Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr02 99090824
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 99090824
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 317 characters in sequence are not A, C, G, or T
File 85 of 318
Found at i:25429926 original size:35 final size:34
Alignment explanation
Indices: 25429865--25429988 Score: 90
Period size: 35 Copynumber: 3.6 Consensus size: 34
25429855 CACATATGGT
** *
25429865 CGAATATACAAGTAT-AATCTATCATCATGTATGA
1 CGAATATACAAGT-TCAATAAAACATCATGTATGA
*
25429899 CTGAATATACAAGTTCAATAAAACATCACATGTAT-T
1 C-GAATATACAAGTTCAATAAAACAT--CATGTATGA
* * * * * *
25429935 CGAATATTCAAGTTTAATATAACATCATATGTGCC
1 CGAATATACAAGTTCAATAAAACATCATGTATG-A
*
25429970 CAAATATACAAGTTCAATA
1 CGAATATACAAGTTCAATA
25429989 CATCATCACA
Statistics
Matches: 71, Mismatches: 13, Indels: 11
0.75 0.14 0.12
Matches are distributed among these distances:
33 5 0.07
34 2 0.03
35 56 0.79
36 1 0.01
37 7 0.10
ACGTcount: A:0.43, C:0.16, G:0.10, T:0.31
Consensus pattern (34 bp):
CGAATATACAAGTTCAATAAAACATCATGTATGA
Found at i:25429996 original size:35 final size:35
Alignment explanation
Indices: 25429902--25429999 Score: 106
Period size: 35 Copynumber: 2.8 Consensus size: 35
25429892 TGTATGACTG
** *
25429902 AATATACAAGTTCAATAAAACATCACATGTATTCG
1 AATATACAAGTTCAATAAAACATCACATGTACCCA
* * * * *
25429937 AATATTCAAGTTTAATATAACATCATATGTGCCCA
1 AATATACAAGTTCAATAAAACATCACATGTACCCA
* *
25429972 AATATACAAGTTCAATACATCATCACAT
1 AATATACAAGTTCAATAAAACATCACAT
25430000 ATGTACATAC
Statistics
Matches: 50, Mismatches: 13, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
35 50 1.00
ACGTcount: A:0.44, C:0.18, G:0.07, T:0.31
Consensus pattern (35 bp):
AATATACAAGTTCAATAAAACATCACATGTACCCA
Found at i:25439145 original size:24 final size:24
Alignment explanation
Indices: 25439105--25439190 Score: 68
Period size: 28 Copynumber: 3.5 Consensus size: 24
25439095 CTGAATTTTT
*
25439105 AAATTTAAAAAAT-AAAAGGACTA
1 AAATTTTAAAAATAAAAAGGACTA
**
25439128 AAATTTTAAAAATAAAAATAAACATA
1 AAATTTTAAAAATAAAAA-GGAC-TA
* *
25439154 TTAAATTTTAAATATATAAAGGTAC-A
1 --AAATTTTAAAAATAAAAAGG-ACTA
25439180 AAATTTTAAAA
1 AAATTTTAAAA
25439191 TATATTTTAA
Statistics
Matches: 49, Mismatches: 8, Indels: 11
0.72 0.12 0.16
Matches are distributed among these distances:
23 12 0.24
24 14 0.29
25 2 0.04
26 3 0.06
28 18 0.37
ACGTcount: A:0.62, C:0.03, G:0.05, T:0.30
Consensus pattern (24 bp):
AAATTTTAAAAATAAAAAGGACTA
Found at i:25439719 original size:30 final size:30
Alignment explanation
Indices: 25439680--25439745 Score: 123
Period size: 30 Copynumber: 2.2 Consensus size: 30
25439670 TTCTTTTATC
*
25439680 TATAGTAAGGCATAAACACTTGATATCAAA
1 TATACTAAGGCATAAACACTTGATATCAAA
25439710 TATACTAAGGCATAAACACTTGATATCAAA
1 TATACTAAGGCATAAACACTTGATATCAAA
25439740 TATACT
1 TATACT
25439746 TAATAGGAAT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 35 1.00
ACGTcount: A:0.45, C:0.15, G:0.11, T:0.29
Consensus pattern (30 bp):
TATACTAAGGCATAAACACTTGATATCAAA
Found at i:25443144 original size:49 final size:47
Alignment explanation
Indices: 25443041--25443359 Score: 231
Period size: 49 Copynumber: 6.7 Consensus size: 47
25443031 GGATACGATA
* * * * *
25443041 CCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCA-CATCTAAG
1 CCGATGCCATGTCCCAGACA-GGTCTTACACTGACTC-CATCATCGAGG
* * *
25443089 TCGATGCCATGTCCTAGACAGGTCTAACACTGACTTCCATACATCGAGG
1 CCGATGCCATGTCCCAGACAGGTCTTACACTGAC-TCCAT-CATCGAGG
* * * *
25443138 CCGATGCCATGTCCCAGACAGGTTTTACACTGGCTCTCACTTATCTG-TG
1 CCGATGCCATGTCCCAGACAGGTCTTACACTGACTC-CA-TCATC-GAGG
* * * *
25443187 TCAATGCCATGTCCCAGACAGGTCTTACACTGAC-ACATC-TC-AAG
1 CCGATGCCATGTCCCAGACAGGTCTTACACTGACTCCATCATCGAGG
* * *
25443231 CCGATGCCATGTCCCAAACAGGTCTTACACT-AGCTTGCAT-ATCTCTAGG
1 CCGATGCCATGTCCCAGACAGGTCTTACACTGA-C-TCCATCA--TCGAGG
* * * * *
25443280 CCGATGCTATGTCCTAGATAGGTCTTACACTGGCTCTCATTTATCG-GTG
1 CCGATGCCATGTCCCAGACAGGTCTTACACTGACTC-CA-TCATCGAG-G
*
25443329 CCGATGCCATGTCCCAGACAGGTTTTACACT
1 CCGATGCCATGTCCCAGACAGGTCTTACACT
25443360 AGCATACACA
Statistics
Matches: 214, Mismatches: 38, Indels: 37
0.74 0.13 0.13
Matches are distributed among these distances:
43 1 0.00
44 30 0.14
45 2 0.01
46 4 0.02
47 16 0.07
48 24 0.11
49 133 0.62
50 3 0.01
51 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.28
Consensus pattern (47 bp):
CCGATGCCATGTCCCAGACAGGTCTTACACTGACTCCATCATCGAGG
Found at i:25443260 original size:93 final size:95
Alignment explanation
Indices: 25443041--25443359 Score: 288
Period size: 93 Copynumber: 3.3 Consensus size: 95
25443031 GGATACGATA
* * *
25443041 CCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCACATCTAAGTCGATGCCATGTCCTAG
1 CCGATGCCATGTCCCAAACA-GGTCTTACACTGGCTCTCACATCTAAGTCAATGCCATGTCCCAG
* *
25443106 ACAGGTCTAACACTGACTTCCATACATCGAGG
65 ACAGGTCTAACACTGAC-TACATACATCGAAG
* * **
25443138 CCGATGCCATGTCCCAGACAGGTTTTACACTGGCTCTCACTTATCTGTGTCAATGCCATGTCCCA
1 CCGATGCCATGTCCCAAACAGGTCTTACACTGGCTCTCAC--ATCTAAGTCAATGCCATGTCCCA
*
25443203 GACAGGTCTTACACTGAC-ACAT-C-TC-AAG
64 GACAGGTCTAACACTGACTACATACATCGAAG
* * * * * * *
25443231 CCGATGCCATGTCCCAAACAGGTCTTACACTAGCT-TGCATATCTCTAGGCCGATGCTATGTCCT
1 CCGATGCCATGTCCCAAACAGGTCTTACACTGGCTCT-CACA--TCTAAGTCAATGCCATGTCCC
* * * * ** **
25443295 AGATAGGTCTTACACTGGCTCTCATTTATCGGTG
63 AGACAGGTCTAACACTGACT-ACATACATCGAAG
* *
25443329 CCGATGCCATGTCCCAGACAGGTTTTACACT
1 CCGATGCCATGTCCCAAACAGGTCTTACACT
25443360 AGCATACACA
Statistics
Matches: 184, Mismatches: 28, Indels: 19
0.80 0.12 0.08
Matches are distributed among these distances:
91 1 0.01
92 1 0.01
93 68 0.37
94 2 0.01
95 4 0.02
96 22 0.12
97 20 0.11
98 66 0.36
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.28
Consensus pattern (95 bp):
CCGATGCCATGTCCCAAACAGGTCTTACACTGGCTCTCACATCTAAGTCAATGCCATGTCCCAGA
CAGGTCTAACACTGACTACATACATCGAAG
Found at i:25443346 original size:142 final size:143
Alignment explanation
Indices: 25443041--25443359 Score: 394
Period size: 142 Copynumber: 2.2 Consensus size: 143
25443031 GGATACGATA
* * * * * *
25443041 CCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCACATCTAAGTCGATGCCATGTCCTAG
1 CCGATGCCATGTCCCAGACA-GGTCTTACACTGG--CACACATCTAAGCCGATGCCATGTCCCAA
*
25443106 ACAGGTCTAACACTGACTTCCATACATCGAGGCCGATGCCATGTCCCAGACAGGTTTTACACTGG
63 ACAGGTCTAACACTGACTTCCATACATCGAGGCCGATGCCATGTCCCAGACAGGTCTTACACTGG
*
25443171 CTCTCACTTATCTGTG
128 CTCTCACTTATCGGTG
* *
25443187 TCAATGCCATGTCCCAGACAGGTCTTACACT-G-ACACATCTCAAGCCGATGCCATGTCCCAAAC
1 CCGATGCCATGTCCCAGACAGGTCTTACACTGGCACACATCT-AAGCCGATGCCATGTCCCAAAC
* * * * * *
25443250 AGGTCTTACACT-AGCTTGCATATC-TCTAGGCCGATGCTATGTCCTAGATAGGTCTTACACTGG
65 AGGTCTAACACTGA-CTTCCATA-CATCGAGGCCGATGCCATGTCCCAGACAGGTCTTACACTGG
*
25443313 CTCTCATTTATCGGTG
128 CTCTCACTTATCGGTG
*
25443329 CCGATGCCATGTCCCAGACAGGTTTTACACT
1 CCGATGCCATGTCCCAGACAGGTCTTACACT
25443360 AGCATACACA
Statistics
Matches: 150, Mismatches: 20, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
141 8 0.05
142 113 0.75
143 1 0.01
144 1 0.01
145 11 0.07
146 16 0.11
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.28
Consensus pattern (143 bp):
CCGATGCCATGTCCCAGACAGGTCTTACACTGGCACACATCTAAGCCGATGCCATGTCCCAAACA
GGTCTAACACTGACTTCCATACATCGAGGCCGATGCCATGTCCCAGACAGGTCTTACACTGGCTC
TCACTTATCGGTG
Found at i:25445134 original size:20 final size:21
Alignment explanation
Indices: 25445099--25445155 Score: 77
Period size: 20 Copynumber: 2.9 Consensus size: 21
25445089 TGATACGTAG
25445099 GATATGATAT--ACATGAT-T
1 GATATGATATGCACATGATAT
25445117 GATATGATATGCACATGATAT
1 GATATGATATGCACATGATAT
*
25445138 G-TATGAAATGCACATGAT
1 GATATGATATGCACATGAT
25445156 GTAATCATAA
Statistics
Matches: 35, Mismatches: 1, Indels: 4
0.88 0.03 0.10
Matches are distributed among these distances:
18 10 0.29
20 23 0.66
21 2 0.06
ACGTcount: A:0.39, C:0.09, G:0.19, T:0.33
Consensus pattern (21 bp):
GATATGATATGCACATGATAT
Found at i:25445285 original size:52 final size:50
Alignment explanation
Indices: 25445207--25445339 Score: 200
Period size: 52 Copynumber: 2.7 Consensus size: 50
25445197 GGAAGTGCAT
* *
25445207 AAGGGCTTATGCCTCAGTTTATTGAAAAGGGCTTATGCCCTAGTTTATTGAA
1 AAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTT-TGCCCTAGTTTA-TCAA
25445259 AAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTTGCCCTAGTTTATCAA
1 AAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTTGCCCTAGTTTATCAA
25445309 AAGGGCTT-TGCCCCAG-TTATT-AAAAGAGGCT
1 AAGGGCTTATGCCCCAGTTTATTGAAAAG-GGCT
25445340 AGGCCTCCAG
Statistics
Matches: 78, Mismatches: 2, Indels: 6
0.91 0.02 0.07
Matches are distributed among these distances:
47 5 0.06
48 9 0.12
49 8 0.10
50 11 0.14
51 12 0.15
52 33 0.42
ACGTcount: A:0.27, C:0.18, G:0.23, T:0.32
Consensus pattern (50 bp):
AAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTTGCCCTAGTTTATCAA
Found at i:25445302 original size:25 final size:26
Alignment explanation
Indices: 25445207--25445339 Score: 179
Period size: 26 Copynumber: 5.3 Consensus size: 26
25445197 GGAAGTGCAT
25445207 AAGGGCTTATG-CCTCAGTTTATTGAA
1 AAGGGCTTATGCCCT-AGTTTATTGAA
25445233 AAGGGCTTATGCCCTAGTTTATTGAA
1 AAGGGCTTATGCCCTAGTTTATTGAA
*
25445259 AAGGGCTTATGCCCCAGTTTATTGAA
1 AAGGGCTTATGCCCTAGTTTATTGAA
*
25445285 AAGGGCTT-TGCCCTAGTTTA-TCAA
1 AAGGGCTTATGCCCTAGTTTATTGAA
*
25445309 AAGGGCTT-TGCCCCAG-TTATT-AA
1 AAGGGCTTATGCCCTAGTTTATTGAA
25445332 AAGAGGCT
1 AAG-GGCT
25445340 AGGCCTCCAG
Statistics
Matches: 100, Mismatches: 4, Indels: 8
0.89 0.04 0.07
Matches are distributed among these distances:
23 8 0.08
24 23 0.23
25 11 0.11
26 55 0.55
27 3 0.03
ACGTcount: A:0.27, C:0.18, G:0.23, T:0.32
Consensus pattern (26 bp):
AAGGGCTTATGCCCTAGTTTATTGAA
Found at i:25457212 original size:40 final size:40
Alignment explanation
Indices: 25457168--25457295 Score: 220
Period size: 40 Copynumber: 3.2 Consensus size: 40
25457158 AACAACCAGC
25457168 ACGAATGCCTTCGGGACTTAACCCGGTTATAATAACCCGT
1 ACGAATGCCTTCGGGACTTAACCCGGTTATAATAACCCGT
* * *
25457208 ACGAATGCCTTCGGAACTTAACCCAGTTATAATAACCCGC
1 ACGAATGCCTTCGGGACTTAACCCGGTTATAATAACCCGT
*
25457248 ACGAATGCCTTCGGGACTTAACCTGGTTATAATAACCCGT
1 ACGAATGCCTTCGGGACTTAACCCGGTTATAATAACCCGT
25457288 ACGAATGC
1 ACGAATGC
25457296 TATGCACATA
Statistics
Matches: 81, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 81 1.00
ACGTcount: A:0.30, C:0.27, G:0.19, T:0.24
Consensus pattern (40 bp):
ACGAATGCCTTCGGGACTTAACCCGGTTATAATAACCCGT
Found at i:25463127 original size:9 final size:9
Alignment explanation
Indices: 25463113--25463151 Score: 55
Period size: 8 Copynumber: 4.6 Consensus size: 9
25463103 AGCATCTTTC
25463113 ATTTTTTTA
1 ATTTTTTTA
25463122 A-TTTTTTA
1 ATTTTTTTA
25463130 A-TTTTTTA
1 ATTTTTTTA
*
25463138 ATTTTTTTT
1 ATTTTTTTA
25463147 ATTTT
1 ATTTT
25463152 AAGTTACCTT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
8 16 0.57
9 12 0.43
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (9 bp):
ATTTTTTTA
Found at i:25463151 original size:8 final size:8
Alignment explanation
Indices: 25463115--25463144 Score: 60
Period size: 8 Copynumber: 3.8 Consensus size: 8
25463105 CATCTTTCAT
25463115 TTTTTTAA
1 TTTTTTAA
25463123 TTTTTTAA
1 TTTTTTAA
25463131 TTTTTTAA
1 TTTTTTAA
25463139 TTTTTT
1 TTTTTT
25463145 TTATTTTAAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (8 bp):
TTTTTTAA
Found at i:25468374 original size:48 final size:47
Alignment explanation
Indices: 25468228--25468437 Score: 156
Period size: 48 Copynumber: 4.4 Consensus size: 47
25468218 ATGTGTGTGT
* *
25468228 TGAGATCCTGTGTAAGACCATATCTAGGATATGACATCGGCATCGATA
1 TGAGATCCCGTGTAAGA-CATATCTAGGATATGGCATCGGCATCGATA
* * * * * * *
25468276 AGAGATCCCGTATACGACGACATTTAGGACATGGCATCGGTATC-AGTA
1 TGAGATCCCGTGTAAGAC-ATATCTAGGATATGGCATCGGCATCGA-TA
* * *
25468324 TGAGATCCCATGTAAGATCATATCTGGGATATGGCATTGGCATCGATA
1 TGAGATCCCGTGTAAGA-CATATCTAGGATATGGCATCGGCATCGATA
* * * * * * *
25468372 TGAGGTCTCGTATAAGACCA-AGTCTAGGACATGGCATCGACACCGTTA
1 TGAGATCCCGTGTAAGA-CATA-TCTAGGATATGGCATCGGCATCGATA
*
25468420 TGAGA-CTTCGTGTAAGAC
1 TGAGATC-CCGTGTAAGAC
25468438 CATAGCTGGG
Statistics
Matches: 124, Mismatches: 32, Indels: 13
0.73 0.19 0.08
Matches are distributed among these distances:
47 5 0.04
48 117 0.94
49 2 0.02
ACGTcount: A:0.30, C:0.20, G:0.25, T:0.26
Consensus pattern (47 bp):
TGAGATCCCGTGTAAGACATATCTAGGATATGGCATCGGCATCGATA
Found at i:25468434 original size:96 final size:96
Alignment explanation
Indices: 25468228--25468458 Score: 243
Period size: 96 Copynumber: 2.4 Consensus size: 96
25468218 ATGTGTGTGT
* * * *
25468228 TGAGATCCTGTGTAAGACCATATCTAGGATATGACATCGGCATCGATAAGAGATCCCGTATACGA
1 TGAGATCCCGTGTAAGACCATATCTGGGATATGGCATCGGCATCGATAAGAGATCCCGTATAAGA
* * **
25468293 CGACATTTAGGACATGGCATCGGTATCAGTA
66 CCACATCTAGGACATGGCATCGACATCAGTA
* * * * * *
25468324 TGAGATCCCATGTAAGATCATATCTGGGATATGGCATTGGCATCGATATGAGGTCTCGTATAAGA
1 TGAGATCCCGTGTAAGACCATATCTGGGATATGGCATCGGCATCGATAAGAGATCCCGTATAAGA
*
25468389 CCA-AGTCTAGGACATGGCATCGACA-CCGTTA
66 CCACA-TCTAGGACATGGCATCGACATCAG-TA
* * *
25468420 TGAGA-CTTCGTGTAAGACCATAGCTGGGCTAATGGCATC
1 TGAGATC-CCGTGTAAGACCATATCTGGGAT-ATGGCATC
25468459 AATGTGAGAT
Statistics
Matches: 110, Mismatches: 21, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
95 4 0.04
96 99 0.90
97 7 0.06
ACGTcount: A:0.29, C:0.20, G:0.25, T:0.26
Consensus pattern (96 bp):
TGAGATCCCGTGTAAGACCATATCTGGGATATGGCATCGGCATCGATAAGAGATCCCGTATAAGA
CCACATCTAGGACATGGCATCGACATCAGTA
Found at i:25490117 original size:15 final size:17
Alignment explanation
Indices: 25490099--25490130 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
25490089 TAGCATAATT
25490099 TACCAAA-TCA-ATTCA
1 TACCAAACTCACATTCA
25490114 TACCAAACTCACATTCA
1 TACCAAACTCACATTCA
25490131 CAAATATCAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 7 0.47
16 3 0.20
17 5 0.33
ACGTcount: A:0.44, C:0.31, G:0.00, T:0.25
Consensus pattern (17 bp):
TACCAAACTCACATTCA
Found at i:25495441 original size:40 final size:39
Alignment explanation
Indices: 25495346--25495550 Score: 214
Period size: 40 Copynumber: 5.2 Consensus size: 39
25495336 CGGAATACAA
* * *
25495346 CCGGATATAACCACATGCACGAATGCCTTC-GGTCTTAGC
1 CCGGATTTAA-CACTTGCACAAATGCCTTCGGGTCTTAGC
** *
25495385 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATTTAAC-ACTTGCACAAATGCCTTCGGGTCTTAGC
*
25495425 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATTTAAC-ACTTGCACAAATGCCTTCGGGTCTTAGC
* * * * *
25495465 CCGGATTTAGTCACTAGCATAATTGCCTTCGGGTCTTAAC
1 CCGGATTTA-ACACTTGCACAAATGCCTTCGGGTCTTAGC
* * * *
25495505 CCGGATTTAACTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATTTAAC-ACTTGCACAAATGCCTTCGGGTCTTAGC
25495545 CCGGAT
1 CCGGAT
25495551 ATCATTTAAT
Statistics
Matches: 142, Mismatches: 20, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
38 1 0.01
39 26 0.18
40 114 0.80
41 1 0.01
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.27
Consensus pattern (39 bp):
CCGGATTTAACACTTGCACAAATGCCTTCGGGTCTTAGC
Found at i:25495495 original size:80 final size:81
Alignment explanation
Indices: 25495346--25495550 Score: 238
Period size: 80 Copynumber: 2.6 Consensus size: 81
25495336 CGGAATACAA
* * * *
25495346 CCGGATATAACCACATGCACGAATGCCTTC-GGTCTTAGCCCGGA-TAGAACGACTTGCACAAAT
1 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
*
25495409 GCCTTCGGGTATTAGC
66 GCCTTCGGGTATTAAC
* * *
25495425 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTTAG-TC-ACTAGCATAAT
1 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGA-TTAGAACGACTAGCACAAA
*
25495488 TGCCTTCGGGTCTTAAC
65 TGCCTTCGGGTATTAAC
* * ** * *
25495505 CCGGATTTAACTACTAGCATAAATGTCTTCGGGACTTAGCCCGGAT
1 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT
25495551 ATCATTTAAT
Statistics
Matches: 108, Mismatches: 15, Indels: 6
0.84 0.12 0.05
Matches are distributed among these distances:
79 28 0.26
80 76 0.70
81 1 0.01
82 3 0.03
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.27
Consensus pattern (81 bp):
CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
GCCTTCGGGTATTAAC
Found at i:25503422 original size:40 final size:39
Alignment explanation
Indices: 25503377--25503584 Score: 209
Period size: 40 Copynumber: 5.2 Consensus size: 39
25503367 CGGAATACAA
*
25503377 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
25503417 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
25503457 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* ** * * *
25503497 CCGGATTTAGTCACTAGCATAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
* * * * *
25503537 CCGGATTTAACTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
25503577 CCGGATAT
1 CCGGATAT
25503585 CATTTAATTG
Statistics
Matches: 142, Mismatches: 25, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
39 1 0.01
40 141 0.99
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.27
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:25503524 original size:80 final size:81
Alignment explanation
Indices: 25503377--25503582 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 81
25503367 CGGAATACAA
* * * *
25503377 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGA-TAGAACGACTTGCACAAAT
1 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
*
25503441 GCCTTCGGGTATTAGC
66 GCCTTCGGGTATTAAC
* * *
25503457 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTTAG-TC-ACTAGCATAAT
1 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGA-TTAGAACGACTAGCACAAA
*
25503520 TGCCTTCGGGTCTTAAC
65 TGCCTTCGGGTATTAAC
* * ** * *
25503537 CCGGATTTAACTACTAGCATAAATGTCTTCGGGACTTAGCCCGGAT
1 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT
25503583 ATCATTTAAT
Statistics
Matches: 109, Mismatches: 15, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
79 1 0.01
80 104 0.95
81 1 0.01
82 3 0.03
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.27
Consensus pattern (81 bp):
CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
GCCTTCGGGTATTAAC
Found at i:25509352 original size:71 final size:71
Alignment explanation
Indices: 25509234--25509379 Score: 195
Period size: 71 Copynumber: 2.1 Consensus size: 71
25509224 ATGCACAAGA
* ** * * *
25509234 AAATCGAGGTTTATGTCGATGATATGATCGTAAAATCTCGAACAGAAGAAGAGCGTATACAAGTC
1 AAATCGAGGTTTATGTCAATGATATGATCACAAAATCTCAAACAGAAGAAGAGCATACACAAGTC
*
25509299 TTGAGG
66 TTAAGG
* *
25509305 AAATCGAGGTTTATGTTAATGATATGATCACAAAATC-CTAAATAGAAGAAGAGCATACACAAGT
1 AAATCGAGGTTTATGTCAATGATATGATCACAAAATCTC-AAACAGAAGAAGAGCATACACAAGT
25509369 CTTAAGG
65 CTTAAGG
25509376 AAAT
1 AAAT
25509380 TATTTTTGAG
Statistics
Matches: 65, Mismatches: 9, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
70 1 0.02
71 64 0.98
ACGTcount: A:0.41, C:0.12, G:0.21, T:0.25
Consensus pattern (71 bp):
AAATCGAGGTTTATGTCAATGATATGATCACAAAATCTCAAACAGAAGAAGAGCATACACAAGTC
TTAAGG
Found at i:25521696 original size:48 final size:48
Alignment explanation
Indices: 25521624--25521848 Score: 200
Period size: 48 Copynumber: 4.7 Consensus size: 48
25521614 TTAAGTTCTT
* * *
25521624 GATGCCATGTCCCATACATGGTCTTACACTGGCTCACATGTCGAGGTT
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATGTCGAGGTC
* * ** * *
25521672 GATGCCATGTCCCAGACATTGTCTTACACTAGCTCTCATAACAATGTC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATGTCGAGGTC
* * * * *
25521720 GATGTCATATCCTAGACATGGTTTTACACT-GCCTCACATGTCGAGGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTAG-CTCACATGTCGAGGTC
* * * *** * * * *
25521768 GATGCCATGTTCTAGACATAGTCTTACACTAGCTCTTGTCTCAATGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATGTCGAGGTC
* *
25521816 AATGCCATGTCCTAGACATGGTCTTACACTAGC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGC
25521849 ACACGTATCA
Statistics
Matches: 141, Mismatches: 34, Indels: 4
0.79 0.19 0.02
Matches are distributed among these distances:
47 1 0.01
48 139 0.99
49 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.30
Consensus pattern (48 bp):
GATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATGTCGAGGTC
Found at i:25521803 original size:96 final size:96
Alignment explanation
Indices: 25521625--25521845 Score: 280
Period size: 96 Copynumber: 2.3 Consensus size: 96
25521615 TAAGTTCTTG
* * * * **
25521625 ATGCCATGTCCCATACATGGTCTTACACTGGCTCACATGTCGAGGTTGATGCCATGTCCCAGACA
1 ATGCCATATCCTAGACATGGTCTTACACTGCCTCACATGTCGAGGCCGATGCCATGTCCCAGACA
* * *
25521690 TTGTCTTACACTAGCTCTCATAACAATGTCG
66 TAGTCTTACACTAGCTCTCATAACAATGCCA
* * * *
25521721 ATGTCATATCCTAGACATGGTTTTACACTGCCTCACATGTCGAGGCCGATGCCATGTTCTAGACA
1 ATGCCATATCCTAGACATGGTCTTACACTGCCTCACATGTCGAGGCCGATGCCATGTCCCAGACA
** **
25521786 TAGTCTTACACTAGCTCTTGTCTCAATGCCA
66 TAGTCTTACACTAGCTCTCATAACAATGCCA
*
25521817 ATGCCATGTCCTAGACATGGTCTTACACT
1 ATGCCATATCCTAGACATGGTCTTACACT
25521846 AGCACACGTA
Statistics
Matches: 105, Mismatches: 20, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
96 105 1.00
ACGTcount: A:0.24, C:0.28, G:0.18, T:0.30
Consensus pattern (96 bp):
ATGCCATATCCTAGACATGGTCTTACACTGCCTCACATGTCGAGGCCGATGCCATGTCCCAGACA
TAGTCTTACACTAGCTCTCATAACAATGCCA
Found at i:25523526 original size:15 final size:15
Alignment explanation
Indices: 25523506--25523535 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
25523496 GGTCATCAAC
25523506 TACTTTACCAAGTGG
1 TACTTTACCAAGTGG
25523521 TACTTTACCAAGTGG
1 TACTTTACCAAGTGG
25523536 GTAGAAGCCG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.33
Consensus pattern (15 bp):
TACTTTACCAAGTGG
Found at i:25525242 original size:44 final size:43
Alignment explanation
Indices: 25525125--25525395 Score: 132
Period size: 51 Copynumber: 5.7 Consensus size: 43
25525115 GTCACCATAG
* *
25525125 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTACCATGA
1 CAAACCTTATCT-CCTGAAGTTGCAGTGGAGAAGATTGAAG----C-T-A
*
25525175 CAAACCTTATCTCCTTAAGGTTGCAGTGGAGAAGATTGAAGCTA
1 CAAACCTTATCTCCTGAA-GTTGCAGTGGAGAAGATTGAAGCTA
* * *
25525219 CAGACCTTATTTTCCTGAAGTTGCAGTGGA-ACAGATTAAAGCTACAA
1 CAAACCTTA-TCTCCTGAAGTTGCAGTGGAGA-AGATTGAAGCT---A
* * * *
25525266 GTTGCAAATCTTATCTCCCTAAAGTTGCAGTGGA-ACAAATTAAAGCTA
1 ----CAAACCTTATCT-CCTGAAGTTGCAGTGGAGA-AGATTGAAGCTA
* * * *
25525314 CAAGTTACAAATCTTATCTCTCAGAAATTGCAGTGGAGCAGATTAAAGCTA
1 CAA---AC----CTTATCTC-CTGAAGTTGCAGTGGAGAAGATTGAAGCTA
* *
25525365 CAAATCTTATCTCGCTGAAGTTGTAGTGGAG
1 CAAACCTTATCTC-CTGAAGTTGCAGTGGAG
25525396 CATATTAAAA
Statistics
Matches: 178, Mismatches: 23, Indels: 46
0.72 0.09 0.19
Matches are distributed among these distances:
43 1 0.01
44 55 0.31
45 8 0.04
46 1 0.01
47 2 0.01
48 2 0.01
49 5 0.03
50 35 0.20
51 69 0.39
ACGTcount: A:0.33, C:0.18, G:0.20, T:0.28
Consensus pattern (43 bp):
CAAACCTTATCTCCTGAAGTTGCAGTGGAGAAGATTGAAGCTA
Found at i:25525300 original size:51 final size:51
Alignment explanation
Indices: 25525235--25525367 Score: 205
Period size: 51 Copynumber: 2.6 Consensus size: 51
25525225 TTATTTTCCT
*
25525235 GAAGTTGCAGTGGAACAGATTAAAGCTACAAGTTGCAAATCTTATCTCCCTA
1 GAAGTTGCAGTGGAACAGATTAAAGCTACAAGTTACAAATCTTATCTCCC-A
* *
25525287 -AAGTTGCAGTGGAACAAATTAAAGCTACAAGTTACAAATCTTATCTCTCA
1 GAAGTTGCAGTGGAACAGATTAAAGCTACAAGTTACAAATCTTATCTCCCA
* *
25525337 GAAATTGCAGTGGAGCAGATTAAAGCTACAA
1 GAAGTTGCAGTGGAACAGATTAAAGCTACAA
25525368 ATCTTATCTC
Statistics
Matches: 74, Mismatches: 6, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
50 1 0.01
51 73 0.99
ACGTcount: A:0.38, C:0.17, G:0.19, T:0.26
Consensus pattern (51 bp):
GAAGTTGCAGTGGAACAGATTAAAGCTACAAGTTACAAATCTTATCTCCCA
Found at i:25525315 original size:95 final size:94
Alignment explanation
Indices: 25525138--25525315 Score: 234
Period size: 95 Copynumber: 1.9 Consensus size: 94
25525128 ATCTTATCTC
* * * * * *
25525138 CCTGAAGTTGCAGTGGAGCAGATTGAAGTTACCATGACAAACCTTATCTCCTTAAGGTTGCAGTG
1 CCTGAAGTTGCAGTGGAACAGATTAAAGCTACAATGACAAACCTTATCTCCCTAAAGTTGCAGTG
* *
25525203 GAGAAGATTGAAGCTACAGACCTTATTTT
66 GAGAAAATTAAAGCTACAGACCTTATTTT
*
25525232 CCTGAAGTTGCAGTGGAACAGATTAAAGCTACAAGTTG-CAAATCTTATCTCCCTAAAGTTGCAG
1 CCTGAAGTTGCAGTGGAACAGATTAAAGCTACAA--TGACAAACCTTATCTCCCTAAAGTTGCAG
25525296 TGGA-ACAAATTAAAGCTACA
64 TGGAGA-AAATTAAAGCTACA
25525316 AGTTACAAAT
Statistics
Matches: 72, Mismatches: 9, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
94 31 0.43
95 39 0.54
96 2 0.03
ACGTcount: A:0.33, C:0.19, G:0.21, T:0.27
Consensus pattern (94 bp):
CCTGAAGTTGCAGTGGAACAGATTAAAGCTACAATGACAAACCTTATCTCCCTAAAGTTGCAGTG
GAGAAAATTAAAGCTACAGACCTTATTTT
Found at i:25525396 original size:44 final size:42
Alignment explanation
Indices: 25525319--25525437 Score: 132
Period size: 44 Copynumber: 2.7 Consensus size: 42
25525309 AGCTACAAGT
* * *
25525319 TACAAATCTTATCTCTCAGAAATTGCAGTGGAGCAGATTAAAGC
1 TACAAATCTTATCTC-CTGAAGTTGCAGTGGAGCAGATTAAA-A
* *
25525363 TACAAATCTTATCTCGCTGAAGTTGTAGTGGAGCATATTAAAA
1 TACAAATCTTATCTC-CTGAAGTTGCAGTGGAGCAGATTAAAA
25525406 TGACAAATACTATATCT-CTGAAGTTGCAGTGG
1 T-ACAAAT-CT-TATCTCCTGAAGTTGCAGTGG
25525438 GTCGAATTAA
Statistics
Matches: 65, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
43 1 0.02
44 57 0.88
45 2 0.03
46 5 0.08
ACGTcount: A:0.34, C:0.16, G:0.19, T:0.30
Consensus pattern (42 bp):
TACAAATCTTATCTCCTGAAGTTGCAGTGGAGCAGATTAAAA
Found at i:25531414 original size:41 final size:41
Alignment explanation
Indices: 25531302--25531519 Score: 242
Period size: 41 Copynumber: 5.4 Consensus size: 41
25531292 TAATCAATAT
* * *
25531302 CTCGCACACTAAGTGCCATACATAGCTGAAGTTATCTC-AA
1 CTCGCACACTAAGTGCCATATATAGCCGAAGCTATCTCGAA
* * * * * **
25531342 ATCACATATTAAGTGCCATGTATAGTTGAAGCTATCTCGAA
1 CTCGCACACTAAGTGCCATATATAGCCGAAGCTATCTCGAA
* * * * *
25531383 CTCGTACACTAAGTGCTATAGATAGCCGAAGCTATCTTGAT
1 CTCGCACACTAAGTGCCATATATAGCCGAAGCTATCTCGAA
* *
25531424 CTTGCACACTAAGTGCCATATATAGCCGAAGCTATCTCGAT
1 CTCGCACACTAAGTGCCATATATAGCCGAAGCTATCTCGAA
* *
25531465 CTCACACACTAAGTGCCATATATAGCCGAAGCTATGTCGAA
1 CTCGCACACTAAGTGCCATATATAGCCGAAGCTATCTCGAA
*
25531506 -TCGCACATTAAGTG
1 CTCGCACACTAAGTG
25531520 TCACATAGTT
Statistics
Matches: 146, Mismatches: 31, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
40 42 0.29
41 104 0.71
ACGTcount: A:0.32, C:0.24, G:0.17, T:0.27
Consensus pattern (41 bp):
CTCGCACACTAAGTGCCATATATAGCCGAAGCTATCTCGAA
Found at i:25538909 original size:41 final size:41
Alignment explanation
Indices: 25538791--25539020 Score: 270
Period size: 41 Copynumber: 5.7 Consensus size: 41
25538781 AATACTCAAT
* *
25538791 ATCTCGCACACTAAGTGCCATACATAGCCGAAGTTATCTC-
1 ATCTCGCACACTAAGTGCCATATATAGCCGAAGCTATCTCG
** * *
25538831 AAATCGCACATTAAGTGCCATGTATAGCCGAAGCTATCTCG
1 ATCTCGCACACTAAGTGCCATATATAGCCGAAGCTATCTCG
* * * *
25538872 ATCTCACACACTAAGTGCTATATATA-CTCGAATCTATCTCA
1 ATCTCGCACACTAAGTGCCATATATAGC-CGAAGCTATCTCG
25538913 ATCTCGCACACTAAGTGCCATATATAGCCGAAGCTATCTCG
1 ATCTCGCACACTAAGTGCCATATATAGCCGAAGCTATCTCG
* * * * *
25538954 ATCTTGCACACTAAGTGCCATATATATCTGAAGCTATGTCAA
1 ATCTCGCACACTAAGTGCCATATATAGCCGAAGCTATCTC-G
*
25538996 AT-T-GCACACTAAGTGCCACATATAG
1 ATCTCGCACACTAAGTGCCATATATAG
25539021 TTGATTTGTC
Statistics
Matches: 161, Mismatches: 25, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
40 55 0.34
41 103 0.64
42 3 0.02
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.27
Consensus pattern (41 bp):
ATCTCGCACACTAAGTGCCATATATAGCCGAAGCTATCTCG
Found at i:25539008 original size:122 final size:122
Alignment explanation
Indices: 25538791--25539011 Score: 304
Period size: 122 Copynumber: 1.8 Consensus size: 122
25538781 AATACTCAAT
* * *
25538791 ATCTCGCACACTAAGTGCCATACATAGCCGAAGTTATCTCAAATCGCACATTAAGTGCCATGTAT
1 ATCTCGCACACTAAGTGCCATACATAGCCGAAGCTATCTCAAATCGCACACTAAGTGCCATATAT
*
25538856 AGCCGAAGCTATCTCGATCTCACACACTAAGTGCTATATATACTCGAATCTATCTCA
66 AGCCGAAGCTATCTCAATCTCACACACTAAGTGCTATATATACTCGAATCTATCTCA
* *
25538913 ATCTCGCACACTAAGTGCCATATATAGCCGAAGCTATCTC-GATCTTGCACACTAAGTGCCATAT
1 ATCTCGCACACTAAGTGCCATACATAGCCGAAGCTATCTCAAATC--GCACACTAAGTGCCATAT
* * * *
25538977 ATATCTGAAGCTATGTCAAAT-T-GCACACTAAGTGC
64 ATAGCCGAAGCTATCTC-AATCTCACACACTAAGTGC
25539012 CACATATAGT
Statistics
Matches: 86, Mismatches: 10, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
121 3 0.03
122 50 0.58
123 31 0.36
124 2 0.02
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.27
Consensus pattern (122 bp):
ATCTCGCACACTAAGTGCCATACATAGCCGAAGCTATCTCAAATCGCACACTAAGTGCCATATAT
AGCCGAAGCTATCTCAATCTCACACACTAAGTGCTATATATACTCGAATCTATCTCA
Found at i:25550985 original size:32 final size:34
Alignment explanation
Indices: 25550912--25550990 Score: 87
Period size: 33 Copynumber: 2.4 Consensus size: 34
25550902 TAGAAAATAT
25550912 AAAATTA-TTAAAATTTTATAAAAAATTTATAGA
1 AAAATTATTTAAAATTTTATAAAAAATTTATAGA
* *
25550945 AAAA-TATTTATAA-TTTATTAAAACATTT-TA-A
1 AAAATTATTTAAAATTTTA-TAAAAAATTTATAGA
*
25550976 AAAATTATTTGAAAT
1 AAAATTATTTAAAAT
25550991 ATAAAATTTA
Statistics
Matches: 38, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
31 5 0.13
32 15 0.39
33 18 0.47
ACGTcount: A:0.54, C:0.01, G:0.03, T:0.42
Consensus pattern (34 bp):
AAAATTATTTAAAATTTTATAAAAAATTTATAGA
Found at i:25551007 original size:19 final size:18
Alignment explanation
Indices: 25550975--25551018 Score: 70
Period size: 19 Copynumber: 2.4 Consensus size: 18
25550965 AAACATTTTA
*
25550975 AAAAATTATTTGAAATAT
1 AAAATTTATTTGAAATAT
25550993 AAAATTTATTATGAAATAT
1 AAAATTTATT-TGAAATAT
25551012 AAAATTT
1 AAAATTT
25551019 TAAAGTTATT
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
18 9 0.38
19 15 0.62
ACGTcount: A:0.55, C:0.00, G:0.05, T:0.41
Consensus pattern (18 bp):
AAAATTTATTTGAAATAT
Found at i:25554297 original size:45 final size:47
Alignment explanation
Indices: 25554248--25554349 Score: 120
Period size: 45 Copynumber: 2.2 Consensus size: 47
25554238 CTGGAGCTCT
* * *
25554248 CTGATAATA-ACTCTTCGGAGTTACCTATTAAGCTCA-ATGAGCTTC
1 CTGATAATAGACTCTTAGGAGTTACCTATTAAGCCCAGATAAGCTTC
* * *
25554293 CTGAT-ATAGACTCTTATGAGTTTCCTATTTAGCCCAGATAAGCTTC
1 CTGATAATAGACTCTTAGGAGTTACCTATTAAGCCCAGATAAGCTTC
25554339 CTGATACATAG
1 CTGATA-ATAG
25554350 CTCACATGAG
Statistics
Matches: 47, Mismatches: 6, Indels: 5
0.81 0.10 0.09
Matches are distributed among these distances:
44 3 0.06
45 27 0.57
46 13 0.28
48 4 0.09
ACGTcount: A:0.28, C:0.22, G:0.16, T:0.34
Consensus pattern (47 bp):
CTGATAATAGACTCTTAGGAGTTACCTATTAAGCCCAGATAAGCTTC
Found at i:25554920 original size:23 final size:23
Alignment explanation
Indices: 25554890--25554946 Score: 105
Period size: 23 Copynumber: 2.5 Consensus size: 23
25554880 CTTTAGCCGG
*
25554890 TTTTGGTATAAATAGAAAACTTA
1 TTTTGGTATAAATAGAAAACCTA
25554913 TTTTGGTATAAATAGAAAACCTA
1 TTTTGGTATAAATAGAAAACCTA
25554936 TTTTGGTATAA
1 TTTTGGTATAA
25554947 TGGCATGTAT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 33 1.00
ACGTcount: A:0.40, C:0.05, G:0.14, T:0.40
Consensus pattern (23 bp):
TTTTGGTATAAATAGAAAACCTA
Found at i:25561683 original size:63 final size:64
Alignment explanation
Indices: 25561506--25561756 Score: 201
Period size: 67 Copynumber: 3.9 Consensus size: 64
25561496 ATATAGTTCG
* * * *
25561506 GCTCTCTTGTAC-ACATGGTGAACACTTAGTACCACCCATGTGACCTAGC--CAGTTTATCTCGT
1 GCTCTCTTGT-CTACATGGTGTACACATAGTACCACCCATGCGACCTAGCTACA-TATATCTCGT
25561568 A
64 A
* * * * * *
25561569 GCTCTCTTGT-TACATGGTGTCCTTCACCTGGAACCACGCATGCGACCTAGCTACATATATCCCG
1 GCTCTCTTGTCTACATGGTG---TACACATAGTACCACCCATGCGACCTAGCTACATATATCTCG
25561633 TA
63 TA
*
25561635 GCTCTCTTGTCTACATGGTGTACACATAGTA-TACCCATGCGACCTAGCTACATCATAATGTCTC
1 GCTCTCTTGTCTACATGGTGTACACATAGTACCACCCATGCGACCTAGCTACAT-AT-A--TCTC
25561699 GTA
62 GTA
* * * ** *
25561702 GCTCTCTTGTAC-ACATGATGTGCAC-TCAGCACCATACATGTGACCTAGCTACATA
1 GCTCTCTTGT-CTACATGGTGTACACAT-AGTACCACCCATGCGACCTAGCTACATA
25561757 CCATCTGTAT
Statistics
Matches: 151, Mismatches: 23, Indels: 24
0.76 0.12 0.12
Matches are distributed among these distances:
62 8 0.05
63 30 0.20
64 9 0.06
65 23 0.15
66 20 0.13
67 42 0.28
68 19 0.13
ACGTcount: A:0.24, C:0.29, G:0.17, T:0.29
Consensus pattern (64 bp):
GCTCTCTTGTCTACATGGTGTACACATAGTACCACCCATGCGACCTAGCTACATATATCTCGTA
Found at i:25568312 original size:25 final size:26
Alignment explanation
Indices: 25568284--25568343 Score: 90
Period size: 25 Copynumber: 2.4 Consensus size: 26
25568274 TAGCTCAGAA
*
25568284 GAGCATTCC-GTTATATAGTTCCTAT
1 GAGCATTCCTGTTATATAGTTACTAT
25568309 GAGCA-TCCTGTTATATAGTTACTAT
1 GAGCATTCCTGTTATATAGTTACTAT
25568334 GAGCA-TCCTG
1 GAGCATTCCTG
25568344 ATCGGTAGTG
Statistics
Matches: 33, Mismatches: 1, Indels: 2
0.92 0.03 0.06
Matches are distributed among these distances:
24 3 0.09
25 30 0.91
ACGTcount: A:0.25, C:0.20, G:0.18, T:0.37
Consensus pattern (26 bp):
GAGCATTCCTGTTATATAGTTACTAT
Found at i:25568884 original size:2 final size:2
Alignment explanation
Indices: 25568877--25568904 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
25568867 TATGGAAAGC
25568877 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
25568905 GAAGCCACTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:25575239 original size:22 final size:21
Alignment explanation
Indices: 25575201--25575251 Score: 66
Period size: 22 Copynumber: 2.4 Consensus size: 21
25575191 TTATAAAATT
**
25575201 TATATTTTTTTAAAATTTTCC
1 TATATTTTTAAAAAATTTTCC
*
25575222 TATATTTTTAAAATAATTTTTC
1 TATATTTTTAAAA-AATTTTCC
25575244 TATATTTT
1 TATATTTT
25575252 ATAATTTTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
21 11 0.42
22 15 0.58
ACGTcount: A:0.31, C:0.06, G:0.00, T:0.63
Consensus pattern (21 bp):
TATATTTTTAAAAAATTTTCC
Found at i:25575257 original size:18 final size:17
Alignment explanation
Indices: 25575234--25575272 Score: 62
Period size: 18 Copynumber: 2.3 Consensus size: 17
25575224 TATTTTTAAA
25575234 ATAATTTTTCTATATTTT
1 ATAATTTTT-TATATTTT
25575252 ATAATTTTTTATATTTT
1 ATAATTTTTTATATTTT
25575269 -TAAT
1 ATAAT
25575273 AGTTTTTTAA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
16 4 0.19
17 8 0.38
18 9 0.43
ACGTcount: A:0.31, C:0.03, G:0.00, T:0.67
Consensus pattern (17 bp):
ATAATTTTTTATATTTT
Found at i:25576780 original size:21 final size:21
Alignment explanation
Indices: 25576755--25576796 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
25576745 TTAACAGAAC
*
25576755 AGCTGATGTGGCAAGTTAACT
1 AGCTGACGTGGCAAGTTAACT
*
25576776 AGCTGACGTGGCCAGTTAACT
1 AGCTGACGTGGCAAGTTAACT
25576797 TGCCACGTTG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.26, C:0.19, G:0.29, T:0.26
Consensus pattern (21 bp):
AGCTGACGTGGCAAGTTAACT
Found at i:25576854 original size:12 final size:12
Alignment explanation
Indices: 25576839--25576863 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
25576829 AACCTAAAAA
25576839 AACCCCTTTAAC
1 AACCCCTTTAAC
25576851 AACCCCTTTAAC
1 AACCCCTTTAAC
25576863 A
1 A
25576864 GAGAAGAGGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.36, C:0.40, G:0.00, T:0.24
Consensus pattern (12 bp):
AACCCCTTTAAC
Found at i:25579056 original size:29 final size:29
Alignment explanation
Indices: 25579024--25579158 Score: 155
Period size: 29 Copynumber: 4.7 Consensus size: 29
25579014 ATACCCTCCG
** * *
25579024 AGCTCGCACACCCAGTGCCGTATTTTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
* * * *
25579053 AGCTTGCACACATAGTGTCATATTTTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
*
25579082 AGCAT-GCACACTTAGTGCCTTATATTTCC
1 AGC-TCGCACACTTAGTGCCATATATTTCC
*
25579111 AGCACGCACACTTAGTGCCATATATTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
*
25579140 AGCACGCACACTTAGTGCC
1 AGCTCGCACACTTAGTGCC
25579159 GATCTCGTCA
Statistics
Matches: 93, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
29 92 0.99
30 1 0.01
ACGTcount: A:0.24, C:0.31, G:0.16, T:0.30
Consensus pattern (29 bp):
AGCTCGCACACTTAGTGCCATATATTTCC
Found at i:25579091 original size:58 final size:58
Alignment explanation
Indices: 25578970--25579159 Score: 179
Period size: 58 Copynumber: 3.3 Consensus size: 58
25578960 TACTCGATTT
* * * *** *
25578970 CGCACACTTAGTGCCACGTA-ATTT-AAGCCCGCACACACAGTGCCATA-CCCTCCGAGCT
1 CGCACACTTAGTG-C-CGTATATTTCCAGCACGCACACATAGTGCCATATATTTCC-AGCA
** * ** * *
25579028 CGCACACCCAGTGCCGTATTTTTCCAGCTTGCACACATAGTGTCATATTTTTCCAGCA
1 CGCACACTTAGTGCCGTATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCA
* * *
25579086 TGCACACTTAGTGCCTTATATTTCCAGCACGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCGTATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCA
25579144 CGCACACTTAGTGCCG
1 CGCACACTTAGTGCCG
25579160 ATCTCGTCAC
Statistics
Matches: 105, Mismatches: 24, Indels: 6
0.78 0.18 0.04
Matches are distributed among these distances:
56 4 0.04
57 4 0.04
58 94 0.90
59 3 0.03
ACGTcount: A:0.24, C:0.33, G:0.16, T:0.26
Consensus pattern (58 bp):
CGCACACTTAGTGCCGTATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCA
Found at i:25587041 original size:29 final size:29
Alignment explanation
Indices: 25586954--25587143 Score: 163
Period size: 29 Copynumber: 6.6 Consensus size: 29
25586944 CTACTCGATT
*
25586954 TCGCACACTTAGTGCCACGTA-ATTT-AAGC
1 TCGCACACTTAGTGCCA--TATATTTCCAGC
* * ***
25586983 CCGCACACATAGTGCCATA-CCCTCCGAGC
1 TCGCACACTTAGTGCCATATATTTCC-AGC
** * *
25587012 TCGCACACCCAGTGCCGTATTTTTCCAGC
1 TCGCACACTTAGTGCCATATATTTCCAGC
* * * *
25587041 TTGCACACATAGTGTCATATTTTTCCAGC
1 TCGCACACTTAGTGCCATATATTTCCAGC
*
25587070 AT-GCACACTTAGTGCCTTATATTTCCAGC
1 -TCGCACACTTAGTGCCATATATTTCCAGC
*
25587099 ACGCACACTTAGTGCCATATATTTCCAGC
1 TCGCACACTTAGTGCCATATATTTCCAGC
*
25587128 ACGCACACTTAGTGCC
1 TCGCACACTTAGTGCC
25587144 GATCTCGTCA
Statistics
Matches: 132, Mismatches: 24, Indels: 10
0.80 0.14 0.06
Matches are distributed among these distances:
27 3 0.02
29 125 0.95
30 4 0.03
ACGTcount: A:0.24, C:0.33, G:0.16, T:0.27
Consensus pattern (29 bp):
TCGCACACTTAGTGCCATATATTTCCAGC
Found at i:25587076 original size:58 final size:58
Alignment explanation
Indices: 25586955--25587144 Score: 188
Period size: 58 Copynumber: 3.3 Consensus size: 58
25586945 TACTCGATTT
* * *** *
25586955 CGCACACTTAGTGCCACGTA-ATTT-AAGCCCGCACACATAGTGCCATA-CCCTCCGAGCT
1 CGCACACTTAGTG-C-CGTATATTTCCAGCACGCACACATAGTGCCATATATTTCC-AGCA
** * ** * *
25587013 CGCACACCCAGTGCCGTATTTTTCCAGCTTGCACACATAGTGTCATATTTTTCCAGCA
1 CGCACACTTAGTGCCGTATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCA
* * *
25587071 TGCACACTTAGTGCCTTATATTTCCAGCACGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCGTATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCA
25587129 CGCACACTTAGTGCCG
1 CGCACACTTAGTGCCG
25587145 ATCTCGTCAC
Statistics
Matches: 106, Mismatches: 23, Indels: 6
0.79 0.17 0.04
Matches are distributed among these distances:
56 4 0.04
57 4 0.04
58 95 0.90
59 3 0.03
ACGTcount: A:0.24, C:0.33, G:0.16, T:0.27
Consensus pattern (58 bp):
CGCACACTTAGTGCCGTATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCA
Found at i:25589554 original size:21 final size:21
Alignment explanation
Indices: 25589528--25589569 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
25589518 CAATGTGGCA
*
25589528 AGTTAACTAGCCACCTCAGCT
1 AGTTAACTAGCCACATCAGCT
*
25589549 AGTTAACTTGCCACATCAGCT
1 AGTTAACTAGCCACATCAGCT
25589570 GTTCTATTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.29, C:0.31, G:0.14, T:0.26
Consensus pattern (21 bp):
AGTTAACTAGCCACATCAGCT
Found at i:25593475 original size:38 final size:37
Alignment explanation
Indices: 25593433--25593612 Score: 147
Period size: 38 Copynumber: 4.9 Consensus size: 37
25593423 GGGTTGACAA
25593433 AGACCTAGT-TAAGGCCAACGTTTAAAAAAGGTTGGAAT
1 AGACCTAGTCTAAGG-CAAC-TTTAAAAAAGGTTGGAAT
* *
25593471 AGACCTA-TCTAAGGCAACCTT-AAAAAGGTTGAAAT
1 AGACCTAGTCTAAGGCAACTTTAAAAAAGGTTGGAAT
* * *
25593506 AGACCTTGTCTAAAGCAACATTTAAAAAAGGTTGGTAT
1 AGACCTAGTCTAAGGCAAC-TTTAAAAAAGGTTGGAAT
* ** * *
25593544 AGAGCC-ACT-TAAGATAACCTT-AAAAAGGTTGGGAT
1 AGA-CCTAGTCTAAGGCAACTTTAAAAAAGGTTGGAAT
* * * *
25593579 AGACCTTGTTTAAGGCACCCTTTAAAAAAAGTTG
1 AGACCTAGTCTAAGGCA-ACTTTAAAAAAGGTTG
25593613 AGATAGGCTC
Statistics
Matches: 112, Mismatches: 21, Indels: 18
0.74 0.14 0.12
Matches are distributed among these distances:
34 2 0.02
35 36 0.32
36 19 0.17
37 16 0.14
38 37 0.33
39 2 0.02
ACGTcount: A:0.39, C:0.15, G:0.20, T:0.26
Consensus pattern (37 bp):
AGACCTAGTCTAAGGCAACTTTAAAAAAGGTTGGAAT
Found at i:25593507 original size:35 final size:36
Alignment explanation
Indices: 25593457--25593680 Score: 153
Period size: 35 Copynumber: 6.3 Consensus size: 36
25593447 CCAACGTTTA
25593457 AAAAAGGTTG-GAATAGACC-TATCTAAGGCAACCTT
1 AAAAAGGTTGAG-ATAGACCTTATCTAAGGCAACCTT
* * * *
25593492 AAAAAGGTTGAAATAGACCTTGTCTAAAGCAACATTT
1 AAAAAGGTTGAGATAGACCTTATCTAAGGCAAC-CTT
**
25593529 AAAAAAGGTTG-GTATAGAGCC--A-CTTAAGATAACCTT
1 -AAAAAGGTTGAG-ATAGA-CCTTATC-TAAGGCAACCTT
* * * *
25593565 AAAAAGGTTGGGATAGACCTTGTTTAAGGCACCCTTT
1 AAAAAGGTTGAGATAGACCTTATCTAAGGCAACC-TT
* * * * *
25593602 AAAAAAAGTTGAGATAG-GCTCATCTAAGGTAATCTT
1 -AAAAAGGTTGAGATAGACCTTATCTAAGGCAACCTT
* *
25593638 AAAAAGGTTGAGATAGACCGT-T-TAAGGTAACCTT
1 AAAAAGGTTGAGATAGACCTTATCTAAGGCAACCTT
25593672 -AAAAGGTTG
1 AAAAAGGTTG
25593681 GGGTAAACAC
Statistics
Matches: 146, Mismatches: 29, Indels: 30
0.71 0.14 0.15
Matches are distributed among these distances:
33 9 0.06
34 13 0.09
35 48 0.33
36 25 0.17
37 20 0.14
38 29 0.20
39 2 0.01
ACGTcount: A:0.39, C:0.13, G:0.21, T:0.26
Consensus pattern (36 bp):
AAAAAGGTTGAGATAGACCTTATCTAAGGCAACCTT
Found at i:25593510 original size:73 final size:72
Alignment explanation
Indices: 25593424--25593664 Score: 233
Period size: 73 Copynumber: 3.3 Consensus size: 72
25593414 TTTATTGAAG
* * *
25593424 GGTTGACAA-AGACCTAGTTAAGGCCAACGTTTAAAAAAGGTTGGAATAGACCTATCTAAGGCAA
1 GGTTGA-AATAGACCTTGTTAAGG-CAACATTTAAAAAAGGTTGGAATAGACCTATCTAAGGTAA
25593488 CCTTAAAAA
64 CCTTAAAAA
* * *
25593497 GGTTGAAATAGACCTTGTCTAAAGCAACATTTAAAAAAGGTTGGTATAGAGCC-A-CTTAAGATA
1 GGTTGAAATAGACCTTGT-TAAGGCAACATTTAAAAAAGGTTGGAATAGA-CCTATC-TAAGGTA
25593560 ACCTTAAAAA
63 ACCTTAAAAA
** * * * *
25593570 GGTTGGGATAGACCTTGTTTAAGGCACCCTTTAAAAAAAGTT-GAGATAG-GCTCATCTAAGGTA
1 GGTTGAAATAGACCTTG-TTAAGGCAACATTTAAAAAAGGTTGGA-ATAGACCT-ATCTAAGGTA
*
25593633 ATCTTAAAAA
63 ACCTTAAAAA
* *
25593643 GGTTGAGATAGACCGT-TTAAGG
1 GGTTGAAATAGACCTTGTTAAGG
25593665 TAACCTTAAA
Statistics
Matches: 141, Mismatches: 18, Indels: 20
0.79 0.10 0.11
Matches are distributed among these distances:
71 7 0.05
72 4 0.03
73 122 0.87
74 8 0.06
ACGTcount: A:0.39, C:0.14, G:0.22, T:0.26
Consensus pattern (72 bp):
GGTTGAAATAGACCTTGTTAAGGCAACATTTAAAAAAGGTTGGAATAGACCTATCTAAGGTAACC
TTAAAAA
Found at i:25593811 original size:6 final size:6
Alignment explanation
Indices: 25593794--25593833 Score: 62
Period size: 6 Copynumber: 6.5 Consensus size: 6
25593784 AATAAACTAA
*
25593794 AAAATAT AAAATT AAAATT AAAATT AAAATT AAAGTT AAA
1 AAAAT-T AAAATT AAAATT AAAATT AAAATT AAAATT AAA
25593834 TATTCACTAA
Statistics
Matches: 32, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
6 27 0.84
7 5 0.16
ACGTcount: A:0.68, C:0.00, G:0.03, T:0.30
Consensus pattern (6 bp):
AAAATT
Found at i:25602343 original size:176 final size:176
Alignment explanation
Indices: 25602039--25603043 Score: 1161
Period size: 176 Copynumber: 5.7 Consensus size: 176
25602029 CTGGTGACTT
* * * * * *
25602039 AAATCTGC-CTCATTGCCAATACATGGAGATAAGATTCGCCATCCTCAATCTGCTCCGCAACTGC
1 AAATCTGCTC-CATTGCCGATACATGGAGATAAGATTCACCATCTTCGATCTGCTCCCCTACTGC
* *
25602103 TTAGGGAGATAAGATCTTCAATCTTCAGTCTGCTTCCTTGCTACATCAGGAATATAAGACTACAA
65 TTAGGGAGATAAGATCTTCAATCTTCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTACAA
*
25602168 TCGCCAACCTGCTCTTTTGCTACCTCAGAGAGATAAGGTCAGTGGTA
130 TCGCCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGTCAGTGGTA
*
25602215 AAATCTGCTCCATTGCCGATACATGGAGATAAGATTCACCATCTTTGATCTGCTCCCCTACTGCT
1 AAATCTGCTCCATTGCCGATACATGGAGATAAGATTCACCATCTTCGATCTGCTCCCCTACTGCT
** * * * * *
25602280 TAAAGATATAAAATCTTCAATTTTCAGTCTACTTCCTTGCTACCTCAGGAAGATAATACTACAAT
66 TAGGGAGATAAGATCTTCAATCTTCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTACAAT
*
25602345 CGCCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCCAGTGGTA
131 CGCCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGTCAGTGGTA
* *
25602391 AAATCTGCTCCATTACCGATACATAGAGATAAGATTCACCATCTTCGATCTGCTCCCCTACTGCT
1 AAATCTGCTCCATTGCCGATACATGGAGATAAGATTCACCATCTTCGATCTGCTCCCCTACTGCT
* * * * * * *
25602456 TAGAGATATAAAATCTTCAATTTTCAGTCTGCTTCTTTGCTACCTTAGGAAGATAAGACTA-ATT
66 TAGGGAGATAAGATCTTCAATCTTCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTACAAT
** *
25602520 CTTCAACATGCTCTCTTGCTACCTCAGAGAGATAAGG-CTAGTGGTA
131 CGCCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGTC-AGTGGTA
** * * *
25602566 AAATCTGCTTTATTACCGATACATGGAGATAAGATTCACCATCTTCGATCTGCTCCACTACTTCT
1 AAATCTGCTCCATTGCCGATACATGGAGATAAGATTCACCATCTTCGATCTGCTCCCCTACTGCT
*
25602631 TAGGGAAAT-AGATCTTCAATCTTCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTACAAT
66 TAGGGAGATAAGATCTTCAATCTTCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTACAAT
* *
25602695 CACCAACCTGCTCTCTTGTTACCAT-AGAGAGATAAGGTCAGTGGCTA
131 CGCCAACCTGCTCTCTTGCTACC-TCAGAGAGATAAGGTCAGTGG-TA
* * * **
25602742 AAATCTGCTCCATTGTCGATACATGGAGATAAGATTCGCTATCTTCGATCTGCTCTGCTACTGCT
1 AAATCTGCTCCATTGCCGATACATGGAGATAAGATTCACCATCTTCGATCTGCTCCCCTACTGCT
* * * * **
25602807 TCGGGAGATAAGATCTTCAATCTTCAGTCTGC-TCCACTGCAACCTCAGGGAGATAAGACTTGTA
66 TAGGGAGATAAGATCTTCAATCTTCAGTCTGCTTCC-TTGCTACCTCAGGAAGATAAGAC-TACA
* * * * * * *
25602871 TATTG--AGCCTGCTC-CATTGCAACTTCA-AGGAGATAAGG-CTGGTGACTT
129 -ATCGCCAACCTGCTCTC-TTGCTACCTCAGA-GAGATAAGGTC-AGTG-GTA
* * ** * * * * *
25602919 AAATCTGCTCCATTGCCGGTACATGGAGATAAGACTCGTCGTCTTTGGTCTGTTCCACTACTGCT
1 AAATCTGCTCCATTGCCGATACATGGAGATAAGATTCACCATCTTCGATCTGCTCCCCTACTGCT
* * * * * * * *
25602984 TAGGGAAATAAGACCTGCAATCTTTAGTCTAC-TCCACTGCAACCTCAGGGAGATAAGACT
66 TAGGGAGATAAGATCTTCAATCTTCAGTCTGCTTCC-TTGCTACCTCAGGAAGATAAGACT
25603044 TGTTATGATC
Statistics
Matches: 726, Mismatches: 88, Indels: 30
0.86 0.10 0.04
Matches are distributed among these distances:
174 48 0.07
175 148 0.20
176 349 0.48
177 177 0.24
178 2 0.00
179 2 0.00
ACGTcount: A:0.28, C:0.25, G:0.18, T:0.30
Consensus pattern (176 bp):
AAATCTGCTCCATTGCCGATACATGGAGATAAGATTCACCATCTTCGATCTGCTCCCCTACTGCT
TAGGGAGATAAGATCTTCAATCTTCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTACAAT
CGCCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGTCAGTGGTA
Found at i:25602746 original size:351 final size:351
Alignment explanation
Indices: 25602039--25603043 Score: 1250
Period size: 351 Copynumber: 2.9 Consensus size: 351
25602029 CTGGTGACTT
* * * *
25602039 AAATCTGC-CTCATTGCCAATACATGGAGATAAGATTCGCCATCCTCAATCTGCTCCGCAACTGC
1 AAATCTGCTC-CATTGCCGATACATGGAGATAAGATTCGCCATCTTCGATCTGCTCCGCTACTGC
* * * *
25602103 TTAGGGAGATAAGATCTTCAATCTTCAGTCTGCTTCCTTGCTACATCAGGAATATAAGACTACAA
65 TTAGGGAGATAAGATCTTCAATCTTCAGTCTGCTTCATTGCTACCTCAGGAAGATAAGACTA-AT
** *
25602168 TCGCCAACCTGCTCTTTTGCTACCTCAGAGAGATAAGG-TCAGTGGTAAAATCTGCTCCATTGCC
129 TCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCT-AGTGGTAAAATCTGCTCCATTGCC
* ** * *
25602232 GATACATGGAGATAAGATTCACCATCTTTGATCTGCTCCCCTACTGCTTAAAGATATAAAATCTT
193 GATACATGGAGATAAGATTCACCATCTTTGATCTGCTCCACTACTGCTTAGGGAAATAAGATCTT
* * *
25602297 CAATTTTCAGTCTACTTCCTTGCTACCTCAGGAAGATAATACTACAATCGCCAACCTGCTCTCTT
258 CAATCTTCAGTCTACTTCCTTGCTACCTCAGGAAGATAAGACTACAATCACCAACCTGCTCTCTT
25602362 GCTACCTCAGAGAGATAAGGCCAGTGGTA
323 GCTACCTCAGAGAGATAAGGCCAGTGGTA
* * * *
25602391 AAATCTGCTCCATTACCGATACATAGAGATAAGATTCACCATCTTCGATCTGCTCCCCTACTGCT
1 AAATCTGCTCCATTGCCGATACATGGAGATAAGATTCGCCATCTTCGATCTGCTCCGCTACTGCT
* * * * * *
25602456 TAGAGATATAAAATCTTCAATTTTCAGTCTGCTTCTTTGCTACCTTAGGAAGATAAGACTAATTC
66 TAGGGAGATAAGATCTTCAATCTTCAGTCTGCTTCATTGCTACCTCAGGAAGATAAGACTAATTC
* ** *
25602521 TTCAACATGCTCTCTTGCTACCTCAGAGAGATAAGGCTAGTGGTAAAATCTGCTTTATTACCGAT
131 TTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTAGTGGTAAAATCTGCTCCATTGCCGAT
* *
25602586 ACATGGAGATAAGATTCACCATCTTCGATCTGCTCCACTACTTCTTAGGGAAAT-AGATCTTCAA
196 ACATGGAGATAAGATTCACCATCTTTGATCTGCTCCACTACTGCTTAGGGAAATAAGATCTTCAA
* *
25602650 TCTTCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTACAATCACCAACCTGCTCTCTTGTT
261 TCTTCAGTCTACTTCCTTGCTACCTCAGGAAGATAAGACTACAATCACCAACCTGCTCTCTTGCT
*
25602715 ACCAT-AGAGAGATAAGGTCAGTGGCTA
326 ACC-TCAGAGAGATAAGGCCAGTGG-TA
* * *
25602742 AAATCTGCTCCATTGTCGATACATGGAGATAAGATTCGCTATCTTCGATCTGCTCTGCTACTGCT
1 AAATCTGCTCCATTGCCGATACATGGAGATAAGATTCGCCATCTTCGATCTGCTCCGCTACTGCT
* * * * * **
25602807 TCGGGAGATAAGATCTTCAATCTTCAGTCTGCTCCACTGCAACCTCAGGGAGATAAGACTTGTAT
66 TAGGGAGATAAGATCTTCAATCTTCAGTCTGCTTCATTGCTACCTCAGGAAGATAAGACTAAT-T
* * * * * * * *
25602872 ATTGAGCCTGCTC-CATTGCAACTTCA-AGGAGATAAGGCTGGTGACTTAAATCTGCTCCATTGC
130 CTTCAACCTGCTCTC-TTGCTACCTCAGA-GAGATAAGGCTAGTG-GTAAAATCTGCTCCATTGC
* * ** * * * *
25602935 CGGTACATGGAGATAAGACTCGTCGTCTTTGGTCTGTTCCACTACTGCTTAGGGAAATAAGACCT
192 CGATACATGGAGATAAGATTCACCATCTTTGATCTGCTCCACTACTGCTTAGGGAAATAAGATCT
* * * * *
25603000 GCAATCTTTAGTCTAC-TCCACTGCAACCTCAGGGAGATAAGACT
257 TCAATCTTCAGTCTACTTCC-TTGCTACCTCAGGAAGATAAGACT
25603044 TGTTATGATC
Statistics
Matches: 558, Mismatches: 85, Indels: 18
0.84 0.13 0.03
Matches are distributed among these distances:
350 90 0.16
351 220 0.39
352 142 0.25
353 67 0.12
354 39 0.07
ACGTcount: A:0.28, C:0.25, G:0.18, T:0.30
Consensus pattern (351 bp):
AAATCTGCTCCATTGCCGATACATGGAGATAAGATTCGCCATCTTCGATCTGCTCCGCTACTGCT
TAGGGAGATAAGATCTTCAATCTTCAGTCTGCTTCATTGCTACCTCAGGAAGATAAGACTAATTC
TTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTAGTGGTAAAATCTGCTCCATTGCCGAT
ACATGGAGATAAGATTCACCATCTTTGATCTGCTCCACTACTGCTTAGGGAAATAAGATCTTCAA
TCTTCAGTCTACTTCCTTGCTACCTCAGGAAGATAAGACTACAATCACCAACCTGCTCTCTTGCT
ACCTCAGAGAGATAAGGCCAGTGGTA
Found at i:25603322 original size:64 final size:63
Alignment explanation
Indices: 25603221--25603411 Score: 292
Period size: 64 Copynumber: 3.0 Consensus size: 63
25603211 TTCATGTATC
*
25603221 ATGCTTATGCCAAATAATTAGGATGTTATGATCAAAATGAATCAAATGCTCCTAACTAGATGTG
1 ATGCTTATGTCAAATAATTAGGATG-TATGATCAAAATGAATCAAATGCTCCTAACTAGATGTG
* *
25603285 ATGCTTATGTCAAATAATTAGGATGCTATGATCAAAATGAATCAAATACACCTAACTAGATGTG
1 ATGCTTATGTCAAATAATTAGGATG-TATGATCAAAATGAATCAAATGCTCCTAACTAGATGTG
* * ** *
25603349 ATGTTTATGTCCAATAATTAGGATGTATGATTGAAATGAATCAAATGCTCCTAACTGGATGTG
1 ATGCTTATGTCAAATAATTAGGATGTATGATCAAAATGAATCAAATGCTCCTAACTAGATGTG
25603412 TTATGAATGA
Statistics
Matches: 116, Mismatches: 11, Indels: 1
0.91 0.09 0.01
Matches are distributed among these distances:
63 33 0.28
64 83 0.72
ACGTcount: A:0.37, C:0.13, G:0.18, T:0.32
Consensus pattern (63 bp):
ATGCTTATGTCAAATAATTAGGATGTATGATCAAAATGAATCAAATGCTCCTAACTAGATGTG
Found at i:25604565 original size:21 final size:22
Alignment explanation
Indices: 25604541--25604584 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
25604531 TGATTGATTC
*
25604541 TTTC-TTCTCTTTTTTTTATTT
1 TTTCTTTCTATTTTTTTTATTT
*
25604562 TTTCTTTTTATTTTTTTTATTT
1 TTTCTTTCTATTTTTTTTATTT
25604584 T
1 T
25604585 GATTTTTTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 4 0.20
22 16 0.80
ACGTcount: A:0.07, C:0.09, G:0.00, T:0.84
Consensus pattern (22 bp):
TTTCTTTCTATTTTTTTTATTT
Found at i:25604576 original size:14 final size:13
Alignment explanation
Indices: 25604550--25604593 Score: 61
Period size: 13 Copynumber: 3.2 Consensus size: 13
25604540 CTTTCTTCTC
25604550 TTTTTTTTATTTT
1 TTTTTTTTATTTT
*
25604563 TTCTTTTTATTTT
1 TTTTTTTTATTTT
25604576 TTTTATTTTGATTTT
1 TTTT-TTTT-ATTTT
25604591 TTT
1 TTT
25604594 AAAAAGTCTC
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
13 15 0.56
14 4 0.15
15 8 0.30
ACGTcount: A:0.09, C:0.02, G:0.02, T:0.86
Consensus pattern (13 bp):
TTTTTTTTATTTT
Found at i:25604577 original size:15 final size:15
Alignment explanation
Indices: 25604548--25604593 Score: 56
Period size: 15 Copynumber: 3.0 Consensus size: 15
25604538 TTCTTTCTTC
*
25604548 TCTTTTTTTTATTTTT
1 TCTTTTTATT-TTTTT
25604564 TCTTTTTATTTTTTT
1 TCTTTTTATTTTTTT
* *
25604579 TATTTTGATTTTTTT
1 TCTTTTTATTTTTTT
25604594 AAAAAGTCTC
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
15 18 0.67
16 9 0.33
ACGTcount: A:0.09, C:0.04, G:0.02, T:0.85
Consensus pattern (15 bp):
TCTTTTTATTTTTTT
Found at i:25604591 original size:22 final size:22
Alignment explanation
Indices: 25604550--25604594 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
25604540 CTTTCTTCTC
*
25604550 TTTTTTTTATTTTTTCTTTTTA
1 TTTTTTTTATTTTATCTTTTTA
*
25604572 TTTTTTTTATTTTGATTTTTTTA
1 TTTTTTTTATTTT-ATCTTTTTA
25604595 AAAAGTCTCA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 13 0.65
23 7 0.35
ACGTcount: A:0.11, C:0.02, G:0.02, T:0.84
Consensus pattern (22 bp):
TTTTTTTTATTTTATCTTTTTA
Found at i:25605149 original size:28 final size:29
Alignment explanation
Indices: 25605113--25605175 Score: 83
Period size: 29 Copynumber: 2.2 Consensus size: 29
25605103 TCACCATGAC
* *
25605113 CTTTGTTCTATTGTT-TGCTTTTCCTTTT
1 CTTTTTTCTATTGTTATACTTTTCCTTTT
**
25605141 CTTTTTTCTATTGTTATACTTTTGTTTTT
1 CTTTTTTCTATTGTTATACTTTTCCTTTT
25605170 CTTTTT
1 CTTTTT
25605176 GGCTGCCTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
28 14 0.47
29 16 0.53
ACGTcount: A:0.06, C:0.14, G:0.08, T:0.71
Consensus pattern (29 bp):
CTTTTTTCTATTGTTATACTTTTCCTTTT
Found at i:25611664 original size:14 final size:14
Alignment explanation
Indices: 25611645--25611700 Score: 53
Period size: 14 Copynumber: 4.0 Consensus size: 14
25611635 GGACTTTTAA
25611645 ATTATTTTGGTTTT
1 ATTATTTTGGTTTT
*
25611659 ATTATTTT-ATTATT
1 ATTATTTTGGTT-TT
* *
25611673 TTTATTTTTTGTTTT
1 ATTA-TTTTGGTTTT
25611688 ATT-TTTTGGTTTT
1 ATTATTTTGGTTTT
25611701 GGTTTTGGTG
Statistics
Matches: 34, Mismatches: 5, Indels: 7
0.74 0.11 0.15
Matches are distributed among these distances:
13 11 0.32
14 13 0.38
15 8 0.24
16 2 0.06
ACGTcount: A:0.14, C:0.00, G:0.09, T:0.77
Consensus pattern (14 bp):
ATTATTTTGGTTTT
Found at i:25611677 original size:17 final size:18
Alignment explanation
Indices: 25611655--25611693 Score: 53
Period size: 17 Copynumber: 2.2 Consensus size: 18
25611645 ATTATTTTGG
25611655 TTTTATTATTT-TATTAT
1 TTTTATTATTTGTATTAT
* *
25611672 TTTTATTTTTTGTTTTAT
1 TTTTATTATTTGTATTAT
25611690 TTTT
1 TTTT
25611694 TGGTTTTGGT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 10 0.53
18 9 0.47
ACGTcount: A:0.15, C:0.00, G:0.03, T:0.82
Consensus pattern (18 bp):
TTTTATTATTTGTATTAT
Found at i:25611689 original size:12 final size:13
Alignment explanation
Indices: 25611672--25611700 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
25611662 ATTTTATTAT
25611672 TTTTATTTTTT-G
1 TTTTATTTTTTGG
25611684 TTTTATTTTTTGG
1 TTTTATTTTTTGG
25611697 TTTT
1 TTTT
25611701 GGTTTTGGTG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 11 0.69
13 5 0.31
ACGTcount: A:0.07, C:0.00, G:0.10, T:0.83
Consensus pattern (13 bp):
TTTTATTTTTTGG
Found at i:25614004 original size:26 final size:26
Alignment explanation
Indices: 25613968--25614019 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
25613958 GTTCTTGGAA
25613968 GCCTACCTCCGAAATTTAATGTCGTC
1 GCCTACCTCCGAAATTTAATGTCGTC
25613994 GCCTACCTCCGAAATTTAATGTCGTC
1 GCCTACCTCCGAAATTTAATGTCGTC
25614020 CTTACCTTAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.23, C:0.31, G:0.15, T:0.31
Consensus pattern (26 bp):
GCCTACCTCCGAAATTTAATGTCGTC
Found at i:25622526 original size:29 final size:29
Alignment explanation
Indices: 25622465--25622527 Score: 74
Period size: 29 Copynumber: 2.2 Consensus size: 29
25622455 ACACGATAAT
***
25622465 ATAAATGACTAAAATGTAACATTTTAAAC
1 ATAAATGACTAAAATGTAACATGAGAAAC
*
25622494 ATAAATGACTAAAATGTAACCTGAGACAA-
1 ATAAATGACTAAAATGTAACATGAGA-AAC
25622523 ATAAA
1 ATAAA
25622528 AGTGACTATT
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
29 27 0.93
30 2 0.07
ACGTcount: A:0.54, C:0.11, G:0.10, T:0.25
Consensus pattern (29 bp):
ATAAATGACTAAAATGTAACATGAGAAAC
Found at i:25629720 original size:49 final size:49
Alignment explanation
Indices: 25629652--25629774 Score: 219
Period size: 49 Copynumber: 2.5 Consensus size: 49
25629642 TACATATATG
*
25629652 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTACGTATA
1 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTACGTATA
*
25629701 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTACGTATA
*
25629750 TGTGATGAGGCCTAATGGCCAATGT
1 TGTGATGAGGCCTAATGGCCGATGT
25629775 AAAATATATG
Statistics
Matches: 71, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 71 1.00
ACGTcount: A:0.27, C:0.11, G:0.33, T:0.29
Consensus pattern (49 bp):
TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTACGTATA
Found at i:25629920 original size:37 final size:37
Alignment explanation
Indices: 25629877--25629954 Score: 156
Period size: 37 Copynumber: 2.1 Consensus size: 37
25629867 GTTCCGGGCG
25629877 AGACCCGATGACTACGTGTGGAGATTATGACCGGGTA
1 AGACCCGATGACTACGTGTGGAGATTATGACCGGGTA
25629914 AGACCCGATGACTACGTGTGGAGATTATGACCGGGTA
1 AGACCCGATGACTACGTGTGGAGATTATGACCGGGTA
25629951 AGAC
1 AGAC
25629955 TTCTTTTATA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 41 1.00
ACGTcount: A:0.28, C:0.19, G:0.32, T:0.21
Consensus pattern (37 bp):
AGACCCGATGACTACGTGTGGAGATTATGACCGGGTA
Found at i:25632031 original size:29 final size:29
Alignment explanation
Indices: 25631964--25632475 Score: 893
Period size: 29 Copynumber: 17.7 Consensus size: 29
25631954 CGAATGATTA
* * *
25631964 GAGGCACTGTGTGTGC-AAATTCCGTTAACC
1 GAGGCACTGTGTGTGCGAGA-TCAG-TAATC
*
25631994 GAGGCACTATGTGTGCGAGATCAGTAATC
1 GAGGCACTGTGTGTGCGAGATCAGTAATC
*
25632023 GAGGCACTATGTGTGCGAGATCAGTAATC
1 GAGGCACTGTGTGTGCGAGATCAGTAATC
25632052 GAGGCACTGTGTGTGCGAGATCAGTAATC
1 GAGGCACTGTGTGTGCGAGATCAGTAATC
25632081 GAGGCACTGTGTGTGCGAGATCAGTAATC
1 GAGGCACTGTGTGTGCGAGATCAGTAATC
25632110 GAGGCACTGTGTGTGCGAGATCAGTAATC
1 GAGGCACTGTGTGTGCGAGATCAGTAATC
25632139 GAGGCACTGTGTGTGCGAGATCAGTAATC
1 GAGGCACTGTGTGTGCGAGATCAGTAATC
25632168 GAGGCACTGTGTGTGCGAGATCAGTAATC
1 GAGGCACTGTGTGTGCGAGATCAGTAATC
25632197 GAGGCACTGTGTGTGCGAGATCAGTAATC
1 GAGGCACTGTGTGTGCGAGATCAGTAATC
25632226 GAGGCACTGTGTGTG-GAGATCAGTAATC
1 GAGGCACTGTGTGTGCGAGATCAGTAATC
25632254 GAGGCACTGTGTGTGCGAGATCAGTAATC
1 GAGGCACTGTGTGTGCGAGATCAGTAATC
25632283 GAGGCACTGTGTGTGCGAGATCAGTAATC
1 GAGGCACTGTGTGTGCGAGATCAGTAATC
25632312 GAGGCACTGTGTGTGCGAGATCAGTAATC
1 GAGGCACTGTGTGTGCGAGATCAGTAATC
25632341 GAGGCACTGTGTGTGCGAGATCAGTAATC
1 GAGGCACTGTGTGTGCGAGATCAGTAATC
25632370 GAGGCACTGTGTGTGCGAGATCAGTAATC
1 GAGGCACTGTGTGTGCGAGATCAGTAATC
* * *
25632399 GAGGCACTATGTGTGCGAAATCAGTAATT
1 GAGGCACTGTGTGTGCGAGATCAGTAATC
* *
25632428 GAGGCACTATGTGTGCGAGATCAGTAATT
1 GAGGCACTGTGTGTGCGAGATCAGTAATC
*
25632457 GAGGCACTGTGTGTACGAG
1 GAGGCACTGTGTGTGCGAG
25632476 TTTTTCAACA
Statistics
Matches: 469, Mismatches: 11, Indels: 5
0.97 0.02 0.01
Matches are distributed among these distances:
28 28 0.06
29 421 0.90
30 18 0.04
31 2 0.00
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.25
Consensus pattern (29 bp):
GAGGCACTGTGTGTGCGAGATCAGTAATC
Found at i:25633057 original size:40 final size:41
Alignment explanation
Indices: 25632959--25633057 Score: 114
Period size: 41 Copynumber: 2.4 Consensus size: 41
25632949 TTCGAATGGT
* ** * *
25632959 ATCCGGGCTAAGTCCCGAAGGCGTTTGTGCTAAGTTACTAA
1 ATCCGGGCTATGTCCCGAAGGCAATTGTGCTAAATCACTAA
25633000 ATCCGGGCTAAT-TCCCGAAGGCAATTGTGC-AAATCACTATA
1 ATCCGGGCT-ATGTCCCGAAGGCAATTGTGCTAAATCACTA-A
25633041 A-CCGGGCTATGTCCCGA
1 ATCCGGGCTATGTCCCGA
25633058 GAACAATCGA
Statistics
Matches: 50, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
39 2 0.04
40 20 0.40
41 27 0.54
42 1 0.02
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.24
Consensus pattern (41 bp):
ATCCGGGCTATGTCCCGAAGGCAATTGTGCTAAATCACTAA
Found at i:25636224 original size:49 final size:49
Alignment explanation
Indices: 25636156--25636278 Score: 219
Period size: 49 Copynumber: 2.5 Consensus size: 49
25636146 TACATATATG
*
25636156 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTACGTATA
1 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTACGTATA
*
25636205 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTACGTATA
*
25636254 TGTGATGAGGCCTAATGGCCAATGT
1 TGTGATGAGGCCTAATGGCCGATGT
25636279 AAAATATATG
Statistics
Matches: 71, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 71 1.00
ACGTcount: A:0.27, C:0.11, G:0.33, T:0.29
Consensus pattern (49 bp):
TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTACGTATA
Found at i:25636424 original size:37 final size:37
Alignment explanation
Indices: 25636381--25636458 Score: 156
Period size: 37 Copynumber: 2.1 Consensus size: 37
25636371 GTTCCGGGCG
25636381 AGACCCGATGACTACGTGTGGAGATTATGACCGGGTA
1 AGACCCGATGACTACGTGTGGAGATTATGACCGGGTA
25636418 AGACCCGATGACTACGTGTGGAGATTATGACCGGGTA
1 AGACCCGATGACTACGTGTGGAGATTATGACCGGGTA
25636455 AGAC
1 AGAC
25636459 TTCTTTTATA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 41 1.00
ACGTcount: A:0.28, C:0.19, G:0.32, T:0.21
Consensus pattern (37 bp):
AGACCCGATGACTACGTGTGGAGATTATGACCGGGTA
Found at i:25655876 original size:24 final size:24
Alignment explanation
Indices: 25655807--25655877 Score: 58
Period size: 24 Copynumber: 2.9 Consensus size: 24
25655797 TATTTATTTT
*
25655807 AATTTAAA-AGATTATATTTATATAA
1 AATTTAAATAG-TTAGA-TTATATAA
* *
25655832 AATTT-TATAATTCAGATTATATAA
1 AATTTAAATAGTT-AGATTATATAA
25655856 AATTTAAATAGTTA-ATATATAT
1 AATTTAAATAGTTAGAT-TATAT
25655878 TCAAATTATT
Statistics
Matches: 37, Mismatches: 5, Indels: 9
0.73 0.10 0.18
Matches are distributed among these distances:
23 2 0.05
24 22 0.59
25 13 0.35
ACGTcount: A:0.49, C:0.01, G:0.04, T:0.45
Consensus pattern (24 bp):
AATTTAAATAGTTAGATTATATAA
Found at i:25685822 original size:38 final size:39
Alignment explanation
Indices: 25685734--25685875 Score: 232
Period size: 39 Copynumber: 3.6 Consensus size: 39
25685724 ACCCCACAAA
* *
25685734 GCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATT
1 GCCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATT
* *
25685774 GCCTTCGGGCTTAGCCCGGATATCATAGCTCGC-CCATT
1 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
25685812 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
25685851 GCCTTCGGGCTTAGCCCGGATATCA
1 GCCTTCGGGCTTAGCCCGGATATCA
25685876 CTCATTCATA
Statistics
Matches: 95, Mismatches: 6, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
38 36 0.38
39 50 0.53
40 9 0.09
ACGTcount: A:0.21, C:0.32, G:0.22, T:0.25
Consensus pattern (39 bp):
GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
Found at i:25693710 original size:39 final size:39
Alignment explanation
Indices: 25693632--25693774 Score: 214
Period size: 39 Copynumber: 3.6 Consensus size: 39
25693622 CCACACAAAG
* * * *
25693632 GCCTTCGGGACTTAACCCGGATATCACAATTTGCACAATT
1 GCCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATT
*
25693672 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCCCAATT
1 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
* *
25693711 GTCTTTGGGCTTAGCCCGGATATCATAACTCGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
25693750 GCCTTCGGGCTTAGCCCGGATATCA
1 GCCTTCGGGCTTAGCCCGGATATCA
25693775 CTCGAACATT
Statistics
Matches: 93, Mismatches: 10, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
39 84 0.90
40 9 0.10
ACGTcount: A:0.22, C:0.29, G:0.21, T:0.27
Consensus pattern (39 bp):
GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
Found at i:25701569 original size:26 final size:26
Alignment explanation
Indices: 25701531--25701665 Score: 218
Period size: 26 Copynumber: 5.2 Consensus size: 26
25701521 TGATACAAAT
25701531 TGATAATAGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
* *
25701557 TGATAATATGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
25701583 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
25701609 TGATAATGGGTTAGGTAAATG-TTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
25701634 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
25701660 TGATAA
1 TGATAA
25701666 GAATTTCATG
Statistics
Matches: 103, Mismatches: 5, Indels: 2
0.94 0.05 0.02
Matches are distributed among these distances:
25 24 0.23
26 79 0.77
ACGTcount: A:0.34, C:0.05, G:0.24, T:0.37
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTTCA
Found at i:25703322 original size:27 final size:27
Alignment explanation
Indices: 25703281--25703393 Score: 129
Period size: 27 Copynumber: 4.2 Consensus size: 27
25703271 GAGGAAGCGT
*
25703281 TCTGGTGGCTATGCCACAAATATCTGA
1 TCTGGTGGCTCTGCCACAAATATCTGA
* *
25703308 TCTGGTGGCTCTGCCACATATATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
* *
25703335 TCTGGTGGCTCTGCCACGATTATCTGTA
1 TCTGGTGGCTCTGCCACAAATATCTG-A
* * * *
25703363 TCTGGTGACTCTGTCAC-ATTATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
25703389 TCTGG
1 TCTGG
25703394 CAGCCATGCT
Statistics
Matches: 75, Mismatches: 10, Indels: 3
0.85 0.11 0.03
Matches are distributed among these distances:
26 5 0.07
27 55 0.73
28 15 0.20
ACGTcount: A:0.17, C:0.24, G:0.23, T:0.36
Consensus pattern (27 bp):
TCTGGTGGCTCTGCCACAAATATCTGA
Found at i:25703386 original size:54 final size:54
Alignment explanation
Indices: 25703279--25703393 Score: 169
Period size: 54 Copynumber: 2.1 Consensus size: 54
25703269 TGGAGGAAGC
*
25703279 GTTCTGGTGGCTATGCCACAAATATCTGATCTGGTGGCTCTGCCACATATATCT
1 GTTCTGGTGGCTATGCCACAAATATCTGATCTGGTGACTCTGCCACATATATCT
* * * *
25703333 GTTCTGGTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCT
1 GTTCTGGTGGCTATGCCACAAATATCTG-ATCTGGTGACTCTGCCACATATATCT
25703387 GTTCTGG
1 GTTCTGG
25703394 CAGCCATGCT
Statistics
Matches: 55, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
54 37 0.67
55 18 0.33
ACGTcount: A:0.17, C:0.23, G:0.23, T:0.37
Consensus pattern (54 bp):
GTTCTGGTGGCTATGCCACAAATATCTGATCTGGTGACTCTGCCACATATATCT
Found at i:25703479 original size:19 final size:22
Alignment explanation
Indices: 25703455--25703494 Score: 59
Period size: 19 Copynumber: 2.0 Consensus size: 22
25703445 CTCCCCACAC
25703455 GGTGTA-A-GGTTGG-TATGGG
1 GGTGTATACGGTTGGATATGGG
25703474 GGTGTATACGGTTGGATATGG
1 GGTGTATACGGTTGGATATGG
25703495 TTGGGTTTCT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 6 0.33
20 1 0.06
21 6 0.33
22 5 0.28
ACGTcount: A:0.17, C:0.03, G:0.47, T:0.33
Consensus pattern (22 bp):
GGTGTATACGGTTGGATATGGG
Found at i:25707957 original size:26 final size:25
Alignment explanation
Indices: 25707874--25708057 Score: 307
Period size: 26 Copynumber: 7.2 Consensus size: 25
25707864 TGATACAAAT
25707874 TGATAATAGGTTAGGTAAATGTTCA
1 TGATAATAGGTTAGGTAAATGTTCA
25707899 TGATAATA-GTTAGGTAAATGTTCA
1 TGATAATAGGTTAGGTAAATGTTCA
25707923 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTT-CA
25707949 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTT-CA
25707975 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTT-CA
*
25708001 TGATAATGGGTTAGGTAAATGTTCA
1 TGATAATAGGTTAGGTAAATGTTCA
*
25708026 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATG-TTCA
25708052 TGATAA
1 TGATAA
25708058 GAATTTCATG
Statistics
Matches: 155, Mismatches: 1, Indels: 5
0.96 0.01 0.03
Matches are distributed among these distances:
24 24 0.15
25 45 0.29
26 86 0.55
ACGTcount: A:0.35, C:0.05, G:0.24, T:0.36
Consensus pattern (25 bp):
TGATAATAGGTTAGGTAAATGTTCA
Found at i:25709215 original size:8 final size:8
Alignment explanation
Indices: 25709202--25709238 Score: 65
Period size: 8 Copynumber: 4.6 Consensus size: 8
25709192 CTAGATTGGC
25709202 AAAAGCCG
1 AAAAGCCG
25709210 AAAAGCCG
1 AAAAGCCG
25709218 AAAAGCCG
1 AAAAGCCG
*
25709226 AAATGCCG
1 AAAAGCCG
25709234 AAAAG
1 AAAAG
25709239 TCGGTATTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
8 27 1.00
ACGTcount: A:0.51, C:0.22, G:0.24, T:0.03
Consensus pattern (8 bp):
AAAAGCCG
Found at i:25709696 original size:27 final size:27
Alignment explanation
Indices: 25709655--25709768 Score: 113
Period size: 27 Copynumber: 4.2 Consensus size: 27
25709645 GAGGAAGCGT
*
25709655 TCTGGTGGCTATGCCACAAATATCTGA
1 TCTGGTGGCTCTGCCACAAATATCTGA
* * *
25709682 TCTGATGGCTCTGCCACATATATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
* * *
25709709 TCTGGTGGCTCTGCCACGATTATCTTTA
1 TCTGGTGGCTCTGCCACAAATATC-TGA
* * * *
25709737 TCTGGTGACTCTGTCAC-ATTATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
25709763 TCTGGT
1 TCTGGT
25709769 AGCCATGCTG
Statistics
Matches: 72, Mismatches: 14, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
26 7 0.10
27 49 0.68
28 16 0.22
ACGTcount: A:0.18, C:0.24, G:0.21, T:0.38
Consensus pattern (27 bp):
TCTGGTGGCTCTGCCACAAATATCTGA
Found at i:25709760 original size:54 final size:54
Alignment explanation
Indices: 25709653--25709768 Score: 153
Period size: 54 Copynumber: 2.1 Consensus size: 54
25709643 TCGAGGAAGC
*
25709653 GTTCTGGTGGCTATGCCACAAATATCTGATCTGATGGCTCTGCCACATATATCT
1 GTTCTGGTGGCTATGCCACAAATATCTGATCTGATGACTCTGCCACATATATCT
* * * * * *
25709707 GTTCTGGTGGCTCTGCCACGATTATCTTTATCTGGTGACTCTGTCACAT-TATCT
1 GTTCTGGTGGCTATGCCACAAATATC-TGATCTGATGACTCTGCCACATATATCT
25709761 GTTCTGGT
1 GTTCTGGT
25709769 AGCCATGCTG
Statistics
Matches: 54, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
54 36 0.67
55 18 0.33
ACGTcount: A:0.17, C:0.23, G:0.22, T:0.38
Consensus pattern (54 bp):
GTTCTGGTGGCTATGCCACAAATATCTGATCTGATGACTCTGCCACATATATCT
Found at i:25709853 original size:19 final size:22
Alignment explanation
Indices: 25709829--25709868 Score: 59
Period size: 19 Copynumber: 2.0 Consensus size: 22
25709819 CTCCCCACAC
25709829 GGTGTA-A-GGTTGG-TATGGG
1 GGTGTATACGGTTGGATATGGG
25709848 GGTGTATACGGTTGGATATGG
1 GGTGTATACGGTTGGATATGG
25709869 TTGGGTTTCT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 6 0.33
20 1 0.06
21 6 0.33
22 5 0.28
ACGTcount: A:0.17, C:0.03, G:0.47, T:0.33
Consensus pattern (22 bp):
GGTGTATACGGTTGGATATGGG
Found at i:25711567 original size:20 final size:20
Alignment explanation
Indices: 25711531--25711568 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
25711521 TTATTTAATT
*
25711531 TTTAATTTTAGTCTTATTAA
1 TTTAATTTTAGTATTATTAA
25711551 TTTAATATTTA-TATTATT
1 TTTAAT-TTTAGTATTATT
25711569 TTGGATAGTT
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
20 12 0.75
21 4 0.25
ACGTcount: A:0.32, C:0.03, G:0.03, T:0.63
Consensus pattern (20 bp):
TTTAATTTTAGTATTATTAA
Found at i:25712931 original size:6 final size:6
Alignment explanation
Indices: 25712920--25712946 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
25712910 ATATAATTAA
25712920 AATATT AATATT AATATT AATATT AAT
1 AATATT AATATT AATATT AATATT AAT
25712947 GTATATATAC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (6 bp):
AATATT
Found at i:25715620 original size:17 final size:17
Alignment explanation
Indices: 25715598--25715631 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
25715588 ATGATTTTGG
25715598 AATGATTTAATGGTGTT
1 AATGATTTAATGGTGTT
25715615 AATGATTTAATGGTGTT
1 AATGATTTAATGGTGTT
25715632 TATTGTTATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.29, C:0.00, G:0.24, T:0.47
Consensus pattern (17 bp):
AATGATTTAATGGTGTT
Found at i:25716139 original size:29 final size:30
Alignment explanation
Indices: 25716097--25716175 Score: 115
Period size: 29 Copynumber: 2.7 Consensus size: 30
25716087 GGTATGTGTA
* *
25716097 TATATACAATATATATGCATGGGTTTTG-T
1 TATATATAATATATATGCATGGGTCTTGAT
**
25716126 TATATATAATATATATGTGTGGGTCTTGAT
1 TATATATAATATATATGCATGGGTCTTGAT
25716156 TATATATAATATATATGCAT
1 TATATATAATATATATGCAT
25716176 ATATGAGTCT
Statistics
Matches: 43, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
29 24 0.56
30 19 0.44
ACGTcount: A:0.34, C:0.05, G:0.15, T:0.46
Consensus pattern (30 bp):
TATATATAATATATATGCATGGGTCTTGAT
Found at i:25716478 original size:18 final size:18
Alignment explanation
Indices: 25716419--25716481 Score: 63
Period size: 18 Copynumber: 3.5 Consensus size: 18
25716409 CTTGGCTAAT
* *
25716419 TATATTATTATGGCGAAC
1 TATATTAATATGGTGAAC
* * **
25716437 TATGTTAATTTGGTGATT
1 TATATTAATATGGTGAAC
*
25716455 TGTATTAATATGGTGAAC
1 TATATTAATATGGTGAAC
25716473 TATATTAAT
1 TATATTAAT
25716482 TTGCCAAATT
Statistics
Matches: 33, Mismatches: 12, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
18 33 1.00
ACGTcount: A:0.32, C:0.05, G:0.17, T:0.46
Consensus pattern (18 bp):
TATATTAATATGGTGAAC
Found at i:25716685 original size:14 final size:14
Alignment explanation
Indices: 25716666--25716692 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
25716656 ACCATGCTCT
25716666 ATTGCGAATTGTGA
1 ATTGCGAATTGTGA
25716680 ATTGCGAATTGTG
1 ATTGCGAATTGTG
25716693 CTATAATGTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.26, C:0.07, G:0.30, T:0.37
Consensus pattern (14 bp):
ATTGCGAATTGTGA
Found at i:25717132 original size:17 final size:17
Alignment explanation
Indices: 25717112--25717194 Score: 82
Period size: 17 Copynumber: 4.9 Consensus size: 17
25717102 TGATGTTGTA
25717112 TGAATGAATTATTATAT
1 TGAATGAATTATTATAT
* *
25717129 TGAATGAACTGTTATAT
1 TGAATGAATTATTATAT
*
25717146 TGTATGAACTT-TTATAT
1 TGAATGAA-TTATTATAT
25717163 TGAATG-ATCTATTAT-T
1 TGAATGAAT-TATTATAT
*
25717179 ATGCATGAATTATTAT
1 -TGAATGAATTATTAT
25717195 TTTATGTGAA
Statistics
Matches: 55, Mismatches: 6, Indels: 10
0.77 0.08 0.14
Matches are distributed among these distances:
15 1 0.02
16 3 0.05
17 48 0.87
18 3 0.05
ACGTcount: A:0.35, C:0.05, G:0.13, T:0.47
Consensus pattern (17 bp):
TGAATGAATTATTATAT
Found at i:25717187 original size:34 final size:33
Alignment explanation
Indices: 25717110--25717194 Score: 100
Period size: 34 Copynumber: 2.5 Consensus size: 33
25717100 TATGATGTTG
*
25717110 TATGAATGAATTATTATATTGAATGAACTGTTA
1 TATGAATGAATTATTATATTGAATGAACTATTA
* *
25717143 TATTGTATGAACTT-TTATATTGAATGATCTATTA
1 TA-TGAATGAA-TTATTATATTGAATGAACTATTA
*
25717177 TTATGCATGAATTATTAT
1 -TATGAATGAATTATTAT
25717195 TTTATGTGAA
Statistics
Matches: 44, Mismatches: 4, Indels: 7
0.80 0.07 0.13
Matches are distributed among these distances:
33 4 0.09
34 36 0.82
35 4 0.09
ACGTcount: A:0.35, C:0.05, G:0.13, T:0.47
Consensus pattern (33 bp):
TATGAATGAATTATTATATTGAATGAACTATTA
Found at i:25719911 original size:34 final size:34
Alignment explanation
Indices: 25719873--25719944 Score: 85
Period size: 34 Copynumber: 2.1 Consensus size: 34
25719863 ATATATTATT
*
25719873 TAATTTT-TTATTGTTTAGTTA-AAATTATAGAATA
1 TAATTTTCTAATTGTTTAGTTAGAAATT-TA-AATA
* *
25719907 TAATTTTCTAATTTTTTAGTTAGACATTTAAATA
1 TAATTTTCTAATTGTTTAGTTAGAAATTTAAATA
25719941 TAAT
1 TAAT
25719945 AATAACATTT
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
34 15 0.45
35 14 0.42
36 4 0.12
ACGTcount: A:0.38, C:0.03, G:0.07, T:0.53
Consensus pattern (34 bp):
TAATTTTCTAATTGTTTAGTTAGAAATTTAAATA
Found at i:25735167 original size:21 final size:20
Alignment explanation
Indices: 25735143--25735185 Score: 59
Period size: 21 Copynumber: 2.1 Consensus size: 20
25735133 AAACTTGTAT
*
25735143 ATCTATCAACAAGCATTCAAA
1 ATCTATCAACAACCA-TCAAA
*
25735164 ATCTATCATCAACCATCAAA
1 ATCTATCAACAACCATCAAA
25735184 AT
1 AT
25735186 ACATGCTTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 7 0.35
21 13 0.65
ACGTcount: A:0.47, C:0.26, G:0.02, T:0.26
Consensus pattern (20 bp):
ATCTATCAACAACCATCAAA
Found at i:25740050 original size:6 final size:6
Alignment explanation
Indices: 25740039--25740076 Score: 53
Period size: 6 Copynumber: 6.5 Consensus size: 6
25740029 TACCGTATTT
25740039 AATGAA AATGAA AATGAAA AAT-AA AAT-AA AATGAA AAT
1 AATGAA AATGAA AATG-AA AATGAA AATGAA AATGAA AAT
25740077 ATAAATGTCG
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
5 10 0.33
6 15 0.50
7 5 0.17
ACGTcount: A:0.71, C:0.00, G:0.11, T:0.18
Consensus pattern (6 bp):
AATGAA
Found at i:25740071 original size:17 final size:19
Alignment explanation
Indices: 25740043--25740081 Score: 64
Period size: 17 Copynumber: 2.2 Consensus size: 19
25740033 GTATTTAATG
25740043 AAAATGAAAATGAAAA-AT
1 AAAATGAAAATGAAAATAT
25740061 AAAAT-AAAATGAAAATAT
1 AAAATGAAAATGAAAATAT
25740079 AAA
1 AAA
25740082 TGTCGAAACC
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
17 10 0.50
18 10 0.50
ACGTcount: A:0.74, C:0.00, G:0.08, T:0.18
Consensus pattern (19 bp):
AAAATGAAAATGAAAATAT
Found at i:25742173 original size:26 final size:26
Alignment explanation
Indices: 25742144--25742197 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
25742134 GTGTGGCTAT
25742144 TGAGCCAAAATTGTAAATATGATAAG
1 TGAGCCAAAATTGTAAATATGATAAG
25742170 TGAGCCAAAATTGTAAATATGATAAG
1 TGAGCCAAAATTGTAAATATGATAAG
25742196 TG
1 TG
25742198 TCTTGTATTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.44, C:0.07, G:0.20, T:0.28
Consensus pattern (26 bp):
TGAGCCAAAATTGTAAATATGATAAG
Found at i:25742379 original size:40 final size:40
Alignment explanation
Indices: 25742283--25742501 Score: 251
Period size: 40 Copynumber: 5.5 Consensus size: 40
25742273 TGAATGGTAT
* * * * *
25742283 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGATTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAAA
* *
25742324 CCGGG-TCAATTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGCT-AAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* *
25742364 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* * *
25742404 CCGGGTTAAGTCCTGAAGGCATTTGTGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* * * * *
25742444 CTGGGCTAATTCCCGAAGGCAATTGTGCGAATTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
*
25742484 CCGGGCTATGTCCCGAAG
1 CCGGGCTAAGTCCCGAAG
25742502 ACAATGGAGC
Statistics
Matches: 154, Mismatches: 22, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
40 129 0.84
41 25 0.16
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
Found at i:25742497 original size:120 final size:121
Alignment explanation
Indices: 25742283--25742501 Score: 298
Period size: 120 Copynumber: 1.8 Consensus size: 121
25742273 TGAATGGTAT
* * *
25742283 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGATTAAATCCGGGTCAATTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCAATT
* *
25742348 GTGCGAGTTACCAAAACCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
66 GTGCGAATTACCAAAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
* * * * *
25742404 CCGGGTTAAGTCCTGAAGGCATTTGTGC-GAGTTACTAAATCTGGG-CTAATTCCCGAAGGCAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGGTC-AATTCCCGAAGGCAAT
* * *
25742467 TGTGCGAATTACTATAACCGGGCTATGTCCCGAAG
65 TGTGCGAATTACCAAAACCGGGCTAAGTCCCGAAG
25742502 ACAATGGAGC
Statistics
Matches: 84, Mismatches: 13, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
119 1 0.01
120 58 0.69
121 25 0.30
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (121 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCAATT
GTGCGAATTACCAAAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
Found at i:25744876 original size:22 final size:21
Alignment explanation
Indices: 25744846--25744930 Score: 61
Period size: 19 Copynumber: 4.2 Consensus size: 21
25744836 TACAAATTAA
25744846 ATCTCCAAGATTACAAGATCAT
1 ATCTCCAAGATTAC-AGATCAT
* * *
25744868 ATCTTCAAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
* *
25744889 ATCT--AAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
* * *
25744908 AACT--AAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
25744927 ATCT
1 ATCT
25744931 AAGATTGTAT
Statistics
Matches: 58, Mismatches: 5, Indels: 3
0.88 0.08 0.05
Matches are distributed among these distances:
19 36 0.62
21 10 0.17
22 12 0.21
ACGTcount: A:0.38, C:0.19, G:0.09, T:0.34
Consensus pattern (21 bp):
ATCTCCAAGATTACAGATCAT
Found at i:25744898 original size:19 final size:19
Alignment explanation
Indices: 25744863--25744979 Score: 184
Period size: 19 Copynumber: 6.2 Consensus size: 19
25744853 AGATTACAAG
25744863 ATCATATCTTCAAGATTGCAT
1 ATCATATC-T-AAGATTGCAT
25744884 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
*
25744903 ATCATAACTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
25744922 ATCATATCTAAGATTG--T
1 ATCATATCTAAGATTGCAT
*
25744939 ATGATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
25744958 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
25744977 ATC
1 ATC
25744980 CTTAAAGATT
Statistics
Matches: 90, Mismatches: 4, Indels: 6
0.90 0.04 0.06
Matches are distributed among these distances:
17 16 0.18
19 65 0.72
20 1 0.01
21 8 0.09
ACGTcount: A:0.37, C:0.15, G:0.11, T:0.37
Consensus pattern (19 bp):
ATCATATCTAAGATTGCAT
Found at i:25744952 original size:55 final size:58
Alignment explanation
Indices: 25744863--25744979 Score: 186
Period size: 55 Copynumber: 2.1 Consensus size: 58
25744853 AGATTACAAG
25744863 ATCATATCTTCAAGATTGCATATCATATCTAAGATTGCATATCATAACTAAGATTGCAT
1 ATCATATCTTCAAGATTG-ATATCATATCTAAGATTGCATATCATAACTAAGATTGCAT
* *
25744922 ATCATATC-T-AAGATTG-TATGATATCTAAGATTGCATATCATATCTAAGATTGCAT
1 ATCATATCTTCAAGATTGATATCATATCTAAGATTGCATATCATAACTAAGATTGCAT
25744977 ATC
1 ATC
25744980 CTTAAAGATT
Statistics
Matches: 56, Mismatches: 2, Indels: 4
0.90 0.03 0.06
Matches are distributed among these distances:
55 40 0.71
57 7 0.12
58 1 0.02
59 8 0.14
ACGTcount: A:0.37, C:0.15, G:0.11, T:0.37
Consensus pattern (58 bp):
ATCATATCTTCAAGATTGATATCATATCTAAGATTGCATATCATAACTAAGATTGCAT
Found at i:25744957 original size:36 final size:37
Alignment explanation
Indices: 25744874--25744979 Score: 169
Period size: 36 Copynumber: 2.8 Consensus size: 37
25744864 TCATATCTTC
25744874 AAGATTGCATATCATATCTAAGATTGCATATCATAACT
1 AAGATTGCATATCATATCTAAGATTG-ATATCATAACT
* *
25744912 AAGATTGCATATCATATCTAAGATTG-TATGATATCT
1 AAGATTGCATATCATATCTAAGATTGATATCATAACT
25744948 AAGATTGCATATCATATCTAAGATTGCATATC
1 AAGATTGCATATCATATCTAAGATTG-ATATC
25744980 CTTAAAGATT
Statistics
Matches: 63, Mismatches: 3, Indels: 4
0.90 0.04 0.06
Matches are distributed among these distances:
36 34 0.54
38 29 0.46
ACGTcount: A:0.38, C:0.14, G:0.12, T:0.36
Consensus pattern (37 bp):
AAGATTGCATATCATATCTAAGATTGATATCATAACT
Found at i:25744988 original size:36 final size:35
Alignment explanation
Indices: 25744865--25744989 Score: 144
Period size: 36 Copynumber: 3.4 Consensus size: 35
25744855 ATTACAAGAT
* *
25744865 CATATCTTCAAGATTGCATATCATATCTAAGATTG
1 CATATATTAAAGATTGCATATCATATCTAAGATTG
*
25744900 CATATCATAACTAAGATTGCATATCATATCTAAGATTG
1 CATAT-ATTA--AAGATTGCATATCATATCTAAGATTG
*
25744938 TATGATATCT-AAGATTGCATATCATATCTAAGATTG
1 CAT-ATAT-TAAAGATTGCATATCATATCTAAGATTG
*
25744974 CATATCCTTAAAGATT
1 CATAT-ATTAAAGATT
25744990 ATATTTCCAT
Statistics
Matches: 76, Mismatches: 7, Indels: 13
0.79 0.07 0.14
Matches are distributed among these distances:
35 8 0.11
36 36 0.47
38 30 0.39
39 2 0.03
ACGTcount: A:0.37, C:0.15, G:0.11, T:0.37
Consensus pattern (35 bp):
CATATATTAAAGATTGCATATCATATCTAAGATTG
Found at i:25752371 original size:18 final size:20
Alignment explanation
Indices: 25752330--25752372 Score: 54
Period size: 19 Copynumber: 2.2 Consensus size: 20
25752320 TATGTATATA
*
25752330 ATTATAAGATAATTATTTAT
1 ATTATAAGATAATTATTTAG
*
25752350 ATTATAATA-AATTATTT-G
1 ATTATAAGATAATTATTTAG
25752368 ATTAT
1 ATTAT
25752373 GTTTAACATC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
18 5 0.24
19 8 0.38
20 8 0.38
ACGTcount: A:0.44, C:0.00, G:0.05, T:0.51
Consensus pattern (20 bp):
ATTATAAGATAATTATTTAG
Found at i:25752562 original size:16 final size:16
Alignment explanation
Indices: 25752541--25752575 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
25752531 CTCAATTTAA
25752541 CTATTCATTTGCTTTT
1 CTATTCATTTGCTTTT
25752557 CTATTCATTTGCTTTT
1 CTATTCATTTGCTTTT
25752573 CTA
1 CTA
25752576 AAAAATTAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.14, C:0.20, G:0.06, T:0.60
Consensus pattern (16 bp):
CTATTCATTTGCTTTT
Found at i:25752951 original size:19 final size:20
Alignment explanation
Indices: 25752929--25752966 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 20
25752919 ATGAACATTT
*
25752929 ACATAATCATTTAA-CATAC
1 ACATAATAATTTAATCATAC
*
25752948 ACATCATAATTTAATCATA
1 ACATAATAATTTAATCATA
25752967 TTGTCCCTCT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
19 12 0.75
20 4 0.25
ACGTcount: A:0.47, C:0.18, G:0.00, T:0.34
Consensus pattern (20 bp):
ACATAATAATTTAATCATAC
Found at i:25753833 original size:154 final size:154
Alignment explanation
Indices: 25753625--25753935 Score: 622
Period size: 154 Copynumber: 2.0 Consensus size: 154
25753615 CAAAATTGGT
25753625 ACATAGTTGACTACTTCATGCTTTTTAGTGCTAAGAATTGAAAATCTTGACGAGACTTAAAATAC
1 ACATAGTTGACTACTTCATGCTTTTTAGTGCTAAGAATTGAAAATCTTGACGAGACTTAAAATAC
25753690 GATCTTTTGTTAAAATATTGAAAATTTTTCGAGAAAGGGGCACATTTCACGTTAATCGAGAAAGA
66 GATCTTTTGTTAAAATATTGAAAATTTTTCGAGAAAGGGGCACATTTCACGTTAATCGAGAAAGA
25753755 GAATTACGTCCCGTAAGTTAGGAC
131 GAATTACGTCCCGTAAGTTAGGAC
25753779 ACATAGTTGACTACTTCATGCTTTTTAGTGCTAAGAATTGAAAATCTTGACGAGACTTAAAATAC
1 ACATAGTTGACTACTTCATGCTTTTTAGTGCTAAGAATTGAAAATCTTGACGAGACTTAAAATAC
25753844 GATCTTTTGTTAAAATATTGAAAATTTTTCGAGAAAGGGGCACATTTCACGTTAATCGAGAAAGA
66 GATCTTTTGTTAAAATATTGAAAATTTTTCGAGAAAGGGGCACATTTCACGTTAATCGAGAAAGA
25753909 GAATTACGTCCCGTAAGTTAGGAC
131 GAATTACGTCCCGTAAGTTAGGAC
25753933 ACA
1 ACA
25753936 ATGTTTTAAA
Statistics
Matches: 157, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
154 157 1.00
ACGTcount: A:0.35, C:0.14, G:0.19, T:0.32
Consensus pattern (154 bp):
ACATAGTTGACTACTTCATGCTTTTTAGTGCTAAGAATTGAAAATCTTGACGAGACTTAAAATAC
GATCTTTTGTTAAAATATTGAAAATTTTTCGAGAAAGGGGCACATTTCACGTTAATCGAGAAAGA
GAATTACGTCCCGTAAGTTAGGAC
Found at i:25754636 original size:14 final size:15
Alignment explanation
Indices: 25754594--25754655 Score: 53
Period size: 14 Copynumber: 4.5 Consensus size: 15
25754584 AAGTATATTT
25754594 TAAA-AAAATGATAA
1 TAAATAAAATGATAA
**
25754608 TAAATAAAACAATAA
1 TAAATAAAATGATAA
*
25754623 -CAATAAAATGATAA
1 TAAATAAAATGATAA
*
25754637 -AATTAAAA-GA-AA
1 TAAATAAAATGATAA
25754649 TAAATAA
1 TAAATAA
25754656 GTGTAATAAA
Statistics
Matches: 38, Mismatches: 8, Indels: 5
0.75 0.16 0.10
Matches are distributed among these distances:
12 2 0.05
13 7 0.18
14 21 0.55
15 8 0.21
ACGTcount: A:0.71, C:0.03, G:0.05, T:0.21
Consensus pattern (15 bp):
TAAATAAAATGATAA
Found at i:25754955 original size:29 final size:28
Alignment explanation
Indices: 25754910--25754964 Score: 76
Period size: 29 Copynumber: 1.9 Consensus size: 28
25754900 TCAAATTGGA
*
25754910 CAAAATTAAAATCGAAATGAATTTTAAGG
1 CAAAATTAAAATCGAAA-GAAATTTAAGG
25754939 CAAAATTAAAAAT-GAAAGAAATTTAA
1 CAAAATT-AAAATCGAAAGAAATTTAA
25754965 TTGTAAAATA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
28 8 0.33
29 11 0.46
30 5 0.21
ACGTcount: A:0.58, C:0.05, G:0.11, T:0.25
Consensus pattern (28 bp):
CAAAATTAAAATCGAAAGAAATTTAAGG
Found at i:25757732 original size:5 final size:5
Alignment explanation
Indices: 25757724--25757870 Score: 294
Period size: 5 Copynumber: 29.4 Consensus size: 5
25757714 TTATTTACTT
25757724 TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA
1 TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA
25757774 TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA
1 TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA
25757824 TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TA
1 TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TA
25757871 ATATTAATAT
Statistics
Matches: 142, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 142 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (5 bp):
TATAA
Found at i:25758384 original size:12 final size:12
Alignment explanation
Indices: 25758360--25758403 Score: 54
Period size: 12 Copynumber: 3.5 Consensus size: 12
25758350 ATTTATATAA
25758360 ATTAAATTAAAT
1 ATTAAATTAAAT
25758372 ATTAATATT-AAT
1 ATTAA-ATTAAAT
25758384 ATTATAATGTAAAT
1 ATTA-AAT-TAAAT
25758398 ATTAAA
1 ATTAAA
25758404 ATATATGTTA
Statistics
Matches: 28, Mismatches: 0, Indels: 7
0.80 0.00 0.20
Matches are distributed among these distances:
12 14 0.50
13 7 0.25
14 7 0.25
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (12 bp):
ATTAAATTAAAT
Found at i:25759744 original size:2 final size:2
Alignment explanation
Indices: 25759737--25759769 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
25759727 ACTTTTTATT
25759737 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
25759770 CTTATAGACA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:25761262 original size:9 final size:10
Alignment explanation
Indices: 25761242--25761270 Score: 51
Period size: 9 Copynumber: 3.0 Consensus size: 10
25761232 ATTACATGTT
25761242 TGAATAGAAA
1 TGAATAGAAA
25761252 TGAAT-GAAA
1 TGAATAGAAA
25761261 TGAATAGAAA
1 TGAATAGAAA
25761271 AAGAGAAATG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
9 9 0.50
10 9 0.50
ACGTcount: A:0.59, C:0.00, G:0.21, T:0.21
Consensus pattern (10 bp):
TGAATAGAAA
Found at i:25773976 original size:28 final size:28
Alignment explanation
Indices: 25773936--25773990 Score: 92
Period size: 28 Copynumber: 2.0 Consensus size: 28
25773926 GTTTTACAAG
*
25773936 AAGTTGGGATTAAGCACAGGGTGTCTTC
1 AAGTTGGGATTAAACACAGGGTGTCTTC
*
25773964 AAGTTGGGATTAAACATAGGGTGTCTT
1 AAGTTGGGATTAAACACAGGGTGTCTT
25773991 GTCCTCACAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.27, C:0.11, G:0.31, T:0.31
Consensus pattern (28 bp):
AAGTTGGGATTAAACACAGGGTGTCTTC
Found at i:25780543 original size:21 final size:21
Alignment explanation
Indices: 25780517--25780557 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
25780507 ATCTGCTCAA
*
25780517 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGTTGTGGAGTAC
25780538 ACTCCACCTGTTGTGGAGTA
1 ACTCCACCTGTTGTGGAGTA
25780558 TCGCTCGTCT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.20, C:0.27, G:0.22, T:0.32
Consensus pattern (21 bp):
ACTCCACCTGTTGTGGAGTAC
Found at i:25783972 original size:20 final size:20
Alignment explanation
Indices: 25783947--25783984 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
25783937 GTTTATTCGC
*
25783947 GATTTTCAATATTTTGTAAA
1 GATTTTCAAAATTTTGTAAA
*
25783967 GATTTTTAAAATTTTGTA
1 GATTTTCAAAATTTTGTA
25783985 TTTGGATGTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.03, G:0.11, T:0.53
Consensus pattern (20 bp):
GATTTTCAAAATTTTGTAAA
Found at i:25794670 original size:30 final size:30
Alignment explanation
Indices: 25794634--25794694 Score: 113
Period size: 30 Copynumber: 2.0 Consensus size: 30
25794624 TAATTGGAGA
*
25794634 AAAAGTAAAGTTTATTTTTGATAAGTTTTT
1 AAAAGTAAAGTTTATTTTTGAGAAGTTTTT
25794664 AAAAGTAAAGTTTATTTTTGAGAAGTTTTT
1 AAAAGTAAAGTTTATTTTTGAGAAGTTTTT
25794694 A
1 A
25794695 TGGCGAGCTA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.38, C:0.00, G:0.15, T:0.48
Consensus pattern (30 bp):
AAAAGTAAAGTTTATTTTTGAGAAGTTTTT
Found at i:25797643 original size:40 final size:40
Alignment explanation
Indices: 25797599--25797741 Score: 191
Period size: 40 Copynumber: 3.5 Consensus size: 40
25797589 TTGACGACAA
25797599 TTCGGCTATGTATGGCACTTAGTGTGCGATTCAAGATAGC
1 TTCGGCTATGTATGGCACTTAGTGTGCGATTCAAGATAGC
*
25797639 TTCGGCTATGTATGGCACTTAGTGTGCGATTCAAG-TAAGT
1 TTCGGCTATGTATGGCACTTAGTGTGCGATTCAAGAT-AGC
* * *
25797679 TTCGGCTATATATGACACTTAGTGTGCGGGATT-AAAATAGC
1 TTCGGCTATGTATGGCACTTAGTGTGC--GATTCAAGATAGC
*
25797720 TTTGGCTATGTATTGGCACTTA
1 TTCGGCTATGTA-TGGCACTTA
25797742 ATGTACGAGA
Statistics
Matches: 90, Mismatches: 8, Indels: 8
0.85 0.08 0.08
Matches are distributed among these distances:
39 1 0.01
40 62 0.69
41 14 0.16
42 13 0.14
ACGTcount: A:0.24, C:0.15, G:0.26, T:0.35
Consensus pattern (40 bp):
TTCGGCTATGTATGGCACTTAGTGTGCGATTCAAGATAGC
Found at i:25800998 original size:48 final size:47
Alignment explanation
Indices: 25800943--25801117 Score: 190
Period size: 48 Copynumber: 3.7 Consensus size: 47
25800933 GGTAAATTGT
* * * *
25800943 CGATGCCATG-TCCTAAACATGGTCTTACACTGGTTCACATGTCGAGGC
1 CGATGCCATGTTCC-AAACATGGTCTTACACTGGCTCTCATATC-ATGC
* * * * * * *
25800991 CGATGCCATGTCCCAGATATGGTCTTACTCTAGCTCTCGTCTCAATGC
1 CGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATATC-ATGC
* *
25801039 CGATGCCATGTTCCAAACATGGTCTTAAACTGGCTCTCATAACATTGC
1 CGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATATCA-TGC
25801087 CGATGCCATGTTCCAAACATGGTCTTACACT
1 CGATGCCATGTTCCAAACATGGTCTTACACT
25801118 AGCACACATA
Statistics
Matches: 104, Mismatches: 21, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
47 1 0.01
48 101 0.97
49 2 0.02
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.29
Consensus pattern (47 bp):
CGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATATCATGC
Found at i:25801109 original size:96 final size:96
Alignment explanation
Indices: 25800943--25801120 Score: 234
Period size: 96 Copynumber: 1.9 Consensus size: 96
25800933 GGTAAATTGT
* * ** *
25800943 CGATGCCATGTCCTAAACATGGTCTTACACTGGTTCACATGTCGAGGCCGATGCCATGTCCCAGA
1 CGATGCCATGTCCTAAACATGGTCTTAAACTGGCTCACATAACGAGGCCGATGCCATGTCCCAAA
* *
25801008 TATGGTCTTACTCTAGCTCTCGTCTCAATGC
66 CATGGTCTTACACTAGCTCTCGTCTCAATGC
* * *
25801039 CGATGCCATGTTCC-AAACATGGTCTTAAACTGGCTCTCATAAC-ATTGCCGATGCCATGTTCCA
1 CGATGCCATG-TCCTAAACATGGTCTTAAACTGGCTCACATAACGA-GGCCGATGCCATGTCCCA
25801102 AACATGGTCTTACACTAGC
64 AACATGGTCTTACACTAGC
25801121 ACACATATCA
Statistics
Matches: 70, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
95 1 0.01
96 66 0.94
97 3 0.04
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.29
Consensus pattern (96 bp):
CGATGCCATGTCCTAAACATGGTCTTAAACTGGCTCACATAACGAGGCCGATGCCATGTCCCAAA
CATGGTCTTACACTAGCTCTCGTCTCAATGC
Found at i:25806921 original size:51 final size:51
Alignment explanation
Indices: 25806804--25806985 Score: 257
Period size: 51 Copynumber: 3.6 Consensus size: 51
25806794 CTGGTACGCA
* *
25806804 TAGTAGCCTGCACTTAGTACTACACA--TGCAAC-CAATAATTT--GGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTG-ATCACAGT--TTTCGGGTACACG
25806853 TAGTAGCCTGCACTTAGTACTACACACGTGATCACAGTTTTCGGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGATCACAGTTTTCGGGTACACG
* * *
25806904 TAGTACCCTGCACTTAGTACTACACACGTGATCACAGTTTTCGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGATCACAGTTTTCGGGTACACG
25806955 TAGTAGCCTGCACTTAGTACTACACACGTGA
1 TAGTAGCCTGCACTTAGTACTACACACGTGA
25806986 CCTCACAATA
Statistics
Matches: 122, Mismatches: 6, Indels: 8
0.90 0.04 0.06
Matches are distributed among these distances:
49 29 0.24
50 2 0.02
51 91 0.75
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.27
Consensus pattern (51 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGATCACAGTTTTCGGGTACACG
Done.