Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr02 99090824
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 99090824
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 317 characters in sequence are not A, C, G, or T
File 71 of 318
Found at i:20612354 original size:23 final size:22
Alignment explanation
Indices: 20612307--20612352 Score: 76
Period size: 23 Copynumber: 2.1 Consensus size: 22
20612297 TTATTATGCC
20612307 AATTTTATAAATAAAAATAACA
1 AATTTTATAAATAAAAATAACA
20612329 AATTTATATAAATAAAAA-AACA
1 AATTT-TATAAATAAAAATAACA
20612351 AA
1 AA
20612353 ATAATTAAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
22 11 0.48
23 12 0.52
ACGTcount: A:0.67, C:0.04, G:0.00, T:0.28
Consensus pattern (22 bp):
AATTTTATAAATAAAAATAACA
Found at i:20615244 original size:42 final size:42
Alignment explanation
Indices: 20615185--20615270 Score: 172
Period size: 42 Copynumber: 2.0 Consensus size: 42
20615175 ATAAATGTAC
20615185 TAAATAAGATGTAAATACAAAATGAATTACAAAAGAAAATCA
1 TAAATAAGATGTAAATACAAAATGAATTACAAAAGAAAATCA
20615227 TAAATAAGATGTAAATACAAAATGAATTACAAAAGAAAATCA
1 TAAATAAGATGTAAATACAAAATGAATTACAAAAGAAAATCA
20615269 TA
1 TA
20615271 CTTTGTTTGA
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 44 1.00
ACGTcount: A:0.62, C:0.07, G:0.09, T:0.22
Consensus pattern (42 bp):
TAAATAAGATGTAAATACAAAATGAATTACAAAAGAAAATCA
Found at i:20615793 original size:19 final size:17
Alignment explanation
Indices: 20615763--20615797 Score: 52
Period size: 19 Copynumber: 1.9 Consensus size: 17
20615753 AATAATAATT
20615763 TAAATAATATAAATTAA
1 TAAATAATATAAATTAA
20615780 TAAATAATTCATAAATTA
1 TAAATAA-T-ATAAATTA
20615798 TTTTAAAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 7 0.44
18 1 0.06
19 8 0.50
ACGTcount: A:0.60, C:0.03, G:0.00, T:0.37
Consensus pattern (17 bp):
TAAATAATATAAATTAA
Found at i:20628746 original size:69 final size:69
Alignment explanation
Indices: 20628645--20628799 Score: 292
Period size: 69 Copynumber: 2.2 Consensus size: 69
20628635 GAGATGTATC
20628645 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGAC-A-AGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
20628710 AGGACA
64 AGGACA
20628716 CCATGTAGACAAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAG
1 CCATGTAGACAAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAG
20628781 GACA
66 GACA
20628785 CCATGTAGACAAGAG
1 CCATGTAGACAAGAG
20628800 AGCTACGAGA
Statistics
Matches: 84, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
69 73 0.87
70 1 0.01
71 10 0.12
ACGTcount: A:0.35, C:0.17, G:0.28, T:0.19
Consensus pattern (69 bp):
CCATGTAGACAAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAG
GACA
Found at i:20631477 original size:17 final size:18
Alignment explanation
Indices: 20631446--20631512 Score: 91
Period size: 17 Copynumber: 3.7 Consensus size: 18
20631436 TGATATCTTC
20631446 AAGATTGCATATCATATCT
1 AAGATTGC-TATCATATCT
20631465 AAGATTG-TATCATATCT
1 AAGATTGCTATCATATCT
* *
20631482 AGGATTGCAATCATATCT
1 AAGATTGCTATCATATCT
20631500 AAGATTGCATATC
1 AAGATTGC-TATC
20631513 CTTAAAGATT
Statistics
Matches: 42, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
17 16 0.38
18 16 0.38
19 10 0.24
ACGTcount: A:0.36, C:0.15, G:0.13, T:0.36
Consensus pattern (18 bp):
AAGATTGCTATCATATCT
Found at i:20631496 original size:18 final size:18
Alignment explanation
Indices: 20631446--20631508 Score: 92
Period size: 18 Copynumber: 3.5 Consensus size: 18
20631436 TGATATCTTC
20631446 AAGATTGCATATCATATCT
1 AAGATTGCA-ATCATATCT
*
20631465 AAGATTG-TATCATATCT
1 AAGATTGCAATCATATCT
*
20631482 AGGATTGCAATCATATCT
1 AAGATTGCAATCATATCT
20631500 AAGATTGCA
1 AAGATTGCA
20631509 TATCCTTAAA
Statistics
Matches: 39, Mismatches: 4, Indels: 3
0.85 0.09 0.07
Matches are distributed among these distances:
17 15 0.38
18 17 0.44
19 7 0.18
ACGTcount: A:0.37, C:0.14, G:0.14, T:0.35
Consensus pattern (18 bp):
AAGATTGCAATCATATCT
Found at i:20634371 original size:49 final size:49
Alignment explanation
Indices: 20634306--20634969 Score: 516
Period size: 49 Copynumber: 14.1 Consensus size: 49
20634296 TGATAAGCCG
* * *
20634306 AATGGCCAATGCGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCT
1 AATGGCCGATGTGATGAATGTGAAAGTGTATGTATATGTGATGAGGCCT
*
20634355 AATGGCCGATGTGATGAATGTGAAAGTGGATGTATATGTGATGAGGCCT
1 AATGGCCGATGTGATGAATGTGAAAGTGTATGTATATGTGATGAGGCCT
*
20634404 AATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATGAGGCCT
1 AATGGCCGATGTGATGAATGTGAAAGTGTATGTATATGTGATGAGGCCT
* *
20634453 AATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCT
1 AATGGCCGATGTGATGAATGTGAAAGTGTATGTATATGTGATGAGGCCT
* **
20634502 AATGGCCGATGTGATGTATATGTG--A-TG-AGGCCTA----AT--GGCC-
1 AATGGCCGATGTGATG-A-ATGTGAAAGTGTATGTATATGTGATGAGGCCT
* ** * * * * * *
20634542 GATGTGGTGAATGTGA--AA-GTGTATGTATATGTGATGA-G-GCCTAATGCC-
1 AATG-GCCG-ATGTGATGAATGTGAAAGTGTATGT-AT-ATGTG-ATGAGGCCT
* ** * * * * *
20634590 GATGTGGTGAATGTGAAAGTGTATGT-ATA-TG--TG-ATAAG-GCCTAATGGCC-
1 AATG-GCCG-ATGTG--A-TGAATGTGAAAGTGTATGTATATGTG-ATGA-GGCCT
* ** * * * *
20634639 GATGTGGTGAATGTGA--AA-GTGTATGTATATGTG------ATGAGGCCT
1 AATG-GCCG-ATGTGATGAATGTGAAAGTGTATGTATATGTGATGAGGCCT
20634681 AAT----G--G---TGAATGTGAAAGTGTATGTATATGTGATGAGGCCT
1 AATGGCCGATGTGATGAATGTGAAAGTGTATGTATATGTGATGAGGCCT
*
20634721 AATGGCCGATGTGATGAATGTGAAAGTGGATGTATATGTGATGAGGCCT
1 AATGGCCGATGTGATGAATGTGAAAGTGTATGTATATGTGATGAGGCCT
*
20634770 AATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGT-ATGAGGCCT
1 AATGGCCGATGTGATGAATGTGAAAGTGTATGTATATGTGATGAGGCCT
*
20634818 AATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATGAGGCCT
1 AATGGCCGATGTGATGAATGTGAAAGTGTATGTATATGTGATGAGGCCT
*
20634867 AATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATGAGGCCT
1 AATGGCCGATGTGATGAATGTGAAAGTGTATGTATATGTGATGAGGCCT
* *
20634916 AATGG-CGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCT
1 AATGGCCGATGTGATGAATGTGAAAGTGTATGTATATGTGATGAGGCCT
20634964 AATGGC
1 AATGGC
20634970 TAATGTAAAA
Statistics
Matches: 522, Mismatches: 44, Indels: 98
0.79 0.07 0.15
Matches are distributed among these distances:
33 2 0.00
34 12 0.02
37 4 0.01
38 1 0.00
39 1 0.00
40 16 0.03
41 12 0.02
42 11 0.02
43 5 0.01
44 2 0.00
45 1 0.00
46 2 0.00
47 8 0.02
48 124 0.24
49 308 0.59
50 4 0.01
51 5 0.01
52 1 0.00
53 1 0.00
54 2 0.00
ACGTcount: A:0.28, C:0.08, G:0.33, T:0.30
Consensus pattern (49 bp):
AATGGCCGATGTGATGAATGTGAAAGTGTATGTATATGTGATGAGGCCT
Found at i:20634524 original size:33 final size:33
Alignment explanation
Indices: 20634482--20634547 Score: 123
Period size: 33 Copynumber: 2.0 Consensus size: 33
20634472 GTGAAAGTGT
20634482 ATGTATATGTGATAAGGCCTAATGGCCGATGTG
1 ATGTATATGTGATAAGGCCTAATGGCCGATGTG
*
20634515 ATGTATATGTGATGAGGCCTAATGGCCGATGTG
1 ATGTATATGTGATAAGGCCTAATGGCCGATGTG
20634548 GTGAATGTGA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.26, C:0.12, G:0.32, T:0.30
Consensus pattern (33 bp):
ATGTATATGTGATAAGGCCTAATGGCCGATGTG
Found at i:20634528 original size:82 final size:81
Alignment explanation
Indices: 20634433--20634595 Score: 308
Period size: 82 Copynumber: 2.0 Consensus size: 81
20634423 GTGAAAGTGT
20634433 ATGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAG
1 ATGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAG
20634498 GCCTAATGGCCGATGTG
66 GCCTAAT-GCCGATGTG
*
20634515 ATGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATGAG
1 ATGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAG
20634580 GCCTAATGCCGATGTG
66 GCCTAATGCCGATGTG
20634596 GTGAATGTGA
Statistics
Matches: 80, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
81 9 0.11
82 71 0.89
ACGTcount: A:0.26, C:0.10, G:0.33, T:0.31
Consensus pattern (81 bp):
ATGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAG
GCCTAATGCCGATGTG
Found at i:20634838 original size:235 final size:238
Alignment explanation
Indices: 20634514--20634969 Score: 812
Period size: 235 Copynumber: 1.9 Consensus size: 238
20634504 TGGCCGATGT
20634514 GATGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATGA
1 GATGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATGA
20634579 GGCCTAATGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGT
66 GGCCTAATGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGT
20634644 GGTGAATGTGAAAGTGTATGTATATGTGATGAGGCCT-A-A-TGGTGAATGTGAAAGTGTATGTA
131 GGTGAATGTGAAAGTGTATGTATATGTGATGAGGCCTAAGAGTGGTGAATGTGAAAGTGTATGTA
*
20634706 TATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
196 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
20634749 GATGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGT-ATGA
1 GATGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATGA
*
20634813 GGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATGAGGCCTAATGGCCGATG
66 GGCCTAAT-GCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATG
20634878 TGGTGAATGTGAAAGTGTATGTATATGTGATGAGGCCTAATGGCGATGTGGTGAATGTGAAAGTG
130 TGGTGAATGTGAAAGTGTATGTATATGTGATGAGGCCTAA----GA-GTGGTGAATGTGAAAGTG
20634943 TATGTATATGTGATAAGGCCTAATGGC
190 TATGTATATGTGATAAGGCCTAATGGC
20634970 TAATGTAAAA
Statistics
Matches: 210, Mismatches: 2, Indels: 10
0.95 0.01 0.05
Matches are distributed among these distances:
234 12 0.06
235 153 0.73
236 1 0.00
241 1 0.00
243 43 0.20
ACGTcount: A:0.28, C:0.08, G:0.34, T:0.31
Consensus pattern (238 bp):
GATGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATGA
GGCCTAATGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGT
GGTGAATGTGAAAGTGTATGTATATGTGATGAGGCCTAAGAGTGGTGAATGTGAAAGTGTATGTA
TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
Found at i:20634968 original size:97 final size:98
Alignment explanation
Indices: 20634515--20634969 Score: 790
Period size: 97 Copynumber: 4.8 Consensus size: 98
20634505 GGCCGATGTG
20634515 ATGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATGAG
1 ATGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATGAG
20634580 GCCTAAT-GCCGATGTGGTGAATGTGAAAGTGT
66 GCCTAATGGCCGATGTGGTGAATGTGAAAGTGT
*
20634612 ATGTATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATGAG
1 ATGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATGAG
20634677 GCCT-A------A--TGGTGAATGTGAAAGTGT
66 GCCTAATGGCCGATGTGGTGAATGTGAAAGTGT
* *
20634701 ATGTATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGGATGTATATGTGATGAG
1 ATGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATGAG
20634766 GCCTAATGGCCGATGTGGTGAATGTGAAAGTGT
66 GCCTAATGGCCGATGTGGTGAATGTGAAAGTGT
20634799 ATGTATATGT-ATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATGAG
1 ATGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATGAG
20634863 GCCTAATGGCCGATGTGGTGAATGTGAAAGTGT
66 GCCTAATGGCCGATGTGGTGAATGTGAAAGTGT
*
20634896 ATGTATATGTGATGAGGCCTAATGG-CGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAG
1 ATGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATGAG
20634960 GCCTAATGGC
66 GCCTAATGGC
20634970 TAATGTAAAA
Statistics
Matches: 341, Mismatches: 7, Indels: 20
0.93 0.02 0.05
Matches are distributed among these distances:
89 84 0.25
90 1 0.00
91 1 0.00
96 2 0.01
97 211 0.62
98 42 0.12
ACGTcount: A:0.28, C:0.08, G:0.34, T:0.31
Consensus pattern (98 bp):
ATGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATGAG
GCCTAATGGCCGATGTGGTGAATGTGAAAGTGT
Found at i:20635024 original size:97 final size:96
Alignment explanation
Indices: 20634519--20635024 Score: 424
Period size: 97 Copynumber: 5.3 Consensus size: 96
20634509 GATGTGATGT
* * * * *
20634519 ATATGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATGAGGCCT
1 ATATGTGATAAAGCCGAATGG-CAATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCT
* ** * *
20634584 AAT-GCCGATGTGGTGAATGTGAAAGTGTATGT
65 AATGGCCAATGT-GAAAATATGAAAGTGTATGC
* * * *
20634616 ATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATGAGGCCT
1 ATATGTGATAAAGCCGAATGG-CAATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCT
* *
20634681 AAT-G-----GTG--AATGTGAAAGTGTATGT
65 AATGGCCAATGTGAAAATATGAAAGTGTATGC
* * * * * * *
20634705 ATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGGATGTATATGTGATGAGGCCT
1 ATATGTGATAAAGCCGAATGG-CAATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCT
* ** * *
20634770 AATGGCCGATGTGGTGAATGTGAAAGTGTATGT
65 AATGGCCAATGT-GAAAATATGAAAGTGTATGC
* * * * *
20634803 ATATGT-ATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATGAGGCCT
1 ATATGTGATAAAGCCGAATGG-CAATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCT
* ** * *
20634867 AATGGCCGATGTGGTGAATGTGAAAGTGTATGT
65 AATGGCCAATGT-GAAAATATGAAAGTGTATGC
* * * *
20634900 ATATGTGATGAGGCCTAATGGCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCTA
1 ATATGTGATAAAGCCGAATGGCAATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCTA
* **
20634965 ATGGCTAATGT-AAAATAT-ATGTGTGATATGC
66 ATGGCCAATGTGAAAATATGA-AAGTG-TATGC
*
20634996 ATATGTGGTAAAGCCGAATGGCTAATGTG
1 ATATGTGATAAAGCCGAATGGC-AATGTG
20635025 AATGTTGTAA
Statistics
Matches: 376, Mismatches: 20, Indels: 26
0.89 0.05 0.06
Matches are distributed among these distances:
89 82 0.22
90 1 0.00
91 1 0.00
92 2 0.01
94 1 0.00
95 9 0.02
96 23 0.06
97 220 0.59
98 37 0.10
ACGTcount: A:0.28, C:0.08, G:0.33, T:0.31
Consensus pattern (96 bp):
ATATGTGATAAAGCCGAATGGCAATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCTA
ATGGCCAATGTGAAAATATGAAAGTGTATGC
Found at i:20635121 original size:37 final size:37
Alignment explanation
Indices: 20635071--20635189 Score: 220
Period size: 37 Copynumber: 3.2 Consensus size: 37
20635061 GGAATATGTT
*
20635071 CCGGGTGAGACCCGATGACTACGTGTGGAGATTATGA
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
20635108 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
*
20635145 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGT
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
20635182 CCGGGTAA
1 CCGGGTAA
20635190 ACTTCTTTTA
Statistics
Matches: 80, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 80 1.00
ACGTcount: A:0.25, C:0.19, G:0.34, T:0.22
Consensus pattern (37 bp):
CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
Found at i:20637081 original size:40 final size:40
Alignment explanation
Indices: 20636999--20637083 Score: 107
Period size: 40 Copynumber: 2.1 Consensus size: 40
20636989 GAGAATTGAG
** * * *
20636999 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGCCCCGAAGAGCAATCATACT
* *
20637039 AGTGATGTATCCGGGCTAGGCCCCGAAGAGCAATCATACT
1 AGTGATGTATCCGGACTAAGCCCCGAAGAGCAATCATACT
20637079 AGTGA
1 AGTGA
20637084 CGTGTATTCG
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 38 1.00
ACGTcount: A:0.27, C:0.21, G:0.28, T:0.24
Consensus pattern (40 bp):
AGTGATGTATCCGGACTAAGCCCCGAAGAGCAATCATACT
Found at i:20637272 original size:29 final size:29
Alignment explanation
Indices: 20637230--20637393 Score: 301
Period size: 29 Copynumber: 5.7 Consensus size: 29
20637220 GCGAATGATT
20637230 GAGGCACTATGTGTGCGAGATCAGTAATC
1 GAGGCACTATGTGTGCGAGATCAGTAATC
20637259 GAGGCACTATGTGTGCGAGATCAGTAATC
1 GAGGCACTATGTGTGCGAGATCAGTAATC
*
20637288 GAGGCACTATGTGTGCGAGATCAGTAATT
1 GAGGCACTATGTGTGCGAGATCAGTAATC
20637317 GAGGCACTATGTGTGCGAGATCAGTAATC
1 GAGGCACTATGTGTGCGAGATCAGTAATC
*
20637346 GAGGCACTATGTGTGCGAGATCAGTAATT
1 GAGGCACTATGTGTGCGAGATCAGTAATC
*
20637375 GAGGCACTGTGTGTGCGAG
1 GAGGCACTATGTGTGCGAG
20637394 TTTTTCAACA
Statistics
Matches: 131, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 131 1.00
ACGTcount: A:0.26, C:0.16, G:0.33, T:0.25
Consensus pattern (29 bp):
GAGGCACTATGTGTGCGAGATCAGTAATC
Found at i:20637975 original size:40 final size:41
Alignment explanation
Indices: 20637877--20637975 Score: 114
Period size: 41 Copynumber: 2.4 Consensus size: 41
20637867 TTCGAATGGT
* ** * *
20637877 ATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTTACTAA
1 ATCCGGGCTATGTCCCGAAGGCAATTGTGCGAAGTAACTAA
20637918 ATCCGGGCTAAT-TCCCGAAGGCAATTGTGCGAA-TAACTATA
1 ATCCGGGCT-ATGTCCCGAAGGCAATTGTGCGAAGTAACTA-A
20637959 A-CCGGGCTATGTCCCGA
1 ATCCGGGCTATGTCCCGA
20637976 GGACAATCGA
Statistics
Matches: 50, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
39 2 0.04
40 18 0.36
41 29 0.58
42 1 0.02
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.25
Consensus pattern (41 bp):
ATCCGGGCTATGTCCCGAAGGCAATTGTGCGAAGTAACTAA
Found at i:20640755 original size:49 final size:49
Alignment explanation
Indices: 20640699--20641353 Score: 1168
Period size: 49 Copynumber: 13.4 Consensus size: 49
20640689 TACATATATG
* * * *
20640699 TGTGATAAGGCCGAATGGCCAATGCGATGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
* *
20640748 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGGATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
*
20640797 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
*
20640846 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
20640895 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
*
20640944 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
*
20640993 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
*
20641042 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-ATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
*
20641090 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
*
20641139 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
*
20641188 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
*
20641237 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
20641286 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
20641335 TGTGATAAGGCCTAATGGC
1 TGTGATAAGGCCTAATGGC
20641354 TAATGTAAAA
Statistics
Matches: 589, Mismatches: 16, Indels: 2
0.97 0.03 0.00
Matches are distributed among these distances:
48 46 0.08
49 543 0.92
ACGTcount: A:0.28, C:0.09, G:0.33, T:0.30
Consensus pattern (49 bp):
TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
Found at i:20641505 original size:37 final size:37
Alignment explanation
Indices: 20641455--20641573 Score: 220
Period size: 37 Copynumber: 3.2 Consensus size: 37
20641445 GGAATATGTT
*
20641455 CCGGGTGAGACCCGATGACTACGTGTGGAGATTATGA
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
20641492 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
*
20641529 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGT
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
20641566 CCGGGTAA
1 CCGGGTAA
20641574 CTTCTTTTAT
Statistics
Matches: 80, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 80 1.00
ACGTcount: A:0.25, C:0.19, G:0.34, T:0.22
Consensus pattern (37 bp):
CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
Found at i:20643649 original size:29 final size:29
Alignment explanation
Indices: 20643607--20643741 Score: 234
Period size: 29 Copynumber: 4.7 Consensus size: 29
20643597 GCGAATGATT
*
20643607 GAGGCACGATGTGTGCGAGATCAGTAATC
1 GAGGCACTATGTGTGCGAGATCAGTAATC
*
20643636 GAGGCACTATGTGTGCGAGATCAGTAATT
1 GAGGCACTATGTGTGCGAGATCAGTAATC
20643665 GAGGCACTATGTGTGCGAGATCAGTAATC
1 GAGGCACTATGTGTGCGAGATCAGTAATC
*
20643694 GAGGCACTATGTGTGCGAGATCAGTAATT
1 GAGGCACTATGTGTGCGAGATCAGTAATC
*
20643723 GAGGCACTGTGTGTGCGAG
1 GAGGCACTATGTGTGCGAG
20643742 TTTTTCAACA
Statistics
Matches: 101, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
29 101 1.00
ACGTcount: A:0.26, C:0.16, G:0.34, T:0.24
Consensus pattern (29 bp):
GAGGCACTATGTGTGCGAGATCAGTAATC
Found at i:20643678 original size:58 final size:58
Alignment explanation
Indices: 20643604--20643741 Score: 258
Period size: 58 Copynumber: 2.4 Consensus size: 58
20643594 TGTGCGAATG
*
20643604 ATTGAGGCACGATGTGTGCGAGATCAGTAATCGAGGCACTATGTGTGCGAGATCAGTA
1 ATTGAGGCACTATGTGTGCGAGATCAGTAATCGAGGCACTATGTGTGCGAGATCAGTA
20643662 ATTGAGGCACTATGTGTGCGAGATCAGTAATCGAGGCACTATGTGTGCGAGATCAGTA
1 ATTGAGGCACTATGTGTGCGAGATCAGTAATCGAGGCACTATGTGTGCGAGATCAGTA
*
20643720 ATTGAGGCACTGTGTGTGCGAG
1 ATTGAGGCACTATGTGTGCGAG
20643742 TTTTTCAACA
Statistics
Matches: 78, Mismatches: 2, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
58 78 1.00
ACGTcount: A:0.26, C:0.15, G:0.33, T:0.25
Consensus pattern (58 bp):
ATTGAGGCACTATGTGTGCGAGATCAGTAATCGAGGCACTATGTGTGCGAGATCAGTA
Found at i:20644294 original size:41 final size:41
Alignment explanation
Indices: 20644225--20644365 Score: 114
Period size: 40 Copynumber: 3.5 Consensus size: 41
20644215 TTCGAATGGT
* * ** * *
20644225 ATCCGAGCTAAGTCCCGAAGGCTTTTGTGCTAAGTTACTA-A
1 ATCCGGGCTAATTCCCGAAGGCAATTGTGCGAA-TAACTATA
20644266 ATCCGGGCTAATTCCCGAAGGCAATTGTGCGAATAACTATA
1 ATCCGGGCTAATTCCCGAAGGCAATTGTGCGAATAACTATA
* * *
20644307 A-CCGGGCT-ATGTCCCG-AGGACAATTGAGCGAGTCACTAT-
1 ATCCGGGCTAAT-TCCCGAAGG-CAATTGTGCGAATAACTATA
* *
20644346 ATCC-GGTTAAATCCCGAAGG
1 ATCCGGGCTAATTCCCGAAGG
20644366 TACGTGATTC
Statistics
Matches: 83, Mismatches: 11, Indels: 13
0.78 0.10 0.12
Matches are distributed among these distances:
39 14 0.17
40 39 0.47
41 30 0.36
ACGTcount: A:0.28, C:0.23, G:0.24, T:0.24
Consensus pattern (41 bp):
ATCCGGGCTAATTCCCGAAGGCAATTGTGCGAATAACTATA
Found at i:20647679 original size:341 final size:341
Alignment explanation
Indices: 20647051--20647842 Score: 1395
Period size: 341 Copynumber: 2.3 Consensus size: 341
20647041 TGTGTGATAA
* * * * *
20647051 AGCCGAATGGCCAATGCGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATG
1 AGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATGAGGCCTAATGGCCGATG
* *
20647116 TGATGAATGTGAAAGTGGATGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGT
66 TGGTGAATGTGAAAGTGTATGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGT
*
20647181 GTATGCATATGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATA
131 GTATGCATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATA
* * *
20647246 AGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGAT
196 AGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGGATGTACATATGATAAGGCCTAATGGCCGAT
20647311 GTGGTGAATGTGAAAGTGGATGTATATGTGATAGGCCTAATGGCCGATCTGGTGAATGTGAAAGT
261 GTGGTGAATGTGAAAGTGGATGTATATGTGATAGGCCTAATGGCCGATCTGGTGAATGTGAAAGT
20647376 GTATGTATATGTGATG
326 GTATGTATATGTGATG
20647392 AGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATGAGGCCTAATGGCCGATG
1 AGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATGAGGCCTAATGGCCGATG
20647457 TGGTGAATGTGAAAGTGTATGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGT
66 TGGTGAATGTGAAAGTGTATGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGT
* **
20647522 GTATGTATATGTGATAAGTTCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATA
131 GTATGCATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATA
*
20647587 AGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGGATGTACATATGATGAGGCCTAATGGCCGAT
196 AGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGGATGTACATATGATAAGGCCTAATGGCCGAT
* * *
20647652 GTGGTGAATGTGAAAGTGTATGTATATGTGATAGGCCTAATGGCCGATGTGGTGAATGTTAAAGT
261 GTGGTGAATGTGAAAGTGGATGTATATGTGATAGGCCTAATGGCCGATCTGGTGAATGTGAAAGT
20647717 GTATGTATATGTGATG
326 GTATGTATATGTGATG
20647733 AGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATGAGGCCTAATGGCCGAT
1 A-GCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATGAGGCCTAATGGCCGAT
* *
20647798 GTGGTGAATATGAAAGTGTATGTATATGTGATAAGGCCTAATGGC
65 GTGGTGAATGTGAAAGTGTATGTATATGTGATGAGGCCTAATGGC
20647843 TAATGTAAAA
Statistics
Matches: 430, Mismatches: 20, Indels: 1
0.95 0.04 0.00
Matches are distributed among these distances:
341 324 0.75
342 106 0.25
ACGTcount: A:0.28, C:0.09, G:0.33, T:0.30
Consensus pattern (341 bp):
AGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATGAGGCCTAATGGCCGATG
TGGTGAATGTGAAAGTGTATGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGT
GTATGCATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATA
AGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGGATGTACATATGATAAGGCCTAATGGCCGAT
GTGGTGAATGTGAAAGTGGATGTATATGTGATAGGCCTAATGGCCGATCTGGTGAATGTGAAAGT
GTATGTATATGTGATG
Found at i:20647858 original size:49 final size:49
Alignment explanation
Indices: 20647056--20647842 Score: 1364
Period size: 49 Copynumber: 16.1 Consensus size: 49
20647046 GATAAAGCCG
* * * *
20647056 AATGGCCAATGCGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCT
1 AATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATGAGGCCT
* *
20647105 AATGGCCGATGTGATGAATGTGAAAGTGGATGTATATGTGATGAGGCCT
1 AATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATGAGGCCT
*
20647154 AATGGCCGATGTGGTGAATGTGAAAGTGTATGCATATGTGATGAGGCCT
1 AATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATGAGGCCT
*
20647203 AATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCT
1 AATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATGAGGCCT
*
20647252 AATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCT
1 AATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATGAGGCCT
*
20647301 AATGGCCGATGTGGTGAATGTGAAAGTGGATGTATATGTGAT-AGGCCT
1 AATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATGAGGCCT
*
20647349 AATGGCCGATCTGGTGAATGTGAAAGTGTATGTATATGTGATGA-GCCT
1 AATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATGAGGCCT
20647397 AATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATGAGGCCT
1 AATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATGAGGCCT
20647446 AATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATGAGGCCT
1 AATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATGAGGCCT
* **
20647495 AATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAGTTCT
1 AATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATGAGGCCT
*
20647544 AATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCT
1 AATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATGAGGCCT
* * *
20647593 AATGGCCGATGTGGTGAATGTGAAAGTGGATGTACATATGATGAGGCCT
1 AATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATGAGGCCT
20647642 AATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGAT-AGGCCT
1 AATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATGAGGCCT
*
20647690 AATGGCCGATGTGGTGAATGTTAAAGTGTATGTATATGTGATGAGGCCT
1 AATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATGAGGCCT
20647739 AATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATGAGGCCT
1 AATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATGAGGCCT
* *
20647788 AATGGCCGATGTGGTGAATATGAAAGTGTATGTATATGTGATAAGGCCT
1 AATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATGAGGCCT
20647837 AATGGC
1 AATGGC
20647843 TAATGTAAAA
Statistics
Matches: 706, Mismatches: 29, Indels: 6
0.95 0.04 0.01
Matches are distributed among these distances:
48 140 0.20
49 566 0.80
ACGTcount: A:0.28, C:0.09, G:0.33, T:0.30
Consensus pattern (49 bp):
AATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATGAGGCCT
Found at i:20647994 original size:37 final size:37
Alignment explanation
Indices: 20647944--20648062 Score: 220
Period size: 37 Copynumber: 3.2 Consensus size: 37
20647934 GGAATATGTT
*
20647944 CCGGGTGAGACCCGATGACTACGTGTGGAGATTATGA
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
20647981 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
*
20648018 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGT
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
20648055 CCGGGTAA
1 CCGGGTAA
20648063 AACTTCTTTT
Statistics
Matches: 80, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 80 1.00
ACGTcount: A:0.25, C:0.19, G:0.34, T:0.22
Consensus pattern (37 bp):
CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
Found at i:20671492 original size:49 final size:48
Alignment explanation
Indices: 20671435--20671657 Score: 299
Period size: 47 Copynumber: 4.7 Consensus size: 48
20671425 GATTTTACGC
* * * *
20671435 GATGAATGTGAATGTGTATAAATATGAGATAAGGCCTAATGGCCGATGT
1 GATGAATGTGAAAGTGTAT-AATATGTGATAAGGCCGAATGGCCAATGT
* **
20671484 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCTGATGT
1 GATGAATGTGAAAGTGTATA-ATATGTGATAAGGCCGAATGGCCAATGT
*
20671533 GATGAATGTGAAGGTGTAT-ATATGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAAAGTGTATAATATGTGATAAGGCCGAATGGCCAATGT
* * *
20671580 GATGAATGTGAAAGTGTAT-ATATGTGATAGGGCCGAGTGGCCAACGT
1 GATGAATGTGAAAGTGTATAATATGTGATAAGGCCGAATGGCCAATGT
*
20671627 GATGGATGTGAAAGTGTATAA-ATGTGATAAG
1 GATGAATGTGAAAGTGTATAATATGTGATAAG
20671658 TCCCGAAGGG
Statistics
Matches: 159, Mismatches: 13, Indels: 6
0.89 0.07 0.03
Matches are distributed among these distances:
47 95 0.60
48 2 0.01
49 62 0.39
ACGTcount: A:0.33, C:0.07, G:0.31, T:0.29
Consensus pattern (48 bp):
GATGAATGTGAAAGTGTATAATATGTGATAAGGCCGAATGGCCAATGT
Found at i:20680505 original size:45 final size:45
Alignment explanation
Indices: 20680441--20680611 Score: 190
Period size: 45 Copynumber: 3.9 Consensus size: 45
20680431 CGTACAGTAA
* ** * *
20680441 TATTCGGGCCTTTAAGCCTAGCAGGCTATGATGCCGGTGAGATAC
1 TATTCAGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAATAC
* * * *
20680486 TATTCAGGCCTTTGAGCCTAGTAGGCTACAATGCTGGTGAAATAC
1 TATTCAGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAATAC
20680531 TATT-AGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAATGA-
1 TATTCA-GGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAAT-AC
* *
20680576 TA-TC-GGGCTTCGAGCCTAGCAGGCGA-AATGCCGGTG
1 TATTCAGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTG
20680612 GATGAATTCG
Statistics
Matches: 110, Mismatches: 13, Indels: 9
0.83 0.10 0.07
Matches are distributed among these distances:
42 10 0.09
43 20 0.18
44 2 0.02
45 77 0.70
46 1 0.01
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.25
Consensus pattern (45 bp):
TATTCAGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAATAC
Found at i:20686961 original size:56 final size:56
Alignment explanation
Indices: 20686894--20687006 Score: 226
Period size: 56 Copynumber: 2.0 Consensus size: 56
20686884 ACTATAATGT
20686894 TAAAATCCCTGTGATTGTAAGTTTATAAGTTTAAATTTTGAAATTTGAACTACGTG
1 TAAAATCCCTGTGATTGTAAGTTTATAAGTTTAAATTTTGAAATTTGAACTACGTG
20686950 TAAAATCCCTGTGATTGTAAGTTTATAAGTTTAAATTTTGAAATTTGAACTACGTG
1 TAAAATCCCTGTGATTGTAAGTTTATAAGTTTAAATTTTGAAATTTGAACTACGTG
20687006 T
1 T
20687007 GGCTCAATTG
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
56 57 1.00
ACGTcount: A:0.34, C:0.09, G:0.16, T:0.42
Consensus pattern (56 bp):
TAAAATCCCTGTGATTGTAAGTTTATAAGTTTAAATTTTGAAATTTGAACTACGTG
Found at i:20688399 original size:45 final size:44
Alignment explanation
Indices: 20688338--20688494 Score: 185
Period size: 45 Copynumber: 3.5 Consensus size: 44
20688328 TCGTACAGTA
* * *
20688338 ATATTCTGGCCTTTGAGCCTAGCAGGCTATGATGCCGGT-AAGAT
1 ATATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAA-AT
* *
20688382 ATTATTCGGGCCTTTGAGCCTAGCAGGCTACAATGCCGGTGAAAT
1 A-TATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAAT
** *
20688427 ACTATTCAAGCCTTCGAGCCTAGTAGGCTATAATGCCGGTGAAAT
1 A-TATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAAT
20688472 GATA-TCGGG-CTTCGAGCCTAGCA
1 -ATATTCGGGCCTTCGAGCCTAGCA
20688495 AGCGAATTGC
Statistics
Matches: 98, Mismatches: 12, Indels: 7
0.84 0.10 0.06
Matches are distributed among these distances:
43 13 0.13
44 4 0.04
45 78 0.80
46 3 0.03
ACGTcount: A:0.25, C:0.22, G:0.26, T:0.27
Consensus pattern (44 bp):
ATATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAAT
Found at i:20690618 original size:94 final size:94
Alignment explanation
Indices: 20690515--20690948 Score: 415
Period size: 94 Copynumber: 4.7 Consensus size: 94
20690505 TCAATCCAAT
* * * *
20690515 CCACCGCAACTTCAATGGTATAGGATTTGTAGCTTCAATCTTCTACACTACAACATCAGGGAGAT
1 CCACTGCAACTTCAAGGGTATAGGATTTGTAGCTTCAATCTTCTCCACTACAACTTCAGGGAGAT
* *
20690580 AAAATTCACTATAGTAGATTCAATTTGAC
66 AAGATTCGCTATAGTAGATTCAATTTGAC
* * * * *
20690609 CAACTGCAACTTCAGGGGTATAGGATTTGTAGCTTCAATCTGCTCCACTACAATTTCAGGTAGAT
1 CCACTGCAACTTCAAGGGTATAGGATTTGTAGCTTCAATCTTCTCCACTACAACTTCAGGGAGAT
* **
20690674 AAGATTCGCTATGGTAGATTCAATCCGAC
66 AAGATTCGCTATAGTAGATTCAATTTGAC
* * *
20690703 CCACTGCAACTTCAGGGGTATAGGATTTGTAGCTTC-ATCTTGCTCCACTGCAACTTCAGGGAAA
1 CCACTGCAACTTCAAGGGTATAGGATTTGTAGCTTCAATCTT-CTCCACTACAACTTCAGGGAGA
* * *
20690767 TAAGATTCGCCATTGTAG-TATC-ATTCTAAC
65 TAAGATTCGCTATAGTAGAT-TCAATT-TGAC
* * * * ** * *
20690797 CCACTGTAACTTCAAGGGTATAGGAATTGTAGCTGC-ATCTTACTCCATTGTAGCTTTAGGGAGA
1 CCACTGCAACTTCAAGGGTATAGGATTTGTAGCTTCAATCTT-CTCCACTACAACTTCAGGGAGA
* * **
20690861 TAAGATTCACTATGGTA-ACTTCAATCCGAC
65 TAAGATTCGCTATAGTAGA-TTCAATTTGAC
*
20690891 CCACTG---C--CAAGGGGTATAGGATTTGCAGCTTCAA--TTCGATCCACTACAACTTCAGGGA
1 CCACTGCAACTTCAA-GGGTATAGGATTTGTAGCTTCAATCTTC--TCCACTACAACTTCAGGGA
20690949 TGTATGATTT
Statistics
Matches: 281, Mismatches: 49, Indels: 24
0.79 0.14 0.07
Matches are distributed among these distances:
88 1 0.00
89 5 0.02
90 32 0.11
91 2 0.01
93 7 0.02
94 231 0.82
95 3 0.01
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.29
Consensus pattern (94 bp):
CCACTGCAACTTCAAGGGTATAGGATTTGTAGCTTCAATCTTCTCCACTACAACTTCAGGGAGAT
AAGATTCGCTATAGTAGATTCAATTTGAC
Found at i:20690668 original size:44 final size:44
Alignment explanation
Indices: 20690514--20690763 Score: 150
Period size: 44 Copynumber: 5.4 Consensus size: 44
20690504 TTCAATCCAA
* ** *
20690514 TCCACCGCAACTTCAATGGTATAGGATTTGTAGCTTCAATCTTC
1 TCCACTGCAACTTCAGGGGTATAGGATTTGTAGCTTCAATCTGC
* * * ** * *
20690558 TACACTACAACATCAGGGAG-ATAAAATTCACTATAGTAGATTCAATTTGAC
1 TCCACTGCAACTTCAGGG-GTATAGGA-T---T-T-GTAGCTTCAATCTG-C
*
20690609 -CAACTGCAACTTCAGGGGTATAGGATTTGTAGCTTCAATCTGC
1 TCCACTGCAACTTCAGGGGTATAGGATTTGTAGCTTCAATCTGC
* * * * * *
20690652 TCCACTACAATTTCAGGTAG-ATAAGATTCGCTATGGTAGATTCAATCCGAC
1 TCCACTGCAACTTCAGG-GGTATAGGA-T---T-T-GTAGCTTCAATCTG-C
20690703 -CCACTGCAACTTCAGGGGTATAGGATTTGTAGCTTC-ATCTTGC
1 TCCACTGCAACTTCAGGGGTATAGGATTTGTAGCTTCAATC-TGC
20690746 TCCACTGCAACTTCAGGG
1 TCCACTGCAACTTCAGGG
20690764 AAATAAGATT
Statistics
Matches: 153, Mismatches: 32, Indels: 42
0.67 0.14 0.19
Matches are distributed among these distances:
43 5 0.03
44 71 0.46
45 6 0.04
46 2 0.01
48 2 0.01
49 6 0.04
50 59 0.39
51 2 0.01
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.30
Consensus pattern (44 bp):
TCCACTGCAACTTCAGGGGTATAGGATTTGTAGCTTCAATCTGC
Found at i:20690821 original size:188 final size:189
Alignment explanation
Indices: 20690504--20690948 Score: 491
Period size: 188 Copynumber: 2.4 Consensus size: 189
20690494 TTATTTTAAT
* * * ** *
20690504 TTCAATCCAATCCACCGCAACTTCAATGGTATAGGATTTGTAGCTTCAATCTT-CTACACTACAA
1 TTCAATCCGACCCACTGCAACTTCAGGGGTATAGGATTTGTAGCTTCAATCTTGCTCCACTACAA
* * * * *
20690568 CATCAGGGAGATAAAATTCACTATAGTAGATTCAATTTGACCAACTGCAACTTCAGGGGTATAGG
66 CTTCAGGGAAATAAAATTCACCATAGTAGATTCAATTTAACCAACTGCAACTTCAAGGGTATAGG
* * * * *
20690633 ATTTGTAGCTTCAATC-TGCTCCACTACA-ATTTCAGGTAGATAAGATTCGCTATGGTAGA-
131 AATTGTAGCTGC-ATCTTACTCCACTACAGATTT-AGGGAGATAAGATTCACTATGGTA-AC
*
20690692 TTCAATCCGACCCACTGCAACTTCAGGGGTATAGGATTTGTAGCTTC-ATCTTGCTCCACTGCAA
1 TTCAATCCGACCCACTGCAACTTCAGGGGTATAGGATTTGTAGCTTCAATCTTGCTCCACTACAA
* * * * *
20690756 CTTCAGGGAAATAAGATTCGCCATTGTAG-TATC-ATTCTAACCCACTGTAACTTCAAGGGTATA
66 CTTCAGGGAAATAAAATTCACCATAGTAGAT-TCAATT-TAACCAACTGCAACTTCAAGGGTATA
* ** *
20690819 GGAATTGTAGCTGCATCTTACTCCATTGTAGCTTTAGGGAGATAAGATTCACTATGGTAAC
129 GGAATTGTAGCTGCATCTTACTCCACTACAGATTTAGGGAGATAAGATTCACTATGGTAAC
* * * *
20690880 TTCAATCCGACCCACTGC--C--AAGGGGTATAGGATTTGCAGCTTCAAT-TCGATCCACTACAA
1 TTCAATCCGACCCACTGCAACTTCAGGGGTATAGGATTTGTAGCTTCAATCTTGCTCCACTACAA
20690940 CTTCAGGGA
66 CTTCAGGGA
20690949 TGTATGATTT
Statistics
Matches: 219, Mismatches: 31, Indels: 18
0.82 0.12 0.07
Matches are distributed among these distances:
184 42 0.19
185 2 0.01
186 1 0.00
187 13 0.06
188 158 0.72
189 3 0.01
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.30
Consensus pattern (189 bp):
TTCAATCCGACCCACTGCAACTTCAGGGGTATAGGATTTGTAGCTTCAATCTTGCTCCACTACAA
CTTCAGGGAAATAAAATTCACCATAGTAGATTCAATTTAACCAACTGCAACTTCAAGGGTATAGG
AATTGTAGCTGCATCTTACTCCACTACAGATTTAGGGAGATAAGATTCACTATGGTAAC
Found at i:20691114 original size:228 final size:228
Alignment explanation
Indices: 20690692--20691224 Score: 579
Period size: 228 Copynumber: 2.3 Consensus size: 228
20690682 CTATGGTAGA
* * * * *
20690692 TTCAATCCGACCCACTGCAACTTCAGGGGTATAGGATTTGTAGCTTCATCTTGCTCCACTGCAAC
1 TTCAATCCGACCCACTACAACTTCAGGGATATAGGATTTCTAGATTCATCTTGCTCCACTACAAC
* * * *
20690757 TTCAGGGAAATAAGATTCGCCATTGTAGTATCATTCTAACCCACTGTAACTTCAAGGGTATAGGA
66 TTCAGAGAAATAAGATTCGCCATAGTAGTATCATTCTAACCCACTGTAACTTCAAGGATATAAGA
* * *
20690822 ATTGTAGCTGCATCTTACTCCATTGTAGCTTTAGGGAGATAAGATTCACTATGGTAACTTCAATC
131 ATTGTAGCTGCATCTTACTCCACTATAGCTTTAGGGAGATAAGATTCACCATGGTAACTTCAATC
20690887 CGACCCACTGCCAAGGGGTATAGGATTTGCAGC
196 CGACCCACTGCCAAGGGGTATAGGATTTGCAGC
* * * * *
20690920 TTCAATTCGATCCACTACAACTTCAGGGATGTATGATTTCTAGATTCATCTTGCTCCACTATAAC
1 TTCAATCCGACCCACTACAACTTCAGGGATATAGGATTTCTAGATTCATCTTGCTCCACTACAAC
* * * * * * *
20690985 TTCAGAGAGATAAGATTTGCCATAGTAGTTTCATTCTGACCCATTTTAACTT-TAGAGATATAAG
66 TTCAGAGAAATAAGATTCGCCATAGTAGTATCATTCTAACCCACTGTAACTTCAAG-GATATAAG
* * * *
20691049 AATTGTAGCTTCAATC-TGCTCCACTATAGCTTTAGGGAGATAAGATTCGCCATTGTAGA-TTCA
130 AATTGTAGCTGC-ATCTTACTCCACTATAGCTTTAGGGAGATAAGATTCACCATGGTA-ACTTCA
* * * * *
20691112 ATCTGACCCACTACAACTTCAGGGGTATAGGAATTGTAGC
193 ATCCGACCCACTGC--C--AAGGGGTATAGGATTTGCAGC
* * * * * * * * * *
20691152 TTTAATCTGATCCATTGCAACTTTAGGGATATAGGA-TTCGTAGCTTCATCCTGCTCTACTGCAA
1 TTCAATCCGACCCACTACAACTTCAGGGATATAGGATTTC-TAGATTCATCTTGCTCCACTACAA
20691216 CTTCAGAGA
65 CTTCAGAGA
20691225 TATAGGACTC
Statistics
Matches: 251, Mismatches: 46, Indels: 12
0.81 0.15 0.04
Matches are distributed among these distances:
227 2 0.01
228 167 0.67
229 4 0.02
230 1 0.00
231 3 0.01
232 74 0.29
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (228 bp):
TTCAATCCGACCCACTACAACTTCAGGGATATAGGATTTCTAGATTCATCTTGCTCCACTACAAC
TTCAGAGAAATAAGATTCGCCATAGTAGTATCATTCTAACCCACTGTAACTTCAAGGATATAAGA
ATTGTAGCTGCATCTTACTCCACTATAGCTTTAGGGAGATAAGATTCACCATGGTAACTTCAATC
CGACCCACTGCCAAGGGGTATAGGATTTGCAGC
Found at i:20691117 original size:94 final size:94
Alignment explanation
Indices: 20690931--20691165 Score: 256
Period size: 94 Copynumber: 2.5 Consensus size: 94
20690921 TCAATTCGAT
* * * * * *
20690931 CCACTACAACTTCAGGGATGTATGATTTCTAGATTC-ATCTTGCTCCACTATAACTTCAGAGAGA
1 CCACTACAACTTCAGAGATATAAGAATTGTAGCTTCAATC-TGCTCCACTATAACTTCAGAGAGA
* * *
20690995 TAAGATTTGCCATAGTAGTTTCATTCTGAC
65 TAAGATTCGCCATAGTAGATTCAATCTGAC
* ** * * * *
20691025 CCATTTTAACTTTAGAGATATAAGAATTGTAGCTTCAATCTGCTCCACTATAGCTTTAGGGAGAT
1 CCACTACAACTTCAGAGATATAAGAATTGTAGCTTCAATCTGCTCCACTATAACTTCAGAGAGAT
*
20691090 AAGATTCGCCATTGTAGATTCAATCTGAC
66 AAGATTCGCCATAGTAGATTCAATCTGAC
* * * * *
20691119 CCACTACAACTTCAGGGGTATAGGAATTGTAGCTTTAATCTGATCCA
1 CCACTACAACTTCAGAGATATAAGAATTGTAGCTTCAATCTGCTCCA
20691166 TTGCAACTTT
Statistics
Matches: 114, Mismatches: 26, Indels: 2
0.80 0.18 0.01
Matches are distributed among these distances:
94 111 0.97
95 3 0.03
ACGTcount: A:0.30, C:0.20, G:0.17, T:0.33
Consensus pattern (94 bp):
CCACTACAACTTCAGAGATATAAGAATTGTAGCTTCAATCTGCTCCACTATAACTTCAGAGAGAT
AAGATTCGCCATAGTAGATTCAATCTGAC
Found at i:20691173 original size:44 final size:43
Alignment explanation
Indices: 20691100--20691231 Score: 124
Period size: 44 Copynumber: 3.0 Consensus size: 43
20691090 AAGATTCGCC
* *
20691100 ATTGTAGATTCAATCTGACCCACTACAACTTCAGGGGTATAGG
1 ATTGTAGCTTCAATCTGACCCACTACAACTTCAGGGATATAGG
* * * * *
20691143 AATTGTAGCTTTAATCTGATCCATTGCAACTTTAGGGATATAGG
1 -ATTGTAGCTTCAATCTGACCCACTACAACTTCAGGGATATAGG
* * *
20691187 ATTCGTAGCTTC-ATCCTG-CTCTACTGCAACTTCAGAGATATAGG
1 ATT-GTAGCTTCAAT-CTGAC-CCACTACAACTTCAGGGATATAGG
20691231 A
1 A
20691232 CTCATACTTC
Statistics
Matches: 72, Mismatches: 13, Indels: 6
0.79 0.14 0.07
Matches are distributed among these distances:
43 5 0.07
44 67 0.93
ACGTcount: A:0.29, C:0.20, G:0.20, T:0.32
Consensus pattern (43 bp):
ATTGTAGCTTCAATCTGACCCACTACAACTTCAGGGATATAGG
Found at i:20691325 original size:44 final size:44
Alignment explanation
Indices: 20691271--20691373 Score: 111
Period size: 44 Copynumber: 2.3 Consensus size: 44
20691261 TCATTCCAAC
* * *
20691271 CCACTGCAACTTTAGAAG-TATAGAAATTGTTGCTTCAAT-TTGAT
1 CCACTACAACTTCA-AAGATATAGAAATTGTAGCTTC-ATCTTGAT
* * * *
20691315 CCACTACAACTTCAAGGATATAGGATTTGTAGCTTCATCTTGCT
1 CCACTACAACTTCAAAGATATAGAAATTGTAGCTTCATCTTGAT
20691359 CCACTACAACTTCAA
1 CCACTACAACTTCAA
20691374 GGAGATAAGA
Statistics
Matches: 50, Mismatches: 7, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
43 4 0.08
44 46 0.92
ACGTcount: A:0.31, C:0.22, G:0.14, T:0.33
Consensus pattern (44 bp):
CCACTACAACTTCAAAGATATAGAAATTGTAGCTTCATCTTGAT
Found at i:20691349 original size:152 final size:152
Alignment explanation
Indices: 20691093--20691372 Score: 380
Period size: 152 Copynumber: 1.8 Consensus size: 152
20691083 GGGAGATAAG
** ** * *
20691093 ATTCGCCATTGTAGATTCAATCTGACCCACTACAACTTCAGGGGTATAGGAATTGTAGCTTTAAT
1 ATTCGCCATTGTAGATTCAATCCAACCCACTACAACTTCAGAAGTATAGAAATTGTAGCTTCAAT
* * * * * *
20691158 CTGATCCATTGCAACTTTAGGGATATAGGATTCGTAGCTTCATCCTGCTCTACTGCAACTTCAGA
66 CTGATCCACTACAACTTCAAGGATATAGGATTCGTAGCTTCATCCTGCTCCACTACAACTTCAGA
20691223 GATATAGGACTCATACTTCATC
131 GATATAGGACTCATACTTCATC
* * * * *
20691245 ATTCGCCATTGTAGTTTCATTCCAACCCACTGCAACTTTAGAAGTATAGAAATTGTTGCTTCAAT
1 ATTCGCCATTGTAGATTCAATCCAACCCACTACAACTTCAGAAGTATAGAAATTGTAGCTTCAAT
* * *
20691310 TTGATCCACTACAACTTCAAGGATATAGGATTTGTAGCTTCATCTTGCTCCACTACAACTTCA
66 CTGATCCACTACAACTTCAAGGATATAGGATTCGTAGCTTCATCCTGCTCCACTACAACTTCA
20691373 AGGAGATAAG
Statistics
Matches: 108, Mismatches: 20, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
152 108 1.00
ACGTcount: A:0.28, C:0.23, G:0.16, T:0.33
Consensus pattern (152 bp):
ATTCGCCATTGTAGATTCAATCCAACCCACTACAACTTCAGAAGTATAGAAATTGTAGCTTCAAT
CTGATCCACTACAACTTCAAGGATATAGGATTCGTAGCTTCATCCTGCTCCACTACAACTTCAGA
GATATAGGACTCATACTTCATC
Found at i:20691374 original size:44 final size:44
Alignment explanation
Indices: 20691297--20691479 Score: 149
Period size: 44 Copynumber: 4.0 Consensus size: 44
20691287 AGTATAGAAA
* * *
20691297 TTGTTGCTTCAATTTGATCCACTACAACTTCAAGGATATAGGAT
1 TTGTAGCTTCAATTTGATCCACTACAACTTCAAGGAGATAAGAT
*
20691341 TTGTAGCTTC-ATCTTGCTCCACTACAACTTCAAGGAGATAAGAT
1 TTGTAGCTTCAAT-TTGATCCACTACAACTTCAAGGAGATAAGAT
* * * * * *
20691385 TCGCTATGGCTGATTCAATCTGA-CCAATTGCAACTTCAGAGG-TATATGAT
1 TTG-TA--GC---TTCAATTTGATCC-ACTACAACTTCA-AGGAGATAAGAT
*
20691435 TTGTAGCTTCAATCT-ACTCCACTACAACTTCAAGGAGATAAGAT
1 TTGTAGCTTCAATTTGA-TCCACTACAACTTCAAGGAGATAAGAT
20691479 T
1 T
20691480 CGCTATGGTG
Statistics
Matches: 110, Mismatches: 16, Indels: 26
0.72 0.11 0.17
Matches are distributed among these distances:
43 6 0.05
44 64 0.58
45 4 0.04
47 4 0.04
49 4 0.04
50 23 0.21
51 5 0.05
ACGTcount: A:0.30, C:0.21, G:0.16, T:0.33
Consensus pattern (44 bp):
TTGTAGCTTCAATTTGATCCACTACAACTTCAAGGAGATAAGAT
Found at i:20691437 original size:94 final size:94
Alignment explanation
Indices: 20691321--20691528 Score: 305
Period size: 94 Copynumber: 2.2 Consensus size: 94
20691311 TGATCCACTA
*
20691321 CAACTTCA-AGGATATAGGATTTGTAGCTTC-ATCTTGCTCCACTACAACTTCAAGGAGATAAGA
1 CAACTTCAGAGG-TATAGGATTTGTAGCTTCAATC-TACTCCACTACAACTTCAAGGAGATAAGA
* *
20691384 TTCGCTATGGCTGA-TTCAATCTGACCAATTG
64 TTCGCTATGG-TGACTTCAACCTGACCAACTG
*
20691415 CAACTTCAGAGGTATATGATTTGTAGCTTCAATCTACTCCACTACAACTTCAAGGAGATAAGATT
1 CAACTTCAGAGGTATAGGATTTGTAGCTTCAATCTACTCCACTACAACTTCAAGGAGATAAGATT
*
20691480 CGCTATGGTGACTTCAACCTGACCCACTG
66 CGCTATGGTGACTTCAACCTGACCAACTG
* *
20691509 CAATTTCAGGGGTATAGGAT
1 CAACTTCAGAGGTATAGGAT
20691529 CTGTGGTTTC
Statistics
Matches: 103, Mismatches: 8, Indels: 6
0.88 0.07 0.05
Matches are distributed among these distances:
93 3 0.03
94 94 0.91
95 6 0.06
ACGTcount: A:0.30, C:0.22, G:0.19, T:0.30
Consensus pattern (94 bp):
CAACTTCAGAGGTATAGGATTTGTAGCTTCAATCTACTCCACTACAACTTCAAGGAGATAAGATT
CGCTATGGTGACTTCAACCTGACCAACTG
Found at i:20693836 original size:40 final size:40
Alignment explanation
Indices: 20693775--20693919 Score: 130
Period size: 40 Copynumber: 3.6 Consensus size: 40
20693765 TGATATTTCA
* * * *
20693775 CACACTAAGTG-CAGTACATAGCCAAAACTATCTCAAATCG
1 CACACTAAGTGCCA-CATATAGCCGAAGCTATCTCAAATCG
** * * *
20693815 CACACTAAGTGCCTTATATAGCTGAAGCTATATAAAATCG
1 CACACTAAGTGCCACATATAGCCGAAGCTATCTCAAATCG
* * * * * *
20693855 CACATTAAATGCCACATGTAGTCGAAGCTATCTCATATAG
1 CACACTAAGTGCCACATATAGCCGAAGCTATCTCAAATCG
*
20693895 CACATTAAGTGCCACATATAGCCGA
1 CACACTAAGTGCCACATATAGCCGA
20693920 TGTGATATCG
Statistics
Matches: 83, Mismatches: 21, Indels: 2
0.78 0.20 0.02
Matches are distributed among these distances:
40 82 0.99
41 1 0.01
ACGTcount: A:0.37, C:0.24, G:0.14, T:0.24
Consensus pattern (40 bp):
CACACTAAGTGCCACATATAGCCGAAGCTATCTCAAATCG
Found at i:20697180 original size:93 final size:93
Alignment explanation
Indices: 20697068--20697238 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
20697058 GCCCATAAGT
* *
20697068 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
20697133 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
20697161 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
20697226 CGAGTTCGGATGC
66 CGAGTTCGGATGC
20697239 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:20697235 original size:46 final size:46
Alignment explanation
Indices: 20697060--20697235 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
20697050 TGTAACCCGC
* * *
20697060 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
20697106 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* *
20697156 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
20697199 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
20697236 TGCTCAACCA
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 64 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:20703540 original size:43 final size:43
Alignment explanation
Indices: 20703487--20703572 Score: 109
Period size: 43 Copynumber: 2.0 Consensus size: 43
20703477 GATTTATGTG
* * *
20703487 GCATCCGAGCTCATTGAGAGGTTCGAGTTCATTATGGATGCGA
1 GCATCCGAGCTCATTGAGAGGTCCAAGTTCATCATGGATGCGA
* * * *
20703530 GCATCTGAGCTCGTTGAGTGGTCCAAGTTCATCATGTATGCGA
1 GCATCCGAGCTCATTGAGAGGTCCAAGTTCATCATGGATGCGA
20703573 TTCATGTAAC
Statistics
Matches: 36, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
43 36 1.00
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (43 bp):
GCATCCGAGCTCATTGAGAGGTCCAAGTTCATCATGGATGCGA
Found at i:20717099 original size:79 final size:82
Alignment explanation
Indices: 20716959--20717143 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
20716949 TCGAATGATG
* * *
20716959 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
*
20717023 CGTGCGAGTTAATA-AA
66 CGTGCGAGTCAATATAA
* **
20717039 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCAT
*
20717101 TCGTGCGAGTCACTATAA
65 TCGTGCGAGTCAATATAA
**
20717119 -CCGGGCTTCGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
20717144 AGCGAGTCGT
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 56 0.62
80 34 0.37
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (82 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTCAATATAA
Found at i:20717151 original size:40 final size:40
Alignment explanation
Indices: 20716960--20717151 Score: 151
Period size: 40 Copynumber: 4.8 Consensus size: 40
20716950 CGAATGATGT
* * * * *
20716960 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTCACTAAAC
** * * * * *
20717000 CCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATAAAT
1 CCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTCACTAAAC
* * *
20717040 CCGGGCTAAG-CCCGAAGGCATTTGTGCAAGTTACTAAAC
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAAC
*
20717079 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCACTATAA-
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTA-AAC
* *
20717119 CCGGGCTT-CGTCCCGAAGGCATTTGAGCGAGTC
1 CCGGG-TTAAGTCCCGAAGGCATTTGTGCGAGTC
20717152 GTTATATCCG
Statistics
Matches: 126, Mismatches: 20, Indels: 12
0.80 0.13 0.08
Matches are distributed among these distances:
39 33 0.26
40 82 0.65
41 11 0.09
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.23
Consensus pattern (40 bp):
CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAAC
Found at i:20717174 original size:79 final size:79
Alignment explanation
Indices: 20716959--20717176 Score: 183
Period size: 79 Copynumber: 2.7 Consensus size: 79
20716949 TCGAATGATG
* * * * ** *
20716959 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGA-TCCGAAGGCAT
1 TCCGGGCTAAG-CCCGAAGGCATTTGAGC-AAGTCACTAAACCCGGGTTA-AATTCCGAAGGCAT
*
20717022 TCGTGCGAGTTAATAAA
63 TCGTGCGAGTCAATAAA
* * * *
20717039 TCCGGGCTAAGCCCGAAGGCATTTGTGCAAGTTACTAAACCCGGGTTAAGTCCCGAAGGCATTCG
1 TCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGGCATTCG
*
20717104 TGCGAGTCACTATAA
66 TGCGAGTCAATA-AA
** * ** * *
20717119 -CCGGGCTTCGTCCCGAAGGCATTTGAGCGAGTCGTTATATCC-GGTTAAATTCCGAAGG
1 TCCGGGCTAAG-CCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGG
20717177 TACGTGATTC
Statistics
Matches: 113, Mismatches: 21, Indels: 9
0.79 0.15 0.06
Matches are distributed among these distances:
79 69 0.61
80 44 0.39
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (79 bp):
TCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGGCATTCG
TGCGAGTCAATAAA
Found at i:20719641 original size:43 final size:42
Alignment explanation
Indices: 20719490--20719642 Score: 96
Period size: 43 Copynumber: 3.6 Consensus size: 42
20719480 AGTGATGCCA
** *
20719490 ATGCCATATCCCAAATATGGTC-TAG-CATGGGATCTCATTTCA
1 ATGCCATATCCCAAATATGGTCTTAGAC-T-AAATCTCATTTCG
* ** * * *
20719532 ATGCCAATAGCCCAGCTATGGTCTTACACTAATTCTCATAT-G
1 ATGCC-ATATCCCAAATATGGTCTTAGACTAAATCTCATTTCG
** * * * **
20719574 ATGTTGATGTCTCAAACACAGTCTTAGACGTAAATCTCATTTCG
1 ATG-CCATATCCCAAATATGGTCTTAGAC-TAAATCTCATTTCG
20719618 ATGCCATATCCCAAATATGGTCTTA
1 ATGCCATATCCCAAATATGGTCTTA
20719643 CACGAATACA
Statistics
Matches: 76, Mismatches: 29, Indels: 11
0.66 0.25 0.09
Matches are distributed among these distances:
42 22 0.29
43 46 0.61
44 7 0.09
45 1 0.01
ACGTcount: A:0.29, C:0.24, G:0.15, T:0.32
Consensus pattern (42 bp):
ATGCCATATCCCAAATATGGTCTTAGACTAAATCTCATTTCG
Found at i:20726794 original size:40 final size:40
Alignment explanation
Indices: 20726691--20726918 Score: 300
Period size: 40 Copynumber: 5.8 Consensus size: 40
20726681 CAGATGATAA
* * * *
20726691 CCGGGCTAAGTCTCGAAGGCATTTCTGCGAGTTACTAATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAT
20726731 CC-GGCTAAG-CCCGAAGGCATTTGTGCGAGTTACCAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAT
* *
20726769 CCGGGCTATGTCCCGAAGGCATTTGTGCAAGTTACCAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAT
*
20726809 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTCACCAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAT
* * *
20726849 CCGGGCTAAGTCCCGAAGGCATTGGTGTGAGTTACTATAA-
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCA-AAT
* * * *
20726889 CCTGGCTATGTCCCAAAGGCATTTGAGCGA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGA
20726919 AATTTCGAAG
Statistics
Matches: 166, Mismatches: 19, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
38 27 0.16
39 13 0.08
40 124 0.75
41 2 0.01
ACGTcount: A:0.25, C:0.25, G:0.27, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAT
Found at i:20734980 original size:40 final size:40
Alignment explanation
Indices: 20734746--20734973 Score: 336
Period size: 40 Copynumber: 5.8 Consensus size: 40
20734736 GATGATAACT
* *
20734746 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAATCC
* *
20734786 -AGCTAAG-CCCGAAGGCATTTGTGCGAGTTACCAAATCT
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAATCC
20734824 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAATCC
*
20734864 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTCACCAAATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAATCC
* *
20734904 GGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAA-CC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCA-AATCC
* * *
20734944 GGGCTATGTCCCAAAGGCATTTGAGCGAGT
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGT
20734974 AGCTATATCT
Statistics
Matches: 171, Mismatches: 14, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
38 28 0.16
39 12 0.07
40 129 0.75
41 2 0.01
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.23
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAATCC
Found at i:20739608 original size:40 final size:40
Alignment explanation
Indices: 20739563--20739729 Score: 194
Period size: 40 Copynumber: 4.2 Consensus size: 40
20739553 CGGAATATAA
20739563 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
20739603 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
20739643 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
20739683 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
20739722 CCGGATAT
1 CCGGATAT
20739730 CATTCAATTT
Statistics
Matches: 109, Mismatches: 17, Indels: 3
0.84 0.13 0.02
Matches are distributed among these distances:
39 14 0.13
40 95 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:20740575 original size:17 final size:19
Alignment explanation
Indices: 20740552--20740597 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
20740542 AAGAAGCATG
20740552 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
20740570 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
20740588 AATCATGCTC
1 AATCATGCTC
20740598 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:20747676 original size:40 final size:40
Alignment explanation
Indices: 20747550--20747715 Score: 194
Period size: 40 Copynumber: 4.2 Consensus size: 40
20747540 CGGAATATAA
* *
20747550 CCGGATATAATCAGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAATTGCCTTCGGGTCTTAGC
* * *
20747589 CCGGATAGAATAACTCGCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCAC-AATTGCCTTCGGGTCTTAGC
* *
20747629 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAATTGCCTTCGGGTCTTAGC
** * * *
20747669 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAATTGCCTTCGGGTCTTAGC
20747708 CCGGATAT
1 CCGGATAT
20747716 CATTCAATTT
Statistics
Matches: 109, Mismatches: 15, Indels: 6
0.84 0.12 0.05
Matches are distributed among these distances:
39 27 0.25
40 80 0.73
41 2 0.02
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAATTGCCTTCGGGTCTTAGC
Found at i:20748564 original size:17 final size:19
Alignment explanation
Indices: 20748541--20748586 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
20748531 AAGAAGCATG
20748541 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
20748559 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
20748577 AATCATGCTC
1 AATCATGCTC
20748587 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:20751455 original size:27 final size:27
Alignment explanation
Indices: 20751425--20751834 Score: 511
Period size: 27 Copynumber: 15.2 Consensus size: 27
20751415 AACACCCTAG
** *
20751425 GGGTAAAATGGTAATTTTATAAATCGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
* * *
20751452 GGGTAAAACGGTAATTCTGTAAATCAA
1 GGGTAAAACAGTAATTTTGTAAATCGA
*
20751479 GGGTAAAACAGTAATTCTT-TAAATTGA
1 GGGTAAAACAGTAATT-TTGTAAATCGA
* * *
20751506 GGGTAAAACGGTAATTCTATAAATCGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
* * *
20751533 GGATAAAATAGTAATTTTGTAAATCAA
1 GGGTAAAACAGTAATTTTGTAAATCGA
*
20751560 GGGTAAAAC-GATAATTTTGTAAATTGA
1 GGGTAAAACAG-TAATTTTGTAAATCGA
*
20751587 GGGTAAAACAGTAATTTTGTAAATTGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
*
20751614 GGGTAAAACGGTAATTTTGTAAATCGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
* *
20751641 GGGTAAAATAGTAATTCTGTAAATCGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
*
20751668 GGGTAAAAC-GATCATTTTGTAAATCGA
1 GGGTAAAACAG-TAATTTTGTAAATCGA
*
20751695 GGGTAAAACAGTAATTCTGTAAATCGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
* *
20751722 GGGTAAAATAGTAATTTTGTAAATTGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
* * *
20751749 GGGTAAAATAGTAATTCTATAAATCGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
** *
20751776 GGGTAAAATGGTAATTTTGTAAATCAA
1 GGGTAAAACAGTAATTTTGTAAATCGA
*
20751803 GGGTAAAACAGTAATTCTGTAAATCGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
20751830 GGGTA
1 GGGTA
20751835 CTTTGGTAAT
Statistics
Matches: 332, Mismatches: 45, Indels: 12
0.85 0.12 0.03
Matches are distributed among these distances:
26 3 0.01
27 326 0.98
28 3 0.01
ACGTcount: A:0.41, C:0.07, G:0.22, T:0.30
Consensus pattern (27 bp):
GGGTAAAACAGTAATTTTGTAAATCGA
Found at i:20751859 original size:27 final size:25
Alignment explanation
Indices: 20751829--20752007 Score: 126
Period size: 27 Copynumber: 6.6 Consensus size: 25
20751819 CTGTAAATCG
**
20751829 AGGGTACTTTGGTAATTTTACAAGTTT
1 AGGGTA-TTTGGTAATTTTACAA-ACT
* * * *
20751856 AGGGTGTTTCAGTAATTTTACAAGTCG
1 AGGGTATTT-GGTAATTTTACAA-ACT
* *
20751883 AGGGTATTTCAGTAATTTCACAAA-T
1 AGGGTATTT-GGTAATTTTACAAACT
20751908 CAGAGGTATCTTGGTAATTTTACAAACT
1 -AG-GGTAT-TTGGTAATTTTACAAACT
*
20751936 AGGGGTATTTTGGTAATTTTACAAACC
1 A-GGGTA-TTTGGTAATTTTACAAACT
* *
20751963 AGGGGTATTTTGGTAATTTTATAAACCA
1 A-GGGTA-TTTGGTAATTTTACAAA-CT
20751991 AGGGTATTTTGGTAATT
1 AGGGTA-TTTGGTAATT
20752008 CTACCTTACA
Statistics
Matches: 131, Mismatches: 13, Indels: 16
0.82 0.08 0.10
Matches are distributed among these distances:
26 5 0.04
27 119 0.91
28 7 0.05
ACGTcount: A:0.30, C:0.09, G:0.22, T:0.39
Consensus pattern (25 bp):
AGGGTATTTGGTAATTTTACAAACT
Found at i:20751860 original size:54 final size:54
Alignment explanation
Indices: 20751425--20751834 Score: 568
Period size: 54 Copynumber: 7.6 Consensus size: 54
20751415 AACACCCTAG
** * * * *
20751425 GGGTAAAATGGTAATTTTATAAATCGAGGGTAAAACGGTAATTCTGTAAATCAA
1 GGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTGTAAATCGA
* * * *
20751479 GGGTAAAACAGTAATTCTTTAAATTGAGGGTAAAACGGTAATTCTATAAATCGA
1 GGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTGTAAATCGA
* * * * * *
20751533 GGATAAAATAGTAATTTTGTAAATCAAGGGTAAAACGATAATTTTGTAAATTGA
1 GGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTGTAAATCGA
* *
20751587 GGGTAAAACAGTAATTTTGTAAATTGAGGGTAAAACGGTAATTTTGTAAATCGA
1 GGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTGTAAATCGA
* * *
20751641 GGGTAAAATAGTAATTCTGTAAATCGAGGGTAAAACGATCATTTTGTAAATCGA
1 GGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTGTAAATCGA
** *
20751695 GGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAATAGTAATTTTGTAAATTGA
1 GGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTGTAAATCGA
* * * *
20751749 GGGTAAAATAGTAATTCTATAAATCGAGGGTAAAATGGTAATTTTGTAAATCAA
1 GGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTGTAAATCGA
20751803 GGGTAAAACAGTAATTCTGTAAATCGAGGGTA
1 GGGTAAAACAGTAATTCTGTAAATCGAGGGTA
20751835 CTTTGGTAAT
Statistics
Matches: 315, Mismatches: 41, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
54 315 1.00
ACGTcount: A:0.41, C:0.07, G:0.22, T:0.30
Consensus pattern (54 bp):
GGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTGTAAATCGA
Found at i:20752000 original size:54 final size:54
Alignment explanation
Indices: 20751867--20752007 Score: 174
Period size: 54 Copynumber: 2.6 Consensus size: 54
20751857 GGGTGTTTCA
** * ** *
20751867 GTAATTTTACAAGTCGAGGGTATTTCAGTAATTTCACAAATCAGAGGTATCTTG
1 GTAATTTTACAAACCAAGGGTATTTTGGTAATTTCACAAACCAGAGGTATCTTG
* * * * *
20751921 GTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTG
1 GTAATTTTACAAACCAAGGGTATTTTGGTAATTTCACAAACCAGAGGTATCTTG
*
20751975 GTAATTTTATAAACCAAGGGTATTTTGGTAATT
1 GTAATTTTACAAACCAAGGGTATTTTGGTAATT
20752008 CTACCTTACA
Statistics
Matches: 73, Mismatches: 14, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
54 73 1.00
ACGTcount: A:0.31, C:0.10, G:0.21, T:0.38
Consensus pattern (54 bp):
GTAATTTTACAAACCAAGGGTATTTTGGTAATTTCACAAACCAGAGGTATCTTG
Found at i:20752033 original size:54 final size:54
Alignment explanation
Indices: 20751862--20752034 Score: 136
Period size: 54 Copynumber: 3.2 Consensus size: 54
20751852 GTTTAGGGTG
** * ** * * *
20751862 TTTCAGTAATTTTACAAGTCGAGGGTATTTCAGTAATT-TCACAAATCAGAGGTA
1 TTTCAGTAATTTTACAAACCAAGGGTATTTTGGTAATTCT-ACAAACCAGGGGCA
* * * * *
20751916 TCTT-GGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACCAGGGGTA
1 T-TTCAGTAATTTTACAAACCAAGGGTATTTTGGTAATTCTACAAACCAGGGGCA
** * **
20751970 TTTTGGTAATTTTATAAACCAAGGGTATTTTGGTAATTCTACCTTA-CAGGGGCA
1 TTTCAGTAATTTTACAAACCAAGGGTATTTTGGTAATTCTA-CAAACCAGGGGCA
20752024 TTTCAGTAATT
1 TTTCAGTAATT
20752035 CTACCCTGCA
Statistics
Matches: 96, Mismatches: 19, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
53 2 0.02
54 89 0.93
55 5 0.05
ACGTcount: A:0.30, C:0.12, G:0.20, T:0.38
Consensus pattern (54 bp):
TTTCAGTAATTTTACAAACCAAGGGTATTTTGGTAATTCTACAAACCAGGGGCA
Found at i:20752053 original size:27 final size:27
Alignment explanation
Indices: 20751989--20752060 Score: 90
Period size: 27 Copynumber: 2.7 Consensus size: 27
20751979 TTTTATAAAC
** *
20751989 CAAGGGTATTTTGGTAATTCTACCTTA
1 CAAGGGTATTTCAGTAATTCTACCCTA
* * *
20752016 CAGGGGCATTTCAGTAATTCTACCCTG
1 CAAGGGTATTTCAGTAATTCTACCCTA
20752043 CAAGGGTATTTCAGTAAT
1 CAAGGGTATTTCAGTAAT
20752061 GTTAGCCTAC
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 37 1.00
ACGTcount: A:0.26, C:0.18, G:0.21, T:0.35
Consensus pattern (27 bp):
CAAGGGTATTTCAGTAATTCTACCCTA
Found at i:20753928 original size:53 final size:53
Alignment explanation
Indices: 20753748--20753954 Score: 180
Period size: 53 Copynumber: 3.8 Consensus size: 53
20753738 ATTAGGGTTT
* * * * * *
20753748 AAGGATACCAAGTAAGACCATGCCAAGGCATGGCATTGGTAATTTTTACAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAA-GTTCATAAGGC
* * * * * * * *
20753802 AAGGAAATCATGTAAGACCATGTCAAGACATTGCATTGATAAACTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGT-AAGTTC-ATAAGGC
* * * * *
20753857 AAAGATCCCATGTAAGACCATGCCAAGGCATGGCAATGGTGAGTTCATAAGGT
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCATAAGGC
* * * *
20753910 AAGGATATCACGTAAGACCATGTCAATACATGGCAATGGTAAGTT
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTT
20753955 TAAAAAGGAA
Statistics
Matches: 119, Mismatches: 32, Indels: 5
0.76 0.21 0.03
Matches are distributed among these distances:
53 43 0.36
54 37 0.31
55 39 0.33
ACGTcount: A:0.37, C:0.17, G:0.23, T:0.23
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCATAAGGC
Found at i:20758985 original size:43 final size:43
Alignment explanation
Indices: 20758900--20758993 Score: 145
Period size: 43 Copynumber: 2.2 Consensus size: 43
20758890 TACCCCAAGG
*
20758900 GACACACGGCCGTGTAACATGACCGTGTGTCACACACGGCTGA
1 GACACACGGCCGTGTAACATGACCGTGTGTCACACACAGCTGA
* *
20758943 GACATACGGCCGTGTAACATGACCGTGTGTCAC-CTATAGCTGA
1 GACACACGGCCGTGTAACATGACCGTGTGTCACAC-ACAGCTGA
20758986 GACACACG
1 GACACACG
20758994 CCAGTGTCTC
Statistics
Matches: 46, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
42 1 0.02
43 45 0.98
ACGTcount: A:0.27, C:0.29, G:0.27, T:0.18
Consensus pattern (43 bp):
GACACACGGCCGTGTAACATGACCGTGTGTCACACACAGCTGA
Found at i:20759899 original size:22 final size:23
Alignment explanation
Indices: 20759874--20759959 Score: 77
Period size: 23 Copynumber: 3.8 Consensus size: 23
20759864 GTCATGGTCG
20759874 GTAAGCTCT-TTCGAGCT-AAACA
1 GTAAGCTCTATT-GAGCTGAAACA
**
20759896 GTAAGCTCTATTGAGCTGAAATG
1 GTAAGCTCTATTGAGCTGAAACA
* * **
20759919 GTAAGCTCAAATGAGCTGAAATG
1 GTAAGCTCTATTGAGCTGAAACA
* *
20759942 GTAAGCTCCAATGAGCTG
1 GTAAGCTCTATTGAGCTG
20759960 TGGTGAGTCC
Statistics
Matches: 57, Mismatches: 5, Indels: 3
0.88 0.08 0.05
Matches are distributed among these distances:
22 14 0.25
23 43 0.75
ACGTcount: A:0.33, C:0.17, G:0.24, T:0.26
Consensus pattern (23 bp):
GTAAGCTCTATTGAGCTGAAACA
Found at i:20759926 original size:23 final size:23
Alignment explanation
Indices: 20759896--20759959 Score: 101
Period size: 23 Copynumber: 2.8 Consensus size: 23
20759886 GAGCTAAACA
*
20759896 GTAAGCTCTATTGAGCTGAAATG
1 GTAAGCTCTAATGAGCTGAAATG
*
20759919 GTAAGCTCAAATGAGCTGAAATG
1 GTAAGCTCTAATGAGCTGAAATG
*
20759942 GTAAGCTCCAATGAGCTG
1 GTAAGCTCTAATGAGCTG
20759960 TGGTGAGTCC
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 38 1.00
ACGTcount: A:0.33, C:0.16, G:0.27, T:0.25
Consensus pattern (23 bp):
GTAAGCTCTAATGAGCTGAAATG
Found at i:20761565 original size:41 final size:41
Alignment explanation
Indices: 20761520--20761604 Score: 107
Period size: 41 Copynumber: 2.1 Consensus size: 41
20761510 GTACTAAGTC
20761520 AGGCTTTACGCCTAGCAAGCTTCGAGCCAATGTATTAAATT
1 AGGCTTTACGCCTAGCAAGCTTCGAGCCAATGTATTAAATT
** * * * * *
20761561 AGGCTTTGGGCCTAGTATGCTTCGTGCCAGTGTATTGAATT
1 AGGCTTTACGCCTAGCAAGCTTCGAGCCAATGTATTAAATT
20761602 AGG
1 AGG
20761605 TAATTGATAC
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
41 37 1.00
ACGTcount: A:0.24, C:0.19, G:0.26, T:0.32
Consensus pattern (41 bp):
AGGCTTTACGCCTAGCAAGCTTCGAGCCAATGTATTAAATT
Found at i:20763750 original size:41 final size:40
Alignment explanation
Indices: 20763532--20763752 Score: 248
Period size: 40 Copynumber: 5.5 Consensus size: 40
20763522 GCTCGATTGT
* * * *
20763532 CTTCGGGACATAGCCCGG-TTATAGTGATTCGCACAATTGC
1 CTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACAAATGC
* *
20763572 CTTTGGGAATTAGCCCGGATTTAGTAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGC
* * *
20763612 CTTCGGGACTTAACCCGGTTTTGGTAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGC
* * *
20763652 CTTCGGGACTTAACCCGGTTTTGGTAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGC
* * * *
20763692 CTTCGGGAATT-GACCCGGATTTAGTCACTTAGCACAAAAGC
1 CTTCGGGACTTAG-CCCGGATTTAGTAAC-TCGCACAAATGC
*
20763733 CTTCGAGACTTAGCCCGGAT
1 CTTCGGGACTTAGCCCGGAT
20763753 ACCATTCGAA
Statistics
Matches: 157, Mismatches: 20, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
40 128 0.82
41 28 0.18
42 1 0.01
ACGTcount: A:0.24, C:0.26, G:0.23, T:0.27
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGC
Found at i:20764393 original size:129 final size:129
Alignment explanation
Indices: 20764163--20764415 Score: 488
Period size: 129 Copynumber: 2.0 Consensus size: 129
20764153 CTCAAGATAT
*
20764163 TAACCAAGATAAAGGTATCATTATGCTTGCCTCTAACCGAATGCATGCACACCAATCCATCTCAT
1 TAACCAAGATAAAGGCATCATTATGCTTGCCTCTAACCGAATGCATGCACACCAATCCATCTCAT
20764228 GTGGCCGAATATGCATGTTGATGTTGAGGCCAATTACATATTTAATACCACACATAAATTGTCC
66 GTGGCCGAATATGCATGTTGATGTTGAGGCCAATTACATATTTAATACCACACATAAATTGTCC
20764292 TAACCAAGATAAAGGCATCATTATGCTTGCCTCTAACCGAATGCATGCACACCAATCCATCTCAT
1 TAACCAAGATAAAGGCATCATTATGCTTGCCTCTAACCGAATGCATGCACACCAATCCATCTCAT
*
20764357 GTGGCTGAATATGCATGTTGATGTTGAGGCCAATTACATATTTAATACCACACATAAAT
66 GTGGCCGAATATGCATGTTGATGTTGAGGCCAATTACATATTTAATACCACACATAAAT
20764416 GGCATACATT
Statistics
Matches: 122, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
129 122 1.00
ACGTcount: A:0.33, C:0.23, G:0.15, T:0.28
Consensus pattern (129 bp):
TAACCAAGATAAAGGCATCATTATGCTTGCCTCTAACCGAATGCATGCACACCAATCCATCTCAT
GTGGCCGAATATGCATGTTGATGTTGAGGCCAATTACATATTTAATACCACACATAAATTGTCC
Found at i:20767764 original size:31 final size:31
Alignment explanation
Indices: 20767729--20767976 Score: 246
Period size: 31 Copynumber: 8.0 Consensus size: 31
20767719 ATGGACTTTA
* * *
20767729 TCTATGTTTACGGTCTCAACGGGCTATCTCT
1 TCTATGTTTACTGTCCCAACGGACTATCTCT
* * *
20767760 TCTATGTTTACTATCCCAACAGACTATCTGT
1 TCTATGTTTACTGTCCCAACGGACTATCTCT
* **
20767791 TCTATCTTTACTGTCCCAGTGGACTATCTCT
1 TCTATGTTTACTGTCCCAACGGACTATCTCT
* * *
20767822 TCTATGTTTACTATCCCAGCGGATTATCTCT
1 TCTATGTTTACTGTCCCAACGGACTATCTCT
* * **
20767853 T-AAGTGTTTACCGTCCCAGTGGACTATCTCT
1 TCTA-TGTTTACTGTCCCAACGGACTATCTCT
* * * *
20767884 TCTGTGTTTACTATCCCAGCGGATTATCTCT
1 TCTATGTTTACTGTCCCAACGGACTATCTCT
* * * **
20767915 TATGTATTTACTGTCCCAATAGACTATCTCT
1 TCTATGTTTACTGTCCCAACGGACTATCTCT
*
20767946 TCTATGTTTACTGTCCCAACGGGCTATCTCT
1 TCTATGTTTACTGTCCCAACGGACTATCTCT
20767977 GGGGATGCTA
Statistics
Matches: 175, Mismatches: 40, Indels: 4
0.80 0.18 0.02
Matches are distributed among these distances:
30 1 0.01
31 174 0.99
ACGTcount: A:0.19, C:0.26, G:0.15, T:0.40
Consensus pattern (31 bp):
TCTATGTTTACTGTCCCAACGGACTATCTCT
Found at i:20767818 original size:62 final size:61
Alignment explanation
Indices: 20767752--20767976 Score: 279
Period size: 62 Copynumber: 3.6 Consensus size: 61
20767742 TCTCAACGGG
* * *
20767752 CTATCTCTTCTATGTTTACTATCCCAACAGACTATCTGTTCTATCTTTACTGTCCCAGTGGA
1 CTATCTCTTCTATGTTTACTATCCCAACGGACTATCTCTT-TATATTTACTGTCCCAGTGGA
* * * * *
20767814 CTATCTCTTCTATGTTTACTATCCCAGCGGATTATCTCTTAAGTGTTTACCGTCCCAGTGGA
1 CTATCTCTTCTATGTTTACTATCCCAACGGACTATCTCTTTA-TATTTACTGTCCCAGTGGA
* * * * * *
20767876 CTATCTCTTCTGTGTTTACTATCCCAGCGGATTATCTCTTATGTATTTACTGTCCCAATAGA
1 CTATCTCTTCTATGTTTACTATCCCAACGGACTATCTCTT-TATATTTACTGTCCCAGTGGA
* *
20767938 CTATCTCTTCTATGTTTACTGTCCCAACGGGCTATCTCT
1 CTATCTCTTCTATGTTTACTATCCCAACGGACTATCTCT
20767977 GGGGATGCTA
Statistics
Matches: 142, Mismatches: 19, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
61 1 0.01
62 141 0.99
ACGTcount: A:0.20, C:0.27, G:0.13, T:0.40
Consensus pattern (61 bp):
CTATCTCTTCTATGTTTACTATCCCAACGGACTATCTCTTTATATTTACTGTCCCAGTGGA
Found at i:20775580 original size:26 final size:26
Alignment explanation
Indices: 20775545--20775651 Score: 171
Period size: 26 Copynumber: 4.2 Consensus size: 26
20775535 TGAAATGCCC
*
20775545 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
*
20775571 ATCATAGAACATTTA-CTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
20775596 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
20775622 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
20775648 ATCA
1 ATCA
20775652 ATTTGTACCA
Statistics
Matches: 73, Mismatches: 7, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
25 22 0.30
26 51 0.70
ACGTcount: A:0.37, C:0.23, G:0.07, T:0.33
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:20775615 original size:51 final size:52
Alignment explanation
Indices: 20775545--20775651 Score: 180
Period size: 51 Copynumber: 2.1 Consensus size: 52
20775535 TGAAATGCCC
20775545 ATCATGGAACATTTACCTAAACCATTATCATAGAACATTTA-CTAACCCATT
1 ATCATGGAACATTTACCTAAACCATTATCATAGAACATTTACCTAACCCATT
* * *
20775596 ATCATGGAATATTTACCTAATCCATTATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAAACCATTATCATAGAACATTTACCTAACCCATT
20775648 ATCA
1 ATCA
20775652 ATTTGTACCA
Statistics
Matches: 52, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
51 38 0.73
52 14 0.27
ACGTcount: A:0.37, C:0.23, G:0.07, T:0.33
Consensus pattern (52 bp):
ATCATGGAACATTTACCTAAACCATTATCATAGAACATTTACCTAACCCATT
Found at i:20782657 original size:26 final size:26
Alignment explanation
Indices: 20782622--20782729 Score: 171
Period size: 26 Copynumber: 4.2 Consensus size: 26
20782612 TGAAATGCCC
*
20782622 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
*
20782648 ATCATAGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
20782674 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
20782700 ATCATGGAATATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
20782726 ATCA
1 ATCA
20782730 ATTTGTACCA
Statistics
Matches: 76, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 76 1.00
ACGTcount: A:0.37, C:0.23, G:0.06, T:0.33
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:20783326 original size:43 final size:43
Alignment explanation
Indices: 20783216--20783327 Score: 163
Period size: 43 Copynumber: 2.6 Consensus size: 43
20783206 TTCAATAAAC
20783216 TCGCACACTTAGTGCTAATTAATTAACAGAAGCTATAATTGTA
1 TCGCACACTTAGTGCTAATTAATTAACAGAAGCTATAATTGTA
* *
20783259 TCGCACACTTAGAGCTAATTAATTAGCCA-AAGCTATAATTGTA
1 TCGCACACTTAGTGCTAATTAATTA-ACAGAAGCTATAATTGTA
* * *
20783302 TCGCACACTTACTGCCAATAAATTAA
1 TCGCACACTTAGTGCTAATTAATTAA
20783328 ACCGAACTTA
Statistics
Matches: 61, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
43 59 0.97
44 2 0.03
ACGTcount: A:0.38, C:0.20, G:0.12, T:0.30
Consensus pattern (43 bp):
TCGCACACTTAGTGCTAATTAATTAACAGAAGCTATAATTGTA
Found at i:20789096 original size:71 final size:71
Alignment explanation
Indices: 20789008--20789171 Score: 301
Period size: 71 Copynumber: 2.3 Consensus size: 71
20788998 GAGATGTATC
*
20789008 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCATGATTCCAAGTGA
20789073 AGGACA
66 AGGACA
*
20789079 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTGGGTCGCATGCATGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCATGATTCCAAGTGA
*
20789144 CGGACA
66 AGGACA
20789150 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
20789172 AGACAAATCG
Statistics
Matches: 90, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
71 90 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCATGATTCCAAGTGA
AGGACA
Found at i:20797212 original size:40 final size:40
Alignment explanation
Indices: 20797167--20797333 Score: 151
Period size: 40 Copynumber: 4.2 Consensus size: 40
20797157 CGGAATATAA
20797167 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
** * *
20797207 CCGGATA-AATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* ** * * *
20797246 CCGGATGTAGCCACTAGCGCAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
20797286 CCGGATATAATTTCCAGCATAATTGTCTTCGGGAT-TTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGG-TCTTAGC
20797326 CCGGATAT
1 CCGGATAT
20797334 CATTCAATTT
Statistics
Matches: 101, Mismatches: 23, Indels: 6
0.78 0.18 0.05
Matches are distributed among these distances:
38 1 0.01
39 33 0.33
40 66 0.65
41 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.28
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:20799211 original size:40 final size:40
Alignment explanation
Indices: 20799152--20799359 Score: 202
Period size: 40 Copynumber: 5.2 Consensus size: 40
20799142 CAATTGAATG
* * * *
20799152 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
20799192 ATATCCGGGTTAAGACCCGAAGGCCA-TTGTGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGG-CATTTGTGCAAGTAATT
* * **
20799232 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
20799272 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
20799312 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
20799352 ATATCCGG
1 ATATCCGG
20799360 TTGTATTCCG
Statistics
Matches: 140, Mismatches: 26, Indels: 4
0.82 0.15 0.02
Matches are distributed among these distances:
39 2 0.01
40 136 0.97
41 2 0.01
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:20799290 original size:80 final size:80
Alignment explanation
Indices: 20799154--20799359 Score: 236
Period size: 80 Copynumber: 2.6 Consensus size: 80
20799144 ATTGAATGAT
* * ** * * *
20799154 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCCA-
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGG-CAT
*
20799218 TTGTGCTAGT-GACCAC
65 TTGTGCAAGTCGACC-C
* * *
20799234 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCATT
** *
20799299 TGTGCAAGTCGTTCT
66 TGTGCAAGTCGACCC
* *
20799314 ATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
20799360 TTGTATTCCG
Statistics
Matches: 107, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
79 2 0.02
80 103 0.96
81 2 0.02
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCATT
TGTGCAAGTCGACCC
Found at i:20800944 original size:138 final size:138
Alignment explanation
Indices: 20800696--20800971 Score: 552
Period size: 138 Copynumber: 2.0 Consensus size: 138
20800686 TCCGACACCG
20800696 GCGATGGTCTCGGGTTCGGGGTGTTACACTTGGCCATACTTGCAACTAGATTGAGGTATGTTTGA
1 GCGATGGTCTCGGGTTCGGGGTGTTACACTTGGCCATACTTGCAACTAGATTGAGGTATGTTTGA
20800761 TGTCATTCCTTAAGATTCATGCATGTTTTAGTTGTTAGTTTGAAACCTACCTAGCCCATGGCTTA
66 TGTCATTCCTTAAGATTCATGCATGTTTTAGTTGTTAGTTTGAAACCTACCTAGCCCATGGCTTA
20800826 GATTTCTT
131 GATTTCTT
20800834 GCGATGGTCTCGGGTTCGGGGTGTTACACTTGGCCATACTTGCAACTAGATTGAGGTATGTTTGA
1 GCGATGGTCTCGGGTTCGGGGTGTTACACTTGGCCATACTTGCAACTAGATTGAGGTATGTTTGA
20800899 TGTCATTCCTTAAGATTCATGCATGTTTTAGTTGTTAGTTTGAAACCTACCTAGCCCATGGCTTA
66 TGTCATTCCTTAAGATTCATGCATGTTTTAGTTGTTAGTTTGAAACCTACCTAGCCCATGGCTTA
20800964 GATTTCTT
131 GATTTCTT
20800972 TGCTATTTGA
Statistics
Matches: 138, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
138 138 1.00
ACGTcount: A:0.20, C:0.18, G:0.24, T:0.38
Consensus pattern (138 bp):
GCGATGGTCTCGGGTTCGGGGTGTTACACTTGGCCATACTTGCAACTAGATTGAGGTATGTTTGA
TGTCATTCCTTAAGATTCATGCATGTTTTAGTTGTTAGTTTGAAACCTACCTAGCCCATGGCTTA
GATTTCTT
Found at i:20801789 original size:29 final size:28
Alignment explanation
Indices: 20801757--20801859 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
20801747 GTGACGAGAT
* *
20801757 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTG-AATATA
* *
20801786 TGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTT-GAATATA
* * *
20801815 TGGCACTATGTGTGCGGGCTTGAATCACA
1 TGGCACTAAGTGTGCGAGCTTGAAT-ATA
20801844 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
20801860 TGATTGAGTA
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 3 0.05
29 58 0.94
30 1 0.02
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (28 bp):
TGGCACTAAGTGTGCGAGCTTGAATATA
Found at i:20809581 original size:29 final size:28
Alignment explanation
Indices: 20809549--20809651 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
20809539 GTGACGAGAT
* *
20809549 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTG-AATATA
* *
20809578 TGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTT-GAATATA
* * *
20809607 TGGCACTATGTGTGCGGGCTTGAATCACA
1 TGGCACTAAGTGTGCGAGCTTGAAT-ATA
20809636 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
20809652 TGATTGAGTA
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 3 0.05
29 58 0.94
30 1 0.02
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (28 bp):
TGGCACTAAGTGTGCGAGCTTGAATATA
Found at i:20816033 original size:42 final size:42
Alignment explanation
Indices: 20815905--20816044 Score: 131
Period size: 42 Copynumber: 3.2 Consensus size: 42
20815895 TGTTAACATT
* * * *
20815905 GATCTGAGATATCGTGTAAGACCGTGTCTGGGATATAGGCCTC
1 GATCTGA-ATTTCGTGTAAGACCATGTCTGGGATACAGGCATC
* * * *
20815948 GATTTGATATTTACGTGTAAGACCATGTCTAGAACATCA-GCATC
1 GATCTGA-ATTT-CGTGTAAGACCATGTCTGGGATA-CAGGCATC
*
20815992 GTATCTG-ATTTCGTGTAAGACCATGTCTGGGATAGAGGCATC
1 G-ATCTGAATTTCGTGTAAGACCATGTCTGGGATACAGGCATC
20816034 GATACTGAATT
1 GAT-CTGAATT
20816045 ACATGTAAAA
Statistics
Matches: 77, Mismatches: 14, Indels: 12
0.75 0.14 0.12
Matches are distributed among these distances:
41 3 0.04
42 29 0.38
43 16 0.21
44 24 0.31
45 5 0.06
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (42 bp):
GATCTGAATTTCGTGTAAGACCATGTCTGGGATACAGGCATC
Found at i:20822371 original size:41 final size:41
Alignment explanation
Indices: 20822320--20822400 Score: 137
Period size: 41 Copynumber: 2.0 Consensus size: 41
20822310 GATATTTACG
20822320 TGTAAGACCATGTCTGGGACATC-AGCATCGTATCTGATTTA
1 TGTAAGACCATGTCTGGGACATCGA-CATCGTATCTGATTTA
*
20822361 TGTAAGACCATGTTTGGGACATCGACATCGTATCTGATTT
1 TGTAAGACCATGTCTGGGACATCGACATCGTATCTGATTT
20822401 CGCGTATCTG
Statistics
Matches: 38, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
41 37 0.97
42 1 0.03
ACGTcount: A:0.26, C:0.19, G:0.22, T:0.33
Consensus pattern (41 bp):
TGTAAGACCATGTCTGGGACATCGACATCGTATCTGATTTA
Found at i:20822408 original size:14 final size:14
Alignment explanation
Indices: 20822389--20822416 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
20822379 ACATCGACAT
20822389 CGTATCTGATTTCG
1 CGTATCTGATTTCG
20822403 CGTATCTGATTTCG
1 CGTATCTGATTTCG
20822417 TGTAAGACTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.14, C:0.21, G:0.21, T:0.43
Consensus pattern (14 bp):
CGTATCTGATTTCG
Found at i:20822435 original size:56 final size:55
Alignment explanation
Indices: 20822348--20822457 Score: 168
Period size: 56 Copynumber: 2.0 Consensus size: 55
20822338 ACATCAGCAT
*
20822348 CGTATCTGATTTATGTAAGACCATGTTTGGGACATC-GACATCGTATCTGATTTCG
1 CGTATCTGATTTATGTAAGACCATGTATGGGACATCAG-CATCGTATCTGATTTCG
* *
20822403 CGTATCTGATTTCGTGTAAGACTATGTATGGGACATCAGCATCGTATCTGATTTC
1 CGTATCTGATTT-ATGTAAGACCATGTATGGGACATCAGCATCGTATCTGATTTC
20822458 ATGTAAGACC
Statistics
Matches: 50, Mismatches: 3, Indels: 3
0.89 0.05 0.05
Matches are distributed among these distances:
55 12 0.24
56 37 0.74
57 1 0.02
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.36
Consensus pattern (55 bp):
CGTATCTGATTTATGTAAGACCATGTATGGGACATCAGCATCGTATCTGATTTCG
Found at i:20822463 original size:42 final size:42
Alignment explanation
Indices: 20822403--20822655 Score: 312
Period size: 42 Copynumber: 6.0 Consensus size: 42
20822393 TCTGATTTCG
* * *
20822403 CGTATCTGATTTCGTGTAAGACTATGTATGGGACATCAGCAT
1 CGTATCTGATTTCATGTAAGACCATGTCTGGGACATCAGCAT
* * *
20822445 CGTATCTGATTTCATGTAAGACCATGTCTGAGACATCGGAAT
1 CGTATCTGATTTCATGTAAGACCATGTCTGGGACATCAGCAT
* *
20822487 CGTATCTAATTTCGTGTAAGACCATGTCTGGGACATCAGCAT
1 CGTATCTGATTTCATGTAAGACCATGTCTGGGACATCAGCAT
* * *
20822529 CGTATTTGATTTCGTGTAAGACCATGTCTGGGACATCGGCAT
1 CGTATCTGATTTCATGTAAGACCATGTCTGGGACATCAGCAT
* * *
20822571 CGTATTTGATTTCATGTAAGACCCTGTCTGGGACA-GAGGCAT
1 CGTATCTGATTTCATGTAAGACCATGTCTGGGACATCA-GCAT
* * *
20822613 CG-ATACTGAATTACATGTAAGACCACGTCTGGGACGTCAGCAT
1 CGTAT-CTG-ATTTCATGTAAGACCATGTCTGGGACATCAGCAT
20822656 TGTACCCGTT
Statistics
Matches: 183, Mismatches: 24, Indels: 7
0.86 0.11 0.03
Matches are distributed among these distances:
41 2 0.01
42 153 0.84
43 27 0.15
44 1 0.01
ACGTcount: A:0.26, C:0.20, G:0.24, T:0.30
Consensus pattern (42 bp):
CGTATCTGATTTCATGTAAGACCATGTCTGGGACATCAGCAT
Found at i:20822500 original size:98 final size:98
Alignment explanation
Indices: 20822313--20822500 Score: 299
Period size: 98 Copynumber: 1.9 Consensus size: 98
20822303 TCGATTAGAT
* * *
20822313 ATTTACGTGTAAGACCATGTCTGGGACATCAGCATCGTATCTGATTTATGTAAGACCATGTTTGG
1 ATTTACGTGTAAGACCATGTATGGGACATCAGCATCGTATCTGATTTATGTAAGACCATGTCTGA
*
20822378 GACATCGACATCGTATCTGATTTCGCGTATCTG
66 GACATCGACATCGTATCTAATTTCGCGTATCTG
*
20822411 ATTT-CGTGTAAGACTATGTATGGGACATCAGCATCGTATCTGATTTCATGTAAGACCATGTCTG
1 ATTTACGTGTAAGACCATGTATGGGACATCAGCATCGTATCTGATTT-ATGTAAGACCATGTCTG
20822475 AGACATCGGA-ATCGTATCTAATTTCG
65 AGACATC-GACATCGTATCTAATTTCG
20822501 TGTAAGACCA
Statistics
Matches: 83, Mismatches: 5, Indels: 4
0.90 0.05 0.04
Matches are distributed among these distances:
97 40 0.48
98 41 0.49
99 2 0.02
ACGTcount: A:0.26, C:0.19, G:0.22, T:0.34
Consensus pattern (98 bp):
ATTTACGTGTAAGACCATGTATGGGACATCAGCATCGTATCTGATTTATGTAAGACCATGTCTGA
GACATCGACATCGTATCTAATTTCGCGTATCTG
Found at i:20830374 original size:2 final size:2
Alignment explanation
Indices: 20830367--20830401 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
20830357 TTTCTCTTTT
20830367 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
20830402 TCTTTTTACT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:20831224 original size:31 final size:29
Alignment explanation
Indices: 20831189--20831247 Score: 84
Period size: 31 Copynumber: 2.0 Consensus size: 29
20831179 CTTAACAAGC
20831189 AAATG-CTTCTAAAATAATAATAAAAATTAAA
1 AAATGCCTT-TAAAATAAT-A-AAAAATTAAA
20831220 AAATGCCTTTAAAATAATAAAAAATTAA
1 AAATGCCTTTAAAATAATAAAAAATTAA
20831248 CAATAAAATA
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
29 9 0.33
30 1 0.04
31 14 0.52
32 3 0.11
ACGTcount: A:0.61, C:0.07, G:0.03, T:0.29
Consensus pattern (29 bp):
AAATGCCTTTAAAATAATAAAAAATTAAA
Found at i:20834393 original size:95 final size:95
Alignment explanation
Indices: 20834225--20834426 Score: 226
Period size: 95 Copynumber: 2.1 Consensus size: 95
20834215 CTCATACATA
* * * * * * *
20834225 TCATACGATGCCAATGCCATATCCCAGATATGGTCTTACATGGGATCTCAACTCGATGCTGATGT
1 TCATACAATGCCAATGCCATATCCCAAATATAGTCTTACACGAGATCTCAAATCGATGCTAATGT
* * *
20834290 TATATCCCAAATATGGTCTCATACGGGATC
66 CATATCCCAAACATGGTCTCATACAGGATC
* * *
20834320 TCATACAATGCCGATGCCATGTCCCAAATATAGTCTTATACGAGATCTCATAAT-GATGCTAATG
1 TCATACAATGCCAATGCCATATCCCAAATATAGTCTTACACGAGATCTCA-AATCGATGCTAATG
* * * *
20834384 TCATGTCCCATACATGGTCTTATATAGGATC
65 TCATATCCCAAACATGGTCTCATACAGGATC
20834415 TCATATCAATGC
1 TCATA-CAATGC
20834427 TTACGTCATG
Statistics
Matches: 88, Mismatches: 17, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
95 80 0.91
96 8 0.09
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.31
Consensus pattern (95 bp):
TCATACAATGCCAATGCCATATCCCAAATATAGTCTTACACGAGATCTCAAATCGATGCTAATGT
CATATCCCAAACATGGTCTCATACAGGATC
Found at i:20834404 original size:48 final size:48
Alignment explanation
Indices: 20834279--20834457 Score: 159
Period size: 48 Copynumber: 3.8 Consensus size: 48
20834269 ATCTCAACTC
* * * * *
20834279 GATGCTGATGTTATATCCCAAATATGGTCTCATACGGGATCTCATACA-
1 GATGCTGATGTCATGTCCCAAACATGGTCTTATACGAGATCTCATA-AT
* * * *
20834327 -ATGCCGATGCCATGTCCCAAATATAGTCTTATACGAGATCTCATAAT
1 GATGCTGATGTCATGTCCCAAACATGGTCTTATACGAGATCTCATAAT
* * *
20834374 GATGCTAATGTCATGTCCCATACATGGTCTTATA-TAGGATCTCAT-AT
1 GATGCTGATGTCATGTCCCAAACATGGTCTTATACGA-GATCTCATAAT
* * * *
20834421 CAATGCTTACGTCATGTCCCAGACATGGTCTTATACG
1 -GATGCTGATGTCATGTCCCAAACATGGTCTTATACG
20834458 GGGTCGCAAT
Statistics
Matches: 107, Mismatches: 19, Indels: 9
0.79 0.14 0.07
Matches are distributed among these distances:
46 1 0.01
47 41 0.38
48 65 0.61
ACGTcount: A:0.28, C:0.22, G:0.17, T:0.32
Consensus pattern (48 bp):
GATGCTGATGTCATGTCCCAAACATGGTCTTATACGAGATCTCATAAT
Found at i:20840172 original size:46 final size:45
Alignment explanation
Indices: 20840122--20840377 Score: 337
Period size: 46 Copynumber: 5.7 Consensus size: 45
20840112 TGCCACAGTG
* * * *
20840122 TCTTTCAACTATGGTCTTACTCATTTTCTGTCATGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACA-TTTCTATCAGGTTGCCATGGTA
***
20840168 TCTTTCAACCATGGTCTTGTTCATTTCATATCAGGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTC-TATCAGGTTGCCATGGTA
20840214 TCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTC-TATCAGGTTGCCATGGTA
* *
20840260 TCTTTCAACCATGGTCTTACACATTTTATATGAGGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACA-TTTCTATCAGGTTGCCATGGTA
20840306 TCTTTCAACCATGGTCTT--ACA---C--TCAGGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTCTATCAGGTTGCCATGGTA
20840344 TCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TCTTTCAACCATGGTCTTACACATTTC-TATCAG
20840378 AGAGCACACT
Statistics
Matches: 188, Mismatches: 12, Indels: 20
0.85 0.05 0.09
Matches are distributed among these distances:
38 33 0.18
40 3 0.02
43 1 0.01
44 3 0.02
45 4 0.02
46 141 0.75
47 3 0.02
ACGTcount: A:0.22, C:0.23, G:0.16, T:0.39
Consensus pattern (45 bp):
TCTTTCAACCATGGTCTTACACATTTCTATCAGGTTGCCATGGTA
Found at i:20840343 original size:38 final size:38
Alignment explanation
Indices: 20840292--20840365 Score: 148
Period size: 38 Copynumber: 1.9 Consensus size: 38
20840282 ATTTTATATG
20840292 AGGTTGCCATGGTATCTTTCAACCATGGTCTTACACTC
1 AGGTTGCCATGGTATCTTTCAACCATGGTCTTACACTC
20840330 AGGTTGCCATGGTATCTTTCAACCATGGTCTTACAC
1 AGGTTGCCATGGTATCTTTCAACCATGGTCTTACAC
20840366 ATTTCATATC
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 36 1.00
ACGTcount: A:0.22, C:0.26, G:0.19, T:0.34
Consensus pattern (38 bp):
AGGTTGCCATGGTATCTTTCAACCATGGTCTTACACTC
Found at i:20842524 original size:11 final size:11
Alignment explanation
Indices: 20842508--20842559 Score: 52
Period size: 11 Copynumber: 4.7 Consensus size: 11
20842498 TATACTAAAT
20842508 AAATAATAATA
1 AAATAATAATA
*
20842519 AAATAAT-ATT
1 AAATAATAATA
* *
20842529 AAATATCTCATA
1 AAATA-ATAATA
*
20842541 AAATATTAATA
1 AAATAATAATA
20842552 AAATAATA
1 AAATAATA
20842560 TTTATCTAAT
Statistics
Matches: 33, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
10 7 0.21
11 19 0.58
12 7 0.21
ACGTcount: A:0.63, C:0.04, G:0.00, T:0.33
Consensus pattern (11 bp):
AAATAATAATA
Found at i:20851651 original size:32 final size:32
Alignment explanation
Indices: 20851610--20851675 Score: 114
Period size: 32 Copynumber: 2.1 Consensus size: 32
20851600 GTTTTGTATT
* *
20851610 TTTAATTTAATTACTGAAATATGGTTGAAATA
1 TTTAATTTAATTACTAAAATATGGTTAAAATA
20851642 TTTAATTTAATTACTAAAATATGGTTAAAATA
1 TTTAATTTAATTACTAAAATATGGTTAAAATA
20851674 TT
1 TT
20851676 GGTTTTGTAT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.42, C:0.03, G:0.09, T:0.45
Consensus pattern (32 bp):
TTTAATTTAATTACTAAAATATGGTTAAAATA
Found at i:20851789 original size:2 final size:2
Alignment explanation
Indices: 20851782--20851818 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
20851772 AAATTATAAT
20851782 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
20851819 TTAAAAAAAA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:20859338 original size:20 final size:20
Alignment explanation
Indices: 20859309--20859348 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
20859299 TGGGAATATC
*
20859309 ACTCTTCTTAAAAGATACAA
1 ACTCTCCTTAAAAGATACAA
20859329 ACTCTCCTTAAAAGATACAA
1 ACTCTCCTTAAAAGATACAA
20859349 CTGAATGTCT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.45, C:0.23, G:0.05, T:0.28
Consensus pattern (20 bp):
ACTCTCCTTAAAAGATACAA
Found at i:20861867 original size:44 final size:44
Alignment explanation
Indices: 20861780--20861867 Score: 108
Period size: 44 Copynumber: 2.0 Consensus size: 44
20861770 ATCGATTGAA
**
20861780 GCTAAATTTTGCTAGGGAAGGGAAACAAGAAGAAAAATTAGAAG
1 GCTAAATTTTGCTAGGGAAGGGAAACAAGAAGAAAAAGAAGAAG
* *
20861824 GCTAAATTTTGCT-GGAGAAGGGAAACATGAA-AAAGAGGAAGAAG
1 GCTAAATTTTGCTAGG-GAAGGGAAACAAGAAGAAA-AAGAAGAAG
20861868 AATAAGAAGA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
43 5 0.13
44 33 0.87
ACGTcount: A:0.47, C:0.07, G:0.30, T:0.17
Consensus pattern (44 bp):
GCTAAATTTTGCTAGGGAAGGGAAACAAGAAGAAAAAGAAGAAG
Found at i:20861874 original size:6 final size:6
Alignment explanation
Indices: 20861856--20861930 Score: 60
Period size: 6 Copynumber: 12.5 Consensus size: 6
20861846 AAACATGAAA
* * * * * *
20861856 AAGAGG AAGAAG AATAAG AAGAAG AAGAAC AAGAAC AAGAAC AAAAAG
1 AAGAAG AAGAAG AAGAAG AAGAAG AAGAAG AAGAAG AAGAAG AAGAAG
* * * *
20861904 AAGAAC AAGAAC AAGAAC AAGAGG AAG
1 AAGAAG AAGAAG AAGAAG AAGAAG AAG
20861931 GGAAAAAAGG
Statistics
Matches: 59, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
6 59 1.00
ACGTcount: A:0.65, C:0.08, G:0.25, T:0.01
Consensus pattern (6 bp):
AAGAAG
Found at i:20861874 original size:9 final size:9
Alignment explanation
Indices: 20861856--20861930 Score: 60
Period size: 9 Copynumber: 8.3 Consensus size: 9
20861846 AAACATGAAA
*
20861856 AAGAGGAAG
1 AAGAAGAAG
*
20861865 AAGAATAAG
1 AAGAAGAAG
20861874 AAGAAGAAG
1 AAGAAGAAG
* *
20861883 AACAAGAAC
1 AAGAAGAAG
* *
20861892 AAGAACAAA
1 AAGAAGAAG
*
20861901 AAGAAGAAC
1 AAGAAGAAG
*
20861910 AAGAACAAG
1 AAGAAGAAG
* *
20861919 AACAAGAGG
1 AAGAAGAAG
20861928 AAG
1 AAG
20861931 GGAAAAAAGG
Statistics
Matches: 50, Mismatches: 16, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
9 50 1.00
ACGTcount: A:0.65, C:0.08, G:0.25, T:0.01
Consensus pattern (9 bp):
AAGAAGAAG
Found at i:20861878 original size:12 final size:12
Alignment explanation
Indices: 20861862--20861930 Score: 84
Period size: 12 Copynumber: 5.8 Consensus size: 12
20861852 GAAAAAGAGG
* *
20861862 AAGAAGAATAAG
1 AAGAAGAAGAAC
20861874 AAGAAGAAGAAC
1 AAGAAGAAGAAC
*
20861886 AAGAACAAGAAC
1 AAGAAGAAGAAC
*
20861898 AAAAAGAAGAAC
1 AAGAAGAAGAAC
*
20861910 AAGAACAAGAAC
1 AAGAAGAAGAAC
*
20861922 AAGAGGAAG
1 AAGAAGAAG
20861931 GGAAAAAAGG
Statistics
Matches: 48, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
12 48 1.00
ACGTcount: A:0.67, C:0.09, G:0.23, T:0.01
Consensus pattern (12 bp):
AAGAAGAAGAAC
Found at i:20861930 original size:24 final size:24
Alignment explanation
Indices: 20861874--20861930 Score: 96
Period size: 24 Copynumber: 2.4 Consensus size: 24
20861864 GAAGAATAAG
20861874 AAGAAGAAGAACAAGAACAAGAAC
1 AAGAAGAAGAACAAGAACAAGAAC
*
20861898 AAAAAGAAGAACAAGAACAAGAAC
1 AAGAAGAAGAACAAGAACAAGAAC
*
20861922 AAGAGGAAG
1 AAGAAGAAG
20861931 GGAAAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 30 1.00
ACGTcount: A:0.67, C:0.11, G:0.23, T:0.00
Consensus pattern (24 bp):
AAGAAGAAGAACAAGAACAAGAAC
Found at i:20863457 original size:29 final size:28
Alignment explanation
Indices: 20863422--20863477 Score: 87
Period size: 29 Copynumber: 2.0 Consensus size: 28
20863412 GCAAGATATA
20863422 CTGATTTGGCTTC-AGGCCATGAATATCAG
1 CTGATTTGGCTTCGA-GCCATG-ATATCAG
20863451 CTGATTTGGCTTCGAGCCATGATATCA
1 CTGATTTGGCTTCGAGCCATGATATCA
20863478 AGACTTCGGA
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
28 6 0.23
29 19 0.73
30 1 0.04
ACGTcount: A:0.23, C:0.21, G:0.23, T:0.32
Consensus pattern (28 bp):
CTGATTTGGCTTCGAGCCATGATATCAG
Found at i:20865405 original size:17 final size:19
Alignment explanation
Indices: 20865383--20865422 Score: 57
Period size: 17 Copynumber: 2.2 Consensus size: 19
20865373 TAATTATGAA
*
20865383 TTTTTTAT-TTTTTA-ATT
1 TTTTTTATAATTTTAGATT
20865400 TTTTTTATAATTTTAGATT
1 TTTTTTATAATTTTAGATT
20865419 TTTT
1 TTTT
20865423 AGAATTATTG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 8 0.40
18 5 0.25
19 7 0.35
ACGTcount: A:0.20, C:0.00, G:0.03, T:0.78
Consensus pattern (19 bp):
TTTTTTATAATTTTAGATT
Found at i:20865752 original size:20 final size:19
Alignment explanation
Indices: 20865704--20865753 Score: 55
Period size: 19 Copynumber: 2.6 Consensus size: 19
20865694 GTATTGATCC
*
20865704 AGTATTGATACTTTTTTCA
1 AGTATTGATAGTTTTTTCA
* * *
20865723 AATATCGATAGTTTTTGTTA
1 AGTATTGATAGTTTTT-TCA
20865743 AGTATTGATAG
1 AGTATTGATAG
20865754 ATTCAAAATT
Statistics
Matches: 24, Mismatches: 6, Indels: 1
0.77 0.19 0.03
Matches are distributed among these distances:
19 13 0.54
20 11 0.46
ACGTcount: A:0.30, C:0.06, G:0.16, T:0.48
Consensus pattern (19 bp):
AGTATTGATAGTTTTTTCA
Found at i:20870425 original size:3 final size:3
Alignment explanation
Indices: 20870419--20870451 Score: 50
Period size: 3 Copynumber: 11.0 Consensus size: 3
20870409 TTAATTGAGT
20870419 TTA TTA TTA TTA TTA TTA TTA -TA TATA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA
20870452 ATAAATTTAT
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
2 2 0.07
3 23 0.82
4 3 0.11
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (3 bp):
TTA
Found at i:20871260 original size:38 final size:39
Alignment explanation
Indices: 20871206--20871281 Score: 136
Period size: 38 Copynumber: 2.0 Consensus size: 39
20871196 AAAGAAGTAG
*
20871206 CAATCATATGTAAGATGAAGGTGAAACAAAACCATACAA
1 CAATCATACGTAAGATGAAGGTGAAACAAAACCATACAA
20871245 CAAT-ATACGTAAGATGAAGGTGAAACAAAACCATACA
1 CAATCATACGTAAGATGAAGGTGAAACAAAACCATACA
20871282 TCAAATCTAA
Statistics
Matches: 36, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
38 32 0.89
39 4 0.11
ACGTcount: A:0.51, C:0.16, G:0.16, T:0.17
Consensus pattern (39 bp):
CAATCATACGTAAGATGAAGGTGAAACAAAACCATACAA
Found at i:20872957 original size:19 final size:19
Alignment explanation
Indices: 20872933--20872980 Score: 69
Period size: 19 Copynumber: 2.5 Consensus size: 19
20872923 TAATATGTTA
* **
20872933 TATAAGAATATGATGAGTT
1 TATAAGAAAATGATGAAAT
20872952 TATAAGAAAATGATGAAAT
1 TATAAGAAAATGATGAAAT
20872971 TATAAGAAAA
1 TATAAGAAAA
20872981 AAAAAAAGAA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 26 1.00
ACGTcount: A:0.54, C:0.00, G:0.17, T:0.29
Consensus pattern (19 bp):
TATAAGAAAATGATGAAAT
Found at i:20875116 original size:4 final size:4
Alignment explanation
Indices: 20875107--20875132 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
20875097 CTTGCAACAA
20875107 AGGG AGGG AGGG AGGG AGGG AGGG AG
1 AGGG AGGG AGGG AGGG AGGG AGGG AG
20875133 AGAGAGATGC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.27, C:0.00, G:0.73, T:0.00
Consensus pattern (4 bp):
AGGG
Found at i:20881494 original size:42 final size:42
Alignment explanation
Indices: 20881432--20881512 Score: 144
Period size: 42 Copynumber: 1.9 Consensus size: 42
20881422 AACCTTTACA
* *
20881432 AAGTTGGAATCTTCATTCTAATGATGTAATCAAAGAGTTAGG
1 AAGTTGGAATCTTCAATCTAATGATGCAATCAAAGAGTTAGG
20881474 AAGTTGGAATCTTCAATCTAATGATGCAATCAAAGAGTT
1 AAGTTGGAATCTTCAATCTAATGATGCAATCAAAGAGTT
20881513 TGGTTTTTTA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 37 1.00
ACGTcount: A:0.37, C:0.11, G:0.20, T:0.32
Consensus pattern (42 bp):
AAGTTGGAATCTTCAATCTAATGATGCAATCAAAGAGTTAGG
Found at i:20885680 original size:2 final size:2
Alignment explanation
Indices: 20885673--20885705 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
20885663 ATTATTTCGG
20885673 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
20885706 TCATGTTAAG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:20886321 original size:23 final size:23
Alignment explanation
Indices: 20886291--20886338 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 23
20886281 TTAACTTAAG
20886291 TTTAAATGATAGAAT-TGTTATTA
1 TTTAAATG-TAGAATGTGTTATTA
**
20886314 TTTAAATGTTTAATGTGTTATTA
1 TTTAAATGTAGAATGTGTTATTA
20886337 TT
1 TT
20886339 GATTATTTAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
22 4 0.18
23 18 0.82
ACGTcount: A:0.33, C:0.00, G:0.12, T:0.54
Consensus pattern (23 bp):
TTTAAATGTAGAATGTGTTATTA
Found at i:20889493 original size:14 final size:13
Alignment explanation
Indices: 20889476--20889513 Score: 51
Period size: 12 Copynumber: 2.9 Consensus size: 13
20889466 AGAACGAATA
20889476 GAGAAGAGAAAAAG
1 GAGAA-AGAAAAAG
20889490 GAGAAAGAAAAA-
1 GAGAAAGAAAAAG
*
20889502 GAAAAAGAAAAA
1 GAGAAAGAAAAA
20889514 TTAGGGTTTG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
12 11 0.48
13 7 0.30
14 5 0.22
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (13 bp):
GAGAAAGAAAAAG
Found at i:20891610 original size:44 final size:42
Alignment explanation
Indices: 20891561--20891706 Score: 111
Period size: 44 Copynumber: 3.4 Consensus size: 42
20891551 TATATGTTAT
20891561 CGTGTAAGACCACGTCTAGGATGTTGGCATCGATTTGTGATTTA
1 CGTGTAAGACCACGTCTAGGATGTTGGCATCGATTT-TGA-TTA
* * ** * * *
20891605 CGTGTAAGACCATGTTTAGGACATTGACATTG-TATATGACTT-
1 CGTGTAAGACCACGTCTAGGATGTTGGCATCGAT-TTTGA-TTA
* *
20891647 CGTGTAAAACC-CTGTCTGGGATAG-TGGCATCGATATTTGATTA
1 CGTGTAAGACCAC-GTCTAGGAT-GTTGGCATCGAT-TTTGATTA
*
20891690 CATGTAAGACCACGTCT
1 CGTGTAAGACCACGTCT
20891707 GGGACGCTAG
Statistics
Matches: 77, Mismatches: 19, Indels: 13
0.71 0.17 0.12
Matches are distributed among these distances:
42 24 0.31
43 25 0.32
44 28 0.36
ACGTcount: A:0.26, C:0.17, G:0.24, T:0.33
Consensus pattern (42 bp):
CGTGTAAGACCACGTCTAGGATGTTGGCATCGATTTTGATTA
Found at i:20894361 original size:13 final size:13
Alignment explanation
Indices: 20894343--20894391 Score: 64
Period size: 13 Copynumber: 3.8 Consensus size: 13
20894333 AAATGAATGT
20894343 AAATGATAATATA
1 AAATGATAATATA
*
20894356 AAATGATAATGGT-
1 AAATGATAAT-ATA
20894369 AAATGATAATATA
1 AAATGATAATATA
*
20894382 AGATGATAAT
1 AAATGATAAT
20894392 GGTTGCTTAT
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
12 1 0.03
13 29 0.94
14 1 0.03
ACGTcount: A:0.55, C:0.00, G:0.14, T:0.31
Consensus pattern (13 bp):
AAATGATAATATA
Found at i:20894373 original size:26 final size:26
Alignment explanation
Indices: 20894341--20894394 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 26
20894331 GAAAATGAAT
20894341 GTAAATGATAATATAAAATGATAATG
1 GTAAATGATAATATAAAATGATAATG
*
20894367 GTAAATGATAATATAAGATGATAATG
1 GTAAATGATAATATAAAATGATAATG
20894393 GT
1 GT
20894395 TGCTTATATG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.50, C:0.00, G:0.19, T:0.31
Consensus pattern (26 bp):
GTAAATGATAATATAAAATGATAATG
Found at i:20896779 original size:21 final size:22
Alignment explanation
Indices: 20896754--20896795 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 22
20896744 TAAATATTTT
*
20896754 TCTTTTTCTTTTT-TTTTTTGC
1 TCTTTTTATTTTTATTTTTTGC
20896775 TCTTTTTATTTTTATTTTTTG
1 TCTTTTTATTTTTATTTTTTG
20896796 AGAACAATGG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 12 0.63
22 7 0.37
ACGTcount: A:0.05, C:0.10, G:0.05, T:0.81
Consensus pattern (22 bp):
TCTTTTTATTTTTATTTTTTGC
Found at i:20897820 original size:3 final size:3
Alignment explanation
Indices: 20897812--20897840 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
20897802 AAGATTAAAA
20897812 AAC AAC AAC AAC AAC AAC AAC AAC AAC AA
1 AAC AAC AAC AAC AAC AAC AAC AAC AAC AA
20897841 TACTAAATAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.69, C:0.31, G:0.00, T:0.00
Consensus pattern (3 bp):
AAC
Found at i:20897989 original size:16 final size:16
Alignment explanation
Indices: 20897954--20898026 Score: 67
Period size: 17 Copynumber: 4.3 Consensus size: 16
20897944 AATAATAAAT
*
20897954 AAAATAAAAAAT-TAGT
1 AAAATAAAAAATATA-A
20897970 AAAATAAAAAATATAAA
1 AAAATAAAAAATAT-AA
20897987 AAATATAAAAAATAATAA
1 AAA-ATAAAAAAT-ATAA
* *
20898005 TAAATAAAATAAAATAA
1 AAAATAAAA-AATATAA
20898022 AAAAT
1 AAAAT
20898027 GGGGTGATTA
Statistics
Matches: 48, Mismatches: 4, Indels: 9
0.79 0.07 0.15
Matches are distributed among these distances:
16 12 0.25
17 18 0.38
18 16 0.33
19 2 0.04
ACGTcount: A:0.77, C:0.00, G:0.01, T:0.22
Consensus pattern (16 bp):
AAAATAAAAAATATAA
Found at i:20897998 original size:25 final size:24
Alignment explanation
Indices: 20897890--20898026 Score: 87
Period size: 25 Copynumber: 5.0 Consensus size: 24
20897880 ATAATAATAG
20897890 TAAAAAAATACTAAAAATATAGAAATAA
1 TAAAAAAATA--AAAAATATA-AAA-AA
*
20897918 CAAAAAAAATTAAATATAAGTATAAGAATAA
1 -TAAAAAAA-TAAA-A-AA-TATAA-AA-AA
*
20897949 TAAATAAAATAAAAAAT-TAGTAAAA
1 TAAA-AAAATAAAAAATATA-AAAAA
20897974 TAAAAAATATAAAAAATATAAAAAA
1 TAAAAAA-ATAAAAAATATAAAAAA
*
20897999 TAATAATAAATAAAATAAAATAAAAAA
1 TAA-AA-AAATAAAA-AATATAAAAAA
20898026 T
1 T
20898027 GGGGTGATTA
Statistics
Matches: 91, Mismatches: 5, Indels: 26
0.75 0.04 0.21
Matches are distributed among these distances:
24 3 0.03
25 22 0.24
26 14 0.15
27 14 0.15
28 4 0.04
29 9 0.10
30 12 0.13
31 13 0.14
ACGTcount: A:0.73, C:0.01, G:0.03, T:0.23
Consensus pattern (24 bp):
TAAAAAAATAAAAAATATAAAAAA
Found at i:20898004 original size:10 final size:10
Alignment explanation
Indices: 20897972--20898025 Score: 62
Period size: 9 Copynumber: 5.7 Consensus size: 10
20897962 AAATTAGTAA
20897972 AATAAAAAAT
1 AATAAAAAAT
20897982 -ATAAAAAAT
1 AATAAAAAAT
20897991 -ATAAAAAAT
1 AATAAAAAAT
*
20898000 AATAATAAAT
1 AATAAAAAAT
20898010 AA-AATAAAAT
1 AATAA-AAAAT
20898020 AA-AAAA
1 AATAAAA
20898026 TGGGGTGATT
Statistics
Matches: 40, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
9 22 0.55
10 18 0.45
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (10 bp):
AATAAAAAAT
Found at i:20899789 original size:10 final size:10
Alignment explanation
Indices: 20899774--20899805 Score: 57
Period size: 10 Copynumber: 3.3 Consensus size: 10
20899764 TAAATACAAT
20899774 TAATTAAAGA
1 TAATTAAAGA
20899784 TAATTAAAGA
1 TAATTAAAGA
20899794 TAATTAAA-A
1 TAATTAAAGA
20899803 TAA
1 TAA
20899806 AATCCTAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
9 4 0.18
10 18 0.82
ACGTcount: A:0.62, C:0.00, G:0.06, T:0.31
Consensus pattern (10 bp):
TAATTAAAGA
Found at i:20899831 original size:27 final size:26
Alignment explanation
Indices: 20899801--20899862 Score: 70
Period size: 27 Copynumber: 2.3 Consensus size: 26
20899791 AGATAATTAA
20899801 AATAAAATCCTAAAATTAAATAATCCT
1 AATAAAATCCTAAAATT-AATAATCCT
* * * *
20899828 AATAATTATCTTAATATTAATTATCCT
1 AATAA-AATCCTAAAATTAATAATCCT
20899855 AATAAAAT
1 AATAAAAT
20899863 GGAGTCTTAT
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
26 2 0.07
27 18 0.62
28 9 0.31
ACGTcount: A:0.52, C:0.11, G:0.00, T:0.37
Consensus pattern (26 bp):
AATAAAATCCTAAAATTAATAATCCT
Done.