGCCC
* *
16209566 ACACTGATACTGAT-ACTGTAATGGGCTAAGGCCC
1 ATACTGATACTGATCACTGAAATGGGCTAAGGCCC
* *
16209600 TTACTGAAACTG
1 ATACTGATACTG
16209612 CATTGTTACT
Statistics
Matches: 38, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
34 36 0.95
35 2 0.05
ACGTcount: A:0.30, C:0.23, G:0.20, T:0.28
Consensus pattern (35 bp):
ATACTGATACTGATCACTGAAATGGGCTAAGGCCC
Found at i:16212688 original size:27 final size:27
Alignment explanation
Indices: 16212657--16212754 Score: 97
Period size: 27 Copynumber: 3.6 Consensus size: 27
16212647 GAAAATTGAC
* *
16212657 TGTTTTTCCCTTATATGGTAAAATAAA
1 TGTTTTACCCTTATGTGGTAAAATAAA
* * *
16212684 TGTTTTACCTTTATGTGGTAAAATGAT
1 TGTTTTACCCTTATGTGGTAAAATAAA
* * * *
16212711 TGTTTTGCCCTTATGTGGTAAGATGAC
1 TGTTTTACCCTTATGTGGTAAAATAAA
* *
16212738 TGTTTTGCCCCTATGTG
1 TGTTTTACCCTTATGTG
16212755 TTGTATATAT
Statistics
Matches: 61, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 61 1.00
ACGTcount: A:0.22, C:0.13, G:0.19, T:0.45
Consensus pattern (27 bp):
TGTTTTACCCTTATGTGGTAAAATAAA
Found at i:16212753 original size:54 final size:55
Alignment explanation
Indices: 16212648--16212754 Score: 126
Period size: 54 Copynumber: 2.0 Consensus size: 55
16212638 CCCCAAATTG
* **
16212648 AAAATTGACTGTTTTTCCCTTATATGGTAAAATAAATGTTTTACCTTTATGTGGT
1 AAAATTGACTGTTTTGCCCTTATATGGTAAAATAAATGTTTTACCCCTATGTGGT
* * * * * *
16212703 AAAA-TGATTGTTTTGCCCTTATGTGGTAAGATGACTGTTTTGCCCCTATGTG
1 AAAATTGACTGTTTTGCCCTTATATGGTAAAATAAATGTTTTACCCCTATGTG
16212755 TTGTATATAT
Statistics
Matches: 43, Mismatches: 9, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
54 39 0.91
55 4 0.09
ACGTcount: A:0.25, C:0.13, G:0.19, T:0.43
Consensus pattern (55 bp):
AAAATTGACTGTTTTGCCCTTATATGGTAAAATAAATGTTTTACCCCTATGTGGT
Found at i:16216761 original size:41 final size:40
Alignment explanation
Indices: 16216628--16216770 Score: 211
Period size: 40 Copynumber: 3.6 Consensus size: 40
16216618 AACCCAAGTA
*
16216628 CCTTCGGGAT-TTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGG-TCTTAGCCCGGATATAGTC-ACTAGCACAAATG
*
16216667 CCTTCGGGTCTTAGCCTGGATATAGTCACTAGCACAAATG
1 CCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATG
*
16216707 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAATG
1 CCTTCGGGTCTTAGCCCGGATATAGTCACTAGCAC-AAATG
16216748 CCTTCGGGTCTTAGCCCGGATAT
1 CCTTCGGGTCTTAGCCCGGATAT
16216771 CATCCGAATA
Statistics
Matches: 95, Mismatches: 5, Indels: 6
0.90 0.05 0.06
Matches are distributed among these distances:
38 1 0.01
39 12 0.13
40 54 0.57
41 28 0.29
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:16221346 original size:29 final size:29
Alignment explanation
Indices: 16221313--16221472 Score: 187
Period size: 29 Copynumber: 5.5 Consensus size: 29
16221303 GTGACGAGAT
16221313 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
16221342 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
16221371 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
* ** * * ***
16221400 CGGCACTGGGTGTGCAAGCTCGAAGGGTA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
* ** * *
16221429 TGGCACTATGTGTGCGGGCTTG-AATCACA
1 TGGCACTAAGTGTGCATGCTGGAAAT-ATA
16221458 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
16221473 GAAATCGAGT
Statistics
Matches: 111, Mismatches: 19, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
28 1 0.01
29 110 0.99
ACGTcount: A:0.26, C:0.17, G:0.31, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:16228709 original size:27 final size:27
Alignment explanation
Indices: 16228365--16228828 Score: 578
Period size: 27 Copynumber: 17.2 Consensus size: 27
16228355 AAAGTACTCC
16228365 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
16228392 CGATTTACAGAATTACCATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
** *
16228419 CGATTTTTAAAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* * *
16228446 CAATTTATAGAATTACCCTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* * *
16228473 C-AGTTTACAAAATTACCATATTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
*
16228500 CGATTTACAGAATTACCGTTTTACCCC
1 CGATTTACAGAATTACCGTTTTACCCT
* *
16228527 CAATTTACAGAATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
16228554 CGATTTATAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
** * *
16228581 CGATTTGTAAAATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
**
16228608 C-AGTTTACAGAATTACTATTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
16228635 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
16228662 C-AGTTTACAGAATTACTGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
*
16228689 CGATTTACAGAATTATCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
** *
16228716 CGATTTGTAAAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
16228743 TGATTTACAGAATTACTAG-TTTACCCT
1 CGATTTACAGAATTAC-CGTTTTACCCT
* *
16228770 C-AGTTTACAAAATTATCGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
16228797 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
16228824 TGATT
1 CGATT
16228829 GTGAAATTAC
Statistics
Matches: 376, Mismatches: 51, Indels: 20
0.84 0.11 0.04
Matches are distributed among these distances:
26 5 0.01
27 366 0.97
28 5 0.01
ACGTcount: A:0.28, C:0.23, G:0.09, T:0.40
Consensus pattern (27 bp):
CGATTTACAGAATTACCGTTTTACCCT
Found at i:16228863 original size:27 final size:27
Alignment explanation
Indices: 16228833--16229028 Score: 248
Period size: 27 Copynumber: 7.3 Consensus size: 27
16228823 TTGATTGTGA
*
16228833 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
16228860 AATTTCCGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
16228887 AATTACTGAAATACCCTTATAGGATAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
16228914 AATTACCAAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
16228941 AATTATCGAAATACCCTTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
16228968 AAATACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
16228995 AATTACCGAGATACCCTTGTGGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
16229022 AATTACC
1 AATTACC
16229029 ATTTTGCCCC
Statistics
Matches: 144, Mismatches: 25, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 144 1.00
ACGTcount: A:0.36, C:0.19, G:0.19, T:0.26
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:16229265 original size:27 final size:26
Alignment explanation
Indices: 16229227--16229309 Score: 85
Period size: 27 Copynumber: 3.1 Consensus size: 26
16229217 CGGAGGAAGC
16229227 GTTCTGGTGGCTATGCCAAAAATATCT
1 GTTCTGGTGGCTATGCC-AAAATATCT
* *
16229254 GTTCTGGTGGCTCTGCCACAATATCT
1 GTTCTGGTGGCTATGCCAAAATATCT
* * * * *
16229280 GTATTTGGTGACTCTGTCACAATATCT
1 GT-TCTGGTGGCTATGCCAAAATATCT
16229307 GTT
1 GTT
16229310 GACCGATCGA
Statistics
Matches: 50, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
26 11 0.22
27 39 0.78
ACGTcount: A:0.20, C:0.20, G:0.22, T:0.37
Consensus pattern (26 bp):
GTTCTGGTGGCTATGCCAAAATATCT
Found at i:16229432 original size:22 final size:22
Alignment explanation
Indices: 16229404--16229455 Score: 59
Period size: 22 Copynumber: 2.4 Consensus size: 22
16229394 TTAATGACTC
16229404 TGTGCCAACCTAAATATGGCTT
1 TGTGCCAACCTAAATATGGCTT
* * * *
16229426 TGTGCCATCTTGACTATGGCTT
1 TGTGCCAACCTAAATATGGCTT
*
16229448 CGTGCCAA
1 TGTGCCAA
16229456 ACGTATTTCC
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.21, C:0.25, G:0.21, T:0.33
Consensus pattern (22 bp):
TGTGCCAACCTAAATATGGCTT
Found at i:16229642 original size:27 final size:27
Alignment explanation
Indices: 16229620--16229693 Score: 89
Period size: 27 Copynumber: 2.8 Consensus size: 27
16229610 TAGGTGGGTT
*
16229620 TGCCACATTATCTG-ATTCTGGTGGCTC
1 TGCCACAATATCTGTA-TCTGGTGGCTC
*
16229647 TGCCACAATATCTGTATCTGGTGACTC
1 TGCCACAATATCTGTATCTGGTGGCTC
* *
16229674 TGTCACGATATCTGT-TCTGG
1 TGCCACAATATCTGTATCTGG
16229694 CAGCCATGCT
Statistics
Matches: 42, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
26 5 0.12
27 36 0.86
28 1 0.02
ACGTcount: A:0.18, C:0.24, G:0.22, T:0.36
Consensus pattern (27 bp):
TGCCACAATATCTGTATCTGGTGGCTC
Found at i:16229820 original size:6 final size:6
Alignment explanation
Indices: 16229811--16229912 Score: 104
Period size: 6 Copynumber: 16.8 Consensus size: 6
16229801 TTGCATTCAC
* *
16229811 ATTCTG ATTCTG ATTCTG -TCACCTA ATTCTG ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG
*
16229860 -TTACTA ATAT-TG ATTCTG ATTCTG ATTCTG -TTACTG ATTCTG ATTCTG
1 ATT-CTG AT-TCTG ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG
16229908 ATTCT
1 ATTCT
16229913 CATTTTGGTT
Statistics
Matches: 81, Mismatches: 6, Indels: 18
0.77 0.06 0.17
Matches are distributed among these distances:
5 6 0.07
6 68 0.84
7 5 0.06
8 2 0.02
ACGTcount: A:0.20, C:0.18, G:0.14, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:16229933 original size:30 final size:30
Alignment explanation
Indices: 16229811--16229912 Score: 161
Period size: 30 Copynumber: 3.4 Consensus size: 30
16229801 TTGCATTCAC
*
16229811 ATTCTGATTCTGATTCTGTCACCTAATTCTG
1 ATTCTGATTCTGATTCTGTTA-CTAATTCTG
16229842 ATTCTGATTCTGATTCTGTTACTAATAT-TG
1 ATTCTGATTCTGATTCTGTTACTAAT-TCTG
*
16229872 ATTCTGATTCTGATTCTGTTACTGATTCTG
1 ATTCTGATTCTGATTCTGTTACTAATTCTG
16229902 ATTCTGATTCT
1 ATTCTGATTCT
16229913 CATTTTGGTT
Statistics
Matches: 67, Mismatches: 2, Indels: 5
0.91 0.03 0.07
Matches are distributed among these distances:
29 1 0.01
30 45 0.67
31 21 0.31
ACGTcount: A:0.20, C:0.18, G:0.14, T:0.49
Consensus pattern (30 bp):
ATTCTGATTCTGATTCTGTTACTAATTCTG
Found at i:16231554 original size:43 final size:41
Alignment explanation
Indices: 16231419--16231574 Score: 186
Period size: 42 Copynumber: 3.7 Consensus size: 41
16231409 ACTAAGTTTA
*
16231419 TGTGTAAGACCATATCTGGGATATGGCATCAGTATGAGACTT
1 TGTGTAAGACCATATCTGGGATATGGCATCAATATGAGA-TT
*
16231461 TGTGTAAGACCATATCTGGGATATGGCATCGATATGAGATTT
1 TGTGTAAGACCATATCTGGGATATGGCATCAATATGAGA-TT
* * * *
16231503 TGTTTAAGACCATAGCTGGGCTATTGGCATCAATAAGAGATT
1 TGTGTAAGACCATATCTGGGATA-TGGCATCAATATGAGATT
** * *
16231545 ACATGTAAGACTATATCTAGGATATGGCAT
1 -TGTGTAAGACCATATCTGGGATATGGCAT
16231575 TAGTATGGTA
Statistics
Matches: 97, Mismatches: 15, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
42 67 0.69
43 30 0.31
ACGTcount: A:0.31, C:0.13, G:0.24, T:0.31
Consensus pattern (41 bp):
TGTGTAAGACCATATCTGGGATATGGCATCAATATGAGATT
Found at i:16232296 original size:27 final size:27
Alignment explanation
Indices: 16232266--16232321 Score: 112
Period size: 27 Copynumber: 2.1 Consensus size: 27
16232256 CTGAATTAGT
16232266 TGATTGTAATTGCTTGGATTGGTGTTA
1 TGATTGTAATTGCTTGGATTGGTGTTA
16232293 TGATTGTAATTGCTTGGATTGGTGTTA
1 TGATTGTAATTGCTTGGATTGGTGTTA
16232320 TG
1 TG
16232322 TTTTGTTGTG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.18, C:0.04, G:0.30, T:0.48
Consensus pattern (27 bp):
TGATTGTAATTGCTTGGATTGGTGTTA
Done.