Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr02 99090824
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 99090824
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 317 characters in sequence are not A, C, G, or T
File 82 of 318
Found at i:24271746 original size:2 final size:2
Alignment explanation
Indices: 24271739--24271765 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
24271729 CTCTTGCATG
24271739 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
24271766 GTTTGCACAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:24272565 original size:40 final size:40
Alignment explanation
Indices: 24272509--24272726 Score: 197
Period size: 40 Copynumber: 5.5 Consensus size: 40
24272499 CATGAGCATT
* **
24272509 TGAATGATACCCGGGCTAAGTTCCGAAGGCATTTATGCTAG
1 TGAAT-ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAG
* *
24272550 TGAATATATCCGGGCTAAGTCCCAAAGGCATTTATGCTAG
1 TGAATATATCCGGGCTAAGACCCGAAGGCATTTATGCTAG
* * ** *
24272590 TTATTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAG
1 TGAATATATCCGGGCTAAGACCCGAAGGCATTTATGCTAG
* * *
24272630 TTG-TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAG
1 -TGAATATATCCGGGCTAAGACCCGAAGGCATTTATGCTAG
* ** * * * * *
24272670 TTACCAAATCCGGGTTAAGACCCGAAGGCAATTGTGCTTG
1 TGAATATATCCGGGCTAAGACCCGAAGGCATTTATGCTAG
**
24272710 TGGTTATATCC-GGCTAA
1 TGAATATATCCGGGCTAA
24272727 ATTCTGAAGA
Statistics
Matches: 148, Mismatches: 27, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
39 6 0.04
40 136 0.92
41 6 0.04
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.27
Consensus pattern (40 bp):
TGAATATATCCGGGCTAAGACCCGAAGGCATTTATGCTAG
Found at i:24272658 original size:80 final size:79
Alignment explanation
Indices: 24272519--24272726 Score: 231
Period size: 80 Copynumber: 2.6 Consensus size: 79
24272509 TGAATGATAC
** * * *
24272519 CCGGGCTAAGTTCCGAAGGCATTTATGCTAG-TGAATATATCCGGGCTAAGTCCCAAAGGCATTT
1 CCGGGCTAAGACCCGAAGGCA-TTGTGCTAGTTG-TTATATCCGGGCTAAGACCCAAAGGCATTT
* ** *
24272583 ATGCTAGTTATTATAT
64 ATGCAAGTTACCAAAT
* * *
24272599 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATATCCGGGCTAAGACCCGAAGGCATTTG
1 CCGGGCTAAGACCCGAAGGCATT-GTGCTAGTTGTTATATCCGGGCTAAGACCCAAAGGCATTTA
24272664 TGCAAGTTACCAAAT
65 TGCAAGTTACCAAAT
* * *
24272679 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATATCC-GGCTAA
1 CCGGGCTAAGACCCGAAGGC-ATTGTGCTAGTTGTTATATCCGGGCTAA
24272727 ATTCTGAAGA
Statistics
Matches: 109, Mismatches: 16, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
79 8 0.07
80 96 0.88
81 5 0.05
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.27
Consensus pattern (79 bp):
CCGGGCTAAGACCCGAAGGCATTGTGCTAGTTGTTATATCCGGGCTAAGACCCAAAGGCATTTAT
GCAAGTTACCAAAT
Found at i:24286242 original size:28 final size:28
Alignment explanation
Indices: 24286210--24286279 Score: 99
Period size: 28 Copynumber: 2.5 Consensus size: 28
24286200 ATAGTAAGTC
24286210 CGCACACTTAGTGCT-TA-ATAGTCAAACT
1 CGCACACTTAGTGCTATACA-A-TCAAACT
*
24286238 CGCACACTTAGTGCTATACAATTAAACT
1 CGCACACTTAGTGCTATACAATCAAACT
24286266 CGCACACTTAGTGC
1 CGCACACTTAGTGC
24286280 CAATCTCATT
Statistics
Matches: 39, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
28 35 0.90
29 3 0.08
30 1 0.03
ACGTcount: A:0.31, C:0.27, G:0.14, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATACAATCAAACT
Found at i:24289253 original size:28 final size:28
Alignment explanation
Indices: 24289221--24289290 Score: 99
Period size: 28 Copynumber: 2.5 Consensus size: 28
24289211 ATAGTAAGTC
24289221 CGCACACTTAGTGCT-TA-ATAGTCAAACT
1 CGCACACTTAGTGCTATACA-A-TCAAACT
*
24289249 CGCACACTTAGTGCTATACAATTAAACT
1 CGCACACTTAGTGCTATACAATCAAACT
24289277 CGCACACTTAGTGC
1 CGCACACTTAGTGC
24289291 CAATCTCATT
Statistics
Matches: 39, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
28 35 0.90
29 3 0.08
30 1 0.03
ACGTcount: A:0.31, C:0.27, G:0.14, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATACAATCAAACT
Found at i:24291800 original size:17 final size:18
Alignment explanation
Indices: 24291760--24291802 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
24291750 ATATGGCCTC
*
24291760 TATGGATTTTTCTTAAAT
1 TATGGATTTTTATTAAAT
* *
24291778 TTTGGATTTTTATT-AGT
1 TATGGATTTTTATTAAAT
24291795 TATGGATT
1 TATGGATT
24291803 ATAACTACTT
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
17 9 0.43
18 12 0.57
ACGTcount: A:0.23, C:0.02, G:0.16, T:0.58
Consensus pattern (18 bp):
TATGGATTTTTATTAAAT
Found at i:24292288 original size:25 final size:25
Alignment explanation
Indices: 24292260--24292308 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
24292250 CTATTTTTGA
* *
24292260 TAGTATATCCTGAAACTGCTATAGG
1 TAGTATATACTGAAACTACTATAGG
*
24292285 TAGTATATACTGAGACTACTATAG
1 TAGTATATACTGAAACTACTATAG
24292309 ATAGACTGTA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.35, C:0.14, G:0.18, T:0.33
Consensus pattern (25 bp):
TAGTATATACTGAAACTACTATAGG
Found at i:24295868 original size:41 final size:41
Alignment explanation
Indices: 24295823--24295940 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
24295813 TGAAAGATAA
24295823 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
24295864 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
24295894 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
24295935 ATGTAG
1 ATGTAG
24295941 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:24295879 original size:71 final size:71
Alignment explanation
Indices: 24295791--24295954 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
24295781 GAGATGTATC
24295791 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
24295856 AGGACA
66 AGGACA
24295862 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
24295927 AGGACA
66 AGGACA
24295933 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
24295955 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:24306559 original size:48 final size:48
Alignment explanation
Indices: 24306502--24306597 Score: 192
Period size: 48 Copynumber: 2.0 Consensus size: 48
24306492 CGCGTAACGC
24306502 GTAAAACTTGTGGTCTATTAGCTAAAAGTGTCAAATAGCTATATAGAA
1 GTAAAACTTGTGGTCTATTAGCTAAAAGTGTCAAATAGCTATATAGAA
24306550 GTAAAACTTGTGGTCTATTAGCTAAAAGTGTCAAATAGCTATATAGAA
1 GTAAAACTTGTGGTCTATTAGCTAAAAGTGTCAAATAGCTATATAGAA
24306598 TATTAAAGTA
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 48 1.00
ACGTcount: A:0.40, C:0.10, G:0.19, T:0.31
Consensus pattern (48 bp):
GTAAAACTTGTGGTCTATTAGCTAAAAGTGTCAAATAGCTATATAGAA
Found at i:24307915 original size:45 final size:46
Alignment explanation
Indices: 24307824--24307955 Score: 160
Period size: 45 Copynumber: 2.9 Consensus size: 46
24307814 CCGATATATT
* * * * *
24307824 AGCTCGTAAGAGCTTACTGTTTTTAGCTCATTAGATCGTACCGTTTC
1 AGCTCGTATGAGCTTACTG-TTTCAGCTCAATAGAGCTTACCGTTTC
*
24307871 AGCTCGTATGAGCTTACTG-TTCAGCTCAATAGAGCTTATCGTTTC
1 AGCTCGTATGAGCTTACTGTTTCAGCTCAATAGAGCTTACCGTTTC
* *
24307916 AGCTC-AATAGAGCTTACCGTTTCAGCTCAATAGAGCTTAC
1 AGCTCGTAT-GAGCTTACTGTTTCAGCTCAATAGAGCTTAC
24307956 TGCTCATCAG
Statistics
Matches: 74, Mismatches: 9, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
44 2 0.03
45 35 0.47
46 19 0.26
47 18 0.24
ACGTcount: A:0.24, C:0.23, G:0.19, T:0.34
Consensus pattern (46 bp):
AGCTCGTATGAGCTTACTGTTTCAGCTCAATAGAGCTTACCGTTTC
Found at i:24307919 original size:23 final size:22
Alignment explanation
Indices: 24307832--24307955 Score: 126
Period size: 23 Copynumber: 5.4 Consensus size: 22
24307822 TTAGCTCGTA
* *
24307832 AGAGCTTACTGTTTTTAGCTCATT
1 AGAGCTTAC-G-TTTCAGCTCAAT
* * *
24307856 AGATCGTACCGTTTCAGCTC-GT
1 AGAGCTTA-CGTTTCAGCTCAAT
24307878 ATGAGCTTAC-TGTTCAGCTCAAT
1 A-GAGCTTACGT-TTCAGCTCAAT
24307901 AGAGCTTATCGTTTCAGCTCAAT
1 AGAGCTTA-CGTTTCAGCTCAAT
24307924 AGAGCTTACCGTTTCAGCTCAAT
1 AGAGCTTA-CGTTTCAGCTCAAT
24307947 AGAGCTTAC
1 AGAGCTTAC
24307956 TGCTCATCAG
Statistics
Matches: 86, Mismatches: 8, Indels: 14
0.80 0.07 0.13
Matches are distributed among these distances:
21 1 0.01
22 19 0.22
23 57 0.66
24 8 0.09
25 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.19, T:0.35
Consensus pattern (22 bp):
AGAGCTTACGTTTCAGCTCAAT
Found at i:24308217 original size:20 final size:20
Alignment explanation
Indices: 24308178--24308231 Score: 56
Period size: 20 Copynumber: 2.8 Consensus size: 20
24308168 GTTATTACTG
*
24308178 ATGAACTACTATTTACATGA
1 ATGAACTACTAGTTACATGA
* *
24308198 ATGAACTACTGGTTATATGA
1 ATGAACTACTAGTTACATGA
* *
24308218 ACGAATTA-TAGTTA
1 ATGAACTACTAGTTA
24308232 TACGAATAGA
Statistics
Matches: 28, Mismatches: 6, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
19 5 0.18
20 23 0.82
ACGTcount: A:0.39, C:0.11, G:0.15, T:0.35
Consensus pattern (20 bp):
ATGAACTACTAGTTACATGA
Found at i:24308578 original size:3 final size:3
Alignment explanation
Indices: 24308570--24308662 Score: 186
Period size: 3 Copynumber: 31.0 Consensus size: 3
24308560 TTTAAAATTT
24308570 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
24308618 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
24308663 GCATAAAGAA
Statistics
Matches: 90, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 90 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:24310509 original size:28 final size:27
Alignment explanation
Indices: 24310459--24310511 Score: 79
Period size: 28 Copynumber: 1.9 Consensus size: 27
24310449 CTATTCAGAA
* *
24310459 ATCAGTGTTAACTGGGCCTTAGCCCAT
1 ATCAGTATTAACTGGGCCATAGCCCAT
24310486 ATCAGTATTAATCTGGGCCATAGCCC
1 ATCAGTATTAA-CTGGGCCATAGCCC
24310512 TATTACAATA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
27 10 0.43
28 13 0.57
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (27 bp):
ATCAGTATTAACTGGGCCATAGCCCAT
Found at i:24310626 original size:20 final size:19
Alignment explanation
Indices: 24310601--24310656 Score: 58
Period size: 20 Copynumber: 2.9 Consensus size: 19
24310591 ATTGGGTCTT
*
24310601 GCCCATATTAACACAGTTGG
1 GCCCATATTAAAACAGTT-G
* * *
24310621 GCCCATTTTAATACAATTG
1 GCCCATATTAAAACAGTTG
*
24310640 GCCCATAATAAAACAGT
1 GCCCATATTAAAACAGT
24310657 CTCATATGAT
Statistics
Matches: 29, Mismatches: 7, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
19 14 0.48
20 15 0.52
ACGTcount: A:0.36, C:0.23, G:0.14, T:0.27
Consensus pattern (19 bp):
GCCCATATTAAAACAGTTG
Found at i:24317113 original size:39 final size:40
Alignment explanation
Indices: 24317008--24317215 Score: 226
Period size: 40 Copynumber: 5.2 Consensus size: 40
24316998 TATTCGAATG
* * *
24317008 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACT
* *
24317049 ATATCCAGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACT
*
24317089 A-ATTCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACT
1 ATA-TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * *
24317128 AAATCCGGGTTAAGTCCCGAAGGCATTTCTGCGAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * * **
24317168 ATAACCGAGCTATGTCCCGAAGGCATTTGAACGAG-TAGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CT
24317208 ATATCCGG
1 ATATCCGG
24317216 TTAAATTCCG
Statistics
Matches: 140, Mismatches: 21, Indels: 13
0.80 0.12 0.07
Matches are distributed among these distances:
39 37 0.26
40 75 0.54
41 27 0.19
42 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:24317154 original size:79 final size:81
Alignment explanation
Indices: 24317008--24317194 Score: 220
Period size: 79 Copynumber: 2.3 Consensus size: 81
24316998 TATTCGAATG
* * *
24317008 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTATATCCAGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCAGACTAAGATCCGAAGGC
*
24317073 ATTTGTGCGAGTTACT
66 ATTTCTGCGAGTTACT
* * * **
24317089 A-ATTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAG
1 ATA-TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCAGACTAAGAT-CCGAAG
24317150 GCATTTCTGCGAGTTACT
64 GCATTTCTGCGAGTTACT
* * *
24317168 ATAACCGAGCTATGTCCCGAAGGCATT
1 ATATCCGGGCTAAGTCCCGAAGGCATT
24317195 TGAACGAGTA
Statistics
Matches: 90, Mismatches: 12, Indels: 9
0.81 0.11 0.08
Matches are distributed among these distances:
78 1 0.01
79 48 0.53
80 29 0.32
81 12 0.13
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (81 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCAGACTAAGATCCGAAGGC
ATTTCTGCGAGTTACT
Found at i:24317218 original size:79 final size:79
Alignment explanation
Indices: 24317065--24317229 Score: 192
Period size: 79 Copynumber: 2.1 Consensus size: 79
24317055 AGACTAAGAT
* * * **
24317065 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTCTGCGAGTTACTAATACCGAGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
*
24317130 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
24317144 CCGAAGGCATTTCTGCGAGTTACT-ATAACCGAGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTCTGCGAGTTACTAAT-ACCGAGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
* *
24317207 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
24317223 CCGAAGG
1 CCGAAGG
24317230 TACGTGATTC
Statistics
Matches: 73, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.64
80 24 0.33
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTCTGCGAGTTACTAATACCGAGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:24319059 original size:28 final size:27
Alignment explanation
Indices: 24319027--24319095 Score: 88
Period size: 27 Copynumber: 2.5 Consensus size: 27
24319017 ATAGTAAGTC
24319027 CGCACACTTAGTGCT-TA-ATAGTCAAACT
1 CGCACACTTAGTGCTATACA-A-T-AAACT
24319055 CGCACACTTAGTGCTATACAATAAACT
1 CGCACACTTAGTGCTATACAATAAACT
*
24319082 CGCACATTTAGTGC
1 CGCACACTTAGTGC
24319096 CAATCTCATT
Statistics
Matches: 38, Mismatches: 1, Indels: 5
0.86 0.02 0.11
Matches are distributed among these distances:
27 18 0.47
28 16 0.42
29 3 0.08
30 1 0.03
ACGTcount: A:0.32, C:0.26, G:0.14, T:0.28
Consensus pattern (27 bp):
CGCACACTTAGTGCTATACAATAAACT
Found at i:24326854 original size:28 final size:28
Alignment explanation
Indices: 24326822--24326891 Score: 99
Period size: 28 Copynumber: 2.5 Consensus size: 28
24326812 ATAGTAAGTC
24326822 CGCACACTTAGTGCT-TA-ATAGTCAAACT
1 CGCACACTTAGTGCTATACA-A-TCAAACT
*
24326850 CGCACACTTAGTGCTATACAATTAAACT
1 CGCACACTTAGTGCTATACAATCAAACT
24326878 CGCACACTTAGTGC
1 CGCACACTTAGTGC
24326892 CAATCTCATT
Statistics
Matches: 39, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
28 35 0.90
29 3 0.08
30 1 0.03
ACGTcount: A:0.31, C:0.27, G:0.14, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATACAATCAAACT
Found at i:24329400 original size:17 final size:18
Alignment explanation
Indices: 24329360--24329402 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
24329350 ATATGGCCTC
*
24329360 TATGGATTTTTCTTAAAT
1 TATGGATTTTTATTAAAT
* *
24329378 TTTGGATTTTTATT-AGT
1 TATGGATTTTTATTAAAT
24329395 TATGGATT
1 TATGGATT
24329403 ATAACTACTT
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
17 9 0.43
18 12 0.57
ACGTcount: A:0.23, C:0.02, G:0.16, T:0.58
Consensus pattern (18 bp):
TATGGATTTTTATTAAAT
Found at i:24329888 original size:25 final size:25
Alignment explanation
Indices: 24329860--24329908 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
24329850 CTATTTTTGA
* *
24329860 TAGTATATCCTGAAACTGCTATAGG
1 TAGTATATACTGAAACTACTATAGG
*
24329885 TAGTATATACTGAGACTACTATAG
1 TAGTATATACTGAAACTACTATAG
24329909 ATAGACTGTA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.35, C:0.14, G:0.18, T:0.33
Consensus pattern (25 bp):
TAGTATATACTGAAACTACTATAGG
Found at i:24333467 original size:41 final size:41
Alignment explanation
Indices: 24333422--24333539 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
24333412 TGAAAGATAA
24333422 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
24333463 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
24333493 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
24333534 ATGTAG
1 ATGTAG
24333540 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:24333478 original size:71 final size:71
Alignment explanation
Indices: 24333390--24333553 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
24333380 GAGATGTATC
24333390 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
24333455 AGGACA
66 AGGACA
24333461 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
24333526 AGGACA
66 AGGACA
24333532 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
24333554 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:24343229 original size:37 final size:37
Alignment explanation
Indices: 24343170--24343278 Score: 191
Period size: 37 Copynumber: 2.9 Consensus size: 37
24343160 AGCTCAGACG
* *
24343170 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
24343207 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
24343244 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
24343279 ATATATTTCC
Statistics
Matches: 69, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 69 1.00
ACGTcount: A:0.27, C:0.31, G:0.19, T:0.23
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:24343482 original size:50 final size:50
Alignment explanation
Indices: 24343428--24343751 Score: 341
Period size: 48 Copynumber: 6.7 Consensus size: 50
24343418 CATCGCCTAC
* ** *
24343428 ATATTTCACACTAACCATTCGGCTTTACCACATATACATATCTCATATAT
1 ATATTTCACATTGGCCATTCGGCTTTACCACATATGCATATCTCATATAT
*
24343478 ATATTTCACATTGACCATTCGGCTTTACCACATATGCATATCTCATAT-T
1 ATATTTCACATTGGCCATTCGGCTTTACCACATATGCATATCTCATATAT
* * * * *
24343527 -CA--CCACATTGGCCATTCGGCCTTATCACACATATGCAT-GCTCACAT-T
1 ATATTTCACATTGGCCATTCGGCTTTA-C-CACATATGCATATCTCATATAT
* * *
24343574 -CA--TCACATTGGCCATTCGGCCTTATCACATATGCATATCTCATATAT
1 ATATTTCACATTGGCCATTCGGCTTTACCACATATGCATATCTCATATAT
* * *
24343621 ATATTTCACATTGACCATTCAGCTTTACCACATATGCATATCTC--ATAC
1 ATATTTCACATTGGCCATTCGGCTTTACCACATATGCATATCTCATATAT
* * * *
24343669 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATTTCTCATACAT
1 ATATTTCACATTGGCCATTCGGCTTTACCACATATGCATATCTCATATAT
* *
24343719 -T-TTTCACATTAGCCATTAGGCTTTACCACATAT
1 ATATTTCACATTGGCCATTCGGCTTTACCACATAT
24343752 ATGCATGTTC
Statistics
Matches: 238, Mismatches: 27, Indels: 20
0.84 0.09 0.07
Matches are distributed among these distances:
45 11 0.05
46 25 0.11
47 32 0.13
48 86 0.36
49 2 0.01
50 82 0.34
ACGTcount: A:0.29, C:0.27, G:0.08, T:0.35
Consensus pattern (50 bp):
ATATTTCACATTGGCCATTCGGCTTTACCACATATGCATATCTCATATAT
Found at i:24343582 original size:47 final size:46
Alignment explanation
Indices: 24343483--24343915 Score: 347
Period size: 47 Copynumber: 9.1 Consensus size: 46
24343473 TATATATATT
* * * *
24343483 TCACATTGACCATTCGGCTTTA-CCACATATGCATATCTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCCACATATGCAT-GCTCACATTCA
*
24343529 CCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATC-CACATATGCATGCTCACATTCA
* * *
24343576 TCACATTGGCCATTCGGCCTTAT-CACATATGCATATCTCATATATATA
1 TCACATTGGCCATTCGGCCTTATCCACATATGCAT-GCTCACAT-T-CA
* * * * *
24343624 TTTCACATTGACCATTCAGCTTTA-CCACATATGCATATCTCATACATAT-T
1 --TCACATTGGCCATTCGGCCTTATCCACATATGCAT-GCTC--ACAT-TCA
* * * * **
24343674 TCACATTAGCCATTCGGCTTTA-CCACATATACATTTCTCATACATTTT
1 TCACATTGGCCATTCGGCCTTATCCACATATGCA-TGCTC--ACATTCA
* * * * *
24343722 TCACATTAGCCATTAGGCTTTA-CCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCCAC--ATATGCATGCTCACATTCA
* *
24343769 CCACATTGGCCATTCGGCCTTATCATACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATC-CACATATGCATGCTCACATTCA
* * * *
24343816 TCACATTGGCCATTCGACCTTATGACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTAT-CCACATATGCATGCTCACATTCA
* ***
24343863 TCACATTGGCCATTCGGCCTTATCTCATATATGCACATTCACATTCA
1 TCACATTGGCCATTCGGCCTTATC-CACATATGCATGCTCACATTCA
24343910 TCACAT
1 TCACAT
24343916 AAAATCCTAA
Statistics
Matches: 327, Mismatches: 42, Indels: 35
0.81 0.10 0.09
Matches are distributed among these distances:
45 11 0.03
46 25 0.08
47 161 0.49
48 78 0.24
49 6 0.02
50 41 0.13
52 5 0.02
ACGTcount: A:0.28, C:0.28, G:0.10, T:0.34
Consensus pattern (46 bp):
TCACATTGGCCATTCGGCCTTATCCACATATGCATGCTCACATTCA
Found at i:24343611 original size:143 final size:143
Alignment explanation
Indices: 24343442--24343884 Score: 490
Period size: 143 Copynumber: 3.1 Consensus size: 143
24343432 TTCACACTAA
* *
24343442 CCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATTGACCATTCGGCTTTACC
1 CCATTCGGCCTTACCACATATGCATATCTCATATATATATTTCACATTGACCATTCGGCTTTACC
*
24343507 ACATATGCATATCTCATATTCACCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACA
66 ACATATGCATATCTCATATTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACA
24343572 TTCATCACATTGG
131 TTCATCACATTGG
* *
24343585 CCATTCGGCCTTATCACATATGCATATCTCATATATATATTTCACATTGACCATTCAGCTTTACC
1 CCATTCGGCCTTACCACATATGCATATCTCATATATATATTTCACATTGACCATTCGGCTTTACC
* * * * *
24343650 ACATATGCATATCTCATACATAT-TTCACATTAGCCATTCGGCTTTA-C-CACATATACATTTCT
66 ACATATGCATATCTCAT--AT-TCATCACATTGGCCATTCGGCCTTATCACACATATGCA-TGCT
** *
24343712 CATACATTTTTCACATTAG
127 C--ACATTCATCACATTGG
* * * * * * *
24343731 CCATTAGGCTTTACCACATATATGCATGT-TCATAT-T-CA--CCACATTGGCCATTCGGCCTTA
1 CCATTCGGCCTTACCAC--ATATGCATATCTCATATATATATTTCACATTGACCATTCGGCTTTA
* * * * * * *
24343791 TCATACATATGCAT-GCTCACATTCATCACATTGGCCATTCGACCTTATGACATATATGCATGTT
64 -C-CACATATGCATATCTCATATTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGCT
24343855 CACATTCATCACATTGG
127 CACATTCATCACATTGG
24343872 CCATTCGGCCTTA
1 CCATTCGGCCTTA
24343885 TCTCATATAT
Statistics
Matches: 248, Mismatches: 39, Indels: 28
0.79 0.12 0.09
Matches are distributed among these distances:
141 25 0.10
142 21 0.08
143 108 0.44
144 18 0.07
145 32 0.13
146 29 0.12
147 6 0.02
148 9 0.04
ACGTcount: A:0.28, C:0.28, G:0.10, T:0.35
Consensus pattern (143 bp):
CCATTCGGCCTTACCACATATGCATATCTCATATATATATTTCACATTGACCATTCGGCTTTACC
ACATATGCATATCTCATATTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACA
TTCATCACATTGG
Found at i:24343757 original size:193 final size:193
Alignment explanation
Indices: 24343428--24343804 Score: 526
Period size: 193 Copynumber: 1.9 Consensus size: 193
24343418 CATCGCCTAC
* *
24343428 ATATTTCACACTAACCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATTGAC
1 ATATTTCACACTAACCATTCAGCTTTACCACATATACATATCTCA-ATACATATTTCACATTGAC
* * * *
24343493 CATTCGGCTTTACCACATATGCATATCTCATATTCACCACATTGGCCATTCGGCCTTATCACACA
65 CATTCGGCTTTACCACATATACATATCTCATATTCACCACATTAGCCATTAGGCCTTACCACACA
*
24343558 TATGCATGCTCACATTCATCACATTGGCCATTCGGCCTTATC-ACATATGCATATCTCATATAT
130 TATGCATGCTCACATTCACCACATTGGCCATTCGGCCTTATCAACATATGCATATCTCATATAT
* * *
24343621 ATATTTCACATTGACCATTCAGCTTTACCACATATGCATATCTC-ATACATATTTCACATT-AGC
1 ATATTTCACACTAACCATTCAGCTTTACCACATATACATATCTCAATACATATTTCACATTGA-C
* *** *
24343684 CATTCGGCTTTACCACATATACATTTCTCATACATTTTTCACATTAGCCATTAGGCTTTACCACA
65 CATTCGGCTTTACCACATATACATATCTCAT--ATTCACCACATTAGCCATTAGGCCTTACCACA
* * *
24343749 TATATGCATGTTCATATTCACCACATTGGCCATTCGGCCTTATCATACATATGCAT
128 CATATGCATGCTCACATTCACCACATTGGCCATTCGGCCTTATCA-ACATATGCAT
24343805 GCTCACATTC
Statistics
Matches: 161, Mismatches: 18, Indels: 8
0.86 0.10 0.04
Matches are distributed among these distances:
190 1 0.01
191 45 0.28
193 105 0.65
195 10 0.06
ACGTcount: A:0.29, C:0.27, G:0.09, T:0.35
Consensus pattern (193 bp):
ATATTTCACACTAACCATTCAGCTTTACCACATATACATATCTCAATACATATTTCACATTGACC
ATTCGGCTTTACCACATATACATATCTCATATTCACCACATTAGCCATTAGGCCTTACCACACAT
ATGCATGCTCACATTCACCACATTGGCCATTCGGCCTTATCAACATATGCATATCTCATATAT
Found at i:24356466 original size:40 final size:40
Alignment explanation
Indices: 24356421--24356588 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
24356411 CGGAATATAA
24356421 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
24356461 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
24356501 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * * *
24356541 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
24356581 CCGGATAT
1 CCGGATAT
24356589 TATTCAATTT
Statistics
Matches: 107, Mismatches: 20, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 106 0.99
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:24358909 original size:37 final size:37
Alignment explanation
Indices: 24358855--24358932 Score: 140
Period size: 37 Copynumber: 2.1 Consensus size: 37
24358845 CAATGAGATT
*
24358855 CATA-TACATAACATCATCTACTACTTAGGCATTATA
1 CATACTACATAACATCATCTACCACTTAGGCATTATA
24358891 CATACTACATAACATCATCTACCACTTAGGCATTATA
1 CATACTACATAACATCATCTACCACTTAGGCATTATA
24358928 CATAC
1 CATAC
24358933 CTATAGCTTC
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
36 4 0.10
37 36 0.90
ACGTcount: A:0.38, C:0.26, G:0.05, T:0.31
Consensus pattern (37 bp):
CATACTACATAACATCATCTACCACTTAGGCATTATA
Found at i:24370509 original size:40 final size:40
Alignment explanation
Indices: 24370464--24370631 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
24370454 CGGAATATAA
24370464 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
24370504 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
24370544 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * * *
24370584 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
24370624 CCGGATAT
1 CCGGATAT
24370632 CATTCAATTT
Statistics
Matches: 107, Mismatches: 20, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 106 0.99
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:24376733 original size:40 final size:40
Alignment explanation
Indices: 24376667--24376833 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
24376657 AAATTGAATG
* * *
24376667 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
24376706 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
24376746 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
24376786 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
24376826 ATATCCGG
1 ATATCCGG
24376834 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:24384720 original size:40 final size:40
Alignment explanation
Indices: 24384654--24384820 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
24384644 AAATTGAATG
* * *
24384654 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
24384693 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
24384733 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
24384773 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
24384813 ATATCCGG
1 ATATCCGG
24384821 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:24392855 original size:28 final size:28
Alignment explanation
Indices: 24392790--24392888 Score: 119
Period size: 28 Copynumber: 3.5 Consensus size: 28
24392780 CATGAGATTG
* * *
24392790 GCACTAAGTGTGCGGGTTCAAATTGTATA
1 GCACTAAGTGTGCGAGTT-AGATTATATA
*
24392819 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTAGATTATATA
* *
24392847 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCGAGTTAGATTATAT-A
24392875 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
24392889 GGCTTATTAT
Statistics
Matches: 63, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
27 1 0.02
28 45 0.71
29 17 0.27
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTAGATTATATA
Found at i:24403006 original size:16 final size:16
Alignment explanation
Indices: 24402985--24403015 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
24402975 ATTTCGTTTT
24402985 CTAATTTCCAAATTAC
1 CTAATTTCCAAATTAC
24403001 CTAATTTCCAAATTA
1 CTAATTTCCAAATTA
24403016 ACCTTTTAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.39, C:0.23, G:0.00, T:0.39
Consensus pattern (16 bp):
CTAATTTCCAAATTAC
Found at i:24403583 original size:43 final size:42
Alignment explanation
Indices: 24403536--24403624 Score: 133
Period size: 43 Copynumber: 2.1 Consensus size: 42
24403526 TGGTCTTATT
24403536 CTAGACTAAAAGATACCACCTAAGATTACCTCTCAGTCTCATC
1 CTAGACTAAAAGATACCACCTAAGATTACCTCTCAGTCTCA-C
* * * *
24403579 CTAGACTGAAAGATATCACCTAAGGTTACCTCTCGGTCTCAC
1 CTAGACTAAAAGATACCACCTAAGATTACCTCTCAGTCTCAC
24403621 CTAG
1 CTAG
24403625 GCATATATAC
Statistics
Matches: 42, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
42 5 0.12
43 37 0.88
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.26
Consensus pattern (42 bp):
CTAGACTAAAAGATACCACCTAAGATTACCTCTCAGTCTCAC
Found at i:24403674 original size:27 final size:27
Alignment explanation
Indices: 24403605--24403674 Score: 104
Period size: 27 Copynumber: 2.6 Consensus size: 27
24403595 CACCTAAGGT
* *
24403605 TACCTCTCGGTCTCACCTAGGCATATA
1 TACCTCTCAGTCTCATCTAGGCATATA
*
24403632 TACCTATCAGTCTCATCTAGGCATATA
1 TACCTCTCAGTCTCATCTAGGCATATA
*
24403659 TACCTCCCAGTCTCAT
1 TACCTCTCAGTCTCAT
24403675 TACTCGAATG
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 38 1.00
ACGTcount: A:0.24, C:0.33, G:0.11, T:0.31
Consensus pattern (27 bp):
TACCTCTCAGTCTCATCTAGGCATATA
Found at i:24413574 original size:49 final size:47
Alignment explanation
Indices: 24413459--24413632 Score: 174
Period size: 49 Copynumber: 3.6 Consensus size: 47
24413449 TGTGTTAGTC
* * *
24413459 TAAGACCATGTCTGGGACATGGCAT-TGGCACAGATATGTGAGAGCTAGTG
1 TAAGACCATGTCTGGGACATGGCATCGGGCTC-GAT-T-TGATAGC-AGTG
*
24413509 TAAGACCATGTTTGGGACATGGCATCGGGCTCGATTTCGATAGTCAGTG
1 TAAGACCATGTCTGGGACATGGCATCGGGCTCGATTT-GATAG-CAGTG
* * *
24413558 TAAGACCATGTCTGGGACATGGCATC-GACTTGA-TGGATGAGCCAGTG
1 TAAGACCATGTCTGGGACATGGCATCGGGCTCGATTTGAT-AG-CAGTG
* *
24413605 TAAGACCATGTTTGGGATATGGCATCGG
1 TAAGACCATGTCTGGGACATGGCATCGG
24413633 CATTATACCC
Statistics
Matches: 108, Mismatches: 11, Indels: 12
0.82 0.08 0.09
Matches are distributed among these distances:
46 3 0.03
47 32 0.30
48 7 0.06
49 34 0.31
50 28 0.26
51 4 0.04
ACGTcount: A:0.25, C:0.17, G:0.32, T:0.26
Consensus pattern (47 bp):
TAAGACCATGTCTGGGACATGGCATCGGGCTCGATTTGATAGCAGTG
Found at i:24419272 original size:110 final size:109
Alignment explanation
Indices: 24419145--24419347 Score: 277
Period size: 110 Copynumber: 1.9 Consensus size: 109
24419135 AAAAATTACT
* *
24419145 CTCCTCTCCTTCCAAAATCACAAAATTAAACAAATAGTAAGT-AACACAAAACCCTAAACAAATA
1 CTCCTCTCCTTCCAAAATCACAAAATCAAACAAATAATAAGTAAAC-CAAAACCCTAAACAAATA
*
24419209 ACTAACAATTACAAAAAATTACCTTT-AAAATAAAATTTATTGTTGC
65 AATAACAATT--AAAAAATTACCTTTCAAAATAAAATTTATTGTTGC
* * *
24419255 CTCCTC-CCTTTCTAAAATCACAAAATCAAATAAATAATAAGTAAACCAAAATCCTAAACAAATA
1 CTCCTCTCC-TTCCAAAATCACAAAATCAAACAAATAATAAGTAAACCAAAACCCTAAACAAATA
* *
24419319 AATAATACTTAAAAAATTACCTTTCAAAA
65 AATAACAATTAAAAAATTACCTTTCAAAA
24419348 CCACAAAATT
Statistics
Matches: 82, Mismatches: 8, Indels: 7
0.85 0.08 0.07
Matches are distributed among these distances:
108 14 0.17
109 6 0.07
110 59 0.72
111 3 0.04
ACGTcount: A:0.51, C:0.21, G:0.02, T:0.26
Consensus pattern (109 bp):
CTCCTCTCCTTCCAAAATCACAAAATCAAACAAATAATAAGTAAACCAAAACCCTAAACAAATAA
ATAACAATTAAAAAATTACCTTTCAAAATAAAATTTATTGTTGC
Found at i:24424504 original size:30 final size:29
Alignment explanation
Indices: 24424465--24424524 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 29
24424455 TATACAAGTT
24424465 TCTAATTTTAAAATA-CAAATGAAAAATGA
1 TCTAATTTTAAAA-AGCAAATGAAAAATGA
* *
24424494 TCTAAGTTTTAAAAAGTAAATGAAATATGA
1 TCTAA-TTTTAAAAAGCAAATGAAAAATGA
24424524 T
1 T
24424525 AATGTTTTAT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
29 6 0.22
30 21 0.78
ACGTcount: A:0.52, C:0.05, G:0.10, T:0.33
Consensus pattern (29 bp):
TCTAATTTTAAAAAGCAAATGAAAAATGA
Found at i:24434316 original size:22 final size:21
Alignment explanation
Indices: 24434267--24434336 Score: 63
Period size: 22 Copynumber: 3.2 Consensus size: 21
24434257 CTTTTGACTG
24434267 ATATTTTTA-TTAA-ATAATAA
1 ATATTTTTATTTAATATAAT-A
24434287 ATTAATTTTTATTTAATAGTAATA
1 A-T-ATTTTTATTTAATA-TAATA
**
24434311 ATATTTTATAAGTAATATAATA
1 ATATTTT-TATTTAATATAATA
24434333 ATAT
1 ATAT
24434337 ATATAAAAAG
Statistics
Matches: 42, Mismatches: 2, Indels: 10
0.78 0.04 0.19
Matches are distributed among these distances:
20 1 0.02
21 1 0.02
22 21 0.50
23 12 0.29
24 3 0.07
25 4 0.10
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (21 bp):
ATATTTTTATTTAATATAATA
Found at i:24434914 original size:55 final size:55
Alignment explanation
Indices: 24434853--24434963 Score: 152
Period size: 55 Copynumber: 2.0 Consensus size: 55
24434843 TCATCTTAAT
* ** *
24434853 TGTTGGAATACTACTTCTTTTGAA-CATATTTTTTATATGTTTAAATCGATTGTCA
1 TGTTGGAATACTACTTCTTTTGAATC-GATTAATTATATGTTTAAATCGACTGTCA
**
24434908 TGTTGGAATACTGTTTCTTTTGAATCGATTAATTATATGTTTAAATCGACTGTCA
1 TGTTGGAATACTACTTCTTTTGAATCGATTAATTATATGTTTAAATCGACTGTCA
24434963 T
1 T
24434964 ACTTCTAATT
Statistics
Matches: 49, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
55 48 0.98
56 1 0.02
ACGTcount: A:0.27, C:0.11, G:0.14, T:0.48
Consensus pattern (55 bp):
TGTTGGAATACTACTTCTTTTGAATCGATTAATTATATGTTTAAATCGACTGTCA
Found at i:24435044 original size:21 final size:21
Alignment explanation
Indices: 24435015--24435056 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
24435005 GAGAAGTGCC
*
24435015 AATACCTAGGTATGAGATTCT
1 AATAACTAGGTATGAGATTCT
*
24435036 AATAACTAGGTATGAGTTTCT
1 AATAACTAGGTATGAGATTCT
24435057 GATACCTCAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.33, C:0.12, G:0.19, T:0.36
Consensus pattern (21 bp):
AATAACTAGGTATGAGATTCT
Found at i:24435690 original size:41 final size:41
Alignment explanation
Indices: 24435643--24435725 Score: 166
Period size: 41 Copynumber: 2.0 Consensus size: 41
24435633 CATGTAGAGT
24435643 AAGTTTTGAATGTGTATAGTATTGGAAGCTGACTAAATATA
1 AAGTTTTGAATGTGTATAGTATTGGAAGCTGACTAAATATA
24435684 AAGTTTTGAATGTGTATAGTATTGGAAGCTGACTAAATATA
1 AAGTTTTGAATGTGTATAGTATTGGAAGCTGACTAAATATA
24435725 A
1 A
24435726 GAATTCCTTG
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 42 1.00
ACGTcount: A:0.37, C:0.05, G:0.22, T:0.36
Consensus pattern (41 bp):
AAGTTTTGAATGTGTATAGTATTGGAAGCTGACTAAATATA
Found at i:24437153 original size:54 final size:54
Alignment explanation
Indices: 24437088--24437220 Score: 166
Period size: 54 Copynumber: 2.5 Consensus size: 54
24437078 ACATGTCGAA
*
24437088 AAATGGAATGCCTTTGTGGCATAATGGGAAAGAAAAACCTATATGGTTG-TTCTT
1 AAATGAAATGCCTTTGTGGCATAATGGGAAAGAAAAACCTATATGG-TGATTCTT
* * *
24437142 GAATGAAATGCCTTTGTGG-AGTAATGGGAAAGAAAAACCTCTGTGGTGATTCTT
1 AAATGAAATGCCTTTGTGGCA-TAATGGGAAAGAAAAACCTATATGGTGATTCTT
24437196 AAATGGACAA--CCTTTGTGGCATAAT
1 AAAT-GA-AATGCCTTTGTGGCATAAT
24437221 ATGAAGGAAA
Statistics
Matches: 69, Mismatches: 5, Indels: 10
0.82 0.06 0.12
Matches are distributed among these distances:
53 3 0.04
54 61 0.88
55 3 0.04
56 2 0.03
ACGTcount: A:0.33, C:0.12, G:0.25, T:0.30
Consensus pattern (54 bp):
AAATGAAATGCCTTTGTGGCATAATGGGAAAGAAAAACCTATATGGTGATTCTT
Found at i:24440243 original size:24 final size:24
Alignment explanation
Indices: 24440211--24440260 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
24440201 AACTCGCACA
24440211 ATTGCCTTCGGGCTTAGCCCGGAT
1 ATTGCCTTCGGGCTTAGCCCGGAT
24440235 ATTGCCTTCGGGCTTAGCCCGGAT
1 ATTGCCTTCGGGCTTAGCCCGGAT
24440259 AT
1 AT
24440261 CACAATTCGC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.14, C:0.28, G:0.28, T:0.30
Consensus pattern (24 bp):
ATTGCCTTCGGGCTTAGCCCGGAT
Found at i:24440273 original size:63 final size:64
Alignment explanation
Indices: 24440173--24440299 Score: 220
Period size: 63 Copynumber: 2.0 Consensus size: 64
24440163 CCCGCACAAA
*
24440173 TGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCCCGGATAT
1 TGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCCCAGATAT
* *
24440237 TGCCTTCGGG-CTTAGCCCGGATATCACAATTCGCACAATTGCCTTCGGGCTTAGCCCAGATAT
1 TGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCCCAGATAT
24440300 CACAATTCGC
Statistics
Matches: 60, Mismatches: 3, Indels: 1
0.94 0.05 0.02
Matches are distributed among these distances:
63 50 0.83
64 10 0.17
ACGTcount: A:0.21, C:0.31, G:0.22, T:0.26
Consensus pattern (64 bp):
TGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCCCAGATAT
Found at i:24440289 original size:39 final size:39
Alignment explanation
Indices: 24440235--24440312 Score: 147
Period size: 39 Copynumber: 2.0 Consensus size: 39
24440225 TAGCCCGGAT
*
24440235 ATTGCCTTCGGGCTTAGCCCGGATATCACAATTCGCACA
1 ATTGCCTTCGGGCTTAGCCCAGATATCACAATTCGCACA
24440274 ATTGCCTTCGGGCTTAGCCCAGATATCACAATTCGCACA
1 ATTGCCTTCGGGCTTAGCCCAGATATCACAATTCGCACA
24440313 TTCATTCACA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.24, C:0.31, G:0.19, T:0.26
Consensus pattern (39 bp):
ATTGCCTTCGGGCTTAGCCCAGATATCACAATTCGCACA
Found at i:24448158 original size:40 final size:40
Alignment explanation
Indices: 24448100--24448280 Score: 178
Period size: 39 Copynumber: 4.7 Consensus size: 40
24448090 CGTTCAAACA
* * ***
24448100 CCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATCACAACCCGCACAAATG
* * *
24448140 CCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGATATCACAACCCGCACAAATG
** * *
24448180 CCTTCGGG-CTTAGCCCGGATAT---TGCTCGC-CAATTG
1 CCTTCGGGACTTAGCCCGGATATCACAACCCGCACAAATG
** *
24448215 CCTTCGGG-CTTAGCCCGGATATCACAATTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGATATCACAACCCGCACAAATG
24448254 CCTTCGGG-CTTAGCCCGGATATCACAA
1 CCTTCGGGACTTAGCCCGGATATCACAA
24448281 TTCGCACATT
Statistics
Matches: 123, Mismatches: 14, Indels: 9
0.84 0.10 0.06
Matches are distributed among these distances:
35 28 0.23
36 5 0.04
38 4 0.03
39 46 0.37
40 40 0.33
ACGTcount: A:0.23, C:0.31, G:0.22, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATCACAACCCGCACAAATG
Found at i:24448263 original size:39 final size:39
Alignment explanation
Indices: 24448130--24448288 Score: 236
Period size: 39 Copynumber: 4.2 Consensus size: 39
24448120 TATGGTAACC
* * *
24448130 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAATT
**
24448170 CGCACAATTGCCTTCGGGCTTAGCCCGGATATTGC---T
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
24448206 CGC-CAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
24448244 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
24448283 CGCACA
1 CGCACA
24448289 TTCATTCACA
Statistics
Matches: 109, Mismatches: 6, Indels: 9
0.88 0.05 0.07
Matches are distributed among these distances:
35 29 0.27
36 4 0.04
38 4 0.04
39 55 0.50
40 17 0.16
ACGTcount: A:0.23, C:0.32, G:0.21, T:0.24
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
Found at i:24449886 original size:77 final size:77
Alignment explanation
Indices: 24449793--24449945 Score: 288
Period size: 77 Copynumber: 2.0 Consensus size: 77
24449783 CAAAATAAAT
24449793 TTTAAATTATTTTTATGCCTCGATTTTGTGGTCCCGAAACCACATCCCGACTAGGGTCAATTTTG
1 TTTAAATTATTTTTATGCCTCGATTTTGTGGTCCCGAAACCACATCCCGACTAGGGTCAATTTTG
24449858 GGCTGTCACAAC
66 GGCTGTCACAAC
* *
24449870 TTTAAATTATTTTTATGCCTCGATTTTGTGGTCCCGAAATCACTTCCCGACTAGGGTCAATTTTG
1 TTTAAATTATTTTTATGCCTCGATTTTGTGGTCCCGAAACCACATCCCGACTAGGGTCAATTTTG
24449935 GGCTGTCACAA
66 GGCTGTCACAA
24449946 AATGGATCCA
Statistics
Matches: 74, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
77 74 1.00
ACGTcount: A:0.23, C:0.22, G:0.18, T:0.37
Consensus pattern (77 bp):
TTTAAATTATTTTTATGCCTCGATTTTGTGGTCCCGAAACCACATCCCGACTAGGGTCAATTTTG
GGCTGTCACAAC
Found at i:24451297 original size:22 final size:21
Alignment explanation
Indices: 24451272--24451314 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
24451262 AAAACCCTAG
*
24451272 AAAAATAC-AGAGAAAAACTAA
1 AAAAAAACTAGAG-AAAACTAA
*
24451293 AAAAAACCTAGAGAAAACTAA
1 AAAAAAACTAGAGAAAACTAA
24451314 A
1 A
24451315 CTTAAACCTA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 15 0.79
22 4 0.21
ACGTcount: A:0.70, C:0.12, G:0.09, T:0.09
Consensus pattern (21 bp):
AAAAAAACTAGAGAAAACTAA
Found at i:24455102 original size:50 final size:50
Alignment explanation
Indices: 24455032--24455204 Score: 151
Period size: 50 Copynumber: 3.6 Consensus size: 50
24455022 ACATCAAGGT
* * * *
24455032 CGATGCCATATCCTAGACATGGTCTTACATTGACTCTCATATATCAAG-GC
1 CGATGCCATGTCCCAAACATGGTCTTACACTGACTCTCATATATC-AGTGC
* * * * * * *
24455082 CGATGCTATGTTCCAAACATGGTCCTACACTGGCTCTCATCTGTCAGTGT
1 CGATGCCATGTCCCAAACATGGTCTTACACTGACTCTCATATATCAGTGC
* * *
24455132 CGATGCCATGTCCCAGACATGGTCTTACACTGA----CACATATCA-AGC
1 CGATGCCATGTCCCAAACATGGTCTTACACTGACTCTCATATATCAGTGC
* *
24455177 CGATGCCATGTCCCAGACATAGTCTTAC
1 CGATGCCATGTCCCAAACATGGTCTTAC
24455205 TGTAACACCC
Statistics
Matches: 100, Mismatches: 22, Indels: 7
0.78 0.17 0.05
Matches are distributed among these distances:
45 28 0.28
46 6 0.06
49 2 0.02
50 64 0.64
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.28
Consensus pattern (50 bp):
CGATGCCATGTCCCAAACATGGTCTTACACTGACTCTCATATATCAGTGC
Found at i:24462777 original size:71 final size:71
Alignment explanation
Indices: 24462691--24462854 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
24462681 CGATTTGTCT
24462691 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
24462756 CTTTCA
66 CTTTCA
24462762 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
24462827 CTTTCA
66 CTTTCA
24462833 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
24462855 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:24462892 original size:71 final size:70
Alignment explanation
Indices: 24462691--24462888 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
24462681 CGATTTGTCT
* * * *
24462691 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
24462756 CTTTCA
65 CTTTCA
* * * *
24462762 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
24462827 CTTTCA
65 CTTTCA
* *
24462833 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
24462889 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:24470359 original size:71 final size:71
Alignment explanation
Indices: 24470273--24470436 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
24470263 CGATTTGTCT
24470273 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
24470338 CTTTCA
66 CTTTCA
24470344 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
24470409 CTTTCA
66 CTTTCA
24470415 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
24470437 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:24470474 original size:71 final size:70
Alignment explanation
Indices: 24470273--24470470 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
24470263 CGATTTGTCT
* * * *
24470273 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
24470338 CTTTCA
65 CTTTCA
* * * *
24470344 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
24470409 CTTTCA
65 CTTTCA
* *
24470415 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
24470471 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:24472385 original size:29 final size:29
Alignment explanation
Indices: 24472343--24472398 Score: 112
Period size: 29 Copynumber: 1.9 Consensus size: 29
24472333 ACTTACTTGC
24472343 AAAGGCTTAGAGTTGCTAAAATTTTGAGA
1 AAAGGCTTAGAGTTGCTAAAATTTTGAGA
24472372 AAAGGCTTAGAGTTGCTAAAATTTTGA
1 AAAGGCTTAGAGTTGCTAAAATTTTGA
24472399 AGCTCAAAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.38, C:0.07, G:0.23, T:0.32
Consensus pattern (29 bp):
AAAGGCTTAGAGTTGCTAAAATTTTGAGA
Found at i:24473214 original size:46 final size:45
Alignment explanation
Indices: 24473160--24473326 Score: 158
Period size: 46 Copynumber: 3.6 Consensus size: 45
24473150 CTTGTAGCCG
*
24473160 ATGCATGTCCTAGACATGTCTTACACTGACTTACGTCTCGAGGCCA
1 ATGCATGTCCCAGACATGTCTTACACTGACTTAC-TCTCGAGGCCA
* * ** *
24473206 ATGCATGTCCCAGACATGTCTTACACTAGCACTCA-TCTCAATACCG
1 ATGCATGTCCCAGACATGTCTTACACT-G-ACTTACTCTCGAGGCCA
* * ** *
24473252 ATGCCATGTCCCTGACATGATCTTACACTGGCTCTCACAAT-GTGGCCA
1 ATG-CATGTCCCAGACATG-TCTTACACTGACT-T-ACTCTCGAGGCCA
24473300 ATGCATGTCCCAGACATGTCTTACACT
1 ATGCATGTCCCAGACATGTCTTACACT
24473327 AGCTCACAAT
Statistics
Matches: 97, Mismatches: 17, Indels: 14
0.76 0.13 0.11
Matches are distributed among these distances:
46 47 0.48
47 30 0.31
48 19 0.20
49 1 0.01
ACGTcount: A:0.25, C:0.31, G:0.17, T:0.28
Consensus pattern (45 bp):
ATGCATGTCCCAGACATGTCTTACACTGACTTACTCTCGAGGCCA
Found at i:24473679 original size:23 final size:23
Alignment explanation
Indices: 24473649--24473696 Score: 96
Period size: 23 Copynumber: 2.1 Consensus size: 23
24473639 CATACTTAAC
24473649 ATCTATTTTACAACTCATGCAAT
1 ATCTATTTTACAACTCATGCAAT
24473672 ATCTATTTTACAACTCATGCAAT
1 ATCTATTTTACAACTCATGCAAT
24473695 AT
1 AT
24473697 AGTCCTTTTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.35, C:0.21, G:0.04, T:0.40
Consensus pattern (23 bp):
ATCTATTTTACAACTCATGCAAT
Found at i:24478669 original size:17 final size:17
Alignment explanation
Indices: 24478647--24478701 Score: 65
Period size: 19 Copynumber: 3.1 Consensus size: 17
24478637 ATCTGACAAA
*
24478647 GCCTGATAAGTGAAAAT
1 GCCTGATAAATGAAAAT
*
24478664 GCCTGAAATAAATGATAAT
1 GCCTG--ATAAATGAAAAT
24478683 GCCTGATAAATGATAAAT
1 GCCTGATAAATGA-AAAT
24478701 G
1 G
24478702 ATAAAAAAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
17 13 0.41
18 4 0.12
19 15 0.47
ACGTcount: A:0.44, C:0.11, G:0.20, T:0.25
Consensus pattern (17 bp):
GCCTGATAAATGAAAAT
Found at i:24478683 original size:19 final size:17
Alignment explanation
Indices: 24478647--24478698 Score: 68
Period size: 17 Copynumber: 2.9 Consensus size: 17
24478637 ATCTGACAAA
* *
24478647 GCCTGATAAGTGAAAAT
1 GCCTGATAAATGATAAT
24478664 GCCTGAAATAAATGATAAT
1 GCCTG--ATAAATGATAAT
24478683 GCCTGATAAATGATAA
1 GCCTGATAAATGATAA
24478699 ATGATAAAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
17 16 0.52
19 15 0.48
ACGTcount: A:0.44, C:0.12, G:0.19, T:0.25
Consensus pattern (17 bp):
GCCTGATAAATGATAAT
Found at i:24484052 original size:21 final size:20
Alignment explanation
Indices: 24484028--24484076 Score: 71
Period size: 21 Copynumber: 2.4 Consensus size: 20
24484018 AAAACAGGGC
24484028 ACACGTCCGTATGGAAGGGTA
1 ACACG-CCGTATGGAAGGGTA
*
24484049 ACACGCCTGTATGGGAGGGTA
1 ACACGCC-GTATGGAAGGGTA
24484070 ACACGCC
1 ACACGCC
24484077 CGTGCCCCAC
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
20 2 0.08
21 24 0.92
ACGTcount: A:0.27, C:0.24, G:0.33, T:0.16
Consensus pattern (20 bp):
ACACGCCGTATGGAAGGGTA
Found at i:24485301 original size:46 final size:46
Alignment explanation
Indices: 24485218--24485339 Score: 120
Period size: 46 Copynumber: 2.6 Consensus size: 46
24485208 CTCTTAGCCG
** * * * *
24485218 ATGCATGTCGTAGACATGCCTTACACTGGCTTACGTCTCGAGGACA
1 ATGCATGTCCCAGACATGTCTTACACTGCCCTACGTCTCAAGGACA
* * *
24485264 ATGCATGTCCCAGACATGTCTTACACTAGCCCT-CGTCTCAATGTCG
1 ATGCATGTCCCAGACATGTCTTACACT-GCCCTACGTCTCAAGGACA
*
24485310 ATGCCATCTCCCAGACATGGTCTTACACTG
1 ATG-CATGTCCCAGACAT-GTCTTACACTG
24485340 GCTCTCATAA
Statistics
Matches: 63, Mismatches: 10, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
46 36 0.57
47 17 0.27
48 10 0.16
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.27
Consensus pattern (46 bp):
ATGCATGTCCCAGACATGTCTTACACTGCCCTACGTCTCAAGGACA
Found at i:24492821 original size:46 final size:46
Alignment explanation
Indices: 24492771--24492943 Score: 190
Period size: 46 Copynumber: 3.7 Consensus size: 46
24492761 TCATCTCTTA
*
24492771 GCCGATGCATGTCCCAGACATGTCTTATACT-GTCTTATGTCTCGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGTCTTAT-TCTCGAG
* * * *
24492817 GCCGATGCATGTGCCAGACATGTCTTACACTAGCCTTCA-TCTCAAT
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGTCTT-ATTCTCGAG
* * ** *
24492863 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAAT-GTG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAG-TCTTATTCTCGAG
24492911 GCCGATGCATGTCCCAGACATGTCTTACACTAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTAG
24492944 CTCACACAAG
Statistics
Matches: 106, Mismatches: 15, Indels: 12
0.80 0.11 0.09
Matches are distributed among these distances:
46 52 0.49
47 31 0.29
48 20 0.19
49 3 0.03
ACGTcount: A:0.22, C:0.29, G:0.21, T:0.28
Consensus pattern (46 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTAGTCTTATTCTCGAG
Found at i:24496872 original size:18 final size:18
Alignment explanation
Indices: 24496849--24496889 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
24496839 AGTCAGTCAA
24496849 CAGTAATAATCAATTAAT
1 CAGTAATAATCAATTAAT
* * *
24496867 CAGTAATATTCATTTATT
1 CAGTAATAATCAATTAAT
24496885 CAGTA
1 CAGTA
24496890 TCGGTAGTTG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.41, C:0.12, G:0.07, T:0.39
Consensus pattern (18 bp):
CAGTAATAATCAATTAAT
Found at i:24502650 original size:40 final size:39
Alignment explanation
Indices: 24502606--24502787 Score: 238
Period size: 39 Copynumber: 4.6 Consensus size: 39
24502596 GTTCAAAACA
* * ** * *
24502606 CCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAATG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
* *
24502646 CCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
*
24502686 CCTTCGGGCTTAGCCCGGATATCATAGCTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
* * *
24502725 CCTTCGGGCTTAGCCCGGATATCACAATTCACACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
24502764 CCTTCGGGCTTAGCCCGGATATCA
1 CCTTCGGGCTTAGCCCGGATATCA
24502788 CTCGAACATT
Statistics
Matches: 127, Mismatches: 15, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
39 87 0.69
40 40 0.31
ACGTcount: A:0.24, C:0.31, G:0.21, T:0.24
Consensus pattern (39 bp):
CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
Found at i:24502717 original size:39 final size:39
Alignment explanation
Indices: 24502636--24502788 Score: 243
Period size: 39 Copynumber: 3.9 Consensus size: 39
24502626 TATGGTAACC
* *
24502636 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
24502676 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
24502715 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
24502754 CACACAATTGCCTTCGGGCTTAGCCCGGATATCAC
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
24502789 TCGAACATTC
Statistics
Matches: 105, Mismatches: 8, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 88 0.84
40 17 0.16
ACGTcount: A:0.24, C:0.32, G:0.20, T:0.24
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:24510060 original size:40 final size:39
Alignment explanation
Indices: 24510016--24510197 Score: 247
Period size: 39 Copynumber: 4.6 Consensus size: 39
24510006 GTTCAAAACA
* * ** * *
24510016 CCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAATG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
* *
24510056 CCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
*
24510096 CCTTCGGGCTTAGCCCGGATATCATAGCTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
* *
24510135 CCTTCGGGCTTAGCCCGGATATCACAATTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
24510174 CCTTCGGGCTTAGCCCGGATATCA
1 CCTTCGGGCTTAGCCCGGATATCA
24510198 CTCGAACATT
Statistics
Matches: 128, Mismatches: 14, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
39 88 0.69
40 40 0.31
ACGTcount: A:0.23, C:0.31, G:0.22, T:0.24
Consensus pattern (39 bp):
CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
Found at i:24510127 original size:39 final size:39
Alignment explanation
Indices: 24510046--24510198 Score: 252
Period size: 39 Copynumber: 3.9 Consensus size: 39
24510036 TATGGTAACC
* *
24510046 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
24510086 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
24510125 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
24510164 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
24510199 TCGAACATTC
Statistics
Matches: 106, Mismatches: 7, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
39 89 0.84
40 17 0.16
ACGTcount: A:0.24, C:0.32, G:0.21, T:0.24
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:24513478 original size:12 final size:12
Alignment explanation
Indices: 24513463--24513488 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
24513453 ACCGTAAGGG
24513463 TAACAGTAACAA
1 TAACAGTAACAA
24513475 TAACAGTAACAA
1 TAACAGTAACAA
24513487 TA
1 TA
24513489 GCGGTACATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.58, C:0.15, G:0.08, T:0.19
Consensus pattern (12 bp):
TAACAGTAACAA
Found at i:24518967 original size:39 final size:39
Alignment explanation
Indices: 24518924--24519075 Score: 250
Period size: 39 Copynumber: 3.9 Consensus size: 39
24518914 GTGCGAATTG
24518924 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
24518963 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
* *
24519002 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
* * *
24519041 TGATATCCGGGTTAAGTCCTGAAGGCATTTGTGCG
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCG
24519076 GGTTACCATA
Statistics
Matches: 107, Mismatches: 5, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
39 91 0.85
40 16 0.15
ACGTcount: A:0.24, C:0.21, G:0.32, T:0.24
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
Found at i:24542733 original size:22 final size:23
Alignment explanation
Indices: 24542711--24542762 Score: 65
Period size: 23 Copynumber: 2.3 Consensus size: 23
24542701 ATGTTGTTAC
24542711 TTTTATTTTAT-TTTAAGACTACT
1 TTTTATTTT-TCTTTAAGACTACT
24542734 TTTTATTTTTCTTTAAG-CTTA-T
1 TTTTATTTTTCTTTAAGAC-TACT
24542756 TTTTATT
1 TTTTATT
24542763 AGGTTTTATA
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
22 10 0.37
23 17 0.63
ACGTcount: A:0.21, C:0.08, G:0.04, T:0.67
Consensus pattern (23 bp):
TTTTATTTTTCTTTAAGACTACT
Found at i:24544110 original size:2 final size:2
Alignment explanation
Indices: 24544103--24544129 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
24544093 GAGACTAGTC
24544103 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
24544130 CATGTCATGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:24544195 original size:17 final size:16
Alignment explanation
Indices: 24544175--24544235 Score: 54
Period size: 17 Copynumber: 3.8 Consensus size: 16
24544165 TTATAAACAC
24544175 ATATCATTTATTTCATT
1 ATATCATTTATTTCA-T
*
24544192 ATATCA-ATATTTCAT
1 ATATCATTTATTTCAT
* * *
24544207 ATACCATATTATTCCAC
1 ATATCAT-TTATTTCAT
24544224 ATAT-ATTTATTT
1 ATATCATTTATTT
24544236 TCCTCCTCCT
Statistics
Matches: 35, Mismatches: 7, Indels: 6
0.73 0.15 0.12
Matches are distributed among these distances:
15 11 0.31
16 9 0.26
17 15 0.43
ACGTcount: A:0.34, C:0.15, G:0.00, T:0.51
Consensus pattern (16 bp):
ATATCATTTATTTCAT
Found at i:24552080 original size:48 final size:48
Alignment explanation
Indices: 24552014--24552192 Score: 175
Period size: 48 Copynumber: 3.7 Consensus size: 48
24552004 CTCAATATGT
* *
24552014 GAGCAAGTGGAAGACCATGTTTGGAACATGGCATCGACATTGTTATCA
1 GAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGACATTGTTATCA
* * * * *** **
24552062 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCAATATGT
1 GAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGACATTGTTATCA
* * *
24552110 GAGCTAGTTTAAGACCTTGTTTGGAACATGGCAT-TAGCATTGTTA-CAA
1 GAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGA-CATTGTTATC-A
*
24552158 GAGCTAGTGTAAGACCATGTCTAGG-ACATGGCATC
1 GAGCTAGTGTAAGACCATGT-TTGGAACATGGCATC
24552193 AGCATCTTAC
Statistics
Matches: 101, Mismatches: 26, Indels: 7
0.75 0.19 0.05
Matches are distributed among these distances:
48 98 0.97
49 3 0.03
ACGTcount: A:0.28, C:0.18, G:0.27, T:0.27
Consensus pattern (48 bp):
GAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGACATTGTTATCA
Found at i:24552161 original size:96 final size:96
Alignment explanation
Indices: 24551997--24552192 Score: 306
Period size: 96 Copynumber: 2.0 Consensus size: 96
24551987 GACCATGTCC
*
24551997 CATCGGCCTCAATATGTGAGCAAGTGGAAGACCATGTTTGGAACATGGCATCGACATTGTTATCA
1 CATCGGCCTCAATATGTGAGCAAGTGGAAGACCATGTTTGGAACATGGCATAGACATTGTTATCA
*
24552062 GAGCTAGTGTAAGACCATGTCTGGGACATGG
66 GAGCTAGTGTAAGACCATGTCTAGGACATGG
* ** *
24552093 CATCGGCCTCAATATGTGAGCTAGTTTAAGACCTTGTTTGGAACATGGCATTAG-CATTGTTA-C
1 CATCGGCCTCAATATGTGAGCAAGTGGAAGACCATGTTTGGAACATGGCA-TAGACATTGTTATC
24552156 AAGAGCTAGTGTAAGACCATGTCTAGGACATGG
65 -AGAGCTAGTGTAAGACCATGTCTAGGACATGG
24552189 CATC
1 CATC
24552193 AGCATCTTAC
Statistics
Matches: 92, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
95 1 0.01
96 89 0.97
97 2 0.02
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.27
Consensus pattern (96 bp):
CATCGGCCTCAATATGTGAGCAAGTGGAAGACCATGTTTGGAACATGGCATAGACATTGTTATCA
GAGCTAGTGTAAGACCATGTCTAGGACATGG
Found at i:24558773 original size:16 final size:16
Alignment explanation
Indices: 24558752--24558786 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
24558742 GATCACTTTT
24558752 CTTGATAATTTTTATA
1 CTTGATAATTTTTATA
24558768 CTTGATAATTTTTATA
1 CTTGATAATTTTTATA
24558784 CTT
1 CTT
24558787 TTGGGACCCT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.29, C:0.09, G:0.06, T:0.57
Consensus pattern (16 bp):
CTTGATAATTTTTATA
Found at i:24559556 original size:48 final size:48
Alignment explanation
Indices: 24559474--24559758 Score: 256
Period size: 48 Copynumber: 5.9 Consensus size: 48
24559464 ATACTAGCGT
* * * * *
24559474 TATGTGAGCCAGTGTAAGACCATGT-TTGGAACATGGCATTGGGATTTA
1 TATGAGAGCTAGTGTAAGACCATGTCTAGG-ACATGGCATCGGCATTTA
* * * *
24559522 TATGAGAGCTAGTGTAGGACCATGTCTAAGACATGGCATCGGCCTTAA
1 TATGAGAGCTAGTGTAAGACCATGTCTAGGACATGGCATCGGCATTTA
* * * * * *
24559570 TATGTGAGCCAGTGTAAGATCGTGT-TTGGAACATGGCATCGACATTGT-
1 TATGAGAGCTAGTGTAAGACCATGTCTAGG-ACATGGCATCGGCATT-TA
* * **
24559618 TATGAGAGCTAGTGTAAGACCATGTCTAGGACATGGCATTGGCCTCAA
1 TATGAGAGCTAGTGTAAGACCATGTCTAGGACATGGCATCGGCATTTA
* * *
24559666 TATGTGAGCTAGTGTAAGATCATGT-TTGGAACATGGCATCGGCATTGT-
1 TATGAGAGCTAGTGTAAGACCATGTCTAGG-ACATGGCATCGGCATT-TA
* * * *
24559714 TACGAGAGCTAGTATAAGACCATGTCTGGGACATGGCATCAGCAT
1 TATGAGAGCTAGTGTAAGACCATGTCTAGGACATGGCATCGGCAT
24559759 CTTACCCTTT
Statistics
Matches: 187, Mismatches: 42, Indels: 16
0.76 0.17 0.07
Matches are distributed among these distances:
47 5 0.03
48 174 0.93
49 8 0.04
ACGTcount: A:0.28, C:0.16, G:0.28, T:0.28
Consensus pattern (48 bp):
TATGAGAGCTAGTGTAAGACCATGTCTAGGACATGGCATCGGCATTTA
Found at i:24559639 original size:96 final size:96
Alignment explanation
Indices: 24559474--24559753 Score: 427
Period size: 96 Copynumber: 2.9 Consensus size: 96
24559464 ATACTAGCGT
* * *
24559474 TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATTGGGATT-TATATGAGAGCTAGTGTA
1 TATGTGAGCCAGTGTAAGATCATGTTTGGAACATGGCATCGGCATTGT-TATGAGAGCTAGTGTA
* * *
24559538 GGACCATGTCTAAGACATGGCATCGGCCTTAA
65 AGACCATGTCTAGGACATGGCATCGGCCTCAA
* *
24559570 TATGTGAGCCAGTGTAAGATCGTGTTTGGAACATGGCATCGACATTGTTATGAGAGCTAGTGTAA
1 TATGTGAGCCAGTGTAAGATCATGTTTGGAACATGGCATCGGCATTGTTATGAGAGCTAGTGTAA
*
24559635 GACCATGTCTAGGACATGGCATTGGCCTCAA
66 GACCATGTCTAGGACATGGCATCGGCCTCAA
* * *
24559666 TATGTGAGCTAGTGTAAGATCATGTTTGGAACATGGCATCGGCATTGTTACGAGAGCTAGTATAA
1 TATGTGAGCCAGTGTAAGATCATGTTTGGAACATGGCATCGGCATTGTTATGAGAGCTAGTGTAA
*
24559731 GACCATGTCTGGGACATGGCATC
66 GACCATGTCTAGGACATGGCATC
24559754 AGCATCTTAC
Statistics
Matches: 167, Mismatches: 16, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
96 166 0.99
97 1 0.01
ACGTcount: A:0.28, C:0.16, G:0.28, T:0.28
Consensus pattern (96 bp):
TATGTGAGCCAGTGTAAGATCATGTTTGGAACATGGCATCGGCATTGTTATGAGAGCTAGTGTAA
GACCATGTCTAGGACATGGCATCGGCCTCAA
Found at i:24559732 original size:144 final size:144
Alignment explanation
Indices: 24559472--24559753 Score: 325
Period size: 144 Copynumber: 2.0 Consensus size: 144
24559462 TGATACTAGC
* * * **
24559472 GTTATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATTGGGATTTATATGAGAGCTAGTGT
1 GTTATGAGAGCCAGTGTAAGACCATGTTAGGAACATGGCATTGGCATCAATATGAGAGCTAGTGT
* * * * * * * *
24559537 AGGACCATGTCTAAGACATGGCATCGGCCTTAATATGTGAGCCAGTGTAAGATCGTGTTTGGAAC
66 AAGACCATGTCTAAGACATGGCATCGGCATTAATACGAGAGCCAGTATAAGACCATGTCTGGAAC
24559602 ATGGCATCGACATT
131 ATGGCATCGACATT
* * *
24559616 GTTATGAGAGCTAGTGTAAGACCATGTCTAGG-ACATGGCATTGGCCTCAATATGTGAGCTAGTG
1 GTTATGAGAGCCAGTGTAAGACCATGT-TAGGAACATGGCATTGGCATCAATATGAGAGCTAGTG
* ** ** * *
24559680 TAAGATCATGT-TTGGAACATGGCATCGGCATTGTTACGAGAGCTAGTATAAGACCATGTCTGGG
65 TAAGACCATGTCTAAG-ACATGGCATCGGCATTAATACGAGAGCCAGTATAAGACCATGTCTGGA
24559744 ACATGGCATC
129 ACATGGCATC
24559754 AGCATCTTAC
Statistics
Matches: 113, Mismatches: 23, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
143 2 0.02
144 108 0.96
145 3 0.03
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.28
Consensus pattern (144 bp):
GTTATGAGAGCCAGTGTAAGACCATGTTAGGAACATGGCATTGGCATCAATATGAGAGCTAGTGT
AAGACCATGTCTAAGACATGGCATCGGCATTAATACGAGAGCCAGTATAAGACCATGTCTGGAAC
ATGGCATCGACATT
Found at i:24563881 original size:85 final size:85
Alignment explanation
Indices: 24563725--24563929 Score: 211
Period size: 85 Copynumber: 2.4 Consensus size: 85
24563715 CGGAAAGCTC
* * * * * * *
24563725 ATACAATGCCAATGTTCTAGACGTGATCTTACATGTAATCAAATATCGATGCCACTGTCCTAGAC
1 ATACAATGCCAATGTCCTAGACATGTTCTTACAAGTAATCAAATATCGATACCACTATCCCAGAC
24563790 AAGGTCTTACAC-AAAATCAA
66 AAGGTCTTACACGAAAATC-A
*
24563810 ATACGATGCCAATGTCCTAGACATGTTCTTACAAGTAAATCAAATA-CGATACCAAC-ATCCCAG
1 ATACAATGCCAATGTCCTAGACATGTTCTTACAAGT-AATCAAATATCGATACC-ACTATCCCAG
** *
24563873 ACGTGGTCTTACACGTAAATCA
64 ACAAGGTCTTACACGAAAATCA
* *
24563895 TTAGTCAATGCCAACGTCCTAGACATGGTT-TTACA
1 ATA--CAATGCCAATGTCCTAGACAT-GTTCTTACA
24563930 TGAGAACACA
Statistics
Matches: 100, Mismatches: 14, Indels: 10
0.81 0.11 0.08
Matches are distributed among these distances:
85 57 0.57
86 16 0.16
87 24 0.24
88 3 0.03
ACGTcount: A:0.35, C:0.23, G:0.15, T:0.27
Consensus pattern (85 bp):
ATACAATGCCAATGTCCTAGACATGTTCTTACAAGTAATCAAATATCGATACCACTATCCCAGAC
AAGGTCTTACACGAAAATCA
Found at i:24563883 original size:43 final size:43
Alignment explanation
Indices: 24563725--24563929 Score: 177
Period size: 43 Copynumber: 4.8 Consensus size: 43
24563715 CGGAAAGCTC
* * * * * *
24563725 ATACAATGCCAATGTTCTAGACGTGATCTTACATGT-AATCAA
1 ATACGATGCCAACGTCCTAGACATGGTCTTACAAGTAAATCAA
*
24563767 ATATCGATGCC-ACTGTCCTAGACAAGGTCTTACACA--AAATCAA
1 ATA-CGATGCCAAC-GTCCTAGACATGGTCTTACA-AGTAAATCAA
* *
24563810 ATACGATGCCAATGTCCTAGACATGTTCTTACAAGTAAATCAA
1 ATACGATGCCAACGTCCTAGACATGGTCTTACAAGTAAATCAA
* * * * *
24563853 ATACGATACCAACATCCCAGACGTGGTCTTACACGTAAATC-A
1 ATACGATGCCAACGTCCTAGACATGGTCTTACAAGTAAATCAA
* * *
24563895 TTAGTCAATGCCAACGTCCTAGACATGGTTTTACA
1 ATA--CGATGCCAACGTCCTAGACATGGTCTTACA
24563930 TGAGAACACA
Statistics
Matches: 130, Mismatches: 24, Indels: 16
0.76 0.14 0.09
Matches are distributed among these distances:
41 1 0.01
42 32 0.25
43 73 0.56
44 24 0.18
ACGTcount: A:0.35, C:0.23, G:0.15, T:0.27
Consensus pattern (43 bp):
ATACGATGCCAACGTCCTAGACATGGTCTTACAAGTAAATCAA
Found at i:24572162 original size:47 final size:47
Alignment explanation
Indices: 24572089--24572207 Score: 150
Period size: 47 Copynumber: 2.5 Consensus size: 47
24572079 ATCGATAAGT
* * * *
24572089 ACCTATCCCATGGCCCGTAGCAAAATCAAAGTAACT-TATCCCGGAGC
1 ACCTATACCATGGCCCGTAGCCAAATCAAAGTAACTCCA-CCCGGAAC
* * * *
24572136 ACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTCCACTCTGAAT
1 ACCTATACCATGGCCCGTAGCCAAATCAAAGTAACTCCACCCGGAAC
24572183 ACCTATACCATGGCCCGTAGCCAAA
1 ACCTATACCATGGCCCGTAGCCAAA
24572208 CAAGGTATTA
Statistics
Matches: 63, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
47 62 0.98
48 1 0.02
ACGTcount: A:0.32, C:0.33, G:0.16, T:0.19
Consensus pattern (47 bp):
ACCTATACCATGGCCCGTAGCCAAATCAAAGTAACTCCACCCGGAAC
Found at i:24577715 original size:44 final size:45
Alignment explanation
Indices: 24577665--24577756 Score: 159
Period size: 44 Copynumber: 2.1 Consensus size: 45
24577655 ATATATGAGG
*
24577665 CATCTGAGCTCGTTGAATTGGTCCGAGTTCATTATGGATGCGA-A
1 CATCTGAGCTCGTTGAATTGGTCCGAGTTCATAATGGATGCGATA
*
24577709 CATCTGATCTCGTTGAATTGGTCCGAGTTCATAATGGATGCGATA
1 CATCTGAGCTCGTTGAATTGGTCCGAGTTCATAATGGATGCGATA
24577754 CAT
1 CAT
24577757 GTAATTAGAT
Statistics
Matches: 45, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
44 41 0.91
45 4 0.09
ACGTcount: A:0.24, C:0.18, G:0.25, T:0.33
Consensus pattern (45 bp):
CATCTGAGCTCGTTGAATTGGTCCGAGTTCATAATGGATGCGATA
Found at i:24583226 original size:18 final size:17
Alignment explanation
Indices: 24583196--24583240 Score: 54
Period size: 17 Copynumber: 2.5 Consensus size: 17
24583186 TTATACCCAC
24583196 TCTTTTCCTCCTTTGACTT
1 TCTTTT-CTCCTTT-ACTT
*
24583215 TCTTTTCTCCTTTTCTT
1 TCTTTTCTCCTTTACTT
*
24583232 TTTTTTCTC
1 TCTTTTCTC
24583241 TCTTACTCGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
17 11 0.46
18 7 0.29
19 6 0.25
ACGTcount: A:0.02, C:0.29, G:0.02, T:0.67
Consensus pattern (17 bp):
TCTTTTCTCCTTTACTT
Found at i:24583574 original size:10 final size:10
Alignment explanation
Indices: 24583559--24583588 Score: 60
Period size: 10 Copynumber: 3.0 Consensus size: 10
24583549 ATATAAAAAG
24583559 TTAAAATAAT
1 TTAAAATAAT
24583569 TTAAAATAAT
1 TTAAAATAAT
24583579 TTAAAATAAT
1 TTAAAATAAT
24583589 AAATTTGAGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (10 bp):
TTAAAATAAT
Found at i:24585735 original size:15 final size:15
Alignment explanation
Indices: 24585715--24585748 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
24585705 AAAAAAATGT
24585715 TACAGTAGATAAAAC
1 TACAGTAGATAAAAC
*
24585730 TACAGTAGATAAAAT
1 TACAGTAGATAAAAC
24585745 TACA
1 TACA
24585749 TTATAATATA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.53, C:0.12, G:0.12, T:0.24
Consensus pattern (15 bp):
TACAGTAGATAAAAC
Found at i:24599084 original size:19 final size:19
Alignment explanation
Indices: 24599060--24599097 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
24599050 ATCATTTACA
24599060 ACTTTTTGTCAATTTGGTG
1 ACTTTTTGTCAATTTGGTG
24599079 ACTTTTTGTCAATTTGGTG
1 ACTTTTTGTCAATTTGGTG
24599098 TTTACTCTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.16, C:0.11, G:0.21, T:0.53
Consensus pattern (19 bp):
ACTTTTTGTCAATTTGGTG
Found at i:24601132 original size:19 final size:19
Alignment explanation
Indices: 24601110--24601147 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
24601100 AAAGAACTAA
24601110 GTAATTTGAAAAATATAAG
1 GTAATTTGAAAAATATAAG
24601129 GTAATTTGAAAAATATAAG
1 GTAATTTGAAAAATATAAG
24601148 AATGTTACTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.53, C:0.00, G:0.16, T:0.32
Consensus pattern (19 bp):
GTAATTTGAAAAATATAAG
Found at i:24606281 original size:19 final size:18
Alignment explanation
Indices: 24606257--24606298 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
24606247 TTTAATTAGA
*
24606257 AATTTAATTAATTAATATT
1 AATTTAATCAA-TAATATT
24606276 AATTTAATCAATAATATT
1 AATTTAATCAATAATATT
*
24606294 TATTT
1 AATTT
24606299 TGGAAATAGA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 11 0.52
19 10 0.48
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.52
Consensus pattern (18 bp):
AATTTAATCAATAATATT
Found at i:24609246 original size:21 final size:20
Alignment explanation
Indices: 24609218--24609256 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
24609208 ATGTGTATTT
24609218 TGAAGTTTCTTGATAGATTA
1 TGAAGTTTCTTGATAGATTA
*
24609238 TGAATGTTTGTTGATAGAT
1 TGAA-GTTTCTTGATAGAT
24609257 AGACAAGTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.28, C:0.03, G:0.23, T:0.46
Consensus pattern (20 bp):
TGAAGTTTCTTGATAGATTA
Found at i:24612219 original size:26 final size:26
Alignment explanation
Indices: 24612190--24612243 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
24612180 AAAGCTGAAC
24612190 CTTAAGGAGATGCAAACAAAATTCAT
1 CTTAAGGAGATGCAAACAAAATTCAT
24612216 CTTAAGGAGATGCAAACAAAATTCAT
1 CTTAAGGAGATGCAAACAAAATTCAT
24612242 CT
1 CT
24612244 CAGTGTCAGA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.44, C:0.17, G:0.15, T:0.24
Consensus pattern (26 bp):
CTTAAGGAGATGCAAACAAAATTCAT
Found at i:24624008 original size:27 final size:27
Alignment explanation
Indices: 24623977--24624036 Score: 93
Period size: 27 Copynumber: 2.2 Consensus size: 27
24623967 GTACCTAGAC
24623977 CCCCTAGTTGATAAAATGACTATTATG
1 CCCCTAGTTGATAAAATGACTATTATG
* * *
24624004 CCCCTAGTTTATAAAATGATTGTTATG
1 CCCCTAGTTGATAAAATGACTATTATG
24624031 CCCCTA
1 CCCCTA
24624037 TGAGATGTAT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.30, C:0.22, G:0.13, T:0.35
Consensus pattern (27 bp):
CCCCTAGTTGATAAAATGACTATTATG
Found at i:24624378 original size:34 final size:34
Alignment explanation
Indices: 24624334--24624401 Score: 84
Period size: 34 Copynumber: 2.0 Consensus size: 34
24624324 TCTGTACCGC
* * *
24624334 TACTGTTATTG-AGATGGGCTTAGGCCCAAACTGA
1 TACTGATATTGTA-ATGGGCTAAAGCCCAAACTGA
*
24624368 TACTGATATTGTAATGGGCTAAAGCCCTAACTGA
1 TACTGATATTGTAATGGGCTAAAGCCCAAACTGA
24624402 ACTTGAACCA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
34 28 0.97
35 1 0.03
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (34 bp):
TACTGATATTGTAATGGGCTAAAGCCCAAACTGA
Found at i:24628344 original size:31 final size:31
Alignment explanation
Indices: 24628309--24628370 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
24628299 AAGAGCCTCA
24628309 AGTATCTCCTCACTTAGAAGGAGCTGAATCT
1 AGTATCTCCTCACTTAGAAGGAGCTGAATCT
24628340 AGTATCTCCTCACTTAGAAGGAGCTGAATCT
1 AGTATCTCCTCACTTAGAAGGAGCTGAATCT
24628371 TAGGTAGCGT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.29
Consensus pattern (31 bp):
AGTATCTCCTCACTTAGAAGGAGCTGAATCT
Found at i:24633091 original size:40 final size:40
Alignment explanation
Indices: 24633046--24633236 Score: 228
Period size: 40 Copynumber: 4.8 Consensus size: 40
24633036 ATAACCACGT
24633046 GCACGAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC
1 GCACGAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC
24633086 GCACGAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC
1 GCACGAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC
* *
24633126 GCACGAATGCCTTCGGGTCTTAGCCCGGAT-GTA-GCCACTA
1 GCACGAATGCCTTCGGGTCTTAGCCCGGATAGAATG--ACTC
* * **
24633166 GCAC-AATTGCCTTCGGGTCTTAACCCGGATATAATTTC-C
1 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATAGAATGACTC
** * *
24633205 AGCATAAATGTCTTCGGGACTTAGCCCGGATA
1 -GCACGAATGCCTTCGGGTCTTAGCCCGGATA
24633237 TCATTCAATT
Statistics
Matches: 132, Mismatches: 12, Indels: 14
0.84 0.08 0.09
Matches are distributed among these distances:
38 1 0.01
39 4 0.03
40 124 0.94
41 3 0.02
ACGTcount: A:0.23, C:0.27, G:0.25, T:0.25
Consensus pattern (40 bp):
GCACGAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC
Found at i:24637527 original size:12 final size:11
Alignment explanation
Indices: 24637510--24637542 Score: 50
Period size: 10 Copynumber: 3.0 Consensus size: 11
24637500 TCCATTTATT
24637510 CACATTTTACGA
1 CACATTTTAC-A
24637522 CACATTTTACA
1 CACATTTTACA
24637533 -ACATTTTACA
1 CACATTTTACA
24637543 ATTAGGTCCT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
10 10 0.48
11 1 0.05
12 10 0.48
ACGTcount: A:0.36, C:0.24, G:0.03, T:0.36
Consensus pattern (11 bp):
CACATTTTACA
Found at i:24642714 original size:49 final size:49
Alignment explanation
Indices: 24642645--24642944 Score: 537
Period size: 49 Copynumber: 6.1 Consensus size: 49
24642635 GTACATAATA
24642645 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
*
24642694 ATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAATGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
* *
24642743 ACATATGTGATAAGGCCTAATGGCCGAGGTGATGAATGTGAAAATGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
* *
24642792 ACATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
24642841 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
* *
24642890 ATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
24642939 ATATAT
1 ATATAT
24642945 ATGTGGTAAA
Statistics
Matches: 242, Mismatches: 9, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 242 1.00
ACGTcount: A:0.34, C:0.09, G:0.27, T:0.29
Consensus pattern (49 bp):
ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
Found at i:24652807 original size:40 final size:40
Alignment explanation
Indices: 24652761--24652912 Score: 182
Period size: 40 Copynumber: 3.8 Consensus size: 40
24652751 CGGGATTTAA
24652761 CCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAGC
* *
24652801 CCGGATATAGCAACTCGCACAAATGCCTTCAGGTCTTAGC
1 CCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAGC
* * * *
24652841 CCGGATATAATC-GCTAGCATAAATGCCTTCGGGTCATAGC
1 CCGGATATAA-CAACTCGCACAAATGCCTTCGGGTCTTAGC
** * *
24652881 CCAAATATAGA-AACTTGCACGAATGCCTTCGG
1 CCGGATATA-ACAACTCGCACAAATGCCTTCGG
24652913 ATATTAGTCC
Statistics
Matches: 95, Mismatches: 14, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
40 93 0.98
41 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (40 bp):
CCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAGC
Found at i:24656861 original size:17 final size:17
Alignment explanation
Indices: 24656839--24656871 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
24656829 ATTTGACAAA
*
24656839 GCCCGATCAATGATAAT
1 GCCCGATAAATGATAAT
24656856 GCCCGATAAATGATAA
1 GCCCGATAAATGATAA
24656872 ATGATAAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.39, C:0.21, G:0.18, T:0.21
Consensus pattern (17 bp):
GCCCGATAAATGATAAT
Found at i:24663640 original size:43 final size:43
Alignment explanation
Indices: 24663584--24663709 Score: 117
Period size: 43 Copynumber: 2.9 Consensus size: 43
24663574 AAATACATAT
* * *
24663584 CGATGCCACTGTCCTAAATAGGGTCTTACACGAAATCACAACA
1 CGATGCTAATGTCCTAAACAGGGTCTTACACGAAATCACAACA
* * * * * *
24663627 CGATGCTAATGTCCCAGACATGGTCTTACACGTAATCTCAATA
1 CGATGCTAATGTCCTAAACAGGGTCTTACACGAAATCACAACA
* * ** * *
24663670 CAATGCTAATGTCCTAGACATAGTCTTACATGTAATCACA
1 CGATGCTAATGTCCTAAACAGGGTCTTACACGAAATCACA
24663710 TCTCGATAAC
Statistics
Matches: 69, Mismatches: 14, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
43 69 1.00
ACGTcount: A:0.33, C:0.25, G:0.15, T:0.26
Consensus pattern (43 bp):
CGATGCTAATGTCCTAAACAGGGTCTTACACGAAATCACAACA
Found at i:24676484 original size:43 final size:43
Alignment explanation
Indices: 24676432--24676524 Score: 159
Period size: 43 Copynumber: 2.2 Consensus size: 43
24676422 TCTTCCCCAA
*
24676432 AATCACAATACGATGCCAATGTCCCAGACATGGTCTTACACGT
1 AATCACAATACAATGCCAATGTCCCAGACATGGTCTTACACGT
* *
24676475 AATCTCAATACAATGCCAATGTCCCAGACATGGTCTTACATGT
1 AATCACAATACAATGCCAATGTCCCAGACATGGTCTTACACGT
24676518 AATCACA
1 AATCACA
24676525 TCTCAATAAC
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
43 46 1.00
ACGTcount: A:0.34, C:0.27, G:0.14, T:0.25
Consensus pattern (43 bp):
AATCACAATACAATGCCAATGTCCCAGACATGGTCTTACACGT
Found at i:24676548 original size:43 final size:42
Alignment explanation
Indices: 24676432--24676541 Score: 123
Period size: 43 Copynumber: 2.5 Consensus size: 42
24676422 TCTTCCCCAA
* *
24676432 AATCACAATACGATGCCAATGTCCCAGACATGGTCTTACACGT
1 AATCACAATACAATACCAATGT-CCAGACATGGTCTTACACGT
* * *
24676475 AATCTCAATACAATGCCAATGTCCCAGACATGGTCTTACATGT
1 AATCACAATACAATACCAATGT-CCAGACATGGTCTTACACGT
*
24676518 AATCAC-ATCTCAATAACCAATGTC
1 AATCACAAT-ACAAT-ACCAATGTC
24676542 ATGACATTTG
Statistics
Matches: 59, Mismatches: 6, Indels: 4
0.86 0.09 0.06
Matches are distributed among these distances:
42 2 0.03
43 50 0.85
44 7 0.12
ACGTcount: A:0.35, C:0.27, G:0.13, T:0.25
Consensus pattern (42 bp):
AATCACAATACAATACCAATGTCCAGACATGGTCTTACACGT
Found at i:24679770 original size:45 final size:45
Alignment explanation
Indices: 24679714--24679804 Score: 146
Period size: 45 Copynumber: 2.0 Consensus size: 45
24679704 GAACTATGTG
*
24679714 ATCTAAACTCATTGAGTTGTGGTCTAAGTTCATGATATATGTGGC
1 ATCTAAACTCATTGAGTTATGGTCTAAGTTCATGATATATGTGGC
* * *
24679759 ATCTGAACTCATTGAGTTATGGTCTGAGTTCATGATGTATGTGGC
1 ATCTAAACTCATTGAGTTATGGTCTAAGTTCATGATATATGTGGC
24679804 A
1 A
24679805 CATGTTTTGG
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.25, C:0.13, G:0.24, T:0.37
Consensus pattern (45 bp):
ATCTAAACTCATTGAGTTATGGTCTAAGTTCATGATATATGTGGC
Found at i:24685982 original size:37 final size:37
Alignment explanation
Indices: 24685916--24686079 Score: 199
Period size: 37 Copynumber: 4.5 Consensus size: 37
24685906 AGTACATAGA
*
24685916 TAATCCAACCGA-AACACACCA-ATCTCTCATAAGAGC
1 TAATCCAACCGATAACACACCAGAT-GCTCATAAGAGC
*
24685952 TAATCCAACCGATAACACACCAGATGCTCATAAGTGC
1 TAATCCAACCGATAACACACCAGATGCTCATAAGAGC
* * *
24685989 TAATCCACCCAATAACACACCAAATGCTCATAAGAGC
1 TAATCCAACCGATAACACACCAGATGCTCATAAGAGC
* * *
24686026 TAATCC-ACTCGATAACACGCTAGATGCTCATAGGAGC
1 TAATCCAAC-CGATAACACACCAGATGCTCATAAGAGC
* *
24686063 TAGTCCAACCGAAAACA
1 TAATCCAACCGATAACA
24686080 TTCCAAAACA
Statistics
Matches: 110, Mismatches: 14, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
36 13 0.12
37 93 0.85
38 4 0.04
ACGTcount: A:0.40, C:0.30, G:0.12, T:0.18
Consensus pattern (37 bp):
TAATCCAACCGATAACACACCAGATGCTCATAAGAGC
Found at i:24688387 original size:27 final size:27
Alignment explanation
Indices: 24688329--24688730 Score: 231
Period size: 27 Copynumber: 14.9 Consensus size: 27
24688319 TTAGTTTACC
** * * *
24688329 AAATTACTGAAATACCCTCAAATTGTA
1 AAATTACCAAAATACCCTCGATTTATA
*
24688356 AAATTACCAAAGTACCCTCGATTTATA
1 AAATTACCAAAATACCCTCGATTTATA
* *** *
24688383 GAATTACCATTTTACCCTCGATTTACA
1 AAATTACCAAAATACCCTCGATTTATA
* ****
24688410 GAATTACCGTTTTACCCTCGATTTATA
1 AAATTACCAAAATACCCTCGATTTATA
* **** * *
24688437 GAATTACCGTTTTACCCTTGATTTACA
1 AAATTACCAAAATACCCTCGATTTATA
* ***** * *
24688464 GAATTACTGTTTTACCCTTGATTTACA
1 AAATTACCAAAATACCCTCGATTTATA
* *
24688491 AAATTACAAAAATACCCTC-AGTTTACA
1 AAATTACCAAAATACCCTCGA-TTTATA
*
24688518 AAATTACCAAAATACCCTCGA-TCAGTA
1 AAATTACCAAAATACCCTCGATTTA-TA
* *
24688545 AAATTACCAAAATACCCTAG-TTTGTA
1 AAATTACCAAAATACCCTCGATTTATA
* * * * *
24688571 AAATTGCAAAAATACCCTTGGTTTGTA
1 AAATTACCAAAATACCCTCGATTTATA
* * *
24688598 AAATTACCGAAATACCCTCAATTTGTA
1 AAATTACCAAAATACCCTCGATTTATA
* * *
24688625 AAATTACCAAAATGCCC-CTAGTTTGTA
1 AAATTACCAAAATACCCTCGA-TTTATA
* * *
24688652 AAATTACCAAAATACCACT-GGTTTGTG
1 AAATTACCAAAATACC-CTCGATTTATA
* * * *
24688679 AAATTACCGAAATACCTTCAATTTGTA
1 AAATTACCAAAATACCCTCGATTTATA
24688706 AAATTACCAAAATACCC-CTGATTTA
1 AAATTACCAAAATACCCTC-GATTTA
24688731 CAAAGTTATA
Statistics
Matches: 311, Mismatches: 54, Indels: 20
0.81 0.14 0.05
Matches are distributed among these distances:
26 26 0.08
27 283 0.91
28 2 0.01
ACGTcount: A:0.38, C:0.21, G:0.09, T:0.32
Consensus pattern (27 bp):
AAATTACCAAAATACCCTCGATTTATA
Found at i:24688548 original size:54 final size:53
Alignment explanation
Indices: 24688476--24688722 Score: 262
Period size: 54 Copynumber: 4.6 Consensus size: 53
24688466 ATTACTGTTT
* ** * **
24688476 TACCCTTGATTTACAAAATTACAAAAATACCCTCAGTTTACAAAATTACCAAAA
1 TACCCTCGATTTGTAAAATTACCAAAATACCCT-AGTTTGTAAAATTACCAAAA
** * *
24688530 TACCCTCGATCAGTAAAATTACCAAAATACCCTAGTTTGTAAAATTGCAAAAA
1 TACCCTCGATTTGTAAAATTACCAAAATACCCTAGTTTGTAAAATTACCAAAA
* * * *
24688583 TACCCTTGGTTTGTAAAATTACCGAAATACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTCGATTTGTAAAATTACCAAAATACCCT-AGTTTGTAAAATTACCAAAA
* * * * *
24688637 TGCCC-CTAGTTTGTAAAATTACCAAAATACCACTGGTTTGTGAAATTACCGAAA
1 TACCCTCGA-TTTGTAAAATTACCAAAATACC-CTAGTTTGTAAAATTACCAAAA
* *
24688691 TACCTTCAATTTGTAAAATTACCAAAATACCC
1 TACCCTCGATTTGTAAAATTACCAAAATACCC
24688723 CTGATTTACA
Statistics
Matches: 159, Mismatches: 30, Indels: 9
0.80 0.15 0.05
Matches are distributed among these distances:
53 45 0.28
54 110 0.69
55 4 0.03
ACGTcount: A:0.41, C:0.21, G:0.09, T:0.29
Consensus pattern (53 bp):
TACCCTCGATTTGTAAAATTACCAAAATACCCTAGTTTGTAAAATTACCAAAA
Found at i:24688683 original size:81 final size:80
Alignment explanation
Indices: 24688490--24688724 Score: 319
Period size: 81 Copynumber: 2.9 Consensus size: 80
24688480 CTTGATTTAC
** ** * * **
24688490 AAAATTACAAAAATACCCTCAGTTTACAAAATTACCAAAATACCCTCGATCAGTAAAATTACCAA
1 AAAATTACAAAAATACCCTTGGTTTGTAAAATTACCGAAATACCCTCAATTTGTAAAATTACCAA
*
24688555 AATACCCTAGTTTGT
66 AATCCCCTAGTTTGT
*
24688570 AAAATTGCAAAAATACCCTTGGTTTGTAAAATTACCGAAATACCCTCAATTTGTAAAATTACCAA
1 AAAATTACAAAAATACCCTTGGTTTGTAAAATTACCGAAATACCCTCAATTTGTAAAATTACCAA
24688635 AATGCCCCTAGTTTGT
66 AAT-CCCCTAGTTTGT
* * *
24688651 AAAATTACCAAAATACCAC-TGGTTTGTGAAATTACCGAAATACCTTCAATTTGTAAAATTACCA
1 AAAATTACAAAAATACC-CTTGGTTTGTAAAATTACCGAAATACCCTCAATTTGTAAAATTACCA
24688715 AAATACCCCT
65 AAAT-CCCCT
24688725 GATTTACAAA
Statistics
Matches: 138, Mismatches: 15, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
80 59 0.43
81 78 0.57
82 1 0.01
ACGTcount: A:0.42, C:0.21, G:0.09, T:0.29
Consensus pattern (80 bp):
AAAATTACAAAAATACCCTTGGTTTGTAAAATTACCGAAATACCCTCAATTTGTAAAATTACCAA
AATCCCCTAGTTTGT
Found at i:24688958 original size:27 final size:27
Alignment explanation
Indices: 24688858--24688958 Score: 91
Period size: 27 Copynumber: 3.7 Consensus size: 27
24688848 GACTAAAATA
*
24688858 CCCCTATTA-AGTAAAAAGACCGTAAAG
1 CCCCTA-TAGAGTAAAATGACCGTAAAG
*
24688885 CCCCTATAGGGTAAAGA-GACCGTAAAG
1 CCCCTATAGAGTAAA-ATGACCGTAAAG
* * *
24688912 CCCCTGTAGGGTAAAGTGACCGTAATA-
1 CCCCTATAGAGTAAAATGACCGTAA-AG
* *
24688939 CCCCTGTATAGTAAAATGAC
1 CCCCTATAGAGTAAAATGAC
24688959 GAATGTGCCC
Statistics
Matches: 64, Mismatches: 6, Indels: 8
0.82 0.08 0.10
Matches are distributed among these distances:
26 2 0.03
27 60 0.94
28 2 0.03
ACGTcount: A:0.37, C:0.23, G:0.21, T:0.20
Consensus pattern (27 bp):
CCCCTATAGAGTAAAATGACCGTAAAG
Found at i:24690505 original size:46 final size:46
Alignment explanation
Indices: 24690452--24690627 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
24690442 TATTTGGGCA
24690452 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
24690498 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
24690545 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
24690591 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
24690628 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:24690607 original size:93 final size:93
Alignment explanation
Indices: 24690448--24690619 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
24690438 GGGATATTTG
* *
24690448 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
24690513 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
24690541 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
24690606 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
24690620 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:24692594 original size:52 final size:51
Alignment explanation
Indices: 24692518--24692653 Score: 215
Period size: 52 Copynumber: 2.7 Consensus size: 51
24692508 GAGGAAGTGC
* *
24692518 AAAAGGGCTTATGCCCTAGTTTATTGAAAAGGGCTTATGCCTCAGTTTACCA
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTT-TGCCCCAGTTTACCA
24692570 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTTGCCCCAGTTTACCA
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTTGCCCCAGTTTACCA
24692621 AAAAGGGCTT-TGCCCCAG-TTATT-AAAAGAGGCT
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAG-GGCT
24692654 AGGCCTCCAG
Statistics
Matches: 81, Mismatches: 2, Indels: 5
0.92 0.02 0.06
Matches are distributed among these distances:
48 5 0.06
49 9 0.11
50 8 0.10
51 24 0.30
52 35 0.43
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.28
Consensus pattern (51 bp):
AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTTGCCCCAGTTTACCA
Found at i:24692615 original size:25 final size:26
Alignment explanation
Indices: 24692518--24692647 Score: 167
Period size: 26 Copynumber: 5.1 Consensus size: 26
24692508 GAGGAAGTGC
* *
24692518 AAAAGGGCTTATGCCCTAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTA
* **
24692544 AAAAGGGCTTATGCCTCAGTTTACCA
1 AAAAGGGCTTATGCCCCAGTTTATTA
*
24692570 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTA
**
24692596 AAAAGGGCTT-TGCCCCAGTTTACCA
1 AAAAGGGCTTATGCCCCAGTTTATTA
24692621 AAAAGGGCTT-TGCCCCAG-TTATTA
1 AAAAGGGCTTATGCCCCAGTTTATTA
24692645 AAA
1 AAA
24692648 GAGGCTAGGC
Statistics
Matches: 90, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
24 7 0.08
25 30 0.33
26 53 0.59
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATTA
Found at i:24692897 original size:31 final size:31
Alignment explanation
Indices: 24692859--24692929 Score: 124
Period size: 31 Copynumber: 2.3 Consensus size: 31
24692849 CGTTTACAGT
*
24692859 AAAGGCTTCGTCCCAATGATATGATTTATGA
1 AAAGGCTTCGGCCCAATGATATGATTTATGA
*
24692890 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAATGATATGATTTATGA
24692921 AAAGGCTTC
1 AAAGGCTTC
24692930 AGCCAGTAAC
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
31 38 1.00
ACGTcount: A:0.31, C:0.17, G:0.23, T:0.30
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAATGATATGATTTATGA
Found at i:24695764 original size:27 final size:28
Alignment explanation
Indices: 24695708--24695777 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
24695698 AAACTTGTAC
24695708 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
24695736 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
24695763 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
24695778 GACTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:24695788 original size:27 final size:27
Alignment explanation
Indices: 24695708--24695789 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
24695698 AAACTTGTAC
* *
24695708 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
24695736 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
24695763 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
24695790 GCTTTTGAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
26 1 0.02
27 30 0.61
28 18 0.37
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:24698200 original size:27 final size:27
Alignment explanation
Indices: 24698165--24698533 Score: 221
Period size: 27 Copynumber: 13.7 Consensus size: 27
24698155 TCAAATTGTA
*
24698165 AAAATTACCAAAGTACCCTCGATTTAT
1 AAAATTACCAAAATACCCTCGATTTAT
* ****
24698192 AGAATTACCGTTTTACCCTCGATTTAT
1 AAAATTACCAAAATACCCTCGATTTAT
* **** *
24698219 AGAATTACCGTTTTACCCTTGATTTAT
1 AAAATTACCAAAATACCCTCGATTTAT
* ***** *
24698246 AGAATTACTGTTTTACCCTCAATTTA-
1 AAAATTACCAAAATACCCTCGATTTAT
* * *
24698272 AATAATTACTAAAATACCCTCGGTTTAC
1 AA-AATTACCAAAATACCCTCGATTTAT
*
24698300 AAAATTACCAAAATACCCTCGA-TCAGT
1 AAAATTACCAAAATACCCTCGATTTA-T
* *
24698327 AAAATTACCAAAATACCCTAG-TCTAT
1 AAAATTACCAAAATACCCTCGATTTAT
* * * * *
24698353 AAAATTGCTAAAATACCCTTGGTTTGT
1 AAAATTACCAAAATACCCTCGATTTAT
* * *
24698380 AAAATTACCGAAATACCCTCAATTTGT
1 AAAATTACCAAAATACCCTCGATTTAT
* *
24698407 AAAATTACCAAAATACCC-CTAGTTTGT
1 AAAATTACCAAAATACCCTCGA-TTTAT
* * *
24698434 CAAATTACCAAAATACCACTAG-TTTGT
1 AAAATTACCAAAATACC-CTCGATTTAT
* * * * * *
24698461 GAAATTATCGAAATACCCTCAACTTGT
1 AAAATTACCAAAATACCCTCGATTTAT
*
24698488 AAAATTACCAAAATA-CCTCTGATTTAC
1 AAAATTACCAAAATACCCTC-GATTTAT
*
24698515 AAAGTTA-CAGAAATACCCT
1 AAAATTACCA-AAATACCCT
24698534 TGACTTTCTA
Statistics
Matches: 277, Mismatches: 53, Indels: 23
0.78 0.15 0.07
Matches are distributed among these distances:
26 32 0.12
27 239 0.86
28 6 0.02
ACGTcount: A:0.38, C:0.21, G:0.08, T:0.32
Consensus pattern (27 bp):
AAAATTACCAAAATACCCTCGATTTAT
Done.