Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr02 99090824
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 99090824
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 317 characters in sequence are not A, C, G, or T
File 84 of 318
Found at i:25038045 original size:20 final size:20
Alignment explanation
Indices: 25038007--25038044 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
25037997 CTTCAAAGTA
25038007 AAAATGAATCTCAAATTTTG
1 AAAATGAATCTCAAATTTTG
*
25038027 AAAATGTATCTC-AATTTT
1 AAAATGAATCTCAAATTTT
25038045 TTATTTAGGC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 6 0.35
20 11 0.65
ACGTcount: A:0.42, C:0.11, G:0.08, T:0.39
Consensus pattern (20 bp):
AAAATGAATCTCAAATTTTG
Found at i:25038840 original size:94 final size:94
Alignment explanation
Indices: 25038674--25038865 Score: 375
Period size: 94 Copynumber: 2.0 Consensus size: 94
25038664 TCCAACAACC
*
25038674 ACAATGGTTGGAATTTAATTTAGGGGTATAAATACCAGCTTCCAAATATCCTACAATAACAAAAA
1 ACAAAGGTTGGAATTTAATTTAGGGGTATAAATACCAGCTTCCAAATATCCTACAATAACAAAAA
25038739 AGCATACTCAAGCAAAAATCATCAATCAA
66 AGCATACTCAAGCAAAAATCATCAATCAA
25038768 ACAAAGGTTGGAATTTAATTTAGGGGTATAAATACCAGCTTCCAAATATCCTACAATAACAAAAA
1 ACAAAGGTTGGAATTTAATTTAGGGGTATAAATACCAGCTTCCAAATATCCTACAATAACAAAAA
25038833 AGCATACTCAAGCAAAAATCATCAATCAA
66 AGCATACTCAAGCAAAAATCATCAATCAA
25038862 ACAA
1 ACAA
25038866 CATTTGTGCC
Statistics
Matches: 97, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
94 97 1.00
ACGTcount: A:0.47, C:0.18, G:0.11, T:0.23
Consensus pattern (94 bp):
ACAAAGGTTGGAATTTAATTTAGGGGTATAAATACCAGCTTCCAAATATCCTACAATAACAAAAA
AGCATACTCAAGCAAAAATCATCAATCAA
Found at i:25040193 original size:16 final size:17
Alignment explanation
Indices: 25040167--25040198 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
25040157 TTAAATTAAC
25040167 TAAATTAATTTCTCAAT
1 TAAATTAATTTCTCAAT
25040184 TAAA-TAATTTCTCAA
1 TAAATTAATTTCTCAA
25040199 CCCACTTCTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.44, C:0.12, G:0.00, T:0.44
Consensus pattern (17 bp):
TAAATTAATTTCTCAAT
Found at i:25045743 original size:23 final size:23
Alignment explanation
Indices: 25045696--25045797 Score: 111
Period size: 23 Copynumber: 4.3 Consensus size: 23
25045686 TAGCTTGTAG
*
25045696 GAGCTTACTG-TTCAACTCGAA-A
1 GAGCTTACTGTTTCAGCTC-AATA
25045718 GAGCTTACTGTTTCAGCTCAATA
1 GAGCTTACTGTTTCAGCTCAATA
25045741 GAGCTTA-TCGTTTCAGCTCAATA
1 GAGCTTACT-GTTTCAGCTCAATA
* *
25045764 GAGCTTACTATTCATCAGCTCAAGA
1 GAGCTTACTGTT--TCAGCTCAATA
25045789 GGAGCTTAC
1 -GAGCTTAC
25045798 CGATCATGGC
Statistics
Matches: 70, Mismatches: 3, Indels: 10
0.84 0.04 0.12
Matches are distributed among these distances:
22 13 0.19
23 38 0.54
24 1 0.01
25 10 0.14
26 8 0.11
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (23 bp):
GAGCTTACTGTTTCAGCTCAATA
Found at i:25065553 original size:46 final size:46
Alignment explanation
Indices: 25065503--25065678 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
25065493 TGGTTGAGCA
25065503 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
25065549 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
25065594 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
25065642 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
25065679 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:25065659 original size:93 final size:93
Alignment explanation
Indices: 25065500--25065671 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
25065490 GGATGGTTGA
* *
25065500 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
25065565 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
25065593 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
25065658 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
25065672 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:25071501 original size:217 final size:217
Alignment explanation
Indices: 25071126--25071567 Score: 875
Period size: 217 Copynumber: 2.0 Consensus size: 217
25071116 GAACTTTAAC
25071126 AATTTCAATTTGATTTAATACCGATCGCATGAAATCAACAACTCAATATTATTTATATAATTCAA
1 AATTTCAATTTGATTTAATACCGATCGCATGAAATCAACAACTCAATATTATTTATATAATTCAA
25071191 TCAACATTTCAATTTATAAATACTAGTATTAGTATCAATAGTACCACCTAAACCAATGTATACAT
66 TCAACATTTCAATTTATAAATACTAGTATTAGTATCAATAGTACCACCTAAACCAATGTATACAT
25071256 GATTCAATTAATCAATCTAAAGAATATACCATATTAACGTTTTAGTATCATTGACGTTATAATTC
131 GATTCAATTAATCAATCTAAAGAATATACCATATTAACGTTTTAGTATCATTGACGTTATAATTC
25071321 TATTCGTTTCATATTATACGGT
196 TATTCGTTTCATATTATACGGT
25071343 AATTTCAATTTGATTTAATACCGATCGCATGAAATCAACAACTCAATATTATTTATATAATTCAA
1 AATTTCAATTTGATTTAATACCGATCGCATGAAATCAACAACTCAATATTATTTATATAATTCAA
25071408 TCAACATTTCAATTTATAAATACTAGTATTAGTATCAATAGTACCACCTAAACCAATGTATACAT
66 TCAACATTTCAATTTATAAATACTAGTATTAGTATCAATAGTACCACCTAAACCAATGTATACAT
25071473 GATTCAATTAATCAATCTAAAGAATATACCATATTAACGTTTTAGTATCATTGACGTTATAATTC
131 GATTCAATTAATCAATCTAAAGAATATACCATATTAACGTTTTAGTATCATTGACGTTATAATTC
25071538 TATTCGTTTCATATTATACGGT
196 TATTCGTTTCATATTATACGGT
*
25071560 AATATCAA
1 AATTTCAA
25071568 CATGTCATTT
Statistics
Matches: 224, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
217 224 1.00
ACGTcount: A:0.39, C:0.16, G:0.08, T:0.38
Consensus pattern (217 bp):
AATTTCAATTTGATTTAATACCGATCGCATGAAATCAACAACTCAATATTATTTATATAATTCAA
TCAACATTTCAATTTATAAATACTAGTATTAGTATCAATAGTACCACCTAAACCAATGTATACAT
GATTCAATTAATCAATCTAAAGAATATACCATATTAACGTTTTAGTATCATTGACGTTATAATTC
TATTCGTTTCATATTATACGGT
Found at i:25074507 original size:11 final size:11
Alignment explanation
Indices: 25074491--25074519 Score: 51
Period size: 10 Copynumber: 2.7 Consensus size: 11
25074481 GAATAGAGAT
25074491 AAAAGAAAAAA
1 AAAAGAAAAAA
25074502 AAAAG-AAAAA
1 AAAAGAAAAAA
25074512 AAAAGAAA
1 AAAAGAAA
25074520 GCATTAACAG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
10 10 0.59
11 7 0.41
ACGTcount: A:0.90, C:0.00, G:0.10, T:0.00
Consensus pattern (11 bp):
AAAAGAAAAAA
Found at i:25078791 original size:35 final size:35
Alignment explanation
Indices: 25078751--25078821 Score: 133
Period size: 35 Copynumber: 2.0 Consensus size: 35
25078741 AGAAGTACAA
25078751 TTACAATAAGCCTATGTCTAGTGTCGTAGAGTACC
1 TTACAATAAGCCTATGTCTAGTGTCGTAGAGTACC
*
25078786 TTACAATAGGCCTATGTCTAGTGTCGTAGAGTACC
1 TTACAATAAGCCTATGTCTAGTGTCGTAGAGTACC
25078821 T
1 T
25078822 ATCCATGCAT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.27, C:0.20, G:0.21, T:0.32
Consensus pattern (35 bp):
TTACAATAAGCCTATGTCTAGTGTCGTAGAGTACC
Found at i:25083943 original size:206 final size:206
Alignment explanation
Indices: 25083580--25084135 Score: 916
Period size: 206 Copynumber: 2.7 Consensus size: 206
25083570 GTAGATCTGG
*
25083580 CTGAAGCAAGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCT
1 CTGAAGC-AGATCCAAGATGATTTGGCATCCTTGTGTTTACAAGGAACAAATCGAAGACATAGCT
* * * *
25083645 GATTTGGCTTTCATGTGCTTATGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTTAG
65 GATTTGGCTTTCACGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAG
* * * *
25083710 AGAGCATATCGAAGTTTGGCGTCTCCATATTTGACAGAGGGCAGACACATAGCAGATCTAACCTT
130 AGAACAAATCGAAGTTTGGCATCTCCATATTCGACAGAGGGCAGACACATAGCAGATCTAACCTT
25083775 CAGATGATTAGA
195 CAGATGATTAGA
*
25083787 CTGAAGCAGATCCAAGATGATTTGGCATCCTTTTGTTTACAAGGAACAAATCGAA-ATCATAGCT
1 CTGAAGCAGATCCAAGATGATTTGGCATCCTTGTGTTTACAAGGAACAAATCGAAGA-CATAGCT
* * *
25083851 GATTTAGCTTTCACGTGCTTACGCTGAAGCAAGTCTAAGATGATTTGGCATCTCTATATTGTCAG
65 GATTTGGCTTTCACGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAG
*
25083916 AGAACAAATCGAAGTTTGGCATCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTAACCTT
130 AGAACAAATCGAAGTTTGGCATCTCCATATTCGACAGAGGGCAGACACATAGCAGATCTAACCTT
25083981 CAGATGATTAGA
195 CAGATGATTAGA
* * *
25083993 CTGAAGCAGATCCAAGATGGTTTGGTATCCTTGTGTTTACAAGGAGCAAATCGAAGACATAGCTG
1 CTGAAGCAGATCCAAGATGATTTGGCATCCTTGTGTTTACAAGGAACAAATCGAAGACATAGCTG
* *
25084058 ATTTGGTTTTCGCGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGA
66 ATTTGGCTTTCACGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGA
25084123 GAACAAATCGAAG
131 GAACAAATCGAAG
25084136 AAGCAGATTT
Statistics
Matches: 324, Mismatches: 23, Indels: 5
0.92 0.07 0.01
Matches are distributed among these distances:
205 1 0.00
206 315 0.97
207 8 0.02
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.29
Consensus pattern (206 bp):
CTGAAGCAGATCCAAGATGATTTGGCATCCTTGTGTTTACAAGGAACAAATCGAAGACATAGCTG
ATTTGGCTTTCACGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGA
GAACAAATCGAAGTTTGGCATCTCCATATTCGACAGAGGGCAGACACATAGCAGATCTAACCTTC
AGATGATTAGA
Found at i:25085788 original size:16 final size:16
Alignment explanation
Indices: 25085758--25085790 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
25085748 TATATTACTA
25085758 TTATTATCCATTATTT
1 TTATTATCCATTATTT
25085774 TTATTAT-CATATATTT
1 TTATTATCCAT-TATTT
25085790 T
1 T
25085791 ATCTATAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 3 0.19
16 13 0.81
ACGTcount: A:0.27, C:0.09, G:0.00, T:0.64
Consensus pattern (16 bp):
TTATTATCCATTATTT
Found at i:25085841 original size:12 final size:12
Alignment explanation
Indices: 25085801--25085844 Score: 61
Period size: 12 Copynumber: 3.5 Consensus size: 12
25085791 ATCTATAAAT
25085801 TATATTATATTA
1 TATATTATATTA
*
25085813 TATATTTTATTTTA
1 TATA--TTATATTA
25085827 TATATTATATTA
1 TATATTATATTA
25085839 TATATT
1 TATATT
25085845 TTTATAAAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
12 17 0.61
14 11 0.39
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (12 bp):
TATATTATATTA
Found at i:25085868 original size:20 final size:20
Alignment explanation
Indices: 25085841--25085879 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
25085831 TTATATTATA
25085841 TATTTTTA-TAAAATTGTAT
1 TATTTTTACTAAAATTGTAT
*
25085860 TATTATTTACTAAATTTGTA
1 TATT-TTTACTAAAATTGTA
25085880 AATGGCAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 4 0.24
20 4 0.24
21 9 0.53
ACGTcount: A:0.36, C:0.03, G:0.05, T:0.56
Consensus pattern (20 bp):
TATTTTTACTAAAATTGTAT
Found at i:25086221 original size:18 final size:18
Alignment explanation
Indices: 25086195--25086235 Score: 73
Period size: 18 Copynumber: 2.3 Consensus size: 18
25086185 TACCATATTA
*
25086195 TATTTCATACTATATTTT
1 TATTACATACTATATTTT
25086213 TATTACATACTATATTTT
1 TATTACATACTATATTTT
25086231 TATTA
1 TATTA
25086236 TTCAATATTC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.32, C:0.10, G:0.00, T:0.59
Consensus pattern (18 bp):
TATTACATACTATATTTT
Found at i:25086354 original size:10 final size:10
Alignment explanation
Indices: 25086339--25086396 Score: 55
Period size: 10 Copynumber: 5.7 Consensus size: 10
25086329 TGCAAAATAC
*
25086339 TTATTATTTT
1 TTATTATATT
25086349 TTATTAT-TT
1 TTATTATATT
25086358 TATATTATATT
1 T-TATTATATT
**
25086369 TCCTTATATT
1 TTATTATATT
25086379 TTATTCATATT
1 TTATT-ATATT
*
25086390 ATATTAT
1 TTATTAT
25086397 TATACATAAC
Statistics
Matches: 40, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
9 3 0.08
10 25 0.62
11 12 0.30
ACGTcount: A:0.28, C:0.05, G:0.00, T:0.67
Consensus pattern (10 bp):
TTATTATATT
Found at i:25091193 original size:6 final size:6
Alignment explanation
Indices: 25091172--25091324 Score: 100
Period size: 6 Copynumber: 24.8 Consensus size: 6
25091162 TATTAGAACT
* * * * *
25091172 AGAATC AAAATG AGAATC AGAATC AG-GTGAC AAAATC AAAATC AGAATC
1 AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC AGAATC
* * *
25091221 AGAATC AAAATC AGTATC AGGTAA-C AGAATC AGAATC AGAACC AGAATC
1 AGAATC AGAATC AGAATC A-G-AATC AGAATC AGAATC AGAATC AGAATC
* *
25091270 AAAATT AGGTAA-C AGAATC AGAATC AGTAA-C AGGTAA-C AGAATC AGAATC
1 AGAATC A-G-AATC AGAATC AGAATC AG-AATC A-G-AATC AGAATC AGAATC
25091320 AGAAT
1 AGAAT
25091325 GTGAATGCAA
Statistics
Matches: 117, Mismatches: 18, Indels: 24
0.74 0.11 0.15
Matches are distributed among these distances:
5 7 0.06
6 92 0.79
7 14 0.12
8 4 0.03
ACGTcount: A:0.51, C:0.15, G:0.17, T:0.17
Consensus pattern (6 bp):
AGAATC
Found at i:25091220 original size:43 final size:43
Alignment explanation
Indices: 25091172--25091274 Score: 125
Period size: 43 Copynumber: 2.4 Consensus size: 43
25091162 TATTAGAACT
* * *
25091172 AGAATCAAAATGAGAATCAGAATCAGGTGACAAAATCAAAATC
1 AGAATCAAAATCAAAATCAGAATCAGGTAACAAAATCAAAATC
* * * *
25091215 AGAATCAGAATCAAAATCAGTATCAGGTAACAGAATCAGAATC
1 AGAATCAAAATCAAAATCAGAATCAGGTAACAAAATCAAAATC
* *
25091258 AGAACCAGAATCAAAAT
1 AGAATCAAAATCAAAAT
25091275 TAGGTAACAG
Statistics
Matches: 52, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
43 52 1.00
ACGTcount: A:0.52, C:0.16, G:0.16, T:0.17
Consensus pattern (43 bp):
AGAATCAAAATCAAAATCAGAATCAGGTAACAAAATCAAAATC
Found at i:25091252 original size:37 final size:37
Alignment explanation
Indices: 25091211--25091296 Score: 127
Period size: 37 Copynumber: 2.3 Consensus size: 37
25091201 ACAAAATCAA
* **
25091211 AATCAGAATCAGAATCAAAATCAGTATCAGGTAACAG
1 AATCAGAATCAGAACCAAAATCAAAATCAGGTAACAG
* *
25091248 AATCAGAATCAGAACCAGAATCAAAATTAGGTAACAG
1 AATCAGAATCAGAACCAAAATCAAAATCAGGTAACAG
25091285 AATCAGAATCAG
1 AATCAGAATCAG
25091297 TAACAGGTAA
Statistics
Matches: 44, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 44 1.00
ACGTcount: A:0.50, C:0.16, G:0.16, T:0.17
Consensus pattern (37 bp):
AATCAGAATCAGAACCAAAATCAAAATCAGGTAACAG
Found at i:25091291 original size:25 final size:25
Alignment explanation
Indices: 25091257--25091323 Score: 91
Period size: 25 Copynumber: 2.7 Consensus size: 25
25091247 GAATCAGAAT
* *
25091257 CAGAACCAGAATCA-AAATTAGGTAA
1 CAGAATCAGAATCAGAAA-CAGGTAA
*
25091282 CAGAATCAGAATCAGTAACAGGTAA
1 CAGAATCAGAATCAGAAACAGGTAA
25091307 CAGAATCAGAATCAGAA
1 CAGAATCAGAATCAGAA
25091324 TGTGAATGCA
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
25 35 0.95
26 2 0.05
ACGTcount: A:0.51, C:0.16, G:0.18, T:0.15
Consensus pattern (25 bp):
CAGAATCAGAATCAGAAACAGGTAA
Found at i:25091292 original size:43 final size:43
Alignment explanation
Indices: 25091224--25091321 Score: 96
Period size: 43 Copynumber: 2.3 Consensus size: 43
25091214 CAGAATCAGA
*
25091224 ATCAAAATCAGTATCAGGTAACAGAATCAGAATCAGAACCAGA
1 ATCAAAATCAGTAACAGGTAACAGAATCAGAATCAGAACCAGA
*
25091267 ATCAAAATTAGGTAACA-G-AATCAGAATCAGTAA-CAGGTAA-CAGA
1 ATCAAAATCA-GTAACAGGTAA-CAGAATCAG-AATCA-G-AACCAGA
*
25091311 ATCAGAATCAG
1 ATCAAAATCAG
25091322 AATGTGAATG
Statistics
Matches: 46, Mismatches: 4, Indels: 10
0.77 0.07 0.17
Matches are distributed among these distances:
42 2 0.04
43 22 0.48
44 20 0.43
45 2 0.04
ACGTcount: A:0.49, C:0.16, G:0.17, T:0.17
Consensus pattern (43 bp):
ATCAAAATCAGTAACAGGTAACAGAATCAGAATCAGAACCAGA
Found at i:25091769 original size:27 final size:27
Alignment explanation
Indices: 25091739--25091987 Score: 279
Period size: 27 Copynumber: 9.3 Consensus size: 27
25091729 GGGGTAAAAT
* * *
25091739 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
25091766 GGTAATTCTACCTTAC-AGGAGTATTTC
1 GGTAATTCTACCCTACAAGG-GTATTTC
*
25091793 AGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
25091820 GATAATTCTA-CCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
25091846 GGTAATTCTACCTTACAGGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
25091873 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
25091900 TGTATTTCTACCCTA-TAGAGGTATTTC
1 GGTAATTCTACCCTACAAG-GGTATTTC
* * *
25091927 GATATTTCTATCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
25091954 GGCATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
25091981 GATAATT
1 GGTAATT
25091988 TTGTAAATCG
Statistics
Matches: 188, Mismatches: 29, Indels: 10
0.83 0.13 0.04
Matches are distributed among these distances:
26 29 0.15
27 154 0.82
28 5 0.03
ACGTcount: A:0.26, C:0.20, G:0.17, T:0.37
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:25091864 original size:80 final size:80
Alignment explanation
Indices: 25091741--25091987 Score: 304
Period size: 80 Copynumber: 3.1 Consensus size: 80
25091731 GGTAAAATGG
* * *
25091741 TAATTTTACCCCACAAGGGTATCTCGGTAATTCTACCTTACAGGAGTATTTCAGTAATTCTACCC
1 TAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCTTACAGG-GTATTTCAGTAATTCTACCC
25091806 TACAAGGGTATTTCGA
65 TACAAGGGTATTTCGA
*
25091822 TAATTCTA-CCTACAAGGGTATTTCGGTAATTCTACCTTACAGGGGTATTTTAGTAATTCTACCC
1 TAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCTTACA-GGGTATTTCAGTAATTCTACCC
*
25091886 TACAGGGGTATTTCTG-
65 TACAAGGGTATTTC-GA
* * * * * * *
25091902 TATTTCTACCCTA-TAGAGGTATTTCGATATTTCTATCC-TACAAGGGTATTTCGGCATTTCTAC
1 TAATTCTACCCTACAAG-GGTATTTCGGTAATTCTA-CCTTAC-AGGGTATTTCAGTAATTCTAC
25091965 CCTACAAGGGTATTTCGA
63 CCTACAAGGGTATTTCGA
25091983 TAATT
1 TAATT
25091988 TTGTAAATCG
Statistics
Matches: 144, Mismatches: 15, Indels: 14
0.83 0.09 0.08
Matches are distributed among these distances:
80 73 0.51
81 68 0.47
82 3 0.02
ACGTcount: A:0.26, C:0.20, G:0.17, T:0.37
Consensus pattern (80 bp):
TAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCTTACAGGGTATTTCAGTAATTCTACCCT
ACAAGGGTATTTCGA
Found at i:25092057 original size:27 final size:27
Alignment explanation
Indices: 25092024--25092393 Score: 416
Period size: 27 Copynumber: 13.7 Consensus size: 27
25092014 TCTGTAAATT
* **
25092024 AAGGGTACTTTGGTAATTTTACAAGTC
1 AAGGGTATTTTGGTAATTTTACAAACC
* *** ***
25092051 AAAGGTATTTCAATAATTTTACAGGTC
1 AAGGGTATTTTGGTAATTTTACAAACC
* ** * *
25092078 GAGGGTATTTCAGTAATTTCACAAATC
1 AAGGGTATTTTGGTAATTTTACAAACC
*
25092105 AGGGGTATTTTGGTAATTTTACAAACC
1 AAGGGTATTTTGGTAATTTTACAAACC
* *
25092132 AAAGGTATTTTGGTAATTTTACAAACT
1 AAGGGTATTTTGGTAATTTTACAAACC
* * *
25092159 AGGGGTATTTTGGTAATTTTATAAGCC
1 AAGGGTATTTTGGTAATTTTACAAACC
*
25092186 AAGGGTATTTTAGTAATTTTACAAACC
1 AAGGGTATTTTGGTAATTTTACAAACC
* * **
25092213 AGGGGTATTTTAGTAATTTTGTAAACC
1 AAGGGTATTTTGGTAATTTTACAAACC
25092240 AAGGGTATTTTGGTAATTTTACAAACC
1 AAGGGTATTTTGGTAATTTTACAAACC
* * * *
25092267 AGGGGTATTTTGGTGATTTTATAAACT
1 AAGGGTATTTTGGTAATTTTACAAACC
*
25092294 AAGGGTATTTTAGTAATTTTACAAACC
1 AAGGGTATTTTGGTAATTTTACAAACC
* * *
25092321 AGGGGTATTTTGGTGATTTTATAAACC
1 AAGGGTATTTTGGTAATTTTACAAACC
*
25092348 AAGGGTATTTTAGTAATTTTACAAACC
1 AAGGGTATTTTGGTAATTTTACAAACC
*
25092375 AGGGGTATTTTGGTAATTT
1 AAGGGTATTTTGGTAATTT
25092394 GGTAAACTAA
Statistics
Matches: 287, Mismatches: 56, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 287 1.00
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.39
Consensus pattern (27 bp):
AAGGGTATTTTGGTAATTTTACAAACC
Found at i:25092144 original size:108 final size:106
Alignment explanation
Indices: 25092024--25092393 Score: 479
Period size: 108 Copynumber: 3.4 Consensus size: 106
25092014 TCTGTAAATT
* * ** *** * * * *
25092024 AAGGGTACTTTGGTAATTTTACAAGTCAAAGGTATTTCAATAATTTTACAGGTCGAGGGTATTTC
1 AAGGGTATTTTGGTAATTTTACAA-ACAGGGGTATTTTGGTAATTTTATA-GACAAGGGTATTTT
* * *
25092089 AGTAATTTCACAAATCAGGGGTATTTTGGTAATTTTACAAACC
64 AGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACC
* *
25092132 AAAGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTATAAGCCAAGGGTATTTT
1 AAGGGTATTTTGGTAATTTTACAAAC-AGGGGTATTTTGGTAATTTTAT-AGACAAGGGTATTTT
* *
25092197 AGTAATTTTACAAACCAGGGGTATTTTAGTAATTTTGTAAACC
64 AGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACC
* *
25092240 AAGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTGATTTTATAAACTAAGGGTATTTT
1 AAGGGTATTTTGGTAATTTTACAAA-CAGGGGTATTTTGGTAATTTTATAGAC-AAGGGTATTTT
*
25092305 AGTAATTTTACAAACCAGGGGTATTTTGGTGATTTTATAAACC
64 AGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACC
*
25092348 AAGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTT
1 AAGGGTATTTTGGTAATTTTACAAA-CAGGGGTATTTTGGTAATTT
25092394 GGTAAACTAA
Statistics
Matches: 232, Mismatches: 26, Indels: 8
0.87 0.10 0.03
Matches are distributed among these distances:
107 3 0.01
108 227 0.98
109 2 0.01
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.39
Consensus pattern (106 bp):
AAGGGTATTTTGGTAATTTTACAAACAGGGGTATTTTGGTAATTTTATAGACAAGGGTATTTTAG
TAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACC
Found at i:25092400 original size:54 final size:54
Alignment explanation
Indices: 25092079--25092393 Score: 504
Period size: 54 Copynumber: 5.8 Consensus size: 54
25092069 TTACAGGTCG
* * * *
25092079 AGGGTATTTCAGTAATTTCACAAATCAGGGGTATTTTGGTAATTTTACAAACCA
1 AGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACCA
* * * *
25092133 AAGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTATAAGCCA
1 AGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACCA
* *
25092187 AGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTAGTAATTTTGTAAACCA
1 AGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACCA
* * *
25092241 AGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTGATTTTATAAACTA
1 AGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACCA
*
25092295 AGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTGATTTTATAAACCA
1 AGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACCA
25092349 AGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTT
1 AGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTT
25092394 GGTAAACTAA
Statistics
Matches: 239, Mismatches: 22, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
54 239 1.00
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.39
Consensus pattern (54 bp):
AGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACCA
Found at i:25092617 original size:20 final size:20
Alignment explanation
Indices: 25092586--25092632 Score: 87
Period size: 20 Copynumber: 2.4 Consensus size: 20
25092576 AGGCCCATTG
25092586 GGCCCA-CATGGCCCCTTTC
1 GGCCCATCATGGCCCCTTTC
25092605 GGCCCATCATGGCCCCTTTC
1 GGCCCATCATGGCCCCTTTC
25092625 GGCCCATC
1 GGCCCATC
25092633 GCGGCCCAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
19 6 0.22
20 21 0.78
ACGTcount: A:0.11, C:0.47, G:0.21, T:0.21
Consensus pattern (20 bp):
GGCCCATCATGGCCCCTTTC
Found at i:25092638 original size:20 final size:20
Alignment explanation
Indices: 25092586--25092639 Score: 74
Period size: 20 Copynumber: 2.8 Consensus size: 20
25092576 AGGCCCATTG
*
25092586 GGCCCA-CATGGCCCCTTTC
1 GGCCCATCACGGCCCCTTTC
*
25092605 GGCCCATCATGGCCCCTTTC
1 GGCCCATCACGGCCCCTTTC
*
25092625 GGCCCATCGCGGCCC
1 GGCCCATCACGGCCC
25092640 AAAGTAGCCA
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
19 6 0.19
20 26 0.81
ACGTcount: A:0.09, C:0.48, G:0.24, T:0.19
Consensus pattern (20 bp):
GGCCCATCACGGCCCCTTTC
Found at i:25095379 original size:47 final size:47
Alignment explanation
Indices: 25095310--25095403 Score: 188
Period size: 47 Copynumber: 2.0 Consensus size: 47
25095300 AAGAAAGAAG
25095310 AAAAGAGTGGGATGACAACCTAAGGGTTTCAAACTTTTCAACTTCAA
1 AAAAGAGTGGGATGACAACCTAAGGGTTTCAAACTTTTCAACTTCAA
25095357 AAAAGAGTGGGATGACAACCTAAGGGTTTCAAACTTTTCAACTTCAA
1 AAAAGAGTGGGATGACAACCTAAGGGTTTCAAACTTTTCAACTTCAA
25095404 TTGGTTAGTC
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 47 1.00
ACGTcount: A:0.38, C:0.17, G:0.19, T:0.26
Consensus pattern (47 bp):
AAAAGAGTGGGATGACAACCTAAGGGTTTCAAACTTTTCAACTTCAA
Found at i:25100435 original size:19 final size:19
Alignment explanation
Indices: 25100411--25100449 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
25100401 ATGGAAAATG
25100411 AATAATTGTTGATAGTTTT
1 AATAATTGTTGATAGTTTT
25100430 AATAATTGTTGATAGTTTT
1 AATAATTGTTGATAGTTTT
25100449 A
1 A
25100450 CATGTTTTGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.33, C:0.00, G:0.15, T:0.51
Consensus pattern (19 bp):
AATAATTGTTGATAGTTTT
Found at i:25101122 original size:43 final size:42
Alignment explanation
Indices: 25101003--25101132 Score: 120
Period size: 43 Copynumber: 3.0 Consensus size: 42
25100993 ACATTAGGTT
*
25101003 ATCGATACGTGATTACATGTAAGACCATGTCTGGGACATTGGC
1 ATCGATATGTGATTACATGTAAGACCATGTCTGGGACA-TGGC
* * ** * *
25101046 GTCGTTAAT-CAATTTCATGTAA-AACACTGTCTGGGACAGTGGC
1 ATCGAT-ATGTGATTACATGTAAGACCA-TGTCTGGGACA-TGGC
* * *
25101089 ATCGATATGTGATAACATGTAAGACCATATCTGGGATATGGC
1 ATCGATATGTGATTACATGTAAGACCATGTCTGGGACATGGC
25101131 AT
1 AT
25101133 TGTACGAGCT
Statistics
Matches: 66, Mismatches: 17, Indels: 9
0.72 0.18 0.10
Matches are distributed among these distances:
42 11 0.17
43 51 0.77
44 4 0.06
ACGTcount: A:0.30, C:0.17, G:0.24, T:0.29
Consensus pattern (42 bp):
ATCGATATGTGATTACATGTAAGACCATGTCTGGGACATGGC
Found at i:25103594 original size:25 final size:25
Alignment explanation
Indices: 25103556--25103603 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
25103546 CAAGCGAGGC
*
25103556 ATATTAGGAAGCTCATAAAGAGCCT
1 ATATCAGGAAGCTCATAAAGAGCCT
*
25103581 ATATCAGGACGCTCATAAAGAGC
1 ATATCAGGAAGCTCATAAAGAGC
25103604 TGGATTTGTG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.40, C:0.19, G:0.21, T:0.21
Consensus pattern (25 bp):
ATATCAGGAAGCTCATAAAGAGCCT
Found at i:25105966 original size:64 final size:66
Alignment explanation
Indices: 25105813--25106001 Score: 224
Period size: 64 Copynumber: 2.8 Consensus size: 66
25105803 GATACAGATG
** * * *
25105813 ATATGTAGCTAGGTCACATGTATGGTGCTGAGTGCACATCATGTGTACAAGAGAGCTACGAGACA
1 ATATGTAGCTAGGTCACATGGGTGGTACT-AGTGTACACCATGTGTACAAGAGAGCTACGAGACA
25105878 TT
65 TT
* *
25105880 ATGATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGCTACG-G-
1 AT-ATGTAGCTAGGTCACATGGGTGGTACTA-GTGTACACCATGT-GTACAAGAGAGCTACGAGA
*
25105942 GA-T
63 CATT
*
25105945 ATATGTAGCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGTGTACAAGAGAGCT
1 ATATGTAGCTAGGTCACATGGGTGGTACT-AGTGTACACCATGTGTACAAGAGAGCT
25106002 GAACTATATG
Statistics
Matches: 106, Mismatches: 11, Indels: 13
0.82 0.08 0.10
Matches are distributed among these distances:
63 1 0.01
64 48 0.45
65 4 0.04
66 1 0.01
67 4 0.04
68 47 0.44
69 1 0.01
ACGTcount: A:0.29, C:0.16, G:0.29, T:0.26
Consensus pattern (66 bp):
ATATGTAGCTAGGTCACATGGGTGGTACTAGTGTACACCATGTGTACAAGAGAGCTACGAGACAT
T
Found at i:25134299 original size:79 final size:80
Alignment explanation
Indices: 25134210--25134359 Score: 216
Period size: 79 Copynumber: 1.9 Consensus size: 80
25134200 TCGGTTATAG
* *
25134210 TAACTCGCACGAATGCCTTCGGGA-CTTAACCCGGGTTTAGTAAC-TCGCACAAATGCCTTCGGG
1 TAACTCGCACGAATGCCTTC-GGATCTTAACCCGGATATAGTAACTTCGCACAAA-GCCTTCGGG
25134273 -CTTAGCCTGGATTTAT
64 ACTTAGCCTGGATTTAT
** *
25134289 TAACTCGCACGAATGCCTTCGGATCTTAGTCCGGATATAGTCACTTCGCACAAAGCCTTCGGGAC
1 TAACTCGCACGAATGCCTTCGGATCTTAACCCGGATATAGTAACTTCGCACAAAGCCTTCGGGAC
25134354 TTAGCC
66 TTAGCC
25134360 CGGACATCAT
Statistics
Matches: 63, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
78 3 0.05
79 44 0.70
80 16 0.25
ACGTcount: A:0.23, C:0.28, G:0.22, T:0.27
Consensus pattern (80 bp):
TAACTCGCACGAATGCCTTCGGATCTTAACCCGGATATAGTAACTTCGCACAAAGCCTTCGGGAC
TTAGCCTGGATTTAT
Found at i:25134304 original size:39 final size:39
Alignment explanation
Indices: 25134172--25134359 Score: 195
Period size: 40 Copynumber: 4.7 Consensus size: 39
25134162 GGATATAACG
* **
25134172 ACTCGCTCGAATGCCTTCGGGACAAAGCTCGG-TTATAGTA
1 ACTCGCACGAATGCCTTCGGGACTTAGC-CGGATT-TAGTA
* *
25134212 ACTCGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTA
1 ACTCGCACGAATGCCTTCGGGACTT-AGCCGGATTTAGTA
* *
25134252 ACTCGCACAAATGCCTTCGGG-CTTAGCCTGGATTTATTA
1 ACTCGCACGAATGCCTTCGGGACTTAGCC-GGATTTAGTA
* *
25134291 ACTCGCACGAATGCCTTC-GGATCTTAGTCCGGATATAGTC
1 ACTCGCACGAATGCCTTCGGGA-CTTAG-CCGGATTTAGTA
*
25134331 ACTTCGCAC-AAAGCCTTCGGGACTTAGCC
1 AC-TCGCACGAATGCCTTCGGGACTTAGCC
25134360 CGGACATCAT
Statistics
Matches: 127, Mismatches: 13, Indels: 17
0.81 0.08 0.11
Matches are distributed among these distances:
38 5 0.04
39 30 0.24
40 77 0.61
41 15 0.12
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.26
Consensus pattern (39 bp):
ACTCGCACGAATGCCTTCGGGACTTAGCCGGATTTAGTA
Found at i:25138613 original size:43 final size:43
Alignment explanation
Indices: 25138565--25138678 Score: 169
Period size: 43 Copynumber: 2.7 Consensus size: 43
25138555 TGTAATTACA
* *
25138565 TGTAAGACCATGTCTGGGACATTGGCATT-GTATTGTGATTAT-G
1 TGTAAGACCATGTCTGGGACATTGGCATTATTA-TATGATT-TCG
*
25138608 TGTAAGACCATGTCTAGGACATTGGCATTATTATATGATTTCG
1 TGTAAGACCATGTCTGGGACATTGGCATTATTATATGATTTCG
25138651 TGTAAGACCATGTCTGGGACATTGGCAT
1 TGTAAGACCATGTCTGGGACATTGGCAT
25138679 CGATATATTA
Statistics
Matches: 65, Mismatches: 4, Indels: 4
0.89 0.05 0.05
Matches are distributed among these distances:
42 1 0.02
43 62 0.95
44 2 0.03
ACGTcount: A:0.25, C:0.14, G:0.25, T:0.35
Consensus pattern (43 bp):
TGTAAGACCATGTCTGGGACATTGGCATTATTATATGATTTCG
Found at i:25138686 original size:43 final size:42
Alignment explanation
Indices: 25138565--25138701 Score: 161
Period size: 43 Copynumber: 3.2 Consensus size: 42
25138555 TGTAATTACA
*
25138565 TGTAAGACCATGTCTGGGACATTGGCATTG-TATTGTGATTAT-G
1 TGTAAGACCATGTCTGGGACATTGGCA-TGATA-TATGATT-TCG
* *
25138608 TGTAAGACCATGTCTAGGACATTGGCATTATTATATGATTTCG
1 TGTAAGACCATGTCTGGGACATTGGCATGA-TATATGATTTCG
* * *
25138651 TGTAAGACCATGTCTGGGACATTGGCATCGATATATTATATCA
1 TGTAAGACCATGTCTGGGACATTGGCAT-GATATATGATTTCG
25138694 TGTAAGAC
1 TGTAAGAC
25138702 TATAACTGGG
Statistics
Matches: 82, Mismatches: 8, Indels: 8
0.84 0.08 0.08
Matches are distributed among these distances:
42 2 0.02
43 77 0.94
44 3 0.04
ACGTcount: A:0.28, C:0.14, G:0.23, T:0.35
Consensus pattern (42 bp):
TGTAAGACCATGTCTGGGACATTGGCATGATATATGATTTCG
Found at i:25138711 original size:43 final size:43
Alignment explanation
Indices: 25138563--25138720 Score: 110
Period size: 43 Copynumber: 3.7 Consensus size: 43
25138553 GATGTAATTA
** *
25138563 CATGTAAGACCATGTCTGGGACATTGGCAT--TGTATTGTGATTAT
1 CATGTAAGACCATAACTGGGACATTGGCATGAT-TA-TATGA-TAT
* ** * * *
25138607 -GTGTAAGACCATGTCTAGGACATTGGCATTATTATATGATTT
1 CATGTAAGACCATAACTGGGACATTGGCATGATTATATGATAT
* ** *
25138649 CGTGTAAGACCATGTCTGGGACATTGGCATCGA-TATATTATAT
1 CATGTAAGACCATAACTGGGACATTGGCAT-GATTATATGATAT
* *
25138692 CATGTAAGACTATAACTGGGATA-TGGCAT
1 CATGTAAGACCATAACTGGGACATTGGCAT
25138721 TGTACGAGCT
Statistics
Matches: 97, Mismatches: 13, Indels: 10
0.81 0.11 0.08
Matches are distributed among these distances:
42 8 0.08
43 85 0.88
44 3 0.03
45 1 0.01
ACGTcount: A:0.28, C:0.14, G:0.23, T:0.34
Consensus pattern (43 bp):
CATGTAAGACCATAACTGGGACATTGGCATGATTATATGATAT
Found at i:25143189 original size:48 final size:48
Alignment explanation
Indices: 25143137--25143330 Score: 318
Period size: 48 Copynumber: 4.0 Consensus size: 48
25143127 TACATGAATT
* * *
25143137 CACATATCATCACCGATGCCATGTCCCT-GACATGGTCTTACTCTGGCA
1 CACATATCATCGCCGATGCCATGT-CCTAGACATGGTCTTACACAGGCA
*
25143185 CACATATCATCGCCGATGCCATGTCCTAGACATGGTCTTACACTGGCA
1 CACATATCATCGCCGATGCCATGTCCTAGACATGGTCTTACACAGGCA
*
25143233 CACATATCATCGCCGATGCCATGTCCTAGACATGGTGTTACACAGGCA
1 CACATATCATCGCCGATGCCATGTCCTAGACATGGTCTTACACAGGCA
*
25143281 CACATATCATCGCCGATGCCATGTCCCAGACATGGTCTTACACAGGCA
1 CACATATCATCGCCGATGCCATGTCCTAGACATGGTCTTACACAGGCA
25143329 CA
1 CA
25143331 TTCAGCACTG
Statistics
Matches: 139, Mismatches: 6, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
47 3 0.02
48 136 0.98
ACGTcount: A:0.26, C:0.32, G:0.19, T:0.24
Consensus pattern (48 bp):
CACATATCATCGCCGATGCCATGTCCTAGACATGGTCTTACACAGGCA
Found at i:25144925 original size:40 final size:40
Alignment explanation
Indices: 25144880--25145046 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
25144870 CGGAATATAA
25144880 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
25144920 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** ** *
25144960 CCGGATATAGCCACTAGCACATTTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
25145000 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
25145039 CCGGATAT
1 CCGGATAT
25145047 CATTCAATTT
Statistics
Matches: 105, Mismatches: 21, Indels: 3
0.81 0.16 0.02
Matches are distributed among these distances:
39 14 0.13
40 91 0.87
ACGTcount: A:0.24, C:0.27, G:0.22, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:25148909 original size:26 final size:26
Alignment explanation
Indices: 25148878--25148930 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
25148868 CTTTCAAACA
25148878 TAACCAATACCGATTTAACAACCAAG
1 TAACCAATACCGATTTAACAACCAAG
25148904 TAACCAATACCGATTTAACAACCAAG
1 TAACCAATACCGATTTAACAACCAAG
25148930 T
1 T
25148931 CAGTCTTAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.45, C:0.26, G:0.08, T:0.21
Consensus pattern (26 bp):
TAACCAATACCGATTTAACAACCAAG
Found at i:25149290 original size:15 final size:15
Alignment explanation
Indices: 25149242--25149314 Score: 51
Period size: 15 Copynumber: 4.8 Consensus size: 15
25149232 TAAAAATGAC
*
25149242 AAGAAAACCAA-ATA
1 AAGAAATCCAAGATA
* * *
25149256 AATAAGTCCAAGACA
1 AAGAAATCCAAGATA
*
25149271 GAGAAATCCAAGATA
1 AAGAAATCCAAGATA
*
25149286 AAGAAACTCCTAAGATTC
1 AAGAAA-TCC-AAGA-TA
25149304 AA-AAATCCAAG
1 AAGAAATCCAAG
25149315 TTACAATACC
Statistics
Matches: 45, Mismatches: 10, Indels: 7
0.73 0.16 0.11
Matches are distributed among these distances:
14 8 0.18
15 21 0.47
16 6 0.13
17 7 0.16
18 3 0.07
ACGTcount: A:0.56, C:0.18, G:0.12, T:0.14
Consensus pattern (15 bp):
AAGAAATCCAAGATA
Found at i:25149855 original size:73 final size:73
Alignment explanation
Indices: 25149736--25149883 Score: 287
Period size: 73 Copynumber: 2.0 Consensus size: 73
25149726 AAAAGACTGA
*
25149736 CAAAATCTGTTCAGCCATAACTGTCACACTCAATGTCTTACCTTTCAAATATTATTCCTTCAACT
1 CAAAATCTGTTCAACCATAACTGTCACACTCAATGTCTTACCTTTCAAATATTATTCCTTCAACT
25149801 ATTTCTGT
66 ATTTCTGT
25149809 CAAAATCTGTTCAACCATAACTGTCACACTCAATGTCTTACCTTTCAAATATTATTCCTTCAACT
1 CAAAATCTGTTCAACCATAACTGTCACACTCAATGTCTTACCTTTCAAATATTATTCCTTCAACT
25149874 ATTTCTGT
66 ATTTCTGT
25149882 CA
1 CA
25149884 TCACTAATCC
Statistics
Matches: 74, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
73 74 1.00
ACGTcount: A:0.30, C:0.26, G:0.06, T:0.38
Consensus pattern (73 bp):
CAAAATCTGTTCAACCATAACTGTCACACTCAATGTCTTACCTTTCAAATATTATTCCTTCAACT
ATTTCTGT
Found at i:25151732 original size:40 final size:41
Alignment explanation
Indices: 25151687--25151816 Score: 144
Period size: 40 Copynumber: 3.3 Consensus size: 41
25151677 CGGAATATAA
25151687 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACGTAGCACAAATGCCTTCGGGTCTTAGC
* * *
25151727 CCGGATAGAAT---GTTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACG-TAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
25151766 CCGGATGTAGCCAC-TAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACGTAGCACAAATGCCTTCGGGTCTTAGC
25151806 CCGGATATAAT
1 CCGGATATAAT
25151817 TTCCAGCATA
Statistics
Matches: 72, Mismatches: 13, Indels: 10
0.76 0.14 0.11
Matches are distributed among these distances:
37 1 0.01
38 1 0.01
39 30 0.42
40 40 0.56
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (41 bp):
CCGGATATAATCACGTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:25151830 original size:40 final size:40
Alignment explanation
Indices: 25151703--25151853 Score: 148
Period size: 40 Copynumber: 3.8 Consensus size: 40
25151693 ATAATCACGT
* *
25151703 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTT-C-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAAT-TTCCA
* **** *
25151742 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATTTCCA
*
25151782 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATTTCCA
* *
25151822 GCATAATTGTCTTCGGGAT-TTAGCCCGGATAT
1 GCACAATTGCCTTCGGG-TCTTAGCCCGGATAT
25151854 CATTCAATTT
Statistics
Matches: 90, Mismatches: 17, Indels: 9
0.78 0.15 0.08
Matches are distributed among these distances:
39 30 0.33
40 59 0.66
41 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.24, T:0.28
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATTTCCA
Found at i:25162630 original size:40 final size:40
Alignment explanation
Indices: 25162551--25162727 Score: 234
Period size: 40 Copynumber: 4.5 Consensus size: 40
25162541 CGGATGATAA
* * * *
25162551 CCGGACTAAGATCCGAAGGCATTCGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* * * *
25162591 CCGGGCTATGTCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-TTATAT
*
25162631 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
25162671 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
25162711 CC-GGCTAA-ATCCCGAAG
1 CCGGGCTAAGA-CCCGAAG
25162728 ATACTTGGGT
Statistics
Matches: 120, Mismatches: 14, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
38 1 0.01
39 15 0.12
40 102 0.85
41 2 0.02
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
Found at i:25168460 original size:43 final size:43
Alignment explanation
Indices: 25168399--25168518 Score: 179
Period size: 43 Copynumber: 2.8 Consensus size: 43
25168389 TAGGATTTTG
*
25168399 GATATGTGTTCTCGTGTAAGACCACGTCTGGGACATTGGCATC
1 GATATGTGTTCTCGTGTAAGACCACGTCTGGGACAGTGGCATC
* *
25168442 GATATGTGTTCTCGTGTAAGACCATGTCTAGGACAGTGGCATC
1 GATATGTGTTCTCGTGTAAGACCACGTCTGGGACAGTGGCATC
* *
25168485 GATATGTGATT-ACATGTAAGACCACGTCTGGGAC
1 GATATGTG-TTCTCGTGTAAGACCACGTCTGGGAC
25168519 GTTAGCATTG
Statistics
Matches: 69, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
43 67 0.97
44 2 0.03
ACGTcount: A:0.24, C:0.19, G:0.28, T:0.29
Consensus pattern (43 bp):
GATATGTGTTCTCGTGTAAGACCACGTCTGGGACAGTGGCATC
Found at i:25173984 original size:43 final size:43
Alignment explanation
Indices: 25173909--25174036 Score: 136
Period size: 43 Copynumber: 3.0 Consensus size: 43
25173899 TAGGATTTTT
*
25173909 GATATGTGTTCTCATGTAAGACCAC-GCCTGGGATGTTGGCATC
1 GATATGTGTTCTCATGTAAGACC-CTGTCTGGGATGTTGGCATC
* * * *
25173952 GATATGTGTTCTCGTGTAGGACCCTGTTTGGGAAAG-TGGCATC
1 GATATGTGTTCTCATGTAAGACCCTGTCTGGG-ATGTTGGCATC
* * *
25173995 GATGTGTGATT-ACATGTAAGACCATGTCTGGGATGTTGGCAT
1 GATATGTG-TTCTCATGTAAGACCCTGTCTGGGATGTTGGCAT
25174037 TGTACGATAT
Statistics
Matches: 69, Mismatches: 12, Indels: 8
0.78 0.13 0.09
Matches are distributed among these distances:
42 3 0.04
43 62 0.90
44 4 0.06
ACGTcount: A:0.21, C:0.16, G:0.30, T:0.32
Consensus pattern (43 bp):
GATATGTGTTCTCATGTAAGACCCTGTCTGGGATGTTGGCATC
Found at i:25176255 original size:66 final size:68
Alignment explanation
Indices: 25176177--25176363 Score: 281
Period size: 71 Copynumber: 2.7 Consensus size: 68
25176167 TAGTACCACT
*
25176177 CATGCGACCTAGC-CGATTTGTC-T-CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
25176239 CACG
65 CACG
25176243 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
25176308 ATCACG
63 ATCACG
25176314 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGG
25176364 GATACATCTC
Statistics
Matches: 114, Mismatches: 1, Indels: 7
0.93 0.01 0.06
Matches are distributed among these distances:
66 13 0.11
67 6 0.05
68 1 0.01
69 1 0.01
71 93 0.82
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (68 bp):
CATGCGACCTAGCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC
ACG
Found at i:25176288 original size:71 final size:71
Alignment explanation
Indices: 25176200--25176363 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
25176190 CGATTTGTCT
25176200 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
25176265 CTTTCA
66 CTTTCA
25176271 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
25176336 CTTTCA
66 CTTTCA
25176342 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
25176364 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:25176401 original size:71 final size:70
Alignment explanation
Indices: 25176200--25176397 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
25176190 CGATTTGTCT
* * * *
25176200 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
25176265 CTTTCA
65 CTTTCA
* * * *
25176271 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
25176336 CTTTCA
65 CTTTCA
* *
25176342 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
25176398 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:25178663 original size:48 final size:48
Alignment explanation
Indices: 25178575--25178706 Score: 140
Period size: 48 Copynumber: 2.8 Consensus size: 48
25178565 TAAAGTACCA
* * * * * ***
25178575 ATGCCATGTCCCCGACATGGTCTTACA-TGAACTCACATATCATCGTTG
1 ATGCCATGTCCCAGACATGGTCTTACACAG-GCACATATATCATCACCG
*
25178623 ATGCCATGTCCCAAACATGGTCTTACACAGGCACATATATCATCACCG
1 ATGCCATGTCCCAGACATGGTCTTACACAGGCACATATATCATCACCG
* * *
25178671 ACGCCATGTCCCAGACATGGTATTACACAAGCACAT
1 ATGCCATGTCCCAGACATGGTCTTACACAGGCACAT
25178707 TCTGTAACGC
Statistics
Matches: 70, Mismatches: 13, Indels: 2
0.82 0.15 0.02
Matches are distributed among these distances:
48 69 0.99
49 1 0.01
ACGTcount: A:0.30, C:0.30, G:0.16, T:0.24
Consensus pattern (48 bp):
ATGCCATGTCCCAGACATGGTCTTACACAGGCACATATATCATCACCG
Found at i:25180069 original size:46 final size:47
Alignment explanation
Indices: 25179963--25180084 Score: 147
Period size: 46 Copynumber: 2.6 Consensus size: 47
25179953 TGTCTTCGAC
** * *
25179963 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATATATCTAAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCC--A-ATATATCTAAT
* *
25180013 ATGGGCTTACATGGCTCATTCCTGTCTCCAAAGCC-ATATATCTGAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCAATATATCTAAT
*
25180059 ATGGACTTACATGGCTCATTTCTGTC
1 ATGGACTTACATGGCTCATTCCTGTC
25180085 CTGTCCTGTC
Statistics
Matches: 64, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
46 34 0.53
50 30 0.47
ACGTcount: A:0.26, C:0.23, G:0.15, T:0.36
Consensus pattern (47 bp):
ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCAATATATCTAAT
Found at i:25185632 original size:46 final size:47
Alignment explanation
Indices: 25185526--25185647 Score: 147
Period size: 46 Copynumber: 2.6 Consensus size: 47
25185516 TGTCTTCGAC
** * *
25185526 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATATATCTAAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCC--A-ATATATCTAAT
* *
25185576 ATGGGCTTACATGGCTCATTCCTGTCTCCAAAGCC-ATATATCTGAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCAATATATCTAAT
*
25185622 ATGGACTTACATGGCTCATTTCTGTC
1 ATGGACTTACATGGCTCATTCCTGTC
25185648 CTGTCCTGTC
Statistics
Matches: 64, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
46 34 0.53
50 30 0.47
ACGTcount: A:0.26, C:0.23, G:0.15, T:0.36
Consensus pattern (47 bp):
ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCAATATATCTAAT
Found at i:25189869 original size:48 final size:48
Alignment explanation
Indices: 25189817--25189911 Score: 190
Period size: 48 Copynumber: 2.0 Consensus size: 48
25189807 CATCATTTGG
25189817 AAAAAATCATCTTCAACATTAACCATCATATGAATGACTTCATCTCTT
1 AAAAAATCATCTTCAACATTAACCATCATATGAATGACTTCATCTCTT
25189865 AAAAAATCATCTTCAACATTAACCATCATATGAATGACTTCATCTCT
1 AAAAAATCATCTTCAACATTAACCATCATATGAATGACTTCATCTCT
25189912 CACTCTCTCA
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 47 1.00
ACGTcount: A:0.40, C:0.23, G:0.04, T:0.33
Consensus pattern (48 bp):
AAAAAATCATCTTCAACATTAACCATCATATGAATGACTTCATCTCTT
Found at i:25199580 original size:93 final size:93
Alignment explanation
Indices: 25199421--25199594 Score: 285
Period size: 93 Copynumber: 1.9 Consensus size: 93
25199411 CCGCCCATAA
* *
25199421 ACGAACTCGGACTCAACTCAACAAGCTCGGGCATTCGCATCCATCAGTGAACTCGGACTCAACTC
1 ACGAACTCGGACTCAACTCAACAAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTC
*
25199486 AACGAGCTCGGATGCCTAGTTACATCTC
66 AACGAGCTCAGATGCCTAGTTACATCTC
* *
25199514 ACGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTC
1 ACGAACTCGGACTCAACTCAACAAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTC
* *
25199579 AATGAGTTCAGATGCC
66 AACGAGCTCAGATGCC
25199595 CAAATATCCT
Statistics
Matches: 74, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.21
Consensus pattern (93 bp):
ACGAACTCGGACTCAACTCAACAAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTC
AACGAGCTCAGATGCCTAGTTACATCTC
Found at i:25199587 original size:46 final size:46
Alignment explanation
Indices: 25199423--25199580 Score: 189
Period size: 46 Copynumber: 3.4 Consensus size: 46
25199413 GCCCATAAAC
* *
25199423 GAACTCGGACTCAACTCAACAAGCTCGGGCATTCGCATCCATCAGT
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATCAGT
* *
25199469 GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT-C-TCA-C
1 GAACTCGGACTCAACTCAACGAGCTCGGA---C-A-TTCGCATCCATCAGT
* *
25199516 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATCAGT
25199562 GAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAA
25199581 TGAGTTCAGA
Statistics
Matches: 95, Mismatches: 8, Indels: 18
0.79 0.07 0.15
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 46 0.48
47 28 0.29
48 3 0.03
49 2 0.02
50 4 0.04
51 2 0.02
ACGTcount: A:0.30, C:0.31, G:0.19, T:0.20
Consensus pattern (46 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATCAGT
Found at i:25200048 original size:30 final size:30
Alignment explanation
Indices: 25200014--25200073 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
25200004 CCCTAATATG
25200014 AACTTTGGCAAAATTAC-CATTTTGCCCCTA
1 AACTTTGGCAAAATTACAC-TTTTGCCCCTA
* *
25200044 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
25200074 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
30 26 0.96
31 1 0.04
ACGTcount: A:0.28, C:0.27, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGCAAAATTACACTTTTGCCCCTA
Found at i:25207183 original size:93 final size:92
Alignment explanation
Indices: 25207025--25207197 Score: 224
Period size: 93 Copynumber: 1.9 Consensus size: 92
25207015 CCACCCATAA
* * * * * *
25207025 ACGAACTCGGACTCAACTCATGAGCTCGGGCGTTCGCATCCATCAATGAACTTGGACTCAACTCA
1 ACGAACTCGAACTCAACTAACGAGCTCGGACATTCGCATCCATCAATGAACTCGGACTCAACTCA
*
25207090 ATGAGCTCGGATGCCTAGTTACATCTC
66 ACGAGCTCGGATGCCTAGTTACATCTC
*
25207117 ACGAACTCGAACTCAACTTAACGAGTTCGGACATTCGCATCCAT-AAGTGAACTCGTG-CTCAAC
1 ACGAACTCGAACTCAAC-TAACGAGCTCGGACATTCGCATCCATCAA-TGAACTCG-GACTCAAC
*
25207180 TCAACGAGTTCGGATGCC
63 TCAACGAGCTCGGATGCC
25207198 CAAATATCCT
Statistics
Matches: 69, Mismatches: 9, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
92 18 0.26
93 50 0.72
94 1 0.01
ACGTcount: A:0.28, C:0.29, G:0.20, T:0.23
Consensus pattern (92 bp):
ACGAACTCGAACTCAACTAACGAGCTCGGACATTCGCATCCATCAATGAACTCGGACTCAACTCA
ACGAGCTCGGATGCCTAGTTACATCTC
Found at i:25207648 original size:30 final size:30
Alignment explanation
Indices: 25207614--25207673 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
25207604 CCCTAATATG
25207614 AACTTTGGCAAAATTAC-CATTTTGCCCCTA
1 AACTTTGGCAAAATTACAC-TTTTGCCCCTA
* *
25207644 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
25207674 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
30 26 0.96
31 1 0.04
ACGTcount: A:0.28, C:0.27, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGCAAAATTACACTTTTGCCCCTA
Found at i:25209650 original size:43 final size:42
Alignment explanation
Indices: 25209480--25209647 Score: 169
Period size: 43 Copynumber: 4.0 Consensus size: 42
25209470 CATAAGCTCG
* * * *
25209480 TACAATGCC-ATATCCCAGAGATGGTCTTACATGTTATCATA
1 TACAATGCCAATATCCCAGACATGGTCTTACACGTAATCAAA
* * * * * *
25209521 TATCGATGCCACTGTCCCAGACAGGGTCTTACACGAAATCAAT
1 TA-CAATGCCAATATCCCAGACATGGTCTTACACGTAATCAAA
*
25209564 TA-ATGATGCCAATATCCTAGACATGGTCTTACACGTAATCACAA
1 TACA--ATGCCAATATCCCAGACATGGTCTTACACGTAATCA-AA
* *
25209608 TACAATGCCAATGTCCCAGACATGGTCTTACATGTAATCA
1 TACAATGCCAATATCCCAGACATGGTCTTACACGTAATCA
25209648 CAACTCGATA
Statistics
Matches: 101, Mismatches: 20, Indels: 10
0.77 0.15 0.08
Matches are distributed among these distances:
41 2 0.02
42 6 0.06
43 89 0.88
44 3 0.03
45 1 0.01
ACGTcount: A:0.33, C:0.24, G:0.15, T:0.27
Consensus pattern (42 bp):
TACAATGCCAATATCCCAGACATGGTCTTACACGTAATCAAA
Found at i:25213457 original size:93 final size:93
Alignment explanation
Indices: 25213298--25213469 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
25213288 CGCCCATAAG
*** *
25213298 CGAACTCGGACTCAACTCAACGAGCTCGGGTGTTCGCATCCATGAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
25213363 ACCAGTTCGGATGCCTAGTTACATCTCA
66 ACCAGTTCGGATGCCTAGTTACATCTCA
* * *
25213391 CGAACTCGGACTCAACTTAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
25213456 ACGAGTTCGGATGC
66 ACCAGTTCGGATGC
25213470 TCAACCATCC
Statistics
Matches: 71, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACCAGTTCGGATGCCTAGTTACATCTCA
Found at i:25213459 original size:46 final size:46
Alignment explanation
Indices: 25213291--25213466 Score: 178
Period size: 46 Copynumber: 3.8 Consensus size: 46
25213281 TGTAACCCGC
* *** *
25213291 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGTGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
* * * * *
25213337 CCATGAGTGAACTCGGACTCAACTCAACCAGTTCGGATGCCTAGTTACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCAT
* *
25213387 -C-TCA-CGAACTCGGACTCAACTTAACGAGTTCGGACATTTGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
*
25213430 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
25213467 TGCTCAACCA
Statistics
Matches: 104, Mismatches: 19, Indels: 14
0.76 0.14 0.10
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 60 0.58
47 27 0.26
48 2 0.02
49 1 0.01
50 4 0.04
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
Found at i:25218853 original size:43 final size:43
Alignment explanation
Indices: 25218792--25218906 Score: 160
Period size: 43 Copynumber: 2.7 Consensus size: 43
25218782 GATGCCACTA
* * * * *
25218792 TCCCAAACAGGGTCTTACATGAAATCA-ATTAACAATGCTAATG
1 TCCCAGACATGGTCTTACATGTAATCACAAT-ACAATACTAATG
*
25218835 TCCCAGACATGGTCTTACACGTAATCACAATACAATACTAATG
1 TCCCAGACATGGTCTTACATGTAATCACAATACAATACTAATG
25218878 TCCCAGACATGGTCTTACATGTAATCACA
1 TCCCAGACATGGTCTTACATGTAATCACA
25218907 TCTTGATAAC
Statistics
Matches: 64, Mismatches: 7, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
43 62 0.97
44 2 0.03
ACGTcount: A:0.37, C:0.24, G:0.13, T:0.26
Consensus pattern (43 bp):
TCCCAGACATGGTCTTACATGTAATCACAATACAATACTAATG
Found at i:25224349 original size:60 final size:60
Alignment explanation
Indices: 25224256--25224376 Score: 242
Period size: 60 Copynumber: 2.0 Consensus size: 60
25224246 TGTTGAGATG
25224256 TTGCATTCTTGAGTTTGAAGGTATGTGGGAACAATATTTGCCTTTGATTGAATCCGCTTA
1 TTGCATTCTTGAGTTTGAAGGTATGTGGGAACAATATTTGCCTTTGATTGAATCCGCTTA
25224316 TTGCATTCTTGAGTTTGAAGGTATGTGGGAACAATATTTGCCTTTGATTGAATCCGCTTA
1 TTGCATTCTTGAGTTTGAAGGTATGTGGGAACAATATTTGCCTTTGATTGAATCCGCTTA
25224376 T
1 T
25224377 AATAACAGTT
Statistics
Matches: 61, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
60 61 1.00
ACGTcount: A:0.23, C:0.13, G:0.23, T:0.40
Consensus pattern (60 bp):
TTGCATTCTTGAGTTTGAAGGTATGTGGGAACAATATTTGCCTTTGATTGAATCCGCTTA
Found at i:25226429 original size:43 final size:42
Alignment explanation
Indices: 25226308--25226442 Score: 132
Period size: 43 Copynumber: 3.1 Consensus size: 42
25226298 AGACCACGTT
*
25226308 TGGGAC-GTTGGCATCG-ACTTATGATTTACATGTAAGACCATGTC
1 TGGGACAG-TGGCATCGTA-TT-TGA-TTACATGTAAGACCCTGTC
* *** *
25226352 TGGGACATTGGCATCGTATTTGATTTTGTCTAAGACCCTGTC
1 TGGGACAGTGGCATCGTATTTGATTACATGTAAGACCCTGTC
*
25226394 TGGGACAGTGGCATTGATATTTGATTACATGTAAGACCAC-GTC
1 TGGGACAGTGGCATCG-TATTTGATTACATGTAAGACC-CTGTC
25226437 TGGGAC
1 TGGGAC
25226443 GTTGGCCATG
Statistics
Matches: 75, Mismatches: 12, Indels: 9
0.78 0.12 0.09
Matches are distributed among these distances:
42 28 0.37
43 29 0.39
44 17 0.23
45 1 0.01
ACGTcount: A:0.24, C:0.18, G:0.26, T:0.33
Consensus pattern (42 bp):
TGGGACAGTGGCATCGTATTTGATTACATGTAAGACCCTGTC
Found at i:25230522 original size:40 final size:40
Alignment explanation
Indices: 25230464--25230685 Score: 304
Period size: 40 Copynumber: 5.6 Consensus size: 40
25230454 TGGATGATAA
* * * *
25230464 CCGGGCTAAGTCCTGAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
* *
25230504 CCGGGCTAAGTCCGGAAGGCATTTATGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
25230544 CCGAGCTAAGTCCCGAAGGCATTTGTGC-AGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
25230583 CCGGGCTAAGTCCTGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
25230623 TCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTATTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
25230663 CCGGGCTATGTCCCAAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATT
25230686 CGAGTAAGTA
Statistics
Matches: 163, Mismatches: 17, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 38 0.23
40 125 0.77
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.28
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:25230602 original size:79 final size:80
Alignment explanation
Indices: 25230468--25230685 Score: 296
Period size: 79 Copynumber: 2.7 Consensus size: 80
25230458 TGATAACCGG
* * * * *
25230468 GCTAAGTCCTGAAGGCATTTGCGCTAGTGACTAGT-TCCGGGCTAAGTCCGGAAGGCATTTATGC
1 GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TATCCGGGCTAAGTCCCGAAGGCATTTATGC
25230532 GAGTTACTATATCCGA
65 GAGTTACTATATCCGA
* *
25230548 GCTAAGTCCCGAAGGCATTTGTGC-AGTTACTATATCCGGGCTAAGTCCTGAAGGCATTTGTGCG
1 GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTATGCG
* *
25230612 AGTTACTATATTCGG
66 AGTTACTATATCCGA
* * * *
25230627 GCTAAGTCCCGAAGGCATTGGTGCGAGTTATTATATCCGGGCTATGTCCCAAAGGCATT
1 GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATT
25230686 CGAGTAAGTA
Statistics
Matches: 124, Mismatches: 12, Indels: 4
0.89 0.09 0.03
Matches are distributed among these distances:
78 1 0.01
79 71 0.57
80 52 0.42
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.28
Consensus pattern (80 bp):
GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTATGCG
AGTTACTATATCCGA
Found at i:25230676 original size:119 final size:119
Alignment explanation
Indices: 25230464--25230685 Score: 329
Period size: 119 Copynumber: 1.9 Consensus size: 119
25230454 TGGATGATAA
* * *
25230464 CCGGGCTAAGTCCTGAAGGCATTTGCGCTAGTGACTAGTTCCGGGCTAAGTCCGGAAGGCATTTA
1 CCGGGCTAAGTCCTGAAGGCATTTGCGCGAGTGACTAGTTCCGGGCTAAGTCCCGAAGGCATTGA
*
25230529 TGCGAGTTACTATATCCGAGCTAAGTCCCGAAGGCATTTGTGCAGTTACTATAT
66 TGCGAGTTACTATATCCGAGCTAAGTCCCAAAGGCATTTGTGCAGTTACTATAT
* * *
25230583 CCGGGCTAAGTCCTGAAGGCATTTGTGCGAGTTACTA-TATTCGGGCTAAGTCCCGAAGGCATTG
1 CCGGGCTAAGTCCTGAAGGCATTTGCGCGAGTGACTAGT-TCCGGGCTAAGTCCCGAAGGCATTG
* * * *
25230647 GTGCGAGTTATTATATCCGGGCTATGTCCCAAAGGCATT
65 ATGCGAGTTACTATATCCGAGCTAAGTCCCAAAGGCATT
25230686 CGAGTAAGTA
Statistics
Matches: 91, Mismatches: 11, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
118 1 0.01
119 90 0.99
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.28
Consensus pattern (119 bp):
CCGGGCTAAGTCCTGAAGGCATTTGCGCGAGTGACTAGTTCCGGGCTAAGTCCCGAAGGCATTGA
TGCGAGTTACTATATCCGAGCTAAGTCCCAAAGGCATTTGTGCAGTTACTATAT
Found at i:25230720 original size:79 final size:78
Alignment explanation
Indices: 25230467--25230720 Score: 244
Period size: 79 Copynumber: 3.2 Consensus size: 78
25230457 ATGATAACCG
* * * * ** *
25230467 GGCTAAGTCCTGAAGGCATTTGCGCTAGTGACTAGT-TCCGGGCTAAGTCCGGAAGGCATT-TAT
1 GGCTAAGTCCCGAAGGCATTGGTGC-AGTTACTA-TATCCGGGCTAAGTCCCAAAGGCATTCGA-
*
25230530 GCGAGTTACTATATCC
63 GCAAGTTACTATATCC
* ** * *
25230546 GAGCTAAGTCCCGAAGGCATTTGTGCAGTTACTATATCCGGGCTAAGTCCTGAAGGCATTTGTGC
1 G-GCTAAGTCCCGAAGGCATTGGTGCAGTTACTATATCCGGGCTAAGTCCCAAAGGCATTCGAGC
* *
25230611 GAGTTACTATATTCG
65 AAGTTACTATA-TCC
* * *
25230626 GGCTAAGTCCCGAAGGCATTGGTGCGAGTTATTATATCCGGGCTATGTCCCAAAGGCATTCGAGT
1 GGCTAAGTCCCGAAGGCATTGGTGC-AGTTACTATATCCGGGCTAAGTCCCAAAGGCATTCGAGC
25230691 AAG-TAGCTATATCC
65 AAGTTA-CTATATCC
* *
25230705 GGTTAAATCCCGAAGG
1 GGCTAAGTCCCGAAGG
25230721 TACTTGGCTT
Statistics
Matches: 150, Mismatches: 19, Indels: 12
0.83 0.10 0.07
Matches are distributed among these distances:
78 1 0.01
79 85 0.57
80 64 0.43
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (78 bp):
GGCTAAGTCCCGAAGGCATTGGTGCAGTTACTATATCCGGGCTAAGTCCCAAAGGCATTCGAGCA
AGTTACTATATCC
Found at i:25230720 original size:119 final size:119
Alignment explanation
Indices: 25230464--25230720 Score: 295
Period size: 119 Copynumber: 2.2 Consensus size: 119
25230454 TGGATGATAA
* * * * *
25230464 CCGGGCTAAGTCCTGAAGGCATTTGCGCTAGTGACTAGTTCCGGGCTAAGTCCGGAAGGCATTTA
1 CCGGGCTAAATCCCGAAGGCATTTGCGCGAGTGACTAGTTCCGGGCTAAGTCCCGAAGGCATTGA
* * * *
25230529 TGCGAGTTACTATATCCGAGCTAAGTCCCGAAGGCATTTGTGCAGTTACTATAT
66 TGCGAGTTACTATATCCGAGCTAAGTCCCAAAGGCATTCGAGAAGTTACTATAT
* * * * *
25230583 CCGGGCTAAGTCCTGAAGGCATTTGTGCGAGTTACTA-TATTCGGGCTAAGTCCCGAAGGCATTG
1 CCGGGCTAAATCCCGAAGGCATTTGCGCGAGTGACTAGT-TCCGGGCTAAGTCCCGAAGGCATTG
* * * *
25230647 GTGCGAGTTATTATATCCGGGCTATGTCCCAAAGGCATTCGAGTAAG-TAGCTATAT
65 ATGCGAGTTACTATATCCGAGCTAAGTCCCAAAGGCATTCGAG-AAGTTA-CTATAT
*
25230703 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAATCCCGAAGG
25230721 TACTTGGCTT
Statistics
Matches: 118, Mismatches: 17, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
118 1 0.01
119 107 0.91
120 10 0.08
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.27
Consensus pattern (119 bp):
CCGGGCTAAATCCCGAAGGCATTTGCGCGAGTGACTAGTTCCGGGCTAAGTCCCGAAGGCATTGA
TGCGAGTTACTATATCCGAGCTAAGTCCCAAAGGCATTCGAGAAGTTACTATAT
Found at i:25238617 original size:40 final size:40
Alignment explanation
Indices: 25238562--25238743 Score: 305
Period size: 40 Copynumber: 4.6 Consensus size: 40
25238552 TGGATGATAA
* * *
25238562 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
25238602 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
25238642 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
25238682 CCGGGCTAAGTCCCGAAGGCA-TTGTGTGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
25238721 CCGGGCTAAGTCCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATT
25238744 CGAGTAAGTA
Statistics
Matches: 136, Mismatches: 4, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
39 39 0.29
40 97 0.71
ACGTcount: A:0.22, C:0.24, G:0.29, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:25238774 original size:39 final size:39
Alignment explanation
Indices: 25238562--25238778 Score: 271
Period size: 40 Copynumber: 5.5 Consensus size: 39
25238552 TGGATGATAA
* *
25238562 CCGGGCTAAGTCCCGAAGGCATT-TGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTGTGTG--AGTTACTA-TAT
*
25238602 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCA-TTGTGTGAGTTACTATAT
*
25238642 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCA-TTGTGTGAGTTACTATAT
25238682 CCGGGCTAAGTCCCGAAGGCATTGTGTGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTGTGTGAGTTACTATAT
* *
25238721 CCGGGCTAAGTCCCGAAGGCATTCGAGTAAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATT-GTGTGAGTTA-CTATAT
* *
25238761 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
25238779 TACTTGGCTT
Statistics
Matches: 166, Mismatches: 6, Indels: 11
0.91 0.03 0.06
Matches are distributed among these distances:
39 57 0.34
40 103 0.62
41 2 0.01
42 4 0.02
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTGTGTGAGTTACTATAT
Found at i:25241973 original size:43 final size:42
Alignment explanation
Indices: 25241926--25242082 Score: 113
Period size: 42 Copynumber: 3.7 Consensus size: 42
25241916 AACATATACA
*
25241926 ATGCCAACGTCCTAGACGTGGTCTTACATGTAATCAAACATCG
1 ATGCCAACGTCCTAGACATGGTCTTACATGTAATCAAA-ATCG
* * *
25241969 ATGCC-ACTATCCTAGACATGGTCTTATATG-AAGTC-AGATACG
1 ATGCCAAC-GTCCTAGACATGGTCTTACATGTAA-TCAAAAT-CG
* * * * * * * *
25242011 ATGTCGATGTCCAAGACATTGTCTTACACGTAAAACAGAAGTCG
1 ATGCCAACGTCCTAGACATGGTCTTACATGT-AATCA-AAATCG
* *
25242055 ATGCCAACGTCCCAGACGTGGTCTTACA
1 ATGCCAACGTCCTAGACATGGTCTTACA
25242083 CGAATTCACA
Statistics
Matches: 86, Mismatches: 20, Indels: 15
0.71 0.17 0.12
Matches are distributed among these distances:
41 2 0.02
42 28 0.33
43 28 0.33
44 26 0.30
45 2 0.02
ACGTcount: A:0.31, C:0.24, G:0.20, T:0.25
Consensus pattern (42 bp):
ATGCCAACGTCCTAGACATGGTCTTACATGTAATCAAAATCG
Found at i:25249483 original size:42 final size:43
Alignment explanation
Indices: 25249383--25249539 Score: 135
Period size: 43 Copynumber: 3.7 Consensus size: 43
25249373 AACATATACA
* *
25249383 ATGCCAAC-GTCCCAGACGTGGTCTTACATGTAATCAAACATCG
1 ATGCC-ACTGTCCCAGACATGGTCTTACATGAAATCAAACATCG
* * * *
25249426 ATGCCACTATCCCAGACATGGTCTTATATGAAATCAGATA-CG
1 ATGCCACTGTCCCAGACATGGTCTTACATGAAATCAAACATCG
* * * *
25249468 ATGTCGA-TGTCCCAGACATGGTCTTACACGTAAAACAGAA-GTCG
1 ATG-CCACTGTCCCAGACATGGTCTTACATG-AAATCA-AACATCG
*
25249512 ATGCCAAC-GTCCCAGACGTGGTCTTACA
1 ATGCC-ACTGTCCCAGACATGGTCTTACA
25249540 CGAATTCACA
Statistics
Matches: 92, Mismatches: 15, Indels: 13
0.77 0.12 0.11
Matches are distributed among these distances:
42 27 0.29
43 39 0.42
44 26 0.28
ACGTcount: A:0.31, C:0.26, G:0.20, T:0.24
Consensus pattern (43 bp):
ATGCCACTGTCCCAGACATGGTCTTACATGAAATCAAACATCG
Found at i:25251426 original size:43 final size:43
Alignment explanation
Indices: 25251366--25251533 Score: 198
Period size: 43 Copynumber: 3.9 Consensus size: 43
25251356 TAAGCTCGTA
* * * * *
25251366 CAATGCC-ATATCCCAGATATGGTCTTACATGTTATTATATAT
1 CAATGCCAATGTCCCAGACATGGTCTTACATGTAATCACATAT
* * * * *
25251408 CAATGCCACTGTCCCAGATAGGGTCTTACACGAAATCACA-AT
1 CAATGCCAATGTCCCAGACATGGTCTTACATGTAATCACATAT
25251450 ACAATGCCAATGTCCCAGACATGGTCTTACATGTAATCACATTAT
1 -CAATGCCAATGTCCCAGACATGGTCTTACATGTAATCACA-TAT
*
25251495 -AATGCCAATGTCCTAGACATGGTCTTACATGTAATCACA
1 CAATGCCAATGTCCCAGACATGGTCTTACATGTAATCACA
25251534 ACTCGATAAC
Statistics
Matches: 108, Mismatches: 14, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
42 9 0.08
43 97 0.90
45 2 0.02
ACGTcount: A:0.33, C:0.24, G:0.14, T:0.29
Consensus pattern (43 bp):
CAATGCCAATGTCCCAGACATGGTCTTACATGTAATCACATAT
Found at i:25251507 original size:86 final size:85
Alignment explanation
Indices: 25251364--25251534 Score: 218
Period size: 86 Copynumber: 2.0 Consensus size: 85
25251354 CATAAGCTCG
* * * * * *
25251364 TACAATGCCATATCCCAGATATGGTCTTACATGTTATTATATATCAATGCCACTGTCCCAGATAG
1 TACAATGCCATATCCCAGACATGGTCTTACATGTAATCACATATCAATGCCAATGTCCCAGACAG
25251429 GGTCTTACACGAAATCACAA
66 GGTCTTACACGAAATCACAA
* *
25251449 TACAATGCCAATGTCCCAGACATGGTCTTACATGTAATCACATTAT-AATGCCAATGTCCTAGAC
1 TACAATGCC-ATATCCCAGACATGGTCTTACATGTAATCACA-TATCAATGCCAATGTCCCAGAC
* * *
25251513 ATGGTCTTACATGTAATCACAA
64 AGGGTCTTACACGAAATCACAA
25251535 CTCGATAACC
Statistics
Matches: 73, Mismatches: 11, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
85 9 0.12
86 61 0.84
87 3 0.04
ACGTcount: A:0.33, C:0.23, G:0.14, T:0.29
Consensus pattern (85 bp):
TACAATGCCATATCCCAGACATGGTCTTACATGTAATCACATATCAATGCCAATGTCCCAGACAG
GGTCTTACACGAAATCACAA
Found at i:25252059 original size:29 final size:30
Alignment explanation
Indices: 25252014--25252077 Score: 71
Period size: 29 Copynumber: 2.2 Consensus size: 30
25252004 TTATCATTTA
*
25252014 TTCACACATTTAACCCCACATTTTTAC-AT
1 TTCACACAATTAACCCCACATTTTTACAAT
*
25252043 TTCACA-AATTAACCCC-CTTTTTTTTACAAT
1 TTCACACAATTAACCCCAC--ATTTTTACAAT
25252073 TTCAC
1 TTCAC
25252078 TAAAAATCAC
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
27 1 0.03
28 9 0.30
29 13 0.43
30 7 0.23
ACGTcount: A:0.30, C:0.30, G:0.00, T:0.41
Consensus pattern (30 bp):
TTCACACAATTAACCCCACATTTTTACAAT
Found at i:25259553 original size:2 final size:2
Alignment explanation
Indices: 25259546--25259572 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
25259536 GTAAATTTAT
25259546 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
25259573 GTTTAGTTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:25260522 original size:14 final size:14
Alignment explanation
Indices: 25260503--25260538 Score: 63
Period size: 14 Copynumber: 2.6 Consensus size: 14
25260493 AAAATTGTGC
25260503 AATTTAATCCTTTT
1 AATTTAATCCTTTT
*
25260517 AATTTAATCTTTTT
1 AATTTAATCCTTTT
25260531 AATTTAAT
1 AATTTAAT
25260539 TTTCTTCTTA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.33, C:0.08, G:0.00, T:0.58
Consensus pattern (14 bp):
AATTTAATCCTTTT
Found at i:25261326 original size:17 final size:17
Alignment explanation
Indices: 25261306--25261339 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
25261296 ATAACGTTAA
25261306 AATTA-ATTTTTTATTAT
1 AATTATATTTTTT-TTAT
25261323 AATTATATTTTTTTTAT
1 AATTATATTTTTTTTAT
25261340 TGTATAACTA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (17 bp):
AATTATATTTTTTTTAT
Found at i:25264124 original size:42 final size:42
Alignment explanation
Indices: 25264010--25264116 Score: 133
Period size: 43 Copynumber: 2.5 Consensus size: 42
25264000 GAATTAAGCA
* * * *
25264010 ATCCGAGTTCGTTGAGTGGTCCAAGTTCATGATATGTATGAT
1 ATCCGAGCTCGTTGAGTGGTCCAAGTTCATGAGATATATGAC
* * * *
25264052 ATTCCGAACTTGTTGAGTGGTCCAAGTTCATGAGATATGTGGC
1 A-TCCGAGCTCGTTGAGTGGTCCAAGTTCATGAGATATATGAC
25264095 ATCCGAGCTCGTTGAGTGGTCC
1 ATCCGAGCTCGTTGAGTGGTCC
25264117 GTGTTCATTG
Statistics
Matches: 54, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
42 20 0.37
43 34 0.63
ACGTcount: A:0.21, C:0.18, G:0.28, T:0.33
Consensus pattern (42 bp):
ATCCGAGCTCGTTGAGTGGTCCAAGTTCATGAGATATATGAC
Found at i:25273606 original size:39 final size:39
Alignment explanation
Indices: 25273552--25273730 Score: 285
Period size: 39 Copynumber: 4.7 Consensus size: 39
25273542 GAATGTTCGA
25273552 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
25273591 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGC--A-T
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
* *
25273627 -TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
25273665 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
25273704 GTGATATCCGGGTTAAGTCCCGAAGGC
1 GTGATATCCGGGCTAAG-CCCGAAGGC
25273731 CTTTGTGCGG
Statistics
Matches: 130, Mismatches: 5, Indels: 9
0.90 0.03 0.06
Matches are distributed among these distances:
35 33 0.25
36 1 0.01
37 1 0.01
38 1 0.01
39 85 0.65
40 9 0.07
ACGTcount: A:0.26, C:0.21, G:0.30, T:0.23
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
Found at i:25273623 original size:30 final size:30
Alignment explanation
Indices: 25273587--25273658 Score: 99
Period size: 35 Copynumber: 2.2 Consensus size: 30
25273577 CAATTGTGCA
25273587 AATTGTGATATCCGGGCTAAGCCCGAAGGC
1 AATTGTGATATCCGGGCTAAGCCCGAAGGC
25273617 AATTGTGCATTGATATCCGGGCTAAGCCCGAAGGC
1 AA-T-TG---TGATATCCGGGCTAAGCCCGAAGGC
25273652 AATTGTG
1 AATTGTG
25273659 CGAGTTATGA
Statistics
Matches: 37, Mismatches: 0, Indels: 10
0.79 0.00 0.21
Matches are distributed among these distances:
30 4 0.11
31 1 0.03
32 2 0.05
33 2 0.05
34 1 0.03
35 27 0.73
ACGTcount: A:0.26, C:0.21, G:0.29, T:0.24
Consensus pattern (30 bp):
AATTGTGATATCCGGGCTAAGCCCGAAGGC
Found at i:25273641 original size:74 final size:77
Alignment explanation
Indices: 25273552--25273730 Score: 283
Period size: 74 Copynumber: 2.3 Consensus size: 77
25273542 GAATGTTCGA
*
25273552 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAGCCCGAAGGC
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTATGATATCCGGGCTAAGCCCGAAGGC
25273617 AATTGTGC-A-T
66 AATTGTGCAATT
* *
25273627 -TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGC
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTATGATATCCGGGCTAAGCCCGAAGGC
25273691 AATTGTGCAAATT
66 AATTGTGC-AATT
*
25273704 GTGATATCCGGGTTAAGTCCCGAAGGC
1 GTGATATCCGGGCTAAG-CCCGAAGGC
25273731 CTTTGTGCGG
Statistics
Matches: 95, Mismatches: 4, Indels: 6
0.90 0.04 0.06
Matches are distributed among these distances:
74 69 0.73
76 1 0.01
77 1 0.01
78 15 0.16
79 9 0.09
ACGTcount: A:0.26, C:0.21, G:0.30, T:0.23
Consensus pattern (77 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTATGATATCCGGGCTAAGCCCGAAGGC
AATTGTGCAATT
Found at i:25281586 original size:28 final size:28
Alignment explanation
Indices: 25281517--25281617 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
25281507 GACAAGATTG
* * * *
25281517 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
25281547 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
25281575 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
25281604 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
25281618 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:25284797 original size:39 final size:39
Alignment explanation
Indices: 25284743--25284886 Score: 243
Period size: 39 Copynumber: 3.7 Consensus size: 39
25284733 GAATGTTCGA
25284743 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
* *
25284782 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
25284821 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
25284860 GTGATATCCGGGTTAAGTCCCGAAGGC
1 GTGATATCCGGGCTAAG-CCCGAAGGC
25284887 CTTTGTGCGG
Statistics
Matches: 97, Mismatches: 7, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 88 0.91
40 9 0.09
ACGTcount: A:0.26, C:0.21, G:0.30, T:0.23
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
Found at i:25284833 original size:78 final size:79
Alignment explanation
Indices: 25284744--25284926 Score: 278
Period size: 78 Copynumber: 2.3 Consensus size: 79
25284734 AATGTTCGAG
25284744 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAG-CCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAGTCCCGAAGGC
25284808 AATTGTGCGAGTTA
66 AATTGTGCGAGTTA
*
25284822 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGTTAAGTCCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAGTCCCGAAGGC
** *
25284887 CTTTGTGCGGGTTA
66 AATTGTGCGAGTTA
** * *
25284901 CCATAACCGGGCTATGTCCCGAAGGC
1 TGATATCCGGGCTAAG-CCCGAAGGC
25284927 GTTTGAACGA
Statistics
Matches: 95, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
78 54 0.57
79 32 0.34
80 9 0.09
ACGTcount: A:0.25, C:0.22, G:0.30, T:0.23
Consensus pattern (79 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAGTCCCGAAGGC
AATTGTGCGAGTTA
Found at i:25293242 original size:23 final size:23
Alignment explanation
Indices: 25293215--25293260 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
25293205 TGACTATGTG
25293215 ATTTTAGTAACATTTATGTTATC
1 ATTTTAGTAACATTTATGTTATC
25293238 ATTTTAGTAACATTTATGTTATC
1 ATTTTAGTAACATTTATGTTATC
25293261 TCACATTATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.30, C:0.09, G:0.09, T:0.52
Consensus pattern (23 bp):
ATTTTAGTAACATTTATGTTATC
Found at i:25293973 original size:13 final size:13
Alignment explanation
Indices: 25293955--25294007 Score: 88
Period size: 13 Copynumber: 4.1 Consensus size: 13
25293945 CTACACGGCC
25293955 TAGCACACGGGCG
1 TAGCACACGGGCG
*
25293968 TAGCACACAGGCG
1 TAGCACACGGGCG
*
25293981 TAGCACACGGACG
1 TAGCACACGGGCG
25293994 TAGCACACGGGCG
1 TAGCACACGGGCG
25294007 T
1 T
25294008 GTGACTTGGC
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
13 36 1.00
ACGTcount: A:0.26, C:0.30, G:0.34, T:0.09
Consensus pattern (13 bp):
TAGCACACGGGCG
Found at i:25294007 original size:26 final size:25
Alignment explanation
Indices: 25293947--25294003 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 25
25293937 TGAATTTCCT
* *
25293947 ACACGGCCTAGCACACGGGCGTAGC
1 ACACGGCGTAGCACACGGACGTAGC
25293972 ACACAGGCGTAGCACACGGACGTAGC
1 ACAC-GGCGTAGCACACGGACGTAGC
25293998 ACACGG
1 ACACGG
25294004 GCGTGTGACT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
25 6 0.21
26 23 0.79
ACGTcount: A:0.28, C:0.33, G:0.32, T:0.07
Consensus pattern (25 bp):
ACACGGCGTAGCACACGGACGTAGC
Found at i:25297021 original size:15 final size:15
Alignment explanation
Indices: 25296989--25297031 Score: 54
Period size: 15 Copynumber: 3.0 Consensus size: 15
25296979 AAAATGCCTT
*
25296989 AAACCCTAAACC--A
1 AAACCCTAACCCTAA
*
25297002 AAACCTTAACCCTAA
1 AAACCCTAACCCTAA
25297017 AAACCCTAACCCTAA
1 AAACCCTAACCCTAA
25297032 GAGAGAGATT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
13 10 0.40
15 15 0.60
ACGTcount: A:0.49, C:0.37, G:0.00, T:0.14
Consensus pattern (15 bp):
AAACCCTAACCCTAA
Found at i:25305715 original size:19 final size:19
Alignment explanation
Indices: 25305691--25305729 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
25305681 TAAAGTTATT
25305691 ATAATTAAAACAAAACATA
1 ATAATTAAAACAAAACATA
25305710 ATAATTAAAACAAAACATA
1 ATAATTAAAACAAAACATA
25305729 A
1 A
25305730 AACTTTGGCC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.69, C:0.10, G:0.00, T:0.21
Consensus pattern (19 bp):
ATAATTAAAACAAAACATA
Found at i:25312982 original size:33 final size:34
Alignment explanation
Indices: 25312907--25313010 Score: 91
Period size: 33 Copynumber: 3.3 Consensus size: 34
25312897 ACATGTCTGC
* * *
25312907 ACTG-TACTGATACTGAATTGGGCT-TAGGCCCAC
1 ACTGTTACTGATACTGAA-TAGGCTCAAGGCCCAG
25312940 ACTGTTACTG-TA-T--A-AGGCT-AAGGCCCAG
1 ACTGTTACTGATACTGAATAGGCTCAAGGCCCAG
* *
25312968 ACTG-TACTGATACTGAATAGGGTCCAGGCCCAG
1 ACTGTTACTGATACTGAATAGGCTCAAGGCCCAG
25313001 ACTGTTACTG
1 ACTGTTACTG
25313011 CATGCGTTGT
Statistics
Matches: 58, Mismatches: 5, Indels: 15
0.74 0.06 0.19
Matches are distributed among these distances:
27 5 0.09
28 17 0.29
29 1 0.02
30 1 0.02
31 1 0.02
32 5 0.09
33 18 0.31
34 10 0.17
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (34 bp):
ACTGTTACTGATACTGAATAGGCTCAAGGCCCAG
Found at i:25314043 original size:24 final size:22
Alignment explanation
Indices: 25314011--25314057 Score: 58
Period size: 22 Copynumber: 2.0 Consensus size: 22
25314001 TCGCATGGCT
*
25314011 ATACATATTTACATCATCAAAAAG
1 ATACATATTTA-A-CAACAAAAAG
*
25314035 ATACTTATTTAACAACAAAAAG
1 ATACATATTTAACAACAAAAAG
25314057 A
1 A
25314058 CAAGCATATA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
22 10 0.48
23 1 0.05
24 10 0.48
ACGTcount: A:0.53, C:0.15, G:0.04, T:0.28
Consensus pattern (22 bp):
ATACATATTTAACAACAAAAAG
Found at i:25314795 original size:39 final size:39
Alignment explanation
Indices: 25314740--25314963 Score: 358
Period size: 39 Copynumber: 5.7 Consensus size: 39
25314730 TTCCAACCCA
* *
25314740 AATGCCTTCGGAACTTAGCCCGGATATAACATCAGCACG
1 AATGCCTTCGGGACTTAGCCCGGATATAATATCAGCACG
* * *
25314779 AATGCCTACGGGACTTAGCTCGAATATAATATCAGCACG
1 AATGCCTTCGGGACTTAGCCCGGATATAATATCAGCACG
*
25314818 AATGCCTTCGGGACTTAGCCCGGATATAATACCAGCACG
1 AATGCCTTCGGGACTTAGCCCGGATATAATATCAGCACG
*
25314857 AATGCCTTCGGGACTTAACCCGGATATAATATCAGCACG
1 AATGCCTTCGGGACTTAGCCCGGATATAATATCAGCACG
* *
25314896 AATGCCTTTGGGACTTAACCCGGATATAATATCAGCACG
1 AATGCCTTCGGGACTTAGCCCGGATATAATATCAGCACG
*
25314935 AATGCCTTTGGGACTTAGCCCGGATATAA
1 AATGCCTTCGGGACTTAGCCCGGATATAA
25314964 ATCTCACACA
Statistics
Matches: 172, Mismatches: 13, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 172 1.00
ACGTcount: A:0.30, C:0.25, G:0.21, T:0.23
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAGCCCGGATATAATATCAGCACG
Found at i:25322843 original size:39 final size:39
Alignment explanation
Indices: 25322788--25323011 Score: 331
Period size: 39 Copynumber: 5.7 Consensus size: 39
25322778 TTCCAACCCA
* *
25322788 AATGCCTTCGGAACTTAGCCCGGATATAACATCAGCACG
1 AATGCCTTCGGGACTTAGCCCGGATATAATATCAGCACG
* * *
25322827 AATGCCTACTGGACTTAGCCCGGATATAATATCAGCACA
1 AATGCCTTCGGGACTTAGCCCGGATATAATATCAGCACG
* *
25322866 AATGCCTTCGGGACTTAGCCTGGATATAATACCAGCACG
1 AATGCCTTCGGGACTTAGCCCGGATATAATATCAGCACG
* * *
25322905 AATGCCTTCGGGACTTAACCCGGATATAGTATCAGCAGG
1 AATGCCTTCGGGACTTAGCCCGGATATAATATCAGCACG
* *
25322944 AATGCCTTCGGGACTTAACCCGGATATAATATCAGCATG
1 AATGCCTTCGGGACTTAGCCCGGATATAATATCAGCACG
*
25322983 AATGCCTCCGGGACTTAGCCCGGATATAA
1 AATGCCTTCGGGACTTAGCCCGGATATAA
25323012 ATCTCACACA
Statistics
Matches: 166, Mismatches: 19, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 166 1.00
ACGTcount: A:0.30, C:0.25, G:0.22, T:0.23
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAGCCCGGATATAATATCAGCACG
Found at i:25331808 original size:29 final size:29
Alignment explanation
Indices: 25331774--25331905 Score: 149
Period size: 29 Copynumber: 4.6 Consensus size: 29
25331764 TACTCGATTT
** * *
25331774 CGCACACTTAGTGCCATGCGATTT-AAGCC
1 CGCACACTTAGTGCCAT-ATATTTCCAGCA
* *** * *
25331803 CGCACACATAGTGCCATACCCTTCGAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
25331832 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
25331861 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
25331890 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
25331906 ATCTCGTCAC
Statistics
Matches: 87, Mismatches: 15, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
28 2 0.02
29 85 0.98
ACGTcount: A:0.26, C:0.33, G:0.17, T:0.25
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:25339148 original size:29 final size:29
Alignment explanation
Indices: 25339114--25339245 Score: 149
Period size: 29 Copynumber: 4.6 Consensus size: 29
25339104 TACTCGATTT
** * *
25339114 CGCACACTTAGTGCCATGCGATTT-AAGCC
1 CGCACACTTAGTGCCAT-ATATTTCCAGCA
* *** * *
25339143 CGCACACATAGTGCCATACCCTTCGAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
25339172 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
25339201 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
25339230 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
25339246 ATCTCGTCAC
Statistics
Matches: 87, Mismatches: 15, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
28 2 0.02
29 85 0.98
ACGTcount: A:0.26, C:0.33, G:0.17, T:0.25
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:25347101 original size:44 final size:43
Alignment explanation
Indices: 25347052--25347206 Score: 142
Period size: 43 Copynumber: 3.7 Consensus size: 43
25347042 TGTGTTATTG
*
25347052 TGTAAGACCATGTCAGGGACGTTGGCATC-AAATTATGATTTACA
1 TGTAAGACCATGTCTGGGACGTTGGCATCGAAATT-TGATTT-CA
* * * * **
25347096 TGTAAGACAACGTCTGGGATGTTGGCATCGTAA-TTGATTTTTG
1 TGTAAGACCATGTCTGGGACGTTGGCATCGAAATTTGA-TTTCA
* * *
25347139 TGTTAGACCCTGTCTGGGACAG-TGGCATCGATATTTGATTTCA
1 TGTAAGACCATGTCTGGGAC-GTTGGCATCGAAATTTGATTTCA
25347182 TGTAAGA-C--GTCTGGGACGTTGGCAT
1 TGTAAGACCATGTCTGGGACGTTGGCAT
25347207 TGTACGAGCT
Statistics
Matches: 89, Mismatches: 17, Indels: 14
0.74 0.14 0.12
Matches are distributed among these distances:
39 1 0.01
40 15 0.17
42 1 0.01
43 36 0.40
44 34 0.38
45 2 0.02
ACGTcount: A:0.25, C:0.15, G:0.27, T:0.33
Consensus pattern (43 bp):
TGTAAGACCATGTCTGGGACGTTGGCATCGAAATTTGATTTCA
Found at i:25348744 original size:26 final size:26
Alignment explanation
Indices: 25348691--25348749 Score: 75
Period size: 26 Copynumber: 2.3 Consensus size: 26
25348681 TACCCCAAAC
* * *
25348691 AAAATTTTTATGATTTTACCATTGGT
1 AAAATTTTGATGATTTTACCACTAGT
25348717 AAAATTTTGATGATTTTATCC-CTAGT
1 AAAATTTTGATGATTTTA-CCACTAGT
25348743 AAAATTT
1 AAAATTT
25348750 CAAGAAAATA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
26 27 0.93
27 2 0.07
ACGTcount: A:0.34, C:0.08, G:0.10, T:0.47
Consensus pattern (26 bp):
AAAATTTTGATGATTTTACCACTAGT
Found at i:25354659 original size:40 final size:39
Alignment explanation
Indices: 25354509--25354661 Score: 243
Period size: 39 Copynumber: 3.9 Consensus size: 39
25354499 GAATGTGCGA
* *
25354509 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
25354548 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
*
25354587 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
* **
25354626 GTGATATCCGGGTTAAGTCCCGAAGGCCTTTGTGCG
1 GTGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCG
25354662 GGTTACCATA
Statistics
Matches: 106, Mismatches: 7, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
39 90 0.85
40 16 0.15
ACGTcount: A:0.24, C:0.21, G:0.31, T:0.24
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
Found at i:25354677 original size:40 final size:39
Alignment explanation
Indices: 25354510--25354692 Score: 240
Period size: 39 Copynumber: 4.6 Consensus size: 39
25354500 AATGTGCGAG
* * *
25354510 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
25354549 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
*
25354588 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* ** *
25354627 TGATATCCGGGTTAAGTCCCGAAGGCCTTTGTGCGGGTTA
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTA
** * *
25354667 CCATAACCGGGCTATGTCCCGAAGGC
1 TGATATCCGGGCTAAG-CCCGAAGGC
25354693 GTTTGAACGA
Statistics
Matches: 129, Mismatches: 14, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
39 89 0.69
40 40 0.31
ACGTcount: A:0.23, C:0.22, G:0.31, T:0.23
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
Found at i:25361298 original size:40 final size:40
Alignment explanation
Indices: 25361219--25361395 Score: 175
Period size: 40 Copynumber: 4.5 Consensus size: 40
25361209 CGGATGATAA
* * * * *
25361219 CCGGACTAAGATCCGAAGGCATTCGTGCGAGTTG-CTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATTATAT
* * * *
25361259 CCGGGCTATGTCCTGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
*
25361299 CCGGGCTAAGACCCGAAGGCATTTGTG-TGAGTTG-CTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCT-AG-TGATTATAT
* *
25361339 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
25361379 CC-GGCTAA-ATCCCGAAG
1 CCGGGCTAAGA-CCCGAAG
25361396 ATACTTGGGT
Statistics
Matches: 114, Mismatches: 17, Indels: 13
0.79 0.12 0.09
Matches are distributed among these distances:
38 1 0.01
39 17 0.15
40 94 0.82
41 2 0.02
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
Found at i:25361357 original size:80 final size:80
Alignment explanation
Indices: 25361219--25361395 Score: 241
Period size: 80 Copynumber: 2.2 Consensus size: 80
25361209 CGGATGATAA
* * * * *
25361219 CCGGACTAAGATCCGAAGGCATTCGTGCGAGTTGCTATATCCGGGCTATGTCCTGAAGGCATTTA
1 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCTATATCCGGGCTAAGACCCGAAGGCATTTA
*
25361284 TGCTAGTGATTATAT
66 TGCGAGTGATTATAT
* * *
25361299 CCGGGCTAAGACCCGAAGGCATTTGTGTGAGTTGCTATATCCGGGCTAAGACCCGAAGGCATTTG
1 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCTATATCCGGGCTAAGACCCGAAGGCATTTA
*
25361364 TGCGAGTTATTATAT
66 TGCGAGTGATTATAT
25361379 CC-GGCTAA-ATCCCGAAG
1 CCGGGCTAAGA-CCCGAAG
25361396 ATACTTGGGT
Statistics
Matches: 86, Mismatches: 10, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
78 1 0.01
79 13 0.15
80 72 0.84
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.27
Consensus pattern (80 bp):
CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCTATATCCGGGCTAAGACCCGAAGGCATTTA
TGCGAGTGATTATAT
Found at i:25361663 original size:22 final size:22
Alignment explanation
Indices: 25361623--25361664 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
25361613 GAATGTGCAT
*
25361623 ATATGAAGTTATTCATTTAGCC
1 ATATGAAGTTATACATTTAGCC
25361645 ATATGAATGTTATAC-TTTAG
1 ATATGAA-GTTATACATTTAG
25361665 TCAAAACTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 12 0.67
23 6 0.33
ACGTcount: A:0.33, C:0.10, G:0.14, T:0.43
Consensus pattern (22 bp):
ATATGAAGTTATACATTTAGCC
Found at i:25372464 original size:44 final size:44
Alignment explanation
Indices: 25372401--25372518 Score: 155
Period size: 44 Copynumber: 2.7 Consensus size: 44
25372391 ATGTGTTATT
*
25372401 GTGTAAGACCACGTTTGGGACGTTGGCATCAACTTATGATTTAC
1 GTGTAAGACCACGTCTGGGACGTTGGCATCAACTTATGATTTAC
* * ** *
25372445 GTGTAAGACCACATCTGGGACGTTGGGATTGACTTATGATTTAT
1 GTGTAAGACCACGTCTGGGACGTTGGCATCAACTTATGATTTAC
* * *
25372489 GTGGAAGACAACGTCTGGGATGTTGGCATC
1 GTGTAAGACCACGTCTGGGACGTTGGCATC
25372519 GTATTTGTTT
Statistics
Matches: 62, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
44 62 1.00
ACGTcount: A:0.25, C:0.16, G:0.29, T:0.31
Consensus pattern (44 bp):
GTGTAAGACCACGTCTGGGACGTTGGCATCAACTTATGATTTAC
Found at i:25377061 original size:46 final size:46
Alignment explanation
Indices: 25376898--25377070 Score: 167
Period size: 46 Copynumber: 3.7 Consensus size: 46
25376888 AACCCGCCCC
* * * * *
25376898 TAAGTGAACTCGGACTCAAATCAATGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
* * * *
25376944 TAATTGAACTCGGACTCAACTCAATGAGTTCGGATGCCTAGTT-ACATTTCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCA-TCCA
*
25376995 -CA---AACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
25377037 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
25377071 TGCTCAACCA
Statistics
Matches: 104, Mismatches: 12, Indels: 22
0.75 0.09 0.16
Matches are distributed among these distances:
42 5 0.05
43 4 0.04
44 1 0.01
46 58 0.56
47 27 0.26
49 1 0.01
50 3 0.03
51 5 0.05
ACGTcount: A:0.30, C:0.26, G:0.20, T:0.24
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:25377066 original size:93 final size:93
Alignment explanation
Indices: 25376904--25377073 Score: 277
Period size: 93 Copynumber: 1.8 Consensus size: 93
25376894 CCCCTAAGTG
* * * * *
25376904 AACTCGGACTCAAATCAATGAGCTCGGGCGTTCGCATCCATAATTGAACTCGGACTCAACTCAAT
1 AACTCGGACTCAAATCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
25376969 GAGTTCGGATGCCTAGTTACATTTCACA
66 GAGTTCGGATGCCTAGTTACATTTCACA
* *
25376997 AACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 AACTCGGACTCAAATCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
25377062 GAGTTCGGATGC
66 GAGTTCGGATGC
25377074 TCAACCATCC
Statistics
Matches: 70, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.24
Consensus pattern (93 bp):
AACTCGGACTCAAATCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
GAGTTCGGATGCCTAGTTACATTTCACA
Found at i:25377525 original size:30 final size:30
Alignment explanation
Indices: 25377491--25377550 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
25377481 ATTTAATACG
25377491 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * * *
25377521 AACTTTTGCATAATTACACTTTTTCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
25377551 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.38
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:25399265 original size:18 final size:18
Alignment explanation
Indices: 25399242--25399278 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
25399232 GTTGGGTCGA
25399242 AATGGG-TCGTGTGGGCCC
1 AATGGGCTCGTG-GGGCCC
25399260 AATGGGCTCGTGGGGCCC
1 AATGGGCTCGTGGGGCCC
25399278 A
1 A
25399279 TACAGATTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 13 0.72
19 5 0.28
ACGTcount: A:0.14, C:0.24, G:0.43, T:0.19
Consensus pattern (18 bp):
AATGGGCTCGTGGGGCCC
Found at i:25401807 original size:42 final size:43
Alignment explanation
Indices: 25401761--25401851 Score: 105
Period size: 42 Copynumber: 2.2 Consensus size: 43
25401751 TGTGATAGGA
* * *
25401761 ATACACAAAT-GTGTGGCTAAGAGACACGCCCGTGTGACTGAG
1 ATACACAAATCATGTGGCAAAGAGACACGCCCGTGTAACTGAG
* * *
25401803 ATACAC-AATCATGTGGCAAAGGGACACGTCCGTGTAACTGGG
1 ATACACAAATCATGTGGCAAAGAGACACGCCCGTGTAACTGAG
*
25401845 GTACACA
1 ATACACA
25401852 GCGTTGTGGC
Statistics
Matches: 40, Mismatches: 7, Indels: 3
0.80 0.14 0.06
Matches are distributed among these distances:
41 3 0.08
42 37 0.93
ACGTcount: A:0.32, C:0.22, G:0.27, T:0.19
Consensus pattern (43 bp):
ATACACAAATCATGTGGCAAAGAGACACGCCCGTGTAACTGAG
Found at i:25404687 original size:33 final size:33
Alignment explanation
Indices: 25404649--25404716 Score: 127
Period size: 33 Copynumber: 2.1 Consensus size: 33
25404639 TTTACATGTT
*
25404649 TGTTTTTAAGAAAGAAAGATTATAGGTACCATG
1 TGTTTTGAAGAAAGAAAGATTATAGGTACCATG
25404682 TGTTTTGAAGAAAGAAAGATTATAGGTACCATG
1 TGTTTTGAAGAAAGAAAGATTATAGGTACCATG
25404715 TG
1 TG
25404717 ATATGAATTA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.38, C:0.06, G:0.24, T:0.32
Consensus pattern (33 bp):
TGTTTTGAAGAAAGAAAGATTATAGGTACCATG
Found at i:25406318 original size:68 final size:70
Alignment explanation
Indices: 25406246--25406443 Score: 276
Period size: 71 Copynumber: 2.8 Consensus size: 70
25406236 ACACCCTGTA
* * * *
25406246 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
25406308 ATAAAT
65 ATAAAT
*
25406314 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
25406379 ATAAAT
65 ATAAAT
* * *
25406385 GTAGCTGGGTCGCATGCGTGATTCCAAGTGACGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGA-AGACACCATGTAGACAAGAGAGCTACG
25406444 AGACAAATCG
Statistics
Matches: 118, Mismatches: 7, Indels: 7
0.89 0.05 0.05
Matches are distributed among these distances:
68 24 0.20
69 3 0.03
70 1 0.01
71 90 0.76
ACGTcount: A:0.33, C:0.18, G:0.29, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:25406369 original size:71 final size:71
Alignment explanation
Indices: 25406280--25406443 Score: 310
Period size: 71 Copynumber: 2.3 Consensus size: 71
25406270 GAGATGTATC
25406280 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
25406345 AGGACA
66 AGGACA
*
25406351 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTGGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
*
25406416 CGGACA
66 AGGACA
25406422 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
25406444 AGACAAATCG
Statistics
Matches: 91, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
71 91 1.00
ACGTcount: A:0.34, C:0.18, G:0.29, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:25408396 original size:14 final size:15
Alignment explanation
Indices: 25408364--25408398 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
25408354 AACATAACAG
25408364 TTGCTAACACACATT
1 TTGCTAACACACATT
*
25408379 TTGCTACCACAC-TT
1 TTGCTAACACACATT
25408393 TTGCTA
1 TTGCTA
25408399 TGCACTCTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 8 0.42
15 11 0.58
ACGTcount: A:0.26, C:0.29, G:0.09, T:0.37
Consensus pattern (15 bp):
TTGCTAACACACATT
Found at i:25412455 original size:4 final size:4
Alignment explanation
Indices: 25412446--25412471 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
25412436 ATTACCTGAG
25412446 AATT AATT AATT AATT AATT AATT AA
1 AATT AATT AATT AATT AATT AATT AA
25412472 AGTTTGAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (4 bp):
AATT
Found at i:25414762 original size:28 final size:28
Alignment explanation
Indices: 25414730--25414784 Score: 110
Period size: 28 Copynumber: 2.0 Consensus size: 28
25414720 CGTAGATCAC
25414730 GAAATTACCCCTAAAGAGCAAAATTACT
1 GAAATTACCCCTAAAGAGCAAAATTACT
25414758 GAAATTACCCCTAAAGAGCAAAATTAC
1 GAAATTACCCCTAAAGAGCAAAATTAC
25414785 CAATATACCC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.47, C:0.22, G:0.11, T:0.20
Consensus pattern (28 bp):
GAAATTACCCCTAAAGAGCAAAATTACT
Found at i:25417659 original size:24 final size:23
Alignment explanation
Indices: 25417623--25417675 Score: 54
Period size: 24 Copynumber: 2.3 Consensus size: 23
25417613 TTGGTGCCCT
*
25417623 TGATATTCATGCTATATACA-CCC
1 TGATAATCATGCT-TATACATCCC
* *
25417646 ATGATAATCGTGCTTATGCATCCC
1 -TGATAATCATGCTTATACATCCC
25417670 TGATAA
1 TGATAA
25417676 CTGCACCTAT
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
23 11 0.44
24 14 0.56
ACGTcount: A:0.30, C:0.23, G:0.13, T:0.34
Consensus pattern (23 bp):
TGATAATCATGCTTATACATCCC
Found at i:25422273 original size:35 final size:35
Alignment explanation
Indices: 25422208--25422387 Score: 153
Period size: 35 Copynumber: 5.1 Consensus size: 35
25422198 TACTTACTTG
* * * *
25422208 TATGGCCAAATACACATGGTTCATTATATCATCACA
1 TATGGCCGAATATACA-AGTTCAATATATCATCACA
* **
25422244 TATGGCCGAATATACAAGTACAATATATCATCATG
1 TATGGCCGAATATACAAGTTCAATATATCATCACA
* * *
25422279 TATGACCGAATATACAAGTTCAATAAAACATCACA
1 TATGGCCGAATATACAAGTTCAATATATCATCACA
* *** * * * *
25422314 TGTATTCGATTATTCAAGTTTAATATAACATCACA
1 TATGGCCGAATATACAAGTTCAATATATCATCACA
* * * *
25422349 TGTGGCCAAACATACAAGTTCAATACATCATCACA
1 TATGGCCGAATATACAAGTTCAATATATCATCACA
25422384 TATG
1 TATG
25422388 TACATACCTA
Statistics
Matches: 112, Mismatches: 32, Indels: 1
0.77 0.22 0.01
Matches are distributed among these distances:
35 98 0.88
36 14 0.12
ACGTcount: A:0.40, C:0.19, G:0.11, T:0.29
Consensus pattern (35 bp):
TATGGCCGAATATACAAGTTCAATATATCATCACA
Found at i:25429915 original size:70 final size:70
Alignment explanation
Indices: 25429823--25430002 Score: 180
Period size: 70 Copynumber: 2.6 Consensus size: 70
25429813 TACTTACTTG
* * * * * * *
25429823 TATGGCCAAATACACATGGTTCATTATATCATCACATATGGTCGAATATACAAGTATAATCTATC
1 TATGACCAAATATACA-AGTTCAATAAATCATCACATATGGTCGAATATACAAGTATAATATAAC
*
25429888 ATCATG
65 ATCATA
** * * ** * *
25429894 TATGACTGAATATACAAGTTCAATAAAACATCACATGTATTCGAATATTCAAGTTTAATATAACA
1 TATGACCAAATATACAAGTTCAATAAATCATCACATATGGTCGAATATACAAGTATAATATAACA
25429959 TCATA
66 TCATA
* * *
25429964 TGTGCCCAAATATACAAGTTCAATACATCATCACATATG
1 TATGACCAAATATACAAGTTCAATAAATCATCACATATG
25430003 TACATACCTA
Statistics
Matches: 85, Mismatches: 24, Indels: 1
0.77 0.22 0.01
Matches are distributed among these distances:
70 73 0.86
71 12 0.14
ACGTcount: A:0.40, C:0.18, G:0.11, T:0.32
Consensus pattern (70 bp):
TATGACCAAATATACAAGTTCAATAAATCATCACATATGGTCGAATATACAAGTATAATATAACA
TCATA
Done.