Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr02 99090824
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 99090824
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 317 characters in sequence are not A, C, G, or T
File 62 of 318
Found at i:17857935 original size:54 final size:54
Alignment explanation
Indices: 17857799--17857948 Score: 142
Period size: 54 Copynumber: 2.8 Consensus size: 54
17857789 CAATTTACAG
* ** * ** *
17857799 AATTACCAAAATACCCT-TGGTTTATAAAATCACCAAAATACCCCTGGTTTGTAA
1 AATTACTAAAATACCCTCT-GTGGATAAAATTACCAAAATACCAATGGTTTGAAA
* ** *
17857853 AATTACTAAAATACCCTTTGTTTATAAAATTACCAAAATACTAATGGTTTGAAA
1 AATTACTAAAATACCCTCTGTGGATAAAATTACCAAAATACCAATGGTTTGAAA
* **
17857907 AATTACTAAAATACCC-CTGTAGGGTAAAATTACTGAAATACC
1 AATTACTAAAATACCCTCTGT-GGATAAAATTACCAAAATACC
17857949 CTTGTGGGGT
Statistics
Matches: 81, Mismatches: 13, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
53 3 0.04
54 77 0.95
55 1 0.01
ACGTcount: A:0.42, C:0.18, G:0.09, T:0.31
Consensus pattern (54 bp):
AATTACTAAAATACCCTCTGTGGATAAAATTACCAAAATACCAATGGTTTGAAA
Found at i:17857951 original size:81 final size:81
Alignment explanation
Indices: 17857799--17857951 Score: 202
Period size: 81 Copynumber: 1.9 Consensus size: 81
17857789 CAATTTACAG
** **
17857799 AATTACCAAAATACCCTTGGTTTATAAAATCACCAAAATACCCCTGGTTTGTAAAATTACTAAAA
1 AATTACCAAAATACCAATGGTTTATAAAATCACCAAAATACCCCTGGTGGGTAAAATTACTAAAA
17857864 TACCCTTTGTTTATAA
66 TACCCTTTGTTTATAA
* * * *
17857880 AATTACCAAAATACTAATGGTTTGA-AAAATTACTAAAATACCCCT-GTAGGGTAAAATTACTGA
1 AATTACCAAAATACCAATGGTTT-ATAAAATCACCAAAATACCCCTGGT-GGGTAAAATTACTAA
17857943 AATACCCTT
64 AATACCCTT
17857952 GTGGGGTAAA
Statistics
Matches: 62, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
80 2 0.03
81 59 0.95
82 1 0.02
ACGTcount: A:0.41, C:0.18, G:0.09, T:0.31
Consensus pattern (81 bp):
AATTACCAAAATACCAATGGTTTATAAAATCACCAAAATACCCCTGGTGGGTAAAATTACTAAAA
TACCCTTTGTTTATAA
Found at i:17858653 original size:28 final size:28
Alignment explanation
Indices: 17858621--17858717 Score: 153
Period size: 28 Copynumber: 3.5 Consensus size: 28
17858611 GCATAGATCA
17858621 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
17858649 TGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
17858677 CGAAATTACCCCTAAATAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
17858705 C--AATATACCCCTA
1 CGAAAT-TACCCCTA
17858718 GGGTTTAAAT
Statistics
Matches: 65, Mismatches: 3, Indels: 3
0.92 0.04 0.04
Matches are distributed among these distances:
26 3 0.05
27 8 0.12
28 54 0.83
ACGTcount: A:0.45, C:0.26, G:0.08, T:0.21
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:17861989 original size:27 final size:27
Alignment explanation
Indices: 17861921--17861991 Score: 72
Period size: 27 Copynumber: 2.6 Consensus size: 27
17861911 CGACTTGTAA
* *
17861921 AATTACCAAAGTACTCC-CGATTTACAG
1 AATTACCAAAATAC-CCTCAATTTACAG
****
17861948 AATTACCGTTTTACCCTCAATTTACAG
1 AATTACCAAAATACCCTCAATTTACAG
17861975 AATTACCAAAATACCCT
1 AATTACCAAAATACCCT
17861992 TGGTTTATAA
Statistics
Matches: 34, Mismatches: 9, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
26 2 0.06
27 32 0.94
ACGTcount: A:0.37, C:0.27, G:0.07, T:0.30
Consensus pattern (27 bp):
AATTACCAAAATACCCTCAATTTACAG
Found at i:17861998 original size:27 final size:27
Alignment explanation
Indices: 17861975--17862098 Score: 160
Period size: 27 Copynumber: 4.6 Consensus size: 27
17861965 CAATTTACAG
17861975 AATTACCAAAATACCCTTGGTTTATAA
1 AATTACCAAAATACCCTTGGTTTATAA
* * *
17862002 AATCACCAAAATACCCCTGGTTTGTAA
1 AATTACCAAAATACCCTTGGTTTATAA
* *
17862029 AATTACTAAAATACCCTTTGTTTATAA
1 AATTACCAAAATACCCTTGGTTTATAA
**
17862056 AATTACCAAAATACCAATGGTTTGA-AA
1 AATTACCAAAATACCCTTGGTTT-ATAA
*
17862083 AATTACTAAAATACCC
1 AATTACCAAAATACCC
17862099 CTGTAGGGTA
Statistics
Matches: 82, Mismatches: 14, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
27 81 0.99
28 1 0.01
ACGTcount: A:0.43, C:0.19, G:0.07, T:0.31
Consensus pattern (27 bp):
AATTACCAAAATACCCTTGGTTTATAA
Found at i:17862017 original size:54 final size:53
Alignment explanation
Indices: 17861959--17862070 Score: 136
Period size: 54 Copynumber: 2.1 Consensus size: 53
17861949 ATTACCGTTT
17861959 TACCCTCAATT-TACAGAATTACCAAAATACCCTTGGTTTATAAAATCACCAAAA
1 TACCCTCAATTGTA-A-AATTACCAAAATACCCTTGGTTTATAAAATCACCAAAA
*** * * *
17862013 TACCCCTGGTTTGTAAAATTACTAAAATACCCTTTGTTTATAAAATTACCAAAA
1 TA-CCCTCAATTGTAAAATTACCAAAATACCCTTGGTTTATAAAATCACCAAAA
17862067 TACC
1 TACC
17862071 AATGGTTTGA
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
53 2 0.04
54 39 0.78
55 7 0.14
56 2 0.04
ACGTcount: A:0.40, C:0.22, G:0.06, T:0.31
Consensus pattern (53 bp):
TACCCTCAATTGTAAAATTACCAAAATACCCTTGGTTTATAAAATCACCAAAA
Found at i:17862077 original size:54 final size:54
Alignment explanation
Indices: 17861975--17862098 Score: 194
Period size: 54 Copynumber: 2.3 Consensus size: 54
17861965 CAATTTACAG
* ** *
17861975 AATTACCAAAATACCCTTGGTTTATAAAATCACCAAAATACCCCTGGTTTGTAA
1 AATTACTAAAATACCCTTGGTTTATAAAATCACCAAAATACCAATGGTTTGAAA
* *
17862029 AATTACTAAAATACCCTTTGTTTATAAAATTACCAAAATACCAATGGTTTGAAA
1 AATTACTAAAATACCCTTGGTTTATAAAATCACCAAAATACCAATGGTTTGAAA
17862083 AATTACTAAAATACCC
1 AATTACTAAAATACCC
17862099 CTGTAGGGTA
Statistics
Matches: 64, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
54 64 1.00
ACGTcount: A:0.43, C:0.19, G:0.07, T:0.31
Consensus pattern (54 bp):
AATTACTAAAATACCCTTGGTTTATAAAATCACCAAAATACCAATGGTTTGAAA
Found at i:17862111 original size:27 final size:27
Alignment explanation
Indices: 17862081--17862142 Score: 97
Period size: 27 Copynumber: 2.3 Consensus size: 27
17862071 AATGGTTTGA
17862081 AAAATTACTAAAATACCCCTGTAGGGT
1 AAAATTACTAAAATACCCCTGTAGGGT
* * *
17862108 AAAATTACTGAAATACCCTTGTGGGGT
1 AAAATTACTAAAATACCCCTGTAGGGT
17862135 AAAATTAC
1 AAAATTAC
17862143 CATTTTGCCC
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.40, C:0.16, G:0.16, T:0.27
Consensus pattern (27 bp):
AAAATTACTAAAATACCCCTGTAGGGT
Found at i:17862111 original size:54 final size:54
Alignment explanation
Indices: 17861975--17862124 Score: 151
Period size: 54 Copynumber: 2.8 Consensus size: 54
17861965 CAATTTACAG
* ** * ** *
17861975 AATTACCAAAATACCCT-TGGTTTATAAAATCACCAAAATACCCCTGGTTTGTAA
1 AATTACTAAAATACCCTCT-GTGGATAAAATTACCAAAATACCAATGGTTTGAAA
* **
17862029 AATTACTAAAATACCCTTTGTTTATAAAATTACCAAAATACCAATGGTTTGAAA
1 AATTACTAAAATACCCTCTGTGGATAAAATTACCAAAATACCAATGGTTTGAAA
* **
17862083 AATTACTAAAATACCC-CTGTAGGGTAAAATTACTGAAATACC
1 AATTACTAAAATACCCTCTGT-GGATAAAATTACCAAAATACC
17862125 CTTGTGGGGT
Statistics
Matches: 83, Mismatches: 11, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
53 3 0.04
54 79 0.95
55 1 0.01
ACGTcount: A:0.42, C:0.19, G:0.09, T:0.30
Consensus pattern (54 bp):
AATTACTAAAATACCCTCTGTGGATAAAATTACCAAAATACCAATGGTTTGAAA
Found at i:17862127 original size:81 final size:81
Alignment explanation
Indices: 17861975--17862127 Score: 211
Period size: 81 Copynumber: 1.9 Consensus size: 81
17861965 CAATTTACAG
** **
17861975 AATTACCAAAATACCCTTGGTTTATAAAATCACCAAAATACCCCTGGTTTGTAAAATTACTAAAA
1 AATTACCAAAATACCAATGGTTTATAAAATCACCAAAATACCCCTGGTGGGTAAAATTACTAAAA
17862040 TACCCTTTGTTTATAA
66 TACCCTTTGTTTATAA
* * *
17862056 AATTACCAAAATACCAATGGTTTGA-AAAATTACTAAAATACCCCT-GTAGGGTAAAATTACTGA
1 AATTACCAAAATACCAATGGTTT-ATAAAATCACCAAAATACCCCTGGT-GGGTAAAATTACTAA
17862119 AATACCCTT
64 AATACCCTT
17862128 GTGGGGTAAA
Statistics
Matches: 63, Mismatches: 7, Indels: 4
0.85 0.09 0.05
Matches are distributed among these distances:
80 2 0.03
81 60 0.95
82 1 0.02
ACGTcount: A:0.41, C:0.19, G:0.09, T:0.31
Consensus pattern (81 bp):
AATTACCAAAATACCAATGGTTTATAAAATCACCAAAATACCCCTGGTGGGTAAAATTACTAAAA
TACCCTTTGTTTATAA
Found at i:17862779 original size:41 final size:41
Alignment explanation
Indices: 17862731--17862814 Score: 168
Period size: 41 Copynumber: 2.0 Consensus size: 41
17862721 ATAAAAATTA
17862731 CTGAATTAGCTTGTGTAGTAGCGTAGATCACGAAATTACCC
1 CTGAATTAGCTTGTGTAGTAGCGTAGATCACGAAATTACCC
17862772 CTGAATTAGCTTGTGTAGTAGCGTAGATCACGAAATTACCC
1 CTGAATTAGCTTGTGTAGTAGCGTAGATCACGAAATTACCC
17862813 CT
1 CT
17862815 AAAGAGCAAA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 43 1.00
ACGTcount: A:0.29, C:0.20, G:0.21, T:0.30
Consensus pattern (41 bp):
CTGAATTAGCTTGTGTAGTAGCGTAGATCACGAAATTACCC
Found at i:17862835 original size:28 final size:28
Alignment explanation
Indices: 17862802--17862898 Score: 153
Period size: 28 Copynumber: 3.5 Consensus size: 28
17862792 GCGTAGATCA
17862802 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
17862830 TGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
17862858 CGAAATTACCCCTAAATAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
17862886 C--AATATACCCCTA
1 CGAAAT-TACCCCTA
17862899 GGGTTTAAAT
Statistics
Matches: 65, Mismatches: 3, Indels: 3
0.92 0.04 0.04
Matches are distributed among these distances:
26 3 0.05
27 8 0.12
28 54 0.83
ACGTcount: A:0.45, C:0.26, G:0.08, T:0.21
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:17873241 original size:43 final size:43
Alignment explanation
Indices: 17873157--17873238 Score: 123
Period size: 43 Copynumber: 2.0 Consensus size: 43
17873147 ATATTGTACA
* *
17873157 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCACATATCG
1 ATGCCAACGTCCCAAACGTGGTCTTACATGCAATCACATATCG
*
17873200 ATGCCAACGTCCCAAACGTGGTCTTACTTGC-A-CACATAT
1 ATGCCAACGTCCCAAACGTGGTCTTACATGCAATCACATAT
17873239 ATCAAAATCA
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
41 7 0.19
42 1 0.03
43 28 0.78
ACGTcount: A:0.28, C:0.29, G:0.17, T:0.26
Consensus pattern (43 bp):
ATGCCAACGTCCCAAACGTGGTCTTACATGCAATCACATATCG
Found at i:17873260 original size:56 final size:56
Alignment explanation
Indices: 17873188--17873301 Score: 156
Period size: 56 Copynumber: 2.0 Consensus size: 56
17873178 TCTTACATGT
* * *
17873188 AATCACATATCGATGCCAACGTCCCAAACGTGGTCTTACTTGCACACATATATCAA
1 AATCACATATCAATGCCAACGTACCAAACGTGGTCTTACTCGCACACATATATCAA
* ** * *
17873244 AATCACATATCAATGCCAATGTATTAAACGTGGTCTTACTCGCACAGATATATGAA
1 AATCACATATCAATGCCAACGTACCAAACGTGGTCTTACTCGCACACATATATCAA
17873300 AA
1 AA
17873302 CCATGGTCTT
Statistics
Matches: 50, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
56 50 1.00
ACGTcount: A:0.37, C:0.24, G:0.13, T:0.26
Consensus pattern (56 bp):
AATCACATATCAATGCCAACGTACCAAACGTGGTCTTACTCGCACACATATATCAA
Found at i:17874998 original size:612 final size:612
Alignment explanation
Indices: 17873835--17875059 Score: 2353
Period size: 612 Copynumber: 2.0 Consensus size: 612
17873825 GAATCTGGCC
*
17873835 TGTAACACCCCTATCCTGTAACCATCGCCGGAATAGGTAAGGGGCATTACCAGACTTGTAACTCA
1 TGTAACACCCCTATCCCGTAACCATCGCCGGAATAGGTAAGGGGCATTACCAGACTTGTAACTCA
17873900 TGTCAGAACAGTAAAATTTTGAACTTTTTCTTGAAATAAAGATCATTCATTTAAATAAGTACTAA
66 TGTCAGAACAGTAAAATTTTGAACTTTTTCTTGAAATAAAGATCATTCATTTAAATAAGTACTAA
*
17873965 GCACAGCCAGGAATAAAATTTAAACTTCACTAAGTAAGCATTCAAAAGATGCCATTTTCGCATGG
131 GCACAGCCAGGAATAAAATTTAAACTTCACTAAGTAAACATTCAAAAGATGCCATTTTCGCATGG
17874030 CTTATATACATTAACCAAAATATTCTTCCGCCACTAGTCTATTCTATACATGCCATAAAATAATT
196 CTTATATACATTAACCAAAATATTCTTCCGCCACTAGTCTATTCTATACATGCCATAAAATAATT
17874095 CTAGACATAACAGTAACAAGCAGTGGATAGTGATAGTGTGACTAGTTGCTGACGATCCCCCGAGC
261 CTAGACATAACAGTAACAAGCAGTGGATAGTGATAGTGTGACTAGTTGCTGACGATCCCCCGAGC
17874160 CTGTAGCTTCGCAATGAGATCTATAAAACAGTGAAAACAAAGTAAACGGAGTAAGCATTACAATG
326 CTGTAGCTTCGCAATGAGATCTATAAAACAGTGAAAACAAAGTAAACGGAGTAAGCATTACAATG
17874225 CTTAGTAAGTTTTAAGCAGTGTCAACAGATAACAATCAAATTATAACATAGTTGTTCGTATTTTT
391 CTTAGTAAGTTTTAAGCAGTGTCAACAGATAACAATCAAATTATAACATAGTTGTTCGTATTTTT
17874290 ATTTCACTCTTCCTTCGGGCATACCATCCCTTTACCGAATATGCACATCTCATCATATACAATAG
456 ATTTCACTCTTCCTTCGGGCATACCATCCCTTTACCGAATATGCACATCTCATCATATACAATAG
17874355 GCAGATAAACTTTCACATAAAAGTGAGCTCATGTGACATAGATATATTGTATGATTTCACATAAC
521 GCAGATAAACTTTCACATAAAAGTGAGCTCATGTGACATAGATATATTGTATGATTTCACATAAC
17874420 CTCTCACACTGATCCGATGTCACATAA
586 CTCTCACACTGATCCGATGTCACATAA
*
17874447 TGTAACACCCCTATCCCGTAACCATCGTCGGAATAGGTAAGGGGCATTACCAGACTTGTAACTCA
1 TGTAACACCCCTATCCCGTAACCATCGCCGGAATAGGTAAGGGGCATTACCAGACTTGTAACTCA
17874512 TGTCAGAACAGTAAAATTTTGAACTTTTTCTTGAAATAAAGATCATTCATTTAAATAAGTACTAA
66 TGTCAGAACAGTAAAATTTTGAACTTTTTCTTGAAATAAAGATCATTCATTTAAATAAGTACTAA
* *
17874577 GCACAGCCAGGGATAAAATTTAAACTTCTCTAAGTAAACATTCAAAAGATGCCATTTTCGCATGG
131 GCACAGCCAGGAATAAAATTTAAACTTCACTAAGTAAACATTCAAAAGATGCCATTTTCGCATGG
*
17874642 CTTATATACATTAACCAAAAATATTCTTCCGCCACTAGTCTATTCTGTACATGCCATAAAATAAT
196 CTTATATACATTAACC-AAAATATTCTTCCGCCACTAGTCTATTCTATACATGCCATAAAATAAT
*
17874707 TCTAGACATAACAGTAACAAGCAGTGGATAGTGATAGTGTGACTAGTTGCTGACGAT-CCCTGAG
260 TCTAGACATAACAGTAACAAGCAGTGGATAGTGATAGTGTGACTAGTTGCTGACGATCCCCCGAG
*
17874771 CCTGTAGCTTCGCAATGAGATCTATAAAACAGTGAAAATAAAGTAAACGGAGTAAGCATTACAAT
325 CCTGTAGCTTCGCAATGAGATCTATAAAACAGTGAAAACAAAGTAAACGGAGTAAGCATTACAAT
17874836 GCTTAGTAAGTTTTAAGCAGTGTCAACAGATAACAATCAAATTATAACATAGTTGTTCGTATTTT
390 GCTTAGTAAGTTTTAAGCAGTGTCAACAGATAACAATCAAATTATAACATAGTTGTTCGTATTTT
17874901 TATTTCACTCTTCCTTCGGGCATACCATCCCTTTACCGAATATGCACATCTCATCATATACAATA
455 TATTTCACTCTTCCTTCGGGCATACCATCCCTTTACCGAATATGCACATCTCATCATATACAATA
*
17874966 GGCAGGTAAACTTTCACATAAAAGTGAGCTCATGTGACATAGATATATTGTATGATTTCACATAA
520 GGCAGATAAACTTTCACATAAAAGTGAGCTCATGTGACATAGATATATTGTATGATTTCACATAA
17875031 CCTCTCACACTGATCCGATGTCACATAA
585 CCTCTCACACTGATCCGATGTCACATAA
17875059 T
1 T
17875060 CATAGGAATA
Statistics
Matches: 603, Mismatches: 9, Indels: 2
0.98 0.01 0.00
Matches are distributed among these distances:
612 499 0.83
613 104 0.17
ACGTcount: A:0.35, C:0.20, G:0.15, T:0.30
Consensus pattern (612 bp):
TGTAACACCCCTATCCCGTAACCATCGCCGGAATAGGTAAGGGGCATTACCAGACTTGTAACTCA
TGTCAGAACAGTAAAATTTTGAACTTTTTCTTGAAATAAAGATCATTCATTTAAATAAGTACTAA
GCACAGCCAGGAATAAAATTTAAACTTCACTAAGTAAACATTCAAAAGATGCCATTTTCGCATGG
CTTATATACATTAACCAAAATATTCTTCCGCCACTAGTCTATTCTATACATGCCATAAAATAATT
CTAGACATAACAGTAACAAGCAGTGGATAGTGATAGTGTGACTAGTTGCTGACGATCCCCCGAGC
CTGTAGCTTCGCAATGAGATCTATAAAACAGTGAAAACAAAGTAAACGGAGTAAGCATTACAATG
CTTAGTAAGTTTTAAGCAGTGTCAACAGATAACAATCAAATTATAACATAGTTGTTCGTATTTTT
ATTTCACTCTTCCTTCGGGCATACCATCCCTTTACCGAATATGCACATCTCATCATATACAATAG
GCAGATAAACTTTCACATAAAAGTGAGCTCATGTGACATAGATATATTGTATGATTTCACATAAC
CTCTCACACTGATCCGATGTCACATAA
Found at i:17875548 original size:46 final size:45
Alignment explanation
Indices: 17875480--17875616 Score: 166
Period size: 46 Copynumber: 3.0 Consensus size: 45
17875470 TATATATACA
* * * *
17875480 CATCTCATACATATCTCACATTAGCCATTTGGCTTTACGACATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTAC-ACATATC
* *
17875526 CATCTCATACACGTTTCGCATTAGCCATTCGGCTTTATCTCATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTA-CACATATC
* * *
17875572 TAACTCATACACATTTCGCATTAGCCATTCGGCCTTACCACATAT
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTA-CACATAT
17875617 ATACATGTTC
Statistics
Matches: 78, Mismatches: 12, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
46 77 0.99
47 1 0.01
ACGTcount: A:0.26, C:0.30, G:0.09, T:0.34
Consensus pattern (45 bp):
CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACACATATC
Found at i:17875650 original size:47 final size:47
Alignment explanation
Indices: 17875590--17875828 Score: 397
Period size: 47 Copynumber: 5.1 Consensus size: 47
17875580 ACACATTTCG
* * * **
17875590 CATTAGCCATTCGGCCTTACCACATATATACATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
* * *
17875637 CATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
*
17875684 CATTGGCCATTCGGCCTTATCGCACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
17875731 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
17875778 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
17875825 CATT
1 CATT
17875829 AAAATCCTAA
Statistics
Matches: 184, Mismatches: 8, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 184 1.00
ACGTcount: A:0.26, C:0.31, G:0.12, T:0.32
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
Found at i:17880000 original size:40 final size:40
Alignment explanation
Indices: 17879968--17880358 Score: 563
Period size: 40 Copynumber: 9.8 Consensus size: 40
17879958 CCAGCATGAT
* * * *
17879968 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
** ** *
17880008 TGCTCTTCGGGGTTTAGAACGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* * * *
17880048 TGCTCCTCGGAACTTATCCCGGATACTTCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* * *
17880088 TGCTCTTCAGGG-TTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTC-GGGACTTAGCCCGGATACATCACTAGCACGAA
* *
17880128 TGCTCTTCGGAACTTAGCCCGGATACGTCACCT-GCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCA-CTAGCACGAA
17880168 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
17880208 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
17880248 TGCTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
17880288 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
17880328 TGCTCTTCGGGACTTAGCCCGG-TATATCACT
1 TGCTCTTCGGGACTTAGCCCGGATACATCACT
17880359 CTCAATTCTC
Statistics
Matches: 314, Mismatches: 33, Indels: 9
0.88 0.09 0.03
Matches are distributed among these distances:
39 12 0.04
40 298 0.95
41 4 0.01
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.24
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
Found at i:17881914 original size:46 final size:46
Alignment explanation
Indices: 17881846--17881982 Score: 184
Period size: 46 Copynumber: 3.0 Consensus size: 46
17881836 TATATATACA
* * * *
17881846 CATCTCATACATATCTCACATTAGCCATTTGGCTTTACCACATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
* * *
17881892 CATCTCATACACGTTTCGCATTAGCCATTCGGCTTTATCTCATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
* * *
17881938 TAACTCATACACATTTCGCATTAGCCATTCGGCCTTACCACATAT
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATAT
17881983 ATACATGTTC
Statistics
Matches: 78, Mismatches: 13, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
46 78 1.00
ACGTcount: A:0.26, C:0.31, G:0.09, T:0.34
Consensus pattern (46 bp):
CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
Found at i:17882016 original size:47 final size:47
Alignment explanation
Indices: 17881956--17882185 Score: 316
Period size: 47 Copynumber: 5.1 Consensus size: 47
17881946 ACACATTTCG
* * * **
17881956 CATTAGCCATTCGGCCTTACCACATATATACATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
* * *
17882003 CATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
*
17882050 CATTGGCCATTCGGCCTTATCGCACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
17882097 CATTGGCCATTCGGCCTTATCACACATACGCATG-------T--TCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
17882135 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
17882182 CATT
1 CATT
17882186 AAAATCCTAA
Statistics
Matches: 166, Mismatches: 8, Indels: 18
0.86 0.04 0.09
Matches are distributed among these distances:
38 37 0.22
40 1 0.01
45 1 0.01
47 127 0.77
ACGTcount: A:0.25, C:0.30, G:0.13, T:0.32
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
Found at i:17882119 original size:22 final size:22
Alignment explanation
Indices: 17882093--17882158 Score: 56
Period size: 22 Copynumber: 3.3 Consensus size: 22
17882083 GTTCACATTC
17882093 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* *
17882115 ATCACA-----CATAC-GCATGT
1 ATCACATTGGCCATTCGGCCT-T
17882132 -TCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
17882153 ATCACA
1 ATCACA
17882159 CATACGCATG
Statistics
Matches: 32, Mismatches: 4, Indels: 16
0.62 0.08 0.31
Matches are distributed among these distances:
16 8 0.25
17 5 0.16
21 5 0.16
22 14 0.44
ACGTcount: A:0.24, C:0.32, G:0.15, T:0.29
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:17882145 original size:38 final size:38
Alignment explanation
Indices: 17882094--17882176 Score: 166
Period size: 38 Copynumber: 2.2 Consensus size: 38
17882084 TTCACATTCA
17882094 TCACATTGGCCATTCGGCCTTATCACACATACGCATGT
1 TCACATTGGCCATTCGGCCTTATCACACATACGCATGT
17882132 TCACATTGGCCATTCGGCCTTATCACACATACGCATGT
1 TCACATTGGCCATTCGGCCTTATCACACATACGCATGT
17882170 TCACATT
1 TCACATT
17882177 CATCACATTA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 45 1.00
ACGTcount: A:0.24, C:0.31, G:0.14, T:0.30
Consensus pattern (38 bp):
TCACATTGGCCATTCGGCCTTATCACACATACGCATGT
Found at i:17886273 original size:27 final size:26
Alignment explanation
Indices: 17886217--17886273 Score: 60
Period size: 26 Copynumber: 2.2 Consensus size: 26
17886207 CAACCTTAAC
* ***
17886217 CCTAGGGGTATATCAGTAATTTTGTT
1 CCTAGGGGTAAATCAGTAATTTTCCA
*
17886243 CCTAGGGGTAAATCTGTAAATTTTCCA
1 CCTAGGGGTAAATCAGT-AATTTTCCA
17886270 CCTA
1 CCTA
17886274 TAAAGGTATT
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
26 15 0.60
27 10 0.40
ACGTcount: A:0.26, C:0.18, G:0.19, T:0.37
Consensus pattern (26 bp):
CCTAGGGGTAAATCAGTAATTTTCCA
Found at i:17889129 original size:16 final size:15
Alignment explanation
Indices: 17889088--17889132 Score: 56
Period size: 16 Copynumber: 2.9 Consensus size: 15
17889078 AAAAAAGATG
17889088 ATATTATTAA-TATA
1 ATATTATTAATTATA
*
17889102 AAATTATATAATTATA
1 ATATTAT-TAATTATA
17889118 ATATATATTAATTAT
1 ATAT-TATTAATTAT
17889133 TATCAACTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
14 6 0.23
15 3 0.12
16 14 0.54
17 3 0.12
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (15 bp):
ATATTATTAATTATA
Found at i:17889134 original size:19 final size:21
Alignment explanation
Indices: 17889089--17889135 Score: 53
Period size: 19 Copynumber: 2.3 Consensus size: 21
17889079 AAAAAGATGA
17889089 TATTATTAATATAAAATTATAT
1 TATTA-TAATATAAAATTATAT
* *
17889111 AATTATAATAT-ATATTA-AT
1 TATTATAATATAAAATTATAT
17889130 TATTAT
1 TATTAT
17889136 CAACTTTATA
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
19 7 0.32
20 5 0.23
21 6 0.27
22 4 0.18
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (21 bp):
TATTATAATATAAAATTATAT
Found at i:17894099 original size:24 final size:24
Alignment explanation
Indices: 17894072--17894118 Score: 94
Period size: 24 Copynumber: 2.0 Consensus size: 24
17894062 TAGCTGAAGA
17894072 TTAAATTAGCAATGTATCTGATGG
1 TTAAATTAGCAATGTATCTGATGG
17894096 TTAAATTAGCAATGTATCTGATG
1 TTAAATTAGCAATGTATCTGATG
17894119 ATACAATTGC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.34, C:0.09, G:0.19, T:0.38
Consensus pattern (24 bp):
TTAAATTAGCAATGTATCTGATGG
Found at i:17894126 original size:24 final size:24
Alignment explanation
Indices: 17894073--17894126 Score: 83
Period size: 24 Copynumber: 2.2 Consensus size: 24
17894063 AGCTGAAGAT
*
17894073 TAAATTAGCAATGTATCTGATGGT
1 TAAATTAGCAATGTATCTGATGGA
17894097 TAAATTAGCAATGTATCTGAT-GA
1 TAAATTAGCAATGTATCTGATGGA
17894120 TACAATT
1 TA-AATT
17894127 GCTGATAAAC
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
23 3 0.11
24 25 0.89
ACGTcount: A:0.37, C:0.09, G:0.17, T:0.37
Consensus pattern (24 bp):
TAAATTAGCAATGTATCTGATGGA
Found at i:17894468 original size:13 final size:13
Alignment explanation
Indices: 17894450--17894476 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
17894440 GGAGTAATTG
17894450 CACACGGGCGTGT
1 CACACGGGCGTGT
17894463 CACACGGGCGTGT
1 CACACGGGCGTGT
17894476 C
1 C
17894477 CCTGCCGAGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.33, G:0.37, T:0.15
Consensus pattern (13 bp):
CACACGGGCGTGT
Found at i:17907931 original size:40 final size:40
Alignment explanation
Indices: 17907865--17908031 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
17907855 AAATTGAATG
* * *
17907865 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
17907904 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
17907944 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
17907984 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
17908024 ATATCCGG
1 ATATCCGG
17908032 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:17915897 original size:40 final size:39
Alignment explanation
Indices: 17915840--17916024 Score: 217
Period size: 40 Copynumber: 4.6 Consensus size: 39
17915830 ATTAAATGAT
* * *
17915840 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAGTTAA
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGT-GTTAA
* * * *
17915880 ATCCGGGTTAAGACCCGAAGGCAATTATGCTAGTGACTAA
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGTG-TTAA
**
17915920 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAA
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAG-TGTTAA
* * **
17915960 ATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTTCT
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGT-GTTAA
17916000 ATCCGGGCTAAGACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATT
17916025 CGTGCATGTG
Statistics
Matches: 126, Mismatches: 16, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
39 2 0.02
40 122 0.97
41 2 0.02
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.24
Consensus pattern (39 bp):
ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGTGTTAA
Found at i:17915976 original size:80 final size:80
Alignment explanation
Indices: 17915839--17916045 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 80
17915829 AATTAAATGA
* * ** * *
17915839 TATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAGTTAAATCCGGGTTAAGACCCGAAGGCAA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGCAA
*
17915904 TTATGCTAGT-G-AC
66 TTATGCAAGTCGTAC
* *
17915917 TAAATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGC
1 T--ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGC
* * *
17915982 ATTTGTGCAAGTCGTTC
64 AATTATGCAAGTCGTAC
* * *
17915999 TATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGG
17916046 TTGTATTCCG
Statistics
Matches: 110, Mismatches: 15, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
78 1 0.01
80 106 0.96
81 1 0.01
82 2 0.02
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (80 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGCAA
TTATGCAAGTCGTAC
Found at i:17916030 original size:40 final size:39
Alignment explanation
Indices: 17915838--17916045 Score: 211
Period size: 40 Copynumber: 5.2 Consensus size: 39
17915828 CAATTAAATG
* * ** *
17915838 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-GTT
* * * * *
17915878 AAATCCGGGTTAAGACCCGAAGGCAATT-ATGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTG-TT
*
17915918 AAATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAG-TGTT
* * *
17915958 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-GTT
* *
17915998 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-GTT
17916038 ATATCCGG
1 ATATCCGG
17916046 TTGTATTCCG
Statistics
Matches: 145, Mismatches: 18, Indels: 10
0.84 0.10 0.06
Matches are distributed among these distances:
39 5 0.03
40 135 0.93
41 5 0.03
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGTT
Found at i:17922449 original size:46 final size:45
Alignment explanation
Indices: 17922398--17922559 Score: 159
Period size: 46 Copynumber: 3.5 Consensus size: 45
17922388 TAGCCAATGT
* *
17922398 ATGTCCCAGACATGTCTTATACTGGCTTACGTCCCAAGGCTGATGC
1 ATGTCCCAGACATGTCTTACACTGGC-TACGTCACAAGGCTGATGC
* * * *
17922444 ATGTCCAAGACATGTCTTACACTAGC-ACTGTCTCAATGCTGATGCC
1 ATGTCCCAGACATGTCTTACACTGGCTAC-GTCACAAGGCTGATG-C
* * *
17922490 ATGTCCTAGACATGGTCTTACACTGGCT-C-TCACAATGTGGCCGATAC
1 ATGTCCCAGACAT-GTCTTACACTGGCTACGTCACAA---GGCTGATGC
17922537 ATGTCCCAGACATGTCTTACACT
1 ATGTCCCAGACATGTCTTACACT
17922560 AGCTCAAACA
Statistics
Matches: 97, Mismatches: 12, Indels: 14
0.79 0.10 0.11
Matches are distributed among these distances:
44 2 0.02
45 18 0.19
46 46 0.47
47 26 0.27
48 5 0.05
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.28
Consensus pattern (45 bp):
ATGTCCCAGACATGTCTTACACTGGCTACGTCACAAGGCTGATGC
Found at i:17937181 original size:40 final size:40
Alignment explanation
Indices: 17937125--17937238 Score: 183
Period size: 40 Copynumber: 2.8 Consensus size: 40
17937115 CATGAGCATT
*
17937125 TGAATGATACCCGGGCTAAGTCCCGAAGGCATTTATGCTAG
1 TGAAT-ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAG
*
17937166 TGAATATATCCGGGCTAAGTCCCGAAGCCATTTATGCTAG
1 TGAATATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAG
* *
17937206 TGATTATATCCGGGCTAAGACCCGAAGGCATTT
1 TGAATATATCCGGGCTAAGTCCCGAAGGCATTT
17937239 GTGCAAGATA
Statistics
Matches: 68, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
40 63 0.93
41 5 0.07
ACGTcount: A:0.27, C:0.22, G:0.25, T:0.26
Consensus pattern (40 bp):
TGAATATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAG
Found at i:17937257 original size:40 final size:40
Alignment explanation
Indices: 17937125--17937302 Score: 180
Period size: 40 Copynumber: 4.5 Consensus size: 40
17937115 CATGAGCATT
* *
17937125 TGAATGATACCCGGGCTAAGTCCCGAAGGCATTTATGCTAG
1 TGAAT-ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAG
* *
17937166 TGAATATATCCGGGCTAAGTCCCGAAGCCATTTATGCTAG
1 TGAATATATCCGGGCTAAGACCCGAAGGCATTTATGCTAG
* * *
17937206 TGATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAG
1 TGAATATATCCGGGCTAAGACCCGAAGGCATTTATGCTAG
** * * * * *
17937246 AT-ACCAAATCCGGGTTAAGACCCGAAGGCAATTGTGCTTG
1 -TGAATATATCCGGGCTAAGACCCGAAGGCATTTATGCTAG
**
17937286 TGGTTATATCC-GGCTAA
1 TGAATATATCCGGGCTAA
17937303 ATTCCGAAGA
Statistics
Matches: 116, Mismatches: 19, Indels: 6
0.82 0.13 0.04
Matches are distributed among these distances:
39 6 0.05
40 104 0.90
41 6 0.05
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (40 bp):
TGAATATATCCGGGCTAAGACCCGAAGGCATTTATGCTAG
Found at i:17945236 original size:40 final size:40
Alignment explanation
Indices: 17945180--17945293 Score: 183
Period size: 40 Copynumber: 2.8 Consensus size: 40
17945170 CATGAGCATT
*
17945180 TGAATGATACCCGGGCTAAGTCCCGAAGGCATTTATGCTAG
1 TGAAT-ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAG
*
17945221 TGAATATATCCGGGCTAAGTCCCGAAGCCATTTATGCTAG
1 TGAATATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAG
* *
17945261 TGATTATATCCGGGCTAAGACCCGAAGGCATTT
1 TGAATATATCCGGGCTAAGTCCCGAAGGCATTT
17945294 GTGCAAGATA
Statistics
Matches: 68, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
40 63 0.93
41 5 0.07
ACGTcount: A:0.27, C:0.22, G:0.25, T:0.26
Consensus pattern (40 bp):
TGAATATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAG
Found at i:17945312 original size:40 final size:40
Alignment explanation
Indices: 17945180--17945357 Score: 180
Period size: 40 Copynumber: 4.5 Consensus size: 40
17945170 CATGAGCATT
* *
17945180 TGAATGATACCCGGGCTAAGTCCCGAAGGCATTTATGCTAG
1 TGAAT-ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAG
* *
17945221 TGAATATATCCGGGCTAAGTCCCGAAGCCATTTATGCTAG
1 TGAATATATCCGGGCTAAGACCCGAAGGCATTTATGCTAG
* * *
17945261 TGATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAG
1 TGAATATATCCGGGCTAAGACCCGAAGGCATTTATGCTAG
** * * * * *
17945301 AT-ACCAAATCCGGGTTAAGACCCGAAGGCAATTGTGCTTG
1 -TGAATATATCCGGGCTAAGACCCGAAGGCATTTATGCTAG
**
17945341 TGGTTATATCC-GGCTAA
1 TGAATATATCCGGGCTAA
17945358 ATTCTGAAGA
Statistics
Matches: 116, Mismatches: 19, Indels: 6
0.82 0.13 0.04
Matches are distributed among these distances:
39 6 0.05
40 104 0.90
41 6 0.05
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (40 bp):
TGAATATATCCGGGCTAAGACCCGAAGGCATTTATGCTAG
Found at i:17956532 original size:250 final size:249
Alignment explanation
Indices: 17956086--17956587 Score: 941
Period size: 250 Copynumber: 2.0 Consensus size: 249
17956076 TATTCGTAAC
*
17956086 AAATACAGGACCTTAGCCGTTAGTAGGAAATTCAAGACCAACACCCGAAACATAAAATCTCCAAT
1 AAATACAGGACCTTAGCCGTTAGTAGGAAATTCAAGACCAACACCCGAAACATAAAATCCCCAAT
*
17956151 GACATGTCATTTGTATCCAATGAATTCCTAAGGTTCAACCGGGAGTCATTATCTATCAATTCATC
66 GACATGTCATTTGTATCCAATGAATTCCTAAGGTTCAACCGGGACTCATTATCTATCAATTCATC
17956216 ATAGCATTGATAAGTTCATATATCTTTCCATTTGTGATATAAATAACATAATAACAATCAATGTA
131 ATAGCATTGATAAGTTCATATATCTTTCCATTTGTGATATAAATAACATAATAACAATCAATGTA
*
17956281 ATTAACATTAATATGATAACCATTCATATGAACTTACCTCGACGTCTAGGACGTA
196 ATTAACATTAATATGATAA-CATTCATATGAACTTACCTCGACATCTAGGACGTA
* *
17956336 AAATGCAGGACCTTATCCGTTAGTAGGAAATTCAAGACCAACACCCGAAACATAAAATCCCCAAT
1 AAATACAGGACCTTAGCCGTTAGTAGGAAATTCAAGACCAACACCCGAAACATAAAATCCCCAAT
17956401 GACATGTCATTTGTATCCAATGAATTCCTAAGGTTCAACCGGGACTCATTATCTATCAATTCATC
66 GACATGTCATTTGTATCCAATGAATTCCTAAGGTTCAACCGGGACTCATTATCTATCAATTCATC
*
17956466 ATAGCATTGATAAGTTCATATATCTTTCCATTTTTGATATAAATAACATAATAACAATCAATGTA
131 ATAGCATTGATAAGTTCATATATCTTTCCATTTGTGATATAAATAACATAATAACAATCAATGTA
17956531 ATTAACATTAATATGATAACATTCATATGAACTTACCTCGACATCTAGGACGTA
196 ATTAACATTAATATGATAACATTCATATGAACTTACCTCGACATCTAGGACGTA
17956585 AAA
1 AAA
17956588 ACGAAGTCGA
Statistics
Matches: 246, Mismatches: 6, Indels: 1
0.97 0.02 0.00
Matches are distributed among these distances:
249 37 0.15
250 209 0.85
ACGTcount: A:0.38, C:0.20, G:0.12, T:0.30
Consensus pattern (249 bp):
AAATACAGGACCTTAGCCGTTAGTAGGAAATTCAAGACCAACACCCGAAACATAAAATCCCCAAT
GACATGTCATTTGTATCCAATGAATTCCTAAGGTTCAACCGGGACTCATTATCTATCAATTCATC
ATAGCATTGATAAGTTCATATATCTTTCCATTTGTGATATAAATAACATAATAACAATCAATGTA
ATTAACATTAATATGATAACATTCATATGAACTTACCTCGACATCTAGGACGTA
Found at i:17960085 original size:93 final size:93
Alignment explanation
Indices: 17959972--17960143 Score: 254
Period size: 93 Copynumber: 1.8 Consensus size: 93
17959962 GCCCATAAGT
* * **
17959972 GAACTCGGACTCAACTCAACGAGCTCGGGCCTTCGCATCCATAAGTTTACTCAGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
*
17960037 CGAGCTCGGATGCCTTGTTACATCTCAC
66 CGAGCTCGAATGCCTTGTTACATCTCAC
* ** *
17960065 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTTGGACTCAACTGAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
*
17960130 CGAGTTCGAATGCC
66 CGAGCTCGAATGCC
17960144 CAAATGTCCC
Statistics
Matches: 69, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
93 69 1.00
ACGTcount: A:0.28, C:0.30, G:0.20, T:0.23
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
CGAGCTCGAATGCCTTGTTACATCTCAC
Found at i:17960137 original size:46 final size:46
Alignment explanation
Indices: 17959964--17960133 Score: 177
Period size: 46 Copynumber: 3.7 Consensus size: 46
17959954 TGTAACCCGC
*
17959964 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCCTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACCTTCGCAT
** *
17960010 CCATAAGTTTACTCAGACTCAACTCAACGAGCTCGGATGCCTT-GTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA--CCTTCG---CAT
* * * *
17960060 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACCTTCGCAT
* *
17960103 CCATAAGTGAACTTGGACTCAACTGAACGAG
1 CCATAAGTGAACTCGGACTCAACTCAACGAG
17960134 TTCGAATGCC
Statistics
Matches: 100, Mismatches: 15, Indels: 18
0.75 0.11 0.14
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 5 0.05
46 55 0.55
47 26 0.26
48 6 0.06
49 1 0.01
50 3 0.03
ACGTcount: A:0.29, C:0.29, G:0.19, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACCTTCGCAT
Found at i:17962548 original size:15 final size:15
Alignment explanation
Indices: 17962512--17962606 Score: 81
Period size: 15 Copynumber: 6.4 Consensus size: 15
17962502 TTATGGAACA
*
17962512 AAGATAACAGAAAACC
1 AAGATAA-AGAAATCC
*
17962528 GA-ATAAAGAAATCC
1 AAGATAAAGAAATCC
17962542 AAGAT-AAGAAA-CC
1 AAGATAAAGAAATCC
*
17962555 CAGAATAAAGAAATCC
1 AAG-ATAAAGAAATCC
*
17962571 -AGAATAAAGAGATCC
1 AAG-ATAAAGAAATCC
* *
17962586 AGGATAAAGAAACCC
1 AAGATAAAGAAATCC
17962601 AAGATA
1 AAGATA
17962607 CGATACTATG
Statistics
Matches: 65, Mismatches: 9, Indels: 11
0.76 0.11 0.13
Matches are distributed among these distances:
13 4 0.06
14 16 0.25
15 41 0.63
16 4 0.06
ACGTcount: A:0.58, C:0.16, G:0.16, T:0.11
Consensus pattern (15 bp):
AAGATAAAGAAATCC
Found at i:17962548 original size:30 final size:30
Alignment explanation
Indices: 17962512--17962606 Score: 106
Period size: 30 Copynumber: 3.2 Consensus size: 30
17962502 TTATGGAACA
17962512 AAGATAACAGAAAACC-GAATAAAGAAATCC
1 AAGATAA-AGAAAACCAGAATAAAGAAATCC
*
17962542 AAGAT-AAGAAACCCAGAATAAAGAAATCC
1 AAGATAAAGAAAACCAGAATAAAGAAATCC
* * * *
17962571 -AGAATAAAGAGATCCAGGATAAAGAAACCC
1 AAG-ATAAAGAAAACCAGAATAAAGAAATCC
17962601 AAGATA
1 AAGATA
17962607 CGATACTATG
Statistics
Matches: 56, Mismatches: 5, Indels: 8
0.81 0.07 0.12
Matches are distributed among these distances:
28 9 0.16
29 17 0.30
30 28 0.50
31 2 0.04
ACGTcount: A:0.58, C:0.16, G:0.16, T:0.11
Consensus pattern (30 bp):
AAGATAAAGAAAACCAGAATAAAGAAATCC
Found at i:17962586 original size:44 final size:45
Alignment explanation
Indices: 17962515--17962601 Score: 124
Period size: 44 Copynumber: 2.0 Consensus size: 45
17962505 TGGAACAAAG
17962515 ATAACAGAAAACCGAATAAAGAAATCCAAGAT-AAGAAACCCAGA
1 ATAACAGAAAACCGAATAAAGAAATCCAAGATAAAGAAACCCAGA
* * *
17962559 ATAA-AGAAATCCAGAATAAAGAGATCCAGGATAAAGAAACCCA
1 ATAACAGAAAACC-GAATAAAGAAATCCAAGATAAAGAAACCCA
17962602 AGATACGATA
Statistics
Matches: 38, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
43 7 0.18
44 21 0.55
45 10 0.26
ACGTcount: A:0.57, C:0.17, G:0.15, T:0.10
Consensus pattern (45 bp):
ATAACAGAAAACCGAATAAAGAAATCCAAGATAAAGAAACCCAGA
Found at i:17968344 original size:29 final size:29
Alignment explanation
Indices: 17968309--17968382 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
17968299 GTTGTGAGAT
* *
17968309 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
17968338 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
17968367 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
17968383 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:17971359 original size:43 final size:43
Alignment explanation
Indices: 17971298--17971412 Score: 178
Period size: 43 Copynumber: 2.7 Consensus size: 43
17971288 AATTCGGGCT
17971298 TCGAGCCTAGCAGGCTATAATGCCGGTGAAATAATATCGAGCC
1 TCGAGCCTAGCAGGCTATAATGCCGGTGAAATAATATCGAGCC
* * * *
17971341 TCGAGCCTAGCAAGCTATAATGCCAGTGAAATAATATCGGGCT
1 TCGAGCCTAGCAGGCTATAATGCCGGTGAAATAATATCGAGCC
*
17971384 TCGAGCCTAGCAGGCGA-AATGCCGGTGAA
1 TCGAGCCTAGCAGGCTATAATGCCGGTGAA
17971413 TGAATTTAGA
Statistics
Matches: 65, Mismatches: 7, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
42 11 0.17
43 54 0.83
ACGTcount: A:0.30, C:0.23, G:0.27, T:0.20
Consensus pattern (43 bp):
TCGAGCCTAGCAGGCTATAATGCCGGTGAAATAATATCGAGCC
Found at i:17972006 original size:16 final size:18
Alignment explanation
Indices: 17971975--17972007 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
17971965 AAATCGTCAC
17971975 ACTATCTATCGTTTTGGT
1 ACTATCTATCGTTTTGGT
17971993 ACTAT-TAT-GTTTTGG
1 ACTATCTATCGTTTTGG
17972008 AATTCGTATG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 3 0.20
18 5 0.33
ACGTcount: A:0.18, C:0.12, G:0.18, T:0.52
Consensus pattern (18 bp):
ACTATCTATCGTTTTGGT
Found at i:17977877 original size:18 final size:18
Alignment explanation
Indices: 17977835--17977870 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
17977825 ATGCATTCAT
17977835 GAGCATGGTTCATGCTTC
1 GAGCATGGTTCATGCTTC
17977853 GAGCATGGTTCATGCTTC
1 GAGCATGGTTCATGCTTC
17977871 TTGCATGTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.17, C:0.22, G:0.28, T:0.33
Consensus pattern (18 bp):
GAGCATGGTTCATGCTTC
Found at i:17983995 original size:40 final size:40
Alignment explanation
Indices: 17983893--17984075 Score: 174
Period size: 40 Copynumber: 4.6 Consensus size: 40
17983883 AAATTGAATG
* * * * *
17983893 ATATCCGGGCTAAGCCCCGAAGACAATTATGCT-GAAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAG-TAGTT
* *
17983933 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
*
17983973 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-AGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTAGTT
* * * * * *
17984012 AAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGTG
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* * *
17984052 ATATCCGGGTTAAGTCCCGTAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
17984076 CTTGGTGCGG
Statistics
Matches: 120, Mismatches: 19, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
39 35 0.29
40 84 0.70
41 1 0.01
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
Found at i:17984028 original size:39 final size:38
Alignment explanation
Indices: 17983935--17984044 Score: 148
Period size: 39 Copynumber: 2.8 Consensus size: 38
17983925 TGAAAATTAT
* *
17983935 ATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCTAT
1 ATCCGGGCTAAGACCCGAAGGC-ATTGTGC-AGTAGCTAA
* *
17983975 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAGTTGTTAA
1 ATCCGGGCTAAGACCCGAAGGCATT-GTGCAGTAGCTAA
17984014 ATCCGGGCTAAGACCCGAAGGCATTTGTGCA
1 ATCCGGGCTAAGACCCGAAGGCA-TTGTGCA
17984045 AATCGTGATA
Statistics
Matches: 64, Mismatches: 4, Indels: 5
0.88 0.05 0.07
Matches are distributed among these distances:
39 37 0.58
40 27 0.42
ACGTcount: A:0.26, C:0.23, G:0.28, T:0.23
Consensus pattern (38 bp):
ATCCGGGCTAAGACCCGAAGGCATTGTGCAGTAGCTAA
Found at i:17987442 original size:43 final size:43
Alignment explanation
Indices: 17987374--17987495 Score: 183
Period size: 43 Copynumber: 2.9 Consensus size: 43
17987364 TATGATGAAT
* *
17987374 TCGGGCTTCGAGCCTAGCAGGCTATAATGCTGGTGAAATAATA
1 TCGGGCCTCGAGCCTAGCAGGCTATAATGCCGGTGAAATAATA
*
17987417 TCTGGCCTCGAGCCTAGCAGGCTATAATGCCGGTGAAATAATA
1 TCGGGCCTCGAGCCTAGCAGGCTATAATGCCGGTGAAATAATA
* **
17987460 TCGGGCTTCGAGCCTAGCAGGGGA-AATGCCGGTGAA
1 TCGGGCCTCGAGCCTAGCAGGCTATAATGCCGGTGAA
17987496 TAAATTCAGA
Statistics
Matches: 72, Mismatches: 7, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
42 12 0.17
43 60 0.83
ACGTcount: A:0.26, C:0.21, G:0.30, T:0.22
Consensus pattern (43 bp):
TCGGGCCTCGAGCCTAGCAGGCTATAATGCCGGTGAAATAATA
Found at i:17988835 original size:27 final size:28
Alignment explanation
Indices: 17988804--17989014 Score: 226
Period size: 28 Copynumber: 7.6 Consensus size: 28
17988794 AAAGTTAAAC
* * *
17988804 AGAGAGCTCGTATAGAGTAGA-CCAAAA
1 AGAGAGCTCGCATAAAGTAGAGCCAAAT
* *
17988831 AGAGAACTCGCATAAAGCAGAGCCAAAT
1 AGAGAGCTCGCATAAAGTAGAGCCAAAT
* * *
17988859 AGAAAGCTCACACAAAGTAGAGCCAAAT
1 AGAGAGCTCGCATAAAGTAGAGCCAAAT
* * * *
17988887 AGAGAGCTCACACAAAGCAAAGCCAAAT
1 AGAGAGCTCGCATAAAGTAGAGCCAAAT
* **
17988915 AGAGAGCTCGTATAAAGTAGAGATAAAT
1 AGAGAGCTCGCATAAAGTAGAGCCAAAT
* * * *
17988943 AGAGAGGTTGCATAAAGTAGATCTAAAT
1 AGAGAGCTCGCATAAAGTAGAGCCAAAT
* *
17988971 AGAGAGCTCACACAAAGTAGAGCCAAAT
1 AGAGAGCTCGCATAAAGTAGAGCCAAAT
17988999 AGAGAGCTCGCATAAA
1 AGAGAGCTCGCATAAA
17989015 CAGAGCTAAA
Statistics
Matches: 150, Mismatches: 33, Indels: 1
0.82 0.18 0.01
Matches are distributed among these distances:
27 17 0.11
28 133 0.89
ACGTcount: A:0.46, C:0.17, G:0.22, T:0.14
Consensus pattern (28 bp):
AGAGAGCTCGCATAAAGTAGAGCCAAAT
Found at i:17988913 original size:84 final size:84
Alignment explanation
Indices: 17988825--17989020 Score: 250
Period size: 84 Copynumber: 2.3 Consensus size: 84
17988815 ATAGAGTAGA
* *
17988825 CCAAAAAGAGAACTCGCATAAAGCAGAGCCAAATAGAAAGCTCACACAAAGTAGAGCCAAATAGA
1 CCAAATAGAGAGCTCGCATAAAGCAGAGCCAAATAGAAAGCTCACACAAAGTAGAGCCAAATAGA
17988890 GAGCTCACACAAAGCAAAG
66 GAGCTCACACAAAGCAAAG
* * ** * * ** * * *
17988909 CCAAATAGAGAGCTCGTATAAAGTAGAGATAAATAGAGAGGTTGCATAAAGTAGATCTAAATAGA
1 CCAAATAGAGAGCTCGCATAAAGCAGAGCCAAATAGAAAGCTCACACAAAGTAGAGCCAAATAGA
* *
17988974 GAGCTCACACAAAGTAGAG
66 GAGCTCACACAAAGCAAAG
17988993 CCAAATAGAGAGCTCGCATAAA-CAGAGC
1 CCAAATAGAGAGCTCGCATAAAGCAGAGC
17989021 TAAAACATTT
Statistics
Matches: 94, Mismatches: 18, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
83 4 0.04
84 90 0.96
ACGTcount: A:0.47, C:0.18, G:0.21, T:0.13
Consensus pattern (84 bp):
CCAAATAGAGAGCTCGCATAAAGCAGAGCCAAATAGAAAGCTCACACAAAGTAGAGCCAAATAGA
GAGCTCACACAAAGCAAAG
Found at i:17992623 original size:25 final size:25
Alignment explanation
Indices: 17992594--17992654 Score: 70
Period size: 25 Copynumber: 2.4 Consensus size: 25
17992584 CTTTGACCAA
* *
17992594 AGAACCCAATTTGCACCTTGAC-TGG
1 AGAACCCAATTTACAACTT-ACATGG
* *
17992619 TGAACCCAGTTTACAACTTACATGG
1 AGAACCCAATTTACAACTTACATGG
17992644 AGAACCCAATT
1 AGAACCCAATT
17992655 CGCCACACAG
Statistics
Matches: 29, Mismatches: 6, Indels: 2
0.78 0.16 0.05
Matches are distributed among these distances:
24 2 0.07
25 27 0.93
ACGTcount: A:0.33, C:0.26, G:0.16, T:0.25
Consensus pattern (25 bp):
AGAACCCAATTTACAACTTACATGG
Found at i:17996530 original size:40 final size:40
Alignment explanation
Indices: 17996403--17996532 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
17996393 ATGCTGGAAA
* *
17996403 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * **
17996443 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
17996483 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
17996523 TTATATCCGG
1 TTATATCCGG
17996533 TTGTATTCCG
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 4 0.05
40 72 0.95
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:18000049 original size:49 final size:47
Alignment explanation
Indices: 17999885--18000232 Score: 498
Period size: 47 Copynumber: 7.3 Consensus size: 47
17999875 GTATGAGATA
* * * *
17999885 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAAAGTGAAAATG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
17999932 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAATTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
17999979 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA--GTG
*
18000028 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
18000075 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTG
1 --TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* * *
18000124 TATATATGCGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* * * * * * *
18000171 TATATATGTGATAGGGCCGAGTGGCCAACGTGATGGATGTGGAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
18000218 TATAAATGTGATAAG
1 TATATATGTGATAAG
18000233 TCCCGAAGGG
Statistics
Matches: 279, Mismatches: 18, Indels: 8
0.91 0.06 0.03
Matches are distributed among these distances:
47 187 0.67
49 92 0.33
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
Found at i:18004706 original size:44 final size:47
Alignment explanation
Indices: 18004627--18004735 Score: 127
Period size: 44 Copynumber: 2.4 Consensus size: 47
18004617 CGGAGCTTGC
* * * * *
18004627 GCATATGTTGTAGACT-AAGAATACAAGATTAGGTTTC-GAGCTCCT
1 GCATATGTTGTAGACTCGAGAATACAAAAATAGGTTTCTAAGCTCAT
*
18004672 G-ATATGTTGCAGACTCGAGAATACAAAAAT-GGTTTCTAAGCTCAT
1 GCATATGTTGTAGACTCGAGAATACAAAAATAGGTTTCTAAGCTCAT
*
18004717 GCATTTGTTGTAGACTCGA
1 GCATATGTTGTAGACTCGA
18004736 AAAACCAAAG
Statistics
Matches: 53, Mismatches: 8, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
44 19 0.36
45 19 0.36
46 15 0.28
ACGTcount: A:0.31, C:0.16, G:0.22, T:0.31
Consensus pattern (47 bp):
GCATATGTTGTAGACTCGAGAATACAAAAATAGGTTTCTAAGCTCAT
Found at i:18033355 original size:19 final size:20
Alignment explanation
Indices: 18033324--18033361 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
18033314 TTCAGCTTTT
18033324 ACTTGTTGACAAA-TCAAAC
1 ACTTGTTGACAAATTCAAAC
18033343 ACTTGGTTG-CAAATTCAAA
1 ACTT-GTTGACAAATTCAAA
18033362 AATGTCCCTT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 8 0.47
20 9 0.53
ACGTcount: A:0.39, C:0.18, G:0.13, T:0.29
Consensus pattern (20 bp):
ACTTGTTGACAAATTCAAAC
Found at i:18047190 original size:46 final size:46
Alignment explanation
Indices: 18047137--18047265 Score: 213
Period size: 46 Copynumber: 2.8 Consensus size: 46
18047127 TATTTGGGCA
*
18047137 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
*
18047183 TCCGAACTCGTTGACTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * *
18047229 CCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
18047266 GCGGGTTACA
Statistics
Matches: 77, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 77 1.00
ACGTcount: A:0.20, C:0.22, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:18047396 original size:21 final size:21
Alignment explanation
Indices: 18047371--18047414 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
18047361 CTACTAAAAT
18047371 GGAGGAATACTCGAGATGAAA
1 GGAGGAATACTCGAGATGAAA
18047392 GGAGGAATACTCGAGATGAAA
1 GGAGGAATACTCGAGATGAAA
18047413 GG
1 GG
18047415 GATGTATTGG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.41, C:0.09, G:0.36, T:0.14
Consensus pattern (21 bp):
GGAGGAATACTCGAGATGAAA
Found at i:18050257 original size:15 final size:15
Alignment explanation
Indices: 18050237--18050291 Score: 76
Period size: 15 Copynumber: 3.7 Consensus size: 15
18050227 GTATCTTGGG
18050237 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
18050252 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
* *
18050267 TTTCTCTA-TCTTGGT
1 TTTCTTTATTC-TGGA
18050282 TTTCTTTATT
1 TTTCTTTATT
18050292 TGGTTTCCTT
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
14 2 0.06
15 32 0.91
16 1 0.03
ACGTcount: A:0.11, C:0.15, G:0.11, T:0.64
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:18052750 original size:46 final size:46
Alignment explanation
Indices: 18052683--18052810 Score: 220
Period size: 46 Copynumber: 2.8 Consensus size: 46
18052673 TATTTGGGCA
* *
18052683 TCCGAACTCGTTGAGTTGAGTCCGAGTACACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
18052729 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* *
18052775 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATG
18052811 AGCGGGTTAC
Statistics
Matches: 78, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
46 78 1.00
ACGTcount: A:0.21, C:0.22, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:18052942 original size:21 final size:21
Alignment explanation
Indices: 18052917--18052960 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
18052907 CTACTAAAAT
18052917 GGAGGAATACTCGAGATGAAA
1 GGAGGAATACTCGAGATGAAA
18052938 GGAGGAATACTCGAGATGAAA
1 GGAGGAATACTCGAGATGAAA
18052959 GG
1 GG
18052961 GACGTATTGG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.41, C:0.09, G:0.36, T:0.14
Consensus pattern (21 bp):
GGAGGAATACTCGAGATGAAA
Found at i:18056322 original size:26 final size:26
Alignment explanation
Indices: 18056286--18056369 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
18056276 CATGAAATTC
18056286 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
18056312 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
18056338 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
18056364 TTATCA
1 TTATCA
18056370 ATTTGTATCA
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.37, C:0.25, G:0.05, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:18057756 original size:48 final size:48
Alignment explanation
Indices: 18057684--18057956 Score: 241
Period size: 48 Copynumber: 5.7 Consensus size: 48
18057674 TATGTCTGTC
* * * * *
18057684 AGTGTAAGAGCATGTCTGGGACATGGCATCGGCCACGATATGAGAGCC
1 AGTGTAAGACCATGTTTGGAACATGGCATCGGCCATGATATGAGAGCT
* * * *
18057732 AGTGCAAGACAATGTTTGGAACATGGCATCGGCAATG-TAATGAGAGCC
1 AGTGTAAGACCATGTTTGGAACATGGCATCGGCCATGAT-ATGAGAGCT
* ** * * *
18057780 AGTGTAAGACCATGTCTGGGGCATGGCATCAG-CATTGATATGTGCGCT
1 AGTGTAAGACCATGTTTGGAACATGGCATCGGCCA-TGATATGAGAGCT
* * ** * *
18057828 AGTGCAAGACCGTG-TCAGAGACATGGCATCGG-CATTGAGATGAGAGTT
1 AGTGTAAGACCATGTTTGGA-ACATGGCATCGGCCA-TGATATGAGAGCT
* * * *
18057876 AGAGTAAGACCATGTTTGGGACATGGCATCGGCC-TCGACATGTGAGCT
1 AGTGTAAGACCATGTTTGGAACATGGCATCGGCCAT-GATATGAGAGCT
18057924 AGTGTAAGACCATGTTTGGAACATGGCATCGGC
1 AGTGTAAGACCATGTTTGGAACATGGCATCGGC
18057957 AATTCACCCT
Statistics
Matches: 178, Mismatches: 40, Indels: 14
0.77 0.17 0.06
Matches are distributed among these distances:
47 4 0.02
48 170 0.96
49 4 0.02
ACGTcount: A:0.27, C:0.19, G:0.32, T:0.22
Consensus pattern (48 bp):
AGTGTAAGACCATGTTTGGAACATGGCATCGGCCATGATATGAGAGCT
Found at i:18057852 original size:96 final size:96
Alignment explanation
Indices: 18057683--18057959 Score: 335
Period size: 96 Copynumber: 2.9 Consensus size: 96
18057673 ATATGTCTGT
* * * *
18057683 CAGTGTAAGAGCATGTCTGGGACATGGCATCGGCCA-CGATATGAGAGCCAGTGCAAGACAATGT
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGG-CATCGATATGTGAGCTAGTGCAAGACCATGT
18057747 TTGGAACATGGCATCGGCAATGTA-ATGAGAGC
65 TTGGAACATGGCATCGGCAATG-AGATGAGAGC
* * * * *
18057779 CAGTGTAAGACCATGTCTGGGGCATGGCATCAGCATTGATATGTGCGCTAGTGCAAGACCGTG-T
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCGATATGTGAGCTAGTGCAAGACCATGTT
** * *
18057843 CAGAGACATGGCATCGGCATTGAGATGAGAGT
66 TGGA-ACATGGCATCGGCAATGAGATGAGAGC
* * * * * *
18057875 TAGAGTAAGACCATGTTTGGGACATGGCATCGGCCTCGACATGTGAGCTAGTGTAAGACCATGTT
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCGATATGTGAGCTAGTGCAAGACCATGTT
18057940 TGGAACATGGCATCGGCAAT
66 TGGAACATGGCATCGGCAAT
18057960 TCACCCTTTT
Statistics
Matches: 150, Mismatches: 27, Indels: 8
0.81 0.15 0.04
Matches are distributed among these distances:
95 6 0.04
96 141 0.94
97 3 0.02
ACGTcount: A:0.28, C:0.19, G:0.31, T:0.22
Consensus pattern (96 bp):
CAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCGATATGTGAGCTAGTGCAAGACCATGTT
TGGAACATGGCATCGGCAATGAGATGAGAGC
Found at i:18060093 original size:14 final size:14
Alignment explanation
Indices: 18060074--18060104 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
18060064 TACATATATC
18060074 AATTTTAAGACACA
1 AATTTTAAGACACA
18060088 AATTTTAAGACACA
1 AATTTTAAGACACA
18060102 AAT
1 AAT
18060105 GTTGATCAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.52, C:0.13, G:0.06, T:0.29
Consensus pattern (14 bp):
AATTTTAAGACACA
Found at i:18064249 original size:5 final size:5
Alignment explanation
Indices: 18064239--18064287 Score: 55
Period size: 5 Copynumber: 9.6 Consensus size: 5
18064229 ATCCTAAAAT
* *
18064239 AATAA AATAA AATAA TAAT-A AATAA TAATAA AACAA AACAA AATAA AAT
1 AATAA AATAA AATAA -AATAA AATAA -AATAA AATAA AATAA AATAA AAT
18064288 CTTCTATTTT
Statistics
Matches: 39, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
4 3 0.08
5 28 0.72
6 8 0.21
ACGTcount: A:0.76, C:0.04, G:0.00, T:0.20
Consensus pattern (5 bp):
AATAA
Found at i:18064251 original size:13 final size:13
Alignment explanation
Indices: 18064233--18064276 Score: 54
Period size: 13 Copynumber: 3.4 Consensus size: 13
18064223 AGCTTAATCC
18064233 TAAAATAATAAAA
1 TAAAATAATAAAA
18064246 TAAAATAATAATAA
1 TAAAATAATAA-AA
*
18064260 -ATAATAATAAAA
1 TAAAATAATAAAA
*
18064272 CAAAA
1 TAAAA
18064277 CAAAATAAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
12 2 0.07
13 23 0.85
14 2 0.07
ACGTcount: A:0.75, C:0.02, G:0.00, T:0.23
Consensus pattern (13 bp):
TAAAATAATAAAA
Found at i:18064287 original size:26 final size:26
Alignment explanation
Indices: 18064236--18064285 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
18064226 TTAATCCTAA
* *
18064236 AATAATAAAATAAAATAATAATAAAT
1 AATAATAAAACAAAACAATAATAAAT
18064262 AATAATAAAACAAAACAA-AATAAA
1 AATAATAAAACAAAACAATAATAAA
18064286 ATCTTCTATT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 6 0.27
26 16 0.73
ACGTcount: A:0.76, C:0.04, G:0.00, T:0.20
Consensus pattern (26 bp):
AATAATAAAACAAAACAATAATAAAT
Found at i:18074041 original size:60 final size:60
Alignment explanation
Indices: 18073948--18074067 Score: 222
Period size: 60 Copynumber: 2.0 Consensus size: 60
18073938 AAACCTTGGA
18073948 ATGCCATTTTCCTTCTTTGACCCACCATATTCGGTAATCCCAAGTATTTTTCTGGATATG
1 ATGCCATTTTCCTTCTTTGACCCACCATATTCGGTAATCCCAAGTATTTTTCTGGATATG
* *
18074008 ATGCCATTTTTCTTCTTTGACCCACCATGTTCGGTAATCCCAAGTATTTTTCTGGATATG
1 ATGCCATTTTCCTTCTTTGACCCACCATATTCGGTAATCCCAAGTATTTTTCTGGATATG
18074068 TCGAACAACG
Statistics
Matches: 58, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
60 58 1.00
ACGTcount: A:0.21, C:0.24, G:0.14, T:0.41
Consensus pattern (60 bp):
ATGCCATTTTCCTTCTTTGACCCACCATATTCGGTAATCCCAAGTATTTTTCTGGATATG
Found at i:18078671 original size:2 final size:2
Alignment explanation
Indices: 18078664--18078700 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
18078654 CAGGTTTTGC
18078664 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT C
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT C
18078701 ATATTTTCGA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.00, C:0.51, G:0.00, T:0.49
Consensus pattern (2 bp):
CT
Found at i:18094039 original size:40 final size:40
Alignment explanation
Indices: 18093995--18094183 Score: 292
Period size: 40 Copynumber: 4.7 Consensus size: 40
18093985 GCTACTCACT
**
18093995 CAAATGCCTTCGGGACTTAGCCCGG-ATATAGTAGTTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCA
18094035 CAAATGCCTTCGGGACTTAGCCCGG-ATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCA
*
18094075 CAAATGCCTTCGGGACTTAGCCCGGAATTTGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
* *
18094115 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
*
18094155 CAAATGCCTTCGGGACTTAGCTCGGAATT
1 CAAATGCCTTCGGGACTTAGCCCGGAATT
18094184 TGTCGCTATT
Statistics
Matches: 141, Mismatches: 7, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
40 139 0.99
41 2 0.01
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
Found at i:18094114 original size:80 final size:79
Alignment explanation
Indices: 18093976--18094186 Score: 300
Period size: 80 Copynumber: 2.6 Consensus size: 79
18093966 TGGGATTTAA
* * * **
18093976 CCGGATATAGCTACTCACTCAAATGCCTTCGGGACTTAGCCCGG-ATATAGTAGTTCGCACAAAT
1 CCGGATATAG-TACTCGCACAAATGCCTTCGGGACTTAGCCCGGAAT-TTGTAACTCGCACAAAT
18094040 GCCTTCGGGACTTAGC
64 GCCTTCGGGACTTAGC
18094056 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTTGTAACTCGCACAAATG
1 CCGGATATAGT-ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTTGTAACTCGCACAAATG
18094121 CCTTCGGGACTTAGC
65 CCTTCGGGACTTAGC
* *
18094136 CCGGA-ATTAGTCACTAGCACAAATGCCTTCGGGACTTAGCTCGGAATTTGT
1 CCGGATA-TAGT-ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTTGT
18094187 CGCTATTAAG
Statistics
Matches: 120, Mismatches: 8, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
79 2 0.02
80 116 0.97
81 2 0.02
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.25
Consensus pattern (79 bp):
CCGGATATAGTACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTTGTAACTCGCACAAATGC
CTTCGGGACTTAGC
Found at i:18101599 original size:40 final size:40
Alignment explanation
Indices: 18101548--18101742 Score: 297
Period size: 40 Copynumber: 4.9 Consensus size: 40
18101538 AGATATAGCT
*
18101548 ACTCGCTCAAATGCCTTCGGGACTTAGCCCGG-ATATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTA
**
18101588 GTTCGCACAAATGCCTTCGGGACTTAGCCCGG-ATATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTA
*
18101628 ACTCGCACAAATACCTTCGGGACTTAGCCCGGAATTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
*
18101668 ACTCGCACAAATGCCTTC-GGACTTAGCCCGGAATTAGTC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
*
18101707 ACTAGCACAAATGCCTTCGGGACTTAGCCCGGAATT
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATT
18101743 TGTCGCTATT
Statistics
Matches: 144, Mismatches: 9, Indels: 4
0.92 0.06 0.03
Matches are distributed among these distances:
39 37 0.26
40 105 0.73
41 2 0.01
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
Found at i:18101674 original size:80 final size:79
Alignment explanation
Indices: 18101522--18101742 Score: 297
Period size: 79 Copynumber: 2.8 Consensus size: 79
18101512 AAACCAAGTA
* * * *
18101522 CCTTCGGGATTTA-ACCAGATATAGCTACTCGCTCAAATGCCTTCGGGACTTAGCCCGG-ATATA
1 CCTTCGGGACTTAGCCCGGATATAG-TACTCGCACAAATGCCTTCGGGACTTAGCCCGGAAT-TA
**
18101585 GTAGTTCGCACAAATG
64 GTAACTCGCACAAATG
*
18101601 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATACCTTCGGGACTTAGCCCGGAATTAG
1 CCTTCGGGACTTAGCCCGGATATAGT-ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAG
18101666 TAACTCGCACAAATG
65 TAACTCGCACAAATG
*
18101681 CCTTC-GGACTTAGCCCGGA-ATTAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGAATT
1 CCTTCGGGACTTAGCCCGGATA-TAGT-ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATT
18101743 TGTCGCTATT
Statistics
Matches: 128, Mismatches: 10, Indels: 8
0.88 0.07 0.05
Matches are distributed among these distances:
78 1 0.01
79 65 0.51
80 60 0.47
81 2 0.02
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (79 bp):
CCTTCGGGACTTAGCCCGGATATAGTACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGT
AACTCGCACAAATG
Found at i:18104020 original size:21 final size:20
Alignment explanation
Indices: 18103992--18104040 Score: 64
Period size: 21 Copynumber: 2.4 Consensus size: 20
18103982 ATGTGTATTT
18103992 TGAAGTTTCTTGATAGATTA
1 TGAAGTTTCTTGATAGATTA
*
18104012 TGAATGTTTGTTGATAGATATA
1 TGAA-GTTTCTTGATAGAT-TA
18104034 T-AAGTTT
1 TGAAGTTT
18104041 TGTAAAGTGA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
20 8 0.31
21 15 0.58
22 3 0.12
ACGTcount: A:0.31, C:0.02, G:0.20, T:0.47
Consensus pattern (20 bp):
TGAAGTTTCTTGATAGATTA
Found at i:18104527 original size:40 final size:40
Alignment explanation
Indices: 18104477--18104585 Score: 173
Period size: 40 Copynumber: 2.7 Consensus size: 40
18104467 TTGACAACAA
*
18104477 TTCGACTATATATGGCACTTAGTGTGCGATTCGAGATAGC
1 TTCGGCTATATATGGCACTTAGTGTGCGATTCGAGATAGC
* *
18104517 TTCGGCTATATATGGCACTTAGTGTGCGATTTGGGATAGC
1 TTCGGCTATATATGGCACTTAGTGTGCGATTCGAGATAGC
* *
18104557 TTCAGCTATATATGGCACTTAATGTGCGA
1 TTCGGCTATATATGGCACTTAGTGTGCGA
18104586 GATTAAAATA
Statistics
Matches: 64, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 64 1.00
ACGTcount: A:0.24, C:0.17, G:0.26, T:0.34
Consensus pattern (40 bp):
TTCGGCTATATATGGCACTTAGTGTGCGATTCGAGATAGC
Found at i:18106751 original size:40 final size:40
Alignment explanation
Indices: 18106705--18106843 Score: 160
Period size: 40 Copynumber: 3.5 Consensus size: 40
18106695 GACTAGCTCA
18106705 AATGCCTTCGGGAC-AAACCCCGGTTATAGTAACTCGCACG
1 AATGCCTTCGGGACTAAACCCCGGTT-TAGTAACTCGCACG
* *
18106745 AATGCCTTCGGGACTTAACCCGGGTTTAGTAACTCGCACG
1 AATGCCTTCGGGACTAAACCCCGGTTTAGTAACTCGCACG
* * * * *
18106785 AATGCCTTCGGG-CTTAA-CCCGAATTTATTAACTAGCACA
1 AATGCCTTCGGGACTAAACCCCG-GTTTAGTAACTCGCACG
*
18106824 AATGCCTTCGGG-CTTAACCC
1 AATGCCTTCGGGACTAAACCC
18106844 AGATTTATTA
Statistics
Matches: 89, Mismatches: 7, Indels: 6
0.87 0.07 0.06
Matches are distributed among these distances:
38 3 0.03
39 35 0.39
40 42 0.47
41 9 0.10
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTAAACCCCGGTTTAGTAACTCGCACG
Found at i:18106817 original size:39 final size:39
Alignment explanation
Indices: 18106734--18106855 Score: 174
Period size: 39 Copynumber: 3.1 Consensus size: 39
18106724 CCGGTTATAG
** *
18106734 TAACTCGCACGAATGCCTTCGGGACTTAACCCGGGTTTAG
1 TAACTCGCACGAATGCCTTCGGG-CTTAACCCGAATTTAT
18106774 TAACTCGCACGAATGCCTTCGGGCTTAACCCGAATTTAT
1 TAACTCGCACGAATGCCTTCGGGCTTAACCCGAATTTAT
* *
18106813 TAACTAGCACAAATGCCTTCGGGCTTAACCC-AGATTTAT
1 TAACTCGCACGAATGCCTTCGGGCTTAACCCGA-ATTTAT
18106852 TAAC
1 TAAC
18106856 GAACGCCTTC
Statistics
Matches: 76, Mismatches: 5, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
38 1 0.01
39 52 0.68
40 23 0.30
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (39 bp):
TAACTCGCACGAATGCCTTCGGGCTTAACCCGAATTTAT
Found at i:18111457 original size:47 final size:47
Alignment explanation
Indices: 18111403--18111734 Score: 468
Period size: 47 Copynumber: 7.1 Consensus size: 47
18111393 TTAGGATTTT
** * * **
18111403 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGAAA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
18111450 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCAAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
18111497 ATGTGATGAATGTGAAGATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
18111544 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
18111591 ATGTGATGAATGTGAATATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
18111638 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCAGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * * * *
18111685 ATGTGATGAACGTGGAA-GTGTATATATGTGGTAAAGCTGAATGGCTA
1 ATGTGATGAATGT-GAACATGCATATATGTGATAAGGCCGAATGGCCA
18111732 ATG
1 ATG
18111735 CGAAATGTGT
Statistics
Matches: 262, Mismatches: 22, Indels: 2
0.92 0.08 0.01
Matches are distributed among these distances:
47 259 0.99
48 3 0.01
ACGTcount: A:0.35, C:0.10, G:0.29, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:18111550 original size:22 final size:22
Alignment explanation
Indices: 18111523--18111644 Score: 72
Period size: 22 Copynumber: 5.3 Consensus size: 22
18111513 GATGCATATG
18111523 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
* *
18111545 TGTGATGAATG-TGAACAT-G-CATA
1 TGTGAT-AAGGCCG-A-ATGGCCA-A
18111568 TGTGTGATAAGGCCGAATGGCCAA
1 --TGTGATAAGGCCGAATGGCCAA
* * * *
18111592 TGTGATGAATG-TGAATATGCATATA
1 TGTGAT-AAGGCCGAAT-GGC-CA-A
18111617 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
18111639 TGTGAT
1 TGTGAT
18111645 GAATGTGAAC
Statistics
Matches: 74, Mismatches: 12, Indels: 28
0.65 0.11 0.25
Matches are distributed among these distances:
22 26 0.35
23 14 0.19
24 14 0.19
25 20 0.27
ACGTcount: A:0.32, C:0.12, G:0.30, T:0.26
Consensus pattern (22 bp):
TGTGATAAGGCCGAATGGCCAA
Found at i:18111691 original size:22 final size:22
Alignment explanation
Indices: 18111570--18111691 Score: 63
Period size: 22 Copynumber: 5.3 Consensus size: 22
18111560 CATGCATATG
*
18111570 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCAGAATGGCCAA
* * * *
18111592 TGTGATGAATG-TGAATATGCATATA
1 TGTGAT-AAGGCAGAAT-GGC-CA-A
*
18111617 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCAGAATGGCCAA
*
18111639 TGTGATGAATGTG-A-ACAT-GCATATA
1 TGTGAT-AA-G-GCAGA-ATGGC-CA-A
18111664 TGTGATAAGGCAGAATGGCCAA
1 TGTGATAAGGCAGAATGGCCAA
18111686 TGTGAT
1 TGTGAT
18111692 GAACGTGGAA
Statistics
Matches: 75, Mismatches: 11, Indels: 28
0.66 0.10 0.25
Matches are distributed among these distances:
22 25 0.33
23 16 0.21
24 15 0.20
25 19 0.25
ACGTcount: A:0.34, C:0.11, G:0.29, T:0.26
Consensus pattern (22 bp):
TGTGATAAGGCAGAATGGCCAA
Found at i:18111764 original size:46 final size:46
Alignment explanation
Indices: 18111708--18111890 Score: 267
Period size: 46 Copynumber: 4.0 Consensus size: 46
18111698 GGAAGTGTAT
* * *
18111708 ATATGTGGTAAAGCTGAATGGCTAATGCGAAATGTGTATGAGATGG
1 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
*
18111754 ATATGAGGTAAAGCCGAATAGCTAATGCGAAACGTGTATGAGATGG
1 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
*
18111800 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGCGATGG
1 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
* * * * **
18111846 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTATGAGATG
1 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATG
18111891 TGTATATATA
Statistics
Matches: 124, Mismatches: 13, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
46 124 1.00
ACGTcount: A:0.34, C:0.09, G:0.31, T:0.25
Consensus pattern (46 bp):
ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
Found at i:18115617 original size:49 final size:49
Alignment explanation
Indices: 18115544--18115712 Score: 248
Period size: 49 Copynumber: 3.4 Consensus size: 49
18115534 TGAGGTCACG
* *
18115544 TGTGTAGTACTAAGTGCAGACTACTACGTGTACCAGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAATTGGTCGCA
* ** * *
18115593 TGTGTAATACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAATT-GGTCGCA
* *
18115643 TGTGTAGTACTAAGTGCAAGCTACTACGTGTATCAGATAATTTGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAATTGGTCGCA
18115692 TGTGTAGTACTAAGTGCAGGC
1 TGTGTAGTACTAAGTGCAGGC
18115713 AACTGAGTAT
Statistics
Matches: 104, Mismatches: 15, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
49 61 0.59
50 43 0.41
ACGTcount: A:0.27, C:0.17, G:0.26, T:0.30
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAATTGGTCGCA
Found at i:18117350 original size:22 final size:22
Alignment explanation
Indices: 18117322--18117365 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
18117312 TCAAATTTGT
18117322 GCTAAATACATTTTCTTTTCCC
1 GCTAAATACATTTTCTTTTCCC
* * *
18117344 GCTAAATGCCTTTTGTTTTCCC
1 GCTAAATACATTTTCTTTTCCC
18117366 TTGTCAGACC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.18, C:0.27, G:0.09, T:0.45
Consensus pattern (22 bp):
GCTAAATACATTTTCTTTTCCC
Found at i:18121309 original size:43 final size:42
Alignment explanation
Indices: 18121157--18121311 Score: 140
Period size: 43 Copynumber: 3.7 Consensus size: 42
18121147 TATATCAACA
*
18121157 ATGCCAACGTCCCAGACGTGGTCTTACATGCT-ATCTCATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACATG-TAATCACA-ATCG
* * *
18121200 ATGCC-ACTGTCCAAGATAG-GGTCTTACACG-AATCA-AATACG
1 ATGCCAAC-GTCCCAGA-CGTGGTCTTACATGTAATCACAAT-CG
* * * *
18121241 ATACCGATGTCCCAGACATGGTCTTACATGTAATCACAGATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCACA-ATCG
*
18121284 ATGCCAACGTCCTAGACGTGGTCTTACA
1 ATGCCAACGTCCCAGACGTGGTCTTACA
18121312 CGAAAACACA
Statistics
Matches: 88, Mismatches: 15, Indels: 18
0.73 0.12 0.15
Matches are distributed among these distances:
40 2 0.02
41 24 0.27
42 11 0.12
43 48 0.55
44 3 0.03
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.25
Consensus pattern (42 bp):
ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCACAATCG
Found at i:18126781 original size:30 final size:30
Alignment explanation
Indices: 18126745--18126805 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
18126735 AGGGGGAGAG
18126745 ATAACTATCTTGGTTTCATGTACAATCTAA
1 ATAACTATCTTGGTTTCATGTACAATCTAA
18126775 ATAACTATCTTGGTTTCATGTACAATCTAA
1 ATAACTATCTTGGTTTCATGTACAATCTAA
18126805 A
1 A
18126806 AATTGAAGAG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.34, C:0.16, G:0.10, T:0.39
Consensus pattern (30 bp):
ATAACTATCTTGGTTTCATGTACAATCTAA
Found at i:18128380 original size:46 final size:46
Alignment explanation
Indices: 18128275--18128399 Score: 144
Period size: 46 Copynumber: 2.7 Consensus size: 46
18128265 GGTCATTTGT
* * *
18128275 GAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGAC
1 GAGAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGACATCGAGAC
* * * *
18128323 GAGTGCTAGTGTAAGACATGTCTAGGACATGCATCGACCTCGAGAC
1 GAGAGCCAGTGTAAGACATGTCTGGGACATGCATCGACATCGAGAC
*
18128369 GTA-AGCCAGTGTAAGACATGTTTGGGACATG
1 G-AGAGCCAGTGTAAGACATGTCTGGGACATG
18128400 TGTCAACTAC
Statistics
Matches: 67, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
46 38 0.57
47 14 0.21
48 15 0.22
ACGTcount: A:0.28, C:0.18, G:0.31, T:0.22
Consensus pattern (46 bp):
GAGAGCCAGTGTAAGACATGTCTGGGACATGCATCGACATCGAGAC
Found at i:18132545 original size:13 final size:14
Alignment explanation
Indices: 18132520--18132552 Score: 52
Period size: 13 Copynumber: 2.5 Consensus size: 14
18132510 TTCATTAAGG
18132520 CTAAT-TTAGTAAA
1 CTAATATTAGTAAA
18132533 CTAATATTA-TAAA
1 CTAATATTAGTAAA
18132546 CTAATAT
1 CTAATAT
18132553 AATATAAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 16 0.84
14 3 0.16
ACGTcount: A:0.48, C:0.09, G:0.03, T:0.39
Consensus pattern (14 bp):
CTAATATTAGTAAA
Found at i:18143108 original size:40 final size:40
Alignment explanation
Indices: 18143049--18143179 Score: 172
Period size: 40 Copynumber: 3.3 Consensus size: 40
18143039 CGGGACTTTA
* * *
18143049 CCCGGATATCACGATTTGCACAAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* *
18143089 CCCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * * * *
18143129 CCCGGATATAGCTACTAGCACAATTGCCTTCGGGTCTTAA
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
18143169 CCCGGATATAA
1 CCCGGATATAA
18143180 TTTCAGCATA
Statistics
Matches: 78, Mismatches: 13, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 78 1.00
ACGTcount: A:0.24, C:0.27, G:0.21, T:0.27
Consensus pattern (40 bp):
CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
Found at i:18143212 original size:39 final size:40
Alignment explanation
Indices: 18143066--18143216 Score: 180
Period size: 40 Copynumber: 3.8 Consensus size: 40
18143056 ATCACGATTT
* * * *
18143066 GCACAAATGCCTTCGGGTCTTAGCCCGGATTTAACAACTT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACTACTA
*
18143106 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAGCTACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAACTACTA
* * *
18143146 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-A
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACTACTA
* * *
18143185 GCATAATTGTCTTCGGGGCTTAGCCCGGATAT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
18143217 CATTCAATTT
Statistics
Matches: 97, Mismatches: 12, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
39 31 0.32
40 64 0.66
41 2 0.02
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.28
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACTACTA
Found at i:18147065 original size:46 final size:46
Alignment explanation
Indices: 18147015--18147190 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
18147005 TGGTTGAGCA
18147015 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
18147061 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
18147106 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
18147154 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
18147191 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:18147171 original size:93 final size:93
Alignment explanation
Indices: 18147012--18147183 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
18147002 GGATGGTTGA
* *
18147012 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
18147077 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
18147105 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
18147170 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
18147184 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:18154619 original size:46 final size:46
Alignment explanation
Indices: 18154569--18154744 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
18154559 TGGTTGAGCA
18154569 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
18154615 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
18154660 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
18154708 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
18154745 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:18154725 original size:93 final size:93
Alignment explanation
Indices: 18154566--18154737 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
18154556 GGATGGTTGA
* *
18154566 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
18154631 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
18154659 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
18154724 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
18154738 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:18156349 original size:27 final size:27
Alignment explanation
Indices: 18156329--18156669 Score: 387
Period size: 27 Copynumber: 12.6 Consensus size: 27
18156319 AGGGTATTTT
*
18156329 AGTAATTTTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
18156356 AGTAATTCTGTAAATCAAGGGTGAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
18156383 AGTAATTCTATAAATCGAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
18156410 GGTAATTCTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
18156437 GGTAATTCTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
18156464 -GATAATTATGTAAATCGATGGTAAAAC
1 AG-TAATTCTGTAAATCGAGGGTAAAAC
* * * *
18156491 GGTAATTATGTAAATTGGGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* * *
18156518 GGTAATTCTGTAAATTGAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
18156545 AGTAATTCTGTAAATTGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
18156572 AGTAATTCTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* * * ** *
18156599 GGTATTTTTACAAATTGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* * * ** *
18156626 GGTATTTTTACAAATTGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
18156653 GGTAATTTTGTAAATCG
1 AGTAATTCTGTAAATCG
18156670 GGAGTACTTT
Statistics
Matches: 281, Mismatches: 31, Indels: 4
0.89 0.10 0.01
Matches are distributed among these distances:
26 1 0.00
27 279 0.99
28 1 0.00
ACGTcount: A:0.39, C:0.08, G:0.23, T:0.30
Consensus pattern (27 bp):
AGTAATTCTGTAAATCGAGGGTAAAAC
Found at i:18164293 original size:24 final size:24
Alignment explanation
Indices: 18164266--18164452 Score: 338
Period size: 24 Copynumber: 7.8 Consensus size: 24
18164256 CTTATTATGT
**
18164266 TCGCACACATAGTGCCATAGCGAA
1 TCGCACACATAGTGCCATAGTAAA
18164290 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
18164314 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
18164338 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
18164362 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
**
18164386 TCGCACACATAGTGCCATAGTGGA
1 TCGCACACATAGTGCCATAGTAAA
18164410 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
18164434 TCGCACACATAGTGCCATA
1 TCGCACACATAGTGCCATA
18164453 TATTTCCAGC
Statistics
Matches: 157, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 157 1.00
ACGTcount: A:0.35, C:0.26, G:0.18, T:0.20
Consensus pattern (24 bp):
TCGCACACATAGTGCCATAGTAAA
Found at i:18167542 original size:17 final size:18
Alignment explanation
Indices: 18167509--18167542 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
18167499 AACTAGTTAA
*
18167509 CTTCATATATGCACTTTC
1 CTTCATACATGCACTTTC
18167527 CTTCATACAT-CACTTT
1 CTTCATACATGCACTTT
18167543 ACCTAAATCA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.24, C:0.29, G:0.03, T:0.44
Consensus pattern (18 bp):
CTTCATACATGCACTTTC
Found at i:18167997 original size:25 final size:25
Alignment explanation
Indices: 18167969--18168020 Score: 95
Period size: 25 Copynumber: 2.1 Consensus size: 25
18167959 TTAATGCAAT
18167969 TAAACATATCATAAATAATTTCATA
1 TAAACATATCATAAATAATTTCATA
*
18167994 TAAACATATCATTAATAATTTCATA
1 TAAACATATCATAAATAATTTCATA
18168019 TA
1 TA
18168021 GTTCCACAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.50, C:0.12, G:0.00, T:0.38
Consensus pattern (25 bp):
TAAACATATCATAAATAATTTCATA
Found at i:18179510 original size:53 final size:54
Alignment explanation
Indices: 18179429--18179744 Score: 318
Period size: 53 Copynumber: 5.9 Consensus size: 54
18179419 TTTTCTTTTT
* * *
18179429 GAACTTACCATTGCCATGTCTTGACATGGTCTTA-AGTGGTATCCTTGCCTTAT-
1 GAACTCACCAATGCCATGCCTTGACATGGTCTTACA-TGGTATCCTTGCCTTATA
* *
18179482 GAACTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATA
1 GAACTCACCAATGCCATGCCTTGACATGGTCTTACATGGTATCC-TTGCCTTATA
* * *
18179536 GTAACTCATCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCTTTAT-
1 G-AACTCACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATA
* * * * *
18179590 GAACTCACCAATGTCATGCATTGGCATGGTCTTACATGGGA-CCTTTGCGTTATA
1 GAACTCACCAATGCCATGCCTTGACATGGTCTTACATGGTATCC-TTGCCTTATA
** ** * * *
18179644 GTAACTCATTAATGCCATATCTTGACATGGTCTTACATGATTTCCTTGCATTATA
1 G-AACTCACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATA
* * * ** *
18179699 GAACTTATCAATACCATGCCTTGGTATGGTCTTACATGATATCCTT
1 GAACTCACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTT
18179745 ATCTTACCAA
Statistics
Matches: 218, Mismatches: 36, Indels: 17
0.80 0.13 0.06
Matches are distributed among these distances:
52 4 0.02
53 85 0.39
54 41 0.19
55 84 0.39
56 4 0.02
ACGTcount: A:0.24, C:0.23, G:0.18, T:0.36
Consensus pattern (54 bp):
GAACTCACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATA
Found at i:18179565 original size:55 final size:53
Alignment explanation
Indices: 18179440--18179736 Score: 305
Period size: 55 Copynumber: 5.5 Consensus size: 53
18179430 AACTTACCAT
*
18179440 TGCCATGTCTTGACATGGTCTTA-AGTGGTATCCTTGCCTTAT-GAACTCACCAA
1 TGCCATGTCTTGACATGGTCTTACA-TGGTA-CCTTGCCTTATAGAACTCATCAA
* * *
18179493 TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGTAACTCATCAA
1 TGCCATGTCTTGACATGGTCTTACATGGTACC-TTGCCTTATAG-AACTCATCAA
* *
18179548 TGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCTTTAT-GAACTCACCAA
1 TGCCATGTCTTGACATGGTCTTACATGGTA-CCTTGCCTTATAGAACTCATCAA
* * * * *
18179601 TGTCATG-CATTGGCATGGTCTTACATGGGACCTTTGCGTTATAGTAACTCATTAA
1 TGCCATGTC-TTGACATGGTCTTACATGGTACC-TTGCCTTATAG-AACTCATCAA
* * * * *
18179656 TGCCATATCTTGACATGGTCTTACATGATTTCCTTGCATTATAGAACTTATCAA
1 TGCCATGTCTTGACATGGTCTTACATG-GTACCTTGCCTTATAGAACTCATCAA
* * **
18179710 TACCATGCCTTGGTATGGTCTTACATG
1 TGCCATGTCTTGACATGGTCTTACATG
18179737 ATATCCTTAT
Statistics
Matches: 204, Mismatches: 29, Indels: 21
0.80 0.11 0.08
Matches are distributed among these distances:
52 5 0.02
53 76 0.37
54 34 0.17
55 84 0.41
56 5 0.02
ACGTcount: A:0.23, C:0.23, G:0.19, T:0.36
Consensus pattern (53 bp):
TGCCATGTCTTGACATGGTCTTACATGGTACCTTGCCTTATAGAACTCATCAA
Found at i:18179629 original size:108 final size:108
Alignment explanation
Indices: 18179440--18179736 Score: 452
Period size: 108 Copynumber: 2.7 Consensus size: 108
18179430 AACTTACCAT
*
18179440 TGCCATGTCTTGACATGGTCTTA-AGTGGTATCCTTGCCTTATGAACTCACCAATGCCATGCCTT
1 TGCCATGTCTTGACATGGTCTTACA-TGGTATCCTTGCATTATGAACTCACCAATGCCATGCCTT
18179504 GGCATGGTCTTACATGGGACCTTTGCCTTATAGTAACTCATCAA
65 GGCATGGTCTTACATGGGACCTTTGCCTTATAGTAACTCATCAA
* * *
18179548 TGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCTTTATGAACTCACCAATGTCATGCATTG
1 TGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCATTATGAACTCACCAATGCCATGCCTTG
* *
18179613 GCATGGTCTTACATGGGACCTTTGCGTTATAGTAACTCATTAA
66 GCATGGTCTTACATGGGACCTTTGCCTTATAGTAACTCATCAA
* * * * * *
18179656 TGCCATATCTTGACATGGTCTTACATGATTTCCTTGCATTATAGAACTTATCAATACCATGCCTT
1 TGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCATTAT-GAACTCACCAATGCCATGCCTT
*
18179721 GGTATGGTCTTACATG
65 GGCATGGTCTTACATG
18179737 ATATCCTTAT
Statistics
Matches: 172, Mismatches: 15, Indels: 3
0.91 0.08 0.02
Matches are distributed among these distances:
108 139 0.81
109 33 0.19
ACGTcount: A:0.23, C:0.23, G:0.19, T:0.36
Consensus pattern (108 bp):
TGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCATTATGAACTCACCAATGCCATGCCTTG
GCATGGTCTTACATGGGACCTTTGCCTTATAGTAACTCATCAA
Found at i:18179797 original size:47 final size:47
Alignment explanation
Indices: 18179724--18179844 Score: 197
Period size: 47 Copynumber: 2.6 Consensus size: 47
18179714 ATGCCTTGGT
* * * *
18179724 ATGGTCTTACATGATATCCTTATCTTACCAAATGTCATGTTCCAAAC
1 ATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCAAAAC
*
18179771 ATGGTCTTCCATGGTATCCTTGTCTTACCAAATGCCATGTTCAAAAC
1 ATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCAAAAC
18179818 ATGGTCTTACATGGTATCCTTGTCTTA
1 ATGGTCTTACATGGTATCCTTGTCTTA
18179845 GTGCCAATGC
Statistics
Matches: 68, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 68 1.00
ACGTcount: A:0.26, C:0.23, G:0.14, T:0.37
Consensus pattern (47 bp):
ATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCAAAAC
Found at i:18182455 original size:48 final size:45
Alignment explanation
Indices: 18182346--18182520 Score: 160
Period size: 49 Copynumber: 3.7 Consensus size: 45
18182336 TGGGTAAAGT
* * *
18182346 GCCGATGCCATATCCCAGACATGGTCTTACACTGGCTATCATCTTCG-A
1 GCCGATGCCATGTCCCAGACAT-GTCTTACACTGAC-A-CATATT-GTA
* *
18182394 GGCTGATGCCATGTCCCAGACA-GTCTTACACTAGCTCTCACATAATTGT-
1 -GCCGATGCCATGTCCCAGACATGTCTTACACT-G---ACACAT-ATTGTA
*
18182443 GCCGATGCCATGTCCCAGACATGGTCTTACACTGACACATCTTGTA
1 GCCGATGCCATGTCCCAGACAT-GTCTTACACTGACACATATTGTA
*
18182489 GCCGATG-CATGTCCCAGACATGTCTTATACTG
1 GCCGATGCCATGTCCCAGACATGTCTTACACTG
18182521 GCTTACGTCC
Statistics
Matches: 109, Mismatches: 8, Indels: 23
0.78 0.06 0.16
Matches are distributed among these distances:
44 10 0.09
45 18 0.17
46 12 0.11
47 10 0.09
48 21 0.19
49 24 0.22
50 13 0.12
51 1 0.01
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.27
Consensus pattern (45 bp):
GCCGATGCCATGTCCCAGACATGTCTTACACTGACACATATTGTA
Found at i:18182610 original size:138 final size:142
Alignment explanation
Indices: 18182346--18182614 Score: 340
Period size: 138 Copynumber: 1.9 Consensus size: 142
18182336 TGGGTAAAGT
*
18182346 GCCGATGCCATATCCCAGACATGGTCTTACACTGGCTATCATCTTCGAGGCTGATGCCATGTCCC
1 GCCGATGCCATATCCCAGACATGGTCTTACACTGGCTATCATCTCCGAGGCTGATGCCATGTCCC
* *
18182411 AGACAGTCTTACACTAGCTCTCACATAATTGTGCCGATGCCATGTCCCAGACATGGTCTTACACT
66 AGACAGCCTTACACTAGCACTCACATAATTGT-CCGATGCCATGTCCCAGACATGGTCTTACACT
18182476 GACACATCTTGTA
130 GACACATCTTGTA
* * *
18182489 GCCGATG-CATGTCCCAGACAT-GTCTTATACTGGCT-TACGTC-CCGAGGCTGATG-CATGTCC
1 GCCGATGCCATATCCCAGACATGGTCTTACACTGGCTAT-CATCTCCGAGGCTGATGCCATGTCC
* * *
18182549 TAGACATGCCTTACACTAGCACT-AGTC-TCAA-TGT-CGATGCCATGTTCCATACATGGTCTTA
65 CAGACA-GCCTTACACTAGCACTCA--CAT-AATTGTCCGATGCCATGTCCCAGACATGGTCTTA
18182610 CACTG
126 CACTG
18182615 GCTCTCATAA
Statistics
Matches: 112, Mismatches: 9, Indels: 15
0.82 0.07 0.11
Matches are distributed among these distances:
138 30 0.27
139 13 0.12
140 30 0.27
141 19 0.17
142 13 0.12
143 7 0.06
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (142 bp):
GCCGATGCCATATCCCAGACATGGTCTTACACTGGCTATCATCTCCGAGGCTGATGCCATGTCCC
AGACAGCCTTACACTAGCACTCACATAATTGTCCGATGCCATGTCCCAGACATGGTCTTACACTG
ACACATCTTGTA
Found at i:18182641 original size:140 final size:140
Alignment explanation
Indices: 18182358--18182655 Score: 324
Period size: 140 Copynumber: 2.1 Consensus size: 140
18182348 CGATGCCATA
* *
18182358 TCCCAGACATGGTCTTACACTGGCTATCATCTTCGAGGCTGATGCCATGTCCCAGACAGTCTTAC
1 TCCCAGACAT-GTCTTACACTGGCTATCATCTCCGAGGCTGATGCCATGTCCCAGACAGCCTTAC
*
18182423 ACTAGCTCTCACATAATTGTGCCGATGCCATGTCCCAGACATGGTCTTACACTGACACATCTTGT
65 ACTAGCACTCACATAATTGT-CCGATGCCATGTCCCAGACATGGTCTTACACTGACACATCTTGT
*
18182488 AGCCGATGCATG
129 AGCCGATACATG
* * *
18182500 TCCCAGACATGTCTTATACTGGCT-TACGTC-CCGAGGCTGATG-CATGTCCTAGACATGCCTTA
1 TCCCAGACATGTCTTACACTGGCTAT-CATCTCCGAGGCTGATGCCATGTCCCAGACA-GCCTTA
* * * *
18182562 CACTAGCACT-AGTC-TCAA-TGT-CGATGCCATGTTCCATACATGGTCTTACACTGGCTC-TCA
64 CACTAGCACTCA--CAT-AATTGTCCGATGCCATGTCCCAGACATGGTCTTACACTGACACATC-
* * *
18182622 TAATGTGGTCGATATATG
125 T--TGTAGCCGATACATG
18182640 TCCCAGACATGTCTTA
1 TCCCAGACATGTCTTA
18182656 ACTAGCTCAC
Statistics
Matches: 134, Mismatches: 14, Indels: 18
0.81 0.08 0.11
Matches are distributed among these distances:
137 2 0.01
138 33 0.25
139 13 0.10
140 57 0.43
141 19 0.14
142 10 0.07
ACGTcount: A:0.23, C:0.28, G:0.19, T:0.29
Consensus pattern (140 bp):
TCCCAGACATGTCTTACACTGGCTATCATCTCCGAGGCTGATGCCATGTCCCAGACAGCCTTACA
CTAGCACTCACATAATTGTCCGATGCCATGTCCCAGACATGGTCTTACACTGACACATCTTGTAG
CCGATACATG
Found at i:18186878 original size:40 final size:39
Alignment explanation
Indices: 18186821--18187005 Score: 217
Period size: 40 Copynumber: 4.6 Consensus size: 39
18186811 ATTAAATGAT
* * *
18186821 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAGTTAA
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGT-GTTAA
* * * *
18186861 ATCCGGGTTAAGACCCGAAGGCAATTATGCTAGTGACTAA
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGTG-TTAA
**
18186901 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAA
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAG-TGTTAA
* * **
18186941 ATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTTCT
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGT-GTTAA
18186981 ATCCGGGCTAAGACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATT
18187006 CGTGCATGTG
Statistics
Matches: 126, Mismatches: 16, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
39 2 0.02
40 122 0.97
41 2 0.02
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.24
Consensus pattern (39 bp):
ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGTGTTAA
Found at i:18186957 original size:80 final size:80
Alignment explanation
Indices: 18186820--18187026 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 80
18186810 AATTAAATGA
* * ** * *
18186820 TATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAGTTAAATCCGGGTTAAGACCCGAAGGCAA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGCAA
*
18186885 TTATGCTAGT-G-AC
66 TTATGCAAGTCGTAC
* *
18186898 TAAATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGC
1 T--ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGC
* * *
18186963 ATTTGTGCAAGTCGTTC
64 AATTATGCAAGTCGTAC
* * *
18186980 TATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGG
18187027 TTGTATTCCG
Statistics
Matches: 110, Mismatches: 15, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
78 1 0.01
80 106 0.96
81 1 0.01
82 2 0.02
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (80 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGCAA
TTATGCAAGTCGTAC
Found at i:18187011 original size:40 final size:39
Alignment explanation
Indices: 18186819--18187026 Score: 211
Period size: 40 Copynumber: 5.2 Consensus size: 39
18186809 CAATTAAATG
* * ** *
18186819 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-GTT
* * * * *
18186859 AAATCCGGGTTAAGACCCGAAGGCAATT-ATGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTG-TT
*
18186899 AAATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAG-TGTT
* * *
18186939 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-GTT
* *
18186979 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-GTT
18187019 ATATCCGG
1 ATATCCGG
18187027 TTGTATTCCG
Statistics
Matches: 145, Mismatches: 18, Indels: 10
0.84 0.10 0.06
Matches are distributed among these distances:
39 5 0.03
40 135 0.93
41 5 0.03
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGTT
Found at i:18194918 original size:40 final size:39
Alignment explanation
Indices: 18194861--18195064 Score: 214
Period size: 40 Copynumber: 5.2 Consensus size: 39
18194851 ATTAAATGAT
* * * *
18194861 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAGTTAA
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGT-GTTAA
* * * *
18194901 ATCCGGGTTAAGACCCGAAGGCA-AT-TGCTAGTGACTAA
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTG-TTAA
*
18194939 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAA
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAG-TGTTAA
* **
18194979 ATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTTCT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGT-GTTAA
* * *
18195019 ATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGT-GTTAA
18195059 ATCCGG
1 ATCCGG
18195065 TTGTATTCCG
Statistics
Matches: 140, Mismatches: 19, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
37 1 0.01
38 32 0.23
39 2 0.01
40 103 0.74
41 2 0.01
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (39 bp):
ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTGTTAA
Found at i:18194995 original size:78 final size:80
Alignment explanation
Indices: 18194860--18195064 Score: 238
Period size: 78 Copynumber: 2.6 Consensus size: 80
18194850 AATTAAATGA
* * ** * *
18194860 TATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAGTTAAATCCGGGTTAAGACCCGAAGGCA-
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGCAT
*
18194924 AT-TGCTAGT-G-AC
66 ATGTGCAAGTCGTAC
* *
18194936 TAAATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGC
1 T--ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGC
* *
18195001 ATTTGTGCAAGTCGTTC
64 ATATGTGCAAGTCGTAC
* * *
18195018 TATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGG
18195065 TTGTATTCCG
Statistics
Matches: 109, Mismatches: 14, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
76 1 0.01
78 55 0.50
79 1 0.01
80 49 0.45
81 1 0.01
82 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.25
Consensus pattern (80 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGCAT
ATGTGCAAGTCGTAC
Found at i:18202947 original size:40 final size:40
Alignment explanation
Indices: 18202881--18203047 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
18202871 AAATTGAATG
* * *
18202881 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
18202920 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
18202960 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
18203000 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
18203040 ATATCCGG
1 ATATCCGG
18203048 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:18207437 original size:68 final size:67
Alignment explanation
Indices: 18207365--18207514 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
18207355 CATCATGTGT
* * * *
18207365 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
18207427 ATGTAG
62 ATGTAG
** * *
18207433 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
18207498 AG
66 AG
18207500 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
18207515 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:18207470 original size:64 final size:63
Alignment explanation
Indices: 18207389--18207571 Score: 192
Period size: 67 Copynumber: 2.8 Consensus size: 63
18207379 AGACATTATG
* *
18207389 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTG-TACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * *
18207453 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-G-TACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
18207518 AA
62 AA
* * *
18207520 ACTG--GCTAGGTCACATGGGTGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGTACTATGTGTACACCATGTAG-ACAAGAGAGC
18207572 CGAACTATAT
Statistics
Matches: 98, Mismatches: 16, Indels: 12
0.78 0.13 0.10
Matches are distributed among these distances:
61 1 0.01
62 19 0.19
63 1 0.01
64 23 0.23
65 5 0.05
66 16 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (63 bp):
ATGTAGCTAGGTCGCATGGGTGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:18211878 original size:68 final size:67
Alignment explanation
Indices: 18211806--18211955 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
18211796 CATCATGTGT
* * * *
18211806 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
18211868 ATGTAG
62 ATGTAG
** * *
18211874 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
18211939 AG
66 AG
18211941 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
18211956 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:18211911 original size:64 final size:64
Alignment explanation
Indices: 18211830--18212013 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
18211820 AGACATTATG
* *
18211830 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
18211894 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
18211959 AA
63 AA
* * * *
18211961 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
18212014 CGAACTATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 21 0.21
65 8 0.08
66 16 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:18219673 original size:9 final size:9
Alignment explanation
Indices: 18219661--18219717 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
18219651 TTTGATAAAC
18219661 ATGATATGT
1 ATGATATGT
*
18219670 ATGATATGCAC
1 ATGATATG--T
*
18219681 ATGACATGT
1 ATGATATGT
*
18219690 ATGATATGCAC
1 ATGATATG--T
18219701 ATGATATGT
1 ATGATATGT
18219710 ATGATATG
1 ATGATATG
18219718 CACATGAGAT
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:18219684 original size:20 final size:20
Alignment explanation
Indices: 18219659--18219729 Score: 124
Period size: 20 Copynumber: 3.5 Consensus size: 20
18219649 ATTTTGATAA
18219659 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
18219679 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
18219699 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
18219719 ACATGAGATGT
1 ACATGATATGT
18219730 TCATAAATGC
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.35, C:0.11, G:0.21, T:0.32
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:18219706 original size:11 final size:11
Alignment explanation
Indices: 18219670--18219724 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
18219660 CATGATATGT
18219670 ATGATATGCAC
1 ATGATATGCAC
* *
18219681 ATGACATG--T
1 ATGATATGCAC
18219690 ATGATATGCAC
1 ATGATATGCAC
*
18219701 ATGATATG--T
1 ATGATATGCAC
18219710 ATGATATGCAC
1 ATGATATGCAC
18219721 ATGA
1 ATGA
18219725 GATGTTCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.36, C:0.13, G:0.20, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:18219831 original size:24 final size:23
Alignment explanation
Indices: 18219775--18219964 Score: 274
Period size: 24 Copynumber: 8.0 Consensus size: 23
18219765 GAGGAAGTGC
18219775 AAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
*
18219798 GAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
18219821 CAAAAGGGCTTATGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
18219845 CAAAAGGGCTTATGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
*
18219869 TAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
*
18219892 TAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTA-T
*
18219916 AAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTA-T
*
18219940 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
18219964 A
1 A
18219965 TGATAAAGCA
Statistics
Matches: 156, Mismatches: 7, Indels: 7
0.92 0.04 0.04
Matches are distributed among these distances:
23 66 0.42
24 80 0.51
25 10 0.06
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.27
Consensus pattern (23 bp):
AAAAGGGCTTATGCCCCAGTTAT
Done.