Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr02 99090824
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 99090824
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 317 characters in sequence are not A, C, G, or T
File 83 of 318
Found at i:24698473 original size:81 final size:81
Alignment explanation
Indices: 24698275--24698504 Score: 275
Period size: 81 Copynumber: 2.9 Consensus size: 81
24698265 CAATTTAAAT
* ** ** * * **
24698275 AATTACTAAAATACCCTCGGTTTACAAAATTACCAAAATACCCTCGATCAGTAAAATTACCAAAA
1 AATTACCAAAATACCCTTAGTTTGTAAAATTACCGAAATACCCTCAATTTGTAAAATTACCAAAA
24698340 TA-CCCTAGTCTATAA
66 TACCCCTAGTCTATAA
* * *
24698355 AATTGCTAAAATACCCTTGGTTTGTAAAATTACCGAAATACCCTCAATTTGTAAAATTACCAAAA
1 AATTACCAAAATACCCTTAGTTTGTAAAATTACCGAAATACCCTCAATTTGTAAAATTACCAAAA
* * *
24698420 TACCCCTAGTTTGTCA
66 TACCCCTAGTCTATAA
* * *
24698436 AATTACCAAAATACCAC-TAGTTTGTGAAATTATCGAAATACCCTCAACTTGTAAAATTACCAAA
1 AATTACCAAAATACC-CTTAGTTTGTAAAATTACCGAAATACCCTCAATTTGTAAAATTACCAAA
24698500 ATACC
65 ATACC
24698505 TCTGATTTAC
Statistics
Matches: 131, Mismatches: 17, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
80 59 0.45
81 71 0.54
82 1 0.01
ACGTcount: A:0.41, C:0.22, G:0.08, T:0.29
Consensus pattern (81 bp):
AATTACCAAAATACCCTTAGTTTGTAAAATTACCGAAATACCCTCAATTTGTAAAATTACCAAAA
TACCCCTAGTCTATAA
Found at i:24698681 original size:27 final size:27
Alignment explanation
Indices: 24698651--24698709 Score: 93
Period size: 27 Copynumber: 2.2 Consensus size: 27
24698641 CACCTATTAA
24698651 GTAAAAAGACCA-TAAAGCCCCTGTAGG
1 GTAAAAAGA-CAGTAAAGCCCCTGTAGG
*
24698678 GTAAAGAGACAGTAAAGCCCCTGTAGG
1 GTAAAAAGACAGTAAAGCCCCTGTAGG
24698705 GTAAA
1 GTAAA
24698710 GTAACCGTAA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
26 2 0.07
27 28 0.93
ACGTcount: A:0.41, C:0.19, G:0.25, T:0.15
Consensus pattern (27 bp):
GTAAAAAGACAGTAAAGCCCCTGTAGG
Found at i:24699480 original size:26 final size:26
Alignment explanation
Indices: 24699451--24699561 Score: 156
Period size: 26 Copynumber: 4.3 Consensus size: 26
24699441 GAGGAAGTAC
24699451 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
**
24699477 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
*
24699503 AAAAGGGCTTATGCCCCAGTTTATTA
1 AAAAGGGCTTATGCCCCAGTTTATTG
*
24699529 AAAAGTGCTT-TGCCCCAG-TTATT-
1 AAAAGGGCTTATGCCCCAGTTTATTG
24699552 AAAAGAGGCT
1 AAAAG-GGCT
24699562 AGGCCTCCAG
Statistics
Matches: 77, Mismatches: 7, Indels: 4
0.88 0.08 0.05
Matches are distributed among these distances:
23 5 0.06
24 8 0.10
25 8 0.10
26 56 0.73
ACGTcount: A:0.30, C:0.21, G:0.22, T:0.28
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATTG
Found at i:24699805 original size:31 final size:31
Alignment explanation
Indices: 24699767--24699843 Score: 118
Period size: 31 Copynumber: 2.5 Consensus size: 31
24699757 CGTTTACAGT
*
24699767 AAAGGCTTCAGCCCAATGATATGATTTATGA
1 AAAGGCTTCAGCCCAATGATATGATTTACGA
* *
24699798 AAAGGCTTCGGCCCAGTGATATGATTTACGA
1 AAAGGCTTCAGCCCAATGATATGATTTACGA
*
24699829 AAAAGCTTCAGCCCA
1 AAAGGCTTCAGCCCA
24699844 GTAACTGTTA
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 41 1.00
ACGTcount: A:0.34, C:0.21, G:0.21, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCAGCCCAATGATATGATTTACGA
Found at i:24701471 original size:21 final size:19
Alignment explanation
Indices: 24701437--24701475 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 19
24701427 GGTTTCCATT
24701437 AAAAAAAATAAAAAAAGAA
1 AAAAAAAATAAAAAAAGAA
24701456 AAAAAGAAAGTAAAAAAAGA
1 AAAAA-AAA-TAAAAAAAGA
24701476 GAATAAATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 5 0.28
20 3 0.17
21 10 0.56
ACGTcount: A:0.85, C:0.00, G:0.10, T:0.05
Consensus pattern (19 bp):
AAAAAAAATAAAAAAAGAA
Found at i:24701881 original size:24 final size:24
Alignment explanation
Indices: 24701849--24701898 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
24701839 GTGATTACTC
24701849 TTGAAAGGATTTATATTTCATGCT
1 TTGAAAGGATTTATATTTCATGCT
24701873 TTGAAAGGATTTATATTTCATGCT
1 TTGAAAGGATTTATATTTCATGCT
24701897 TT
1 TT
24701899 TAGACCTAGC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.28, C:0.08, G:0.16, T:0.48
Consensus pattern (24 bp):
TTGAAAGGATTTATATTTCATGCT
Found at i:24701953 original size:20 final size:23
Alignment explanation
Indices: 24701922--24701966 Score: 69
Period size: 20 Copynumber: 2.1 Consensus size: 23
24701912 TTACTTGTAC
24701922 TTAAGTACATTTTA-TT-GCATT
1 TTAAGTACATTTTAGTTAGCATT
24701943 TTAAG-ACATTTTAGTTAGCATT
1 TTAAGTACATTTTAGTTAGCATT
24701965 TT
1 TT
24701967 TAATATTGCA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
20 8 0.36
21 7 0.32
22 7 0.32
ACGTcount: A:0.29, C:0.09, G:0.11, T:0.51
Consensus pattern (23 bp):
TTAAGTACATTTTAGTTAGCATT
Found at i:24702763 original size:56 final size:56
Alignment explanation
Indices: 24702647--24702763 Score: 139
Period size: 56 Copynumber: 2.1 Consensus size: 56
24702637 ATTCATTTTT
** * * ** *
24702647 CTTATTTCTTAATTAAAATGCAAAATGATCTCTAGACATATTACTGTTTCATTTTT
1 CTTATTTCTTAATTAAAATGCAAAATGATCTCTAGACATAAGACTGATACATCATA
24702703 CTTATTTCTTAATTAAAATGCAAAATGATCTCTAGACATAGAAGACT-ATACA-CATA
1 CTTATTTCTTAATTAAAATGCAAAATGATCTCTAGACAT--AAGACTGATACATCATA
24702759 CTTAT
1 CTTAT
24702764 AAACTGATTC
Statistics
Matches: 52, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
56 45 0.87
57 3 0.06
58 4 0.08
ACGTcount: A:0.37, C:0.15, G:0.08, T:0.40
Consensus pattern (56 bp):
CTTATTTCTTAATTAAAATGCAAAATGATCTCTAGACATAAGACTGATACATCATA
Found at i:24705785 original size:27 final size:27
Alignment explanation
Indices: 24705767--24706089 Score: 378
Period size: 27 Copynumber: 11.9 Consensus size: 27
24705757 CTCAATTTGT
24705767 AAAATTACCATTTTACCCTCGATTTAC
1 AAAATTACCATTTTACCCTCGATTTAC
* * *
24705794 AAAATTACCGTTTTTTACCTTCTATTTAC
1 AAAATTACC--ATTTTACCCTCGATTTAC
* *
24705823 AGAATTACCATTTTACCCTCGATTTAT
1 AAAATTACCATTTTACCCTCGATTTAC
*
24705850 AGAATTACCATTTTACCCTCGATTTAC
1 AAAATTACCATTTTACCCTCGATTTAC
* * * *
24705877 AGAATTACCATTTTACCTTAGATTTAT
1 AAAATTACCATTTTACCCTCGATTTAC
* * * *
24705904 AGAATTATCGTTTTACCCTCGATTTAT
1 AAAATTACCATTTTACCCTCGATTTAC
** *
24705931 AAAATTACTGTTTCACCCTCGATTTAC
1 AAAATTACCATTTTACCCTCGATTTAC
* * *
24705958 AAAATTATCGTTTTACCCTCGATTTAT
1 AAAATTACCATTTTACCCTCGATTTAC
*
24705985 AGAATTACCATTTTACCCTCGATTTAC
1 AAAATTACCATTTTACCCTCGATTTAC
* ** *
24706012 AGAATTAGTATTTTACCCTCAATTTAC
1 AAAATTACCATTTTACCCTCGATTTAC
24706039 AAAATTACCATTTTACCCTC-AGTTTAC
1 AAAATTACCATTTTACCCTCGA-TTTAC
*
24706066 AAAATTACTATTTTACCCTCGATT
1 AAAATTACCATTTTACCCTCGATT
24706090 GTGAAATTAC
Statistics
Matches: 256, Mismatches: 36, Indels: 8
0.85 0.12 0.03
Matches are distributed among these distances:
26 1 0.00
27 231 0.90
28 1 0.00
29 23 0.09
ACGTcount: A:0.31, C:0.22, G:0.07, T:0.41
Consensus pattern (27 bp):
AAAATTACCATTTTACCCTCGATTTAC
Found at i:24706261 original size:27 final size:27
Alignment explanation
Indices: 24706088--24706246 Score: 230
Period size: 27 Copynumber: 5.9 Consensus size: 27
24706078 TTACCCTCGA
* **
24706088 TTGTGAAATTACTGAAATACCCCTAGT
1 TTGTAAAATTACCAAAATACCCCTAGT
24706115 TTGTAAAATTACCAAAATACCCCTAGT
1 TTGTAAAATTACCAAAATACCCCTAGT
24706142 TTGTAAAATTACCAAAATACCCCTAGT
1 TTGTAAAATTACCAAAATACCCCTAGT
* *
24706169 TTGTAAAATTACCAAAATACCACTGGT
1 TTGTAAAATTACCAAAATACCCCTAGT
* * *
24706196 TTGTGAAATTACCAAAATA-CCTTCAAT
1 TTGTAAAATTACCAAAATACCCCT-AGT
24706223 TTGTAAAATTACCAAAATACCCCT
1 TTGTAAAATTACCAAAATACCCCT
24706247 GATTTACAAA
Statistics
Matches: 118, Mismatches: 12, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
26 2 0.02
27 113 0.96
28 3 0.03
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.31
Consensus pattern (27 bp):
TTGTAAAATTACCAAAATACCCCTAGT
Found at i:24706268 original size:54 final size:52
Alignment explanation
Indices: 24706093--24706285 Score: 192
Period size: 54 Copynumber: 3.6 Consensus size: 52
24706083 CTCGATTGTG
** * *
24706093 AAATTACTGAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTAATTTGTAAAATTACCAAAATACCCCT-GATT-TA
* * * *
24706147 AAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCACTGGTTTGTG
1 AAATTACCAAAATACCCCTAATTTGTAAAATTACCAAAATACCCCT-GATT-TA
*
24706201 AAATTACCAAAATA-CCTTCAATTTGTAAAATTACCAAAATACCCCTGATTTA
1 AAATTACCAAAATACCCCT-AATTTGTAAAATTACCAAAATACCCCTGATTTA
* *
24706253 CAAAGTTA-CAGAAATACCCTTAACTTTCTAAAA
1 -AAA-TTACCA-AAATACCCCTAA-TTTGTAAAA
24706286 ATTATAGAAA
Statistics
Matches: 122, Mismatches: 11, Indels: 11
0.85 0.08 0.08
Matches are distributed among these distances:
52 1 0.01
53 11 0.09
54 98 0.80
55 12 0.10
ACGTcount: A:0.41, C:0.21, G:0.08, T:0.30
Consensus pattern (52 bp):
AAATTACCAAAATACCCCTAATTTGTAAAATTACCAAAATACCCCTGATTTA
Found at i:24706268 original size:81 final size:81
Alignment explanation
Indices: 24706081--24706270 Score: 235
Period size: 81 Copynumber: 2.3 Consensus size: 81
24706071 TACTATTTTA
* * * * *
24706081 CCCTCGATTGTGAAATTACTGAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTAGTTTGT
1 CCCTAGATTGTAAAATTACAGAAATACCACTAGTTTGTAAAATTACCAAAATACCCCTAATTTGT
24706146 AAAATTACCAAAATAC
66 AAAATTACCAAAATAC
* * * *
24706162 CCCTAGTTTGTAAAATTACCA-AAATACCACTGGTTTGTGAAATTACCAAAATA-CCTTCAATTT
1 CCCTAGATTGTAAAATTA-CAGAAATACCACTAGTTTGTAAAATTACCAAAATACCCCT-AATTT
24706225 GTAAAATTACCAAAATAC
64 GTAAAATTACCAAAATAC
24706243 CCCT-GATT-TACAAAGTTACAGAAATACC
1 CCCTAGATTGTA-AAA-TTACAGAAATACC
24706271 CTTAACTTTC
Statistics
Matches: 94, Mismatches: 10, Indels: 10
0.82 0.09 0.09
Matches are distributed among these distances:
79 2 0.02
80 11 0.12
81 80 0.85
82 1 0.01
ACGTcount: A:0.39, C:0.22, G:0.09, T:0.29
Consensus pattern (81 bp):
CCCTAGATTGTAAAATTACAGAAATACCACTAGTTTGTAAAATTACCAAAATACCCCTAATTTGT
AAAATTACCAAAATAC
Found at i:24706314 original size:27 final size:27
Alignment explanation
Indices: 24706283--24706334 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
24706273 TAACTTTCTA
24706283 AAAATTA-TAGAAACACCATTGGTTTAC
1 AAAATTACT-GAAACACCATTGGTTTAC
* *
24706310 AAAATTACTGAAATACCCTTGGTTT
1 AAAATTACTGAAACACCATTGGTTT
24706335 GTAGATTTAC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
27 21 0.95
28 1 0.05
ACGTcount: A:0.40, C:0.15, G:0.12, T:0.33
Consensus pattern (27 bp):
AAAATTACTGAAACACCATTGGTTTAC
Found at i:24706781 original size:21 final size:21
Alignment explanation
Indices: 24706757--24706814 Score: 91
Period size: 21 Copynumber: 2.8 Consensus size: 21
24706747 CGATGGTAAG
24706757 TTGGGCCTCAATGGGCTAGAA
1 TTGGGCCTCAATGGGCTAGAA
*
24706778 TTGGGCCTCAATGGGCTGGAA
1 TTGGGCCTCAATGGGCTAGAA
*
24706799 TCGGGCC-CAATGGGCT
1 TTGGGCCTCAATGGGCT
24706815 TTCGACCCTA
Statistics
Matches: 35, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
20 9 0.26
21 26 0.74
ACGTcount: A:0.19, C:0.22, G:0.36, T:0.22
Consensus pattern (21 bp):
TTGGGCCTCAATGGGCTAGAA
Found at i:24707192 original size:20 final size:19
Alignment explanation
Indices: 24707158--24707213 Score: 62
Period size: 20 Copynumber: 2.9 Consensus size: 19
24707148 TGATAGTGGG
24707158 GTATGATAT-ACATGAT-T
1 GTATGATATCACATGATAT
24707175 GATATGATATGCACATGATAT
1 G-TATGATAT-CACATGATAT
*
24707196 GTATGAAATACACATGAT
1 GTATGATAT-CACATGAT
24707214 GAATTTATAA
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
17 1 0.03
18 8 0.24
20 22 0.67
21 2 0.06
ACGTcount: A:0.39, C:0.09, G:0.18, T:0.34
Consensus pattern (19 bp):
GTATGATATCACATGATAT
Found at i:24707360 original size:25 final size:26
Alignment explanation
Indices: 24707263--24707436 Score: 264
Period size: 26 Copynumber: 6.8 Consensus size: 26
24707253 GAGGAAGTGC
*
24707263 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATCG
*
24707289 AAAAGGGCTTATGCCTCAGTTTATCG
1 AAAAGGGCTTATGCCCCAGTTTATCG
*
24707315 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATCG
* *
24707341 AAAAGGGC-TCTGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATCG
*
24707366 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATCG
*
24707392 AAAAGGGCTT-TGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATCG
24707417 AAAAGGGCTT-TGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
24707437 ATTAAAGAGG
Statistics
Matches: 135, Mismatches: 12, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
25 55 0.41
26 80 0.59
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.28
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATCG
Found at i:24707381 original size:51 final size:51
Alignment explanation
Indices: 24707263--24707436 Score: 296
Period size: 51 Copynumber: 3.4 Consensus size: 51
24707253 GAGGAAGTGC
* *
24707263 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCTCAGTTTATCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGC-TATGCCCCAGTTTACCG
*
24707315 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTCTGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTATGCCCCAGTTTACCG
*
24707366 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTTGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTATGCCCCAGTTTACCG
24707417 AAAAGGGCTT-TGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
24707437 ATTAAAGAGG
Statistics
Matches: 118, Mismatches: 4, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
50 10 0.08
51 74 0.63
52 34 0.29
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.28
Consensus pattern (51 bp):
AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTATGCCCCAGTTTACCG
Found at i:24707640 original size:42 final size:42
Alignment explanation
Indices: 24707581--24707668 Score: 149
Period size: 42 Copynumber: 2.1 Consensus size: 42
24707571 TAGTCTCCCC
*
24707581 AAATGGGCTTGCATACATTCATTGGTATTTCATATGATATTG
1 AAATGGGCTTGCATACATTCATTGATATTTCATATGATATTG
* *
24707623 AAATGGGCTTGCATACATTCATTGATATTTCATGTGTTATTG
1 AAATGGGCTTGCATACATTCATTGATATTTCATATGATATTG
24707665 AAAT
1 AAAT
24707669 AGGCCTATGG
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.30, C:0.11, G:0.18, T:0.41
Consensus pattern (42 bp):
AAATGGGCTTGCATACATTCATTGATATTTCATATGATATTG
Found at i:24717537 original size:14 final size:13
Alignment explanation
Indices: 24717509--24717545 Score: 58
Period size: 14 Copynumber: 2.8 Consensus size: 13
24717499 ATCCTGGAAT
24717509 ATTAA-AACAATA
1 ATTAAGAACAATA
24717521 ATTAAGAACACATA
1 ATTAAGAACA-ATA
24717535 ATTAAGAACAA
1 ATTAAGAACAA
24717546 ATCAAATATT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
12 5 0.22
13 5 0.22
14 13 0.57
ACGTcount: A:0.62, C:0.11, G:0.05, T:0.22
Consensus pattern (13 bp):
ATTAAGAACAATA
Found at i:24729677 original size:29 final size:29
Alignment explanation
Indices: 24729651--24729723 Score: 119
Period size: 29 Copynumber: 2.5 Consensus size: 29
24729641 TTTTCAGCTT
* *
24729651 GCACACATAGTGTCATATTTTTCCAGCAC
1 GCACACTTAGTGCCATATTTTTCCAGCAC
*
24729680 GCACACTTAGTGCCATATATTTCCAGCAC
1 GCACACTTAGTGCCATATTTTTCCAGCAC
24729709 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
24729724 ATCTCGTCAC
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.27, C:0.30, G:0.15, T:0.27
Consensus pattern (29 bp):
GCACACTTAGTGCCATATTTTTCCAGCAC
Found at i:24737713 original size:29 final size:29
Alignment explanation
Indices: 24737687--24737759 Score: 119
Period size: 29 Copynumber: 2.5 Consensus size: 29
24737677 TTTTCAGCTT
* *
24737687 GCACACATAGTGTCATATTTTTCCAGCAC
1 GCACACTTAGTGCCATATTTTTCCAGCAC
*
24737716 GCACACTTAGTGCCATATATTTCCAGCAC
1 GCACACTTAGTGCCATATTTTTCCAGCAC
24737745 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
24737760 ATCTCGTCAC
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.27, C:0.30, G:0.15, T:0.27
Consensus pattern (29 bp):
GCACACTTAGTGCCATATTTTTCCAGCAC
Found at i:24741983 original size:17 final size:18
Alignment explanation
Indices: 24741932--24741975 Score: 79
Period size: 18 Copynumber: 2.4 Consensus size: 18
24741922 TCCAAGGAAG
*
24741932 GGTTGTCAATGAAAACAA
1 GGTTTTCAATGAAAACAA
24741950 GGTTTTCAATGAAAACAA
1 GGTTTTCAATGAAAACAA
24741968 GGTTTTCA
1 GGTTTTCA
24741976 CTAAAACACT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.39, C:0.11, G:0.20, T:0.30
Consensus pattern (18 bp):
GGTTTTCAATGAAAACAA
Found at i:24745248 original size:17 final size:18
Alignment explanation
Indices: 24745216--24745249 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
24745206 CCGGGCCAGA
24745216 ATGGGCTTAATGGGCCCG
1 ATGGGCTTAATGGGCCCG
*
24745234 ATGGGC-TATTGGGCCC
1 ATGGGCTTAATGGGCCC
24745250 ATAATAGGCC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.15, C:0.24, G:0.38, T:0.24
Consensus pattern (18 bp):
ATGGGCTTAATGGGCCCG
Found at i:24745351 original size:29 final size:29
Alignment explanation
Indices: 24745309--24745388 Score: 110
Period size: 29 Copynumber: 2.8 Consensus size: 29
24745299 GTGAGCATGA
*
24745309 ATAT-AATGTTATTTGGGCCTAAA-GAGCC
1 ATATAAATGTGATTTGGGCCTAAAGGA-CC
*
24745337 ATATAAATGTGATTTGGACCTAAAGGACC
1 ATATAAATGTGATTTGGGCCTAAAGGACC
*
24745366 ATATAAATGTGATTTAGGCCTAA
1 ATATAAATGTGATTTGGGCCTAA
24745389 TGGGCCATGT
Statistics
Matches: 46, Mismatches: 4, Indels: 3
0.87 0.08 0.06
Matches are distributed among these distances:
28 4 0.09
29 40 0.87
30 2 0.04
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.31
Consensus pattern (29 bp):
ATATAAATGTGATTTGGGCCTAAAGGACC
Found at i:24751227 original size:17 final size:17
Alignment explanation
Indices: 24751205--24751238 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
24751195 GTTTGATGAG
24751205 ATAGCTCATTGTTATAT
1 ATAGCTCATTGTTATAT
24751222 ATAGCTCATTGTTATAT
1 ATAGCTCATTGTTATAT
24751239 GATGACGAGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.29, C:0.12, G:0.12, T:0.47
Consensus pattern (17 bp):
ATAGCTCATTGTTATAT
Found at i:24764359 original size:24 final size:23
Alignment explanation
Indices: 24764299--24764363 Score: 121
Period size: 23 Copynumber: 2.8 Consensus size: 23
24764289 CAACAACCGA
24764299 ATGTTGCACACATAGTGCTTATT
1 ATGTTGCACACATAGTGCTTATT
24764322 ATGTTGCACACATAGTGCTTATT
1 ATGTTGCACACATAGTGCTTATT
24764345 ATGTTCGCACACATAGTGC
1 ATGTT-GCACACATAGTGC
24764364 CATAGTAAAT
Statistics
Matches: 41, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
23 28 0.68
24 13 0.32
ACGTcount: A:0.26, C:0.20, G:0.18, T:0.35
Consensus pattern (23 bp):
ATGTTGCACACATAGTGCTTATT
Found at i:24764380 original size:24 final size:24
Alignment explanation
Indices: 24764349--24764411 Score: 117
Period size: 24 Copynumber: 2.6 Consensus size: 24
24764339 CTTATTATGT
24764349 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
*
24764373 TCGTACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
24764397 TCGCACACATAGTGC
1 TCGCACACATAGTGC
24764412 ATTTGAGATT
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 37 1.00
ACGTcount: A:0.35, C:0.25, G:0.17, T:0.22
Consensus pattern (24 bp):
TCGCACACATAGTGCCATAGTAAA
Found at i:24771901 original size:24 final size:24
Alignment explanation
Indices: 24771872--24771934 Score: 117
Period size: 24 Copynumber: 2.6 Consensus size: 24
24771862 CAACCGAATG
24771872 TCGCACACATAGTGCTTATTATGT
1 TCGCACACATAGTGCTTATTATGT
*
24771896 TTGCACACATAGTGCTTATTATGT
1 TCGCACACATAGTGCTTATTATGT
24771920 TCGCACACATAGTGC
1 TCGCACACATAGTGC
24771935 CATAGTAAAT
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 37 1.00
ACGTcount: A:0.25, C:0.22, G:0.17, T:0.35
Consensus pattern (24 bp):
TCGCACACATAGTGCTTATTATGT
Found at i:24771979 original size:24 final size:24
Alignment explanation
Indices: 24771920--24771981 Score: 117
Period size: 23 Copynumber: 2.6 Consensus size: 24
24771910 CTTATTATGT
24771920 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
24771944 TCG-ACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
24771967 TCGCACACATAGTGC
1 TCGCACACATAGTGC
24771982 ATTTGAGATT
Statistics
Matches: 37, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
23 23 0.62
24 14 0.38
ACGTcount: A:0.35, C:0.26, G:0.18, T:0.21
Consensus pattern (24 bp):
TCGCACACATAGTGCCATAGTAAA
Found at i:24779739 original size:27 final size:27
Alignment explanation
Indices: 24779721--24779817 Score: 176
Period size: 27 Copynumber: 3.6 Consensus size: 27
24779711 ATAGTGAGTC
24779721 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
24779748 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
24779775 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
24779803 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
24779818 GTACAAATTT
Statistics
Matches: 68, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
27 49 0.72
28 19 0.28
ACGTcount: A:0.31, C:0.27, G:0.13, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:24781394 original size:46 final size:46
Alignment explanation
Indices: 24781339--24781519 Score: 219
Period size: 46 Copynumber: 3.9 Consensus size: 46
24781329 TAGGATGGTT
24781339 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
* * *
24781385 GAGCGTCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAAC
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---C
* *
24781431 TAGGCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGC
1 GA-GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
*
24781478 GA--ATGCCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 GAGCAT--CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
24781520 GCGGGTTACA
Statistics
Matches: 115, Mismatches: 11, Indels: 18
0.80 0.08 0.12
Matches are distributed among these distances:
43 4 0.03
44 2 0.02
45 2 0.02
46 69 0.60
47 32 0.28
48 2 0.02
50 4 0.03
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (46 bp):
GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
Found at i:24781500 original size:93 final size:93
Alignment explanation
Indices: 24781341--24781511 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
24781331 GGATGGTTGA
* * *
24781341 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
24781406 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
24781434 GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAATGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
24781499 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
24781512 ACTTATGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:24784541 original size:33 final size:33
Alignment explanation
Indices: 24784499--24784564 Score: 105
Period size: 33 Copynumber: 2.0 Consensus size: 33
24784489 ACAATGCTGA
24784499 TGCCATGTTCCAAACATGGTCTTACACTAGCTC
1 TGCCATGTTCCAAACATGGTCTTACACTAGCTC
* * *
24784532 TGCCATGTTCTAAACATGGTTTTACACTGGCTC
1 TGCCATGTTCCAAACATGGTCTTACACTAGCTC
24784565 ACATATTGAA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.23, C:0.27, G:0.17, T:0.33
Consensus pattern (33 bp):
TGCCATGTTCCAAACATGGTCTTACACTAGCTC
Found at i:24784605 original size:48 final size:46
Alignment explanation
Indices: 24784532--24784760 Score: 199
Period size: 48 Copynumber: 4.8 Consensus size: 46
24784522 ACACTAGCTC
* * * *
24784532 TGCCATGTTCTAAACATGGTTTTACACTGGCTCACATATTGAA-GCTGA
1 TGCCATG-TCCAAACATGGTCTTACACTGGCTCACATA--AAATGCCGA
* * * *
24784580 TGCCATGTCCTAGACATGGTCTTACACTAGCTCTCATAACAATGCAGA
1 TGCCATGTCC-AAACATGGTCTTACACTGGCTCACATAA-AATGCCGA
* * *
24784628 TGCCATGTTCCAAACATTGTCTTACACTGGTTCACATAATAAGGCCGA
1 TGCCATG-TCCAAACATGGTCTTACACTGGCTCACATAA-AATGCCGA
* * * * * *
24784676 TGTCATCTCCCAGACATGGTCTTACACTAGCTCTCGTAAAAATGCCGA
1 TGCCATGT-CCAAACATGGTCTTACACTGGCTCACAT-AAAATGCCGA
*
24784724 TGCCATGTTCCAAACATGGTCTTACGCTGGCTCACAT
1 TGCCATG-TCCAAACATGGTCTTACACTGGCTCACAT
24784761 GTACCCTAAT
Statistics
Matches: 143, Mismatches: 31, Indels: 14
0.76 0.16 0.07
Matches are distributed among these distances:
47 5 0.03
48 132 0.92
49 6 0.04
ACGTcount: A:0.27, C:0.26, G:0.17, T:0.29
Consensus pattern (46 bp):
TGCCATGTCCAAACATGGTCTTACACTGGCTCACATAAAATGCCGA
Found at i:24784696 original size:96 final size:96
Alignment explanation
Indices: 24784532--24784760 Score: 325
Period size: 96 Copynumber: 2.4 Consensus size: 96
24784522 ACACTAGCTC
* * * * * *
24784532 TGCCATGTTCTAAACATGGTTTTACACTGGCTCACATATTGAAGCTGATGCCATGTCCTAGACAT
1 TGCCATGTTCCAAACATGGTCTTACACTGGCTCACATAATGAAGCCGATGCCATCTCCCAGACAT
*
24784597 GGTCTTACACTAGCTCTCATAACAATGCAGA
66 GGTCTTACACTAGCTCTCATAAAAATGCAGA
* * *
24784628 TGCCATGTTCCAAACATTGTCTTACACTGGTTCACATAAT-AAGGCCGATGTCATCTCCCAGACA
1 TGCCATGTTCCAAACATGGTCTTACACTGGCTCACATAATGAA-GCCGATGCCATCTCCCAGACA
* *
24784692 TGGTCTTACACTAGCTCTCGTAAAAATGCCGA
65 TGGTCTTACACTAGCTCTCATAAAAATGCAGA
*
24784724 TGCCATGTTCCAAACATGGTCTTACGCTGGCTCACAT
1 TGCCATGTTCCAAACATGGTCTTACACTGGCTCACAT
24784761 GTACCCTAAT
Statistics
Matches: 117, Mismatches: 15, Indels: 2
0.87 0.11 0.01
Matches are distributed among these distances:
95 2 0.02
96 115 0.98
ACGTcount: A:0.27, C:0.26, G:0.17, T:0.29
Consensus pattern (96 bp):
TGCCATGTTCCAAACATGGTCTTACACTGGCTCACATAATGAAGCCGATGCCATCTCCCAGACAT
GGTCTTACACTAGCTCTCATAAAAATGCAGA
Found at i:24792318 original size:48 final size:48
Alignment explanation
Indices: 24792232--24792680 Score: 349
Period size: 48 Copynumber: 9.5 Consensus size: 48
24792222 CATTTCCCAG
* * * * * * * *
24792232 ACATGGTCTTACACTTGCTCTCGTAATAATGCTAATGCCATATTCCAA
1 ACATGGTCTTACACTAGCTCACATATTGAGGCCAATGCCATGTTCCAA
* * * *
24792280 ACATGGTCTTACACTGGCTCACATATTGAGGCCGATGCCATGTCCCAG
1 ACATGGTCTTACACTAGCTCACATATTGAGGCCAATGCCATGTTCCAA
* *** ***
24792328 ACATGGTCTTACACTAGCTCTCATAACAATGTTGAA-GCCATGTTCCAA
1 ACATGGTCTTACACTAGCTCACATATTGA-GGCCAATGCCATGTTCCAA
*
24792376 ACATGGTCTTACACTAGCTCACATATTGAGGCCAATGCTATG-TCCAAA
1 ACATGGTCTTACACTAGCTCACATATTGAGGCCAATGCCATGTTCC-AA
* * *
24792424 ACATGGTCTTACACTAGCTCTCATA---A---CAATGCTA-ATTCCAA
1 ACATGGTCTTACACTAGCTCACATATTGAGGCCAATGCCATGTTCCAA
* * * * *
24792465 ATATGGTCTTACACTGGCTCACATATTGAGGTCGATGCCATGTCCCAA
1 ACATGGTCTTACACTAGCTCACATATTGAGGCCAATGCCATGTTCCAA
* * * *** *
24792513 ACATGGCCTTACGCTAGCTCTCATAACAATGCCAATGCCATGTTCCAA
1 ACATGGTCTTACACTAGCTCACATATTGAGGCCAATGCCATGTTCCAA
* ** * *
24792561 ACATGGTCTTACACTGGCTCACATATTGAGGCTGATGTCATGTCCCAA
1 ACATGGTCTTACACTAGCTCACATATTGAGGCCAATGCCATGTTCCAA
* * *** *** * *
24792609 ACATAGTGTTACACTAGCTCTTGTAACAATGCCAATGCCATGCTCCAA
1 ACATGGTCTTACACTAGCTCACATATTGAGGCCAATGCCATGTTCCAA
* *
24792657 ACATGGTCTTACACTGGTTCACAT
1 ACATGGTCTTACACTAGCTCACAT
24792681 GTACCCTAAC
Statistics
Matches: 305, Mismatches: 85, Indels: 22
0.74 0.21 0.05
Matches are distributed among these distances:
41 24 0.08
42 11 0.04
44 1 0.00
45 1 0.00
47 12 0.04
48 254 0.83
49 2 0.01
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.29
Consensus pattern (48 bp):
ACATGGTCTTACACTAGCTCACATATTGAGGCCAATGCCATGTTCCAA
Found at i:24792378 original size:96 final size:95
Alignment explanation
Indices: 24792214--24792680 Score: 590
Period size: 96 Copynumber: 4.9 Consensus size: 95
24792204 AGGGTAAGAT
* * * * * * *
24792214 GCCGATACCATTTCCCAGACATGGTCTTACACTTGCTCTCGTAATAATGCTAATGCCATATTCCA
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATAACAATG-TAATGCCATGTTCCA
24792279 AACATGGTCTTACACTGGCTCACATATTGAG
65 AACATGGTCTTACACTGGCTCACATATTGAG
*
24792310 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAACAATGTTGAA-GCCATGTTCC
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATAACAATG-T-AATGCCATGTTCC
*
24792374 AAACATGGTCTTACACTAGCTCACATATTGAG
64 AAACATGGTCTTACACTGGCTCACATATTGAG
* * *
24792406 GCCAATGCTATGTCCAAAACATGGTCTTACACTAGCTCTCATAACAATGCT-A----A--TTCCA
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATAACAATG-TAATGCCATGTTCCA
*
24792464 AATATGGTCTTACACTGGCTCACATATTGAG
65 AACATGGTCTTACACTGGCTCACATATTGAG
* * * *
24792495 GTCGATGCCATGTCCCAAACATGGCCTTACGCTAGCTCTCATAACAATGCCAATGCCATGTTCCA
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATAACAATG-TAATGCCATGTTCCA
24792560 AACATGGTCTTACACTGGCTCACATATTGAG
65 AACATGGTCTTACACTGGCTCACATATTGAG
* * * * ** * *
24792591 GCTGATGTCATGTCCCAAACATAGTGTTACACTAGCTCTTGTAACAATGCCAATGCCATGCTCCA
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATAACAATG-TAATGCCATGTTCCA
*
24792656 AACATGGTCTTACACTGGTTCACAT
65 AACATGGTCTTACACTGGCTCACAT
24792681 GTACCCTAAC
Statistics
Matches: 329, Mismatches: 34, Indels: 16
0.87 0.09 0.04
Matches are distributed among these distances:
89 78 0.24
90 1 0.00
91 1 0.00
94 2 0.01
96 245 0.74
97 2 0.01
ACGTcount: A:0.28, C:0.27, G:0.16, T:0.28
Consensus pattern (95 bp):
GCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATAACAATGTAATGCCATGTTCCAA
ACATGGTCTTACACTGGCTCACATATTGAG
Found at i:24792555 original size:185 final size:186
Alignment explanation
Indices: 24792232--24792680 Score: 589
Period size: 185 Copynumber: 2.4 Consensus size: 186
24792222 CATTTCCCAG
*
24792232 ACATGGTCTTACACTTGCTCTCGTAATAATGCTAATGCCATATTCCAAACATGGTCTTACACTGG
1 ACATGGTCTTACACTAGCTCTC---ATAA--C-AATGCCATATTCCAAACATGGTCTTACACTGG
* * **
24792297 CTCACATATTGAGGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAACAATGTTG
60 CTCACATATTGAGGCCGATGCCATGTCCCAAACATGGCCTTACACTAGCTCTCATAACAATGTCC
24792362 AAGCCATGTTCCAAACATGGTCTTACACTAGCTCACATATTGAGGCCAATG-CTATGTCCAAA
125 AAGCCATGTTCCAAACATGGTCTTACACTAGCTCACATATTGAGGCCAATGTC-ATGTCCAAA
* *
24792424 ACATGGTCTTACACTAGCTCTCATAACAATGCTA-ATTCCAAATATGGTCTTACACTGGCTCACA
1 ACATGGTCTTACACTAGCTCTCATAACAATGCCATATTCCAAACATGGTCTTACACTGGCTCACA
* *
24792488 TATTGAGGTCGATGCCATGTCCCAAACATGGCCTTACGCTAGCTCTCATAACAATG-CCAATGCC
66 TATTGAGGCCGATGCCATGTCCCAAACATGGCCTTACACTAGCTCTCATAACAATGTCCAA-GCC
* ** *
24792552 ATGTTCCAAACATGGTCTTACACTGGCTCACATATTGAGGCTGATGTCATGTCCCAA
130 ATGTTCCAAACATGGTCTTACACTAGCTCACATATTGAGGCCAATGTCATGTCCAAA
* * **
24792609 ACATAGTGTTACACTAGCTCTTGTAACAATGCCAATGCCATGCTCCAAACATGGTCTTACACTGG
1 ACATGGTCTTACACTAGCTCTCATAACAATGCC-AT---AT--TCCAAACATGGTCTTACACTGG
*
24792674 TTCACAT
60 CTCACAT
24792681 GTACCCTAAC
Statistics
Matches: 228, Mismatches: 20, Indels: 18
0.86 0.08 0.07
Matches are distributed among these distances:
184 2 0.01
185 163 0.71
186 8 0.04
187 1 0.00
189 4 0.02
190 2 0.01
192 48 0.21
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.29
Consensus pattern (186 bp):
ACATGGTCTTACACTAGCTCTCATAACAATGCCATATTCCAAACATGGTCTTACACTGGCTCACA
TATTGAGGCCGATGCCATGTCCCAAACATGGCCTTACACTAGCTCTCATAACAATGTCCAAGCCA
TGTTCCAAACATGGTCTTACACTAGCTCACATATTGAGGCCAATGTCATGTCCAAA
Found at i:24806315 original size:81 final size:81
Alignment explanation
Indices: 24806206--24806441 Score: 321
Period size: 81 Copynumber: 2.9 Consensus size: 81
24806196 CGGAATTGTG
* * * * * *
24806206 TCTTTCAGTGTTCTCTATATGCACTATTCCTTTAGTGTTCGCCATATAG-ACCATTCCTTTAGTT
1 TCTTTCAGAGTTCACCATATGTACTATTCCTTTAGTGTTTGCCATAT-GTACCATTCCTTTAGTG
*
24806270 TTTTCTATACGTACTAT
65 TTTTCCATACGTACTAT
* * *
24806287 TCTTTCAGAGTTCACCATATGTATTATTCCTTCAGTGTTTGTCATATGTACCATTCCTTTAGTGT
1 TCTTTCAGAGTTCACCATATGTACTATTCCTTTAGTGTTTGCCATATGTACCATTCCTTTAGTGT
*
24806352 TTTCCATGCGTACTAT
66 TTTCCATACGTACTAT
* * *
24806368 TCTTTCAGAGTTCACCATATGTGCTATTCCTTTAGTGTTTTCCATATGTACTATTCCTTTAGTGT
1 TCTTTCAGAGTTCACCATATGTACTATTCCTTTAGTGTTTGCCATATGTACCATTCCTTTAGTGT
*
24806433 TTACCATAC
66 TTTCCATAC
24806442 CATCTAGTCC
Statistics
Matches: 135, Mismatches: 19, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
80 1 0.01
81 134 0.99
ACGTcount: A:0.20, C:0.22, G:0.12, T:0.46
Consensus pattern (81 bp):
TCTTTCAGAGTTCACCATATGTACTATTCCTTTAGTGTTTGCCATATGTACCATTCCTTTAGTGT
TTTCCATACGTACTAT
Found at i:24806434 original size:27 final size:27
Alignment explanation
Indices: 24806207--24806440 Score: 197
Period size: 27 Copynumber: 8.6 Consensus size: 27
24806197 GGAATTGTGT
* * *
24806207 CTTTCAGTGTTCTCTATATGCACTATTC
1 CTTT-AGTGTTTTCCATATGTACTATTC
** *
24806235 CTTTAGTGTTCGCCATATAG-ACCATTC
1 CTTTAGTGTTTTCCATAT-GTACTATTC
* * *
24806262 CTTTAGTTTTTTCTATACGTACTATT-
1 CTTTAGTGTTTTCCATATGTACTATTC
* ** *
24806288 CTTTCAGAGTTCACCATATGTATTATTC
1 CTTT-AGTGTTTTCCATATGTACTATTC
* *
24806316 CTTCAGTGTTTGT-CATATGTACCATTC
1 CTTTAGTGTTT-TCCATATGTACTATTC
**
24806343 CTTTAGTGTTTTCCATGCGTACTATT-
1 CTTTAGTGTTTTCCATATGTACTATTC
* ** *
24806369 CTTTCAGAGTTCACCATATGTGCTATTC
1 CTTT-AGTGTTTTCCATATGTACTATTC
24806397 CTTTAGTGTTTTCCATATGTACTATTC
1 CTTTAGTGTTTTCCATATGTACTATTC
*
24806424 CTTTAGTGTTTACCATA
1 CTTTAGTGTTTTCCATA
24806441 CCATCTAGTC
Statistics
Matches: 161, Mismatches: 37, Indels: 17
0.75 0.17 0.08
Matches are distributed among these distances:
26 10 0.06
27 139 0.86
28 12 0.07
ACGTcount: A:0.20, C:0.21, G:0.12, T:0.46
Consensus pattern (27 bp):
CTTTAGTGTTTTCCATATGTACTATTC
Found at i:24806452 original size:27 final size:27
Alignment explanation
Indices: 24806341--24806453 Score: 68
Period size: 27 Copynumber: 4.2 Consensus size: 27
24806331 TATGTACCAT
* * *
24806341 TCCTTTAGTGTTTTCCATGCGTACTA-
1 TCCTTTAGTGTTTACCATACATACTAG
* * * ** * *
24806367 TTCTTTCAGAGTTCACCATATGTGCTAT
1 TCCTTT-AGTGTTTACCATACATACTAG
* ** *
24806395 TCCTTTAGTGTTTTCCATATGTACTAT
1 TCCTTTAGTGTTTACCATACATACTAG
24806422 TCCTTTAGTGTTTACCATACCAT-CTAG
1 TCCTTTAGTGTTTACCATA-CATACTAG
24806449 TCCTT
1 TCCTT
24806454 CAGAGCTAGC
Statistics
Matches: 68, Mismatches: 16, Indels: 5
0.76 0.18 0.06
Matches are distributed among these distances:
26 5 0.07
27 57 0.84
28 6 0.09
ACGTcount: A:0.19, C:0.23, G:0.12, T:0.46
Consensus pattern (27 bp):
TCCTTTAGTGTTTACCATACATACTAG
Found at i:24806453 original size:54 final size:54
Alignment explanation
Indices: 24806341--24806453 Score: 131
Period size: 54 Copynumber: 2.1 Consensus size: 54
24806331 TATGTACCAT
* ** *
24806341 TCCTTTAGTGTTTTCCATGCGTACTATTCTTTCAGAGTTCACCATATGTGCTAT
1 TCCTTTAGTGTTTTCCATACGTACTATTCTTTCAGAGTTCACCATACATGCTAG
* * *
24806395 TCCTTTAGTGTTTTCCATATGTACTATTCCTTT-AGTGTTTACCATACCAT-CTAG
1 TCCTTTAGTGTTTTCCATACGTACTATT-CTTTCAGAGTTCACCATA-CATGCTAG
24806449 TCCTT
1 TCCTT
24806454 CAGAGCTAGC
Statistics
Matches: 50, Mismatches: 7, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
54 45 0.90
55 5 0.10
ACGTcount: A:0.19, C:0.23, G:0.12, T:0.46
Consensus pattern (54 bp):
TCCTTTAGTGTTTTCCATACGTACTATTCTTTCAGAGTTCACCATACATGCTAG
Found at i:24806612 original size:28 final size:28
Alignment explanation
Indices: 24806575--24806640 Score: 82
Period size: 27 Copynumber: 2.4 Consensus size: 28
24806565 TTTAGACTGT
* *
24806575 GCCACGAAGGCCTTTC-TTTCCATAGATC
1 GCCACAAAGGCCTTACATTT-CATAGATC
*
24806603 GCCACAAAGG-CTTACATTTCATAGATT
1 GCCACAAAGGCCTTACATTTCATAGATC
24806630 GCCACAAAGGC
1 GCCACAAAGGC
24806641 TTCTGTTTCT
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
27 21 0.64
28 12 0.36
ACGTcount: A:0.29, C:0.29, G:0.18, T:0.24
Consensus pattern (28 bp):
GCCACAAAGGCCTTACATTTCATAGATC
Found at i:24806801 original size:50 final size:50
Alignment explanation
Indices: 24806742--24806842 Score: 139
Period size: 50 Copynumber: 2.0 Consensus size: 50
24806732 TTCTTTTTTT
* * ** *
24806742 TCTTTCCATATGATGCCATAACCCACTAGTTATGGTCTTATACGATATGG
1 TCTTTCCATATGACGCCATAACCCACCAACTATGGTCTTACACGATATGG
* *
24806792 TCTTTCCATATGACGCCGTAGCCCACCAACTATGGTCTTACACGATATGG
1 TCTTTCCATATGACGCCATAACCCACCAACTATGGTCTTACACGATATGG
24806842 T
1 T
24806843 GTCATGAACT
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
50 44 1.00
ACGTcount: A:0.25, C:0.26, G:0.17, T:0.33
Consensus pattern (50 bp):
TCTTTCCATATGACGCCATAACCCACCAACTATGGTCTTACACGATATGG
Found at i:24809475 original size:39 final size:39
Alignment explanation
Indices: 24809376--24809566 Score: 172
Period size: 40 Copynumber: 4.8 Consensus size: 39
24809366 CGAATGATGT
* * * * *
24809376 CCGGGCTAAGTCCTGAAGGCCTT-GTGCTAAGTGACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGC-GAGTTACTA-AA
* * *
24809416 CCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATAAA
1 CCGGGCTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAA
* *
24809455 TCCGGGCTAAG-CCCGAAGGCATTTGTGCAAGTTACTAAA
1 -CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
*
24809494 CCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTA-AA
** * *
24809535 CCGGGCTTTGTCCCGAAGGCATTTGAGCGAGT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGT
24809567 CGTTATATCC
Statistics
Matches: 123, Mismatches: 22, Indels: 12
0.78 0.14 0.08
Matches are distributed among these distances:
39 34 0.28
40 82 0.67
41 7 0.06
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
Found at i:24817491 original size:38 final size:40
Alignment explanation
Indices: 24817393--24817571 Score: 176
Period size: 38 Copynumber: 4.6 Consensus size: 40
24817383 TCGAATGATG
* * *
24817393 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGC-AAGTTACTAAA
* * *
24817433 TCCGGACTAGGAT-CCGAAGGCATTCGTGC-AGTTAATAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTCGTGCAAGTTACTAAA
*
24817472 TCCGGGCTAAG-CCCGAAGGCATT-TTGCAAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCAAGTTACTAAA
* * *
24817510 CCCGGGTTAAGTCCCGAAGGCATTCGTGCGAG-TACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCAAGTTACTA-AA
*
24817550 -CCGGGCT-TGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
24817572 TGAGCGAGTC
Statistics
Matches: 116, Mismatches: 16, Indels: 16
0.78 0.11 0.11
Matches are distributed among these distances:
37 3 0.03
38 43 0.37
39 39 0.34
40 24 0.21
41 7 0.06
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCAAGTTACTAAA
Found at i:24817533 original size:77 final size:81
Alignment explanation
Indices: 24817393--24817573 Score: 209
Period size: 77 Copynumber: 2.3 Consensus size: 81
24817383 TCGAATGATG
* * *
24817393 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
24817457 CGTGC-AGTTAATA-AA
66 CGTGCGAG-TAATATAA
* **
24817472 TCCGGGCTAAG-CCCGAAGGCATTT-TGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCAT
*
24817533 TCGTGCGAGTACTATAA
65 TCGTGCGAGTAATATAA
*
24817550 -CCGGGCT-TGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
24817574 AGCGAGTCGT
Statistics
Matches: 88, Mismatches: 8, Indels: 13
0.81 0.07 0.12
Matches are distributed among these distances:
76 2 0.02
77 56 0.64
78 16 0.18
79 14 0.16
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTAATATAA
Found at i:24821937 original size:39 final size:39
Alignment explanation
Indices: 24821879--24821970 Score: 150
Period size: 39 Copynumber: 2.4 Consensus size: 39
24821869 CAAGACACTG
*
24821879 GAAATGTATCCGGGCTAAAGT-CTCGCAGGCTTCGTGCTA
1 GAAATGTATCCGGGATAAAGTCCT-GCAGGCTTCGTGCTA
*
24821918 GAAATGTATCCGGGATAAAGTCCTGCAGGCTTCGTGCTG
1 GAAATGTATCCGGGATAAAGTCCTGCAGGCTTCGTGCTA
24821957 GAAATGTATCCGGG
1 GAAATGTATCCGGG
24821971 CAATGTATCC
Statistics
Matches: 50, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
39 48 0.96
40 2 0.04
ACGTcount: A:0.24, C:0.21, G:0.30, T:0.25
Consensus pattern (39 bp):
GAAATGTATCCGGGATAAAGTCCTGCAGGCTTCGTGCTA
Found at i:24821977 original size:13 final size:13
Alignment explanation
Indices: 24821959--24821984 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
24821949 TCGTGCTGGA
24821959 AATGTATCCGGGC
1 AATGTATCCGGGC
24821972 AATGTATCCGGGC
1 AATGTATCCGGGC
24821985 TAAAGTCCCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.23, G:0.31, T:0.23
Consensus pattern (13 bp):
AATGTATCCGGGC
Found at i:24822000 original size:52 final size:52
Alignment explanation
Indices: 24821920--24822019 Score: 164
Period size: 52 Copynumber: 1.9 Consensus size: 52
24821910 TCGTGCTAGA
**
24821920 AATGTATCCGGGATAAAGTCCTGCAGGCTTCGTGCTGGAAATGTATCCGGGC
1 AATGTATCCGGGATAAAGTCCCACAGGCTTCGTGCTGGAAATGTATCCGGGC
* *
24821972 AATGTATCCGGGCTAAAGTCCCATAGGCTTCGTGCTGGAAATGTATCC
1 AATGTATCCGGGATAAAGTCCCACAGGCTTCGTGCTGGAAATGTATCC
24822020 AGGCTAAAGT
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
52 44 1.00
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (52 bp):
AATGTATCCGGGATAAAGTCCCACAGGCTTCGTGCTGGAAATGTATCCGGGC
Found at i:24822026 original size:39 final size:39
Alignment explanation
Indices: 24821972--24822048 Score: 118
Period size: 39 Copynumber: 2.0 Consensus size: 39
24821962 GTATCCGGGC
* *
24821972 AATGTATCCGGGCTAAAGTCCCATAGGCTTCGTGCTGGA
1 AATGTATCCAGGCTAAAGTCCCACAGGCTTCGTGCTGGA
* *
24822011 AATGTATCCAGGCTAAAGTCCCGCAGGCTTTGTGCTGG
1 AATGTATCCAGGCTAAAGTCCCACAGGCTTCGTGCTGG
24822049 TAATATAATT
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 34 1.00
ACGTcount: A:0.22, C:0.23, G:0.29, T:0.26
Consensus pattern (39 bp):
AATGTATCCAGGCTAAAGTCCCACAGGCTTCGTGCTGGA
Found at i:24822037 original size:91 final size:91
Alignment explanation
Indices: 24821881--24822048 Score: 264
Period size: 91 Copynumber: 1.8 Consensus size: 91
24821871 AGACACTGGA
* * * *
24821881 AATGTATCCGGGCTAAAGTCTCGCAGGCTTCGTGCTAGAAATGTATCCGGGATAAAGTCCTGCAG
1 AATGTATCCGGGCTAAAGTCCCACAGGCTTCGTGCTAGAAATGTATCCAGGATAAAGTCCCGCAG
24821946 GCTTCGTGCTGGAAATGTATCCGGGC
66 GCTTCGTGCTGGAAATGTATCCGGGC
* * *
24821972 AATGTATCCGGGCTAAAGTCCCATAGGCTTCGTGCTGGAAATGTATCCAGGCTAAAGTCCCGCAG
1 AATGTATCCGGGCTAAAGTCCCACAGGCTTCGTGCTAGAAATGTATCCAGGATAAAGTCCCGCAG
*
24822037 GCTTTGTGCTGG
66 GCTTCGTGCTGG
24822049 TAATATAATT
Statistics
Matches: 69, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
91 69 1.00
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.26
Consensus pattern (91 bp):
AATGTATCCGGGCTAAAGTCCCACAGGCTTCGTGCTAGAAATGTATCCAGGATAAAGTCCCGCAG
GCTTCGTGCTGGAAATGTATCCGGGC
Found at i:24830283 original size:46 final size:47
Alignment explanation
Indices: 24830216--24830438 Score: 169
Period size: 46 Copynumber: 4.8 Consensus size: 47
24830206 TGTAACCCGC
* * *
24830216 CCATAAGCGAACTCAGACTCAACTCAACGAGCTCGG-GCGTTCACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGAGCGTTCACAT
*
24830262 CCATAAGTGAACTCGGACTCAACTCAACAAGCTT-GGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAG-TTCGGA-G-C--GTTCACAT
* * * * * *
24830312 -C-TGA-CGAACTCGGACTCAACTCAATGAGTTTGGATGCCTAGTGACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA-GCGT--TCACAT
* * * *
24830359 -C-TCA-TGAACTCGGACTCAACTCAACGAGTTCAGA-TGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGAGCGTTCACAT
*
24830402 CCATAAGTGAACTCGGACTTAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
24830439 TGCCCAAATA
Statistics
Matches: 143, Mismatches: 21, Indels: 26
0.75 0.11 0.14
Matches are distributed among these distances:
43 4 0.03
44 2 0.01
45 3 0.02
46 62 0.43
47 60 0.42
48 3 0.02
49 2 0.01
50 4 0.03
51 3 0.02
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.23
Consensus pattern (47 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGAGCGTTCACAT
Found at i:24830388 original size:47 final size:47
Alignment explanation
Indices: 24830269--24830388 Score: 186
Period size: 47 Copynumber: 2.6 Consensus size: 47
24830259 CATCCATAAG
* * * *
24830269 TGAACTCGGACTCAACTCAACAAGCTTGGATGCCTAGTTACATCTGA
1 TGAACTCGGACTCAACTCAACGAGTTTGGATGCCTAGTGACATCTCA
* *
24830316 CGAACTCGGACTCAACTCAATGAGTTTGGATGCCTAGTGACATCTCA
1 TGAACTCGGACTCAACTCAACGAGTTTGGATGCCTAGTGACATCTCA
24830363 TGAACTCGGACTCAACTCAACGAGTT
1 TGAACTCGGACTCAACTCAACGAGTT
24830389 CAGATGTTCG
Statistics
Matches: 65, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
47 65 1.00
ACGTcount: A:0.29, C:0.26, G:0.20, T:0.25
Consensus pattern (47 bp):
TGAACTCGGACTCAACTCAACGAGTTTGGATGCCTAGTGACATCTCA
Found at i:24832571 original size:50 final size:49
Alignment explanation
Indices: 24832505--24832683 Score: 250
Period size: 49 Copynumber: 3.6 Consensus size: 49
24832495 AAAACTGTGA
* * **
24832505 TCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTATCAGATGGTTAGG
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACATGTATCGGATAATT-GG
* * *
24832555 TCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTATCGGATAATTGG
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACATGTATCGGATAATTGG
* *
24832604 TCACATGTGTAGTACTAAGTGCAGGCTACTACATGTACCGGATAATTGT
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACATGTATCGGATAATTGG
* *
24832653 TCGCATGTGTAGTACTATGTGCAGGCTACTA
1 TCACATGTGTAGTACTAAGTGCAGGCTACTA
24832684 TGCGTACCAG
Statistics
Matches: 117, Mismatches: 12, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
49 75 0.64
50 42 0.36
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.31
Consensus pattern (49 bp):
TCACATGTGTAGTACTAAGTGCAGGCTACTACATGTATCGGATAATTGG
Found at i:24832630 original size:49 final size:49
Alignment explanation
Indices: 24832452--24832683 Score: 248
Period size: 49 Copynumber: 4.7 Consensus size: 49
24832442 TCTATTGTGA
* * * *** * *
24832452 GGTCGCATGTGTAGGACTAAGTGCTGGCTACTATGCGTACCTGAAAACTGT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACATGTACCGGATAA-T-T
* * * * **
24832503 GATCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTATCAGATGGTT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACATGTACCGGATAATT
* * * *
24832552 AGGTCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTATCGGATAATT
1 -GGTCACATGTGTAGTACTAAGTGCAGGCTACTACATGTACCGGATAATT
24832602 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACATGTACCGGATAATT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACATGTACCGGATAATT
* * *
24832651 GTTCGCATGTGTAGTACTATGTGCAGGCTACTA
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTA
24832684 TGCGTACCAG
Statistics
Matches: 154, Mismatches: 26, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
49 76 0.49
50 44 0.29
51 34 0.22
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.30
Consensus pattern (49 bp):
GGTCACATGTGTAGTACTAAGTGCAGGCTACTACATGTACCGGATAATT
Found at i:24834929 original size:27 final size:27
Alignment explanation
Indices: 24834891--24835019 Score: 102
Period size: 27 Copynumber: 4.8 Consensus size: 27
24834881 CCTAATAGAG
*
24834891 TATCTCGTGTTTAACATCCCATCAGAC
1 TATCTCATGTTTAACATCCCATCAGAC
* *
24834918 TATCTCATGTTTACCATCTCATCA-AGC
1 TATCTCATGTTTAACATCCCATCAGA-C
* * *
24834945 TATAC-CATGTTTAACGTCCCGTTAGAC
1 TAT-CTCATGTTTAACATCCCATCAGAC
* ** ** *
24834972 TATCTCGTGTTTAATGT-CTGTCAAAC
1 TATCTCATGTTTAACATCCCATCAGAC
*
24834998 TATCTCATGCTTAACATCCCAT
1 TATCTCATGTTTAACATCCCAT
24835020 TGAACTATCC
Statistics
Matches: 78, Mismatches: 19, Indels: 10
0.73 0.18 0.09
Matches are distributed among these distances:
26 21 0.27
27 55 0.71
28 2 0.03
ACGTcount: A:0.26, C:0.27, G:0.11, T:0.36
Consensus pattern (27 bp):
TATCTCATGTTTAACATCCCATCAGAC
Found at i:24835220 original size:45 final size:45
Alignment explanation
Indices: 24835171--24835256 Score: 127
Period size: 45 Copynumber: 1.9 Consensus size: 45
24835161 TCCTAACTAC
* * **
24835171 CATGATGTCATAGCATCTTTCAGTTATGGTCTTACTCATTTCCGT
1 CATGATATCATAGCATCTTTCAGCTATACTCTTACTCATTTCCGT
*
24835216 CATGATATCATAGTATCTTTCAGCTATACTCTTACTCATTT
1 CATGATATCATAGCATCTTTCAGCTATACTCTTACTCATTT
24835257 TAAGCGTATA
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
45 36 1.00
ACGTcount: A:0.23, C:0.22, G:0.12, T:0.43
Consensus pattern (45 bp):
CATGATATCATAGCATCTTTCAGCTATACTCTTACTCATTTCCGT
Found at i:24838231 original size:9 final size:9
Alignment explanation
Indices: 24838217--24838243 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
24838207 GCTAACCCAA
24838217 TGATCAATT
1 TGATCAATT
24838226 TGATCAATT
1 TGATCAATT
24838235 TGATCAATT
1 TGATCAATT
24838244 GGTGAAGTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.33, C:0.11, G:0.11, T:0.44
Consensus pattern (9 bp):
TGATCAATT
Found at i:24841212 original size:46 final size:46
Alignment explanation
Indices: 24841156--24841328 Score: 199
Period size: 46 Copynumber: 3.7 Consensus size: 46
24841146 TGGTTGAGCA
*
24841156 TCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
* * * *
24841202 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--ATG
* *
24841247 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAATG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
* * *
24841295 CCCGAGCTCGTTGAGTTGAGCCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
24841329 GGGGCGGGTT
Statistics
Matches: 106, Mismatches: 14, Indels: 14
0.79 0.10 0.10
Matches are distributed among these distances:
43 6 0.06
45 4 0.04
46 58 0.55
47 29 0.27
48 4 0.04
50 5 0.05
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
Found at i:24841312 original size:93 final size:93
Alignment explanation
Indices: 24841153--24841323 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
24841143 GGATGGTTGA
*
24841153 GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCAAATGCCCGAACTCGTTGAGT
*
24841218 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGCCCGAGTTCGTGAGATGTAACTAG
* * * *
24841246 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAATGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCAAATGCCCGAACTCGTTGAGT
24841311 TGAGCCCGAGTTC
66 TGAGCCCGAGTTC
24841324 ACTTAGGGGC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCAAATGCCCGAACTCGTTGAGT
TGAGCCCGAGTTCGTGAGATGTAACTAG
Found at i:24848755 original size:46 final size:45
Alignment explanation
Indices: 24848705--24848875 Score: 202
Period size: 46 Copynumber: 3.8 Consensus size: 45
24848695 TGGTTGAGCA
24848705 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAT-GATGCAAATG
* * * *
24848751 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA-GATGTAACTAG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGATGCAAAT-G
* * * *
24848795 GCATCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGATGCGAACG
1 TC--CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGATGCAAATG
* *
24848842 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
24848876 GGGGCGGGTT
Statistics
Matches: 106, Mismatches: 14, Indels: 11
0.81 0.11 0.08
Matches are distributed among these distances:
43 7 0.07
44 2 0.02
45 32 0.30
46 56 0.53
47 4 0.04
48 5 0.05
ACGTcount: A:0.22, C:0.20, G:0.27, T:0.30
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGATGCAAATG
Found at i:24853916 original size:48 final size:48
Alignment explanation
Indices: 24853775--24853929 Score: 211
Period size: 48 Copynumber: 3.2 Consensus size: 48
24853765 ATATATACAC
* * **
24853775 ATCTCATACATATTTCACATTAACCATTTGGCTTTACCACATATGCAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
** * *
24853823 GGCTCATACATATTTCACATTAGCCTTTCGACTTTACCACATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
*
24853871 ATCTCATACATATTTTACATTAGCCATTCGGCTTTACCACATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
* *
24853919 ATATCTTACAT
1 ATCTCATACAT
24853930 CAGCAATTTC
Statistics
Matches: 92, Mismatches: 15, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
48 92 1.00
ACGTcount: A:0.31, C:0.24, G:0.06, T:0.39
Consensus pattern (48 bp):
ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
Found at i:24855238 original size:26 final size:27
Alignment explanation
Indices: 24855193--24855245 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
24855183 TTAAATTCTG
* *
24855193 GCATGCATTCGGACACTTAAAAATTCA
1 GCATACATTCGAACACTTAAAAATTCA
*
24855220 GCATACATTCGAACA-TTAAAATTTCA
1 GCATACATTCGAACACTTAAAAATTCA
24855246 CTAGCTGACA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
26 10 0.43
27 13 0.57
ACGTcount: A:0.40, C:0.21, G:0.11, T:0.28
Consensus pattern (27 bp):
GCATACATTCGAACACTTAAAAATTCA
Found at i:24856923 original size:39 final size:39
Alignment explanation
Indices: 24856869--24856948 Score: 160
Period size: 39 Copynumber: 2.1 Consensus size: 39
24856859 TCTCGCACAC
24856869 ATAGTGCTCGGTTGAAGAACTTGCACACACAGTGCCTCA
1 ATAGTGCTCGGTTGAAGAACTTGCACACACAGTGCCTCA
24856908 ATAGTGCTCGGTTGAAGAACTTGCACACACAGTGCCTCA
1 ATAGTGCTCGGTTGAAGAACTTGCACACACAGTGCCTCA
24856947 AT
1 AT
24856949 TACCGATTTC
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 41 1.00
ACGTcount: A:0.29, C:0.25, G:0.23, T:0.24
Consensus pattern (39 bp):
ATAGTGCTCGGTTGAAGAACTTGCACACACAGTGCCTCA
Found at i:24857340 original size:40 final size:40
Alignment explanation
Indices: 24857283--24857401 Score: 150
Period size: 40 Copynumber: 3.0 Consensus size: 40
24857273 AGATTTTGTC
* *
24857283 CCAGTACGAATGC-CTTCGGGGCTTAGCCCGGATACATCA
1 CCAGTACGAATGCTCTTCGGGACTTAGCCCGGATACAACA
* *
24857322 CCAGTACGAATGCTCTTCGGGACTTAGCCCAGATATAACA
1 CCAGTACGAATGCTCTTCGGGACTTAGCCCGGATACAACA
* * * * *
24857362 CCAGCACGATTGCTCTTCGAGACTTAGCCCGAATATAACA
1 CCAGTACGAATGCTCTTCGGGACTTAGCCCGGATACAACA
24857402 TACTGAACTT
Statistics
Matches: 70, Mismatches: 9, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
39 13 0.19
40 57 0.81
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (40 bp):
CCAGTACGAATGCTCTTCGGGACTTAGCCCGGATACAACA
Found at i:24858544 original size:48 final size:48
Alignment explanation
Indices: 24858403--24858546 Score: 198
Period size: 48 Copynumber: 3.0 Consensus size: 48
24858393 ATATATACAC
* * * **
24858403 ATCTCATACATATTTCACATTAACCATTTGGATTTACCACATATGCAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
** *
24858451 GGCTCATACATATTTCACATTAGCCTTTCGGCTTTACCACATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
* *
24858499 ATCTTATACATATTTTACATTAGCCATTCGGCTTTACCACATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
24858547 CTCTTGTACA
Statistics
Matches: 83, Mismatches: 13, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
48 83 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.39
Consensus pattern (48 bp):
ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
Found at i:24860948 original size:19 final size:19
Alignment explanation
Indices: 24860902--24860973 Score: 67
Period size: 19 Copynumber: 3.7 Consensus size: 19
24860892 TATATATTAC
*
24860902 TATTATATATTATTTTCCTCA
1 TATTAT-TATTATTTT-CACA
* * *
24860923 AATTATTATTATTTTTATA
1 TATTATTATTATTTTCACA
24860942 TATTATTA-TATTTTCACA
1 TATTATTATTATTTTCACA
24860960 TA-TATTATATATTT
1 TATTATTAT-TATTT
24860974 ATTAATTATT
Statistics
Matches: 42, Mismatches: 7, Indels: 6
0.76 0.13 0.11
Matches are distributed among these distances:
17 5 0.12
18 10 0.24
19 13 0.31
20 9 0.21
21 5 0.12
ACGTcount: A:0.33, C:0.07, G:0.00, T:0.60
Consensus pattern (19 bp):
TATTATTATTATTTTCACA
Found at i:24861141 original size:3 final size:3
Alignment explanation
Indices: 24861127--24861161 Score: 61
Period size: 3 Copynumber: 11.3 Consensus size: 3
24861117 TTATGATTAC
24861127 ATT ATAT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT AT-T ATT ATT ATT ATT ATT ATT ATT ATT ATT A
24861162 AATCATATTT
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
3 28 0.90
4 3 0.10
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (3 bp):
ATT
Found at i:24861141 original size:21 final size:22
Alignment explanation
Indices: 24861106--24861161 Score: 62
Period size: 21 Copynumber: 2.6 Consensus size: 22
24861096 TGTATCACCA
* *
24861106 ATTATATTTTTTTATGATTA-C
1 ATTATATATTATTATGATTATC
* *
24861127 ATTATATATTATTATTATTATT
1 ATTATATATTATTATGATTATC
24861149 ATTAT-TATTATTA
1 ATTATATATTATTA
24861162 AATCATATTT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
21 25 0.83
22 5 0.17
ACGTcount: A:0.34, C:0.02, G:0.02, T:0.62
Consensus pattern (22 bp):
ATTATATATTATTATGATTATC
Found at i:24861619 original size:45 final size:45
Alignment explanation
Indices: 24861568--24861657 Score: 180
Period size: 45 Copynumber: 2.0 Consensus size: 45
24861558 CTTATATATC
24861568 ATGCATTATTTAATTATTACCTTGTATGTTTGTATATTTTGTTTA
1 ATGCATTATTTAATTATTACCTTGTATGTTTGTATATTTTGTTTA
24861613 ATGCATTATTTAATTATTACCTTGTATGTTTGTATATTTTGTTTA
1 ATGCATTATTTAATTATTACCTTGTATGTTTGTATATTTTGTTTA
24861658 TTCATTCTCA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 45 1.00
ACGTcount: A:0.24, C:0.07, G:0.11, T:0.58
Consensus pattern (45 bp):
ATGCATTATTTAATTATTACCTTGTATGTTTGTATATTTTGTTTA
Found at i:24873391 original size:119 final size:119
Alignment explanation
Indices: 24873175--24873771 Score: 989
Period size: 119 Copynumber: 5.0 Consensus size: 119
24873165 AAATAAATTG
* ** ** *
24873175 AAGACAGCAGATCTAGA-CTTCAGACATTTATGTTGAAGCAGATCCAAGATGTTTTGGTATTCTT
1 AAGATAGCAGATCTA-ACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTT
* * *
24873239 GTGTTTACAAGAAAGAAGTCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCA
65 GTGTTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCA
*
24873294 AAGATAGCAGATCTAACCTTCAAATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTG
1 AAGATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTG
24873359 TGTTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCA
66 TGTTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCA
* * *
24873413 AAAATAGTAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGATATTCTTG
1 AAGATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTG
*
24873478 TGTTTACAAGGAACAAATTGAGGACATAGCAGATTTGACTCTCAGACGTTCTCA
66 TGTTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCA
*
24873532 AAGATAGCAGATCTAACCTTCAGATGTTTATACTAAAGCAGATCCAAGATGATTTGGTATTCTTG
1 AAGATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTG
24873597 TGTTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCA
66 TGTTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCA
* *
24873651 AATATAACAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTG
1 AAGATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTG
* * * *
24873716 TGTTTACAAGAAACAAATCGAAGACATAGCAGATTTGACTCTCAAATGTTCTCA
66 TGTTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCA
24873770 AA
1 AA
24873772 CAGACTCAAG
Statistics
Matches: 450, Mismatches: 27, Indels: 2
0.94 0.06 0.00
Matches are distributed among these distances:
118 1 0.00
119 449 1.00
ACGTcount: A:0.34, C:0.17, G:0.19, T:0.30
Consensus pattern (119 bp):
AAGATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTG
TGTTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCA
Found at i:24873806 original size:83 final size:83
Alignment explanation
Indices: 24873695--24873880 Score: 282
Period size: 83 Copynumber: 2.2 Consensus size: 83
24873685 GAAGCAGATC
* * * *
24873695 CAAGATGATTTGGTATTCTTGTGTTTACAAGAAACAAATCGAAGACATAGCAGATTTGACTCTCA
1 CAAGATGATTTGGCATCCTTGTGCTTACAAGAAACAAATCGAAGACATAGCAGATATGACTCTCA
24873760 AATGTTCTCAAACAGACT
66 AATGTTCTCAAACAGACT
* * * * *
24873778 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTTA
1 CAAGATGATTTGGCATCCTTGTGCTTACAAGAAACAAATCGAAGACATAGCAGATATGACTCTCA
24873843 AATGTTCTCAAACAGACT
66 AATGTTCTCAAACAGACT
*
24873861 CAAGATGATTTGACATCCTT
1 CAAGATGATTTGGCATCCTT
24873881 ACTTATCAAA
Statistics
Matches: 92, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
83 92 1.00
ACGTcount: A:0.34, C:0.18, G:0.18, T:0.30
Consensus pattern (83 bp):
CAAGATGATTTGGCATCCTTGTGCTTACAAGAAACAAATCGAAGACATAGCAGATATGACTCTCA
AATGTTCTCAAACAGACT
Found at i:24875638 original size:19 final size:19
Alignment explanation
Indices: 24875592--24875663 Score: 67
Period size: 19 Copynumber: 3.7 Consensus size: 19
24875582 TATATATTAC
*
24875592 TATTATATATTATTTTCCTCA
1 TATTAT-TATTATTTT-CACA
* * *
24875613 AATTATTATTATTTTTATA
1 TATTATTATTATTTTCACA
24875632 TATTATTA-TATTTTCACA
1 TATTATTATTATTTTCACA
24875650 TA-TATTATATATTT
1 TATTATTAT-TATTT
24875664 ATTAATTATT
Statistics
Matches: 42, Mismatches: 7, Indels: 6
0.76 0.13 0.11
Matches are distributed among these distances:
17 5 0.12
18 10 0.24
19 13 0.31
20 9 0.21
21 5 0.12
ACGTcount: A:0.33, C:0.07, G:0.00, T:0.60
Consensus pattern (19 bp):
TATTATTATTATTTTCACA
Found at i:24875825 original size:21 final size:21
Alignment explanation
Indices: 24875790--24875830 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
24875780 TGTATCGCCA
* *
24875790 ATTATATTTTTTTATGATTAC
1 ATTATATATTATTATGATTAC
*
24875811 ATTATATATTATTATTATTA
1 ATTATATATTATTATGATTA
24875831 TTATTAAATC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.34, C:0.02, G:0.02, T:0.61
Consensus pattern (21 bp):
ATTATATATTATTATGATTAC
Found at i:24891498 original size:24 final size:23
Alignment explanation
Indices: 24891466--24891574 Score: 137
Period size: 24 Copynumber: 4.6 Consensus size: 23
24891456 ACCAAACGTT
* **
24891466 GCACACATAGTGCTTATTATGTTC
1 GCACACATAGTGCTTAGTA-AATC
*
24891490 GCACACATAGTGCCATAGTAAATC
1 GCACACATAGTG-CTTAGTAAATC
24891514 GCACACATAGTGCTATAGTAAATC
1 GCACACATAGTGCT-TAGTAAATC
*
24891538 GCACACATAGTGCCATAGTAAATC
1 GCACACATAGTG-CTTAGTAAATC
24891562 GCACACATAGTGC
1 GCACACATAGTGC
24891575 ATTTGAGATT
Statistics
Matches: 76, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
23 2 0.03
24 68 0.89
25 6 0.08
ACGTcount: A:0.34, C:0.24, G:0.17, T:0.25
Consensus pattern (23 bp):
GCACACATAGTGCTTAGTAAATC
Found at i:24891540 original size:48 final size:48
Alignment explanation
Indices: 24891466--24891574 Score: 175
Period size: 48 Copynumber: 2.3 Consensus size: 48
24891456 ACCAAACGTT
* **
24891466 GCACACATAGTGCTTATTATGTTCGCACACATAGTGCCATAGTAAATC
1 GCACACATAGTGCTTAGTATAATCGCACACATAGTGCCATAGTAAATC
24891514 GCACACATAGTGCTATAGTA-AATCGCACACATAGTGCCATAGTAAATC
1 GCACACATAGTGCT-TAGTATAATCGCACACATAGTGCCATAGTAAATC
24891562 GCACACATAGTGC
1 GCACACATAGTGC
24891575 ATTTGAGATT
Statistics
Matches: 57, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
48 53 0.93
49 4 0.07
ACGTcount: A:0.34, C:0.24, G:0.17, T:0.25
Consensus pattern (48 bp):
GCACACATAGTGCTTAGTATAATCGCACACATAGTGCCATAGTAAATC
Found at i:24894490 original size:39 final size:39
Alignment explanation
Indices: 24894436--24894579 Score: 234
Period size: 39 Copynumber: 3.7 Consensus size: 39
24894426 GAATGTTCGA
24894436 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
* * *
24894475 GTGATACCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
24894514 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
24894553 GTGATATCCGGGTTAAGTCCCGAAGGC
1 GTGATATCCGGGCTAAG-CCCGAAGGC
24894580 CTTTGTGCGG
Statistics
Matches: 95, Mismatches: 9, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 86 0.91
40 9 0.09
ACGTcount: A:0.26, C:0.22, G:0.30, T:0.22
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
Found at i:24894526 original size:78 final size:79
Alignment explanation
Indices: 24894437--24894593 Score: 262
Period size: 78 Copynumber: 2.0 Consensus size: 79
24894427 AATGTTCGAG
24894437 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATACCCGGGCTAAG-CCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATACCCGGGCTAAGTCCCGAAGGC
24894501 AATTGTGCGAGTTA
66 AATTGTGCGAGTTA
* *
24894515 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGTTAAGTCCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATACCCGGGCTAAGTCCCGAAGGC
** *
24894580 CTTTGTGCGGGTTA
66 AATTGTGCGAGTTA
24894594 CCATAACCGG
Statistics
Matches: 73, Mismatches: 5, Indels: 1
0.92 0.06 0.01
Matches are distributed among these distances:
78 53 0.73
79 20 0.27
ACGTcount: A:0.25, C:0.21, G:0.30, T:0.24
Consensus pattern (79 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATACCCGGGCTAAGTCCCGAAGGC
AATTGTGCGAGTTA
Found at i:24894606 original size:78 final size:78
Alignment explanation
Indices: 24894443--24894617 Score: 244
Period size: 78 Copynumber: 2.2 Consensus size: 78
24894433 CGAGTGATAT
24894443 CCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATACCCGGGCTAAGCCCGAAGGCAATTGTG
1 CCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATACCCGGGCTAAGCCCGAAGGCAATTGTG
** *
24894508 CGAGTTATGATAT
66 CGAGTTACCATAA
* * **
24894521 CCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGTTAAGTCCCGAAGGCCTTTGT
1 CCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATACCCGGGCTAAG-CCCGAAGGCAATTGT
*
24894586 GCGGGTTACCATAA
65 GCGAGTTACCATAA
*
24894600 CC-GGCTATGTCCCGAAGG
1 CCGGGCTAAG-CCCGAAGG
24894618 TGTTTGAACG
Statistics
Matches: 86, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
78 53 0.62
79 33 0.38
ACGTcount: A:0.25, C:0.23, G:0.30, T:0.22
Consensus pattern (78 bp):
CCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATACCCGGGCTAAGCCCGAAGGCAATTGTG
CGAGTTACCATAA
Found at i:24894953 original size:26 final size:26
Alignment explanation
Indices: 24894917--24894968 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
24894907 ATGCTATACT
24894917 TTGGTTGTGTGTATATTATGGCTCGA
1 TTGGTTGTGTGTATATTATGGCTCGA
24894943 TTGGTTGTGTGTATATTATGGCTCGA
1 TTGGTTGTGTGTATATTATGGCTCGA
24894969 AACTTACTAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.15, C:0.08, G:0.31, T:0.46
Consensus pattern (26 bp):
TTGGTTGTGTGTATATTATGGCTCGA
Found at i:24898903 original size:40 final size:40
Alignment explanation
Indices: 24898829--24898974 Score: 175
Period size: 40 Copynumber: 3.6 Consensus size: 40
24898819 CCGCACCAAG
* * * * * *
24898829 GCCTACGGGACTTAACCCGGATATCACGATTTGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
* *
24898869 GCCTTCGGGTCTTAGCCCGGATTTAACAACTTGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
* * * *
24898909 GCCTTCGGGTCTTAGCCCGGATATAGCTACTAGCACAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
*
24898949 GCCTTCGGGTCTTAACCCGGATATAA
1 GCCTTCGGGTCTTAGCCCGGATATAA
24898975 TTTCCAGCAT
Statistics
Matches: 90, Mismatches: 16, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 90 1.00
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
Found at i:24898989 original size:40 final size:40
Alignment explanation
Indices: 24898861--24899011 Score: 171
Period size: 40 Copynumber: 3.8 Consensus size: 40
24898851 ATCACGATTT
* * * **
24898861 GCACAAATGCCTTCGGGTCTTAGCCCGGATTTAACAACTT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACTACCA
* *
24898901 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAGCTACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAACTACCA
* * *
24898941 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACTACCA
* *
24898981 GCATAATTGTCTTCGGG-CTTAGCCCGGATAT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
24899012 CATTCAATTT
Statistics
Matches: 97, Mismatches: 12, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
39 15 0.15
40 80 0.82
41 2 0.02
ACGTcount: A:0.23, C:0.26, G:0.22, T:0.28
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACTACCA
Found at i:24906836 original size:40 final size:40
Alignment explanation
Indices: 24906762--24906907 Score: 175
Period size: 40 Copynumber: 3.6 Consensus size: 40
24906752 CCGCACCAAG
* * * * * *
24906762 GCCTACGGGACTTAACCCGGATATCACGATTTGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
* *
24906802 GCCTTCGGGTCTTAGCCCGGATTTAACAACTTGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
* * * *
24906842 GCCTTCGGGTCTTAGCCCGGATATAGCTACTAGCACAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
*
24906882 GCCTTCGGGTCTTAACCCGGATATAA
1 GCCTTCGGGTCTTAGCCCGGATATAA
24906908 TTTCCAGCAT
Statistics
Matches: 90, Mismatches: 16, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 90 1.00
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
Found at i:24906922 original size:40 final size:40
Alignment explanation
Indices: 24906794--24906944 Score: 171
Period size: 40 Copynumber: 3.8 Consensus size: 40
24906784 ATCACGATTT
* * * **
24906794 GCACAAATGCCTTCGGGTCTTAGCCCGGATTTAACAACTT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACTACCA
* *
24906834 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAGCTACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAACTACCA
* * *
24906874 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACTACCA
* *
24906914 GCATAATTGTCTTCGGG-CTTAGCCCGGATAT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
24906945 CATTCAATTT
Statistics
Matches: 97, Mismatches: 12, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
39 15 0.15
40 80 0.82
41 2 0.02
ACGTcount: A:0.23, C:0.26, G:0.22, T:0.28
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACTACCA
Found at i:24913763 original size:39 final size:39
Alignment explanation
Indices: 24913709--24913851 Score: 225
Period size: 39 Copynumber: 3.7 Consensus size: 39
24913699 GAATGTTCGA
24913709 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
* * *
24913748 GTGATACCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
24913787 ATGATATCC-GGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
24913825 GTGATATCCGGGTTAAGTCCCGAAGGC
1 GTGATATCCGGGCTAAG-CCCGAAGGC
24913852 CTTTGTGCGG
Statistics
Matches: 93, Mismatches: 9, Indels: 3
0.89 0.09 0.03
Matches are distributed among these distances:
38 35 0.38
39 49 0.53
40 9 0.10
ACGTcount: A:0.27, C:0.22, G:0.29, T:0.22
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
Found at i:24913805 original size:77 final size:79
Alignment explanation
Indices: 24913710--24913891 Score: 260
Period size: 77 Copynumber: 2.3 Consensus size: 79
24913700 AATGTTCGAG
24913710 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATACCCGGGCTAAG-CCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATACCCGGGCTAAGTCCCGAAGGC
24913774 AATTGTGCGAGTTA
66 AATTGTGCGAGTTA
* *
24913788 TGATATCC-GGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGTTAAGTCCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATACCCGGGCTAAGTCCCGAAGGC
** *
24913852 CTTTGTGCGGGTTA
66 AATTGTGCGAGTTA
** * *
24913866 CCATAACCGGGCTATGTCCCGAAGGC
1 TGATATCCGGGCTAAG-CCCGAAGGC
24913892 GTTTGAACGA
Statistics
Matches: 92, Mismatches: 9, Indels: 4
0.88 0.09 0.04
Matches are distributed among these distances:
77 44 0.48
78 33 0.36
79 6 0.07
80 9 0.10
ACGTcount: A:0.25, C:0.23, G:0.29, T:0.23
Consensus pattern (79 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATACCCGGGCTAAGTCCCGAAGGC
AATTGTGCGAGTTA
Found at i:24930575 original size:24 final size:24
Alignment explanation
Indices: 24930543--24930654 Score: 113
Period size: 24 Copynumber: 4.7 Consensus size: 24
24930533 GGCTATCTCA
*
24930543 AATGCACTATGTGTGCAATTTATT
1 AATGCACTATGTGTGCAATTTACT
*
24930567 AATGCACTATGTGTGCGATTTACT
1 AATGCACTATGTGTGCAATTTACT
* *
24930591 -ATGGCACTATGTGTGCGATTTGCT
1 AAT-GCACTATGTGTGCAATTTACT
** *
24930615 -ATGGCACTATGTGTGCAAACATAAT
1 AAT-GCACTATGTGTGC-AATTTACT
24930640 AA-GCACTATGTGTGC
1 AATGCACTATGTGTGC
24930655 CACATTCGGT
Statistics
Matches: 77, Mismatches: 8, Indels: 6
0.85 0.09 0.07
Matches are distributed among these distances:
23 2 0.03
24 71 0.92
25 3 0.04
26 1 0.01
ACGTcount: A:0.27, C:0.16, G:0.22, T:0.35
Consensus pattern (24 bp):
AATGCACTATGTGTGCAATTTACT
Found at i:24934016 original size:21 final size:20
Alignment explanation
Indices: 24933970--24934017 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
24933960 TGTAACTTAA
*
24933970 TTAAGTAAATTAAGATTAAT
1 TTAAGTAAATTAAGAATAAT
* *
24933990 TAAAGTTAATTAAGTAATAAT
1 TTAAGTAAATTAAG-AATAAT
24934011 TTAAGTA
1 TTAAGTA
24934018 TAAAATTGAA
Statistics
Matches: 22, Mismatches: 5, Indels: 1
0.79 0.18 0.04
Matches are distributed among these distances:
20 12 0.55
21 10 0.45
ACGTcount: A:0.50, C:0.00, G:0.10, T:0.40
Consensus pattern (20 bp):
TTAAGTAAATTAAGAATAAT
Found at i:24936434 original size:42 final size:42
Alignment explanation
Indices: 24936387--24936539 Score: 191
Period size: 42 Copynumber: 3.6 Consensus size: 42
24936377 CTAAGACAGT
* *
24936387 GTGTAAGACCATGTCTGGGATATGGCATCAATATGAGACTAC
1 GTGTAAGACCATATCTGGGATATGGCATCGATATGAGACTAC
* *
24936429 GTGTAAGACCATATCTGGGACATGGCATCGATATGAGACTTC
1 GTGTAAGACCATATCTGGGATATGGCATCGATATGAGACTAC
* * * * *
24936471 GTGTAAGACCATAGCT-GAATTATTGGTATCGATACGAGATTAC
1 GTGTAAGACCATATCTGGGA-TA-TGGCATCGATATGAGACTAC
*
24936514 ATGTAAGACCATATCTGGGATATGGC
1 GTGTAAGACCATATCTGGGATATGGC
24936540 GTTGGTACGG
Statistics
Matches: 93, Mismatches: 15, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
41 2 0.02
42 57 0.61
43 32 0.34
44 2 0.02
ACGTcount: A:0.31, C:0.16, G:0.25, T:0.27
Consensus pattern (42 bp):
GTGTAAGACCATATCTGGGATATGGCATCGATATGAGACTAC
Found at i:24936985 original size:17 final size:18
Alignment explanation
Indices: 24936963--24936997 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
24936953 TTTAATAATG
24936963 AAAGAGAACA-AAAAAAA
1 AAAGAGAACAGAAAAAAA
*
24936980 AAAGAGAAGAGAAAAAAA
1 AAAGAGAACAGAAAAAAA
24936998 TGGTCTCATG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.80, C:0.03, G:0.17, T:0.00
Consensus pattern (18 bp):
AAAGAGAACAGAAAAAAA
Found at i:24938340 original size:27 final size:28
Alignment explanation
Indices: 24938284--24938353 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
24938274 AAACTTGAAC
24938284 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
24938312 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
24938339 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
24938354 GACTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:24938364 original size:27 final size:27
Alignment explanation
Indices: 24938284--24938365 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
24938274 AAACTTGAAC
* *
24938284 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
24938312 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
24938339 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
24938366 GCTTTTGAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
26 1 0.02
27 30 0.61
28 18 0.37
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:24944125 original size:12 final size:12
Alignment explanation
Indices: 24944108--24944132 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
24944098 TAAGGACAAA
24944108 AATATAATTTTT
1 AATATAATTTTT
24944120 AATATAATTTTT
1 AATATAATTTTT
24944132 A
1 A
24944133 CCATAATGTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (12 bp):
AATATAATTTTT
Found at i:24944499 original size:42 final size:42
Alignment explanation
Indices: 24944452--24944615 Score: 202
Period size: 42 Copynumber: 3.9 Consensus size: 42
24944442 TTAAGGCTAC
*
24944452 TGAGACTATATGTAAGACCATATCTGGGATATGGCATCGATA
1 TGAGACTACATGTAAGACCATATCTGGGATATGGCATCGATA
* *
24944494 TGAGACTACGTATAAGACCATATCTGGGATATGGCATCGATA
1 TGAGACTACATGTAAGACCATATCTGGGATATGGCATCGATA
* * * * * ***
24944536 TGAGACTTCGTGTAAGACCATAGCTAGGCTATTAAAATCGATA
1 TGAGACTACATGTAAGACCATATCTGGGATA-TGGCATCGATA
* *
24944579 CGAGATTACATGTAAGACCATATCTGGGATATGGCAT
1 TGAGACTACATGTAAGACCATATCTGGGATATGGCAT
24944616 TCGTACGGTA
Statistics
Matches: 100, Mismatches: 21, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
42 68 0.68
43 32 0.32
ACGTcount: A:0.34, C:0.16, G:0.23, T:0.27
Consensus pattern (42 bp):
TGAGACTACATGTAAGACCATATCTGGGATATGGCATCGATA
Found at i:24949808 original size:52 final size:52
Alignment explanation
Indices: 24949725--24949829 Score: 185
Period size: 52 Copynumber: 2.0 Consensus size: 52
24949715 AATGACCCAC
*
24949725 TCACGTATCTAGAACCTATTTATGGATTTATTCCC-TCATGACATTCATAGTG
1 TCACATATCTAGAACCTATTTATGGATTTATTCCCAT-ATGACATTCATAGTG
24949777 TCACATATCTAGAACCTATTTATGGATTTATTCCCATATGACATTCATAGTG
1 TCACATATCTAGAACCTATTTATGGATTTATTCCCATATGACATTCATAGTG
24949829 T
1 T
24949830 GGCATACCTA
Statistics
Matches: 51, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
52 50 0.98
53 1 0.02
ACGTcount: A:0.29, C:0.20, G:0.12, T:0.39
Consensus pattern (52 bp):
TCACATATCTAGAACCTATTTATGGATTTATTCCCATATGACATTCATAGTG
Found at i:24950368 original size:56 final size:57
Alignment explanation
Indices: 24950292--24950401 Score: 161
Period size: 56 Copynumber: 1.9 Consensus size: 57
24950282 AAATTAATAC
*
24950292 AAATGCGAAACATTTTGAAATAATTATGG-TTTCTCCAAAATGAAAATGAAAATGGAG
1 AAATGCGAAACATTTGGAAATAA-TATGGTTTTCTCCAAAATGAAAATGAAAATGGAG
* * *
24950349 AAATG-GAATCATTTGGAAATAATGTGGTTTTCTCCAAAGTGAAAATGAAAATG
1 AAATGCGAAACATTTGGAAATAATATGGTTTTCTCCAAAATGAAAATGAAAATG
24950402 AAAAATGAAA
Statistics
Matches: 48, Mismatches: 4, Indels: 3
0.87 0.07 0.05
Matches are distributed among these distances:
55 4 0.08
56 39 0.81
57 5 0.10
ACGTcount: A:0.44, C:0.08, G:0.19, T:0.29
Consensus pattern (57 bp):
AAATGCGAAACATTTGGAAATAATATGGTTTTCTCCAAAATGAAAATGAAAATGGAG
Found at i:24950408 original size:7 final size:7
Alignment explanation
Indices: 24950390--24950418 Score: 51
Period size: 7 Copynumber: 4.3 Consensus size: 7
24950380 CTCCAAAGTG
24950390 AAAATG-
1 AAAATGA
24950396 AAAATGA
1 AAAATGA
24950403 AAAATGA
1 AAAATGA
24950410 AAAATGA
1 AAAATGA
24950417 AA
1 AA
24950419 TGACCTAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 6 0.27
7 16 0.73
ACGTcount: A:0.72, C:0.00, G:0.14, T:0.14
Consensus pattern (7 bp):
AAAATGA
Found at i:24953949 original size:38 final size:38
Alignment explanation
Indices: 24953898--24953975 Score: 156
Period size: 38 Copynumber: 2.1 Consensus size: 38
24953888 GCATGGTGAA
24953898 AATTTATATTTATTTGTGTCTTGAAAGTTCACAATACC
1 AATTTATATTTATTTGTGTCTTGAAAGTTCACAATACC
24953936 AATTTATATTTATTTGTGTCTTGAAAGTTCACAATACC
1 AATTTATATTTATTTGTGTCTTGAAAGTTCACAATACC
24953974 AA
1 AA
24953976 CACCTCCACC
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 40 1.00
ACGTcount: A:0.33, C:0.13, G:0.10, T:0.44
Consensus pattern (38 bp):
AATTTATATTTATTTGTGTCTTGAAAGTTCACAATACC
Found at i:24956149 original size:20 final size:20
Alignment explanation
Indices: 24956126--24956166 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
24956116 ATTTAGATAC
24956126 TTTATTTTATTTTTAATCAA
1 TTTATTTTATTTTTAATCAA
24956146 TTTATTTTATTTTTAATCAA
1 TTTATTTTATTTTTAATCAA
24956166 T
1 T
24956167 CCTTTGAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.29, C:0.05, G:0.00, T:0.66
Consensus pattern (20 bp):
TTTATTTTATTTTTAATCAA
Found at i:24961277 original size:33 final size:33
Alignment explanation
Indices: 24961226--24961291 Score: 89
Period size: 33 Copynumber: 2.0 Consensus size: 33
24961216 AATCATAATC
* * *
24961226 ATAATTAATTAATGATTAGATTACATCTAATAA
1 ATAATTAAATAATGATTAGAGTACATATAATAA
24961259 ATAA-TAAATAATGTATTAGAGTACATATAATAA
1 ATAATTAAATAATG-ATTAGAGTACATATAATAA
24961292 TTATAATTTT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
32 8 0.28
33 21 0.72
ACGTcount: A:0.52, C:0.05, G:0.08, T:0.36
Consensus pattern (33 bp):
ATAATTAAATAATGATTAGAGTACATATAATAA
Found at i:24967372 original size:40 final size:40
Alignment explanation
Indices: 24967328--24967493 Score: 224
Period size: 40 Copynumber: 4.1 Consensus size: 40
24967318 TGACAAATTA
* * *
24967328 GCTATATGTGGCACTTAGTGTGCGATTTGACATGGCTTCG
1 GCTATATATGGCACTTAGTGTGCGATTCGACATAGCTTCG
* * *
24967368 GCTATATATGGCACTTAGTGAGCGATTCAACATAGCTTCA
1 GCTATATATGGCACTTAGTGTGCGATTCGACATAGCTTCG
*
24967408 GCTATATATGGCACTTAGTGTGCGATATCGAGATAGCTTCG
1 GCTATATATGGCACTTAGTGTGCGAT-TCGACATAGCTTCG
* * * *
24967449 ACTATATATGGCACTTAGTGTGCGATTTGAGATAGCTTCT
1 GCTATATATGGCACTTAGTGTGCGATTCGACATAGCTTCG
24967489 GCTAT
1 GCTAT
24967494 GAACGACACT
Statistics
Matches: 111, Mismatches: 14, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
40 75 0.68
41 36 0.32
ACGTcount: A:0.24, C:0.17, G:0.25, T:0.34
Consensus pattern (40 bp):
GCTATATATGGCACTTAGTGTGCGATTCGACATAGCTTCG
Found at i:24967474 original size:81 final size:80
Alignment explanation
Indices: 24967327--24967493 Score: 235
Period size: 81 Copynumber: 2.1 Consensus size: 80
24967317 ATGACAAATT
* * * *
24967327 AGCTATATGTGGCACTTAGTGTGCGATTTGACATGGCTTCGGCTATATATGGCACTTAGTGAGCG
1 AGCTATATATGGCACTTAGTGTGCGATTCGACATAGCTTCGACTATATATGGCACTTAGTGAGCG
24967392 ATTCAACATAGCTTC
66 ATTCAACATAGCTTC
* *
24967407 AGCTATATATGGCACTTAGTGTGCGATATCGAGATAGCTTCGACTATATATGGCACTTAGTGTGC
1 AGCTATATATGGCACTTAGTGTGCGAT-TCGACATAGCTTCGACTATATATGGCACTTAGTGAGC
** *
24967472 GATTTGAGATAGCTTC
65 GATTCAACATAGCTTC
*
24967488 TGCTAT
1 AGCTAT
24967494 GAACGACACT
Statistics
Matches: 76, Mismatches: 10, Indels: 1
0.87 0.11 0.01
Matches are distributed among these distances:
80 26 0.34
81 50 0.66
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.34
Consensus pattern (80 bp):
AGCTATATATGGCACTTAGTGTGCGATTCGACATAGCTTCGACTATATATGGCACTTAGTGAGCG
ATTCAACATAGCTTC
Found at i:24971113 original size:93 final size:93
Alignment explanation
Indices: 24971001--24971172 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
24970991 CGCCCATAAG
* *
24971001 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
24971066 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
24971094 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
24971159 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
24971173 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:24971169 original size:46 final size:46
Alignment explanation
Indices: 24970994--24971169 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
24970984 TGTAACCCGC
* * *
24970994 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
24971040 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
24971090 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
24971133 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
24971170 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:24975085 original size:46 final size:46
Alignment explanation
Indices: 24975029--24975204 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
24975019 TGGTTGAGCA
24975029 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
24975075 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
24975120 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
24975168 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
24975205 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:24975185 original size:93 final size:93
Alignment explanation
Indices: 24975026--24975197 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
24975016 GGATGGTTGA
* *
24975026 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
24975091 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
24975119 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
24975184 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
24975198 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:24979209 original size:48 final size:48
Alignment explanation
Indices: 24979148--24979402 Score: 402
Period size: 48 Copynumber: 5.3 Consensus size: 48
24979138 ATGTCATTCT
*
24979148 CAGACATGGTCTTACACTGGCACACATATCAACGCCGATGCCACGTCC
1 CAGACATGGTCTTACACTGGCTCACATATCAACGCCGATGCCACGTCC
* * * *
24979196 CAGACATGGTCTTACACTAGCTCACATATTAACACCGATGCCATGTCC
1 CAGACATGGTCTTACACTGGCTCACATATCAACGCCGATGCCACGTCC
* *
24979244 CAGACATGGTCTTACATTGGCTCACATATCAACACCGATGCCACGTCC
1 CAGACATGGTCTTACACTGGCTCACATATCAACGCCGATGCCACGTCC
* * *
24979292 CAGACATCGTCTTACATTGGCTCACATATCAACGACGATGCCACGTCC
1 CAGACATGGTCTTACACTGGCTCACATATCAACGCCGATGCCACGTCC
*
24979340 CAGACATGGTCTTACACTGGCTCACATATCAACGCCGATGCCATGTCC
1 CAGACATGGTCTTACACTGGCTCACATATCAACGCCGATGCCACGTCC
*
24979388 TAGACATGGTCTTAC
1 CAGACATGGTCTTAC
24979403 TAGGATCTCA
Statistics
Matches: 190, Mismatches: 17, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
48 190 1.00
ACGTcount: A:0.27, C:0.33, G:0.17, T:0.23
Consensus pattern (48 bp):
CAGACATGGTCTTACACTGGCTCACATATCAACGCCGATGCCACGTCC
Found at i:24979699 original size:48 final size:48
Alignment explanation
Indices: 24979601--24979704 Score: 145
Period size: 48 Copynumber: 2.2 Consensus size: 48
24979591 TACTTACACA
* * *
24979601 CATATCGATGCCAATGCCATGTCCCATACATGGTCTTACATGGGATCT
1 CATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACACGGGACCT
* * *
24979649 CATATCGGTGCCGATGCCATGTCCCAGACATGGTCTTATACGGGACCT
1 CATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACACGGGACCT
*
24979697 CATCTCGA
1 CATATCGA
24979705 AATTTTGTCG
Statistics
Matches: 48, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
48 48 1.00
ACGTcount: A:0.23, C:0.29, G:0.21, T:0.27
Consensus pattern (48 bp):
CATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACACGGGACCT
Found at i:24983894 original size:21 final size:21
Alignment explanation
Indices: 24983868--24983908 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
24983858 CGCATACGCC
*
24983868 AACAGAAGCTTATAAGAGCTG
1 AACAGAAGCTCATAAGAGCTG
*
24983889 AACAGAAGCTCGTAAGAGCT
1 AACAGAAGCTCATAAGAGCT
24983909 TATCCACCCG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.41, C:0.17, G:0.24, T:0.17
Consensus pattern (21 bp):
AACAGAAGCTCATAAGAGCTG
Found at i:24987670 original size:40 final size:40
Alignment explanation
Indices: 24987562--24987771 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
24987552 CGGGATTTAA
* * * * *
24987562 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
24987602 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
24987642 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
24987682 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
24987722 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
24987762 CCGGATATAT
1 CCGGATATAT
24987772 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:24995804 original size:40 final size:40
Alignment explanation
Indices: 24995696--24995905 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
24995686 CGGGATTTAA
* * * * *
24995696 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
24995736 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
24995776 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
24995816 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
24995856 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
24995896 CCGGATATAT
1 CCGGATATAT
24995906 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:24998623 original size:80 final size:80
Alignment explanation
Indices: 24998498--24998690 Score: 244
Period size: 80 Copynumber: 2.4 Consensus size: 80
24998488 GGATATAGCG
* * *
24998498 ACTCGCTCAAAAGCCTTCGGGACA-TAGCCCGGTTATAATAGCTCGCATAAATGCCTTCAGGACT
1 ACTCGCACAAAAGCCTTCGGGA-ATTAGCCCGGTTATAATAACTCGCACAAATGCCTTCAGGACT
24998562 TAACCCGGATTTGGGA
65 TAACCCGGATTTGGGA
* * * ** *
24998578 ACTCGCACAAATGCCTTCGGGAATTAACCCGGTTTTGGTAACTCGCACAAATGCCTTCGGGACTT
1 ACTCGCACAAAAGCCTTCGGGAATTAGCCCGGTTATAATAACTCGCACAAATGCCTTCAGGACTT
**
24998643 AACCCGGATTTGGTC
66 AACCCGGATTTGGGA
* *
24998658 ACTTAGCACAAAAGCCTTCGGGACTTAGCCCGG
1 AC-TCGCACAAAAGCCTTCGGGAATTAGCCCGG
24998691 ATACCATTCA
Statistics
Matches: 96, Mismatches: 15, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
79 1 0.01
80 69 0.72
81 26 0.27
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (80 bp):
ACTCGCACAAAAGCCTTCGGGAATTAGCCCGGTTATAATAACTCGCACAAATGCCTTCAGGACTT
AACCCGGATTTGGGA
Found at i:24998679 original size:41 final size:40
Alignment explanation
Indices: 24998498--24998692 Score: 221
Period size: 40 Copynumber: 4.8 Consensus size: 40
24998488 GGATATAGCG
* * * * **
24998498 ACTCGCTCAAAAGCCTTCGGGACATAGCCCGG-TTATAATA
1 ACTCGCACAAATGCCTTCGGGACTTAACCCGGATT-TGGTA
* * * *
24998538 GCTCGCATAAATGCCTTCAGGACTTAACCCGGATTTGGGA
1 ACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTGGTA
* *
24998578 ACTCGCACAAATGCCTTCGGGAATTAACCCGGTTTTGGTA
1 ACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTGGTA
*
24998618 ACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTGGTC
1 ACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTGGTA
* * *
24998658 ACTTAGCACAAAAGCCTTCGGGACTTAGCCCGGAT
1 AC-TCGCACAAATGCCTTCGGGACTTAACCCGGAT
24998693 ACCATTCAAA
Statistics
Matches: 131, Mismatches: 22, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
40 100 0.76
41 31 0.24
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTGGTA
Found at i:25003612 original size:30 final size:29
Alignment explanation
Indices: 25003566--25003624 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 29
25003556 TTCCCGAGCC
*
25003566 TAGGGGAAAAGTGTAATTATGCAAAAGTT
1 TAGGGGAAAAATGTAATTATGCAAAAGTT
* *
25003595 TAGGGGCAAAAATGTAATTTTGCCAAAGTT
1 TAGGGG-AAAAATGTAATTATGCAAAAGTT
25003625 CGTATTAAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
29 6 0.23
30 20 0.77
ACGTcount: A:0.39, C:0.07, G:0.25, T:0.29
Consensus pattern (29 bp):
TAGGGGAAAAATGTAATTATGCAAAAGTT
Found at i:25011146 original size:30 final size:30
Alignment explanation
Indices: 25011091--25011147 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 30
25011081 CCGAGCCTAG
* *
25011091 GGGCAAAAGTGTAATTATGCAAAAGTTTAA
1 GGGCAAAAATGTAATTATACAAAAGTTTAA
* *
25011121 GGGCAAAAATGTAATTTTACTAAAGTT
1 GGGCAAAAATGTAATTATACAAAAGTT
25011148 CATATTAAAT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.42, C:0.07, G:0.21, T:0.30
Consensus pattern (30 bp):
GGGCAAAAATGTAATTATACAAAAGTTTAA
Found at i:25017891 original size:38 final size:38
Alignment explanation
Indices: 25017822--25018011 Score: 245
Period size: 38 Copynumber: 4.9 Consensus size: 38
25017812 ATTTCATGTG
* * *
25017822 TATCCGGGCTTAAAGACCCGCAGCCTATGTGCTGGTATTA
1 TATCCGGG-TTAAA-TCCCGCAGGCTTTGTGCTGGTATTA
*
25017862 TATCCGGGTTAAATCCCGCAGGCTTTGTGCTGGTAATA
1 TATCCGGGTTAAATCCCGCAGGCTTTGTGCTGGTATTA
*
25017900 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTA
1 TATCCGGGTTAAATCCCGCAGGCTTTGTGCTGGTATTA
* * *
25017938 TATCCAGGTTAAATCCCACAGGCTTAGTGCTGGTATTA
1 TATCCGGGTTAAATCCCGCAGGCTTTGTGCTGGTATTA
* * *
25017976 TATTCGAGCTTAAAGTCCCGCAGGTTTTGTGCTGGT
1 TATCCG-GGTTAAA-TCCCGCAGGCTTTGTGCTGGT
25018012 GACTGGATTC
Statistics
Matches: 133, Mismatches: 15, Indels: 4
0.88 0.10 0.03
Matches are distributed among these distances:
38 96 0.72
39 11 0.08
40 26 0.20
ACGTcount: A:0.21, C:0.22, G:0.25, T:0.32
Consensus pattern (38 bp):
TATCCGGGTTAAATCCCGCAGGCTTTGTGCTGGTATTA
Found at i:25019173 original size:48 final size:48
Alignment explanation
Indices: 25019117--25019390 Score: 277
Period size: 48 Copynumber: 5.7 Consensus size: 48
25019107 GTGAGCCAGC
* *
25019117 GTAAGACCATGTTTGGAACATGGCATCGGCATTTATATGAGAGCTAGT
1 GTAAGACCATGTCTGGAACATGGCATCGGCATATATATGAGAGCTAGT
* * * *
25019165 GTAAGACCACGTCTGGGACATGGCATCGGCCTCGACATAT-A-AGCTAGT
1 GTAAGACCATGTCTGGAACATGGCATCGGCAT--ATATATGAGAGCTAGT
* ** *
25019213 GTAAGACCATGTTTGGAACATGGCATCAACATTTATATGAGAGCTAGT
1 GTAAGACCATGTCTGGAACATGGCATCGGCATATATATGAGAGCTAGT
* * * *
25019261 GTAAAACCATGTCTGGGACATGGCATCGGCCTCGAGATAT--GAGCTAGT
1 GTAAGACCATGTCTGGAACATGGCATCGGCAT--ATATATGAGAGCTAGT
* * * *
25019309 GTAAGACCATGTTTGGAACATGGCTTCGGCACCGATATATGAGAGCCAGT
1 GTAAGACCATGTCTGGAACATGGCATCGGCA--TATATATGAGAGCTAGT
* * *
25019359 GTAAGACCATGTCTGGGACACGGTATCGGCAT
1 GTAAGACCATGTCTGGAACATGGCATCGGCAT
25019391 CTTACCCTTT
Statistics
Matches: 180, Mismatches: 36, Indels: 20
0.76 0.15 0.08
Matches are distributed among these distances:
46 4 0.02
47 1 0.01
48 133 0.74
49 1 0.01
50 41 0.23
ACGTcount: A:0.28, C:0.19, G:0.27, T:0.25
Consensus pattern (48 bp):
GTAAGACCATGTCTGGAACATGGCATCGGCATATATATGAGAGCTAGT
Found at i:25019281 original size:96 final size:96
Alignment explanation
Indices: 25019117--25019388 Score: 400
Period size: 96 Copynumber: 2.8 Consensus size: 96
25019107 GTGAGCCAGC
** *
25019117 GTAAGACCATGTTTGGAACATGGCATCGGCATTTATATGAGAGCTAGTGTAAGACCACGTCTGGG
1 GTAAGACCATGTTTGGAACATGGCATCAACATTTATATGAGAGCTAGTGTAAGACCATGTCTGGG
25019182 ACATGGCATCGGCCTCGACATATAAGCTAGT
66 ACATGGCATCGGCCTCGACATATAAGCTAGT
*
25019213 GTAAGACCATGTTTGGAACATGGCATCAACATTTATATGAGAGCTAGTGTAAAACCATGTCTGGG
1 GTAAGACCATGTTTGGAACATGGCATCAACATTTATATGAGAGCTAGTGTAAGACCATGTCTGGG
* *
25019278 ACATGGCATCGGCCTCGAGATATGAGCTAGT
66 ACATGGCATCGGCCTCGACATATAAGCTAGT
* * *** *
25019309 GTAAGACCATGTTTGGAACATGGCTTCGGCACCGATATATGAGAGCCAGTGTAAGACCATGTCTG
1 GTAAGACCATGTTTGGAACATGGCATC--AACATTTATATGAGAGCTAGTGTAAGACCATGTCTG
* *
25019374 GGACACGGTATCGGC
64 GGACATGGCATCGGC
25019389 ATCTTACCCT
Statistics
Matches: 159, Mismatches: 15, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
96 116 0.73
98 43 0.27
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.25
Consensus pattern (96 bp):
GTAAGACCATGTTTGGAACATGGCATCAACATTTATATGAGAGCTAGTGTAAGACCATGTCTGGG
ACATGGCATCGGCCTCGACATATAAGCTAGT
Found at i:25027583 original size:21 final size:21
Alignment explanation
Indices: 25027532--25027583 Score: 68
Period size: 21 Copynumber: 2.5 Consensus size: 21
25027522 TACTTATTTA
* ** *
25027532 GATCAAGATAAACCTTGTATG
1 GATCAAGATCAACCTCATACG
25027553 GATCAAGATCAACCTCATACG
1 GATCAAGATCAACCTCATACG
25027574 GATCAAGATC
1 GATCAAGATC
25027584 GAGAAAAAGC
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.38, C:0.21, G:0.17, T:0.23
Consensus pattern (21 bp):
GATCAAGATCAACCTCATACG
Done.