Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr02 99090824
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 99090824
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 317 characters in sequence are not A, C, G, or T
File 81 of 318
Found at i:23901840 original size:85 final size:84
Alignment explanation
Indices: 23901707--23901863 Score: 226
Period size: 85 Copynumber: 1.9 Consensus size: 84
23901697 TTGAGATTAC
* * * *
23901707 GTGTAAGACCATATCTAGGATATGGCATCTATATGAGATTTCATGTAAGACCATATCTGGGATAT
1 GTGTAAGACCATATCTAGGATATGGCATCGATATGAAATTACATGTAAGACCATATCTAGGATAT
23901772 AGCATTGATATGAGACTTT
66 AGCATTGATATGAGACTTT
* *
23901791 GTGTAAGACCATAGT-TGGGCTAGTGGCATCGATATGAAATTACATGTAAGACCATATCTAGGAT
1 GTGTAAGACCATA-TCTAGGATA-TGGCATCGATATGAAATTACATGTAAGACCATATCTAGGAT
*
23901855 ATGGCATTG
64 ATAGCATTG
23901864 GTACGGTACT
Statistics
Matches: 64, Mismatches: 7, Indels: 3
0.86 0.09 0.04
Matches are distributed among these distances:
84 18 0.28
85 46 0.72
ACGTcount: A:0.32, C:0.13, G:0.24, T:0.31
Consensus pattern (84 bp):
GTGTAAGACCATATCTAGGATATGGCATCGATATGAAATTACATGTAAGACCATATCTAGGATAT
AGCATTGATATGAGACTTT
Found at i:23905820 original size:46 final size:46
Alignment explanation
Indices: 23905753--23905927 Score: 205
Period size: 46 Copynumber: 3.8 Consensus size: 46
23905743 TGTAACCCGC
* *
23905753 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGTTCACAT
23905799 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA--C--GTTCACAT
* * * * *
23905848 --TTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGTTCACAT
* *
23905891 CCATAAATGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
23905928 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 16
0.81 0.07 0.12
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 2 0.02
46 93 0.84
47 2 0.02
48 1 0.01
49 3 0.03
50 3 0.03
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGTTCACAT
Found at i:23905872 original size:92 final size:92
Alignment explanation
Indices: 23905761--23905928 Score: 282
Period size: 92 Copynumber: 1.8 Consensus size: 92
23905751 GCCCATAAGT
* * * *
23905761 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAATGAACTCGGACTCAACTCAA
23905826 CGAGCTCGGATCCTAGTTACATTTCAC
66 CGAGCTCGGATCCTAGTTACATTTCAC
*
23905853 GAACTCGGACTCAACTCAACGAGTTCGGACATTCACATCCATAAATGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAATGAACTCGGACTCAACTCAA
*
23905918 CGAGTTCGGAT
66 CGAGCTCGGAT
23905929 GCTCAACCAT
Statistics
Matches: 70, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
92 70 1.00
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.21
Consensus pattern (92 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAATGAACTCGGACTCAACTCAA
CGAGCTCGGATCCTAGTTACATTTCAC
Found at i:23907527 original size:112 final size:113
Alignment explanation
Indices: 23907300--23907546 Score: 273
Period size: 112 Copynumber: 2.2 Consensus size: 113
23907290 GTATAGCTTG
** * * * *
23907300 TTTGAGCCCATTCAGTATAATCAATGGATATCGTTCGTTTAAGCAACTTTTTCAGTATAATTAGT
1 TTTGAGCCCATTCAGTATAATCAATGGATATCACTCATTGAAGCAAC-TTTTCAATATAATCAGT
** * * *
23907365 AGTTATTACTTTTTTGAGCACGTTCAATATATTTAGTAAATATTGGTCA
65 AGACATTACTGTTTTGAGCACGTTCAATATATTCAGTAAATATTGCTCA
* * **
23907414 TTTGAGCCCATTTAGTATAATCAGTGGATATCACTCATTGGGGCAAC-TTTCAATATAATCAGTA
1 TTTGAGCCCATTCAGTATAATCAATGGATATCACTCATTGAAGCAACTTTTCAATATAATCAGTA
* * *
23907478 GACATTGCTGTTTTGAGCACGTTCAGTAGT-TTCAGTAGATATTGCTCA
66 GACATTACTGTTTTGAGCACGTTCAATA-TATTCAGTAAATATTGCTCA
** *
23907526 TTTGAGCATATTCAATATAAT
1 TTTGAGCCCATTCAGTATAAT
23907547 AGTAGACATT
Statistics
Matches: 110, Mismatches: 22, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
112 70 0.64
113 1 0.01
114 39 0.35
ACGTcount: A:0.30, C:0.15, G:0.17, T:0.39
Consensus pattern (113 bp):
TTTGAGCCCATTCAGTATAATCAATGGATATCACTCATTGAAGCAACTTTTCAATATAATCAGTA
GACATTACTGTTTTGAGCACGTTCAATATATTCAGTAAATATTGCTCA
Found at i:23907558 original size:36 final size:37
Alignment explanation
Indices: 23907377--23907573 Score: 146
Period size: 37 Copynumber: 5.3 Consensus size: 37
23907367 TTATTACTTT
* * * * * *
23907377 TTTGAGCACGTTCAATATATTTAGTAAATATTGGTCA
1 TTTGAGCACATTCAATATAATCAGTAGACATTGCTCA
* * * * * **
23907414 TTTGAGCCCATTTAGTATAATCAGTGGATATCACTCA
1 TTTGAGCACATTCAATATAATCAGTAGACATTGCTCA
* * * **
23907451 TTGGGGCAACTTTCAATATAATCAGTAGACATTGCTGT
1 TTTGAGC-ACATTCAATATAATCAGTAGACATTGCTCA
* * * *
23907489 TTTGAGCACGTTCAGTAGT-TTCAGTAGATATTGCTCA
1 TTTGAGCACATTCAATA-TAATCAGTAGACATTGCTCA
*
23907526 TTTGAGCATATTCAATATAAT-AGTAGACATTGCTCA
1 TTTGAGCACATTCAATATAATCAGTAGACATTGCTCA
*
23907562 TTTGAGCCCATT
1 TTTGAGCACATT
23907574 TAGTATTCCA
Statistics
Matches: 119, Mismatches: 38, Indels: 7
0.73 0.23 0.04
Matches are distributed among these distances:
36 25 0.21
37 68 0.57
38 26 0.22
ACGTcount: A:0.29, C:0.16, G:0.18, T:0.37
Consensus pattern (37 bp):
TTTGAGCACATTCAATATAATCAGTAGACATTGCTCA
Found at i:23910342 original size:29 final size:29
Alignment explanation
Indices: 23910300--23910356 Score: 105
Period size: 29 Copynumber: 2.0 Consensus size: 29
23910290 TGGAAGCCAC
*
23910300 AAATAATCCATAATATCAAAGGTTAACAG
1 AAATAAGCCATAATATCAAAGGTTAACAG
23910329 AAATAAGCCATAATATCAAAGGTTAACA
1 AAATAAGCCATAATATCAAAGGTTAACA
23910357 TAAAGCATAC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.53, C:0.14, G:0.11, T:0.23
Consensus pattern (29 bp):
AAATAAGCCATAATATCAAAGGTTAACAG
Found at i:23911926 original size:23 final size:23
Alignment explanation
Indices: 23911900--23911943 Score: 79
Period size: 23 Copynumber: 1.9 Consensus size: 23
23911890 TTCTATAAAT
23911900 CGAGGCTATTACGATAAAATGTA
1 CGAGGCTATTACGATAAAATGTA
*
23911923 CGAGGTTATTACGATAAAATG
1 CGAGGCTATTACGATAAAATG
23911944 CTTATTGATC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.39, C:0.11, G:0.23, T:0.27
Consensus pattern (23 bp):
CGAGGCTATTACGATAAAATGTA
Found at i:23916112 original size:21 final size:21
Alignment explanation
Indices: 23916082--23916130 Score: 89
Period size: 21 Copynumber: 2.3 Consensus size: 21
23916072 AGATAGTTCA
*
23916082 AGAAAGGGCTATAAATAGTTG
1 AGAAATGGCTATAAATAGTTG
23916103 AGAAATGGCTATAAATAGTTG
1 AGAAATGGCTATAAATAGTTG
23916124 AGAAATG
1 AGAAATG
23916131 AACTCCTAGG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.45, C:0.04, G:0.27, T:0.24
Consensus pattern (21 bp):
AGAAATGGCTATAAATAGTTG
Found at i:23917294 original size:67 final size:67
Alignment explanation
Indices: 23917155--23917281 Score: 182
Period size: 67 Copynumber: 1.9 Consensus size: 67
23917145 GACAACACGG
* * * *
23917155 AGAGTCTACCAGGACATTAAACATGAGGTATGATGTGTAAGACCACAGTTCAACTATAGCAACAT
1 AGAGTCCACCAGGACATTAAACATGAGGTATGATGTATAAGACCACAGCTCAACTATAACAACAT
23917220 AA
66 AA
* * * *
23917222 AGAGTCCACTAGGACATTAAACATGGGGTATGATGTATAAGACCATAGCTCGACTATAAC
1 AGAGTCCACCAGGACATTAAACATGAGGTATGATGTATAAGACCACAGCTCAACTATAAC
23917282 TGTATATAGA
Statistics
Matches: 52, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
67 52 1.00
ACGTcount: A:0.39, C:0.18, G:0.20, T:0.23
Consensus pattern (67 bp):
AGAGTCCACCAGGACATTAAACATGAGGTATGATGTATAAGACCACAGCTCAACTATAACAACAT
AA
Found at i:23917304 original size:67 final size:67
Alignment explanation
Indices: 23917155--23917309 Score: 175
Period size: 67 Copynumber: 2.3 Consensus size: 67
23917145 GACAACACGG
* * * *
23917155 AGAGTCTACCAGGACATTAAACATGAGGTATGATGTGTAAGACCACAGTTCAACTATAGCAACAT
1 AGAGTCAACCAGGACATTAAACATGAGGTATGATGTATAAGACCACAGCTCAACTATAACAACAT
23917220 AA
66 AA
* * * * * ***
23917222 AGAGTCCACTAGGACATTAAACATGGGGTATGATGTATAAGACCATAGCTCGACTATAACTGTAT
1 AGAGTCAACCAGGACATTAAACATGAGGTATGATGTATAAGACCACAGCTCAACTATAACAACAT
*
23917287 AT
66 AA
* *
23917289 AGAGTCAACCGGGACAATAAA
1 AGAGTCAACCAGGACATTAAA
23917310 TTTGGTGTAG
Statistics
Matches: 72, Mismatches: 16, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
67 72 1.00
ACGTcount: A:0.39, C:0.17, G:0.21, T:0.23
Consensus pattern (67 bp):
AGAGTCAACCAGGACATTAAACATGAGGTATGATGTATAAGACCACAGCTCAACTATAACAACAT
AA
Found at i:23934429 original size:17 final size:19
Alignment explanation
Indices: 23934402--23934437 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
23934392 ATGTAAAACC
23934402 CATGAGTATGAACT-TTGG
1 CATGAGTATGAACTCTTGG
23934420 CATGAG-ATGAACTCTTGG
1 CATGAGTATGAACTCTTGG
23934438 TAAGAATGCT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 7 0.41
18 10 0.59
ACGTcount: A:0.28, C:0.14, G:0.28, T:0.31
Consensus pattern (19 bp):
CATGAGTATGAACTCTTGG
Found at i:23945240 original size:50 final size:49
Alignment explanation
Indices: 23945165--23945339 Score: 226
Period size: 50 Copynumber: 3.5 Consensus size: 49
23945155 TGAGTACACG
* * * *
23945165 TGTGTAGTACTAAGTGTAAGCTACTACATGTACCATACTGTTAAGTCGCA
1 TGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGA-TGTTAGGTCGCA
* * * *
23945215 TGTGTAGTACTAAGTGTAGGCTACTACGTGTATCAGATGGTGAGGTCACG
1 TGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGAT-GTTAGGTCGCA
*
23945265 TGTGTAGTACTAAGTGTAGGCTACTACGTGTACCGGATTGTT-GGTCGCA
1 TGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGA-TGTTAGGTCGCA
*
23945314 TGTGTAGTACTAAGTGCAGGCTACTA
1 TGTGTAGTACTAAGTGTAGGCTACTA
23945340 TGCGTATCAG
Statistics
Matches: 109, Mismatches: 14, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
49 31 0.28
50 77 0.71
51 1 0.01
ACGTcount: A:0.25, C:0.16, G:0.27, T:0.31
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATGTTAGGTCGCA
Found at i:23952683 original size:50 final size:49
Alignment explanation
Indices: 23952555--23952784 Score: 167
Period size: 50 Copynumber: 4.7 Consensus size: 49
23952545 ATTGTGAGTA
* *
23952555 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTTAC-C-AT-ACTGTTAAGTT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTATG-TACTCAATGAC--TT-AGAT
*
23952605 GCA--TGTGTAGTACTAAGTGCAGGCTACTATGCTACTCAATGACTTCGAT
1 -CACGTGTGTAGTACTAAGTGCAGGCTACTATG-TACTCAATGACTTAGAT
* * *
23952654 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTA-TCAGATG-GTGAGGT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTA--TGTACTCA-ATGACTTAGAT
* * *
23952704 CACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTAC-CGGATTG--TT-GGT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTA--TGTACTC--AATGACTTAGAT
* *
23952753 CACATGTGTAGTACTAAATGCAGGCTACTATG
1 CACGTGTGTAGTACTAAGTGCAGGCTACTATG
23952785 CGTATCAGAT
Statistics
Matches: 154, Mismatches: 14, Indels: 26
0.79 0.07 0.13
Matches are distributed among these distances:
47 2 0.01
48 2 0.01
49 62 0.40
50 72 0.47
51 11 0.07
52 5 0.03
ACGTcount: A:0.25, C:0.18, G:0.26, T:0.30
Consensus pattern (49 bp):
CACGTGTGTAGTACTAAGTGCAGGCTACTATGTACTCAATGACTTAGAT
Found at i:23952761 original size:99 final size:98
Alignment explanation
Indices: 23952559--23952794 Score: 250
Period size: 99 Copynumber: 2.4 Consensus size: 98
23952549 TGAGTACACG
* * * *
23952559 TGTGTAGTACTAAGTGCAGGCTACTACGT-TACCATACTGTTAAGTTGCATGTGTAGTACTAAGT
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGA-TGGTAAGGTGCATGTGTAGTACTAAGT
*
23952623 GCAGGCTACTATGCTACTCAATGACTTCGATCACG
65 GCAGGCTACTATGCTACTCAATGA-TTCGATCACA
*
23952658 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTGAGGT-CACGTGTGTAGTACTAAG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTAAGGTGCA--TGTGTAGTACTAAG
* * *
23952722 TGTAGGCTACTACGTG-TAC-CGGATTG-TT-GGTCACA
64 TGCAGGCTACTA--TGCTACTC--AATGATTCGATCACA
* * *
23952757 TGTGTAGTACTAAATGCAGGCTACTATGCGTATCAGAT
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGAT
23952795 AGCTTTGGCT
Statistics
Matches: 118, Mismatches: 12, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
98 2 0.02
99 75 0.64
100 33 0.28
101 3 0.03
102 5 0.04
ACGTcount: A:0.25, C:0.18, G:0.26, T:0.31
Consensus pattern (98 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTAAGGTGCATGTGTAGTACTAAGTG
CAGGCTACTATGCTACTCAATGATTCGATCACA
Found at i:23956945 original size:18 final size:17
Alignment explanation
Indices: 23956913--23956946 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
23956903 CACATTGAAG
23956913 TGTTTTATCGAAAACCT
1 TGTTTTATCGAAAACCT
*
23956930 TGTTTATATTGAAAACC
1 TGTTT-TATCGAAAACC
23956947 CTTCTTTGAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.32, C:0.15, G:0.12, T:0.41
Consensus pattern (17 bp):
TGTTTTATCGAAAACCT
Found at i:23960588 original size:20 final size:20
Alignment explanation
Indices: 23960565--23960602 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
23960555 CACATCCAAA
*
23960565 TACAAAATTTTAAAAATCTT
1 TACAAAATATTAAAAATCTT
*
23960585 TACAAAATATTGAAAATC
1 TACAAAATATTAAAAATC
23960603 GCGAATAAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.11, G:0.03, T:0.34
Consensus pattern (20 bp):
TACAAAATATTAAAAATCTT
Found at i:23969001 original size:28 final size:28
Alignment explanation
Indices: 23968959--23969031 Score: 101
Period size: 28 Copynumber: 2.6 Consensus size: 28
23968949 TGGCCCCTTT
* *
23968959 AGGCCTAATCTCATTCACATGGCCCATC
1 AGGCCCAATCACATTCACATGGCCCATC
* * *
23968987 GGGCCCAATCACATTTATATGGCCCATC
1 AGGCCCAATCACATTCACATGGCCCATC
23969015 AGGCCCAATCACATTCA
1 AGGCCCAATCACATTCA
23969032 TAGTCATGCA
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
28 38 1.00
ACGTcount: A:0.27, C:0.34, G:0.15, T:0.23
Consensus pattern (28 bp):
AGGCCCAATCACATTCACATGGCCCATC
Found at i:23975585 original size:17 final size:18
Alignment explanation
Indices: 23975563--23975596 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
23975553 CACATTGAAG
23975563 TATTTT-ATCGAAAACCT
1 TATTTTCATCGAAAACCT
*
23975580 TATTTTCATTGAAAACC
1 TATTTTCATCGAAAACC
23975597 CTTCATTGAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.35, C:0.18, G:0.06, T:0.41
Consensus pattern (18 bp):
TATTTTCATCGAAAACCT
Found at i:23976888 original size:28 final size:28
Alignment explanation
Indices: 23976827--23976947 Score: 136
Period size: 28 Copynumber: 4.3 Consensus size: 28
23976817 GATCCATACT
* * *
23976827 TATTCATTTGGCCCCTTTAGGCCCAATC-
1 TATTCATATGG-CCCATCAGGCCCAATCA
*
23976855 TGATTCATATGGCCCATCAAGCCCAATCA
1 T-ATTCATATGGCCCATCAGGCCCAATCA
* *
23976884 CATTCATATGCCCCATCAGGCCCAATCA
1 TATTCATATGGCCCATCAGGCCCAATCA
* * *
23976912 TTTTCATATGGCTCGTCAGGCCCAATCA
1 TATTCATATGGCCCATCAGGCCCAATCA
23976940 TATTCATA
1 TATTCATA
23976948 GTCATGCAAT
Statistics
Matches: 78, Mismatches: 13, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
28 69 0.88
29 9 0.12
ACGTcount: A:0.26, C:0.31, G:0.13, T:0.30
Consensus pattern (28 bp):
TATTCATATGGCCCATCAGGCCCAATCA
Found at i:23977484 original size:20 final size:21
Alignment explanation
Indices: 23977456--23977494 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 21
23977446 ACCAAACAAA
*
23977456 AAGTGACTCGT-AATCATCTT
1 AAGTCACTCGTAAATCATCTT
*
23977476 AAGTCACTCTTAAATCATC
1 AAGTCACTCGTAAATCATC
23977495 CATGACCATT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 9 0.56
21 7 0.44
ACGTcount: A:0.33, C:0.23, G:0.10, T:0.33
Consensus pattern (21 bp):
AAGTCACTCGTAAATCATCTT
Found at i:23978175 original size:55 final size:56
Alignment explanation
Indices: 23978091--23978204 Score: 194
Period size: 55 Copynumber: 2.1 Consensus size: 56
23978081 TCTTCAGAGT
* *
23978091 TCACATCTAACGCCACTACTGGCCATTTATTGAGCAAAAATAAATCCTTC-CTTGA
1 TCACATCCAACACCACTACTGGCCATTTATTGAGCAAAAATAAATCCTTCTCTTGA
*
23978146 TCACATCCAACACCACTACTGGCCATTTATTGAGCAAAAATAAATCCTTCTTTTGA
1 TCACATCCAACACCACTACTGGCCATTTATTGAGCAAAAATAAATCCTTCTCTTGA
23978202 TCA
1 TCA
23978205 AGGAGGGATT
Statistics
Matches: 55, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
55 48 0.87
56 7 0.13
ACGTcount: A:0.33, C:0.27, G:0.10, T:0.30
Consensus pattern (56 bp):
TCACATCCAACACCACTACTGGCCATTTATTGAGCAAAAATAAATCCTTCTCTTGA
Found at i:23988584 original size:85 final size:84
Alignment explanation
Indices: 23988434--23988600 Score: 325
Period size: 85 Copynumber: 2.0 Consensus size: 84
23988424 TGAGTTCCTA
23988434 ATTTAGTCCGACTTATTTCTAATGTATAAATAGGACTTTAAGGGTCCATTTAAGGGACAACATGA
1 ATTTAGTCCGACTTATTTCTAATGTATAAATAGGACTTTAAGGGTCCATTTAAGGGACAACATGA
23988499 TTGAATTATGATTTGACAC
66 TTGAATTATGATTTGACAC
23988518 ATTTAGTCCCGACTTATTTCTAATGTATAAATAGGACTTTAAGGGTCCATTTAAGGGACAACATG
1 ATTTAGT-CCGACTTATTTCTAATGTATAAATAGGACTTTAAGGGTCCATTTAAGGGACAACATG
23988583 ATTGAATTATGATTTGAC
65 ATTGAATTATGATTTGAC
23988601 TCCGATATGA
Statistics
Matches: 82, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
84 7 0.09
85 75 0.91
ACGTcount: A:0.33, C:0.13, G:0.18, T:0.36
Consensus pattern (84 bp):
ATTTAGTCCGACTTATTTCTAATGTATAAATAGGACTTTAAGGGTCCATTTAAGGGACAACATGA
TTGAATTATGATTTGACAC
Found at i:23989772 original size:30 final size:31
Alignment explanation
Indices: 23989732--23989794 Score: 101
Period size: 30 Copynumber: 2.1 Consensus size: 31
23989722 CCTTTTCATA
23989732 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
**
23989763 TTTCA-ATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
23989793 TT
1 TT
23989795 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
30 25 0.83
31 5 0.17
ACGTcount: A:0.24, C:0.24, G:0.16, T:0.37
Consensus pattern (31 bp):
TTTCATATTTCATAACACTGGGCCGAAGCCT
Found at i:23990044 original size:24 final size:24
Alignment explanation
Indices: 23989986--23990103 Score: 161
Period size: 24 Copynumber: 5.0 Consensus size: 24
23989976 GCTTTATCAT
*
23989986 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
23990011 ATAACT-GGGCAAAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTA
23990034 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
23990057 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
23990081 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
23990104 TCATTTCCTC
Statistics
Matches: 84, Mismatches: 6, Indels: 7
0.87 0.06 0.07
Matches are distributed among these distances:
23 36 0.43
24 42 0.50
25 6 0.07
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:23990077 original size:47 final size:46
Alignment explanation
Indices: 23990007--23990102 Score: 156
Period size: 47 Copynumber: 2.1 Consensus size: 46
23989997 CCTAGCCTCT
23990007 TTTAATAACTGGGCAAAAGCCCTTTCAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGCAAAAGCCCTTTCAATAACTGGGGCATAAGCCC
* **
23990053 TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
1 TTTAATAACT-GGGCAAAAGCCCTTTCAATAACTGGGGCATAAGCCC
23990100 TTT
1 TTT
23990103 TTCATTTCCT
Statistics
Matches: 46, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
46 10 0.22
47 36 0.78
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.28
Consensus pattern (46 bp):
TTTAATAACTGGGCAAAAGCCCTTTCAATAACTGGGGCATAAGCCC
Found at i:23990179 original size:20 final size:20
Alignment explanation
Indices: 23990154--23990213 Score: 102
Period size: 20 Copynumber: 3.0 Consensus size: 20
23990144 TATGATTACC
23990154 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
* *
23990174 TCATGTGCATAGCATACATT
1 TCATGTGCATATCATACATA
23990194 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
23990214 CCATATTTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.33, C:0.20, G:0.12, T:0.35
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:23990288 original size:25 final size:25
Alignment explanation
Indices: 23990256--23990303 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
23990246 ATACATAAAC
* * *
23990256 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
23990281 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
23990304 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:23991583 original size:27 final size:27
Alignment explanation
Indices: 23991530--23992111 Score: 726
Period size: 27 Copynumber: 21.6 Consensus size: 27
23991520 GGGTATTTTA
* *
23991530 GTAATTTTGTAAATC-AGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
23991556 GTAATTCTGTAAATCAAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
23991583 GTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
23991610 GTAATTCTGTAAATCGAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACG
23991637 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* * * *
23991664 ATAATTATGTAAATCGGGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
23991691 GTAATTATGTAAAT-TAGGGGTAAAACG
1 GTAATTCTGTAAATCGA-GGGTAAAACG
* **
23991718 GTAATTCTATAAATCGAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
23991745 GTAATTCTATAAA-CTGAGGGTAAAACG
1 GTAATTCTGTAAATC-GAGGGTAAAACG
23991772 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* **
23991799 GTAATTTTACAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
23991826 GTAATTCTATAAATCGAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
23991853 GTAATTCTGTAAATCAAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
23991880 ATAATTCTGTAAA-CTGAGGGTAAAATG
1 GTAATTCTGTAAATC-GAGGGTAAAACG
**
23991907 GTAATTCTGTAAATCGAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACG
23991934 GTAATTCTGTAAA-CTGAGGGTAAAACG
1 GTAATTCTGTAAATC-GAGGGTAAAACG
*
23991961 ATAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* **
23991988 GTAATTTTACAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
23992015 GTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* ** *
23992042 GTAATTTTACAAATCGAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
23992069 GTAATTCTATAAA-CTGAGGGTAAAACG
1 GTAATTCTGTAAATC-GAGGGTAAAACG
*
23992096 GTAATTCTATAAATCG
1 GTAATTCTGTAAATCG
23992112 GGAGTACTTT
Statistics
Matches: 491, Mismatches: 54, Indels: 21
0.87 0.10 0.04
Matches are distributed among these distances:
26 18 0.04
27 468 0.95
28 5 0.01
ACGTcount: A:0.41, C:0.10, G:0.22, T:0.27
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAACG
Found at i:23994995 original size:30 final size:31
Alignment explanation
Indices: 23994955--23995017 Score: 101
Period size: 30 Copynumber: 2.1 Consensus size: 31
23994945 CCTTTTCATA
23994955 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
**
23994986 TTTCA-ATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
23995016 TT
1 TT
23995018 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
30 25 0.83
31 5 0.17
ACGTcount: A:0.24, C:0.24, G:0.16, T:0.37
Consensus pattern (31 bp):
TTTCATATTTCATAACACTGGGCCGAAGCCT
Found at i:23995260 original size:24 final size:24
Alignment explanation
Indices: 23995209--23995327 Score: 170
Period size: 24 Copynumber: 5.0 Consensus size: 24
23995199 GCTTTATCAT
*
23995209 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
23995234 ATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTA
23995258 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
23995281 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
23995305 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
23995328 TCACTTCCTC
Statistics
Matches: 86, Mismatches: 6, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
23 22 0.26
24 52 0.60
25 12 0.14
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.28
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:23995284 original size:47 final size:47
Alignment explanation
Indices: 23995230--23995326 Score: 167
Period size: 47 Copynumber: 2.1 Consensus size: 47
23995220 CCTAGCCTCT
23995230 TTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAAGCCC
* **
23995277 TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAAGCCC
23995324 TTT
1 TTT
23995327 TTCACTTCCT
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 47 1.00
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.28
Consensus pattern (47 bp):
TTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAAGCCC
Found at i:23995422 original size:19 final size:20
Alignment explanation
Indices: 23995378--23995436 Score: 102
Period size: 19 Copynumber: 3.0 Consensus size: 20
23995368 TATGATTACC
23995378 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
*
23995398 TCATGTGCATAGCATACAT-
1 TCATGTGCATATCATACATA
23995417 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
23995437 CCATATTTAT
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
19 18 0.50
20 18 0.50
ACGTcount: A:0.34, C:0.20, G:0.12, T:0.34
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:23995511 original size:25 final size:25
Alignment explanation
Indices: 23995479--23995526 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
23995469 ATACATAAAC
* * *
23995479 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
23995504 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
23995527 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:23996783 original size:27 final size:27
Alignment explanation
Indices: 23996754--23997335 Score: 735
Period size: 27 Copynumber: 21.6 Consensus size: 27
23996744 GGGTATTTTA
* * *
23996754 GTAATTTTGTAAATCAAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
23996781 GTAATTCTGTAAATCAAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
23996808 GTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
23996835 GTAATTCTGTAAATCGAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACG
23996862 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* * * *
23996889 ATAATTATGTAAATCGGGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
23996916 GTAATTATGTAAAT-TAGGGGTAAAACG
1 GTAATTCTGTAAATCGA-GGGTAAAACG
* **
23996943 GTAATTCTATAAATCGAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
23996970 GTAATTCTATAAA-CTGAGGGTAAAACG
1 GTAATTCTGTAAATC-GAGGGTAAAACG
23996997 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* **
23997024 GTAATTTTACAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
23997051 GTAATTCTATAAATCGAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
23997078 GTAATTCTGTAAATCAAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
23997105 ATAATTCTGTAAA-CTGAGGGTAAAACG
1 GTAATTCTGTAAATC-GAGGGTAAAACG
**
23997132 GTAATTCTGTAAATCGAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACG
23997159 GTAATTCTGTAAA-CTGAGGGTAAAACG
1 GTAATTCTGTAAATC-GAGGGTAAAACG
*
23997186 ATAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
**
23997213 GTAATT-TACAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
23997239 GTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* ** *
23997266 GTAATTTTACAAATCGAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
23997293 GTAATTCTATAAA-CTGAGGGTAAAACG
1 GTAATTCTGTAAATC-GAGGGTAAAACG
*
23997320 GTAATTCTATAAATCG
1 GTAATTCTGTAAATCG
23997336 GGAGTACTTT
Statistics
Matches: 492, Mismatches: 52, Indels: 22
0.87 0.09 0.04
Matches are distributed among these distances:
26 28 0.06
27 459 0.93
28 5 0.01
ACGTcount: A:0.41, C:0.10, G:0.22, T:0.27
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAACG
Found at i:23998487 original size:14 final size:14
Alignment explanation
Indices: 23998462--23998501 Score: 64
Period size: 14 Copynumber: 2.9 Consensus size: 14
23998452 TTAGTACTTT
23998462 AATTAA-TGATTAA
1 AATTAATTGATTAA
23998475 AATTAATTGATTAA
1 AATTAATTGATTAA
*
23998489 AATTAATTAATTA
1 AATTAATTGATTA
23998502 TGGATGAACG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
13 6 0.24
14 19 0.76
ACGTcount: A:0.53, C:0.00, G:0.05, T:0.42
Consensus pattern (14 bp):
AATTAATTGATTAA
Found at i:24004187 original size:40 final size:40
Alignment explanation
Indices: 24004079--24004288 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
24004069 CGGGATTTAA
* * * * *
24004079 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
24004119 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
24004159 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
24004199 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
24004239 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
24004279 CCGGATATAT
1 CCGGATATAT
24004289 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:24012322 original size:40 final size:40
Alignment explanation
Indices: 24012214--24012423 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
24012204 CGGGATTTAA
* * * * *
24012214 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
24012254 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
24012294 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
24012334 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
24012374 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
24012414 CCGGATATAT
1 CCGGATATAT
24012424 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:24014554 original size:40 final size:40
Alignment explanation
Indices: 24014432--24014576 Score: 152
Period size: 40 Copynumber: 3.6 Consensus size: 40
24014422 CGTGCACGAA
*
24014432 TGCCTTCGGGTCTTAGCCCGGATAGAATGTACTC-GCACGAA-
1 TGCCTTCGGGTCTTAGCCCGGATATAAT-TAC-CAGCAC-AAT
* *** *
24014473 TGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAAT
1 TGCCTTCGGGTCTTAGCCCGGATATAATTACCAGCACAAT
* * *
24014513 TGCCTTCGGGTCTTAACCCGGATATAATTTCCAGCATAAT
1 TGCCTTCGGGTCTTAGCCCGGATATAATTACCAGCACAAT
*
24014553 TGTCTTCGGG-CTTAGCCCGGATAT
1 TGCCTTCGGGTCTTAGCCCGGATAT
24014577 CATTCAATTT
Statistics
Matches: 86, Mismatches: 16, Indels: 6
0.80 0.15 0.06
Matches are distributed among these distances:
39 15 0.17
40 47 0.55
41 24 0.28
ACGTcount: A:0.21, C:0.27, G:0.24, T:0.28
Consensus pattern (40 bp):
TGCCTTCGGGTCTTAGCCCGGATATAATTACCAGCACAAT
Found at i:24022508 original size:40 final size:40
Alignment explanation
Indices: 24022463--24022592 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
24022453 CGGAATACAA
24022463 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* ** *
24022503 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
24022543 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
24022583 CCGGATATAA
1 CCGGATATAA
24022593 TTTCCAGCAT
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 3 0.04
40 73 0.96
ACGTcount: A:0.24, C:0.28, G:0.25, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:24022607 original size:40 final size:40
Alignment explanation
Indices: 24022463--24022626 Score: 145
Period size: 40 Copynumber: 4.1 Consensus size: 40
24022453 CGGAATACAA
* **
24022463 CCGGATATAACCACGTGCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCACCAGCAC-AATTGCCTTCGGGTCTTAGC
* *
24022503 CCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-CAGCAC-AATTGCCTTCGGGTCTTAGC
* ** * *
24022543 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
** * * *
24022583 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
24022623 CCGG
1 CCGG
24022627 GTATCATTCA
Statistics
Matches: 100, Mismatches: 21, Indels: 6
0.79 0.17 0.05
Matches are distributed among these distances:
39 2 0.02
40 98 0.98
ACGTcount: A:0.22, C:0.28, G:0.25, T:0.25
Consensus pattern (40 bp):
CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
Found at i:24033320 original size:27 final size:27
Alignment explanation
Indices: 24033265--24033327 Score: 67
Period size: 28 Copynumber: 2.3 Consensus size: 27
24033255 AATTTTGGTT
* *
24033265 TAATT-AATTTATAAAATAAAAAATTA
1 TAATTAAATTAATAAAATAAAAAATCA
*
24033291 TAATTAAATTAATAAAGGTAAAAAA-CA
1 TAATTAAATTAATAAA-ATAAAAAATCA
24033318 TAAATTAAAT
1 T-AATTAAAT
24033328 GTGAAAGTGG
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
26 5 0.16
27 11 0.35
28 15 0.48
ACGTcount: A:0.62, C:0.02, G:0.03, T:0.33
Consensus pattern (27 bp):
TAATTAAATTAATAAAATAAAAAATCA
Found at i:24034672 original size:2 final size:2
Alignment explanation
Indices: 24034667--24034715 Score: 71
Period size: 2 Copynumber: 24.5 Consensus size: 2
24034657 TATATATATA
* * *
24034667 TG TG TG TG TG TG TG TG TG TG TA TG TG TT TG TG TA TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
24034709 TG TG TG T
1 TG TG TG T
24034716 ATAAGTGATG
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.04, C:0.00, G:0.43, T:0.53
Consensus pattern (2 bp):
TG
Found at i:24036260 original size:40 final size:39
Alignment explanation
Indices: 24036215--24036341 Score: 130
Period size: 40 Copynumber: 3.2 Consensus size: 39
24036205 CGGAATATAA
24036215 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAT-TGCACAAATGCCTTCGGGTCTTAGC
* * * *
24036255 CCGGATAGAATGTC-TCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA--CCATTGCACAAATGCCTTCGGGTCTTAGC
* * * * *
24036295 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCA-TTGCACAAATGCCTTCGGGTCTTAGC
24036335 CCGGATA
1 CCGGATA
24036342 AATTTCCAGC
Statistics
Matches: 70, Mismatches: 13, Indels: 8
0.77 0.14 0.09
Matches are distributed among these distances:
38 1 0.01
40 67 0.96
41 1 0.01
42 1 0.01
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.24
Consensus pattern (39 bp):
CCGGATATAACCATTGCACAAATGCCTTCGGGTCTTAGC
Found at i:24044270 original size:40 final size:39
Alignment explanation
Indices: 24044225--24044351 Score: 130
Period size: 40 Copynumber: 3.2 Consensus size: 39
24044215 CGGAATATAA
24044225 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAT-TGCACAAATGCCTTCGGGTCTTAGC
* * * *
24044265 CCGGATAGAATGTC-TCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA--CCATTGCACAAATGCCTTCGGGTCTTAGC
* * * * *
24044305 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCA-TTGCACAAATGCCTTCGGGTCTTAGC
24044345 CCGGATA
1 CCGGATA
24044352 AATTTCCAGC
Statistics
Matches: 70, Mismatches: 13, Indels: 8
0.77 0.14 0.09
Matches are distributed among these distances:
38 1 0.01
40 67 0.96
41 1 0.01
42 1 0.01
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.24
Consensus pattern (39 bp):
CCGGATATAACCATTGCACAAATGCCTTCGGGTCTTAGC
Found at i:24054427 original size:40 final size:39
Alignment explanation
Indices: 24054382--24054589 Score: 202
Period size: 40 Copynumber: 5.2 Consensus size: 39
24054372 CGGAATACAA
*
24054382 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
24054422 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
24054462 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* *** *
24054502 CCGGATGTGGTCACTAGCAC-AATGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAAT-GCCTTCGGGTCTTAGC
** * * *
24054542 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
24054582 CCGGATAT
1 CCGGATAT
24054590 CATTCAATTG
Statistics
Matches: 141, Mismatches: 24, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
39 4 0.03
40 134 0.95
41 3 0.02
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:24054522 original size:80 final size:80
Alignment explanation
Indices: 24054382--24054588 Score: 238
Period size: 80 Copynumber: 2.6 Consensus size: 80
24054372 CGGAATACAA
* * *
24054382 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTTGCACAAAT-
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCAC-AATG
*
24054446 GCCTTCGGGTATTAGC
65 GCCTTCGGGTATTAAC
* * **
24054462 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTGGTC-ACTAGCACAATG
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-AGAACGACTAGCACAATG
*
24054526 GCCTTCGGGTCTTAAC
65 GCCTTCGGGTATTAAC
** * ** * *
24054542 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGATA
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATA
24054589 TCATTCAATT
Statistics
Matches: 107, Mismatches: 18, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
79 3 0.03
80 102 0.95
81 2 0.02
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (80 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCACAATGG
CCTTCGGGTATTAAC
Found at i:24061681 original size:40 final size:39
Alignment explanation
Indices: 24061636--24061843 Score: 202
Period size: 40 Copynumber: 5.2 Consensus size: 39
24061626 CGGAATACAA
*
24061636 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
24061676 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
24061716 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* *** *
24061756 CCGGATGTGGTCACTAGCAC-AATGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAAT-GCCTTCGGGTCTTAGC
** * * *
24061796 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
24061836 CCGGATAT
1 CCGGATAT
24061844 CATTCAATTG
Statistics
Matches: 141, Mismatches: 24, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
39 4 0.03
40 134 0.95
41 3 0.02
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:24061776 original size:80 final size:80
Alignment explanation
Indices: 24061636--24061842 Score: 238
Period size: 80 Copynumber: 2.6 Consensus size: 80
24061626 CGGAATACAA
* * *
24061636 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTTGCACAAAT-
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCAC-AATG
*
24061700 GCCTTCGGGTATTAGC
65 GCCTTCGGGTATTAAC
* * **
24061716 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTGGTC-ACTAGCACAATG
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-AGAACGACTAGCACAATG
*
24061780 GCCTTCGGGTCTTAAC
65 GCCTTCGGGTATTAAC
** * ** * *
24061796 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGATA
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATA
24061843 TCATTCAATT
Statistics
Matches: 107, Mismatches: 18, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
79 3 0.03
80 102 0.95
81 2 0.02
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (80 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCACAATGG
CCTTCGGGTATTAAC
Found at i:24069534 original size:37 final size:37
Alignment explanation
Indices: 24069490--24069572 Score: 130
Period size: 37 Copynumber: 2.2 Consensus size: 37
24069480 GGCTTAAAGA
*
24069490 CCCGCAGGCTTCGTGCTGGTAAAATATCGGGTTAAAT
1 CCCGCAGGCTTCGTGCTGGTAAAATATCGGGATAAAT
**
24069527 CCCGCAGGCTTCGTGCTGGTATTATATCGGGATAAAT
1 CCCGCAGGCTTCGTGCTGGTAAAATATCGGGATAAAT
*
24069564 CCCGTAGGC
1 CCCGCAGGC
24069573 CAGTGCTGTA
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 42 1.00
ACGTcount: A:0.22, C:0.24, G:0.28, T:0.27
Consensus pattern (37 bp):
CCCGCAGGCTTCGTGCTGGTAAAATATCGGGATAAAT
Found at i:24069593 original size:36 final size:36
Alignment explanation
Indices: 24069490--24069593 Score: 122
Period size: 37 Copynumber: 2.8 Consensus size: 36
24069480 GGCTTAAAGA
** *
24069490 CCCGCAGGCTTCGTGCTGGTAAAATATCGGGTTAAAT
1 CCCGCAGGC-TCGTGCTGGTATTATATCGGGATAAAT
24069527 CCCGCAGGCTTCGTGCTGGTATTATATCGGGATAAAT
1 CCCGCAGGC-TCGTGCTGGTATTATATCGGGATAAAT
*
24069564 CCCGTAGGC-CAGTGCT-GTATTATATTCGGG
1 CCCGCAGGCTC-GTGCTGGTATTATA-TCGGG
24069594 CCTTCGTGCC
Statistics
Matches: 61, Mismatches: 4, Indels: 5
0.87 0.06 0.07
Matches are distributed among these distances:
35 9 0.15
36 10 0.16
37 42 0.69
ACGTcount: A:0.21, C:0.22, G:0.28, T:0.29
Consensus pattern (36 bp):
CCCGCAGGCTCGTGCTGGTATTATATCGGGATAAAT
Found at i:24069761 original size:41 final size:43
Alignment explanation
Indices: 24069586--24069817 Score: 383
Period size: 41 Copynumber: 5.6 Consensus size: 43
24069576 TGCTGTATTA
24069586 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
24069629 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGT-ATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
*
24069671 TATTC---CCTTCGTGCCTAGTAGGCTTCGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
24069711 TA-TCGGGCCTTCGTGCCTAGCAGGCTTCGTGCC-GTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
24069752 TATTC-GGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
*
24069794 TATT--GGCCTTCATGCCTAGCAGGC
1 TATTCGGGCCTTCGTGCCTAGCAGGC
24069818 GTAATGCGGT
Statistics
Matches: 180, Mismatches: 3, Indels: 14
0.91 0.02 0.07
Matches are distributed among these distances:
39 30 0.17
40 7 0.04
41 57 0.32
42 49 0.27
43 37 0.21
ACGTcount: A:0.10, C:0.26, G:0.32, T:0.31
Consensus pattern (43 bp):
TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
Found at i:24074054 original size:2 final size:2
Alignment explanation
Indices: 24074047--24074075 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
24074037 GTGAAAGTTG
24074047 AT AT AT AT AT AT AT AT AT AT AT AT -T AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
24074076 TTTGAAAGTG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 25 0.96
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
AT
Found at i:24075100 original size:38 final size:38
Alignment explanation
Indices: 24075034--24075145 Score: 127
Period size: 38 Copynumber: 2.9 Consensus size: 38
24075024 ATTTGATGTG
*
24075034 TATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGTAAAA
1 TATCCGGG-TTAAA-TCCCGCAGGCTTCGTGCTGGTAAAA
* **
24075074 TATCCGGGTTAAATCCCGTAGGCTTCGTGCTGGTATTA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAAAA
* * * *
24075112 TATCAGGGATAAATCCCGCA-GCCTAGTGCTGGTA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTA
24075146 TTATATTCGG
Statistics
Matches: 63, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
37 12 0.19
38 38 0.60
39 5 0.08
40 8 0.13
ACGTcount: A:0.23, C:0.23, G:0.27, T:0.27
Consensus pattern (38 bp):
TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAAAA
Found at i:24075215 original size:43 final size:43
Alignment explanation
Indices: 24075149--24075252 Score: 190
Period size: 43 Copynumber: 2.4 Consensus size: 43
24075139 GCTGGTATTA
*
24075149 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGTCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
*
24075192 TATTTGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
24075235 TATTCGGGCCTTCGTGCC
1 TATTCGGGCCTTCGTGCC
24075253 GGTGATGTGT
Statistics
Matches: 58, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 58 1.00
ACGTcount: A:0.09, C:0.25, G:0.34, T:0.33
Consensus pattern (43 bp):
TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
Found at i:24075255 original size:27 final size:27
Alignment explanation
Indices: 24075217--24075279 Score: 117
Period size: 27 Copynumber: 2.3 Consensus size: 27
24075207 GCCTAGCAGG
*
24075217 CTTCGTGCCGGTGATGTGTATTCGGGC
1 CTTCGTGCCGGTGATGTGTACTCGGGC
24075244 CTTCGTGCCGGTGATGTGTACTCGGGC
1 CTTCGTGCCGGTGATGTGTACTCGGGC
24075271 CTTCGTGCC
1 CTTCGTGCC
24075280 TAGCAGGCTT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 35 1.00
ACGTcount: A:0.06, C:0.27, G:0.35, T:0.32
Consensus pattern (27 bp):
CTTCGTGCCGGTGATGTGTACTCGGGC
Found at i:24075262 original size:70 final size:70
Alignment explanation
Indices: 24075174--24075322 Score: 262
Period size: 70 Copynumber: 2.1 Consensus size: 70
24075164 GCCTAGCAGG
* * *
24075174 CTTCGTGTCGGTGATGTGTATTTGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTGTATT
1 CTTCGTGCCGGTGATGTGTACTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTGTATT
24075239 CGGGC
66 CGGGC
*
24075244 CTTCGTGCCGGTGATGTGTACTCGGGCCTTCGTGCCTAGCAGGCTTTGTGCCGGTGATGTGTATT
1 CTTCGTGCCGGTGATGTGTACTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTGTATT
24075309 CGGGC
66 CGGGC
24075314 CTTCGTGCC
1 CTTCGTGCC
24075323 TAGCAGGCTT
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
70 75 1.00
ACGTcount: A:0.08, C:0.24, G:0.35, T:0.33
Consensus pattern (70 bp):
CTTCGTGCCGGTGATGTGTACTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTGTATT
CGGGC
Found at i:24075312 original size:43 final size:43
Alignment explanation
Indices: 24075244--24075373 Score: 224
Period size: 43 Copynumber: 3.0 Consensus size: 43
24075234 GTATTCGGGC
*
24075244 CTTCGTGCCGGTGATGTGTACTCGGGCCTTCGTGCCTAGCAGG
1 CTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGG
*
24075287 CTTTGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGG
1 CTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGG
* *
24075330 CTTCGTGCCGATGATGTGTATTCGGGCCTTCATGCCTAGCAGG
1 CTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGG
24075373 C
1 C
24075374 GTAATGCCGG
Statistics
Matches: 82, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
43 82 1.00
ACGTcount: A:0.11, C:0.26, G:0.33, T:0.30
Consensus pattern (43 bp):
CTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGG
Found at i:24075350 original size:113 final size:113
Alignment explanation
Indices: 24075152--24075365 Score: 383
Period size: 113 Copynumber: 1.9 Consensus size: 113
24075142 GGTATTATAT
* *
24075152 TCGGGCCTTCGTGCCTAGCAGGCTTCGTGTCGGTGATGTGTATTTGGGCCTTCGTGCCTAGCAGG
1 TCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGG
* *
24075217 CTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCGGTGATGTGTAC
66 CTTCGTGCCGATGATGTGTATTCGGGCCTTCATGCCGGTGATGTGTAC
*
24075265 TCGGGCCTTCGTGCCTAGCAGGCTTTGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGG
1 TCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGG
24075330 CTTCGTGCCGATGATGTGTATTCGGGCCTTCATGCC
66 CTTCGTGCCGATGATGTGTATTCGGGCCTTCATGCC
24075366 TAGCAGGCGT
Statistics
Matches: 96, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
113 96 1.00
ACGTcount: A:0.09, C:0.25, G:0.34, T:0.31
Consensus pattern (113 bp):
TCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGG
CTTCGTGCCGATGATGTGTATTCGGGCCTTCATGCCGGTGATGTGTAC
Found at i:24078988 original size:40 final size:40
Alignment explanation
Indices: 24078951--24079176 Score: 314
Period size: 40 Copynumber: 5.7 Consensus size: 40
24078941 GCTACTCGTT
* *
24078951 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
24078991 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
*
24079031 CATATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
24079071 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* ** * * *
24079111 CAAATACCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
24079152 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
24079177 CATCATTCGA
Statistics
Matches: 170, Mismatches: 12, Indels: 8
0.89 0.06 0.04
Matches are distributed among these distances:
39 3 0.02
40 154 0.91
41 13 0.08
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:24081039 original size:54 final size:54
Alignment explanation
Indices: 24080844--24081050 Score: 249
Period size: 55 Copynumber: 3.9 Consensus size: 54
24080834 TTTTCTTTTT
* * * * *
24080844 GAACTCACCATTGTCATGTCTTGACATGGTCTTACATGGTATCCTT-CCTTAT-
1 GAACTCATCAATGCCATGCCTTGACATGGTCTTACATGATATCCTTGCCTTATA
* * **
24080896 GAACTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATA
1 GAACTCATCAATGCCATGCCTTGACATGGTCTTACATGATATCC-TTGCCTTATA
** *
24080950 GTAACTCATCAATGCCATGTATTGACATGGTCTTACATGATTTCCTTGCCTTATA
1 G-AACTCATCAATGCCATGCCTTGACATGGTCTTACATGATATCCTTGCCTTATA
* *
24081005 GAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATATCCTT
1 GAACTCATCAATGCCATGCCTTGACATGGTCTTACATGATATCCTT
24081051 ATCTTACCAA
Statistics
Matches: 133, Mismatches: 17, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
51 2 0.02
52 38 0.29
53 6 0.05
54 41 0.31
55 44 0.33
56 2 0.02
ACGTcount: A:0.23, C:0.25, G:0.17, T:0.35
Consensus pattern (54 bp):
GAACTCATCAATGCCATGCCTTGACATGGTCTTACATGATATCCTTGCCTTATA
Found at i:24081084 original size:47 final size:47
Alignment explanation
Indices: 24081029--24081150 Score: 217
Period size: 47 Copynumber: 2.6 Consensus size: 47
24081019 CATGCCTTGG
* *
24081029 CATGGTCTTACATGATATCCTTATCTTACCAAATGCCATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
24081076 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
*
24081123 CATGTTCTTACATGGTATCCTTGTCTTA
1 CATGGTCTTACATGGTATCCTTGTCTTA
24081151 GTGCCAATGC
Statistics
Matches: 72, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 72 1.00
ACGTcount: A:0.25, C:0.25, G:0.13, T:0.37
Consensus pattern (47 bp):
CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
Found at i:24087662 original size:55 final size:53
Alignment explanation
Indices: 24087537--24087725 Score: 211
Period size: 55 Copynumber: 3.5 Consensus size: 53
24087527 AACTTACCAT
* *
24087537 TGCCATGTCTTGACATGGTTTTACGTGGTATCCTTGCCTTAT-GAACTCA-CTAA
1 TGCCATGCCTTGACATGGTTTTACATGGTA-CCTTGCCTTATAGAACTCATC-AA
* * * *
24087590 TGCCTTGCCTTGGCATGGTATTACATGGGACCTTTGCCTTATAGTAACTCATCAA
1 TGCCATGCCTTGACATGGTTTTACATGGTACC-TTGCCTTATAG-AACTCATCAA
* * * * *
24087645 TGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTATAGAACTTATCAA
1 TGCCATGCCTTGACATGGTTTTACATG-GTACCTTGCCTTATAGAACTCATCAA
*
24087699 TGCCATGCCTTGGCATGGTTTTACATG
1 TGCCATGCCTTGACATGGTTTTACATG
24087726 ATATCCTTAT
Statistics
Matches: 114, Mismatches: 17, Indels: 9
0.81 0.12 0.06
Matches are distributed among these distances:
52 2 0.02
53 33 0.29
54 34 0.30
55 42 0.37
56 3 0.03
ACGTcount: A:0.21, C:0.23, G:0.19, T:0.37
Consensus pattern (53 bp):
TGCCATGCCTTGACATGGTTTTACATGGTACCTTGCCTTATAGAACTCATCAA
Found at i:24087770 original size:47 final size:47
Alignment explanation
Indices: 24087712--24087833 Score: 190
Period size: 47 Copynumber: 2.6 Consensus size: 47
24087702 CATGCCTTGG
* * * *
24087712 CATGGTTTTACATGATATCCTTATCTTACCAAATGCCATGTTCTAAA
1 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
* *
24087759 CATGGTCTTACATGGCATCCTTGTGTTACCAAATGCCATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
24087806 CATGGTCTTACATGGTATCCTTGTCTTA
1 CATGGTCTTACATGGTATCCTTGTCTTA
24087834 GTGCCAATGC
Statistics
Matches: 67, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
47 67 1.00
ACGTcount: A:0.25, C:0.23, G:0.15, T:0.37
Consensus pattern (47 bp):
CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
Found at i:24091023 original size:46 final size:46
Alignment explanation
Indices: 24090973--24091141 Score: 175
Period size: 46 Copynumber: 3.7 Consensus size: 46
24090963 TGGTTGAGCA
* *
24090973 TCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * * *
24091019 TCCGAACTCGTTGAGTTGAGTTCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* *
24091066 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
24091112 CCCGAGCTCGTTGAGTT-AGTCCGAGTTCAC
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCAC
24091142 ATAGGGGCGG
Statistics
Matches: 100, Mismatches: 16, Indels: 15
0.76 0.12 0.11
Matches are distributed among these distances:
43 6 0.06
45 15 0.15
46 43 0.43
47 28 0.28
48 3 0.03
50 5 0.05
ACGTcount: A:0.22, C:0.21, G:0.27, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:24091406 original size:19 final size:20
Alignment explanation
Indices: 24091369--24091406 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
24091359 ATAAGGTGGT
24091369 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
24091389 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
24091407 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:24096600 original size:30 final size:30
Alignment explanation
Indices: 24096565--24096624 Score: 120
Period size: 30 Copynumber: 2.0 Consensus size: 30
24096555 GATAAGGCCT
24096565 AATGGCCGATGTGATGAATGTGAAAGTGTG
1 AATGGCCGATGTGATGAATGTGAAAGTGTG
24096595 AATGGCCGATGTGATGAATGTGAAAGTGTG
1 AATGGCCGATGTGATGAATGTGAAAGTGTG
24096625 TATATATGTG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.30, C:0.07, G:0.37, T:0.27
Consensus pattern (30 bp):
AATGGCCGATGTGATGAATGTGAAAGTGTG
Found at i:24096614 original size:16 final size:16
Alignment explanation
Indices: 24096565--24096614 Score: 52
Period size: 16 Copynumber: 3.2 Consensus size: 16
24096555 GATAAGGCCT
24096565 AATGGCCGATGTGATG
1 AATGGCCGATGTGATG
* *
24096581 AATGTG--AAAGTG-TG
1 AATG-GCCGATGTGATG
24096595 AATGGCCGATGTGATG
1 AATGGCCGATGTGATG
24096611 AATG
1 AATG
24096615 TGAAAGTGTG
Statistics
Matches: 26, Mismatches: 4, Indels: 8
0.68 0.11 0.21
Matches are distributed among these distances:
13 1 0.04
14 6 0.23
15 8 0.31
16 10 0.38
17 1 0.04
ACGTcount: A:0.30, C:0.08, G:0.36, T:0.26
Consensus pattern (16 bp):
AATGGCCGATGTGATG
Found at i:24096650 original size:49 final size:49
Alignment explanation
Indices: 24096595--24096960 Score: 673
Period size: 49 Copynumber: 7.5 Consensus size: 49
24096585 TGAAAGTGTG
24096595 AATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGGCCT
1 AATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGGCCT
24096644 AATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGGCCT
1 AATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGGCCT
*
24096693 AATGGCCGATGTGATGAATGAGAAAGTGTGTATATATGTGATAAGGCCT
1 AATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGGCCT
* *
24096742 AATGGCCGATGTGATGAATGAGAAAGTGTGTATATCTGTGATAAGGCCT
1 AATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGGCCT
*
24096791 AATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCT
1 AATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGGCCT
*
24096840 AATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCT
1 AATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGGCCT
24096889 AATGGCCGATGTGATGAATGTGAAA--GTGTATATATGTGATAAGGCCT
1 AATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGGCCT
24096936 AATGGCCGATGTGATGAATGTGAAA
1 AATGGCCGATGTGATGAATGTGAAA
24096961 TATATGTGTG
Statistics
Matches: 311, Mismatches: 6, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
47 46 0.15
49 265 0.85
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (49 bp):
AATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGGCCT
Found at i:24097101 original size:37 final size:37
Alignment explanation
Indices: 24097060--24097137 Score: 138
Period size: 37 Copynumber: 2.1 Consensus size: 37
24097050 GTTCCGGGTG
*
24097060 AGACCCGATGACTACGTGTGGAGATTATGTCCGGGCA
1 AGACCCGATGACTAAGTGTGGAGATTATGTCCGGGCA
*
24097097 AGACCCGATGACTAAGTGTGGAGATTATGTCCGGGTA
1 AGACCCGATGACTAAGTGTGGAGATTATGTCCGGGCA
24097134 AGAC
1 AGAC
24097138 TTCATAATAA
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 39 1.00
ACGTcount: A:0.27, C:0.19, G:0.32, T:0.22
Consensus pattern (37 bp):
AGACCCGATGACTAAGTGTGGAGATTATGTCCGGGCA
Found at i:24106650 original size:16 final size:18
Alignment explanation
Indices: 24106629--24106666 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
24106619 TAGTCTCTAG
*
24106629 CAGTTT-ACTATAG-TTT
1 CAGTTTAACTACAGTTTT
24106645 CAGTTTAACTACAGTTTT
1 CAGTTTAACTACAGTTTT
24106663 CAGT
1 CAGT
24106667 ATAAACTAAC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
16 6 0.32
17 6 0.32
18 7 0.37
ACGTcount: A:0.26, C:0.16, G:0.13, T:0.45
Consensus pattern (18 bp):
CAGTTTAACTACAGTTTT
Found at i:24108785 original size:23 final size:23
Alignment explanation
Indices: 24108758--24108815 Score: 89
Period size: 23 Copynumber: 2.5 Consensus size: 23
24108748 ACATTTACCG
*
24108758 CTATTAGTAGCTTTGCTGTGTTA
1 CTATTAGTAGCTTTGCTGCGTTA
24108781 CTATTAGTAGCTTTGCTGCGTTA
1 CTATTAGTAGCTTTGCTGCGTTA
* *
24108804 TTATTAGCAGCT
1 CTATTAGTAGCT
24108816 ACGCTGCGAT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 32 1.00
ACGTcount: A:0.19, C:0.16, G:0.21, T:0.45
Consensus pattern (23 bp):
CTATTAGTAGCTTTGCTGCGTTA
Found at i:24108821 original size:23 final size:23
Alignment explanation
Indices: 24108772--24108828 Score: 60
Period size: 23 Copynumber: 2.5 Consensus size: 23
24108762 TAGTAGCTTT
* * * **
24108772 GCTGTGTTACTATTAGTAGCTTT
1 GCTGCGTTATTATTAGCAGCTAC
24108795 GCTGCGTTATTATTAGCAGCTAC
1 GCTGCGTTATTATTAGCAGCTAC
*
24108818 GCTGCGATATT
1 GCTGCGTTATT
24108829 GGTGAGTTGG
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 28 1.00
ACGTcount: A:0.19, C:0.18, G:0.23, T:0.40
Consensus pattern (23 bp):
GCTGCGTTATTATTAGCAGCTAC
Found at i:24116062 original size:13 final size:13
Alignment explanation
Indices: 24116046--24116070 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
24116036 TTAAATTAGT
24116046 TAATTAGTTTAAA
1 TAATTAGTTTAAA
24116059 TAATTAGTTTAA
1 TAATTAGTTTAA
24116071 TAAACAAACT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.00, G:0.08, T:0.48
Consensus pattern (13 bp):
TAATTAGTTTAAA
Found at i:24119960 original size:17 final size:17
Alignment explanation
Indices: 24119938--24119976 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 17
24119928 AATCATACAT
* *
24119938 TTCAAAATCAATAATCA
1 TTCAAAATCAAAAACCA
24119955 TTC-AAATCAAAAACCA
1 TTCAAAATCAAAAACCA
24119971 TTCAAA
1 TTCAAA
24119977 TACTTTCATA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
16 14 0.74
17 5 0.26
ACGTcount: A:0.54, C:0.21, G:0.00, T:0.26
Consensus pattern (17 bp):
TTCAAAATCAAAAACCA
Found at i:24119963 original size:16 final size:16
Alignment explanation
Indices: 24119942--24119977 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
24119932 ATACATTTCA
* *
24119942 AAATCAATAATCATTC
1 AAATCAAAAACCATTC
24119958 AAATCAAAAACCATTC
1 AAATCAAAAACCATTC
24119974 AAAT
1 AAAT
24119978 ACTTTCATAC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.56, C:0.19, G:0.00, T:0.25
Consensus pattern (16 bp):
AAATCAAAAACCATTC
Found at i:24124667 original size:39 final size:38
Alignment explanation
Indices: 24124586--24124751 Score: 174
Period size: 40 Copynumber: 4.2 Consensus size: 38
24124576 AAATTGAATG
* * *
24124586 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTG-GAAATT
1 ATATCCGGGCTAAGACCCGAAGGC-ATTGTGCAGTG--ATT
* * *
24124625 ATATCCGGGTTAAGACCCGAAGGCAATGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTGTGC-AGTGATT
*
24124664 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCATT-GTGC-AGTGATT
*
24124704 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCA-TTGTGCA-GTGATT
24124744 ATATCCGG
1 ATATCCGG
24124752 TTATATTCCG
Statistics
Matches: 107, Mismatches: 14, Indels: 11
0.81 0.11 0.08
Matches are distributed among these distances:
39 46 0.43
40 58 0.54
41 3 0.03
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.24
Consensus pattern (38 bp):
ATATCCGGGCTAAGACCCGAAGGCATTGTGCAGTGATT
Found at i:24129506 original size:2 final size:2
Alignment explanation
Indices: 24129493--24129527 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
24129483 ATGAACCATA
*
24129493 AT AT AC AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
24129528 CAAAATGACC
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (2 bp):
AT
Found at i:24130258 original size:3 final size:3
Alignment explanation
Indices: 24130250--24130300 Score: 88
Period size: 3 Copynumber: 17.7 Consensus size: 3
24130240 TTAATATTAA
24130250 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A-T ATT A-T
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
24130296 ATT AT
1 ATT AT
24130301 GAAATAAGTT
Statistics
Matches: 46, Mismatches: 0, Indels: 4
0.92 0.00 0.08
Matches are distributed among these distances:
2 4 0.09
3 42 0.91
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:24133981 original size:40 final size:40
Alignment explanation
Indices: 24133744--24133967 Score: 242
Period size: 40 Copynumber: 5.6 Consensus size: 40
24133734 CGAATGATGT
* * ** *
24133744 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGCGACTATAT
1 CCGGGCTATGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
24133784 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-ATT
1 CCGGGCTATG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
* * *
24133824 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTCACTA-AA
1 CCGGGCTATGTCCCGAAGGCATTTGTGCGAGTTACTATAA
* * *
24133862 TCTGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTATGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
24133903 CCGGGCTATGTCCCGAAGGCATTTGTGCTAGTTACTATAA
1 CCGGGCTATGTCCCGAAGGCATTTGTGCGAGTTACTATAA
24133943 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTATGTCCCGAAGGCATTTG
24133968 AACGAGTAGC
Statistics
Matches: 161, Mismatches: 16, Indels: 14
0.84 0.08 0.07
Matches are distributed among these distances:
39 33 0.20
40 118 0.73
41 10 0.06
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTATGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:24133981 original size:80 final size:80
Alignment explanation
Indices: 24133743--24133986 Score: 277
Period size: 80 Copynumber: 3.1 Consensus size: 80
24133733 TCGAATGATG
* *
24133743 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAG-CGACTATATCCGGACTAAGAT-CCGAAGGCA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGTC-ACTATAACCGGGCTAAG-TCCCGAAGGCA
24133805 TTTGTGCGAGTTACTA-A
63 TTTGTGCGAGTTACTATA
* * * *
24133822 TTCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTCACTA-AATCTGGGTTAAGTCCCGAAGGCAT
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTCACTATAA-CCGGGCTAAGTCCCGAAGGCAT
24133885 TTGTGCGAGTTACTATA
64 TTGTGCGAGTTACTATA
* * * *
24133902 ACCGGGCTATGTCCCGAAGGCATTTGTGCTAGTTACTATAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTCACTATAACCGGGCTAAGTCCCGAAGGCATTT
**
24133967 GAACGAG-TAGCTATA
66 GTGCGAGTTA-CTATA
24133982 TCCGG
1 TCCGG
24133987 TTAAATTCCA
Statistics
Matches: 139, Mismatches: 17, Indels: 16
0.81 0.10 0.09
Matches are distributed among these distances:
78 2 0.01
79 58 0.42
80 77 0.55
81 2 0.01
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTCACTATAACCGGGCTAAGTCCCGAAGGCATTT
GTGCGAGTTACTATA
Found at i:24133989 original size:119 final size:119
Alignment explanation
Indices: 24133750--24133990 Score: 276
Period size: 119 Copynumber: 2.0 Consensus size: 119
24133740 ATGTCCGGGC
*
24133750 TAAGTCCCGAAGGCTTTGTGCTAAGCGACTATATCCGGACTAAGATCCGAAGGCATTTGTGCGAG
1 TAAGTCCCGAAGGCTTTGTGCTAAGCGACTATAACCGGACTAAGATCCGAAGGCATTTGTGCGAG
* ** *
24133815 TTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTCACTAAATCTGGGT
66 TTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTCACTAAATCTCGGT
* ** * * *
24133869 TAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAACCGGGCTATG-TCCCGAAGGCATTTGTGCT
1 TAAGTCCCGAAGGC-TTTGTGCTAAGCGACTATAACCGGACTAAGAT-CCGAAGGCATTTGTGCG
* * *
24133932 AGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAGT-AGCTATATC-CGGT
64 AGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTCA-CTAAATCTCGGT
24133988 TAA
1 TAA
24133991 ATTCCAAAGG
Statistics
Matches: 103, Mismatches: 14, Indels: 10
0.81 0.11 0.08
Matches are distributed among these distances:
118 3 0.03
119 69 0.67
120 31 0.30
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.27
Consensus pattern (119 bp):
TAAGTCCCGAAGGCTTTGTGCTAAGCGACTATAACCGGACTAAGATCCGAAGGCATTTGTGCGAG
TTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTCACTAAATCTCGGT
Found at i:24140302 original size:27 final size:27
Alignment explanation
Indices: 24140261--24140312 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 27
24140251 TTAACATCCT
*
24140261 GACCATTTAGATTATTATTAAGACCAG
1 GACCATTTAGATTATCATTAAGACCAG
* * *
24140288 GACCATTTGGGTTATCATTGAGACC
1 GACCATTTAGATTATCATTAAGACC
24140313 GGGATTATTC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 21 1.00
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.33
Consensus pattern (27 bp):
GACCATTTAGATTATCATTAAGACCAG
Found at i:24140699 original size:11 final size:11
Alignment explanation
Indices: 24140683--24140707 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
24140673 AAAATGCAAT
24140683 TAATGCTATGG
1 TAATGCTATGG
24140694 TAATGCTATGG
1 TAATGCTATGG
24140705 TAA
1 TAA
24140708 GTATTCAGTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.32, C:0.08, G:0.24, T:0.36
Consensus pattern (11 bp):
TAATGCTATGG
Found at i:24143994 original size:30 final size:30
Alignment explanation
Indices: 24143960--24144025 Score: 123
Period size: 30 Copynumber: 2.2 Consensus size: 30
24143950 TACCGGGAGT
*
24143960 AAAATTTTACTAGGGTAAAACTGGGTTGAA
1 AAAATTTTACTAGGGTAAAACTGGGGTGAA
24143990 AAAATTTTACTAGGGTAAAACTGGGGTGAA
1 AAAATTTTACTAGGGTAAAACTGGGGTGAA
24144020 AAAATT
1 AAAATT
24144026 ATTTAATATG
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 35 1.00
ACGTcount: A:0.42, C:0.06, G:0.23, T:0.29
Consensus pattern (30 bp):
AAAATTTTACTAGGGTAAAACTGGGGTGAA
Found at i:24149608 original size:11 final size:10
Alignment explanation
Indices: 24149594--24149668 Score: 70
Period size: 10 Copynumber: 7.7 Consensus size: 10
24149584 TTTCCAAAAT
24149594 TTAAAAATTA
1 TTAAAAATTA
24149604 TTTAAAAATTA
1 -TTAAAAATTA
*
24149615 TTAAGAATTA
1 TTAAAAATTA
*
24149625 -TAATAAGTTA
1 TTAA-AAATTA
24149635 -TAAAAA-TA
1 TTAAAAATTA
24149643 TTTAAAAA--A
1 -TTAAAAATTA
24149652 TTAAAAATTA
1 TTAAAAATTA
24149662 TTAAAAA
1 TTAAAAA
24149669 CAACTAGAAT
Statistics
Matches: 55, Mismatches: 4, Indels: 11
0.79 0.06 0.16
Matches are distributed among these distances:
8 9 0.16
9 6 0.11
10 30 0.55
11 10 0.18
ACGTcount: A:0.60, C:0.00, G:0.03, T:0.37
Consensus pattern (10 bp):
TTAAAAATTA
Found at i:24149668 original size:18 final size:19
Alignment explanation
Indices: 24149589--24149668 Score: 67
Period size: 19 Copynumber: 4.2 Consensus size: 19
24149579 AAAAATTTCC
*
24149589 AAAATTTAAAAATTATTTA
1 AAAAATTAAAAATTATTTA
*
24149608 AAAATTATTAAGAATTA--TA
1 AAAA--ATTAAAAATTATTTA
* * *
24149627 ATAAGTTATAAAAATATTTA
1 AAAAATTA-AAAATTATTTA
24149647 AAAAATTAAAAATTA-TTA
1 AAAAATTAAAAATTATTTA
24149665 AAAA
1 AAAA
24149669 CAACTAGAAT
Statistics
Matches: 47, Mismatches: 9, Indels: 11
0.70 0.13 0.16
Matches are distributed among these distances:
17 3 0.06
18 12 0.26
19 15 0.32
20 8 0.17
21 9 0.19
ACGTcount: A:0.61, C:0.00, G:0.03, T:0.36
Consensus pattern (19 bp):
AAAAATTAAAAATTATTTA
Found at i:24149839 original size:18 final size:18
Alignment explanation
Indices: 24149813--24149849 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
24149803 AATAACTTTC
24149813 TATTAAGTTTTAGAAATT
1 TATTAAGTTTTAGAAATT
* *
24149831 TATTTAGTTTTAGGAATT
1 TATTAAGTTTTAGAAATT
24149849 T
1 T
24149850 TATATTTTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.32, C:0.00, G:0.14, T:0.54
Consensus pattern (18 bp):
TATTAAGTTTTAGAAATT
Found at i:24150186 original size:15 final size:16
Alignment explanation
Indices: 24150166--24150199 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
24150156 TATGTGATTG
24150166 TTTAAT-GGTGAATTT
1 TTTAATAGGTGAATTT
*
24150181 TTTAATAGGTGGATTT
1 TTTAATAGGTGAATTT
24150197 TTT
1 TTT
24150200 TTTAAGGTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.24, C:0.00, G:0.21, T:0.56
Consensus pattern (16 bp):
TTTAATAGGTGAATTT
Found at i:24150196 original size:16 final size:15
Alignment explanation
Indices: 24150161--24150199 Score: 51
Period size: 16 Copynumber: 2.5 Consensus size: 15
24150151 TATTTTATGT
*
24150161 GATTGTTTAATGGTG
1 GATTTTTTAATGGTG
*
24150176 AATTTTTTAATAGGTG
1 GATTTTTTAAT-GGTG
24150192 GATTTTTT
1 GATTTTTT
24150200 TTTAAGGTAA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
15 9 0.45
16 11 0.55
ACGTcount: A:0.23, C:0.00, G:0.23, T:0.54
Consensus pattern (15 bp):
GATTTTTTAATGGTG
Found at i:24150984 original size:12 final size:12
Alignment explanation
Indices: 24150967--24150992 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
24150957 TCATGCAATC
24150967 AAGCAGTGAAGT
1 AAGCAGTGAAGT
24150979 AAGCAGTGAAGT
1 AAGCAGTGAAGT
24150991 AA
1 AA
24150993 CGATCGGAGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.46, C:0.08, G:0.31, T:0.15
Consensus pattern (12 bp):
AAGCAGTGAAGT
Found at i:24157818 original size:55 final size:53
Alignment explanation
Indices: 24157689--24157878 Score: 164
Period size: 55 Copynumber: 3.5 Consensus size: 53
24157679 AACTTCCCAT
* * * *
24157689 TGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTATGAACTCATCAT
1 TGCCATGTCTTGACATGGTCTTACATGGGATACTTGCCTTATGAACTCATCAA
* * * * ** *
24157742 TGCCTTGCCTTGGCATGGTCTTACATGGGATATTTGCCTTATAGTAGTTTATCAA
1 TGCCATGTCTTGACATGGTCTTACATGGGATACTTGCCTTAT-G-AACTCATCAA
*** * * * * *
24157797 TGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTGTAAAACTTACCAA
1 TGCCATGTCTTGACATGGTCTTACATGGGATACTTGCCTTAT-GAACTCATCAA
* *
24157851 TGCCATGCCTTGGCATGGTCTTACATGG
1 TGCCATGTCTTGACATGGTCTTACATGG
24157879 TATCCTTAAA
Statistics
Matches: 108, Mismatches: 27, Indels: 3
0.78 0.20 0.02
Matches are distributed among these distances:
53 35 0.32
54 33 0.31
55 40 0.37
ACGTcount: A:0.20, C:0.23, G:0.20, T:0.37
Consensus pattern (53 bp):
TGCCATGTCTTGACATGGTCTTACATGGGATACTTGCCTTATGAACTCATCAA
Found at i:24183154 original size:44 final size:45
Alignment explanation
Indices: 24183078--24183617 Score: 381
Period size: 45 Copynumber: 12.0 Consensus size: 45
24183068 TTAACACATC
* * *
24183078 ATAGCGAA-TCTTATCTCCTTGAAGTTGTAGTGGAGAAGATTGAAG
1 ATAGC-AAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG
* * * * *
24183123 TTA-CAAGTCTTATCTCCCTAAAATTGCAGTGGAGCAGACTAAAG
1 ATAGCAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG
* *
24183167 ATAGCGAA-TCTTATTTCCCTGAAGTTGCAGTGGAACAGATTGAAG
1 ATAGC-AAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG
** * * *
24183212 TTATAAATAAATAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGA-T---C
1 --AT--A-GCA-AG-TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG
** * * * * *
24183260 ATAGCAAACCTTATCTCTCTAAAGTTGCAGTAGAGTAGGTTGAAG
1 ATAGCAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG
* *
24183305 -TAGCAAGTCTTATCTCCCTAAAGTTGCAGTGGAGCAGACTGAAG
1 ATAGCAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG
* ** * * * *
24183349 ATAGCAAGTCTTATCTCTCTGAAGTTTTAGTGCAACAGACTAAAG
1 ATAGCAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG
24183394 ATAGC-AGATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG
1 ATAGCAAG-TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG
** * * * * ** *
24183439 CCA-TAA-TCCTTATCTCTCTAAAGTTGCAGTAGAGCAGGA-AAAAA
1 ATAGCAAGT-CTTATCTCCCTGAAGTTGCAGTGGAGCA-GATTGAAG
* * *
24183483 ATATACAA-TCTTTATCTCCCTGAAGTTACAGTGGAGCAGGTTGAA-
1 ATA-GCAAGTC-TTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG
* *
24183528 ATAGCAAGTCTTACCTCCCTGAAGTTGCAGTGGAGCAGACTGAAG
1 ATAGCAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG
* * * * * *
24183573 ACAG-TAGATCTTATCTCCCTGAAATTACATTGGAGCAGATCGAAG
1 ATAGCAAG-TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG
24183618 CATCAATTCC
Statistics
Matches: 385, Mismatches: 83, Indels: 54
0.74 0.16 0.10
Matches are distributed among these distances:
41 27 0.07
42 2 0.01
43 4 0.01
44 136 0.35
45 151 0.39
46 32 0.08
47 2 0.01
49 2 0.01
50 1 0.00
51 1 0.00
52 27 0.07
ACGTcount: A:0.32, C:0.18, G:0.22, T:0.28
Consensus pattern (45 bp):
ATAGCAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG
Found at i:24183437 original size:134 final size:129
Alignment explanation
Indices: 24183130--24183617 Score: 346
Period size: 134 Copynumber: 3.6 Consensus size: 129
24183120 AAGTTACAAG
* * * *
24183130 TCTTATCTCCCTAAAATTGCAGTGGAGCAGACTAAAGATAGCGA-A-TCTTATTTCCCTGAAGTT
1 TCTTATCTCCCTAAAGTTGCAGTGGAGCAGACTGAAG--AGC-ATAGTCTTATCTCCCTAAAGTT
* * *
24183193 GCAGTGGAACAGATTGAAGTTATAAATAAATAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGA
63 GCAGTGGAGCAGA-TGAAG--AT--ATACA-AG-TCTTATCTCTCTGAAGTTACAGT-GAGCAGA
*
24183258 T-CATAGCAAA
120 TAAATAGC-AA
* * * * **
24183268 CCTTATCTCTCTAAAGTTGCAGTAGAGTAGGTTGAAGTAGCA-AGTCTTATCTCCCTAAAGTTGC
1 TCTTATCTCCCTAAAGTTGCAGTGGAGCAGACTGAAG-AGCATAGTCTTATCTCCCTAAAGTTGC
* ** *
24183332 AGTGGAGCAGACTGAAGATA-GCAAGTCTTATCTCTCTGAAGTTTTAGTGCAACAGACTAAAGAT
65 AGTGGAGCAGA-TGAAGATATACAAGTCTTATCTCTCTGAAGTTACAGTG-AGCAGA-T-AA-AT
24183396 AGCAGA
125 AGCA-A
* * * * *
24183402 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG-CCATAATCCTTATCTCTCTAAAGTTGC
1 TCTTATCTCCCTAAAGTTGCAGTGGAGCAGACTGAAGAGCATAGT-CTTATCTCCCTAAAGTTGC
* ** * * *
24183466 AGTAGAGCAGGAAAAAAATATACAA-TCTTTATCTCCCTGAAGTTACAGTGGAGCAGGTTGAAAT
65 AGTGGAGCA-GATGAAGATATACAAGTC-TTATCTCTCTGAAGTTACAGT-GAGCA-GAT-AAAT
24183530 AGCAA
125 AGCAA
* *
24183535 GTCTTACCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGA-CAGTAGATCTTATCTCCCTGAAA-T
1 -TCTTATCTCCCTAAAGTTGCAGTGGAGCAGACTGAAGAGCA-TAG-TCTTATCTCCCT-AAAGT
* *
24183598 TACATTGGAGCAGATCGAAG
62 TGCAGTGGAGCAGAT-GAAG
24183618 CATCAATTCC
Statistics
Matches: 282, Mismatches: 48, Indels: 43
0.76 0.13 0.12
Matches are distributed among these distances:
129 1 0.00
130 26 0.09
131 3 0.01
132 3 0.01
133 5 0.02
134 115 0.41
135 55 0.20
136 8 0.03
137 37 0.13
138 29 0.10
ACGTcount: A:0.32, C:0.18, G:0.21, T:0.28
Consensus pattern (129 bp):
TCTTATCTCCCTAAAGTTGCAGTGGAGCAGACTGAAGAGCATAGTCTTATCTCCCTAAAGTTGCA
GTGGAGCAGATGAAGATATACAAGTCTTATCTCTCTGAAGTTACAGTGAGCAGATAAATAGCAA
Found at i:24184466 original size:20 final size:21
Alignment explanation
Indices: 24184428--24184466 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 21
24184418 TTTACATTTT
**
24184428 TATTCATTATATTTCTATTCC
1 TATTCATTATATTAATATTCC
24184449 TATTCA-TATATTAATATT
1 TATTCATTATATTAATATT
24184467 ATTTTCATTA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 10 0.62
21 6 0.38
ACGTcount: A:0.31, C:0.13, G:0.00, T:0.56
Consensus pattern (21 bp):
TATTCATTATATTAATATTCC
Found at i:24187815 original size:25 final size:25
Alignment explanation
Indices: 24187776--24187827 Score: 86
Period size: 25 Copynumber: 2.1 Consensus size: 25
24187766 CACACATGGC
**
24187776 CGAGACACATGCCCGTGCTTGAGGT
1 CGAGACACACACCCGTGCTTGAGGT
24187801 CGAGACACACACCCGTGCTTGAGGT
1 CGAGACACACACCCGTGCTTGAGGT
24187826 CG
1 CG
24187828 TGTCTCTCAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.21, C:0.31, G:0.31, T:0.17
Consensus pattern (25 bp):
CGAGACACACACCCGTGCTTGAGGT
Found at i:24187935 original size:193 final size:193
Alignment explanation
Indices: 24187606--24187985 Score: 760
Period size: 193 Copynumber: 2.0 Consensus size: 193
24187596 ACTTCACACA
24187606 GTCGAGACACACACCCGTGCTTGAGGTCGTGTCTCTCACATGGCTGAGTCACACGCCCATGTCTC
1 GTCGAGACACACACCCGTGCTTGAGGTCGTGTCTCTCACATGGCTGAGTCACACGCCCATGTCTC
24187671 TGCTTGTGTGCTCAATTCTGGGCAATCTGTTTCTCAAAATTAGGGTGTAGGGGACACAGGGCCGA
66 TGCTTGTGTGCTCAATTCTGGGCAATCTGTTTCTCAAAATTAGGGTGTAGGGGACACAGGGCCGA
24187736 AACACATGCCTGTGGGGGCAAGCCGTGTGTCACACATGGCCGAGACACATGCCCGTGCTTGAG
131 AACACATGCCTGTGGGGGCAAGCCGTGTGTCACACATGGCCGAGACACATGCCCGTGCTTGAG
24187799 GTCGAGACACACACCCGTGCTTGAGGTCGTGTCTCTCACATGGCTGAGTCACACGCCCATGTCTC
1 GTCGAGACACACACCCGTGCTTGAGGTCGTGTCTCTCACATGGCTGAGTCACACGCCCATGTCTC
24187864 TGCTTGTGTGCTCAATTCTGGGCAATCTGTTTCTCAAAATTAGGGTGTAGGGGACACAGGGCCGA
66 TGCTTGTGTGCTCAATTCTGGGCAATCTGTTTCTCAAAATTAGGGTGTAGGGGACACAGGGCCGA
24187929 AACACATGCCTGTGGGGGCAAGCCGTGTGTCACACATGGCCGAGACACATGCCCGTG
131 AACACATGCCTGTGGGGGCAAGCCGTGTGTCACACATGGCCGAGACACATGCCCGTG
24187986 TGTCTACCCA
Statistics
Matches: 187, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
193 187 1.00
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (193 bp):
GTCGAGACACACACCCGTGCTTGAGGTCGTGTCTCTCACATGGCTGAGTCACACGCCCATGTCTC
TGCTTGTGTGCTCAATTCTGGGCAATCTGTTTCTCAAAATTAGGGTGTAGGGGACACAGGGCCGA
AACACATGCCTGTGGGGGCAAGCCGTGTGTCACACATGGCCGAGACACATGCCCGTGCTTGAG
Found at i:24188382 original size:2 final size:2
Alignment explanation
Indices: 24188369--24188409 Score: 73
Period size: 2 Copynumber: 20.5 Consensus size: 2
24188359 ACATGCATGC
*
24188369 AT AT AT AA AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
24188410 AGCTTACAAC
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (2 bp):
AT
Found at i:24215250 original size:40 final size:40
Alignment explanation
Indices: 24215154--24215332 Score: 189
Period size: 40 Copynumber: 4.5 Consensus size: 40
24215144 CGAATGGTGT
* * * *
24215154 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAAA
* *
24215195 CCGGG-TCAACTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGCT-AAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* * *
24215235 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* * * * * *
24215275 CCGGGCTAATTCCCGAGGGCAATTGTGCGAATCACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
*
24215315 CCGGGCTATGTCCCGAAG
1 CCGGGCTAAGTCCCGAAG
24215333 ACAATCGAGC
Statistics
Matches: 114, Mismatches: 22, Indels: 5
0.81 0.16 0.04
Matches are distributed among these distances:
40 89 0.78
41 25 0.22
ACGTcount: A:0.25, C:0.25, G:0.27, T:0.23
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
Found at i:24215301 original size:80 final size:80
Alignment explanation
Indices: 24215154--24215346 Score: 217
Period size: 80 Copynumber: 2.4 Consensus size: 80
24215144 CGAATGGTGT
* * * *
24215154 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGGGTCAACTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGC-GAGTGACTAAATCCGGGTCAACTCCCGAAGGCAATT
* *
24215219 GTGCGAGTTACCAAAA
65 GTGCGAATCACCAAAA
* * * *
24215235 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAATCCGGG-CTAATTCCCGAGGGCAATT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTGACTAAATCCGGGTC-AACTCCCGAAGGCAATT
* *
24215299 GTGCGAATCACTATAA
65 GTGCGAATCACCAAAA
* * * *
24215315 CCGGGCTATGTCCCGAAGACAATCGAGCGAGT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGT
24215347 CGCTATATCC
Statistics
Matches: 94, Mismatches: 17, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
79 1 0.01
80 68 0.72
81 25 0.27
ACGTcount: A:0.26, C:0.25, G:0.27, T:0.22
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTGACTAAATCCGGGTCAACTCCCGAAGGCAATTG
TGCGAATCACCAAAA
Found at i:24215353 original size:40 final size:40
Alignment explanation
Indices: 24215205--24215358 Score: 132
Period size: 40 Copynumber: 3.9 Consensus size: 40
24215195 CCGGGTCAAC
* * * * * * *
24215205 TCCCGAAGGCATTTGTGCGAGTTACCAAAACCGGGTTAAG
1 TCCCGAAGGCAATCGTGCGAGTCACTATAACCGGGCTATG
* *
24215245 TCCCGAAGGCATTCGTGCGAGTTACTA-AATCCGGGCTAAT-
1 TCCCGAAGGCAATCGTGCGAGTCACTATAA-CCGGGCT-ATG
* * *
24215285 TCCCGAGGGCAATTGTGCGAATCACTATAACCGGGCTATG
1 TCCCGAAGGCAATCGTGCGAGTCACTATAACCGGGCTATG
* * * *
24215325 TCCCGAAGACAATCGAGCGAGTCGCTATATCCGG
1 TCCCGAAGGCAATCGTGCGAGTCACTATAACCGG
24215359 TTAAATTTCG
Statistics
Matches: 94, Mismatches: 16, Indels: 8
0.80 0.14 0.07
Matches are distributed among these distances:
39 4 0.04
40 87 0.93
41 3 0.03
ACGTcount: A:0.26, C:0.25, G:0.27, T:0.22
Consensus pattern (40 bp):
TCCCGAAGGCAATCGTGCGAGTCACTATAACCGGGCTATG
Found at i:24216867 original size:21 final size:21
Alignment explanation
Indices: 24216841--24216880 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
24216831 GGCCGTGTGT
24216841 CACACACGGTCTAGACACACA
1 CACACACGGTCTAGACACACA
24216862 CACACACGGTCTAGACACA
1 CACACACGGTCTAGACACA
24216881 TGCTCGTGCG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.38, C:0.38, G:0.15, T:0.10
Consensus pattern (21 bp):
CACACACGGTCTAGACACACA
Found at i:24219396 original size:14 final size:14
Alignment explanation
Indices: 24219377--24219416 Score: 71
Period size: 14 Copynumber: 2.9 Consensus size: 14
24219367 ATTTAGAACT
24219377 TAATGTCATTATGC
1 TAATGTCATTATGC
24219391 TAATGTCATTATGC
1 TAATGTCATTATGC
*
24219405 TAAGGTCATTAT
1 TAATGTCATTAT
24219417 AAATGGTTAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
14 25 1.00
ACGTcount: A:0.30, C:0.12, G:0.15, T:0.42
Consensus pattern (14 bp):
TAATGTCATTATGC
Found at i:24219559 original size:10 final size:10
Alignment explanation
Indices: 24219544--24219572 Score: 58
Period size: 10 Copynumber: 2.9 Consensus size: 10
24219534 AATCAATTAA
24219544 ACTTTGCATT
1 ACTTTGCATT
24219554 ACTTTGCATT
1 ACTTTGCATT
24219564 ACTTTGCAT
1 ACTTTGCAT
24219573 GGGAATGGAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.21, C:0.21, G:0.10, T:0.48
Consensus pattern (10 bp):
ACTTTGCATT
Found at i:24224157 original size:47 final size:46
Alignment explanation
Indices: 24224041--24224443 Score: 317
Period size: 47 Copynumber: 8.6 Consensus size: 46
24224031 GATTTCTTGT
* * *
24224041 GTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGA
1 GTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCTAGATGATGA
* * *
24224087 GTGCCAGTATAAGACCATTTCTGGGACATGGCATTGGCGTAGA-GATGA
1 GTGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC-TAGATGATGA
* *
24224135 GTGCCAGTGTAAGACATGTCTGGTACATGCATCGGCCTCGATGATGA
1 GTGCCAGTGTAAGACATGTCTGGGACATGCATCGG-CTAGATGATGA
** * *
24224182 -TAGCCAGTGTAAGATGTGTCTGGGACAAGCATCGGCTA-A-GA-GTT
1 GT-GCCAGTGTAAGACATGTCTGGGACATGCATCGGCTAGATGATG-A
* *
24224226 GTGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGATGATGA
1 GTGCCAGTGTAAGACATGTCTGGGACATGCATCGG-CTAGATGATGA
** * * *
24224273 -TAGCCAGTGTAAGATGTGTCTAGGACACGCATCGGCTA-A-GA-GTT
1 GT-GCCAGTGTAAGACATGTCTGGGACATGCATCGGCTAGATGATG-A
* *
24224317 GTGCTAGTGTAAGACATGTCTGGGACATGCATCAGC-ACGTAT-ATACGA
1 GTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCTA-G-ATGAT--GA
* * * * *
24224365 GAGCTAGTATAAGACCATGTCTGGGACATGGCATTGGCCTCGATGATG-
1 GTGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGG-CTAGATGATGA
*
24224413 CTAGCCAGTGTAAGACCATGTCTGGGACATG
1 GT-GCCAGTGTAAGA-CATGTCTGGGACATG
24224444 GCATAGGCAA
Statistics
Matches: 283, Mismatches: 46, Indels: 54
0.74 0.12 0.14
Matches are distributed among these distances:
43 3 0.01
44 61 0.22
45 6 0.02
46 31 0.11
47 90 0.32
48 38 0.13
49 43 0.15
50 7 0.02
51 4 0.01
ACGTcount: A:0.26, C:0.19, G:0.30, T:0.25
Consensus pattern (46 bp):
GTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCTAGATGATGA
Found at i:24224254 original size:91 final size:91
Alignment explanation
Indices: 24224040--24224349 Score: 419
Period size: 91 Copynumber: 3.4 Consensus size: 91
24224030 AGATTTCTTG
* * * *
24224040 TGTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCAC-ATTATGAGT-GCCAGTATAAGACC
1 TGTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGATGATGA-TAGCCAGTGTAAGA-T
* * * *
24224103 ATTTCTGGGACATGGCATTGGCGT-AGAGAT
64 GTGTCTGGGACA-AGCATCGGC-TAAGAG-T
* *
24224133 GAGTGCCAGTGTAAGACATGTCTGGTACATGCATCGGCCTCGATGATGATAGCCAGTGTAAGATG
1 -TGTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGATGATGATAGCCAGTGTAAGATG
24224198 TGTCTGGGACAAGCATCGGCTAAGAGT
65 TGTCTGGGACAAGCATCGGCTAAGAGT
*
24224225 TGTGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGATGATGATAGCCAGTGTAAGATGT
1 TGTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGATGATGATAGCCAGTGTAAGATGT
* *
24224290 GTCTAGGACACGCATCGGCTAAGAGT
66 GTCTGGGACAAGCATCGGCTAAGAGT
*
24224316 TGTGCTAGTGTAAGACATGTCTGGGACATGCATC
1 TGTGCCAGTGTAAGACATGTCTGGGACATGCATC
24224350 AGCACGTATA
Statistics
Matches: 198, Mismatches: 15, Indels: 9
0.89 0.07 0.04
Matches are distributed among these distances:
91 120 0.61
92 2 0.01
93 11 0.06
94 48 0.24
95 17 0.09
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (91 bp):
TGTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGATGATGATAGCCAGTGTAAGATGT
GTCTGGGACAAGCATCGGCTAAGAGT
Found at i:24228375 original size:93 final size:93
Alignment explanation
Indices: 24228263--24228433 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
24228253 CGCCATAAGT
* *
24228263 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCAGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
24228328 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* *
24228356 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
24228421 CGAGTTCGGATGC
66 CGAGTTCGGATGC
24228434 TCAACCATCC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:24228430 original size:46 final size:46
Alignment explanation
Indices: 24228255--24228430 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
24228245 ATGTAACCCG
* * *
24228255 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
24228301 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* *
24228351 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
24228394 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
24228431 TGCTCAACCA
Statistics
Matches: 110, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 28 0.25
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:24231334 original size:40 final size:40
Alignment explanation
Indices: 24231251--24231396 Score: 138
Period size: 40 Copynumber: 3.6 Consensus size: 40
24231241 TCGAATGATG
* *
24231251 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTGACCAAA
* *
24231291 TCCGGACTAAGGT-CCGAAGGCATTTGTGCGAGTTACCAAA
1 TCCGGGCTAA-GTCCCGAAGGCATTTGTGCGAGTGACCAAA
* * **
24231331 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGCT-ATTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TGACCA-AA
* *
24231372 -CCGGGCTATGTCCCGAAGGCTTTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
24231397 AGTGAGACGC
Statistics
Matches: 88, Mismatches: 13, Indels: 10
0.79 0.12 0.09
Matches are distributed among these distances:
39 2 0.02
40 74 0.84
41 12 0.14
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACCAAA
Found at i:24241443 original size:2 final size:2
Alignment explanation
Indices: 24241436--24241472 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
24241426 TAGAACAAAA
24241436 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
24241473 AAATACTGTT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:24242902 original size:45 final size:43
Alignment explanation
Indices: 24242851--24242965 Score: 135
Period size: 45 Copynumber: 2.6 Consensus size: 43
24242841 TATGTGTTCT
* *
24242851 CGTGTAAGACCACGTCCGGGACGTTGGAATAGATATATATAGTTA
1 CGTGTAAGACCACGTCTGGGACGTTGGAATAGATATAT-GA-TTA
* *
24242896 CGTGTAAGACC-CTGTCTGGGACAG-TGGCATCGATATATGATTA
1 CGTGTAAGACCAC-GTCTGGGAC-GTTGGAATAGATATATGATTA
*
24242939 CATGTAAGACCACGTCTGGGACGTTGG
1 CGTGTAAGACCACGTCTGGGACGTTGG
24242966 GATTGTACGA
Statistics
Matches: 61, Mismatches: 5, Indels: 10
0.80 0.07 0.13
Matches are distributed among these distances:
42 1 0.02
43 25 0.41
44 3 0.05
45 31 0.51
46 1 0.02
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.26
Consensus pattern (43 bp):
CGTGTAAGACCACGTCTGGGACGTTGGAATAGATATATGATTA
Found at i:24248187 original size:68 final size:64
Alignment explanation
Indices: 24247973--24248194 Score: 189
Period size: 68 Copynumber: 3.4 Consensus size: 64
24247963 CATAATTTTG
* * *
24247973 GCTCTCTTGTACACATGGTGTACACATAGTATCAACCATGTGACCTAGCCACT-TTATCTCGTA
1 GCTCTCTTGTACACATGGTGTACACATAGTATCACCCATGCGACCTAGCTACTATTATCTCGTA
* ** * * * * * * * *
24248036 GCTCTTTTGTTTACATGGTGTCCTTCACCTGGAACCACACATGCAACCTAGCTAC-ATCTATCTT
1 GCTCTCTTGTACACATGGTG---TACACATAGTATCACCCATGCGACCTAGCTACTAT-TATCTC
24248100 GTA
62 GTA
* *
24248103 GCTCTCTTAT-CTACATGGTGTACACATAGTATCACCCATACGACCTAGCTACCTTATAATATCT
1 GCTCTCTTGTAC-ACATGGTGTACACATAGTATCACCCATGCGACCTAGCTA-C-TAT--TATCT
24248167 CGTA
61 CGTA
*
24248171 GCTCTCTTGTACACATGGTATACA
1 GCTCTCTTGTACACATGGTGTACA
24248195 TCCCGTATTA
Statistics
Matches: 119, Mismatches: 29, Indels: 17
0.72 0.18 0.10
Matches are distributed among these distances:
63 17 0.14
64 23 0.19
65 1 0.01
66 23 0.19
67 26 0.22
68 28 0.24
69 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.14, T:0.33
Consensus pattern (64 bp):
GCTCTCTTGTACACATGGTGTACACATAGTATCACCCATGCGACCTAGCTACTATTATCTCGTA
Found at i:24248721 original size:30 final size:30
Alignment explanation
Indices: 24248687--24248747 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
24248677 TCCTTAACTC
24248687 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
24248717 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
24248747 A
1 A
24248748 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:24250168 original size:2 final size:2
Alignment explanation
Indices: 24250161--24250185 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
24250151 AACACTCATC
24250161 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
24250186 ATTTGCTTCA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:24251805 original size:47 final size:47
Alignment explanation
Indices: 24251746--24251917 Score: 226
Period size: 47 Copynumber: 3.7 Consensus size: 47
24251736 ATCCATAAAT
* *
24251746 GAACTCGGACTCAATTCAACGAGTTCGGATGCCTAGTTACATTTCAC
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
*
24251793 GAACTCGGACTCAACTCAACGAGTTCGAATGCCTAGTTACATCTCAC
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
* * * *
24251840 GAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-TCA-C
24251886 GAACTCGGACTCAACTCAACGAGTTCGGATGC
1 GAACTCGGACTCAACTCAACGAGTTCGGATGC
24251918 TCAACCATCC
Statistics
Matches: 111, Mismatches: 8, Indels: 10
0.86 0.06 0.08
Matches are distributed among these distances:
43 6 0.05
44 2 0.02
45 2 0.02
46 29 0.26
47 72 0.65
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.24
Consensus pattern (47 bp):
GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:24251907 original size:46 final size:45
Alignment explanation
Indices: 24251699--24251914 Score: 190
Period size: 47 Copynumber: 4.7 Consensus size: 45
24251689 CGCCCCTAAG
* * *
24251699 TGAACTCGGACTCAACTCAACGAGCTCGGGC--GTTTGCATCCATAAA
1 TGAACTCGGACTCAACTCAACGAGTTCGGACTAG-TTACAT-CAT-AA
* * *
24251745 TGAACTCGGACTCAATTCAACGAGTTCGGATGCCTAGTTACAT-TTCA
1 TGAACTCGGACTCAACTCAACGAGTTCGGA---CTAGTTACATCATAA
* * *
24251792 CGAACTCGGACTCAACTCAACGAGTTCGAATGCCTAGTTACATC-TCA
1 TGAACTCGGACTCAACTCAACGAGTTCG---GACTAGTTACATCATAA
* * *
24251839 CGAACTCGGACTCAACTCAACGAGTTCGGAC-ATTTGCATCCATAA
1 TGAACTCGGACTCAACTCAACGAGTTCGGACTAGTTACAT-CATAA
24251884 GTGAACTCGGACTCAACTCAACGAGTTCGGA
1 -TGAACTCGGACTCAACTCAACGAGTTCGGA
24251915 TGCTCAACCA
Statistics
Matches: 144, Mismatches: 14, Indels: 24
0.79 0.08 0.13
Matches are distributed among these distances:
43 6 0.04
44 3 0.02
45 2 0.01
46 56 0.39
47 68 0.47
48 1 0.01
49 1 0.01
50 6 0.04
51 1 0.01
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.24
Consensus pattern (45 bp):
TGAACTCGGACTCAACTCAACGAGTTCGGACTAGTTACATCATAA
Found at i:24255364 original size:68 final size:65
Alignment explanation
Indices: 24255176--24255407 Score: 199
Period size: 68 Copynumber: 3.5 Consensus size: 65
24255166 TTGGCTCTCT
* * *
24255176 TGTACACATAGTATCACCCATGTGACCTAGCCACT--TTATCTCGTAGCTCTCTTGTTTACATGG
1 TGTACACATAGTATCACACATGTGACCTAGCTACTCATTATCTCGTAGCTCTCTTGTCTACATGG
* * * * * **
24255239 TGTCCTTCACCTGGAACCACACATGCAACCTAGCTA--CATCTATCTCGTAGCTCTCTTGTCTAC
1 TG---TACACATAGTATCACACATGTGACCTAGCTACTCAT-TATCTCGTAGCTCTCTTGTCTAC
24255302 ATGG
62 ATGG
*
24255306 TGTACACATAGTATCACCCATGTGACCTAGCTACCTCATAATATCTCGTAGCTCTCTTGTAC-AC
1 TGTACACATAGTATCACACATGTGACCTAGCTA-CTCAT--TATCTCGTAGCTCTCTTGT-CTAC
24255370 AT--
62 ATGG
* * *
24255372 TGTATACATCCCGTATTACACATGTGACCTAGCTAC
1 TGTACACAT--AGTATCACACATGTGACCTAGCTAC
24255408 ATACCATATG
Statistics
Matches: 133, Mismatches: 23, Indels: 22
0.75 0.13 0.12
Matches are distributed among these distances:
63 2 0.02
64 23 0.17
66 31 0.23
67 32 0.24
68 44 0.33
69 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.14, T:0.32
Consensus pattern (65 bp):
TGTACACATAGTATCACACATGTGACCTAGCTACTCATTATCTCGTAGCTCTCTTGTCTACATGG
Found at i:24261560 original size:15 final size:15
Alignment explanation
Indices: 24261540--24261569 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
24261530 AATGTGATAG
24261540 CTTACTAAGCTATGA
1 CTTACTAAGCTATGA
24261555 CTTACTAAGCTATGA
1 CTTACTAAGCTATGA
24261570 TAGCTTACAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.33, C:0.20, G:0.13, T:0.33
Consensus pattern (15 bp):
CTTACTAAGCTATGA
Found at i:24264531 original size:45 final size:45
Alignment explanation
Indices: 24264434--24264556 Score: 130
Period size: 45 Copynumber: 2.8 Consensus size: 45
24264424 CTCAAATCAT
* *
24264434 CGGCATT-TTGCCTGTTAGGCTCG-AGGCCCG-ATATCAGTTCAC
1 CGGCATTATAGCCTGCTAGGCTCGAAGGCCCGAATATCAGTTCAC
*
24264476 CAGCATTATAGCCTGCTAGGCTCGAAGGCCCGAATAGT-A-TCTCAC
1 CGGCATTATAGCCTGCTAGGCTCGAAGGCCCGAATA-TCAGT-TCAC
** * *
24264521 CGGCATTATAGTTTGCTAAGCTCAAAGGCCCGAATA
1 CGGCATTATAGCCTGCTAGGCTCGAAGGCCCGAATA
24264557 ATCAAGTCAA
Statistics
Matches: 68, Mismatches: 8, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
42 6 0.09
43 14 0.21
44 8 0.12
45 39 0.57
46 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (45 bp):
CGGCATTATAGCCTGCTAGGCTCGAAGGCCCGAATATCAGTTCAC
Found at i:24264947 original size:43 final size:43
Alignment explanation
Indices: 24264873--24265083 Score: 314
Period size: 43 Copynumber: 4.9 Consensus size: 43
24264863 ACATATCATT
* * * *
24264873 TCACCGGCATTACGCCTGCTAGGTACGAAGGCCCGAATAAACA
1 TCACCGGCACTAAGCCTGCTAGGCACGAAGGCCCGAATACACA
* * *
24264916 TCACTGGCACGAAGCCTGCTAGGCACGAAGGCTCGAATACACA
1 TCACCGGCACTAAGCCTGCTAGGCACGAAGGCCCGAATACACA
* *
24264959 TCACTGGCACTAAGCCTGCTAGGAACGAAGGCCCGAATACACA
1 TCACCGGCACTAAGCCTGCTAGGCACGAAGGCCCGAATACACA
*
24265002 TCACCGGCACTAAGCCTGTTAGGCACGAAGGCCCGAATACACA
1 TCACCGGCACTAAGCCTGCTAGGCACGAAGGCCCGAATACACA
* *
24265045 TCACCGGCACTAACCCTGCTAGGCACAAAGGCCCGAATA
1 TCACCGGCACTAAGCCTGCTAGGCACGAAGGCCCGAATA
24265084 TAATACCAGT
Statistics
Matches: 152, Mismatches: 16, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 152 1.00
ACGTcount: A:0.31, C:0.32, G:0.23, T:0.14
Consensus pattern (43 bp):
TCACCGGCACTAAGCCTGCTAGGCACGAAGGCCCGAATACACA
Found at i:24265123 original size:38 final size:38
Alignment explanation
Indices: 24265076--24265159 Score: 114
Period size: 38 Copynumber: 2.2 Consensus size: 38
24265066 GGCACAAAGG
* * * * *
24265076 CCCGAATATAATACCAGTACTAGGCCTGCGGGATTTAT
1 CCCGAATATAATACCAGCACGAAGCCTACGGGATTTAA
*
24265114 CCCGGATATAATACCAGCACGAAGCCTACGGGATTTAA
1 CCCGAATATAATACCAGCACGAAGCCTACGGGATTTAA
24265152 CCCGAATA
1 CCCGAATA
24265160 CACATCAAAT
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.32, C:0.26, G:0.20, T:0.21
Consensus pattern (38 bp):
CCCGAATATAATACCAGCACGAAGCCTACGGGATTTAA
Done.