Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr02 99090824
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 99090824
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 317 characters in sequence are not A, C, G, or T
File 75 of 318
Found at i:21859865 original size:21 final size:21
Alignment explanation
Indices: 21859826--21859866 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
21859816 TTGACTTCGT
* **
21859826 TTTTTTTTTTTGGGTTTATTA
1 TTTTTGTTTTTGGACTTATTA
21859847 TTTTTGTTTTTGGACTTATT
1 TTTTTGTTTTTGGACTTATT
21859867 TCTGGGCTCG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.10, C:0.02, G:0.15, T:0.73
Consensus pattern (21 bp):
TTTTTGTTTTTGGACTTATTA
Found at i:21860133 original size:45 final size:45
Alignment explanation
Indices: 21860059--21860214 Score: 240
Period size: 45 Copynumber: 3.5 Consensus size: 45
21860049 GGAAGGCGAT
* * * *
21860059 ATCTGCTATCTTTGATCTGCTCCCTGTCTAATACAGAGACGCCAA
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAA
* *
21860104 ATCTATTATCTTCGATCTGCTCCCCGTCTAATACAAAGATGCCAA
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAA
*
21860149 ATCTGTTATCTTCGATTTGCTCCCCGTCTAATACAGAGATGCCAA
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAA
*
21860194 ATCTGTTATCTTGGATCTGCT
1 ATCTGTTATCTTCGATCTGCT
21860215 TCAATGAAGG
Statistics
Matches: 100, Mismatches: 11, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
45 100 1.00
ACGTcount: A:0.24, C:0.27, G:0.15, T:0.34
Consensus pattern (45 bp):
ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAA
Found at i:21860324 original size:78 final size:78
Alignment explanation
Indices: 21860157--21860512 Score: 525
Period size: 78 Copynumber: 4.5 Consensus size: 78
21860147 AAATCTGTTA
*
21860157 TCTTCGATTTGCTCCCCGTCTAATACAGAGATGCCAAATCTGTTATCTTGGATCTGCTTCAATGA
1 TCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATC----ATCTTGGATCTGCTTCAATGA
* *
21860222 AGGTCAGATTTACTATG
62 AGGTCAGATCTGCTATG
*
21860239 TCTTCGATCTGCTCTCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAATGAAGGT
1 TCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAATGAAGGT
*
21860304 CCA-ATCTGTTATG
66 -CAGATCTGCTATG
* *
21860317 TCTTCGATCTGCTCCCCGTCTAATACGGAGATGCCAAATCATCTTGGATCTACTTCAATGAAGGT
1 TCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAATGAAGGT
*
21860382 CAGATCTGCTGTG
66 CAGATCTGCTATG
* * *
21860395 TTTTCGATCTGCTCCCCGTCTAATACAGATATGCCAAATCATCTTAGATCTGCTTCAATGAAGGT
1 TCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAATGAAGGT
21860460 CAGATCTGCTATG
66 CAGATCTGCTATG
* * **
21860473 TCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATC
1 TCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATC
21860513 TGTTTCTTCG
Statistics
Matches: 250, Mismatches: 22, Indels: 8
0.89 0.08 0.03
Matches are distributed among these distances:
77 2 0.01
78 208 0.83
79 2 0.01
82 38 0.15
ACGTcount: A:0.24, C:0.24, G:0.19, T:0.33
Consensus pattern (78 bp):
TCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAATGAAGGT
CAGATCTGCTATG
Found at i:21861754 original size:263 final size:263
Alignment explanation
Indices: 21861287--21862034 Score: 1354
Period size: 263 Copynumber: 2.8 Consensus size: 263
21861277 CCCTAGATAT
* *
21861287 CGCCGCTTGAGCGTTTATATGCCAACTCCATGAAGACTTTCTTGAATTCAACATATGTTTAAAAG
1 CGCCGCTTGAGCGTTTATATGCCAGCTCCATGAAGACTTTCTTGAATTCAACATGTGTTTAAAAG
* *
21861352 ATCCAAAGTACTTTGTTGATGCCCCAATATGTAACGCACTTCACTCTTTGTTGAATCAGATATAG
66 ATCCAAAGTACTTTGTTGATGCCCCAATATGCAACGCGCTTCACTCTTTGTTGAATCAGATATAG
*
21861417 CAAGATTACCGTGTGCTCTTCAAAATTTGAGCTGCTCTTTCGGGTTTTCAACTCAAAACCCCTTT
131 CAAGATTACCGTGTGCTCTTCAAAATTTGAGCTGCCCTTTCGGGTTTTCAACTCAAAACCCCTTT
*
21861482 GGTCACAAGGCGCCCTTTGTGGGTTTTCACCTTGGCCTCTCCATTTTTTTCTTAAAACTCAAGGC
196 GGTCACAAGGCGCCCTTTGCGGGTTTTCACCTTGGCCTCTCCATTTTTTTCTTAAAACTCAAGGC
21861547 GCC
261 GCC
21861550 CGCCGCTTGAGCGTTTATATGCCAGCTCCATGAAGACTTTCTTGAATTCAACATGTGTTTAAAAG
1 CGCCGCTTGAGCGTTTATATGCCAGCTCCATGAAGACTTTCTTGAATTCAACATGTGTTTAAAAG
* *
21861615 ATCCAAAGTACTTTGTTGATTCCCCAATATGCAATGCGCTTCACTCTTTGTTGAATCAGATATAG
66 ATCCAAAGTACTTTGTTGATGCCCCAATATGCAACGCGCTTCACTCTTTGTTGAATCAGATATAG
*
21861680 CAAGATTACCGTGAGCTCTTCAAAATTTGAGCTGCCCTTTCGGGTTTTCAACTCAAAACCCCTTT
131 CAAGATTACCGTGTGCTCTTCAAAATTTGAGCTGCCCTTTCGGGTTTTCAACTCAAAACCCCTTT
* *
21861745 GGTCACAAGGCGCCCTTTGCGGGTTTTCACCTTGGCCTCTCTATTTTTTTTTTAAAACTCAAGGC
196 GGTCACAAGGCGCCCTTTGCGGGTTTTCACCTTGGCCTCTCCATTTTTTTCTTAAAACTCAAGGC
21861810 GCC
261 GCC
21861813 CGCCGCTTGAGCGTTTATATGCCAGCTCCATGAAGACTTTCTTGAATTCAACATGTGTTTAAAAG
1 CGCCGCTTGAGCGTTTATATGCCAGCTCCATGAAGACTTTCTTGAATTCAACATGTGTTTAAAAG
* *
21861878 ATCCAAAGTACTTTGTTGATGCCCCAATATGCTACGCGCTTCACTCTTTG-TGAAATTAGATATA
66 ATCCAAAGTACTTTGTTGATGCCCCAATATGCAACGCGCTTCACTCTTTGTTG-AATCAGATATA
*
21861942 GCAAGATTACCGTGTGCTCTTCAAAATTTGAGCTGCCCTTTCGAGTTTTCAACTCAAAACCCCTT
130 GCAAGATTACCGTGTGCTCTTCAAAATTTGAGCTGCCCTTTCGGGTTTTCAACTCAAAACCCCTT
21862007 TGGTCACAAGGCGCCCTTTGCGGGTTTT
195 TGGTCACAAGGCGCCCTTTGCGGGTTTT
21862035 AACTCAAAAC
Statistics
Matches: 467, Mismatches: 17, Indels: 2
0.96 0.03 0.00
Matches are distributed among these distances:
262 2 0.00
263 465 1.00
ACGTcount: A:0.24, C:0.24, G:0.18, T:0.34
Consensus pattern (263 bp):
CGCCGCTTGAGCGTTTATATGCCAGCTCCATGAAGACTTTCTTGAATTCAACATGTGTTTAAAAG
ATCCAAAGTACTTTGTTGATGCCCCAATATGCAACGCGCTTCACTCTTTGTTGAATCAGATATAG
CAAGATTACCGTGTGCTCTTCAAAATTTGAGCTGCCCTTTCGGGTTTTCAACTCAAAACCCCTTT
GGTCACAAGGCGCCCTTTGCGGGTTTTCACCTTGGCCTCTCCATTTTTTTCTTAAAACTCAAGGC
GCC
Found at i:21862039 original size:43 final size:44
Alignment explanation
Indices: 21861976--21862079 Score: 176
Period size: 43 Copynumber: 2.4 Consensus size: 44
21861966 AATTTGAGCT
*
21861976 GCCCTTT-CGAGTTTTCAACTCAAAACCCCTTTGGTCACAAGGC
1 GCCCTTTGCGGGTTTTCAACTCAAAACCCCTTTGGTCACAAGGC
21862019 GCCCTTTGCGGGTTTT-AACTCAAAACCCCTTTGGTCACAAGGC
1 GCCCTTTGCGGGTTTTCAACTCAAAACCCCTTTGGTCACAAGGC
*
21862062 GCCCTTTGCGGATTTTCA
1 GCCCTTTGCGGGTTTTCA
21862080 CCCTGAATTC
Statistics
Matches: 57, Mismatches: 2, Indels: 3
0.92 0.03 0.05
Matches are distributed among these distances:
43 49 0.86
44 8 0.14
ACGTcount: A:0.20, C:0.31, G:0.19, T:0.30
Consensus pattern (44 bp):
GCCCTTTGCGGGTTTTCAACTCAAAACCCCTTTGGTCACAAGGC
Found at i:21871215 original size:17 final size:18
Alignment explanation
Indices: 21871193--21871229 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
21871183 GATATGATAC
*
21871193 TAAAAT-TATTAAAAAAT
1 TAAAATATATAAAAAAAT
21871210 TAAAATATATAAAAAAAT
1 TAAAATATATAAAAAAAT
21871228 TA
1 TA
21871230 GGGAAACATG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 6 0.33
18 12 0.67
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (18 bp):
TAAAATATATAAAAAAAT
Found at i:21871515 original size:22 final size:21
Alignment explanation
Indices: 21871480--21871555 Score: 68
Period size: 22 Copynumber: 3.7 Consensus size: 21
21871470 AAAAGGTATC
* *
21871480 TACAAATTAAATCTCTAAGAT
1 TACAAATCATATCTCTAAGAT
21871501 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATC-TCTAAGAT
* *
21871524 TGCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
*
21871543 TGC-AATCATATCT
1 TACAAATCATATCT
21871556 AAGATTGTAT
Statistics
Matches: 46, Mismatches: 5, Indels: 9
0.77 0.08 0.15
Matches are distributed among these distances:
18 6 0.13
19 11 0.24
20 1 0.02
21 3 0.07
22 15 0.33
23 10 0.22
ACGTcount: A:0.41, C:0.17, G:0.07, T:0.36
Consensus pattern (21 bp):
TACAAATCATATCTCTAAGAT
Found at i:21871572 original size:35 final size:37
Alignment explanation
Indices: 21871509--21871606 Score: 150
Period size: 35 Copynumber: 2.7 Consensus size: 37
21871499 ATTACAAAAT
21871509 CATATC-T-TCTAAGATTGCATATCATATCTAAGATTG
1 CATATCATATCTAAGATTG-ATATCATATCTAAGATTG
21871545 CA-ATCATATCTAAGATTG-TATCATATCTAAGATTG
1 CATATCATATCTAAGATTGATATCATATCTAAGATTG
21871580 CATATCATATCTAAGATTGCATATCAT
1 CATATCATATCTAAGATTG-ATATCAT
21871607 TAAAGATTAT
Statistics
Matches: 57, Mismatches: 0, Indels: 8
0.88 0.00 0.12
Matches are distributed among these distances:
35 22 0.39
36 19 0.33
37 10 0.18
38 6 0.11
ACGTcount: A:0.36, C:0.16, G:0.10, T:0.38
Consensus pattern (37 bp):
CATATCATATCTAAGATTGATATCATATCTAAGATTG
Found at i:21871614 original size:17 final size:19
Alignment explanation
Indices: 21871516--21871606 Score: 161
Period size: 19 Copynumber: 4.9 Consensus size: 19
21871506 AATCATATCT
21871516 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
21871535 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
21871553 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
21871570 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
21871589 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
21871607 TAAAGATTAT
Statistics
Matches: 69, Mismatches: 0, Indels: 6
0.92 0.00 0.08
Matches are distributed among these distances:
17 16 0.23
18 16 0.23
19 37 0.54
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.37
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:21872132 original size:14 final size:15
Alignment explanation
Indices: 21872096--21872131 Score: 72
Period size: 15 Copynumber: 2.4 Consensus size: 15
21872086 GAGGAAAAGA
21872096 AGTTTTTATCAAATC
1 AGTTTTTATCAAATC
21872111 AGTTTTTATCAAATC
1 AGTTTTTATCAAATC
21872126 AGTTTT
1 AGTTTT
21872132 ACAAGCCATA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.31, C:0.11, G:0.08, T:0.50
Consensus pattern (15 bp):
AGTTTTTATCAAATC
Found at i:21877648 original size:17 final size:17
Alignment explanation
Indices: 21877626--21877658 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
21877616 TGTAGTTTCC
21877626 TTTGAAAGCTT-TAAAAT
1 TTTGAAA-CTTCTAAAAT
21877643 TTTGAAACTTCTAAAA
1 TTTGAAACTTCTAAAA
21877659 GAAGTTTTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 3 0.20
17 12 0.80
ACGTcount: A:0.42, C:0.09, G:0.09, T:0.39
Consensus pattern (17 bp):
TTTGAAACTTCTAAAAT
Found at i:21879303 original size:20 final size:20
Alignment explanation
Indices: 21879278--21879316 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
21879268 TTAATTAAGT
21879278 TAATTTTAATCCCAGATTAA
1 TAATTTTAATCCCAGATTAA
21879298 TAATTTTAATCCCAGATTA
1 TAATTTTAATCCCAGATTA
21879317 CCTAAAGAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.38, C:0.15, G:0.05, T:0.41
Consensus pattern (20 bp):
TAATTTTAATCCCAGATTAA
Found at i:21879929 original size:93 final size:92
Alignment explanation
Indices: 21879757--21880004 Score: 288
Period size: 93 Copynumber: 2.7 Consensus size: 92
21879747 CGTAGCTCAC
* * * *
21879757 TTCTTCACAATTTTTATTAAAA-ATTAATTTTAATCTCACATTGGCTAGAGAACACTCTT-ATAC
1 TTCTTCACTATTTTCATTAAAAGA-TAATTTTAATCTCACATTGACTAGAGAATACT-TTCATAC
*
21879820 TCACACTTACGCTATAAATAAGTGTCAAA
64 TCACACTTACGCTATAAATAAGTGACAAA
*
21879849 TTCTTCACTATTTTCATTAAAACGATAATTTTAATCTCACATTGATTAGAGAATACTTTCATA-T
1 TTCTTCACTATTTTCATTAAAA-GATAATTTTAATCTCACATTGACTAGAGAATACTTTCATACT
* *
21879913 CTACATTTAC-CTTATAAATAAGTGACAAT
65 C-ACACTTACGC-TATAAATAAGTGACAAA
* * * * * *
21879942 TTCTTCTCTATTTTCATTAAAAAGCTAATTTTAAACCCACATTGACTAGAAAATATTTTCATA
1 TTCTTCACTATTTTCATT-AAAAGATAATTTTAATCTCACATTGACTAGAGAATACTTTCATA
21880005 GTTCACTTCT
Statistics
Matches: 135, Mismatches: 15, Indels: 11
0.84 0.09 0.07
Matches are distributed among these distances:
92 25 0.19
93 105 0.78
94 5 0.04
ACGTcount: A:0.37, C:0.17, G:0.06, T:0.40
Consensus pattern (92 bp):
TTCTTCACTATTTTCATTAAAAGATAATTTTAATCTCACATTGACTAGAGAATACTTTCATACTC
ACACTTACGCTATAAATAAGTGACAAA
Found at i:21880151 original size:76 final size:77
Alignment explanation
Indices: 21880060--21880214 Score: 188
Period size: 77 Copynumber: 2.0 Consensus size: 77
21880050 AAAAAGTTAA
* ** * * *
21880060 TTTTAATCCCACATTGTCCAGAGAATGC-TC-ACATGCTCATATTTACCTTATAACTAAGTGTTA
1 TTTTAATCCCACATTGACCAGAGAACACTTCTACAT-CTCAAATTTACCTTATAAATAAGTGATA
21880123 ATTTATTCATTAT
65 ATTTATTCATTAT
** * *
21880136 TTTTAATCCTTCATTGACCAGAGAACACTTCTATATCTCAAATTTATCTTATAAATAAGTGATAA
1 TTTTAATCCCACATTGACCAGAGAACACTTCTACATCTCAAATTTACCTTATAAATAAGTGATAA
*
21880201 TTTCTTCATTAT
66 TTTATTCATTAT
21880213 TT
1 TT
21880215 AGTTAAAAAA
Statistics
Matches: 66, Mismatches: 11, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
76 23 0.35
77 40 0.61
78 3 0.05
ACGTcount: A:0.32, C:0.18, G:0.08, T:0.43
Consensus pattern (77 bp):
TTTTAATCCCACATTGACCAGAGAACACTTCTACATCTCAAATTTACCTTATAAATAAGTGATAA
TTTATTCATTAT
Found at i:21884841 original size:6 final size:6
Alignment explanation
Indices: 21884823--21884888 Score: 64
Period size: 6 Copynumber: 10.8 Consensus size: 6
21884813 AAGAAACATT
* *
21884823 ATCAGA A-CTAGA ATCAGA ATCAGA ATCAGA ATTAG- GTGACAGA ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA
*
21884872 ATCAGA ATCAGT ATCAG
1 ATCAGA ATCAGA ATCAG
21884889 GTAACAGAAT
Statistics
Matches: 50, Mismatches: 5, Indels: 10
0.77 0.08 0.15
Matches are distributed among these distances:
5 2 0.04
6 44 0.88
7 3 0.06
8 1 0.02
ACGTcount: A:0.45, C:0.15, G:0.20, T:0.20
Consensus pattern (6 bp):
ATCAGA
Found at i:21884868 original size:31 final size:31
Alignment explanation
Indices: 21884832--21884898 Score: 107
Period size: 31 Copynumber: 2.2 Consensus size: 31
21884822 TATCAGAACT
* *
21884832 AGAATCAGAATCAGAATCAGAATTAGGTGAC
1 AGAATCAGAATCAGAATCAGAATCAGGTAAC
*
21884863 AGAATCAGAATCAGAATCAGTATCAGGTAAC
1 AGAATCAGAATCAGAATCAGAATCAGGTAAC
21884894 AGAAT
1 AGAAT
21884899 AAAAAATCAG
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.46, C:0.13, G:0.21, T:0.19
Consensus pattern (31 bp):
AGAATCAGAATCAGAATCAGAATCAGGTAAC
Found at i:21885090 original size:27 final size:26
Alignment explanation
Indices: 21885048--21885148 Score: 103
Period size: 27 Copynumber: 3.8 Consensus size: 26
21885038 GCTTAGTTAT
* *
21885048 CAGATATTGTGACAGAGTCACCAAATA
1 CAGATATTGTGGCAGAGCCACCAAA-A
*
21885075 CAGATATTGTGGCAGAGCCACCAGAA
1 CAGATATTGTGGCAGAGCCACCAAAA
* *
21885101 CAGATATTTATGGCATAGCCACCAAAAA
1 CAGATA-TTGTGGCAGAGCCACC-AAAA
* * *
21885129 GAGATAATGTGGCAAAGCCA
1 CAGATATTGTGGCAGAGCCA
21885149 TTGATAACTG
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
26 7 0.11
27 47 0.76
28 8 0.13
ACGTcount: A:0.40, C:0.20, G:0.22, T:0.19
Consensus pattern (26 bp):
CAGATATTGTGGCAGAGCCACCAAAA
Found at i:21885309 original size:22 final size:21
Alignment explanation
Indices: 21885281--21885345 Score: 60
Period size: 22 Copynumber: 3.0 Consensus size: 21
21885271 GCAAATACGT
21885281 TTGGCACACAACCATAATCAGG
1 TTGGCACA-AACCATAATCAGG
* *
21885303 TTGGCACAGAGCCAT-ATGTAGG
1 TTGGCACA-AACCATAAT-CAGG
*
21885325 TTGACACAAAGCCATAATCAG
1 TTGGCACAAA-CCATAATCAG
21885346 AAGGCTTTAA
Statistics
Matches: 34, Mismatches: 6, Indels: 6
0.74 0.13 0.13
Matches are distributed among these distances:
21 3 0.09
22 29 0.85
23 2 0.06
ACGTcount: A:0.35, C:0.23, G:0.22, T:0.20
Consensus pattern (21 bp):
TTGGCACAAACCATAATCAGG
Found at i:21885810 original size:27 final size:27
Alignment explanation
Indices: 21885780--21886102 Score: 380
Period size: 27 Copynumber: 12.0 Consensus size: 27
21885770 ATGATAGTTT
* * *
21885780 TACCCCACAAGGGTATCTCGGTAATTC
1 TACCCTACAAGGGTATTTCAGTAATTC
*
21885807 TACCCTACAGGGGTATTTCAGTAATTC
1 TACCCTACAAGGGTATTTCAGTAATTC
* *
21885834 TACCCTAC-AGGATTATTTCGGTAATTC
1 TACCCTACAAGG-GTATTTCAGTAATTC
* *
21885861 TACCTTACAGGGGTATTTCAGTAATTC
1 TACCCTACAAGGGTATTTCAGTAATTC
21885888 TACCCTACAAGGGTATTTCAGTAATTC
1 TACCCTACAAGGGTATTTCAGTAATTC
* * *
21885915 TATCCTACAAGGGTATTTCGGTATTTC
1 TACCCTACAAGGGTATTTCAGTAATTC
*
21885942 TACCCTACAGGGGTATTTCAGTAATTC
1 TACCCTACAAGGGTATTTCAGTAATTC
* * *
21885969 TACTCTACAGGGGTATTTTAGTAATTC
1 TACCCTACAAGGGTATTTCAGTAATTC
* * * *
21885996 TACCCTATAGGGGTATTTCGGTATTTC
1 TACCCTACAAGGGTATTTCAGTAATTC
* **
21886023 TACCCTACAATGGTATTTTGGTAATTC
1 TACCCTACAAGGGTATTTCAGTAATTC
* * *
21886050 TACCCTA-TAGTGGTATTTTAATAATTC
1 TACCCTACAAG-GGTATTTCAGTAATTC
*
21886077 TACCCTACAAGGGTATTTCAATAATT
1 TACCCTACAAGGGTATTTCAGTAATT
21886103 TTATAAATCG
Statistics
Matches: 254, Mismatches: 38, Indels: 8
0.85 0.13 0.03
Matches are distributed among these distances:
26 3 0.01
27 247 0.97
28 4 0.02
ACGTcount: A:0.26, C:0.20, G:0.17, T:0.37
Consensus pattern (27 bp):
TACCCTACAAGGGTATTTCAGTAATTC
Found at i:21886119 original size:27 final size:27
Alignment explanation
Indices: 21886086--21886344 Score: 253
Period size: 27 Copynumber: 9.7 Consensus size: 27
21886076 CTACCCTACA
* *
21886086 AGGGTATTTCAATAATTTTATAAATCG
1 AGGGTATTTCAGTAATTTTACAAATCG
** * *
21886113 AATGTATTTTAGTAATTTTGCAAA-CTG
1 AGGGTATTTCAGTAATTTTACAAATC-G
*
21886140 AGGGTATTTCAATAATTTTACAAATCG
1 AGGGTATTTCAGTAATTTTACAAATCG
21886167 AGGGTATTTCAGTAATTTTAC-AATCG
1 AGGGTATTTCAGTAATTTTACAAATCG
* * * *
21886193 ACGGTATTTCGGTAATTTTATAAACCG
1 AGGGTATTTCAGTAATTTTACAAATCG
* * *
21886220 -GGGTACTTT-GGTAATTTTACAAGTCA
1 AGGGTA-TTTCAGTAATTTTACAAATCG
21886246 AGGGTATTTCAGTAATTTTAC-AATCG
1 AGGGTATTTCAGTAATTTTACAAATCG
* * *
21886272 ACGGTATTTCGGTAATTTTATAAATCG
1 AGGGTATTTCAGTAATTTTACAAATCG
* * * *
21886299 GGGGTACTTT-GGTAATTTTACAACTGG
1 AGGGTA-TTTCAGTAATTTTACAAATCG
21886326 A-GGTATTTCAGTAATTTTA
1 AGGGTATTTCAGTAATTTTA
21886345 GTAAACTAAA
Statistics
Matches: 189, Mismatches: 34, Indels: 19
0.78 0.14 0.08
Matches are distributed among these distances:
25 3 0.02
26 78 0.41
27 104 0.55
28 4 0.02
ACGTcount: A:0.31, C:0.10, G:0.19, T:0.40
Consensus pattern (27 bp):
AGGGTATTTCAGTAATTTTACAAATCG
Found at i:21886120 original size:54 final size:54
Alignment explanation
Indices: 21886062--21886167 Score: 133
Period size: 54 Copynumber: 2.0 Consensus size: 54
21886052 CCCTATAGTG
** *
21886062 GTATTTTAATAATTCTACCCTAC-AAGGGTATTTCAATAATTTTATAAATCGAAT
1 GTATTTTAATAATT-TACCAAACTAAGGGTATTTCAATAATTTTACAAATCGAAT
* ** *
21886116 GTATTTTAGTAATTTTGCAAACTGAGGGTATTTCAATAATTTTACAAATCGA
1 GTATTTTAATAATTTACCAAACTAAGGGTATTTCAATAATTTTACAAATCGA
21886168 GGGTATTTCA
Statistics
Matches: 44, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
53 4 0.09
54 40 0.91
ACGTcount: A:0.36, C:0.11, G:0.12, T:0.41
Consensus pattern (54 bp):
GTATTTTAATAATTTACCAAACTAAGGGTATTTCAATAATTTTACAAATCGAAT
Found at i:21886250 original size:79 final size:79
Alignment explanation
Indices: 21886084--21886344 Score: 319
Period size: 79 Copynumber: 3.3 Consensus size: 79
21886074 TTCTACCCTA
* * ** ** ** *
21886084 CAAGGGTATTTCAATAATTTTATAAATCGAATGTATTTTAGTAATTTTGCAAACTGAGGGTA-TT
1 CAAGGGTATTTCAGTAATTTTA-CAATCGACGGTATTTCGGTAATTTTATAAACCG-GGGTACTT
**
21886148 TCAATAATTTTACAAAT
64 T-GGTAATTTTACAAAT
*
21886165 CGAGGGTATTTCAGTAATTTTACAATCGACGGTATTTCGGTAATTTTATAAACCGGGGTACTTTG
1 CAAGGGTATTTCAGTAATTTTACAATCGACGGTATTTCGGTAATTTTATAAACCGGGGTACTTTG
*
21886230 GTAATTTTACAAGT
66 GTAATTTTACAAAT
*
21886244 CAAGGGTATTTCAGTAATTTTACAATCGACGGTATTTCGGTAATTTTATAAATCGGGGGTACTTT
1 CAAGGGTATTTCAGTAATTTTACAATCGACGGTATTTCGGTAATTTTATAAA-CCGGGGTACTTT
*
21886309 GGTAATTTTACAACT
65 GGTAATTTTACAAAT
**
21886324 GGA-GGTATTTCAGTAATTTTA
1 CAAGGGTATTTCAGTAATTTTA
21886345 GTAAACTAAA
Statistics
Matches: 160, Mismatches: 18, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
79 86 0.54
80 54 0.34
81 20 0.12
ACGTcount: A:0.31, C:0.11, G:0.19, T:0.39
Consensus pattern (79 bp):
CAAGGGTATTTCAGTAATTTTACAATCGACGGTATTTCGGTAATTTTATAAACCGGGGTACTTTG
GTAATTTTACAAAT
Found at i:21886252 original size:53 final size:53
Alignment explanation
Indices: 21886084--21886344 Score: 210
Period size: 53 Copynumber: 4.9 Consensus size: 53
21886074 TTCTACCCTA
* * * ** * * *
21886084 CAAGGGTATTTCAATAATTTTATAAATCGAATGTATTTTAGTAATTTTGCAAA
1 CAAGGGTATTTCAGTAATTTTACAAACCGAGGGTATTTCAGTAATTTTACAAT
* * *
21886137 CTGAGGGTATTTCAATAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAT
1 C-AAGGGTATTTCAGTAATTTTACAAACCGAGGGTATTTCAGTAATTTTACAAT
* * * * *
21886191 CGACGGTATTTCGGTAATTTTATAAACCG-GGGTACTTT-GGTAATTTTACAAGT
1 CAAGGGTATTTCAGTAATTTTACAAACCGAGGGTA-TTTCAGTAATTTTACAA-T
* * * *
21886244 CAAGGGTATTTCAGTAATTTTAC-AATCGACGGTATTTCGGTAATTTTATAAAT
1 CAAGGGTATTTCAGTAATTTTACAAACCGAGGGTATTTCAGTAATTTTA-CAAT
** * *
21886297 CGGGGGTACTTT-GGTAATTTTAC-AACTG-GAGGTATTTCAGTAATTTTA
1 CAAGGGTA-TTTCAGTAATTTTACAAACCGAG-GGTATTTCAGTAATTTTA
21886345 GTAAACTAAA
Statistics
Matches: 173, Mismatches: 27, Indels: 16
0.80 0.12 0.07
Matches are distributed among these distances:
52 24 0.14
53 98 0.57
54 51 0.29
ACGTcount: A:0.31, C:0.11, G:0.19, T:0.39
Consensus pattern (53 bp):
CAAGGGTATTTCAGTAATTTTACAAACCGAGGGTATTTCAGTAATTTTACAAT
Found at i:21888309 original size:6 final size:6
Alignment explanation
Indices: 21888291--21888379 Score: 67
Period size: 6 Copynumber: 14.3 Consensus size: 6
21888281 AAGAAACATT
* *
21888291 ATCAGA A-CTAGA ATCAGA ATCAGA ATCAGA ATTAG- GTGACAGA ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA
* *
21888340 ATCAGA ATCAGT ATCAGGTA A-CAGA ATCAAAA ATCAGA AT
1 ATCAGA ATCAGA ATCA-G-A ATCAGA ATC-AGA ATCAGA AT
21888380 GTGAATGCAA
Statistics
Matches: 66, Mismatches: 8, Indels: 18
0.72 0.09 0.20
Matches are distributed among these distances:
5 4 0.06
6 49 0.74
7 11 0.17
8 2 0.03
ACGTcount: A:0.48, C:0.15, G:0.18, T:0.19
Consensus pattern (6 bp):
ATCAGA
Found at i:21888336 original size:31 final size:31
Alignment explanation
Indices: 21888300--21888379 Score: 115
Period size: 31 Copynumber: 2.5 Consensus size: 31
21888290 TATCAGAACT
* *
21888300 AGAATCAGAATCAGAATCAGAATTAGGTGAC
1 AGAATCAGAATCAGAATCAGAATCAGGTAAC
*
21888331 AGAATCAGAATCAGAATCAGTATCAGGTAAC
1 AGAATCAGAATCAGAATCAGAATCAGGTAAC
*
21888362 AGAATCAAAAATCAGAAT
1 AGAATC-AGAATCAGAAT
21888380 GTGAATGCAA
Statistics
Matches: 44, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
31 34 0.77
32 10 0.23
ACGTcount: A:0.49, C:0.14, G:0.19, T:0.19
Consensus pattern (31 bp):
AGAATCAGAATCAGAATCAGAATCAGGTAAC
Found at i:21888558 original size:27 final size:26
Alignment explanation
Indices: 21888516--21888617 Score: 123
Period size: 27 Copynumber: 3.8 Consensus size: 26
21888506 GCTCAGTTAT
* *
21888516 CAGATATTGTGACAGAGTCACCAGATA
1 CAGATATTGTGGCAGAGCCACCAGA-A
21888543 CAGATATTGTGGCAGAGCCACCAGAA
1 CAGATATTGTGGCAGAGCCACCAGAA
*
21888569 CAGATATTTGTGGCATAGCCACCAGAAA
1 CAGATA-TTGTGGCAGAGCCACCAG-AA
* * *
21888597 GAGATAATGTGGCAAAGCCAC
1 CAGATATTGTGGCAGAGCCAC
21888618 TTAACAGAAT
Statistics
Matches: 67, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
26 7 0.10
27 53 0.79
28 7 0.10
ACGTcount: A:0.36, C:0.21, G:0.25, T:0.19
Consensus pattern (26 bp):
CAGATATTGTGGCAGAGCCACCAGAA
Found at i:21888804 original size:22 final size:22
Alignment explanation
Indices: 21888776--21888840 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
21888766 GCAAATACGT
*
21888776 TTGGCACACAGCCATAATCAGG
1 TTGGCACAAAGCCATAATCAGG
* *
21888798 TTGGCACAGAGCCAT-ATGTAGG
1 TTGGCACAAAGCCATAAT-CAGG
*
21888820 TTGACACAAAGCCATAATCAG
1 TTGGCACAAAGCCATAATCAG
21888841 AAGGCTTTAA
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
21 2 0.06
22 32 0.89
23 2 0.06
ACGTcount: A:0.34, C:0.23, G:0.23, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAATCAGG
Found at i:21889297 original size:27 final size:27
Alignment explanation
Indices: 21889275--21889624 Score: 457
Period size: 27 Copynumber: 13.0 Consensus size: 27
21889265 ATGGTAGTTT
* * * *
21889275 TACCCCACAAGGGTATCTCGGTAATTC
1 TACCCTACAGGGGTATTTCAGTAATTC
21889302 TACCCTACAGGGGTATTTCAGTAATTC
1 TACCCTACAGGGGTATTTCAGTAATTC
** *
21889329 TACCCTACAGGATTATTTCGGTAATTC
1 TACCCTACAGGGGTATTTCAGTAATTC
*
21889356 TACCTTACAGGGGTATTTCAGTAATTC
1 TACCCTACAGGGGTATTTCAGTAATTC
*
21889383 TACCCTACATGGGTATTTCAGTAATTC
1 TACCCTACAGGGGTATTTCAGTAATTC
21889410 TACCCTACAGGGGTATTTCAGTAATTC
1 TACCCTACAGGGGTATTTCAGTAATTC
* * *
21889437 TACCCTACAAGGGTATTTCGGTATTTC
1 TACCCTACAGGGGTATTTCAGTAATTC
21889464 TACCCTACAGGGGTATTTCAGTAATTC
1 TACCCTACAGGGGTATTTCAGTAATTC
*
21889491 TACCCTACAGGGGTATTTTAGTAATTC
1 TACCCTACAGGGGTATTTCAGTAATTC
* ** *
21889518 TACCCTATAGGGGTATTTTGGTATTTC
1 TACCCTACAGGGGTATTTCAGTAATTC
** *
21889545 TACCCTACAACGGTATTTCGGTAATTC
1 TACCCTACAGGGGTATTTCAGTAATTC
* * * *
21889572 TACCCTATAGTGGTATTTTAATAATTC
1 TACCCTACAGGGGTATTTCAGTAATTC
* * *
21889599 TTCCCTACAAGGGTATTTCAATAATT
1 TACCCTACAGGGGTATTTCAGTAATT
21889625 TTATAAATCG
Statistics
Matches: 283, Mismatches: 40, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 283 1.00
ACGTcount: A:0.26, C:0.21, G:0.17, T:0.36
Consensus pattern (27 bp):
TACCCTACAGGGGTATTTCAGTAATTC
Found at i:21889638 original size:27 final size:27
Alignment explanation
Indices: 21889608--21889818 Score: 186
Period size: 27 Copynumber: 7.9 Consensus size: 27
21889598 CTTCCCTACA
*
21889608 AGGGTATTTCAATAATTTTATAAATCG
1 AGGGTATTTCAGTAATTTTATAAATCG
*
21889635 AGGGTATTTCAGTAATTTTA-CAATCG
1 AGGGTATTTCAGTAATTTTATAAATCG
* *
21889661 ATGGTATTTCAATAATTTTATAAA-CTG
1 AGGGTATTTCAGTAATTTTATAAATC-G
* * * *
21889688 GGGGTACTTT-GGTAATTTTACAAGTCG
1 AGGGTA-TTTCAGTAATTTTATAAATCG
*
21889715 AGGGTATTTCAGTAATTTTA-CAATCG
1 AGGGTATTTCAGTAATTTTATAAATCG
*
21889741 ATGGTATTTC-GATAATTTTATAAATCG
1 AGGGTATTTCAG-TAATTTTATAAATCG
* * * *
21889768 -GGAGTACTTT-GGTAATTTTACAACTAG
1 AGG-GTA-TTTCAGTAATTTTATAAATCG
21889795 -GGGTATTTCAGTAATTTTAGTAAA
1 AGGGTATTTCAGTAATTTTA-TAAA
21889819 CTAAAGTATT
Statistics
Matches: 148, Mismatches: 24, Indels: 24
0.76 0.12 0.12
Matches are distributed among these distances:
25 4 0.03
26 61 0.41
27 75 0.51
28 8 0.05
ACGTcount: A:0.32, C:0.09, G:0.19, T:0.40
Consensus pattern (27 bp):
AGGGTATTTCAGTAATTTTATAAATCG
Found at i:21889678 original size:53 final size:53
Alignment explanation
Indices: 21889608--21889760 Score: 195
Period size: 53 Copynumber: 2.9 Consensus size: 53
21889598 CTTCCCTACA
21889608 AGGGTATTTCAATAATTTTATAAATCGAGGGTATTTCAGTAATTTTACAA-TCG
1 AGGGTATTTCAATAATTTTATAAATCGAGGGTATTTC-GTAATTTTACAAGTCG
* * *
21889661 ATGGTATTTCAATAATTTTATAAA-CTGGGGGTACTTTGGTAATTTTACAAGTCG
1 AGGGTATTTCAATAATTTTATAAATC-GAGGGTA-TTTCGTAATTTTACAAGTCG
* * *
21889715 AGGGTATTTCAGTAATTTTA-CAATCGATGGTATTTCGATAATTTTA
1 AGGGTATTTCAATAATTTTATAAATCGAGGGTATTTCG-TAATTTTA
21889761 TAAATCGGGA
Statistics
Matches: 86, Mismatches: 9, Indels: 10
0.82 0.09 0.10
Matches are distributed among these distances:
52 5 0.06
53 56 0.65
54 25 0.29
ACGTcount: A:0.31, C:0.09, G:0.18, T:0.41
Consensus pattern (53 bp):
AGGGTATTTCAATAATTTTATAAATCGAGGGTATTTCGTAATTTTACAAGTCG
Found at i:21889704 original size:80 final size:80
Alignment explanation
Indices: 21889620--21889813 Score: 311
Period size: 80 Copynumber: 2.4 Consensus size: 80
21889610 GGTATTTCAA
*
21889620 TAATTTTATAAATCGAGGGTATTTCAGTAATTTTACAATCGATGGTATTTCAATAATTTTATAAA
1 TAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAATCGATGGTATTTCAATAATTTTATAAA
*
21889685 -CTGGGGGTACTTTGG
66 TC-GGGAGTACTTTGG
* *
21889700 TAATTTTACAAGTCGAGGGTATTTCAGTAATTTTACAATCGATGGTATTTCGATAATTTTATAAA
1 TAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAATCGATGGTATTTCAATAATTTTATAAA
21889765 TCGGGAGTACTTTGG
66 TCGGGAGTACTTTGG
* *
21889780 TAATTTTACAACTAG-GGGTATTTCAGTAATTTTA
1 TAATTTTACAAATCGAGGGTATTTCAGTAATTTTA
21889814 GTAAACTAAA
Statistics
Matches: 107, Mismatches: 6, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
79 19 0.18
80 87 0.81
81 1 0.01
ACGTcount: A:0.31, C:0.09, G:0.19, T:0.41
Consensus pattern (80 bp):
TAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAATCGATGGTATTTCAATAATTTTATAAA
TCGGGAGTACTTTGG
Found at i:21893213 original size:6 final size:6
Alignment explanation
Indices: 21893202--21893229 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
21893192 CTGTGTGTTC
21893202 TTTATT TTTATT TTTATT TTTATT TTTA
1 TTTATT TTTATT TTTATT TTTATT TTTA
21893230 ATTTAATTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (6 bp):
TTTATT
Found at i:21893238 original size:18 final size:18
Alignment explanation
Indices: 21893202--21893238 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
21893192 CTGTGTGTTC
* *
21893202 TTTATTTTTATTTTTATT
1 TTTATTTTTAATTTAATT
21893220 TTTATTTTTAATTTAATT
1 TTTATTTTTAATTTAATT
21893238 T
1 T
21893239 AATTTATTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (18 bp):
TTTATTTTTAATTTAATT
Found at i:21901852 original size:25 final size:24
Alignment explanation
Indices: 21901815--21901861 Score: 67
Period size: 25 Copynumber: 1.9 Consensus size: 24
21901805 TTATAAAAAA
21901815 GAAAAATATCTTTAGAAATTTTAT
1 GAAAAATATCTTTAGAAATTTTAT
* *
21901839 GAAATAATTTCTTTAGAGATTTT
1 GAAA-AATATCTTTAGAAATTTT
21901862 TTCTCTATAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 4 0.20
25 16 0.80
ACGTcount: A:0.40, C:0.04, G:0.11, T:0.45
Consensus pattern (24 bp):
GAAAAATATCTTTAGAAATTTTAT
Found at i:21902078 original size:50 final size:50
Alignment explanation
Indices: 21901983--21902080 Score: 128
Period size: 50 Copynumber: 2.0 Consensus size: 50
21901973 ATCACTTAAA
* ** *
21901983 TATTAAATTAATATAATATTTATCATTAGATTAAATTTAATATTAAATCT
1 TATTAAATTAATAGAATATTTATCACAAGATTAAAATTAATATTAAATCT
21902033 TATTAAATTAATAGAATATTTATCTACAAGA-TAAACATTAA-ATTAAAT
1 TATTAAATTAATAGAATATTTATC-ACAAGATTAAA-ATTAATATTAAAT
21902081 TTAATATTAA
Statistics
Matches: 42, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
50 34 0.81
51 8 0.19
ACGTcount: A:0.49, C:0.05, G:0.03, T:0.43
Consensus pattern (50 bp):
TATTAAATTAATAGAATATTTATCACAAGATTAAAATTAATATTAAATCT
Found at i:21902116 original size:20 final size:18
Alignment explanation
Indices: 21902069--21902116 Score: 55
Period size: 20 Copynumber: 2.6 Consensus size: 18
21902059 CAAGATAAAC
21902069 ATTAAATTAA-ATTTAAT
1 ATTAAATTAATATTTAAT
21902086 ATTAAGA-TAATTACTTTAAT
1 ATTAA-ATTAA-TA-TTTAAT
21902106 ATTAAATTAAT
1 ATTAAATTAAT
21902117 GAAATACTAT
Statistics
Matches: 26, Mismatches: 0, Indels: 8
0.76 0.00 0.24
Matches are distributed among these distances:
17 8 0.31
18 1 0.04
19 3 0.12
20 14 0.54
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.46
Consensus pattern (18 bp):
ATTAAATTAATATTTAAT
Found at i:21906332 original size:24 final size:24
Alignment explanation
Indices: 21906305--21906367 Score: 126
Period size: 24 Copynumber: 2.6 Consensus size: 24
21906295 CTTATTATGT
21906305 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
21906329 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
21906353 TCGCACACATAGTGC
1 TCGCACACATAGTGC
21906368 ATTTGAGATT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 39 1.00
ACGTcount: A:0.35, C:0.27, G:0.17, T:0.21
Consensus pattern (24 bp):
TCGCACACATAGTGCCATAGTAAA
Found at i:21916318 original size:14 final size:14
Alignment explanation
Indices: 21916299--21916326 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
21916289 CATTCATATC
21916299 TTATTCATACCTAA
1 TTATTCATACCTAA
21916313 TTATTCATACCTAA
1 TTATTCATACCTAA
21916327 CATGTTGTAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.21, G:0.00, T:0.43
Consensus pattern (14 bp):
TTATTCATACCTAA
Found at i:21921703 original size:23 final size:23
Alignment explanation
Indices: 21921673--21921718 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
21921663 TAAATTCAAG
*
21921673 AATGTCAAAATGTGTCTTTTATT
1 AATGTCAAAATATGTCTTTTATT
21921696 AATGTCAAAATATGTCTTTTATT
1 AATGTCAAAATATGTCTTTTATT
21921719 CTTAAAAAGT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.33, C:0.09, G:0.11, T:0.48
Consensus pattern (23 bp):
AATGTCAAAATATGTCTTTTATT
Found at i:21922194 original size:32 final size:32
Alignment explanation
Indices: 21922158--21922223 Score: 114
Period size: 32 Copynumber: 2.1 Consensus size: 32
21922148 ACTGAGTACA
21922158 TAATTAAATATAAATGTTAGAAATATTCGTAG
1 TAATTAAATATAAATGTTAGAAATATTCGTAG
* *
21922190 TAATTAAATATAAATGTTAGATATATTTGTAG
1 TAATTAAATATAAATGTTAGAAATATTCGTAG
21922222 TA
1 TA
21922224 CATACTCTTT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.45, C:0.02, G:0.12, T:0.41
Consensus pattern (32 bp):
TAATTAAATATAAATGTTAGAAATATTCGTAG
Found at i:21924092 original size:15 final size:15
Alignment explanation
Indices: 21924072--21924105 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
21924062 GAAGCATATA
*
21924072 CACAACCAATTCAAC
1 CACAACCAAGTCAAC
*
21924087 CACAACCAAGTCATC
1 CACAACCAAGTCAAC
21924102 CACA
1 CACA
21924106 CATTAATTAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.44, C:0.41, G:0.03, T:0.12
Consensus pattern (15 bp):
CACAACCAAGTCAAC
Found at i:21924716 original size:20 final size:20
Alignment explanation
Indices: 21924679--21924716 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
21924669 GTACCATCTT
**
21924679 ACAACATACCATTGTCTTCC
1 ACAACATACCATAATCTTCC
21924699 ACAACATACCATAATCTT
1 ACAACATACCATAATCTT
21924717 TCATAACTTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.37, C:0.32, G:0.03, T:0.29
Consensus pattern (20 bp):
ACAACATACCATAATCTTCC
Found at i:21924875 original size:43 final size:42
Alignment explanation
Indices: 21924809--21924920 Score: 161
Period size: 43 Copynumber: 2.6 Consensus size: 42
21924799 TACCATACCA
* **
21924809 ATGCCATATCCCAGATATAGTCTTACATGGGATCTCATATCG
1 ATGCCATATCCCAGATATGGTCTTACATGAAATCTCATATCG
* *
21924851 ATGCCAATAGCCCAGCTATGGTCTTACATGAAATCTCATATCG
1 ATGCC-ATATCCCAGATATGGTCTTACATGAAATCTCATATCG
*
21924894 ATGCCATATTCCAGATATGGTCTTACA
1 ATGCCATATCCCAGATATGGTCTTACA
21924921 CGTAATATCA
Statistics
Matches: 61, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
42 24 0.39
43 37 0.61
ACGTcount: A:0.29, C:0.24, G:0.16, T:0.30
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACATGAAATCTCATATCG
Found at i:21936147 original size:25 final size:25
Alignment explanation
Indices: 21936113--21936181 Score: 75
Period size: 25 Copynumber: 2.8 Consensus size: 25
21936103 GTGAATTGAT
* * *
21936113 CTGAAATTGTTTTTGATAGTATATC
1 CTGAAATTGTTATAGATAGTATATA
*
21936138 CTGAAATTGTTATAGGTAGTATATA
1 CTGAAATTGTTATAGATAGTATATA
* * *
21936163 CTGAGACTGCTATAGATAG
1 CTGAAATTGTTATAGATAG
21936182 GCTGTACTGA
Statistics
Matches: 36, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
25 36 1.00
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.39
Consensus pattern (25 bp):
CTGAAATTGTTATAGATAGTATATA
Found at i:21944819 original size:21 final size:21
Alignment explanation
Indices: 21944795--21944836 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
21944785 GGCCCTGTTC
21944795 AGGGCCTACATATTGGTACCT
1 AGGGCCTACATATTGGTACCT
* **
21944816 AGGGTCTAGGTATTGGTACCT
1 AGGGCCTACATATTGGTACCT
21944837 GAGTCCTTAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.21, C:0.19, G:0.29, T:0.31
Consensus pattern (21 bp):
AGGGCCTACATATTGGTACCT
Found at i:21946167 original size:17 final size:18
Alignment explanation
Indices: 21946125--21946173 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
21946115 AGTTGAAAAG
21946125 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
21946144 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
21946161 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
21946174 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:21947057 original size:40 final size:40
Alignment explanation
Indices: 21946991--21947157 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
21946981 AAATTGAATG
* * *
21946991 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * **
21947030 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
21947070 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
21947110 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
21947150 ATATCCGG
1 ATATCCGG
21947158 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:21954166 original size:17 final size:18
Alignment explanation
Indices: 21954124--21954172 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
21954114 AGTTGAAAAG
21954124 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
21954143 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
21954160 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
21954173 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:21955055 original size:40 final size:40
Alignment explanation
Indices: 21954989--21955155 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
21954979 AAATTGAATG
* * *
21954989 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * **
21955028 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
21955068 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
21955108 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
21955148 ATATCCGG
1 ATATCCGG
21955156 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:21958366 original size:18 final size:18
Alignment explanation
Indices: 21958343--21958377 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
21958333 TTTATTTGCT
* *
21958343 TGTGAGGTTTAACTTTCA
1 TGTGAGGCTAAACTTTCA
21958361 TGTGAGGCTAAACTTTC
1 TGTGAGGCTAAACTTTC
21958378 TTACCTTGAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.23, C:0.14, G:0.23, T:0.40
Consensus pattern (18 bp):
TGTGAGGCTAAACTTTCA
Found at i:21965667 original size:87 final size:86
Alignment explanation
Indices: 21965418--21965681 Score: 313
Period size: 86 Copynumber: 3.1 Consensus size: 86
21965408 ATTATATCAA
* * * * *
21965418 AATAAAATCTGTAAAATGGCAGGAATAAATCCCAAAACAGATTTTATTTAA-TTTAA-TTCTA-A
1 AATAAATTCTGTTAAA-CGCAGGAATAAATCCCAAAATAGATTTTATTTAATTTTAATTTCTATT
** **
21965480 TTTGAAAACAAAAT-AAAATCA
65 TTTGGCAACAAAATCAAAATGT
** * * *
21965501 AATAAATTCTTGTTAAACGGGGGAATAAATCCCTAAATAGATTTTAATTAATTTTAATTTTTATT
1 AATAAATTC-TGTTAAACGCAGGAATAAATCCCAAAATAGATTTTATTTAATTTTAATTTCTATT
21965566 TTTGGCAACAAAATCAAAATGT
65 TTTGGCAACAAAATCAAAATGT
* *
21965588 AATAAATTC-GTTGAACAGCAGGAACAAATCCCAAAATAGATTTTATTTAATTTTAATTTCTCAT
1 AATAAATTCTGTTAAAC-GCAGGAATAAATCCCAAAATAGATTTTATTTAATTTTAATTTCT-AT
21965652 TTTTGGCAACAAAATCAAAATGT
64 TTTTGGCAACAAAATCAAAATGT
21965675 AATAAAT
1 AATAAAT
21965682 CCATTGAATG
Statistics
Matches: 153, Mismatches: 21, Indels: 10
0.83 0.11 0.05
Matches are distributed among these distances:
83 36 0.24
84 11 0.07
85 10 0.07
86 50 0.33
87 46 0.30
ACGTcount: A:0.45, C:0.11, G:0.10, T:0.34
Consensus pattern (86 bp):
AATAAATTCTGTTAAACGCAGGAATAAATCCCAAAATAGATTTTATTTAATTTTAATTTCTATTT
TTGGCAACAAAATCAAAATGT
Found at i:21965689 original size:87 final size:85
Alignment explanation
Indices: 21965436--21965724 Score: 309
Period size: 87 Copynumber: 3.4 Consensus size: 85
21965426 CTGTAAAATG
* * **
21965436 GCAGGAATAAATCCCAAAACAGATTTTATTTAA-TTTAA-TTCTA-ATTTGAAAACAAAAT-AAA
1 GCAGGAATAAATCCCAAAATAGATTTTATTTAATTTTAATTTCTATTTTTGGCAACAAAATCAAA
**
21965497 ATCAAATAAATTCTTGTTAAAC
66 ATGTAATAAATTCTTG--AAAC
** * * *
21965519 GGGGGAATAAATCCCTAAATAGATTTTAATTAATTTTAATTTTTATTTTTGGCAACAAAATCAAA
1 GCAGGAATAAATCCCAAAATAGATTTTATTTAATTTTAATTTCTATTTTTGGCAACAAAATCAAA
21965584 ATGTAATAAATTCGTTG-AAC
66 ATGTAATAAATTC-TTGAAAC
*
21965604 AGCAGGAACAAATCCCAAAATAGATTTTATTTAATTTTAATTTCTCATTTTTGGCAACAAAATCA
1 -GCAGGAATAAATCCCAAAATAGATTTTATTTAATTTTAATTTCT-ATTTTTGGCAACAAAATCA
* **
21965669 AAATGTAATAAATCCATTGAATG
64 AAATGTAATAAATTC-TTGAAAC
* * * *
21965692 GCGGGAATAAATCCCGAAACAAATTTTAATTTA
1 GCAGGAATAAATCCCAAAATAGATTTT-ATTTA
21965725 GCTTTAATAC
Statistics
Matches: 171, Mismatches: 26, Indels: 13
0.81 0.12 0.06
Matches are distributed among these distances:
83 28 0.16
84 5 0.03
85 7 0.04
86 50 0.29
87 72 0.42
88 9 0.05
ACGTcount: A:0.43, C:0.12, G:0.11, T:0.34
Consensus pattern (85 bp):
GCAGGAATAAATCCCAAAATAGATTTTATTTAATTTTAATTTCTATTTTTGGCAACAAAATCAAA
ATGTAATAAATTCTTGAAAC
Found at i:21965784 original size:88 final size:88
Alignment explanation
Indices: 21965439--21965812 Score: 281
Period size: 87 Copynumber: 4.3 Consensus size: 88
21965429 TAAAATGGCA
* * * **
21965439 GGAATAAATCCCAAAACAGATTTT-ATTTAA-TTTAATT-CT-A-ATTTGAAAACAAAAT-AAAA
1 GGAATAAATCCCGAAACAAATTTTAATTTAACTTTAATTACTCATTTTTGGCAACAAAATCAAAA
** * *
21965498 TCAAATAAATTC-TTGTTAA-ACGGG
66 TGTAATAAAATCATTG--AACA-GCG
* * * * * *
21965522 GGAATAAATCCCTAAATAGATTTTAA-TTAATTTTAATT-TTTATTTTTGGCAACAAAATCAAAA
1 GGAATAAATCCCGAAACAAATTTTAATTTAACTTTAATTACTCATTTTTGGCAACAAAATCAAAA
* * *
21965585 TGTAATAAATTCGTTGAACAGCA
66 TGTAATAAAATCATTGAACAGCG
* * * * * *
21965608 GGAACAAATCCCAAAATAGATTTT-ATTTAATTTTAATTTCTCATTTTTGGCAACAAAATCAAAA
1 GGAATAAATCCCGAAACAAATTTTAATTTAACTTTAATTACTCATTTTTGGCAACAAAATCAAAA
**
21965672 TGTAAT-AAATCCATTGAATGGCG
66 TGTAATAAAAT-CATTGAACAGCG
* * * *
21965695 GGAATAAATCCCGAAACAAATTTTAATTTAGCTTTAA-TACTCGA-TTTTGGAAATAAAATAAAA
1 GGAATAAATCCCGAAACAAATTTTAATTTAACTTTAATTACTC-ATTTTTGGCAACAAAATCAAA
* *
21965758 ATTGGAATAAAATCTTTGAACAGCG
65 A-TGTAATAAAATCATTGAACAGCG
* * *
21965783 GGAATCAATCCCGAAACGAATTTTATTTTA
1 GGAATAAATCCCGAAACAAATTTTAATTTA
21965813 CTCATTTTTG
Statistics
Matches: 241, Mismatches: 36, Indels: 23
0.80 0.12 0.08
Matches are distributed among these distances:
83 26 0.11
84 9 0.04
85 2 0.01
86 52 0.22
87 93 0.39
88 55 0.23
89 4 0.02
ACGTcount: A:0.43, C:0.12, G:0.11, T:0.34
Consensus pattern (88 bp):
GGAATAAATCCCGAAACAAATTTTAATTTAACTTTAATTACTCATTTTTGGCAACAAAATCAAAA
TGTAATAAAATCATTGAACAGCG
Found at i:21965822 original size:79 final size:79
Alignment explanation
Indices: 21965739--21965969 Score: 291
Period size: 79 Copynumber: 2.9 Consensus size: 79
21965729 TAATACTCGA
* * * *
21965739 TTTTGGAAATAAAATAAAAATTGGAATAAAATCTTTGAACAGCGGGAATCAATCCCGAAACGAAT
1 TTTTGGAAATAAAATAAAATTTGGAATAAAATCATTGAACGGCGGGAATCAATCCCGAAACGGAT
21965804 TTTATTTTACTCAT
66 TTTATTTTACTCAT
* * * * ***
21965818 TTTTGGCAATAAAACAAAATTTAGAATAAAATCGTTGAACGGCGGGAATCAATATTGAAACGGAT
1 TTTTGGAAATAAAATAAAATTTGGAATAAAATCATTGAACGGCGGGAATCAATCCCGAAACGGAT
**
21965883 TTTATTTTACTTTT
66 TTTATTTTACTCAT
* ** * *
21965897 TTTTCGAAAATAAAATAAAATTTGGAATAAAATCATTGAACGGTAGGAATCAATCCCAAAATGGA
1 TTTT-GGAAATAAAATAAAATTTGGAATAAAATCATTGAACGGCGGGAATCAATCCCGAAACGGA
21965962 TTTTATTT
65 TTTTATTT
21965970 ATCTTTAATT
Statistics
Matches: 127, Mismatches: 24, Indels: 1
0.84 0.16 0.01
Matches are distributed among these distances:
79 71 0.56
80 56 0.44
ACGTcount: A:0.41, C:0.11, G:0.15, T:0.33
Consensus pattern (79 bp):
TTTTGGAAATAAAATAAAATTTGGAATAAAATCATTGAACGGCGGGAATCAATCCCGAAACGGAT
TTTATTTTACTCAT
Found at i:21966011 original size:87 final size:87
Alignment explanation
Indices: 21965907--21966068 Score: 213
Period size: 88 Copynumber: 1.9 Consensus size: 87
21965897 TTTTCGAAAA
* * *
21965907 TAAAATAAAATTTGGAATAAAAT-CATTGAACGGTAG-GAATCAATCCCAAAATGGATTTTATTT
1 TAAAATAAAATATGGAATAAAATCCATTGAACGG-AGAGAATAAATCCCAAAATGAATTTTATTT
21965970 A-TCTTTAATTTCCTGTTTGGAAC
65 ACT-TTTAATTTCCTGTTTGGAAC
* * * *
21965993 TAAAATCAAAATATGGAATAAAATCCGTTGAACGGCGAGAATAAATCTCGAAATGAATTTTATTT
1 TAAAAT-AAAATATGGAATAAAATCCATTGAACGGAGAGAATAAATCCCAAAATGAATTTTATTT
21966058 ACTTTTAATTT
65 ACTTTTAATTT
21966069 GGGAACAAAA
Statistics
Matches: 65, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
86 6 0.09
87 17 0.26
88 41 0.63
89 1 0.02
ACGTcount: A:0.40, C:0.11, G:0.14, T:0.35
Consensus pattern (87 bp):
TAAAATAAAATATGGAATAAAATCCATTGAACGGAGAGAATAAATCCCAAAATGAATTTTATTTA
CTTTTAATTTCCTGTTTGGAAC
Found at i:21967969 original size:48 final size:47
Alignment explanation
Indices: 21967897--21968246 Score: 348
Period size: 48 Copynumber: 7.3 Consensus size: 47
21967887 CAACTAATGA
** * *
21967897 TGGGACATGGCATCGGCATTGATATTTGCGCTAGTGTAAGACTATGTC
1 TGGGACATGGCATCGGCA-TGATATGAGAGCTAGTGTAAGACCATGTC
* * *
21967945 TGGGACATGGCATCGGCCACGATATGAGAGCCAGTGTAAGA-CAGTGTT
1 TGGGACATGGCATCGG-CATGATATGAGAGCTAGTGTAAGACCA-TGTC
* * * * *
21967993 TGGAACATGGCATCAGCGATGTTGTGAGAGCCAGTGTAAGACCATGTC
1 TGGGACATGGCATCGGC-ATGATATGAGAGCTAGTGTAAGACCATGTC
*
21968041 TGGGACATGGCATCGGCATTGATATGTGCA-CTAGTGTAAGACCATGTC
1 TGGGACATGGCATCGGCA-TGATATGAG-AGCTAGTGTAAGACCATGTC
*
21968089 TGGGACATAGCATCGG--TCGCATTATGAGAGCTAGTGTAAGACCATGTC
1 TGGGACATGGCATCGGCAT-G-A-TATGAGAGCTAGTGTAAGACCATGTC
* * * * *
21968137 TGGGACATGGTATCGGCATTAAGACGAGAGCTAGTGTAAGACCATATC
1 TGGGACATGGCATCGGCA-TGATATGAGAGCTAGTGTAAGACCATGTC
* * * * *
21968185 TGGGACATGGCATCGGCCTCGACATGTGAGCCAGTGTAAGACCATGTT
1 TGGGACATGGCATCGGCAT-GATATGAGAGCTAGTGTAAGACCATGTC
*
21968233 TGGAACATGGCATC
1 TGGGACATGGCATC
21968247 AGCAATTCAC
Statistics
Matches: 251, Mismatches: 37, Indels: 28
0.79 0.12 0.09
Matches are distributed among these distances:
45 1 0.00
46 1 0.00
47 6 0.02
48 236 0.94
49 6 0.02
51 1 0.00
ACGTcount: A:0.26, C:0.19, G:0.30, T:0.25
Consensus pattern (47 bp):
TGGGACATGGCATCGGCATGATATGAGAGCTAGTGTAAGACCATGTC
Found at i:21968166 original size:144 final size:144
Alignment explanation
Indices: 21967897--21968246 Score: 431
Period size: 144 Copynumber: 2.4 Consensus size: 144
21967887 CAACTAATGA
* * *
21967897 TGGGACATGGCATCGGCATTGATATTTGCGCTAGTGTAAGACTATGTCTGGGACATGGCATCGGC
1 TGGGACATGGCATCGGCATTGATATGTGCACTAGTGTAAGACCATGTCTGGGACATGGCATCGGC
* * *
21967962 CACGATATGAGAGCCAGTGTAAGACAGTGTTTGGAACATGGCATCAGCGATGTTGTGAGAGCCAG
66 CACGATATGAGAGCCAGTGTAAGACAGTGTCTGGAACATGGCATCAGCGATGTAGCGAGAGCCAG
*
21968027 TGTAAGACCATGTC
131 TGTAAGACCATATC
* *
21968041 TGGGACATGGCATCGGCATTGATATGTGCACTAGTGTAAGACCATGTCTGGGACATAGCATCGGT
1 TGGGACATGGCATCGGCATTGATATGTGCACTAGTGTAAGACCATGTCTGGGACATGGCATCGGC
* * * * *
21968106 CGC-ATTATGAGAGCTAGTGTAAGACCA-TGTCTGGGACATGGTATCGGC-AT-TAAGACGAGAG
66 CACGA-TATGAGAGCCAGTGTAAGA-CAGTGTCTGGAACATGGCATCAGCGATGT-AG-CGAGAG
*
21968167 CTAGTGTAAGACCATATC
127 CCAGTGTAAGACCATATC
* * * * * *
21968185 TGGGACATGGCATCGGCCTCGACATGTG-AGCCAGTGTAAGACCATGTTTGGAACATGGCATC
1 TGGGACATGGCATCGGCATTGATATGTGCA-CTAGTGTAAGACCATGTCTGGGACATGGCATC
21968247 AGCAATTCAC
Statistics
Matches: 179, Mismatches: 22, Indels: 10
0.85 0.10 0.05
Matches are distributed among these distances:
142 1 0.01
143 5 0.03
144 171 0.96
145 2 0.01
ACGTcount: A:0.26, C:0.19, G:0.30, T:0.25
Consensus pattern (144 bp):
TGGGACATGGCATCGGCATTGATATGTGCACTAGTGTAAGACCATGTCTGGGACATGGCATCGGC
CACGATATGAGAGCCAGTGTAAGACAGTGTCTGGAACATGGCATCAGCGATGTAGCGAGAGCCAG
TGTAAGACCATATC
Found at i:21974631 original size:18 final size:18
Alignment explanation
Indices: 21974608--21974644 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
21974598 ATATTAAATG
21974608 AGATGTAAGTTTATATGT
1 AGATGTAAGTTTATATGT
21974626 AGATGTAAGTTTATATGT
1 AGATGTAAGTTTATATGT
21974644 A
1 A
21974645 AGTAATACAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.35, C:0.00, G:0.22, T:0.43
Consensus pattern (18 bp):
AGATGTAAGTTTATATGT
Found at i:21982355 original size:40 final size:40
Alignment explanation
Indices: 21982296--21982509 Score: 351
Period size: 40 Copynumber: 5.4 Consensus size: 40
21982286 TGATAACCGA
21982296 GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGG
1 GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGG
*
21982336 GCTGAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGG
1 GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGG
*
21982376 GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCTGG
1 GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGG
*
21982416 GCTAAGTCCCGAAGGCATTTGTACGAGTTACTATATCCGG
1 GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGG
* *
21982456 GCTAAGTCCCGAAGGCAGTTGAGCGAG-TAGCTATATCC-G
1 GCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCCGG
*
21982495 GCTAAATCCCGAAGG
1 GCTAAGTCCCGAAGG
21982510 TACTTGGTTT
Statistics
Matches: 164, Mismatches: 9, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
39 17 0.10
40 147 0.90
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGG
Found at i:21987511 original size:51 final size:51
Alignment explanation
Indices: 21987435--21987534 Score: 200
Period size: 51 Copynumber: 2.0 Consensus size: 51
21987425 CAGAAAAGGA
21987435 AAGAATTTCTAAAATTGAAGAAAGGCCGAATGACTGTAACAGAGTATGAGC
1 AAGAATTTCTAAAATTGAAGAAAGGCCGAATGACTGTAACAGAGTATGAGC
21987486 AAGAATTTCTAAAATTGAAGAAAGGCCGAATGACTGTAACAGAGTATGA
1 AAGAATTTCTAAAATTGAAGAAAGGCCGAATGACTGTAACAGAGTATGA
21987535 ACGTGAGTTC
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
51 49 1.00
ACGTcount: A:0.44, C:0.11, G:0.23, T:0.22
Consensus pattern (51 bp):
AAGAATTTCTAAAATTGAAGAAAGGCCGAATGACTGTAACAGAGTATGAGC
Found at i:21992185 original size:48 final size:49
Alignment explanation
Indices: 21992114--21992318 Score: 202
Period size: 48 Copynumber: 4.3 Consensus size: 49
21992104 TAACTAATGA
** * * *
21992114 TGGGACATGGCATC-AACATTGATATGTGCGCTAGTGTAAGACCATGTC
1 TGGGACATGGCATCGGCCATTGATATGAGAGCCAGTGTAAGACCATGTC
*
21992162 TGGGACATGGCATCGGCCA-TGATATGAGAGCCAGTGTAAGACCATGTT
1 TGGGACATGGCATCGGCCATTGATATGAGAGCCAGTGTAAGACCATGTC
* * * * * * * *
21992210 TGGAACATGACATCAGCGA-TGTTGTGAGAGCCAGTATAGGACCATGTC
1 TGGGACATGGCATCGGCCATTGATATGAGAGCCAGTGTAAGACCATGTC
* * * * * *
21992258 TGGGACGTGGCATCGG-CATTGATATGTGCGCTAGTGTAAGACCATATT
1 TGGGACATGGCATCGGCCATTGATATGAGAGCCAGTGTAAGACCATGTC
21992306 TGGGACATGGCAT
1 TGGGACATGGCAT
21992319 TAGCCATATG
Statistics
Matches: 125, Mismatches: 30, Indels: 4
0.79 0.19 0.03
Matches are distributed among these distances:
47 1 0.01
48 122 0.98
49 2 0.02
ACGTcount: A:0.26, C:0.18, G:0.30, T:0.25
Consensus pattern (49 bp):
TGGGACATGGCATCGGCCATTGATATGAGAGCCAGTGTAAGACCATGTC
Found at i:21992375 original size:62 final size:62
Alignment explanation
Indices: 21992265--21992386 Score: 181
Period size: 62 Copynumber: 2.0 Consensus size: 62
21992255 GTCTGGGACG
* * * * * *
21992265 TGGCATCGGCATTGATATGTGCGCTAGTGTAAGACCATATTTGGGACATGGCATTAGCCATA
1 TGGCATCGGCATTGATATGTGCACTACTGTAAGACCATATCTGAGACATAGCATCAGCCATA
*
21992327 TGGCATCGGCATTGATATGTGCACTACTGTAAGACCATGTCTGAGACATAGCATCAGCCA
1 TGGCATCGGCATTGATATGTGCACTACTGTAAGACCATATCTGAGACATAGCATCAGCCA
21992387 CATTATGAGA
Statistics
Matches: 53, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
62 53 1.00
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.27
Consensus pattern (62 bp):
TGGCATCGGCATTGATATGTGCACTACTGTAAGACCATATCTGAGACATAGCATCAGCCATA
Found at i:21992445 original size:48 final size:48
Alignment explanation
Indices: 21992393--21992526 Score: 142
Period size: 48 Copynumber: 2.8 Consensus size: 48
21992383 GCCACATTAT
* * * *
21992393 GAGAGCCAGTATAAGATCATGTTTGGGACATGGCATCGGCATTAAGAC
1 GAGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCATCAACAC
* * * * * * *
21992441 GAGAGCTAGTGTAAGACCATGTCTAGGACATGGCCTCGGCCTCGACAT
1 GAGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCATCAACAC
* * *
21992489 GTGAGCCAGTGTAAGACCATGTTTGGAACATGACATCG
1 GAGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCG
21992527 ACAATTCACC
Statistics
Matches: 68, Mismatches: 18, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
48 68 1.00
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.22
Consensus pattern (48 bp):
GAGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCATCAACAC
Found at i:21992502 original size:206 final size:206
Alignment explanation
Indices: 21992120--21992520 Score: 502
Period size: 206 Copynumber: 1.9 Consensus size: 206
21992110 ATGATGGGAC
* * * * * *
21992120 ATGGCATCAACATTGATATGTGCGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCATGAT
1 ATGGCATCAACATTGATATGTGCACTACTGTAAGACCATGTCTGAGACATAGCATCAGCCATCAT
* * * *
21992185 ATGAGAGCCAGTGTAAGACCATGTTTGGAACATGACATCAGCGATGTTGTGAGAGCCAGTATAGG
66 ATGAGAGCCAGTATAAGACCATGTTTGGAACATGACATCAGCGATGTAGCGAGAGCCAGTATAAG
* * * * * * *
21992250 ACCATGTCTGGGACGTGGCATCGGCATTGATATGTGCGCTAGTGTAAGACCATATTTGGGACATG
131 ACCATGTCTAGGACATGGCATCGGCATCGACATGTGAGCCAGTGTAAGACCATATTTGGAACATG
21992315 GCATTAGCCAT
196 GCATTAGCCAT
**
21992326 ATGGCATCGGCATTGATATGTGCACTACTGTAAGACCATGTCTGAGACATAGCATCAGCCA-CAT
1 ATGGCATCAACATTGATATGTGCACTACTGTAAGACCATGTCTGAGACATAGCATCAGCCATCA-
* * * * * *
21992390 TATGAGAGCCAGTATAAGATCATGTTTGGGACATGGCATCGGC-AT-TAAGACGAGAGCTAGTGT
65 TATGAGAGCCAGTATAAGACCATGTTTGGAACATGACATCAGCGATGT-AG-CGAGAGCCAGTAT
* * *
21992453 AAGACCATGTCTAGGACATGGCCTCGGCCTCGACATGTGAGCCAGTGTAAGACCATGTTTGGAAC
128 AAGACCATGTCTAGGACATGGCATCGGCATCGACATGTGAGCCAGTGTAAGACCATATTTGGAAC
21992518 ATG
193 ATG
21992521 ACATCGACAA
Statistics
Matches: 164, Mismatches: 28, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
204 1 0.01
205 4 0.02
206 159 0.97
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.25
Consensus pattern (206 bp):
ATGGCATCAACATTGATATGTGCACTACTGTAAGACCATGTCTGAGACATAGCATCAGCCATCAT
ATGAGAGCCAGTATAAGACCATGTTTGGAACATGACATCAGCGATGTAGCGAGAGCCAGTATAAG
ACCATGTCTAGGACATGGCATCGGCATCGACATGTGAGCCAGTGTAAGACCATATTTGGAACATG
GCATTAGCCAT
Found at i:22006449 original size:59 final size:60
Alignment explanation
Indices: 22006346--22006471 Score: 145
Period size: 59 Copynumber: 2.1 Consensus size: 60
22006336 TAATAATGTG
22006346 TTTTTCTAATCATCTAATTATAAAAAATTACAAAATAGTCACCTAATTATTGATAAA-TT-TC
1 TTTTT-TAATCATCTAATTATAAAAAATTACAAAATAGTCACCTAATTATT--TAAATTTGTC
* * *
22006407 TTTTTTAATCA-CTCAATTAT-GAAAATTACAAAAT-GATTACCTATTTATTTAAATTTGTC
1 TTTTTTAATCATCT-AATTATAAAAAATTACAAAATAG-TCACCTAATTATTTAAATTTGTC
22006466 TTTTTT
1 TTTTTT
22006472 TGTCACCGAC
Statistics
Matches: 58, Mismatches: 3, Indels: 10
0.82 0.04 0.14
Matches are distributed among these distances:
57 4 0.07
58 3 0.05
59 34 0.59
60 12 0.21
61 5 0.09
ACGTcount: A:0.38, C:0.12, G:0.04, T:0.46
Consensus pattern (60 bp):
TTTTTTAATCATCTAATTATAAAAAATTACAAAATAGTCACCTAATTATTTAAATTTGTC
Found at i:22010973 original size:6 final size:6
Alignment explanation
Indices: 22010953--22010982 Score: 53
Period size: 6 Copynumber: 5.2 Consensus size: 6
22010943 AAATTATAAT
22010953 TATTTA TATTTA TATTTA TATTTA -ATTTA T
1 TATTTA TATTTA TATTTA TATTTA TATTTA T
22010983 CAAATATGAA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
5 5 0.22
6 18 0.78
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (6 bp):
TATTTA
Found at i:22013960 original size:18 final size:18
Alignment explanation
Indices: 22013937--22013971 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
22013927 CTTTACTACC
22013937 TCAAAAATTATAATGTCT
1 TCAAAAATTATAATGTCT
22013955 TCAAAAATTATAATGTC
1 TCAAAAATTATAATGTC
22013972 CTCTATTTGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.46, C:0.11, G:0.06, T:0.37
Consensus pattern (18 bp):
TCAAAAATTATAATGTCT
Found at i:22016900 original size:158 final size:158
Alignment explanation
Indices: 22016630--22016939 Score: 433
Period size: 158 Copynumber: 2.0 Consensus size: 158
22016620 AGATGTTGAG
* *
22016630 GATGTAGCTACAGCAAATAATCTTGAAAAAGGAAACAATTACCTTGGATGCAAAGATGATGTTTC
1 GATGTAGCTACAGCAAATAATCTTGAAAAAAGAAACAATTACCGTGGATGCAAAGATGATGTTTC
* *
22016695 CTTGGATGAGATGGATGTTTCAAATACACAATCGCAACCGCCGAAGCCAAACCAAGATGGTTCCA
66 CTTGGATGAGATGGATGTCTCAAATACACAATCACAACCGCCGAAGCCAAACCAAGATGGTTCCA
* *
22016760 TATTTTCAAAGAAGAAAAAAAAATTGTT
131 CATCTTCAAAGAAGAAAAAAAAATTGTT
** * ** *
22016788 GATGTAGCTATTGCAAATAATCTT-AAAGAAAGAAACCATTACCGTGGATGTGAATATGATGTTT
1 GATGTAGCTACAGCAAATAATCTTGAAA-AAAGAAACAATTACCGTGGATGCAAAGATGATGTTT
** * * *
22016852 CCTTGGATGAGATGGATGTCTCATTTACACAATCACAACTGTCGAAGCCAAACCAAGATGGTTTC
65 CCTTGGATGAGATGGATGTCTCAAATACACAATCACAACCGCCGAAGCCAAACCAAGATGGTTCC
* *
22016917 ACATCTTCAGATAAGAAAAAAAA
130 ACATCTTCAAAGAAGAAAAAAAA
22016940 TGGATGATGG
Statistics
Matches: 132, Mismatches: 19, Indels: 2
0.86 0.12 0.01
Matches are distributed among these distances:
157 3 0.02
158 129 0.98
ACGTcount: A:0.39, C:0.16, G:0.19, T:0.26
Consensus pattern (158 bp):
GATGTAGCTACAGCAAATAATCTTGAAAAAAGAAACAATTACCGTGGATGCAAAGATGATGTTTC
CTTGGATGAGATGGATGTCTCAAATACACAATCACAACCGCCGAAGCCAAACCAAGATGGTTCCA
CATCTTCAAAGAAGAAAAAAAAATTGTT
Found at i:22020455 original size:16 final size:16
Alignment explanation
Indices: 22020416--22020447 Score: 55
Period size: 16 Copynumber: 1.9 Consensus size: 16
22020406 GAACGTGAAA
22020416 AAAATAGAAAATAAAAT
1 AAAATA-AAAATAAAAT
22020433 AAAATAAAAATAAAA
1 AAAATAAAAATAAAA
22020448 ACATATAATA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.81, C:0.00, G:0.03, T:0.16
Consensus pattern (16 bp):
AAAATAAAAATAAAAT
Found at i:22020477 original size:25 final size:24
Alignment explanation
Indices: 22020415--22020471 Score: 71
Period size: 25 Copynumber: 2.4 Consensus size: 24
22020405 AGAACGTGAA
* *
22020415 AAAAATAGAAA-ATAAAATAAAAT
1 AAAAATAAAAACATATAATAAAAT
22020438 AAAAATAAAAACATATAATAATAAT
1 AAAAATAAAAACATATAATAA-AAT
*
22020463 AATAATAAA
1 AAAAATAAA
22020472 TCCATAACAA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
23 10 0.34
24 8 0.28
25 11 0.38
ACGTcount: A:0.75, C:0.02, G:0.02, T:0.21
Consensus pattern (24 bp):
AAAAATAAAAACATATAATAAAAT
Found at i:22021111 original size:43 final size:43
Alignment explanation
Indices: 22020991--22021149 Score: 137
Period size: 43 Copynumber: 3.7 Consensus size: 43
22020981 GCTCGTTACA
* ** *
22020991 ATGCCAACGTCCCAGACATGGTCTTACATGT-AATCAAATATCT
1 ATGCCAACGTCCCAGACGTGGTCTTACACATAAATCAAATA-CG
* ** * *
22021034 ATACCATTGTCCTAGACAG-GGTCTTACAC-GAAATCAAATACG
1 ATGCCAACGTCCCAGAC-GTGGTCTTACACATAAATCAAATACG
* *
22021076 ATGCCAATGTCCCAGGCGTGGTCTTACACATAAATCATAAGT-CG
1 ATGCCAACGTCCCAGACGTGGTCTTACACATAAATCA-AA-TACG
* *
22021120 ATGCCAACATCGCAGACGTGGTCTTACACA
1 ATGCCAACGTCCCAGACGTGGTCTTACACA
22021150 AAAACACATA
Statistics
Matches: 93, Mismatches: 17, Indels: 11
0.77 0.14 0.09
Matches are distributed among these distances:
41 1 0.01
42 24 0.26
43 37 0.40
44 30 0.32
45 1 0.01
ACGTcount: A:0.32, C:0.26, G:0.18, T:0.25
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACGTGGTCTTACACATAAATCAAATACG
Found at i:22021705 original size:28 final size:28
Alignment explanation
Indices: 22021647--22021698 Score: 72
Period size: 28 Copynumber: 1.9 Consensus size: 28
22021637 TGTTTCATTT
* *
22021647 ATTTCACATTTTAGTCCCTCAATTACAA
1 ATTTCACAATTTAGTCCCTAAATTACAA
22021675 ATTTCACAATTTAGT-CC-AAATTAC
1 ATTTCACAATTTAGTCCCTAAATTAC
22021699 TCAAATTCAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 6 0.27
27 2 0.09
28 14 0.64
ACGTcount: A:0.35, C:0.23, G:0.04, T:0.38
Consensus pattern (28 bp):
ATTTCACAATTTAGTCCCTAAATTACAA
Found at i:22024345 original size:58 final size:58
Alignment explanation
Indices: 22024300--22024443 Score: 168
Period size: 58 Copynumber: 2.4 Consensus size: 58
22024290 TAGTTCATAT
*
22024300 TTTAATAATAATTATATTAAGAA-TATCATTAAATTATATATTGTTTTATTAAATTGTA
1 TTTAATAATAATTATATTAA-AATTATCATTAAATTATATATTGTTTTATTAAATTATA
* * *
22024358 TTTAATAATAATTATGTTAAAATTATGATTAAATTATTTATTATT-TTTTATTCAATTATA
1 TTTAATAATAATTATATTAAAATTATCATTAAATTA--TA-TATTGTTTTATTAAATTATA
*
22024418 TTTAATATTAATCT-TATTATAAATTA
1 TTTAATAATAAT-TATATTA-AAATTA
22024444 ATAACAAAAA
Statistics
Matches: 74, Mismatches: 6, Indels: 9
0.83 0.07 0.10
Matches are distributed among these distances:
57 2 0.03
58 31 0.42
60 30 0.41
61 11 0.15
ACGTcount: A:0.42, C:0.02, G:0.03, T:0.53
Consensus pattern (58 bp):
TTTAATAATAATTATATTAAAATTATCATTAAATTATATATTGTTTTATTAAATTATA
Found at i:22025871 original size:22 final size:21
Alignment explanation
Indices: 22025843--22025888 Score: 65
Period size: 22 Copynumber: 2.1 Consensus size: 21
22025833 CACTAACCAA
*
22025843 ATTTTATTACATATTTTGTTTT
1 ATTTTATTACATACTTT-TTTT
*
22025865 ATTTTATTACTTACTTTTTTT
1 ATTTTATTACATACTTTTTTT
22025886 ATT
1 ATT
22025889 ATAAATGTTA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 7 0.32
22 15 0.68
ACGTcount: A:0.22, C:0.07, G:0.02, T:0.70
Consensus pattern (21 bp):
ATTTTATTACATACTTTTTTT
Found at i:22027156 original size:24 final size:24
Alignment explanation
Indices: 22027129--22027207 Score: 72
Period size: 24 Copynumber: 3.2 Consensus size: 24
22027119 TATCATCAAT
22027129 TTCATTAATAACAATCAGGACAAG
1 TTCATTAATAACAATCAGGACAAG
* * *
22027153 TTCACTAATGCATACATGATCA--TCAAT
1 TTCATTAAT--A-ACA--ATCAGGACAAG
22027180 TTCATTAATAACAATCAGGACAAG
1 TTCATTAATAACAATCAGGACAAG
22027204 TTCA
1 TTCA
22027208 CTAGGCCACC
Statistics
Matches: 42, Mismatches: 6, Indels: 14
0.68 0.10 0.23
Matches are distributed among these distances:
22 4 0.10
24 18 0.43
25 1 0.02
26 1 0.02
27 14 0.33
29 4 0.10
ACGTcount: A:0.42, C:0.19, G:0.10, T:0.29
Consensus pattern (24 bp):
TTCATTAATAACAATCAGGACAAG
Found at i:22027165 original size:51 final size:51
Alignment explanation
Indices: 22027105--22027210 Score: 194
Period size: 51 Copynumber: 2.1 Consensus size: 51
22027095 TATTTCTTTT
*
22027105 ACTAATGCATAAATTATCATCAATTTCATTAATAACAATCAGGACAAGTTC
1 ACTAATGCATAAATGATCATCAATTTCATTAATAACAATCAGGACAAGTTC
*
22027156 ACTAATGCATACATGATCATCAATTTCATTAATAACAATCAGGACAAGTTC
1 ACTAATGCATAAATGATCATCAATTTCATTAATAACAATCAGGACAAGTTC
22027207 ACTA
1 ACTA
22027211 GGCCACCTAC
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
51 53 1.00
ACGTcount: A:0.42, C:0.19, G:0.08, T:0.30
Consensus pattern (51 bp):
ACTAATGCATAAATGATCATCAATTTCATTAATAACAATCAGGACAAGTTC
Found at i:22028015 original size:27 final size:27
Alignment explanation
Indices: 22027985--22028037 Score: 97
Period size: 27 Copynumber: 2.0 Consensus size: 27
22027975 GTTAATCAAG
*
22027985 TTATTCAGATCAACTCGAATAAAAAAA
1 TTATTCAAATCAACTCGAATAAAAAAA
22028012 TTATTCAAATCAACTCGAATAAAAAA
1 TTATTCAAATCAACTCGAATAAAAAA
22028038 TTAAGTTTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.53, C:0.15, G:0.06, T:0.26
Consensus pattern (27 bp):
TTATTCAAATCAACTCGAATAAAAAAA
Found at i:22028758 original size:20 final size:20
Alignment explanation
Indices: 22028713--22028760 Score: 53
Period size: 20 Copynumber: 2.4 Consensus size: 20
22028703 CTGGAGCTAT
* *
22028713 TCTAACTTGTTTAAAAACAA
1 TCTAACTTATTGAAAAACAA
*
22028733 TTTAACTTATTGACAAAA-AA
1 TCTAACTTATTGA-AAAACAA
22028753 TCTAACTT
1 TCTAACTT
22028761 TGATCGAGAT
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
20 19 0.83
21 4 0.17
ACGTcount: A:0.44, C:0.15, G:0.04, T:0.38
Consensus pattern (20 bp):
TCTAACTTATTGAAAAACAA
Found at i:22028912 original size:22 final size:25
Alignment explanation
Indices: 22028887--22028934 Score: 75
Period size: 22 Copynumber: 2.0 Consensus size: 25
22028877 TTTGTTCAAC
22028887 TTTAATTT-TTAT-TCAAAA-ATAT
1 TTTAATTTGTTATATCAAAACATAT
22028909 TTTAATTTGTTATATCAAAACATAT
1 TTTAATTTGTTATATCAAAACATAT
22028934 T
1 T
22028935 ATCAAATAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
22 8 0.35
23 4 0.17
24 6 0.26
25 5 0.22
ACGTcount: A:0.40, C:0.06, G:0.02, T:0.52
Consensus pattern (25 bp):
TTTAATTTGTTATATCAAAACATAT
Found at i:22030608 original size:131 final size:131
Alignment explanation
Indices: 22030438--22030828 Score: 498
Period size: 131 Copynumber: 3.0 Consensus size: 131
22030428 AATTTGGAGA
* * ** * * * * *
22030438 ACATGAATGAAATTCTAAAGGAATATTCGATTATCTTGAATAAACAAGAGATCGCAACCCAGCAC
1 ACATGAGTGAAATTCTAAAGGGACCTTCGATTATTTTGAACAAACGAGAAATTGCAACCCAGCAC
* * * * * * * *
22030503 GATAGGGCACGATTCC-CAAATTGTCAAACATCGAATATTACCTTCATTTTGAAGAGTTTTTAGA
66 GATAGGGCACGATTCCGCGAATTGCCAAATATCGAACATCACCTTC-GTTTAAAGAATTTTTA-A
22030567 AA-
129 AAG
* * *
22030569 ACGTGAGTGAAATTCAAAAGGGACCTTCGATTATTTTGAACAAACGAGAAATTGCAACCTAGCAC
1 ACATGAGTGAAATTCTAAAGGGACCTTCGATTATTTTGAACAAACGAGAAATTGCAACCCAGCAC
*
22030634 GATAGGGCACGATTCCGCGAATTGCCAAATATCGAACATCGCCTTCGTTTAAAGAATTTTTAAAA
66 GATAGGGCACGATTCCGCGAATTGCCAAATATCGAACATCACCTTCGTTTAAAGAATTTTTAAAA
22030699 G
131 G
* * * * *
22030700 ACATGGGTGAAATTTTAAAGGGACCTTTGATTATTTTGAACAAACGAGAAATTGTAACCCAACAC
1 ACATGAGTGAAATTCTAAAGGGACCTTCGATTATTTTGAACAAACGAGAAATTGCAACCCAGCAC
* *
22030765 GATAGGGCACGATTCCGCGAATTGCCAAATATCGAACATCGCCTTCGCTTAAAGAATTTTTAAA
66 GATAGGGCACGATTCCGCGAATTGCCAAATATCGAACATCACCTTCGTTTAAAGAATTTTTAAA
22030829 TGAATTATTA
Statistics
Matches: 228, Mismatches: 30, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
130 3 0.01
131 202 0.89
132 23 0.10
ACGTcount: A:0.37, C:0.18, G:0.18, T:0.27
Consensus pattern (131 bp):
ACATGAGTGAAATTCTAAAGGGACCTTCGATTATTTTGAACAAACGAGAAATTGCAACCCAGCAC
GATAGGGCACGATTCCGCGAATTGCCAAATATCGAACATCACCTTCGTTTAAAGAATTTTTAAAA
G
Found at i:22031642 original size:2 final size:2
Alignment explanation
Indices: 22031635--22031669 Score: 63
Period size: 2 Copynumber: 18.0 Consensus size: 2
22031625 AGAACATGCT
22031635 TA TA TA TA TA TA TA TA TA TA TA -A TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
22031670 AAGAAGACTA
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 31 0.97
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:22033976 original size:133 final size:133
Alignment explanation
Indices: 22033738--22034265 Score: 765
Period size: 133 Copynumber: 4.0 Consensus size: 133
22033728 ACGAGATATG
* *
22033738 CAATCTTCAGCCTACTCCACTACAACTTTAGGGAGATAGGATGGTGGCTTAAAGCTGCTTCACTG
1 CAATCTTCAGCCTACTCCACTACAACTTTAGGGAGCTAGGATGGTGGCTTAAATCTGCTTCACTG
* * * *
22033803 CAACTTCAGGAAGACAAGATTCGCCTTTTTCGATCTGCTCCACTGCAACTTCAGGGAAACAATAT
66 CAACTTCAGGAAGACTAGATTCGCCGTCTTCGATCTGCTCCACTGCAACTTCAGGGAAACAAGAT
22033868 CTA
131 CTA
* * ** *
22033871 CAATCTTTAGCCTACTCTACTACAACTTTAGGGAGCTAGGATGGCAGCTTAAATCTACTTCACTG
1 CAATCTTCAGCCTACTCCACTACAACTTTAGGGAGCTAGGATGGTGGCTTAAATCTGCTTCACTG
* * * *
22033936 CAACTTTAGGAAGACTAGATTCACCGTCTTCGATTTGCTCCACTGCAACTTTAGGGAAAC---AT
66 CAACTTCAGGAAGACTAGATTCGCCGTCTTCGATCTGCTCCACTGCAACTTCAGGGAAACAAGAT
22033998 CTA
131 CTA
* * *
22034001 TAATCTTCCGCCTACTCCACTACAACTTTAGGGAGCTAGGATGGTGGCTTAAATCTGTTTCACTG
1 CAATCTTCAGCCTACTCCACTACAACTTTAGGGAGCTAGGATGGTGGCTTAAATCTGCTTCACTG
* * * * ** *
22034066 CAACTTTAAGAAAACTAGATTCGTCGTCTTCGATCTGCTCTGCTGCAACTTTAGGGAAACAAGAT
66 CAACTTCAGGAAGACTAGATTCGCCGTCTTCGATCTGCTCCACTGCAACTTCAGGGAAACAAGAT
22034131 CTA
131 CTA
* *
22034134 CAATCTTTAGCCTACTACACTACAACTTTAGGGAGCTAGGATGGTGGCTTAAATCTGCTTCACTG
1 CAATCTTCAGCCTACTCCACTACAACTTTAGGGAGCTAGGATGGTGGCTTAAATCTGCTTCACTG
* * *
22034199 CAACTTCAGGAAGACTAGATTCGCTGTCTTCGATCTGCTCCGCTGCAACTTCAGGGAGACAAGAT
66 CAACTTCAGGAAGACTAGATTCGCCGTCTTCGATCTGCTCCACTGCAACTTCAGGGAAACAAGAT
22034264 CT
131 CT
22034266 GTAGAATCAG
Statistics
Matches: 350, Mismatches: 42, Indels: 6
0.88 0.11 0.02
Matches are distributed among these distances:
130 115 0.33
133 235 0.67
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (133 bp):
CAATCTTCAGCCTACTCCACTACAACTTTAGGGAGCTAGGATGGTGGCTTAAATCTGCTTCACTG
CAACTTCAGGAAGACTAGATTCGCCGTCTTCGATCTGCTCCACTGCAACTTCAGGGAAACAAGAT
CTA
Found at i:22034212 original size:263 final size:263
Alignment explanation
Indices: 22033739--22034255 Score: 802
Period size: 263 Copynumber: 2.0 Consensus size: 263
22033729 CGAGATATGC
22033739 AATCTTCAGCCTACTCCACTACAACTTTAGGGAGATAGGATGGTGGCTTAAAGCTGCTTCACTGC
1 AATCTTCAGCCTACTCCACTACAACTTTAGGGAGATAGGATGGTGGCTTAAAGCTGCTTCACTGC
* * * * *
22033804 AACTTCAGGAAGACAAGATTCGCCTTTTTCGATCTGCTCCACTGCAACTTCAGGGAAACAATATC
66 AACTTCAAGAAAACAAGATTCGCCGTCTTCGATCTGCTCCACTGCAACTTCAGGGAAACAAGATC
22033869 TACAATCTTTAGCCTACTCTACTACAACTTTAGGGAGCTAGGATGGCAGCTTAAATCTACTTCAC
131 TACAATCTTTAGCCTACTCTACTACAACTTTAGGGAGCTAGGATGGCAGCTTAAATCTACTTCAC
* * *
22033934 TGCAACTTTAGGAAGACTAGATTCACCGTCTTCGATTTGCTCCACTGCAACTTTAGGGAAACATC
196 TGCAACTTCAGGAAGACTAGATTCACCGTCTTCGATCTGCTCCACTGCAACTTCAGGGAAACATC
22033999 TAT
261 TAT
* * * *
22034002 AATCTTCCGCCTACTCCACTACAACTTTAGGGAGCTAGGATGGTGGCTTAAATCTGTTTCACTGC
1 AATCTTCAGCCTACTCCACTACAACTTTAGGGAGATAGGATGGTGGCTTAAAGCTGCTTCACTGC
* * * ** *
22034067 AACTTTAAGAAAACTAGATTCGTCGTCTTCGATCTGCTCTGCTGCAACTTTAGGGAAACAAGATC
66 AACTTCAAGAAAACAAGATTCGCCGTCTTCGATCTGCTCCACTGCAACTTCAGGGAAACAAGATC
** *
22034132 TACAATCTTTAGCCTACTAC-ACTACAACTTTAGGGAGCTAGGATGGTGGCTTAAATCTGCTTCA
131 TACAATCTTTAGCCTACT-CTACTACAACTTTAGGGAGCTAGGATGGCAGCTTAAATCTACTTCA
* * *
22034196 CTGCAACTTCAGGAAGACTAGATTCGCTGTCTTCGATCTGCTCCGCTGCAACTTCAGGGA
195 CTGCAACTTCAGGAAGACTAGATTCACCGTCTTCGATCTGCTCCACTGCAACTTCAGGGA
22034256 GACAAGATCT
Statistics
Matches: 229, Mismatches: 24, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
263 228 1.00
264 1 0.00
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (263 bp):
AATCTTCAGCCTACTCCACTACAACTTTAGGGAGATAGGATGGTGGCTTAAAGCTGCTTCACTGC
AACTTCAAGAAAACAAGATTCGCCGTCTTCGATCTGCTCCACTGCAACTTCAGGGAAACAAGATC
TACAATCTTTAGCCTACTCTACTACAACTTTAGGGAGCTAGGATGGCAGCTTAAATCTACTTCAC
TGCAACTTCAGGAAGACTAGATTCACCGTCTTCGATCTGCTCCACTGCAACTTCAGGGAAACATC
TAT
Found at i:22040361 original size:4 final size:4
Alignment explanation
Indices: 22040347--22040381 Score: 52
Period size: 4 Copynumber: 8.2 Consensus size: 4
22040337 TACAACAATA
22040347 AAAT AAAAT AAAT AAAAT AAAT AAAT AAAT AAAT A
1 AAAT -AAAT AAAT -AAAT AAAT AAAT AAAT AAAT A
22040382 GCCTATCAAT
Statistics
Matches: 29, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
4 21 0.72
5 8 0.28
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (4 bp):
AAAT
Found at i:22040381 original size:8 final size:9
Alignment explanation
Indices: 22040347--22040379 Score: 59
Period size: 9 Copynumber: 3.8 Consensus size: 9
22040337 TACAACAATA
22040347 AAATAAAAT
1 AAATAAAAT
22040356 AAATAAAAT
1 AAATAAAAT
22040365 AAAT-AAAT
1 AAATAAAAT
22040373 AAATAAA
1 AAATAAA
22040380 TAGCCTATCA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
8 8 0.35
9 15 0.65
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (9 bp):
AAATAAAAT
Found at i:22065323 original size:131 final size:132
Alignment explanation
Indices: 22064963--22065326 Score: 468
Period size: 131 Copynumber: 2.8 Consensus size: 132
22064953 AGAACAGGAA
* ** * * * *
22064963 TGAAATTCTAAAGGAATATTCGATTATCTTGAACAAAC-AGGAGATCGCAACCCAGCACAATAGG
1 TGAAATTCTAAAGGGACCTTCGATTATTTTGAACAAACGA-GAAATTGCAACCCAGCACGATAGG
* * * *** * * * *
22065027 GCACGATTCC-CAAATTGCCAAACATCGAATATTAACTTCATTTTGAAGAGTTTTTAGAAAATGT
65 GCACGATTCCGCGAATTGCCAAATATCGAACATCGCCTTCAGTTTAAAGAATTTTTAAAAAATGT
22065091 GAG
130 GAG
* * *
22065094 TGAAATTCAAAAGGGACCTTCGATTATTTTAAACAAACGAGAAATTGCAACCTAGCACGATAGGG
1 TGAAATTCTAAAGGGACCTTCGATTATTTTGAACAAACGAGAAATTGCAACCCAGCACGATAGGG
22065159 CACGATTCCGCGAATTGCCAAATATCGAACATCGCCTTC-GTTTAAAGAATTTTTAAAAGACATG
66 CACGATTCCGCGAATTGCCAAATATCGAACATCGCCTTCAGTTTAAAGAATTTTTAAAA-A-ATG
22065223 -G-G
129 TGAG
* *
22065225 TGAAATTTTAAAGGGACCTTCGATTATTTTGAACAAACGAGAAATTGTAACCCAGCACGATAGGG
1 TGAAATTCTAAAGGGACCTTCGATTATTTTGAACAAACGAGAAATTGCAACCCAGCACGATAGGG
22065290 CACGATTCCGCGAATTGCCAAATATCGAACATCGCCT
66 CACGATTCCGCGAATTGCCAAATATCGAACATCGCCT
22065327 AATTCGACTT
Statistics
Matches: 204, Mismatches: 25, Indels: 8
0.86 0.11 0.03
Matches are distributed among these distances:
131 175 0.86
132 26 0.13
133 3 0.01
ACGTcount: A:0.37, C:0.19, G:0.19, T:0.26
Consensus pattern (132 bp):
TGAAATTCTAAAGGGACCTTCGATTATTTTGAACAAACGAGAAATTGCAACCCAGCACGATAGGG
CACGATTCCGCGAATTGCCAAATATCGAACATCGCCTTCAGTTTAAAGAATTTTTAAAAAATGTG
AG
Found at i:22066345 original size:2 final size:2
Alignment explanation
Indices: 22066338--22066365 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
22066328 TATTATAAAG
22066338 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
22066366 AAAGAACATT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:22066465 original size:2 final size:2
Alignment explanation
Indices: 22066408--22066452 Score: 63
Period size: 2 Copynumber: 22.0 Consensus size: 2
22066398 AAATAAATAG
* *
22066408 AT AT AT AT AT AT AT AT AT AT AT AT AT ACT AC AT AT AT AG AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A-T AT AT AT AT AT AT AT
22066451 AT
1 AT
22066453 GTGCATGTAT
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
2 36 0.95
3 2 0.05
ACGTcount: A:0.49, C:0.04, G:0.02, T:0.44
Consensus pattern (2 bp):
AT
Found at i:22071611 original size:16 final size:16
Alignment explanation
Indices: 22071570--22071613 Score: 54
Period size: 16 Copynumber: 2.8 Consensus size: 16
22071560 CAAAATAAAT
22071570 TAAATATAAAT-AAACA
1 TAAATA-AAATAAAACA
* *
22071586 TATATGAAATAAAACA
1 TAAATAAAATAAAACA
22071602 TAAATAAAATAA
1 TAAATAAAATAA
22071614 TTTATAATTA
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
15 4 0.17
16 19 0.83
ACGTcount: A:0.68, C:0.05, G:0.02, T:0.25
Consensus pattern (16 bp):
TAAATAAAATAAAACA
Found at i:22075335 original size:59 final size:58
Alignment explanation
Indices: 22075271--22075383 Score: 138
Period size: 59 Copynumber: 1.9 Consensus size: 58
22075261 CGGTAGAACA
* * *
22075271 AAAATTCTAAAATGAAATCAAA-AACAATTTTATTAAATGGCAGGATTAAATCCCAAAAT
1 AAAATTATAAAATGAAATCAAATAA-AA-TCTATTAAATGGCAGGAATAAATCCCAAAAT
** *
22075330 AAAATTATATCATTAAATCAAATTAAAATCTATTAAATGGCAGGAATAAATCCC
1 AAAATTATAAAATGAAATCAAA-TAAAATCTATTAAATGGCAGGAATAAATCCC
22075384 GAAACAGAAT
Statistics
Matches: 46, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
59 42 0.91
60 2 0.04
61 2 0.04
ACGTcount: A:0.51, C:0.12, G:0.08, T:0.28
Consensus pattern (58 bp):
AAAATTATAAAATGAAATCAAATAAAATCTATTAAATGGCAGGAATAAATCCCAAAAT
Found at i:22075521 original size:84 final size:84
Alignment explanation
Indices: 22075433--22075822 Score: 487
Period size: 84 Copynumber: 4.6 Consensus size: 84
22075423 AACAATATTG
* * *
22075433 AATAAAATATTATTCAACGACGGGAATAAATCCCCAAACAGATTTTATTTAATTCAATTCAAATT
1 AATAAAATCTTATTAAACGACGGGAATAAATCCCGAAACAGATTTTATTTAATTCAATTCAAATT
22075498 TGGAAACAAAATAAAAGCA
66 TGGAAACAAAATAAAAGCA
22075517 AATAAAATCTTATTAAACGACGGGAATAAATCCCGAAACAGATTTTATTTAATTCAATTCAAATT
1 AATAAAATCTTATTAAACGACGGGAATAAATCCCGAAACAGATTTTATTTAATTCAATTCAAATT
*
22075582 TAGAAACAAAATAAAAGCA
66 TGGAAACAAAATAAAAGCA
* * * * *
22075601 AATAAAATCTTATTAAAAGGCGGGAATAAATCCCGAAATAGATTTTATTTAATTCTATTCTAATT
1 AATAAAATCTTATTAAACGACGGGAATAAATCCCGAAACAGATTTTATTTAATTCAATTCAAATT
** **
22075666 TGGAAACAAAACCAAATAA
66 TGGAAACAAAATAAAAGCA
* * *** * *
22075685 AATAAAATCTTATTAAACGGCAGGAATAAATCTTAAAACAGATTTTATTTAATTTAATTTCTCAT
1 AATAAAATCTTATTAAACGACGGGAATAAATCCCGAAACAGATTTTATTTAATTCAA--T-TCAA
* * *
22075750 TTTTGGAAACAAAATCAAATCA
63 ATTTGGAAACAAAATAAAAGCA
* * *
22075772 AAT-AAATCTTTATTAAAC-AGTGGGAATAAATCTCGAAACAAATTTTATTTA
1 AATAAAATC-TTATTAAACGA-CGGGAATAAATCCCGAAACAGATTTTATTTA
22075823 TCATTTTTGG
Statistics
Matches: 268, Mismatches: 33, Indels: 7
0.87 0.11 0.02
Matches are distributed among these distances:
84 203 0.76
86 6 0.02
87 59 0.22
ACGTcount: A:0.47, C:0.12, G:0.09, T:0.31
Consensus pattern (84 bp):
AATAAAATCTTATTAAACGACGGGAATAAATCCCGAAACAGATTTTATTTAATTCAATTCAAATT
TGGAAACAAAATAAAAGCA
Found at i:22075944 original size:79 final size:78
Alignment explanation
Indices: 22075850--22076134 Score: 374
Period size: 79 Copynumber: 3.6 Consensus size: 78
22075840 ATTAAAATGT
* *
22075850 AATAAATTCGTTGAACTGCGAGAATCAATCCCCAAACGGATTTTATTTTACTCGTTTTTGGAAAT
1 AATAAAATCGTTGAAC-GCGAGAATCAATCCCAAAACGGATTTTATTTTACTCGTTTTTGGAAAT
22075915 AAAACAAAATTTGG
65 AAAACAAAATTTGG
* * * * *
22075929 ACTAAAATCGTTGAACGACAAGAATCAATCCCAAAATGGATTGTGTTTTACTCGTTTTTGGAAAT
1 AATAAAATCGTTGAACG-CGAGAATCAATCCCAAAACGGATTTTATTTTACTCGTTTTTGGAAAT
22075994 AAAACAAAATTTGG
65 AAAACAAAATTTGG
**
22076008 AATAAAATCGTTGAACAGCG-GAAATCAATCCCAAAATAGATTTTATTTTACTCGTTTTTGGAAA
1 AATAAAATCGTTGAAC-GCGAG-AATCAATCCCAAAACGGATTTTATTTTACTCGTTTTTGGAAA
*
22076072 TAAAACAAAATTTAG
64 TAAAACAAAATTTGG
* * * * * *
22076087 AATAAAATCTTTAAACGGCGGGAATCACTCTCGAAACGGATTTTATTT
1 AATAAAATCGTTGAAC-GCGAGAATCAATCCCAAAACGGATTTTATTT
22076135 ACCTTTAATT
Statistics
Matches: 181, Mismatches: 21, Indels: 8
0.86 0.10 0.04
Matches are distributed among these distances:
78 2 0.01
79 177 0.98
80 2 0.01
ACGTcount: A:0.39, C:0.14, G:0.15, T:0.32
Consensus pattern (78 bp):
AATAAAATCGTTGAACGCGAGAATCAATCCCAAAACGGATTTTATTTTACTCGTTTTTGGAAATA
AAACAAAATTTGG
Found at i:22080789 original size:2 final size:2
Alignment explanation
Indices: 22080782--22080813 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
22080772 GTAAATTAAA
22080782 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
22080814 TTACTTTCTT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:22084059 original size:18 final size:18
Alignment explanation
Indices: 22084036--22084138 Score: 73
Period size: 18 Copynumber: 5.4 Consensus size: 18
22084026 ACATCATGAT
22084036 CTGAAGCCCGAAGTCTAA
1 CTGAAGCCCGAAGTCTAA
**
22084054 CTGAAGCACATAAGTGCTAAA
1 CTGAAGC-CCGAAGT-CT-AA
* *
22084075 CAGAAGCCCGAAGGCTAA
1 CTGAAGCCCGAAGTCTAA
*
22084093 CTGAAGCACAC-AAATGCTAAA
1 CTGAAGC-C-CGAAGT-CT-AA
* *
22084114 CGGAAGCCCGAAGGCTAA
1 CTGAAGCCCGAAGTCTAA
22084132 CTGAAGC
1 CTGAAGC
22084139 TCACGAGAGC
Statistics
Matches: 64, Mismatches: 13, Indels: 16
0.69 0.14 0.17
Matches are distributed among these distances:
18 23 0.36
19 13 0.20
20 12 0.19
21 16 0.25
ACGTcount: A:0.39, C:0.25, G:0.23, T:0.13
Consensus pattern (18 bp):
CTGAAGCCCGAAGTCTAA
Found at i:22084080 original size:21 final size:21
Alignment explanation
Indices: 22084056--22084120 Score: 57
Period size: 21 Copynumber: 3.2 Consensus size: 21
22084046 AAGTCTAACT
*
22084056 GAAGCACATAAGTGCTAAACA
1 GAAGCACACAAGTGCTAAACA
*
22084077 GAAGC-C-CGAAG-GCT-AACT
1 GAAGCACAC-AAGTGCTAAACA
* *
22084095 GAAGCACACAAATGCTAAACG
1 GAAGCACACAAGTGCTAAACA
22084116 GAAGC
1 GAAGC
22084121 CCGAAGGCTA
Statistics
Matches: 35, Mismatches: 4, Indels: 10
0.71 0.08 0.20
Matches are distributed among these distances:
18 8 0.23
19 6 0.17
20 8 0.23
21 13 0.37
ACGTcount: A:0.43, C:0.23, G:0.23, T:0.11
Consensus pattern (21 bp):
GAAGCACACAAGTGCTAAACA
Found at i:22084093 original size:39 final size:39
Alignment explanation
Indices: 22084038--22084138 Score: 166
Period size: 39 Copynumber: 2.6 Consensus size: 39
22084028 ATCATGATCT
* * *
22084038 GAAGCCCGAAGTCTAACTGAAGCACATAAGTGCTAAACA
1 GAAGCCCGAAGGCTAACTGAAGCACACAAATGCTAAACA
*
22084077 GAAGCCCGAAGGCTAACTGAAGCACACAAATGCTAAACG
1 GAAGCCCGAAGGCTAACTGAAGCACACAAATGCTAAACA
22084116 GAAGCCCGAAGGCTAACTGAAGC
1 GAAGCCCGAAGGCTAACTGAAGC
22084139 TCACGAGAGC
Statistics
Matches: 58, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 58 1.00
ACGTcount: A:0.40, C:0.25, G:0.24, T:0.12
Consensus pattern (39 bp):
GAAGCCCGAAGGCTAACTGAAGCACACAAATGCTAAACA
Found at i:22086459 original size:4 final size:4
Alignment explanation
Indices: 22086450--22086476 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
22086440 ATATCAACCG
22086450 TATC TATC TATC TATC TATC TATC TAT
1 TATC TATC TATC TATC TATC TATC TAT
22086477 ATACCTATAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.26, C:0.22, G:0.00, T:0.52
Consensus pattern (4 bp):
TATC
Found at i:22087031 original size:70 final size:70
Alignment explanation
Indices: 22086927--22087079 Score: 189
Period size: 70 Copynumber: 2.2 Consensus size: 70
22086917 GTAATAATTT
* ** * *
22086927 TTTTGCGCCCAACGCTAGTTGGATAGACCAACGAATAGTGTGCCCAGCACTAGACAAATAATTGA
1 TTTTGCGCCCAGCGCTAGTCAGATAAACCAACGAATAGTGTGCCCAGCACTAGACAAATAATCGA
22086992 CAATG
66 CAATG
* * * * * **
22086997 TTTTGGGCCCAGCGCTAGTCAGATAAACCGACGAATAGTGTGTCCTGCACTAGTCGGATAATCGA
1 TTTTGCGCCCAGCGCTAGTCAGATAAACCAACGAATAGTGTGCCCAGCACTAGACAAATAATCGA
22087062 CAATG
66 CAATG
*
22087067 TTTTGTGCCCAGC
1 TTTTGCGCCCAGC
22087080 ACTTGTCGAA
Statistics
Matches: 70, Mismatches: 13, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
70 70 1.00
ACGTcount: A:0.28, C:0.24, G:0.24, T:0.25
Consensus pattern (70 bp):
TTTTGCGCCCAGCGCTAGTCAGATAAACCAACGAATAGTGTGCCCAGCACTAGACAAATAATCGA
CAATG
Found at i:22087125 original size:35 final size:35
Alignment explanation
Indices: 22086965--22087201 Score: 164
Period size: 35 Copynumber: 6.8 Consensus size: 35
22086955 CAACGAATAG
* * *
22086965 TGTGCCCAGCACTAGACAAATAATTGACAATGTTT
1 TGTGCCCAGCACTAGTCGAATAATCGACAATGTTT
* * *
22087000 TGGGCCCAGCGCTAGTC-AGATAAACCGACGAATAG---
1 TGTGCCCAGCACTAGTCGA-AT-AATCGAC-AAT-GTTT
* * *
22087035 TGTGTCCTGCACTAGTCGGATAATCGACAATGTTT
1 TGTGCCCAGCACTAGTCGAATAATCGACAATGTTT
*
22087070 TGTGCCCAGCACTTGTCGAATAATCGACAATGTTT
1 TGTGCCCAGCACTAGTCGAATAATCGACAATGTTT
* * * * *
22087105 TGTGCCTAGCGCTAGCCGAATAAACCGTCGAATAG---
1 TGTGCCCAGCACTAGTCGAAT-AATCGAC-AAT-GTTT
* * *
22087140 TGTGCCTAACACTAGTCGAATAATTGACAATGTTT
1 TGTGCCCAGCACTAGTCGAATAATCGACAATGTTT
** **
22087175 TGCACCCAGTGCTAGTCGAATAATCGA
1 TGTGCCCAGCACTAGTCGAATAATCGA
22087202 AAATATCAAT
Statistics
Matches: 154, Mismatches: 34, Indels: 28
0.71 0.16 0.13
Matches are distributed among these distances:
32 2 0.01
33 6 0.04
34 11 0.07
35 117 0.76
36 10 0.06
37 6 0.04
38 2 0.01
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (35 bp):
TGTGCCCAGCACTAGTCGAATAATCGACAATGTTT
Found at i:22087128 original size:105 final size:105
Alignment explanation
Indices: 22086965--22087201 Score: 307
Period size: 105 Copynumber: 2.3 Consensus size: 105
22086955 CAACGAATAG
* * * *
22086965 TGTGCCCAGCACTAGACAAATAATTGACAATGTTTTGGGCCCAGCGCTAGTCAGATAAACCGACG
1 TGTGCCCAGCACTAGTCGAATAATCGACAATGTTTTGGGCCCAGCGCTAGCCAGATAAACCGACG
* *
22087030 AATAGTGTGTCCT-GCACTAGTCGGATAATCGACAATGTTT
66 AATAGTGTG-CCTAACACTAGTCGAATAATCGACAATGTTT
* * * *
22087070 TGTGCCCAGCACTTGTCGAATAATCGACAATGTTTTGTGCCTAGCGCTAGCC-GAATAAACCGTC
1 TGTGCCCAGCACTAGTCGAATAATCGACAATGTTTTGGGCCCAGCGCTAGCCAG-ATAAACCGAC
*
22087134 GAATAGTGTGCCTAACACTAGTCGAATAATTGACAATGTTT
65 GAATAGTGTGCCTAACACTAGTCGAATAATCGACAATGTTT
** **
22087175 TGCACCCAGTGCTAGTCGAATAATCGA
1 TGTGCCCAGCACTAGTCGAATAATCGA
22087202 AAATATCAAT
Statistics
Matches: 114, Mismatches: 16, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
104 4 0.04
105 110 0.96
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (105 bp):
TGTGCCCAGCACTAGTCGAATAATCGACAATGTTTTGGGCCCAGCGCTAGCCAGATAAACCGACG
AATAGTGTGCCTAACACTAGTCGAATAATCGACAATGTTT
Found at i:22093149 original size:3 final size:3
Alignment explanation
Indices: 22093141--22093182 Score: 84
Period size: 3 Copynumber: 14.0 Consensus size: 3
22093131 ATTTCATTTC
22093141 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
22093183 TACATGTTTT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:22097319 original size:12 final size:12
Alignment explanation
Indices: 22097302--22097331 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
22097292 TTAGTGAGTT
22097302 ACACGGCCTAGC
1 ACACGGCCTAGC
*
22097314 ACACGGCCTGGC
1 ACACGGCCTAGC
22097326 ACACGG
1 ACACGG
22097332 TCATGTGTCA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.23, C:0.40, G:0.30, T:0.07
Consensus pattern (12 bp):
ACACGGCCTAGC
Found at i:22099961 original size:10 final size:10
Alignment explanation
Indices: 22099942--22100011 Score: 90
Period size: 10 Copynumber: 7.0 Consensus size: 10
22099932 TGAAATTCTA
22099942 AAAGATAAAT
1 AAAGATAAAT
22099952 ACAA-ATAAAT
1 A-AAGATAAAT
*
22099962 AAAGATAATT
1 AAAGATAAAT
22099972 AAAGATAAAT
1 AAAGATAAAT
22099982 AAAGATAAAT
1 AAAGATAAAT
*
22099992 AAATATAAAT
1 AAAGATAAAT
22100002 GAAA-ATAAAT
1 -AAAGATAAAT
22100012 CCTAGAATTA
Statistics
Matches: 54, Mismatches: 3, Indels: 6
0.86 0.05 0.10
Matches are distributed among these distances:
9 2 0.04
10 47 0.87
11 5 0.09
ACGTcount: A:0.69, C:0.01, G:0.07, T:0.23
Consensus pattern (10 bp):
AAAGATAAAT
Found at i:22101044 original size:50 final size:50
Alignment explanation
Indices: 22100979--22101074 Score: 117
Period size: 50 Copynumber: 1.9 Consensus size: 50
22100969 GACTCACCGT
*
22100979 AGCTCATATGAGCTTA-CCA-ATTCTCAGCTCGTAA-GAGCTTACCGTTATTC
1 AGCTCATAGGAGCTTATCCATATT-T-AGCTCG-AATGAGCTTACCGTTATTC
* *
22101029 AGCTCGTAGGAGCTTATCGATATTTAGCTCGAATGAGCTTACCGTT
1 AGCTCATAGGAGCTTATCCATATTTAGCTCGAATGAGCTTACCGTT
22101075 TATCGCTCAT
Statistics
Matches: 40, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
49 2 0.05
50 32 0.80
51 3 0.08
52 3 0.08
ACGTcount: A:0.25, C:0.23, G:0.20, T:0.32
Consensus pattern (50 bp):
AGCTCATAGGAGCTTATCCATATTTAGCTCGAATGAGCTTACCGTTATTC
Found at i:22101052 original size:25 final size:25
Alignment explanation
Indices: 22100979--22101072 Score: 93
Period size: 25 Copynumber: 3.8 Consensus size: 25
22100969 GACTCACCGT
* * *
22100979 AGCTCATATGAGCTTACCAAT-TCTC
1 AGCTCGTAAGAGCTTACCGATAT-TC
*
22101004 AGCTCGTAAGAGCTTACCGTTATTC
1 AGCTCGTAAGAGCTTACCGATATTC
* * *
22101029 AGCTCGTAGGAGCTTATCGATATTT
1 AGCTCGTAAGAGCTTACCGATATTC
22101054 AGCTCG-AATGAGCTTACCG
1 AGCTCGTAA-GAGCTTACCG
22101073 TTTATCGCTC
Statistics
Matches: 57, Mismatches: 10, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
24 1 0.02
25 55 0.96
26 1 0.02
ACGTcount: A:0.26, C:0.23, G:0.20, T:0.31
Consensus pattern (25 bp):
AGCTCGTAAGAGCTTACCGATATTC
Found at i:22103954 original size:50 final size:50
Alignment explanation
Indices: 22103889--22103984 Score: 126
Period size: 50 Copynumber: 1.9 Consensus size: 50
22103879 GACTCACCGT
*
22103889 AGCTCGTATGAGCTTA-CAGAT-TCTCAGCTCGTAA-GAGCTTACCGTTATTC
1 AGCTCGTAGGAGCTTATC-GATAT-TCAGCTCG-AATGAGCTTACCGTTATTC
*
22103939 AGCTCGTAGGAGCTTATCGATATTTAGCTCGAATGAGCTTACCGTT
1 AGCTCGTAGGAGCTTATCGATATTCAGCTCGAATGAGCTTACCGTT
22103985 TATCGCTTGT
Statistics
Matches: 41, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
49 2 0.05
50 37 0.90
51 2 0.05
ACGTcount: A:0.24, C:0.22, G:0.22, T:0.32
Consensus pattern (50 bp):
AGCTCGTAGGAGCTTATCGATATTCAGCTCGAATGAGCTTACCGTTATTC
Found at i:22103962 original size:25 final size:24
Alignment explanation
Indices: 22103889--22103980 Score: 96
Period size: 25 Copynumber: 3.7 Consensus size: 24
22103879 GACTCACCGT
22103889 AGCTCGTATGAGCTTACAGAT-TCTC
1 AGCTCGTATGAGCTTAC-GATAT-TC
* *
22103914 AGCTCGTAAGAGCTTACCGTTATTC
1 AGCTCGTATGAGCTTA-CGATATTC
* *
22103939 AGCTCGTAGGAGCTTATCGATATTT
1 AGCTCGTATGAGCTTA-CGATATTC
*
22103964 AGCTCGAATGAGCTTAC
1 AGCTCGTATGAGCTTAC
22103981 CGTTTATCGC
Statistics
Matches: 57, Mismatches: 8, Indels: 5
0.81 0.11 0.07
Matches are distributed among these distances:
24 1 0.02
25 54 0.95
26 2 0.04
ACGTcount: A:0.25, C:0.22, G:0.22, T:0.32
Consensus pattern (24 bp):
AGCTCGTATGAGCTTACGATATTC
Found at i:22109104 original size:2 final size:2
Alignment explanation
Indices: 22109097--22109128 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
22109087 ACTTAAACCA
22109097 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
22109129 TTTAAGCCAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:22114527 original size:46 final size:46
Alignment explanation
Indices: 22114460--22114630 Score: 215
Period size: 46 Copynumber: 3.7 Consensus size: 46
22114450 AACCCGCCCC
*
22114460 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
22114506 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-GCAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCATCCA
* * * * *
22114554 TCA-CGAACTCGGACTCAACTCAACGAGTTTGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
22114599 TAAGTGAACTCGGACTCAACTCAACGAGTTCG
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCG
22114631 AATGCTCAAC
Statistics
Matches: 107, Mismatches: 9, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 58 0.54
47 27 0.25
48 3 0.03
49 2 0.02
50 4 0.04
51 3 0.03
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
Found at i:22114572 original size:93 final size:93
Alignment explanation
Indices: 22114465--22114635 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
22114455 GCCCCTAAGT
* *
22114465 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
22114530 CGAGTTCGGATGCCTAGTTGCATCTCAC
66 CGAGTTCGAATGCCTAGTTGCATCTCAC
* *
22114558 GAACTCGGACTCAACTCAACGAGTTTGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
22114623 CGAGTTCGAATGC
66 CGAGTTCGAATGC
22114636 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGAATGCCTAGTTGCATCTCAC
Found at i:22115087 original size:30 final size:30
Alignment explanation
Indices: 22115053--22115112 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
22115043 ATTTAATATG
22115053 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
22115083 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
22115113 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:22123878 original size:26 final size:26
Alignment explanation
Indices: 22123842--22124003 Score: 245
Period size: 26 Copynumber: 6.2 Consensus size: 26
22123832 CATGATATTC
22123842 TTATCATGAAACATTTACCTAA-CTCA
1 TTATCATGAAACATTTACCTAACCT-A
*
22123868 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCTA
* *
22123894 TTATCATGGAACATTTATCTAACCTA
1 TTATCATGAAACATTTACCTAACCTA
* *
22123920 TTATCATGAAGCATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCTA
*
22123946 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCTA
*
22123972 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCTA
22123998 TTATCA
1 TTATCA
22124004 ATTTGTATCA
Statistics
Matches: 124, Mismatches: 11, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
26 123 0.99
27 1 0.01
ACGTcount: A:0.36, C:0.23, G:0.06, T:0.35
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCTA
Found at i:22123975 original size:78 final size:78
Alignment explanation
Indices: 22123842--22124003 Score: 279
Period size: 78 Copynumber: 2.1 Consensus size: 78
22123832 CATGATATTC
*
22123842 TTATCATGAAACATTTACCTAACTCATTATCATGAAACATTTACCTAACCCATTATCATGGAACA
1 TTATCATGAAACATTTACCTAACCCATTATCATGAAACATTTACCTAACCCATTATCATGGAACA
*
22123907 TTTATCTAACCTA
66 TTTACCTAACCTA
* * *
22123920 TTATCATGAAGCATTTACCTAACCCATTATCATGGAACATTTACCTAACCTATTATCATGGAACA
1 TTATCATGAAACATTTACCTAACCCATTATCATGAAACATTTACCTAACCCATTATCATGGAACA
22123985 TTTACCTAACCTA
66 TTTACCTAACCTA
22123998 TTATCA
1 TTATCA
22124004 ATTTGTATCA
Statistics
Matches: 79, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
78 79 1.00
ACGTcount: A:0.36, C:0.23, G:0.06, T:0.35
Consensus pattern (78 bp):
TTATCATGAAACATTTACCTAACCCATTATCATGAAACATTTACCTAACCCATTATCATGGAACA
TTTACCTAACCTA
Found at i:22131156 original size:25 final size:24
Alignment explanation
Indices: 22131119--22131212 Score: 93
Period size: 25 Copynumber: 3.8 Consensus size: 24
22131109 GACTCACTGT
*
22131119 AGCTCGTATGAGCTTACCGATTCTC
1 AGCTCGTAAGAGCTTACCGATT-TC
*
22131144 AGCTTGTAAGAGCTTACC-ATTATTC
1 AGCTCGTAAGAGCTTACCGA-T-TTC
* *
22131169 AGCTCGTAGGAGCTTACTGATATTC
1 AGCTCGTAAGAGCTTACCGAT-TTC
22131194 AGCTCG-AATGAGCTTACCG
1 AGCTCGTAA-GAGCTTACCG
22131213 TTTATTGCTC
Statistics
Matches: 58, Mismatches: 7, Indels: 8
0.79 0.10 0.11
Matches are distributed among these distances:
24 2 0.03
25 54 0.93
26 2 0.03
ACGTcount: A:0.24, C:0.23, G:0.21, T:0.31
Consensus pattern (24 bp):
AGCTCGTAAGAGCTTACCGATTTC
Found at i:22142761 original size:22 final size:22
Alignment explanation
Indices: 22142736--22142778 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
22142726 TATAATTTTT
22142736 ATTA-ATTCATATTTTAATAATA
1 ATTATATT-ATATTTTAATAATA
* *
22142758 ATTATATTTTATTTTATTAAT
1 ATTATATTATATTTTAATAAT
22142779 TTGTATTTAG
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 15 0.83
23 3 0.17
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.58
Consensus pattern (22 bp):
ATTATATTATATTTTAATAATA
Found at i:22142786 original size:37 final size:39
Alignment explanation
Indices: 22142706--22142779 Score: 102
Period size: 37 Copynumber: 1.9 Consensus size: 39
22142696 GGTTATATGT
22142706 TATTTTATAATATTATATATTATAATTTTTATTAATTCA
1 TATTTTATAATATTATATATTATAATTTTTATTAATTCA
22142745 TATTTTAATAATAATTATAT-TT-T-A-TTTTATTAATT
1 TATTTT-ATAAT-ATTATATATTATAATTTTTATTAATT
22142780 TGTATTTAGT
Statistics
Matches: 33, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
37 11 0.33
38 1 0.03
39 7 0.21
40 7 0.21
41 7 0.21
ACGTcount: A:0.38, C:0.01, G:0.00, T:0.61
Consensus pattern (39 bp):
TATTTTATAATATTATATATTATAATTTTTATTAATTCA
Found at i:22143026 original size:16 final size:16
Alignment explanation
Indices: 22143007--22143046 Score: 62
Period size: 16 Copynumber: 2.5 Consensus size: 16
22142997 CTGATTATAG
22143007 CTCTATTTTATTACAA
1 CTCTATTTTATTACAA
*
22143023 CTCTATTATATTACAA
1 CTCTATTTTATTACAA
*
22143039 CCCTATTT
1 CTCTATTT
22143047 CATTCCCCCA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.30, C:0.23, G:0.00, T:0.47
Consensus pattern (16 bp):
CTCTATTTTATTACAA
Found at i:22143641 original size:63 final size:63
Alignment explanation
Indices: 22143542--22143668 Score: 254
Period size: 63 Copynumber: 2.0 Consensus size: 63
22143532 TCCTTTACTT
22143542 GGTCTCCATGTTATTAAGTAAAATACACATTTTGAATTTGACAAAAAGAAACAATCAGTGATA
1 GGTCTCCATGTTATTAAGTAAAATACACATTTTGAATTTGACAAAAAGAAACAATCAGTGATA
22143605 GGTCTCCATGTTATTAAGTAAAATACACATTTTGAATTTGACAAAAAGAAACAATCAGTGATA
1 GGTCTCCATGTTATTAAGTAAAATACACATTTTGAATTTGACAAAAAGAAACAATCAGTGATA
22143668 G
1 G
22143669 AAAGCTTTGT
Statistics
Matches: 64, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
63 64 1.00
ACGTcount: A:0.43, C:0.13, G:0.15, T:0.30
Consensus pattern (63 bp):
GGTCTCCATGTTATTAAGTAAAATACACATTTTGAATTTGACAAAAAGAAACAATCAGTGATA
Found at i:22147358 original size:30 final size:32
Alignment explanation
Indices: 22147324--22147388 Score: 82
Period size: 30 Copynumber: 2.1 Consensus size: 32
22147314 AATCCTTATG
*
22147324 TTTTTTTGAAAA-TCTTAATTA-AAC-CTTAAA
1 TTTTTTTGAAAATTC-TAATTAGAACTCTAAAA
*
22147354 TTTTTTTTAAAATTCTAATTAGAACTCTAAAA
1 TTTTTTTGAAAATTCTAATTAGAACTCTAAAA
22147386 TTT
1 TTT
22147389 AAAAAAAAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
30 17 0.57
31 5 0.17
32 8 0.27
ACGTcount: A:0.38, C:0.09, G:0.03, T:0.49
Consensus pattern (32 bp):
TTTTTTTGAAAATTCTAATTAGAACTCTAAAA
Found at i:22152705 original size:40 final size:40
Alignment explanation
Indices: 22152648--22152891 Score: 300
Period size: 40 Copynumber: 6.1 Consensus size: 40
22152638 TCGAATGATG
* * *
22152648 TCCGGGATAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATA
*
22152688 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-A
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA
* *
22152727 TTCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
*
22152767 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
* *
22152807 ACCGGGCTATGTCCCGAAGGCATTTGTGCGAGTTACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
* * **
22152847 ACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATA
22152887 TCCGG
1 TCCGG
22152892 TTAAATTCCG
Statistics
Matches: 182, Mismatches: 15, Indels: 14
0.86 0.07 0.07
Matches are distributed among these distances:
39 37 0.20
40 137 0.75
41 8 0.04
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
Done.