Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr02 99090824
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 99090824
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 317 characters in sequence are not A, C, G, or T
File 86 of 318
Found at i:25808665 original size:29 final size:29
Alignment explanation
Indices: 25808575--25808763 Score: 238
Period size: 29 Copynumber: 6.5 Consensus size: 29
25808565 ACTCGATTTC
* * **
25808575 GCACACTTAGTGCCATGTGATTT-AAGCCC
1 GCACACTTAGTGCCATAT-ATTTCCAGCAT
* *** *
25808604 GCACACATAGTGCCATACCCTTCGAGC-T
1 GCACACTTAGTGCCATATATTTCCAGCAT
** *
25808632 CGCACACCCAGTGCCGTATATTTCCAGCAT
1 -GCACACTTAGTGCCATATATTTCCAGCAT
25808662 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
25808691 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
25808720 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
25808749 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
25808764 ATCTCGTCAC
Statistics
Matches: 140, Mismatches: 17, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
28 2 0.01
29 137 0.98
30 1 0.01
ACGTcount: A:0.26, C:0.31, G:0.16, T:0.27
Consensus pattern (29 bp):
GCACACTTAGTGCCATATATTTCCAGCAT
Found at i:25814996 original size:48 final size:48
Alignment explanation
Indices: 25814944--25815072 Score: 159
Period size: 48 Copynumber: 2.7 Consensus size: 48
25814934 TGTCGAGGCA
* * * * ***
25814944 GATGCCATATCCCAGACATGGTCTTACACTAGCCCTCGTCTTAATACC
1 GATGCCATGTTCCAAACATGGTCTTACACTAGCCCTCATAACAATACC
* * * *
25814992 GATGCCATGTTCCAAACATGGTCTTAAACTAGCTCTCATAACATTGCC
1 GATGCCATGTTCCAAACATGGTCTTACACTAGCCCTCATAACAATACC
25815040 GATGCCATGTTCCAAACATGGTCTTACACTAGC
1 GATGCCATGTTCCAAACATGGTCTTACACTAGC
25815073 ACACATATCA
Statistics
Matches: 69, Mismatches: 12, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
48 69 1.00
ACGTcount: A:0.27, C:0.29, G:0.16, T:0.28
Consensus pattern (48 bp):
GATGCCATGTTCCAAACATGGTCTTACACTAGCCCTCATAACAATACC
Found at i:25815858 original size:24 final size:24
Alignment explanation
Indices: 25815825--25815922 Score: 151
Period size: 24 Copynumber: 4.0 Consensus size: 24
25815815 AAGGTTGTCA
25815825 GGAGAAGATTTAGGAGCTGATAAG
1 GGAGAAGATTTAGGAGCTGATAAG
* *
25815849 GGAGAGGATTTAGGAGCTGATAAC
1 GGAGAAGATTTAGGAGCTGATAAG
* *
25815873 GGAGAGGATTTAGGAGCTGATAAA
1 GGAGAAGATTTAGGAGCTGATAAG
25815897 GGAGAAGATTTAGGAGCTGATCAAG
1 GGAGAAGATTTAGGAGCTGAT-AAG
25815922 G
1 G
25815923 AGCAGGAGTT
Statistics
Matches: 68, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
24 65 0.96
25 3 0.04
ACGTcount: A:0.36, C:0.06, G:0.38, T:0.20
Consensus pattern (24 bp):
GGAGAAGATTTAGGAGCTGATAAG
Found at i:25823767 original size:24 final size:24
Alignment explanation
Indices: 25823739--25823862 Score: 196
Period size: 24 Copynumber: 5.2 Consensus size: 24
25823729 AAAGGCTGTC
*
25823739 AGGAGAAGAGTTAGGAGCTGATAA
1 AGGAGAAGATTTAGGAGCTGATAA
* *
25823763 GGGAGAGGATTTAGGAGCTGAT-A
1 AGGAGAAGATTTAGGAGCTGATAA
*
25823786 AGGAGAGGATTTAGGAGCTGATAA
1 AGGAGAAGATTTAGGAGCTGATAA
25823810 AGGAGAAGATTTAGGAGCTGATAA
1 AGGAGAAGATTTAGGAGCTGATAA
*
25823834 AGGAGAAGATTTAGGAGCTGATCA
1 AGGAGAAGATTTAGGAGCTGATAA
25823858 AGGAG
1 AGGAG
25823863 CAGGAGTTGG
Statistics
Matches: 93, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
23 22 0.24
24 71 0.76
ACGTcount: A:0.38, C:0.05, G:0.38, T:0.19
Consensus pattern (24 bp):
AGGAGAAGATTTAGGAGCTGATAA
Found at i:25823861 original size:12 final size:12
Alignment explanation
Indices: 25823751--25823863 Score: 68
Period size: 12 Copynumber: 9.5 Consensus size: 12
25823741 GAGAAGAGTT
25823751 AGGAGCTGA-TA
1 AGGAGCTGATTA
** *
25823762 AGGGAGAGGATTT
1 A-GGAGCTGATTA
25823775 AGGAGCTGA-TA
1 AGGAGCTGATTA
** *
25823786 AGGAGAGGATTT
1 AGGAGCTGATTA
*
25823798 AGGAGCTGATAA
1 AGGAGCTGATTA
** *
25823810 AGGAGAAGATTT
1 AGGAGCTGATTA
*
25823822 AGGAGCTGATAA
1 AGGAGCTGATTA
** *
25823834 AGGAGAAGATTT
1 AGGAGCTGATTA
*
25823846 AGGAGCTGATCA
1 AGGAGCTGATTA
25823858 AGGAGC
1 AGGAGC
25823864 AGGAGTTGGC
Statistics
Matches: 70, Mismatches: 29, Indels: 5
0.67 0.28 0.05
Matches are distributed among these distances:
11 9 0.13
12 59 0.84
13 2 0.03
ACGTcount: A:0.37, C:0.06, G:0.37, T:0.19
Consensus pattern (12 bp):
AGGAGCTGATTA
Found at i:25825150 original size:26 final size:26
Alignment explanation
Indices: 25825120--25825169 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
25825110 ATAGTTTTAC
25825120 CCCTAGGAGATAAATT-ACCGAAATAT
1 CCCTAGG-GATAAATTGACCGAAATAT
* *
25825146 CCCTAGGGTTAAATTGACCTAAAT
1 CCCTAGGGATAAATTGACCGAAAT
25825170 GCATGTTTGA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 7 0.33
26 14 0.67
ACGTcount: A:0.38, C:0.20, G:0.16, T:0.26
Consensus pattern (26 bp):
CCCTAGGGATAAATTGACCGAAATAT
Found at i:25825556 original size:33 final size:34
Alignment explanation
Indices: 25825479--25825559 Score: 85
Period size: 32 Copynumber: 2.4 Consensus size: 34
25825469 TATGGGCCAT
*
25825479 ACTGTTATCTGAATAAGGGGCTAAGGCCCAGTTT
1 ACTGTTATCTGAATAAGGGGCTAAGGCCCAGTTC
* ** **
25825513 AATGAAATCTGAA-AA-GGGCTCTGGCCCAGTGTC
1 ACTGTTATCTGAATAAGGGGCTAAGGCCCAGT-TC
25825546 ACTGTTATCTGAAT
1 ACTGTTATCTGAAT
25825560 GGGCTTAGGC
Statistics
Matches: 36, Mismatches: 9, Indels: 4
0.73 0.18 0.08
Matches are distributed among these distances:
32 13 0.36
33 13 0.36
34 10 0.28
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (34 bp):
ACTGTTATCTGAATAAGGGGCTAAGGCCCAGTTC
Found at i:25832219 original size:14 final size:14
Alignment explanation
Indices: 25832200--25832229 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
25832190 TGATTATTTT
25832200 TAATCTAATTTAAC
1 TAATCTAATTTAAC
25832214 TAATCTAATTTAAC
1 TAATCTAATTTAAC
25832228 TA
1 TA
25832230 CGAAGGCAAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.43, C:0.13, G:0.00, T:0.43
Consensus pattern (14 bp):
TAATCTAATTTAAC
Found at i:25834838 original size:24 final size:24
Alignment explanation
Indices: 25834789--25834840 Score: 70
Period size: 25 Copynumber: 2.2 Consensus size: 24
25834779 GTGTTCAAGC
*
25834789 GAGCCATGTCAGGAAGCTCATAAA
1 GAGCCATATCAGGAAGCTCATAAA
*
25834813 GAGCCTATATCAGGATGCTCAT-AA
1 GAGCC-ATATCAGGAAGCTCATAAA
25834837 GAGC
1 GAGC
25834841 AACATTTGTG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 11 0.44
25 14 0.56
ACGTcount: A:0.35, C:0.21, G:0.25, T:0.19
Consensus pattern (24 bp):
GAGCCATATCAGGAAGCTCATAAA
Found at i:25835341 original size:21 final size:21
Alignment explanation
Indices: 25835317--25835356 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
25835307 TGAATTTAAC
* *
25835317 ATCAATTTAATTCATTTCATA
1 ATCAATTTAACTCAATTCATA
25835338 ATCAATTTAACTCAATTCA
1 ATCAATTTAACTCAATTCA
25835357 CATCCTAGGC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.40, C:0.17, G:0.00, T:0.42
Consensus pattern (21 bp):
ATCAATTTAACTCAATTCATA
Found at i:25838699 original size:49 final size:49
Alignment explanation
Indices: 25838561--25838717 Score: 137
Period size: 49 Copynumber: 3.2 Consensus size: 49
25838551 TGAGGTGTGT
* * **
25838561 TAGTGTAAGACCTGTCTAGGACATGGCATCGACACAGATAAATGAGAGC
1 TAGTGTAAGACCTGTCTAGGGCATGGCATCGACATAGATGTATGAGAGC
* * * *
25838610 TAGTGTAAGACCTGT-TTGGGACATGGCATC-AGCCTCGATGTTTGCA-AG-
1 TAGTGTAAGACCTGTCTAGGG-CATGGCATCGA-CATAGATGTATG-AGAGC
* *
25838658 TCAGTGTAAGACCTATCTAGGGCATGGCATCGACTTAGATG--TGAGAGC
1 T-AGTGTAAGACCTGTCTAGGGCATGGCATCGACATAGATGTATGAGAGC
*
25838706 CAGTGTAAGACC
1 TAGTGTAAGACC
25838718 ATGTTTGGAA
Statistics
Matches: 87, Mismatches: 13, Indels: 18
0.74 0.11 0.15
Matches are distributed among these distances:
46 1 0.01
47 15 0.17
48 5 0.06
49 60 0.69
50 6 0.07
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.24
Consensus pattern (49 bp):
TAGTGTAAGACCTGTCTAGGGCATGGCATCGACATAGATGTATGAGAGC
Found at i:25846396 original size:93 final size:93
Alignment explanation
Indices: 25846299--25846523 Score: 240
Period size: 98 Copynumber: 2.4 Consensus size: 93
25846289 AAGATATGCA
* * *
25846299 AGCTAGTGTAAGACCTGTCTGGGACATGGCATTGGCTTGA-G-GTG-TGTCAGTGTAAGACTTAT
1 AGCTAGTGTAAGACCTGTCTGGGACATGGCATTGGCTCGATGTATGAAGTCAGTGTAAGACTTAT
*
25846361 TTGGGACATGGCATCGACACAGATTAGTGAG
66 CTGGGACATGGCATCGACACAGA-T-GTG-G
* * * * *
25846392 AGCTAGTGGAAGACCTGTCTAGGACATGGCATCAGCCTCGATGTATGAAAGTCTGTGTAAGACTT
1 AGCTAGTGTAAGACCTGTCTGGGACATGGCAT-TGGCTCGATGTATG-AAGTCAGTGTAAGACTT
* **
25846457 GTCTGGGACATGGCATCGACTTAGATGTGG
64 ATCTGGGACATGGCATCGACACAGATGTGG
* * *
25846487 AGCCAGTGTAAGACCATGTTTGGAACATGGCATTGGC
1 AGCTAGTGTAAGACC-TGTCTGGGACATGGCATTGGC
25846524 ATCGTACCTT
Statistics
Matches: 107, Mismatches: 19, Indels: 10
0.79 0.14 0.07
Matches are distributed among these distances:
93 30 0.28
94 5 0.05
95 17 0.16
96 19 0.18
97 1 0.01
98 35 0.33
ACGTcount: A:0.25, C:0.17, G:0.31, T:0.27
Consensus pattern (93 bp):
AGCTAGTGTAAGACCTGTCTGGGACATGGCATTGGCTCGATGTATGAAGTCAGTGTAAGACTTAT
CTGGGACATGGCATCGACACAGATGTGG
Found at i:25846424 original size:49 final size:48
Alignment explanation
Indices: 25846202--25846519 Score: 199
Period size: 49 Copynumber: 6.6 Consensus size: 48
25846192 TGATATGTGT
* * *
25846202 GCTAGTGTAAGACCTGTTTGGGTCATGGCATCGACACCGATAGATGAGA
1 GCTAGTGTAAGACCTGTCTGGGACATGGCATCGACACAGATAG-TGAGA
* * * * * *
25846251 GCCAGTGGAAGACCTGTCTAGGACACGGCATTGACCTCAAGATA-TGCA-A
1 GCTAGTGTAAGACCTGTCTGGGACATGGCATCGA-CAC-AGATAGTG-AGA
* * ** * *
25846300 GCTAGTGTAAGACCTGTCTGGGACATGGCATTGGC-TTGA-GGTGTG-
1 GCTAGTGTAAGACCTGTCTGGGACATGGCATCGACACAGATAGTGAGA
* * * *
25846345 TC-AGTGTAAGACTTATTTGGGACATGGCATCGACACAGATTAGTGAGA
1 GCTAGTGTAAGACCTGTCTGGGACATGGCATCGACACAGA-TAGTGAGA
* * * * *
25846393 GCTAGTGGAAGACCTGTCTAGGACATGGCATCAGCCTC-GAT-GTATGAAA
1 GCTAGTGTAAGACCTGTCTGGGACATGGCATC-GACACAGATAG--TGAGA
* **
25846442 GTCT-GTGTAAGACTTGTCTGGGACATGGCATCGACTTAGAT-GTG-GA
1 G-CTAGTGTAAGACCTGTCTGGGACATGGCATCGACACAGATAGTGAGA
* * *
25846488 GCCAGTGTAAGACCATGTTTGGAACATGGCAT
1 GCTAGTGTAAGACC-TGTCTGGGACATGGCAT
25846520 TGGCATCGTA
Statistics
Matches: 205, Mismatches: 47, Indels: 36
0.71 0.16 0.12
Matches are distributed among these distances:
44 27 0.13
45 4 0.02
46 15 0.07
47 22 0.11
48 6 0.03
49 119 0.58
50 8 0.04
51 4 0.02
ACGTcount: A:0.26, C:0.18, G:0.30, T:0.25
Consensus pattern (48 bp):
GCTAGTGTAAGACCTGTCTGGGACATGGCATCGACACAGATAGTGAGA
Found at i:25846454 original size:142 final size:142
Alignment explanation
Indices: 25846205--25846519 Score: 386
Period size: 142 Copynumber: 2.2 Consensus size: 142
25846195 TATGTGTGCT
* * *
25846205 AGTGTAAGACCTGTTTGGGTCATGGCATCGACACCGATAGATGAGAGCCAGTGGAAGACCTGTCT
1 AGTGTAAGACCTATTTGGGACATGGCATCGACACAGATAGATGAGAGCCAGTGGAAGACCTGTCT
* *
25846270 AGGACACGGCATTGACCTCAAGATATGCAAGCTAGTGTAAGACCTGTCTGGGACATGGCATTGGC
66 AGGACACGGCATAGACCTCAAGATATGAAAGCTAGTGTAAGACCTGTCTGGGACATGGCATTGGC
25846335 TTGAGGTGTGTC
131 TTGAGGTGTGTC
* *
25846347 AGTGTAAGACTTATTTGGGACATGGCATCGACACAGATTAG-TGAGAGCTAGTGGAAGACCTGTC
1 AGTGTAAGACCTATTTGGGACATGGCATCGACACAGA-TAGATGAGAGCCAGTGGAAGACCTGTC
* * *
25846411 TAGGACATGGCATCAG-CCTCGATG-TATGAAAGTCT-GTGTAAGACTTGTCTGGGACATGGCAT
65 TAGGACACGGCAT-AGACCTC-AAGATATGAAAG-CTAGTGTAAGACCTGTCTGGGACATGGCAT
* * * * *
25846473 CGACTTAGATGTGGAGCC
127 TGGCTT-GAGGT-GTGTC
* *
25846491 AGTGTAAGACCATGTTTGGAACATGGCAT
1 AGTGTAAGACC-TATTTGGGACATGGCAT
25846520 TGGCATCGTA
Statistics
Matches: 148, Mismatches: 18, Indels: 11
0.84 0.10 0.06
Matches are distributed among these distances:
142 108 0.73
143 12 0.08
144 13 0.09
145 15 0.10
ACGTcount: A:0.27, C:0.18, G:0.30, T:0.25
Consensus pattern (142 bp):
AGTGTAAGACCTATTTGGGACATGGCATCGACACAGATAGATGAGAGCCAGTGGAAGACCTGTCT
AGGACACGGCATAGACCTCAAGATATGAAAGCTAGTGTAAGACCTGTCTGGGACATGGCATTGGC
TTGAGGTGTGTC
Found at i:25850726 original size:46 final size:44
Alignment explanation
Indices: 25850622--25850729 Score: 144
Period size: 44 Copynumber: 2.4 Consensus size: 44
25850612 TGTCTTTGAC
** * * *
25850622 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
*
25850666 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATTTCTAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATA--TATAAT
25850712 ATGGACTTACATGGCTCA
1 ATGGACTTACATGGCTCA
25850730 TTTCGTTCTG
Statistics
Matches: 56, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
44 33 0.59
46 23 0.41
ACGTcount: A:0.30, C:0.23, G:0.14, T:0.33
Consensus pattern (44 bp):
ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
Found at i:25851876 original size:2 final size:2
Alignment explanation
Indices: 25851869--25851897 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
25851859 AATAATAAAT
25851869 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
25851898 TTTTAACCTG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:25854504 original size:40 final size:39
Alignment explanation
Indices: 25854460--25854637 Score: 180
Period size: 40 Copynumber: 4.4 Consensus size: 39
25854450 ACTCGATTGT
* *
25854460 CTTCGGGACATAGCCCGATTATAGTAATTCGCACAATTGC
1 CTTCGGGACATAGCCCGATT-TAGTAACTCGCACAAATGC
25854500 CTTCGGGA-ATTAGCCCGGATTTAGTAACTCGCACAAATGC
1 CTTCGGGACA-TAGCCC-GATTTAGTAACTCGCACAAATGC
* * *
25854540 CTTCGGGACTTAACCCGATTTTGGTAACTCGCACAAATGC
1 CTTCGGGACATAGCCCGA-TTTAGTAACTCGCACAAATGC
* * * * *
25854580 CTTCGGGA-ATTGACCTGGATTTAGTCACTTAGCACAAAAGC
1 CTTCGGGACATAG-CC-CGATTTAGTAAC-TCGCACAAATGC
*
25854621 CTTCGGGACTTAGCCCG
1 CTTCGGGACATAGCCCG
25854638 GATACCATTC
Statistics
Matches: 114, Mismatches: 16, Indels: 16
0.78 0.11 0.11
Matches are distributed among these distances:
39 4 0.04
40 82 0.72
41 26 0.23
42 2 0.02
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (39 bp):
CTTCGGGACATAGCCCGATTTAGTAACTCGCACAAATGC
Found at i:25854558 original size:80 final size:81
Alignment explanation
Indices: 25854460--25854637 Score: 243
Period size: 80 Copynumber: 2.2 Consensus size: 81
25854450 ACTCGATTGT
* * *
25854460 CTTCGGGACATAGCCCGATTATAGTAATTCGCACAATTGCCTTCGGGAATT-AGCCCGGATTTAG
1 CTTCGGGACTTAGCCCGATTATAGTAACTCGCACAAATGCCTTCGGGAATTGA-CCCGGATTTAG
* *
25854524 TAAC-TCGCACAAATGC
65 TAACTTAGCACAAAAGC
* * * *
25854540 CTTCGGGACTTAACCCGATTTTGGTAACTCGCACAAATGCCTTCGGGAATTGACCTGGATTTAGT
1 CTTCGGGACTTAGCCCGATTATAGTAACTCGCACAAATGCCTTCGGGAATTGACCCGGATTTAGT
*
25854605 CACTTAGCACAAAAGC
66 AACTTAGCACAAAAGC
25854621 CTTCGGGACTTAGCCCG
1 CTTCGGGACTTAGCCCG
25854638 GATACCATTC
Statistics
Matches: 85, Mismatches: 11, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
80 58 0.68
81 27 0.32
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (81 bp):
CTTCGGGACTTAGCCCGATTATAGTAACTCGCACAAATGCCTTCGGGAATTGACCCGGATTTAGT
AACTTAGCACAAAAGC
Found at i:25862542 original size:40 final size:40
Alignment explanation
Indices: 25862488--25862668 Score: 197
Period size: 40 Copynumber: 4.5 Consensus size: 40
25862478 GATCGATTGT
* *
25862488 CTTCGGGACA-TAGCCCGG-TTATAGTAATTCGCACAATTGC
1 CTTCGGGA-ATTAGCCCGGATT-TAGTAACTCGCACAAATGC
*
25862528 CTTTGGGAATTAGCCCGGATTTAGTAACTCGCACAAATGC
1 CTTCGGGAATTAGCCCGGATTTAGTAACTCGCACAAATGC
* * * * *
25862568 CTTCGGGACTTAACCCAGTTTTGGTAACTCGCACAAATGC
1 CTTCGGGAATTAGCCCGGATTTAGTAACTCGCACAAATGC
* * *
25862608 CTTCGGGAATT-GACCCGGATTTAGTCACTTAGCACAAAAGC
1 CTTCGGGAATTAG-CCCGGATTTAGTAAC-TCGCACAAATGC
*
25862649 CTTCGGGACTTAGCCCGGAT
1 CTTCGGGAATTAGCCCGGAT
25862669 ACCATTCGAA
Statistics
Matches: 118, Mismatches: 18, Indels: 9
0.81 0.12 0.06
Matches are distributed among these distances:
39 1 0.01
40 87 0.74
41 29 0.25
42 1 0.01
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.27
Consensus pattern (40 bp):
CTTCGGGAATTAGCCCGGATTTAGTAACTCGCACAAATGC
Found at i:25862600 original size:80 final size:81
Alignment explanation
Indices: 25862488--25862660 Score: 224
Period size: 80 Copynumber: 2.1 Consensus size: 81
25862478 GATCGATTGT
* * * * * *
25862488 CTTCGGGACATAGCCCGGTTATAGTAATTCGCACAATTGCCTTTGGGAATT-AGCCCGGATTTAG
1 CTTCGGGACTTAACCCAGTTATAGTAACTCGCACAAATGCCTTCGGGAATTGA-CCCGGATTTAG
* *
25862552 TAAC-TCGCACAAATGC
65 TAACTTAGCACAAAAGC
* *
25862568 CTTCGGGACTTAACCCAGTTTTGGTAACTCGCACAAATGCCTTCGGGAATTGACCCGGATTTAGT
1 CTTCGGGACTTAACCCAGTTATAGTAACTCGCACAAATGCCTTCGGGAATTGACCCGGATTTAGT
*
25862633 CACTTAGCACAAAAGC
66 AACTTAGCACAAAAGC
25862649 CTTCGGGACTTA
1 CTTCGGGACTTA
25862661 GCCCGGATAC
Statistics
Matches: 80, Mismatches: 11, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
80 57 0.71
81 23 0.29
ACGTcount: A:0.26, C:0.25, G:0.22, T:0.27
Consensus pattern (81 bp):
CTTCGGGACTTAACCCAGTTATAGTAACTCGCACAAATGCCTTCGGGAATTGACCCGGATTTAGT
AACTTAGCACAAAAGC
Found at i:25867924 original size:21 final size:21
Alignment explanation
Indices: 25867886--25867929 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
25867876 GAATCTAAAG
* *
25867886 TCAATTTAATCCATTTCATAT
1 TCAATTTAATCCAATTCACAT
*
25867907 TCAATTTAATTCAATTCACAT
1 TCAATTTAATCCAATTCACAT
25867928 TC
1 TC
25867930 TAGTCAAAAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.34, C:0.20, G:0.00, T:0.45
Consensus pattern (21 bp):
TCAATTTAATCCAATTCACAT
Found at i:25882375 original size:28 final size:28
Alignment explanation
Indices: 25882329--25882397 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
25882319 TTTAAAACCC
*
25882329 TAGGGGT-ATATCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
25882356 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
25882384 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
25882398 TGATCTACGC
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 7 0.17
28 33 0.82
ACGTcount: A:0.19, C:0.10, G:0.28, T:0.43
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTGCTCTT
Found at i:25884049 original size:20 final size:20
Alignment explanation
Indices: 25884026--25884063 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
25884016 CACATCCAAA
*
25884026 TACAAAATTTTAAAAATCTT
1 TACAAAATATTAAAAATCTT
*
25884046 TACAAAATATTGAAAATC
1 TACAAAATATTAAAAATC
25884064 GCGAATAAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.11, G:0.03, T:0.34
Consensus pattern (20 bp):
TACAAAATATTAAAAATCTT
Found at i:25887459 original size:42 final size:43
Alignment explanation
Indices: 25887413--25887584 Score: 127
Period size: 42 Copynumber: 4.0 Consensus size: 43
25887403 ACATAGGATT
25887413 TCGATATGTGATT-CGTGTAAGACCACATCTGGGACATTGGCA
1 TCGATATGTGATTACGTGTAAGACCACATCTGGGACATTGGCA
* * * *** *
25887455 TCGATTTTTGATTTACGTGTAAGACCATATCTGGGACATCAACG
1 TCGATATGTGA-TTACGTGTAAGACCACATCTGGGACATTGGCA
* * *
25887499 TC-ATATATGAATT-TGTGTAAGACC-CTATCTGGGACAGTGGCA
1 TCGATATGTG-ATTACGTGTAAGACCAC-ATCTGGGACATTGGCA
* ** * * ** *
25887541 TCAATGGGTCATTACATGTAAGACCATGTCTGGGACGTTGGCA
1 TCGATATGTGATTACGTGTAAGACCACATCTGGGACATTGGCA
25887584 T
1 T
25887585 TGTACGAGCT
Statistics
Matches: 97, Mismatches: 26, Indels: 13
0.71 0.19 0.10
Matches are distributed among these distances:
42 35 0.36
43 35 0.36
44 27 0.28
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.31
Consensus pattern (43 bp):
TCGATATGTGATTACGTGTAAGACCACATCTGGGACATTGGCA
Found at i:25890082 original size:42 final size:42
Alignment explanation
Indices: 25890023--25890132 Score: 123
Period size: 44 Copynumber: 2.6 Consensus size: 42
25890013 GATGCCACTA
* * * *
25890023 TCCCAGACAGGGTCTTACACGAAATCAATTA-CAATGTCGATG
1 TCCCAGACATGGTCTTACACGAAAT-AATAAGCAATGTCAACG
* * *
25890065 TCCCAAACATGGTCTTACACGTAAATTATAAGTCGATGTCAACG
1 TCCCAGACATGGTCTTACACG-AAATAATAAG-CAATGTCAACG
25890109 TCCCAGACATGGTCTTACACGAAA
1 TCCCAGACATGGTCTTACACGAAA
25890133 ACACATATCA
Statistics
Matches: 57, Mismatches: 8, Indels: 5
0.81 0.11 0.07
Matches are distributed among these distances:
42 22 0.39
43 7 0.12
44 28 0.49
ACGTcount: A:0.34, C:0.25, G:0.17, T:0.25
Consensus pattern (42 bp):
TCCCAGACATGGTCTTACACGAAATAATAAGCAATGTCAACG
Found at i:25893485 original size:2 final size:2
Alignment explanation
Indices: 25893478--25893504 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
25893468 TTTGGCTAAG
25893478 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
25893505 CCATATAGCC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:25894348 original size:20 final size:20
Alignment explanation
Indices: 25894319--25894376 Score: 91
Period size: 20 Copynumber: 3.0 Consensus size: 20
25894309 CCGAATATAC
25894319 ATAT-ATCCAATATCAAAAT
1 ATATCATCCAATATCAAAAT
25894338 ATATCATCCAATATCAAAAT
1 ATATCATCCAATATCAAAAT
* *
25894358 ATATCATTCAATCTCAAAA
1 ATATCATCCAATATCAAAA
25894377 CCATAATATC
Statistics
Matches: 36, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
19 4 0.11
20 32 0.89
ACGTcount: A:0.50, C:0.19, G:0.00, T:0.31
Consensus pattern (20 bp):
ATATCATCCAATATCAAAAT
Found at i:25894763 original size:43 final size:43
Alignment explanation
Indices: 25894698--25894827 Score: 149
Period size: 43 Copynumber: 3.0 Consensus size: 43
25894688 ATATTGTATA
** *
25894698 ATGCCAATGTCCCAGATGTGGTCTTACATGCT-ATCACATATCG
1 ATGCCAATGTCCCAGAAATGGTCTTACACG-TAATCACATATCG
* *
25894741 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACATATTG
1 ATGCCAATGTCCCAGAAATGGTCTTACACGTAATCACATATCG
* *
25894784 ATGCCAACGTCCCA-AAAGTGGTCTTACACG-AGAACACATATCG
1 ATGCCAATGTCCCAGAAA-TGGTCTTACACGTA-ATCACATATCG
25894827 A
1 A
25894828 AAATCCTATG
Statistics
Matches: 76, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
42 4 0.05
43 72 0.95
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.25
Consensus pattern (43 bp):
ATGCCAATGTCCCAGAAATGGTCTTACACGTAATCACATATCG
Found at i:25900132 original size:93 final size:93
Alignment explanation
Indices: 25900022--25900192 Score: 261
Period size: 93 Copynumber: 1.8 Consensus size: 93
25900012 GCCCCTAAGT
* * * * * *
25900022 GAACTCGGACTCGACTCAATGAGCTCGGGCGTTCGCATCAATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCAATAAGTGAACTAGGAATCAACTCAA
25900087 CGAGTTCGGATGCCTAGTTACATTTTAC
66 CGAGTTCGGATGCCTAGTTACATTTTAC
* * *
25900115 GAACTCGGACTCAACTCAACGAGTTTGGACATTCGCATCCATAAGTGAACTAGGAATCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCAATAAGTGAACTAGGAATCAACTCAA
25900180 CGAGTTCGGATGC
66 CGAGTTCGGATGC
25900193 TCAACCATCC
Statistics
Matches: 69, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
93 69 1.00
ACGTcount: A:0.29, C:0.25, G:0.22, T:0.23
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCAATAAGTGAACTAGGAATCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTTAC
Found at i:25900650 original size:30 final size:30
Alignment explanation
Indices: 25900616--25900675 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
25900606 ATTTAATACG
25900616 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
25900646 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
25900676 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:25908276 original size:40 final size:39
Alignment explanation
Indices: 25908111--25908294 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
25908101 AAATTGAATG
* * *
25908111 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
25908151 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
25908191 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
25908231 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
25908270 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
25908295 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:25908319 original size:80 final size:81
Alignment explanation
Indices: 25908151--25908339 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
25908141 GCTGGAAATT
* * * *
25908151 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
25908216 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
25908232 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
25908295 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
25908311 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
25908340 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:25910923 original size:46 final size:45
Alignment explanation
Indices: 25910856--25911027 Score: 186
Period size: 46 Copynumber: 3.7 Consensus size: 45
25910846 AACCCGCCCC
* *
25910856 TAAGTGAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGTATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGC-TTCGTATCCA
* * * *
25910902 TAAGTGAACTCAGACTCAACTCAACGAGTTCGGATGCCTAGT-TACA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--GCTTCGTATCCA
* * *
25910948 TTTCA-TGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 --TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGC-TTCGTATCCA
*
25910995 TAAGTGAACTCGGACTCAACTCAATGAGTTCGG
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
25911028 ATGCTCAACC
Statistics
Matches: 104, Mismatches: 15, Indels: 14
0.78 0.11 0.11
Matches are distributed among these distances:
45 3 0.03
46 63 0.61
47 34 0.33
48 4 0.04
ACGTcount: A:0.29, C:0.26, G:0.21, T:0.24
Consensus pattern (45 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCTTCGTATCCA
Found at i:25910968 original size:93 final size:93
Alignment explanation
Indices: 25910860--25911031 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
25910850 CGCCCCTAAG
* * * *
25910860 TGAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGTATCCATAAGTGAACTCAGACTCAACTCA
1 TGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCA
25910925 ACGAGTTCGGATGCCTAGTTACATTTCA
66 ACGAGTTCGGATGCCTAGTTACATTTCA
* *
25910953 TGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 TGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCA
*
25911018 ATGAGTTCGGATGC
66 ACGAGTTCGGATGC
25911032 TCAACCATCC
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.24
Consensus pattern (93 bp):
TGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATTTCA
Found at i:25911489 original size:30 final size:30
Alignment explanation
Indices: 25911455--25911514 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
25911445 ATTTAATACG
25911455 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
25911485 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
25911515 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:25913663 original size:14 final size:14
Alignment explanation
Indices: 25913644--25913671 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
25913634 TGCAATCACA
25913644 TGAGAAGTCTATAT
1 TGAGAAGTCTATAT
25913658 TGAGAAGTCTATAT
1 TGAGAAGTCTATAT
25913672 CGACACAACA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.07, G:0.21, T:0.36
Consensus pattern (14 bp):
TGAGAAGTCTATAT
Found at i:25937356 original size:29 final size:29
Alignment explanation
Indices: 25937301--25937439 Score: 82
Period size: 29 Copynumber: 4.8 Consensus size: 29
25937291 TTTAAGCCCG
*** *
25937301 CACACACAGTGCCATACCCTTCGAGCTCC
1 CACACACAGTGCCATATTTTTCCAGCTCC
* * **
25937330 CACACCCAGTGCCGTATTTTTCCAGCTTG
1 CACACACAGTGCCATATTTTTCCAGCTCC
* * *
25937359 CACACATAGTGTCATATTTTTCCAGCAT-G
1 CACACACAGTGCCATATTTTTCCAGC-TCC
** * * * *
25937388 CACACTTAGTGCCTTATATTTCCAGCACG
1 CACACACAGTGCCATATTTTTCCAGCTCC
** *
25937417 CACACTTAGTGCCATATATTTCC
1 CACACACAGTGCCATATTTTTCC
25937440 TGTAACACCC
Statistics
Matches: 90, Mismatches: 18, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
29 89 0.99
30 1 0.01
ACGTcount: A:0.24, C:0.33, G:0.14, T:0.29
Consensus pattern (29 bp):
CACACACAGTGCCATATTTTTCCAGCTCC
Found at i:25937392 original size:58 final size:58
Alignment explanation
Indices: 25937330--25937439 Score: 139
Period size: 58 Copynumber: 1.9 Consensus size: 58
25937320 TTCGAGCTCC
* ** * *
25937330 CACACCCAGTGCCGTATTTTTCCAGCTTGCACACATAGTGTCATATTTTTCCAGCATG
1 CACACCCAGTGCCGTATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCATG
** * *
25937388 CACACTTAGTGCCTTATATTTCCAGCACGCACACTTAGTGCCATATATTTCC
1 CACACCCAGTGCCGTATATTTCCAGCACGCACACATAGTGCCATATATTTCC
25937440 TGTAACACCC
Statistics
Matches: 43, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
58 43 1.00
ACGTcount: A:0.24, C:0.30, G:0.14, T:0.33
Consensus pattern (58 bp):
CACACCCAGTGCCGTATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCATG
Found at i:25947063 original size:80 final size:80
Alignment explanation
Indices: 25946979--25947127 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
25946969 TATGGTAACC
* * * *
25946979 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
25947043 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
25947059 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
25947124 CCGG
66 CCGG
25947128 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:25947069 original size:40 final size:38
Alignment explanation
Indices: 25947020--25947127 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
25947010 ATCACGATTT
*
25947020 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
25947060 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
25947100 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
25947128 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:25959490 original size:7 final size:8
Alignment explanation
Indices: 25959430--25959501 Score: 51
Period size: 8 Copynumber: 8.9 Consensus size: 8
25959420 AAATTATGAT
25959430 TTTTTAAA
1 TTTTTAAA
*
25959438 ATTTTAAA
1 TTTTTAAA
25959446 TAATTTTAAA
1 T--TTTTAAA
25959456 TTTTTTAAGA
1 -TTTTTAA-A
**
25959466 TTTTTTGA
1 TTTTTAAA
*
25959474 GTTTT---
1 TTTTTAAA
25959479 TTTTTAAA
1 TTTTTAAA
25959487 TTTTTAAA
1 TTTTTAAA
25959495 TTTTTAA
1 TTTTTAA
25959502 CCTATTACAC
Statistics
Matches: 51, Mismatches: 6, Indels: 14
0.72 0.08 0.20
Matches are distributed among these distances:
5 4 0.08
8 27 0.53
9 11 0.22
10 8 0.16
11 1 0.02
ACGTcount: A:0.33, C:0.00, G:0.04, T:0.62
Consensus pattern (8 bp):
TTTTTAAA
Found at i:25964148 original size:24 final size:24
Alignment explanation
Indices: 25964121--25964170 Score: 73
Period size: 24 Copynumber: 2.1 Consensus size: 24
25964111 AAGAGCCACA
* *
25964121 ATCAGGAAGTTCACAAAGAACCAT
1 ATCAAGAAGCTCACAAAGAACCAT
*
25964145 ATCAAGAAGCTCACAAAGAGCCAT
1 ATCAAGAAGCTCACAAAGAACCAT
25964169 AT
1 AT
25964171 AATGGGAGCT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.46, C:0.22, G:0.16, T:0.16
Consensus pattern (24 bp):
ATCAAGAAGCTCACAAAGAACCAT
Found at i:25966662 original size:34 final size:34
Alignment explanation
Indices: 25966609--25966675 Score: 116
Period size: 34 Copynumber: 2.0 Consensus size: 34
25966599 AATCTATCCA
25966609 AGGAGAAATCCATACGTACTGGAATAAAGTGTGT
1 AGGAGAAATCCATACGTACTGGAATAAAGTGTGT
* *
25966643 AGGATAAATCCATATGTACTGGAATAAAGTGTG
1 AGGAGAAATCCATACGTACTGGAATAAAGTGTG
25966676 CAGACTTTGT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 31 1.00
ACGTcount: A:0.39, C:0.10, G:0.25, T:0.25
Consensus pattern (34 bp):
AGGAGAAATCCATACGTACTGGAATAAAGTGTGT
Found at i:25979723 original size:51 final size:51
Alignment explanation
Indices: 25979618--25979733 Score: 133
Period size: 51 Copynumber: 2.3 Consensus size: 51
25979608 TACTACCAAA
* * * **
25979618 TATAATATCATATCTTCTAAGATTACATATCTTAGATAAGATATGTAATCT
1 TATAATATCATATCTTATAAGATTACATATCATAGATAAGATATCTAAGAT
* * * ** *
25979669 TATAAAATAATATCTTATAAGATTCCATATCATATCTAAGATCTCTAAGAT
1 TATAATATCATATCTTATAAGATTACATATCATAGATAAGATATCTAAGAT
25979720 TATAATATCATATC
1 TATAATATCATATC
25979734 ATGTTTCCAT
Statistics
Matches: 52, Mismatches: 13, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
51 52 1.00
ACGTcount: A:0.41, C:0.13, G:0.06, T:0.40
Consensus pattern (51 bp):
TATAATATCATATCTTATAAGATTACATATCATAGATAAGATATCTAAGAT
Found at i:25986834 original size:26 final size:26
Alignment explanation
Indices: 25986805--25986854 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
25986795 TACATGTTTA
25986805 ATTTTAAACTAATTTTTA-AATAATAT
1 ATTTTAAA-TAATTTTTATAATAATAT
* *
25986831 ATTTTTAATTATTTTTATAATAAT
1 ATTTTAAATAATTTTTATAATAAT
25986855 TTTTCTTATT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 8 0.38
26 13 0.62
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56
Consensus pattern (26 bp):
ATTTTAAATAATTTTTATAATAATAT
Found at i:25986863 original size:21 final size:22
Alignment explanation
Indices: 25986824--25986875 Score: 63
Period size: 21 Copynumber: 2.4 Consensus size: 22
25986814 TAATTTTTAA
25986824 ATAATATATTTTTAATTATTTTT
1 ATAATA-ATTTTTAATTATTTTT
*
25986847 ATAATAATTTTT-CTTATTTTT
1 ATAATAATTTTTAATTATTTTT
25986868 -TAAATAAT
1 AT-AATAAT
25986876 ATATAAATTT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
20 1 0.04
21 14 0.52
22 6 0.22
23 6 0.22
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.62
Consensus pattern (22 bp):
ATAATAATTTTTAATTATTTTT
Found at i:25988016 original size:12 final size:12
Alignment explanation
Indices: 25987999--25988023 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
25987989 GGCTAGAAAT
25987999 AAAATTAATAAA
1 AAAATTAATAAA
25988011 AAAATTAATAAA
1 AAAATTAATAAA
25988023 A
1 A
25988024 CCCGAACTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (12 bp):
AAAATTAATAAA
Found at i:25993022 original size:26 final size:26
Alignment explanation
Indices: 25992985--25993065 Score: 126
Period size: 26 Copynumber: 3.1 Consensus size: 26
25992975 TGATACAAAT
* * *
25992985 TGATAATAGGTTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
25993011 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
*
25993037 TGATAATGGATTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
25993063 TGA
1 TGA
25993066 GAAGAATTTC
Statistics
Matches: 51, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 51 1.00
ACGTcount: A:0.35, C:0.05, G:0.23, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:25997385 original size:30 final size:31
Alignment explanation
Indices: 25997349--25997421 Score: 103
Period size: 30 Copynumber: 2.4 Consensus size: 31
25997339 TTTTTTGGTC
*
25997349 TAATTTGGTACCCAAATTTGACAC-TTTTCT
1 TAATTTGGTACCCAAACTTGACACTTTTTCT
*
25997379 TAATTTGGTACCTAAACTTGACACTTTTTTCT
1 TAATTTGGTACCCAAACTTGACAC-TTTTTCT
*
25997411 TAAGTTGGTAC
1 TAATTTGGTAC
25997422 TTAAACTTTT
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
30 22 0.58
32 16 0.42
ACGTcount: A:0.26, C:0.18, G:0.12, T:0.44
Consensus pattern (31 bp):
TAATTTGGTACCCAAACTTGACACTTTTTCT
Found at i:25997419 original size:32 final size:30
Alignment explanation
Indices: 25997353--25997429 Score: 100
Period size: 32 Copynumber: 2.5 Consensus size: 30
25997343 TTGGTCTAAT
* * *
25997353 TTGGTACCCAAATTTGACACTTTTCTTAAT
1 TTGGTACCTAAACTTGACACTTTTCTTAAG
25997383 TTGGTACCTAAACTTGACACTTTTTTCTTAAG
1 TTGGTACCTAAACTTGACAC--TTTTCTTAAG
*
25997415 TTGGTACTTAAACTT
1 TTGGTACCTAAACTT
25997430 TTTGGGGATT
Statistics
Matches: 41, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
30 18 0.44
32 23 0.56
ACGTcount: A:0.26, C:0.18, G:0.12, T:0.44
Consensus pattern (30 bp):
TTGGTACCTAAACTTGACACTTTTCTTAAG
Found at i:25997684 original size:24 final size:23
Alignment explanation
Indices: 25997649--25997702 Score: 56
Period size: 24 Copynumber: 2.3 Consensus size: 23
25997639 TTAATTTTAG
* * *
25997649 TTTAATTTAAATATTTAATTAT-T
1 TTTAATTAAAATAATGAATT-TCT
25997672 TTTAATTAAAAATAATGAATTTCT
1 TTTAATT-AAAATAATGAATTTCT
25997696 TTTAATT
1 TTTAATT
25997703 TGGGGTTTTG
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
23 8 0.31
24 18 0.69
ACGTcount: A:0.41, C:0.02, G:0.02, T:0.56
Consensus pattern (23 bp):
TTTAATTAAAATAATGAATTTCT
Found at i:25998022 original size:59 final size:60
Alignment explanation
Indices: 25997899--25998047 Score: 169
Period size: 59 Copynumber: 2.5 Consensus size: 60
25997889 AATTGAACCT
* * **
25997899 AAAAAAGTTTAAGTACTAAATTAAGAAAAACTGTCAAGTTCAAGTACCAAATTGAGC-CC
1 AAAAAAGTTTAAGTACTAAATTAGGAAAAACTGTCAAGTTCAAATACCAAATTGAGCAAA
* * * *
25997958 CAAAAAGTTTAAGTA-TCAAATTAGGAAAAAGTGTTAAGTTCAAATACTAAATT-AGACAAA
1 AAAAAAGTTTAAGTACT-AAATTAGGAAAAACTGTCAAGTTCAAATACCAAATTGAG-CAAA
* *
25998018 AAAAAAGTCTAGGTACTAAATTAGGAAAAA
1 AAAAAAGTTTAAGTACTAAATTAGGAAAAA
25998048 AATTTCAAAT
Statistics
Matches: 75, Mismatches: 11, Indels: 7
0.81 0.12 0.08
Matches are distributed among these distances:
58 3 0.04
59 46 0.61
60 25 0.33
61 1 0.01
ACGTcount: A:0.51, C:0.11, G:0.14, T:0.24
Consensus pattern (60 bp):
AAAAAAGTTTAAGTACTAAATTAGGAAAAACTGTCAAGTTCAAATACCAAATTGAGCAAA
Found at i:25999187 original size:2 final size:2
Alignment explanation
Indices: 25999134--25999167 Score: 54
Period size: 2 Copynumber: 18.0 Consensus size: 2
25999124 TATTCACTCC
25999134 AT AT AT -T A- AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
25999168 TAGATTCACC
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
1 2 0.07
2 28 0.93
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:26000893 original size:19 final size:19
Alignment explanation
Indices: 26000869--26000906 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
26000859 TCCGTGACAG
26000869 TGTTAAATTTATCAGGTAC
1 TGTTAAATTTATCAGGTAC
*
26000888 TGTTAAATTTATTAGGTAC
1 TGTTAAATTTATCAGGTAC
26000907 CATGTATTGG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.32, C:0.08, G:0.16, T:0.45
Consensus pattern (19 bp):
TGTTAAATTTATCAGGTAC
Found at i:26021582 original size:27 final size:27
Alignment explanation
Indices: 26021552--26021730 Score: 259
Period size: 27 Copynumber: 6.6 Consensus size: 27
26021542 TTAGTTTACC
*
26021552 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
* * * * *
26021579 AAATTACTAAACTACCCTTGGTTTATA
1 AAATTACCAAAATACCCCTAGTTTGTA
26021606 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
*
26021633 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
*
26021660 AAATTATCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
* *
26021687 AAATTACCAAAATACCCCTAATTTGTG
1 AAATTACCAAAATACCCCTAGTTTGTA
*
26021714 AAATTACTAAAATACCC
1 AAATTACCAAAATACCC
26021731 TCGACCTGTA
Statistics
Matches: 136, Mismatches: 16, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 136 1.00
ACGTcount: A:0.40, C:0.21, G:0.08, T:0.31
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTAGTTTGTA
Found at i:26021689 original size:81 final size:81
Alignment explanation
Indices: 26021552--26021784 Score: 283
Period size: 81 Copynumber: 2.9 Consensus size: 81
26021542 TTAGTTTACC
* * * *
26021552 AAATTACCAAAATACCCCTGGTTTGTAAAATTA-CTAAACTACCCTTGGTTTATAAAATTACCAA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTATC-AAAATACCCCTAGTTTGTAAAATTACCAA
*
26021616 AATACCCCTAGTTTGTA
65 AATACCCCTAATTTGTA
26021633 AAATTACCAAAATACCCCTGGTTTGTAAAATTATCAAAATACCCCTAGTTTGTAAAATTACCAAA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTATCAAAATACCCCTAGTTTGTAAAATTACCAAA
*
26021698 ATACCCCTAATTTGTG
66 ATACCCCTAATTTGTA
* *** ** * *
26021714 AAATTACTAAAATA-CCCTCGACCTGTAAAATTATTGAAATA-CCCTCGACTTGTAAAATTACCA
1 AAATTACCAAAATACCCCT-GGTTTGTAAAATTATCAAAATACCCCTAG-TTTGTAAAATTACCA
*
26021777 AAGTACCC
64 AAATACCC
26021785 TCGATTTATA
Statistics
Matches: 134, Mismatches: 15, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
80 9 0.07
81 124 0.93
82 1 0.01
ACGTcount: A:0.39, C:0.22, G:0.09, T:0.30
Consensus pattern (81 bp):
AAATTACCAAAATACCCCTGGTTTGTAAAATTATCAAAATACCCCTAGTTTGTAAAATTACCAAA
ATACCCCTAATTTGTA
Found at i:26021744 original size:27 final size:27
Alignment explanation
Indices: 26021552--26021802 Score: 179
Period size: 27 Copynumber: 9.3 Consensus size: 27
26021542 TTAGTTTACC
**
26021552 AAATTACCAAAATACCC-CTGGTTTGTA
1 AAATTACCAAAATACCCTC-GACTTGTA
* * * ** *
26021579 AAATTACTAAACTACCCTTGGTTTATA
1 AAATTACCAAAATACCCTCGACTTGTA
* *
26021606 AAATTACCAAAATACCC-CTAGTTTGTA
1 AAATTACCAAAATACCCTCGA-CTTGTA
**
26021633 AAATTACCAAAATACCC-CTGGTTTGTA
1 AAATTACCAAAATACCCTC-GACTTGTA
* * *
26021660 AAATTATCAAAATACCC-CTAGTTTGTA
1 AAATTACCAAAATACCCTCGA-CTTGTA
* * *
26021687 AAATTACCAAAATACCC-CTAATTTGTG
1 AAATTACCAAAATACCCTC-GACTTGTA
* *
26021714 AAATTACTAAAATACCCTCGACCTGTA
1 AAATTACCAAAATACCCTCGACTTGTA
***
26021741 AAATTATTGAAATACCCTCGACTTGTA
1 AAATTACCAAAATACCCTCGACTTGTA
* * *
26021768 AAATTACCAAAGTACCCTCGATTTATA
1 AAATTACCAAAATACCCTCGACTTGTA
*
26021795 GAATTACC
1 AAATTACC
26021803 GTTTTACCCT
Statistics
Matches: 185, Mismatches: 33, Indels: 12
0.80 0.14 0.05
Matches are distributed among these distances:
27 183 0.99
28 2 0.01
ACGTcount: A:0.39, C:0.22, G:0.09, T:0.31
Consensus pattern (27 bp):
AAATTACCAAAATACCCTCGACTTGTA
Found at i:26021810 original size:27 final size:27
Alignment explanation
Indices: 26021780--26021991 Score: 300
Period size: 27 Copynumber: 7.9 Consensus size: 27
26021770 ATTACCAAAG
*
26021780 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
*
26021807 TACCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
*
26021834 TACCCTCAATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
26021861 TA-CCTCCGATTTATAGAATTACTGTTT
1 TACCCT-CGATTTACAGAATTACCGTTT
*
26021888 TACCCTCGATTTACAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
26021915 TACCCTCGATTTACAAAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* * *
26021942 TACCCTCAATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
*
26021969 TACCCTCGATTTACAAAATTACC
1 TACCCTCGATTTACAGAATTACC
26021992 AAAATACCCT
Statistics
Matches: 163, Mismatches: 20, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
26 3 0.02
27 157 0.96
28 3 0.02
ACGTcount: A:0.29, C:0.23, G:0.08, T:0.40
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACCGTTT
Found at i:26021827 original size:81 final size:79
Alignment explanation
Indices: 26021753--26021989 Score: 273
Period size: 81 Copynumber: 2.9 Consensus size: 79
26021743 ATTATTGAAA
* **** *
26021753 TACCCTCGACTTGTAAAATTACCAAAGTACCCTCGATTTATAGAATTACCGTTTTACCCTCGATT
1 TACCCTCGAATT-TAAAATTACCGTTTTACCCTCGATTTATAGAATTACTGTTTTACCCTCGATT
*
26021818 TACAGAATTACTGTTT
65 TACAGAATTA-TGATT
26021834 TACCCTC-AATTTACAGAATTACCGTTTTA-CCTCCGATTTATAGAATTACTGTTTTACCCTCGA
1 TACCCTCGAATTTA-A-AATTACCGTTTTACCCT-CGATTTATAGAATTACTGTTTTACCCTCGA
**
26021897 TTTACAGAATTACCATTT
63 TTTACAGAATTATGA-TT
* *
26021915 TACCCTCG-ATTTACAAAATTACTGTTTTACCCTCAATTTATAGAATTACTGTTTTACCCTCGAT
1 TACCCTCGAATTT--AAAATTACCGTTTTACCCTCGATTTATAGAATTACTGTTTTACCCTCGAT
*
26021979 TTACAAAATTA
64 TTACAGAATTA
26021990 CCAAAATACC
Statistics
Matches: 136, Mismatches: 12, Indels: 16
0.83 0.07 0.10
Matches are distributed among these distances:
79 2 0.01
80 7 0.05
81 122 0.90
82 4 0.03
83 1 0.01
ACGTcount: A:0.30, C:0.23, G:0.09, T:0.38
Consensus pattern (79 bp):
TACCCTCGAATTTAAAATTACCGTTTTACCCTCGATTTATAGAATTACTGTTTTACCCTCGATTT
ACAGAATTATGATT
Found at i:26022001 original size:81 final size:81
Alignment explanation
Indices: 26021780--26021992 Score: 338
Period size: 81 Copynumber: 2.6 Consensus size: 81
26021770 ATTACCAAAG
* **
26021780 TACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTACAGAATTACTGTTTTACCCTCAATT
1 TACCCTCGATTTATAGAATTACTGTTTTACCCTCGATTTACAGAATTACCATTTTACCCTCAATT
*
26021845 TACAGAATTACCGTTT
66 TACAAAATTACCGTTT
*
26021861 TA-CCTCCGATTTATAGAATTACTGTTTTACCCTCGATTTACAGAATTACCATTTTACCCTCGAT
1 TACCCT-CGATTTATAGAATTACTGTTTTACCCTCGATTTACAGAATTACCATTTTACCCTCAAT
*
26021925 TTACAAAATTACTGTTT
65 TTACAAAATTACCGTTT
* *
26021942 TACCCTCAATTTATAGAATTACTGTTTTACCCTCGATTTACAAAATTACCA
1 TACCCTCGATTTATAGAATTACTGTTTTACCCTCGATTTACAGAATTACCA
26021993 AAATACCCTT
Statistics
Matches: 122, Mismatches: 8, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
80 3 0.02
81 116 0.95
82 3 0.02
ACGTcount: A:0.29, C:0.23, G:0.08, T:0.39
Consensus pattern (81 bp):
TACCCTCGATTTATAGAATTACTGTTTTACCCTCGATTTACAGAATTACCATTTTACCCTCAATT
TACAAAATTACCGTTT
Found at i:26022023 original size:27 final size:27
Alignment explanation
Indices: 26021988--26022264 Score: 281
Period size: 27 Copynumber: 10.0 Consensus size: 27
26021978 TTTACAAAAT
*
26021988 TACCAAAATACCCTTGTAGGGTAGAAA
1 TACCGAAATACCCTTGTAGGGTAGAAA
*
26022015 TGCCGAAATACCCTTGTAGGGTAGAAA
1 TACCGAAATACCCTTGTAGGGTAGAAA
26022042 TACCGAAATACCCTTGTAGGGTAGAAA
1 TACCGAAATACCCTTGTAGGGTAGAAA
* *
26022069 TACCGAAATACCGAAATACCCTGTAGGATAGAAA
1 TACCGAAATA-C------CCTTGTAGGGTAGAAA
* * *
26022103 TACTGAAATACCCCTGTAGGGTAGAAT
1 TACCGAAATACCCTTGTAGGGTAGAAA
** *
26022130 TACTAAAATAACCC-TGTAGGGTAGAAT
1 TACCGAAAT-ACCCTTGTAGGGTAGAAA
26022157 TACCGAAATACCCTTGTAGGGTAGAAA
1 TACCGAAATACCCTTGTAGGGTAGAAA
* * *
26022184 TACCTAAAAACCCTTGTAGGGTAGAAT
1 TACCGAAATACCCTTGTAGGGTAGAAA
* * * *
26022211 TACTGAAATACTCC-TATAAGGTAGAAT
1 TACCGAAATAC-CCTTGTAGGGTAGAAA
* *
26022238 TACCGAGATACCCTTGTGGGGTA-AAA
1 TACCGAAATACCCTTGTAGGGTAGAAA
26022264 T
1 T
26022265 GGCAGGTGTT
Statistics
Matches: 213, Mismatches: 26, Indels: 23
0.81 0.10 0.09
Matches are distributed among these distances:
26 9 0.04
27 173 0.81
28 7 0.03
33 1 0.00
34 23 0.11
ACGTcount: A:0.38, C:0.18, G:0.21, T:0.24
Consensus pattern (27 bp):
TACCGAAATACCCTTGTAGGGTAGAAA
Found at i:26022101 original size:34 final size:35
Alignment explanation
Indices: 26022038--26022114 Score: 129
Period size: 34 Copynumber: 2.2 Consensus size: 35
26022028 TTGTAGGGTA
*
26022038 GAAATACCGAAATACCCTTGTAGGGTAGAAATACC
1 GAAATACCGAAATACCCTTGTAGGATAGAAATACC
*
26022073 GAAATACCGAAATACCC-TGTAGGATAGAAATACT
1 GAAATACCGAAATACCCTTGTAGGATAGAAATACC
26022107 GAAATACC
1 GAAATACC
26022115 CCTGTAGGGT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
34 23 0.57
35 17 0.43
ACGTcount: A:0.43, C:0.19, G:0.18, T:0.19
Consensus pattern (35 bp):
GAAATACCGAAATACCCTTGTAGGATAGAAATACC
Found at i:26022779 original size:6 final size:6
Alignment explanation
Indices: 26022770--26022956 Score: 134
Period size: 6 Copynumber: 30.3 Consensus size: 6
26022760 TTGCATTCAC
* *
26022770 ATTCTG ATTCTG ATTCTG -TTACCTG ATACTG ATTCTG ATTCTG -TTACCTA
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATT--CTG
* * *
26022820 ATTCTG ATTCTG GTTCTG ATTCTG GTTCT- ATTACCTG ATACTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG
* * * *
26022869 ATTCTG -TTACCTA ATTCTG ATTCTG ATTTTG ATTTTG ATTCT- ATCACCTG
1 ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG
* *
26022919 ATTCTG ATTCTG ATTCTC ATTTTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG AT
26022957 AATGTTTCTT
Statistics
Matches: 144, Mismatches: 20, Indels: 34
0.73 0.10 0.17
Matches are distributed among these distances:
5 11 0.08
6 112 0.78
7 12 0.08
8 9 0.06
ACGTcount: A:0.19, C:0.18, G:0.14, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:26022801 original size:25 final size:25
Alignment explanation
Indices: 26022773--26022837 Score: 103
Period size: 25 Copynumber: 2.6 Consensus size: 25
26022763 CATTCACATT
*
26022773 CTGATTCTGATTCTGTTACCTGATA
1 CTGATTCTGATTCTGTTACCTAATA
*
26022798 CTGATTCTGATTCTGTTACCTAATT
1 CTGATTCTGATTCTGTTACCTAATA
*
26022823 CTGATTCTGGTTCTG
1 CTGATTCTGATTCTG
26022838 ATTCTGGTTC
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
25 37 1.00
ACGTcount: A:0.17, C:0.20, G:0.17, T:0.46
Consensus pattern (25 bp):
CTGATTCTGATTCTGTTACCTAATA
Found at i:26022839 original size:37 final size:37
Alignment explanation
Indices: 26022792--26022874 Score: 112
Period size: 37 Copynumber: 2.2 Consensus size: 37
26022782 ATTCTGTTAC
* * *
26022792 CTGATACTGATTCTGATTCTGTTACCTAATTCTGATT
1 CTGATTCTGATTCTGATTCTATTACCTAATACTGATT
* * *
26022829 CTGGTTCTGATTCTGGTTCTATTACCTGATACTGATT
1 CTGATTCTGATTCTGATTCTATTACCTAATACTGATT
26022866 CTGATTCTG
1 CTGATTCTG
26022875 TTACCTAATT
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
37 39 1.00
ACGTcount: A:0.18, C:0.19, G:0.17, T:0.46
Consensus pattern (37 bp):
CTGATTCTGATTCTGATTCTATTACCTAATACTGATT
Found at i:26022863 original size:25 final size:25
Alignment explanation
Indices: 26022835--26022896 Score: 88
Period size: 25 Copynumber: 2.5 Consensus size: 25
26022825 GATTCTGGTT
* *
26022835 CTGATTCTGGTTCTATTACCTGATA
1 CTGATTCTGATTCTATTACCTAATA
* *
26022860 CTGATTCTGATTCTGTTACCTAATT
1 CTGATTCTGATTCTATTACCTAATA
26022885 CTGATTCTGATT
1 CTGATTCTGATT
26022897 TTGATTTTGA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 33 1.00
ACGTcount: A:0.19, C:0.19, G:0.15, T:0.47
Consensus pattern (25 bp):
CTGATTCTGATTCTATTACCTAATA
Found at i:26022868 original size:62 final size:62
Alignment explanation
Indices: 26022770--26022935 Score: 269
Period size: 62 Copynumber: 2.7 Consensus size: 62
26022760 TTGCATTCAC
*
26022770 ATTCTGATTCTGATTCTGTTACCTGATACTGATTCTGATTCTGTTACCTAATTCTGATTCTG
1 ATTCTGATTCTGATTCTATTACCTGATACTGATTCTGATTCTGTTACCTAATTCTGATTCTG
* *
26022832 GTTCTGATTCTGGTTCTATTACCTGATACTGATTCTGATTCTGTTACCTAATTCTGATTCTG
1 ATTCTGATTCTGATTCTATTACCTGATACTGATTCTGATTCTGTTACCTAATTCTGATTCTG
* * * *
26022894 ATTTTGATTTTGATTCTATCACCTGATTCTGATTCTGATTCT
1 ATTCTGATTCTGATTCTATTACCTGATACTGATTCTGATTCT
26022936 CATTTTGATT
Statistics
Matches: 95, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
62 95 1.00
ACGTcount: A:0.19, C:0.19, G:0.14, T:0.48
Consensus pattern (62 bp):
ATTCTGATTCTGATTCTATTACCTGATACTGATTCTGATTCTGTTACCTAATTCTGATTCTG
Found at i:26022895 original size:37 final size:37
Alignment explanation
Indices: 26022854--26022948 Score: 127
Period size: 37 Copynumber: 2.6 Consensus size: 37
26022844 GTTCTATTAC
* * * *
26022854 CTGATACTGATTCTGATTCTGTTACCTAATTCTGATT
1 CTGATTCTGATTTTGATTCTATCACCTAATTCTGATT
* *
26022891 CTGATTTTGATTTTGATTCTATCACCTGATTCTGATT
1 CTGATTCTGATTTTGATTCTATCACCTAATTCTGATT
*
26022928 CTGATTCTCATTTTGATTCTA
1 CTGATTCTGATTTTGATTCTA
26022949 GTTCTGATAA
Statistics
Matches: 50, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
37 50 1.00
ACGTcount: A:0.20, C:0.18, G:0.13, T:0.49
Consensus pattern (37 bp):
CTGATTCTGATTTTGATTCTATCACCTAATTCTGATT
Found at i:26022926 original size:19 final size:18
Alignment explanation
Indices: 26022860--26022929 Score: 61
Period size: 19 Copynumber: 3.8 Consensus size: 18
26022850 TTACCTGATA
*
26022860 CTGATTCTGATTCTGTTAC
1 CTGATTCTGATTCT-ATAC
* *
26022879 CTAATTCTGATTCTGAT-T
1 CTGATTCTGATTCT-ATAC
* *
26022897 TTGATTTTGATTCTATCAC
1 CTGATTCTGATTCTAT-AC
26022916 CTGATTCTGATTCT
1 CTGATTCTGATTCT
26022930 GATTCTCATT
Statistics
Matches: 40, Mismatches: 9, Indels: 4
0.75 0.17 0.08
Matches are distributed among these distances:
17 2 0.05
18 11 0.28
19 27 0.68
ACGTcount: A:0.19, C:0.19, G:0.13, T:0.50
Consensus pattern (18 bp):
CTGATTCTGATTCTATAC
Found at i:26024962 original size:27 final size:27
Alignment explanation
Indices: 26024932--26025072 Score: 210
Period size: 27 Copynumber: 5.2 Consensus size: 27
26024922 TTAGTTTACC
26024932 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * *
26024959 AAATTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
26024986 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
26025013 AAATTATCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
26025040 AAATTACCAAAATACCCCTGATTTGTG
1 AAATTACCAAAATACCCCTGGTTTGTA
26025067 AAATTA
1 AAATTA
26025073 TTGAACTACC
Statistics
Matches: 102, Mismatches: 12, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 102 1.00
ACGTcount: A:0.40, C:0.19, G:0.09, T:0.32
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGGTTTGTA
Found at i:26025083 original size:81 final size:81
Alignment explanation
Indices: 26024932--26025155 Score: 229
Period size: 81 Copynumber: 2.8 Consensus size: 81
26024922 TTAGTTTACC
* * * * *
26024932 AAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTGGTTTATAAAATTACCAAA
1 AAATTATCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTGATTTATAAAATTACCAAA
**
26024997 ATACCCCTAG-TTTGTA
66 ATA-CCCTAGACCTGTA
* * ***
26025013 AAATTATCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTGATTTGTGAAATTATTGAA
1 AAATTATCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTGATTTATAAAATTACCAAA
* *
26025078 CTACCCTCGACCTGTA
66 ATACCCTAGACCTGTA
** * * *
26025094 AAATTATTGAAATA-CCCTCGACTTGTAAAATTACCAAAGTA-CCCTCGATTTATAAAATTACC
1 AAATTATCAAAATACCCCTAG-TTTGTAAAATTACCAAAATACCCCT-GATTTATAAAATTACC
26025156 GTTTTACCCT
Statistics
Matches: 117, Mismatches: 23, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
80 14 0.12
81 103 0.88
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.31
Consensus pattern (81 bp):
AAATTATCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTGATTTATAAAATTACCAAA
ATACCCTAGACCTGTA
Found at i:26025094 original size:54 final size:54
Alignment explanation
Indices: 26024932--26025155 Score: 220
Period size: 54 Copynumber: 4.1 Consensus size: 54
26024922 TTAGTTTACC
* * * * *
26024932 AAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCCTGATTTGTAAAATTATTAAAATACCCTCGATTTGTA
* *
26024986 AAATTACCAAAATACCCCT-AGTTTGTAAAATTATCAAAATACCC-CTAGTTTGTA
1 AAATTACCAAAATACCCCTGA-TTTGTAAAATTATTAAAATACCCTCGA-TTTGTA
* * * **
26025040 AAATTACCAAAATACCCCTGATTTGTGAAATTATTGAACTACCCTCGACCTGTA
1 AAATTACCAAAATACCCCTGATTTGTAAAATTATTAAAATACCCTCGATTTGTA
*** * ** * *
26025094 AAATTATTGAAATA-CCCTCGACTTGTAAAATTACCAAAGTACCCTCGATTTATA
1 AAATTACCAAAATACCCCT-GATTTGTAAAATTATTAAAATACCCTCGATTTGTA
26025148 AAATTACC
1 AAATTACC
26025156 GTTTTACCCT
Statistics
Matches: 137, Mismatches: 28, Indels: 10
0.78 0.16 0.06
Matches are distributed among these distances:
53 4 0.03
54 130 0.95
55 3 0.02
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.31
Consensus pattern (54 bp):
AAATTACCAAAATACCCCTGATTTGTAAAATTATTAAAATACCCTCGATTTGTA
Found at i:26025136 original size:27 final size:26
Alignment explanation
Indices: 26024932--26025155 Score: 187
Period size: 27 Copynumber: 8.3 Consensus size: 26
26024922 TTAGTTTACC
*
26024932 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCC-GATTTGTA
* * * *
26024959 AAATTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCC-CGATTTGTA
*
26024986 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCGA-TTTGTA
* *
26025013 AAATTATCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCGA-TTTGTA
*
26025040 AAATTACCAAAATACCCCTGATTTGTG
1 AAATTACCAAAATACCCC-GATTTGTA
*** * **
26025067 AAATTATTGAACTACCCTCGACCTGTA
1 AAATTACCAAAATACCC-CGATTTGTA
*** *
26025094 AAATTATTGAAATACCCTCGACTTGTA
1 AAATTACCAAAATACCC-CGATTTGTA
* *
26025121 AAATTACCAAAGTACCCTCGATTTATA
1 AAATTACCAAAATACCC-CGATTTGTA
26025148 AAATTACC
1 AAATTACC
26025156 GTTTTACCCT
Statistics
Matches: 166, Mismatches: 27, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
27 164 0.99
28 2 0.01
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.31
Consensus pattern (26 bp):
AAATTACCAAAATACCCCGATTTGTA
Found at i:26025163 original size:27 final size:27
Alignment explanation
Indices: 26025133--26025288 Score: 204
Period size: 27 Copynumber: 5.8 Consensus size: 27
26025123 ATTACCAAAG
*
26025133 TACCCTCGATTTATAAAATTACCGTTT
1 TACCCTCGATTTACAAAATTACCGTTT
* *
26025160 TACCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACCGTTT
* *
26025187 TACCCTCGATTTACAGAATTATCGTTT
1 TACCCTCGATTTACAAAATTACCGTTT
* * *
26025214 TACTCTCGACTTACAAAATTACTGTTT
1 TACCCTCGATTTACAAAATTACCGTTT
* * * *
26025241 TACCTTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACCGTTT
26025268 TACCCTCGATTTACAAAATTA
1 TACCCTCGATTTACAAAATTA
26025289 TCGAAATACC
Statistics
Matches: 111, Mismatches: 18, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 111 1.00
ACGTcount: A:0.29, C:0.21, G:0.09, T:0.41
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACCGTTT
Found at i:26025164 original size:54 final size:53
Alignment explanation
Indices: 26025106--26025280 Score: 192
Period size: 54 Copynumber: 3.3 Consensus size: 53
26025096 ATTATTGAAA
***** *
26025106 TACCCTCGACTTGTAAAATTACCAAAGTACCCTCGATTTATAAAATTACCGTTT
1 TACCCTCGACTT-TAAAATTACTGTTTTACCCTCGATTTATAGAATTACCGTTT
* *
26025160 TACCCTCGA-TTTACAGAATTACTGTTTTACCCTCGATTTACAGAATTATCGTTT
1 TACCCTCGACTTTA-A-AATTACTGTTTTACCCTCGATTTATAGAATTACCGTTT
* * * *
26025214 TACTCTCGACTTACAAAATTACTGTTTTACCTTCGATTTATAGAATTACTGTTT
1 TACCCTCGACTT-TAAAATTACTGTTTTACCCTCGATTTATAGAATTACCGTTT
26025268 TACCCTCGA-TTTA
1 TACCCTCGACTTTA
26025281 CAAAATTATC
Statistics
Matches: 101, Mismatches: 16, Indels: 10
0.80 0.13 0.08
Matches are distributed among these distances:
52 3 0.03
53 5 0.05
54 89 0.88
55 3 0.03
56 1 0.01
ACGTcount: A:0.29, C:0.22, G:0.10, T:0.39
Consensus pattern (53 bp):
TACCCTCGACTTTAAAATTACTGTTTTACCCTCGATTTATAGAATTACCGTTT
Found at i:26025191 original size:81 final size:81
Alignment explanation
Indices: 26025106--26025288 Score: 226
Period size: 81 Copynumber: 2.3 Consensus size: 81
26025096 ATTATTGAAA
* *
26025106 TACCCTCGACTTGTA-A-AATTACCAAAGTACCCTCGATTTATAAAATTACCGTTTTACCCTCGA
1 TACCCTCGA-TT-TACAGAATTACCAAAGTACCCTCGACTTACAAAATTACCGTTTTACCCTCGA
26025169 TTTACAGAATTACTGTTT
64 TTTACAGAATTACTGTTT
* **** * * *
26025187 TACCCTCGATTTACAGAATTATCGTTTTACTCTCGACTTACAAAATTACTGTTTTACCTTCGATT
1 TACCCTCGATTTACAGAATTACCAAAGTACCCTCGACTTACAAAATTACCGTTTTACCCTCGATT
*
26025252 TATAGAATTACTGTTT
66 TACAGAATTACTGTTT
*
26025268 TACCCTCGATTTACAAAATTA
1 TACCCTCGATTTACAGAATTA
26025289 TCGAAATACC
Statistics
Matches: 88, Mismatches: 12, Indels: 4
0.85 0.12 0.04
Matches are distributed among these distances:
79 2 0.02
80 3 0.03
81 83 0.94
ACGTcount: A:0.30, C:0.22, G:0.09, T:0.39
Consensus pattern (81 bp):
TACCCTCGATTTACAGAATTACCAAAGTACCCTCGACTTACAAAATTACCGTTTTACCCTCGATT
TACAGAATTACTGTTT
Found at i:26025282 original size:54 final size:54
Alignment explanation
Indices: 26025133--26025288 Score: 233
Period size: 54 Copynumber: 2.9 Consensus size: 54
26025123 ATTACCAAAG
* * *
26025133 TACCCTCGATTTATAAAATTACCGTTTTACCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTATAGAATTACTGTTTTACCCTCGATTTACAAAATTACTGTTT
* * *
26025187 TACCCTCGATTTACAGAATTA-TCGTTTTACTCTCGACTTACAAAATTACTGTTT
1 TACCCTCGATTTATAGAATTACT-GTTTTACCCTCGATTTACAAAATTACTGTTT
*
26025241 TACCTTCGATTTATAGAATTACTGTTTTACCCTCGATTTACAAAATTA
1 TACCCTCGATTTATAGAATTACTGTTTTACCCTCGATTTACAAAATTA
26025289 TCGAAATACC
Statistics
Matches: 90, Mismatches: 10, Indels: 4
0.87 0.10 0.04
Matches are distributed among these distances:
54 89 0.99
55 1 0.01
ACGTcount: A:0.29, C:0.21, G:0.09, T:0.41
Consensus pattern (54 bp):
TACCCTCGATTTATAGAATTACTGTTTTACCCTCGATTTACAAAATTACTGTTT
Found at i:26025289 original size:81 final size:81
Alignment explanation
Indices: 26025137--26025291 Score: 256
Period size: 81 Copynumber: 1.9 Consensus size: 81
26025127 CCAAAGTACC
* *
26025137 CTCGATTTATAAAATTACCGTTTTACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTACA
1 CTCGACTTACAAAATTACCGTTTTACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTACA
*
26025202 GAATTATCGTTTTACT
66 AAATTATCGTTTTACT
* * *
26025218 CTCGACTTACAAAATTACTGTTTTACCTTCGATTTATAGAATTACTGTTTTACCCTCGATTTACA
1 CTCGACTTACAAAATTACCGTTTTACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTACA
26025283 AAATTATCG
66 AAATTATCG
26025292 AAATACCATT
Statistics
Matches: 68, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
81 68 1.00
ACGTcount: A:0.28, C:0.21, G:0.10, T:0.41
Consensus pattern (81 bp):
CTCGACTTACAAAATTACCGTTTTACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTACA
AAATTATCGTTTTACT
Found at i:26025320 original size:27 final size:27
Alignment explanation
Indices: 26025290--26025515 Score: 256
Period size: 27 Copynumber: 8.4 Consensus size: 27
26025280 ACAAAATTAT
** *
26025290 CGAAATACCATTGTAGGGTAGAAATGC
1 CGAAATACCCCTGTAGGGTAGAAATAC
* *
26025317 CGAAATAACCTTGTAGGGTAGAAATAC
1 CGAAATACCCCTGTAGGGTAGAAATAC
*
26025344 CGAAATACCCCTGTAGGGTAAAAATAC
1 CGAAATACCCCTGTAGGGTAGAAATAC
*
26025371 CGAAATACCCCTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAAATAC
** *
26025398 TAAAATACCCCTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAAATAC
* *
26025425 TGAAATACCCTTGTAGGGTAGAAATAC
1 CGAAATACCCCTGTAGGGTAGAAATAC
* * * *
26025452 CTAAATGCCCCTGTAAGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAAATAC
* * *
26025479 TGAAATACTCCTGTAAGGTA-AAATTAC
1 CGAAATACCCCTGTAGGGTAGAAA-TAC
*
26025506 CGAGATACCC
1 CGAAATACCC
26025516 TTGTGAGGTA
Statistics
Matches: 171, Mismatches: 27, Indels: 2
0.86 0.14 0.01
Matches are distributed among these distances:
26 2 0.01
27 169 0.99
ACGTcount: A:0.37, C:0.19, G:0.20, T:0.23
Consensus pattern (27 bp):
CGAAATACCCCTGTAGGGTAGAAATAC
Found at i:26025810 original size:27 final size:26
Alignment explanation
Indices: 26025766--26025817 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
26025756 CTCGCTGCAA
*
26025766 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
26025793 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
26025818 GTAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:26026045 original size:6 final size:6
Alignment explanation
Indices: 26026036--26026222 Score: 116
Period size: 6 Copynumber: 30.3 Consensus size: 6
26026026 TTGCATTCAC
* * *
26026036 ATTCTG ATTCTA ATTCTG -TTACCTG ATACTG ATTCTG ATTCTG -TTACCTA
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATT--CTG
* *
26026086 ATTCTG ATTCTG GTTCTG ATTCTG ATTCTG -TTACCTG ATACTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG
* * * * * *
26026135 ATTTTG -TTACCTA ATTCTG TTTCTG ATTTTG ATTTTG ATTCTG -TCACCTG
1 ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG
* *
26026185 ATTCTG ATTCTG ATTCTT ATTTTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG AT
26026223 AATGTTTCTT
Statistics
Matches: 140, Mismatches: 24, Indels: 34
0.71 0.12 0.17
Matches are distributed among these distances:
5 10 0.07
6 110 0.79
7 13 0.09
8 7 0.05
ACGTcount: A:0.18, C:0.17, G:0.14, T:0.50
Consensus pattern (6 bp):
ATTCTG
Found at i:26026070 original size:19 final size:19
Alignment explanation
Indices: 26026064--26026196 Score: 103
Period size: 19 Copynumber: 6.8 Consensus size: 19
26026054 TTACCTGATA
26026064 CTGATTCTGATTCTGTTAC
1 CTGATTCTGATTCTGTTAC
*
26026083 CTAATTCTGATTCTGGTT--
1 CTGATTCTGATTCT-GTTAC
26026101 CTGATTCTGATTCTGTTACC
1 CTGATTCTGATTCTGTTA-C
*
26026121 TGATACTGATTCTGATTTTGTTAC
1 -----CTGATTCTGATTCTGTTAC
* *
26026145 CTAATTCTGTTTCTGATT--
1 CTGATTCTGATTCTG-TTAC
* * *
26026163 TTGATTTTGATTCTGTCAC
1 CTGATTCTGATTCTGTTAC
26026182 CTGATTCTGATTCTG
1 CTGATTCTGATTCTG
26026197 ATTCTTATTT
Statistics
Matches: 89, Mismatches: 13, Indels: 24
0.71 0.10 0.19
Matches are distributed among these distances:
17 4 0.04
18 24 0.27
19 38 0.43
20 5 0.06
24 1 0.01
25 17 0.19
ACGTcount: A:0.17, C:0.18, G:0.16, T:0.50
Consensus pattern (19 bp):
CTGATTCTGATTCTGTTAC
Found at i:26026097 original size:25 final size:25
Alignment explanation
Indices: 26026036--26026103 Score: 100
Period size: 25 Copynumber: 2.7 Consensus size: 25
26026026 TTGCATTCAC
* *
26026036 ATTCTGATTCTAATTCTGTTACCTG
1 ATTCTGATTCTGATTCTGTTACCTA
*
26026061 ATACTGATTCTGATTCTGTTACCTA
1 ATTCTGATTCTGATTCTGTTACCTA
*
26026086 ATTCTGATTCTGGTTCTG
1 ATTCTGATTCTGATTCTG
26026104 ATTCTGATTC
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 38 1.00
ACGTcount: A:0.19, C:0.19, G:0.15, T:0.47
Consensus pattern (25 bp):
ATTCTGATTCTGATTCTGTTACCTA
Found at i:26026105 original size:37 final size:37
Alignment explanation
Indices: 26026064--26026134 Score: 124
Period size: 37 Copynumber: 1.9 Consensus size: 37
26026054 TTACCTGATA
*
26026064 CTGATTCTGATTCTGTTACCTAATTCTGATTCTGGTT
1 CTGATTCTGATTCTGTTACCTAATACTGATTCTGGTT
*
26026101 CTGATTCTGATTCTGTTACCTGATACTGATTCTG
1 CTGATTCTGATTCTGTTACCTAATACTGATTCTG
26026135 ATTTTGTTAC
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 32 1.00
ACGTcount: A:0.17, C:0.20, G:0.17, T:0.46
Consensus pattern (37 bp):
CTGATTCTGATTCTGTTACCTAATACTGATTCTGGTT
Found at i:26026134 original size:62 final size:62
Alignment explanation
Indices: 26026036--26026201 Score: 260
Period size: 62 Copynumber: 2.7 Consensus size: 62
26026026 TTGCATTCAC
*
26026036 ATTCTGATTCTAATTCTGTTACCTGATACTGATTCTGATTCTGTTACCTAATTCTGATTCTG
1 ATTCTGATTCTGATTCTGTTACCTGATACTGATTCTGATTCTGTTACCTAATTCTGATTCTG
* * *
26026098 GTTCTGATTCTGATTCTGTTACCTGATACTGATTCTGATTTTGTTACCTAATTCTGTTTCTG
1 ATTCTGATTCTGATTCTGTTACCTGATACTGATTCTGATTCTGTTACCTAATTCTGATTCTG
* * * *
26026160 ATTTTGATTTTGATTCTGTCACCTGATTCTGATTCTGATTCT
1 ATTCTGATTCTGATTCTGTTACCTGATACTGATTCTGATTCT
26026202 TATTTTGATT
Statistics
Matches: 94, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
62 94 1.00
ACGTcount: A:0.18, C:0.18, G:0.14, T:0.49
Consensus pattern (62 bp):
ATTCTGATTCTGATTCTGTTACCTGATACTGATTCTGATTCTGTTACCTAATTCTGATTCTG
Found at i:26026161 original size:37 final size:37
Alignment explanation
Indices: 26026110--26026213 Score: 100
Period size: 37 Copynumber: 2.8 Consensus size: 37
26026100 TCTGATTCTG
* * *
26026110 ATTCTGTTACCTGATACTGATTCTGATTTTGTTACCTA
1 ATTCTGTT-TCTGATACTGATTCTGATTCTGTCACCTA
** * *
26026148 ATTCTGTTTCTGATTTTGATTTTGATTCTGTCACCTG
1 ATTCTGTTTCTGATACTGATTCTGATTCTGTCACCTA
* * * *
26026185 ATTCTGATTCTGATTCTTATTTTGATTCT
1 ATTCTGTTTCTGATACTGATTCTGATTCT
26026214 AGTTCTGATA
Statistics
Matches: 56, Mismatches: 10, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
37 48 0.86
38 8 0.14
ACGTcount: A:0.17, C:0.16, G:0.13, T:0.53
Consensus pattern (37 bp):
ATTCTGTTTCTGATACTGATTCTGATTCTGTCACCTA
Found at i:26026163 original size:25 final size:25
Alignment explanation
Indices: 26026099--26026165 Score: 98
Period size: 25 Copynumber: 2.7 Consensus size: 25
26026089 CTGATTCTGG
* *
26026099 TTCTGATTCTGATTCTGTTACCTGA
1 TTCTGATTCTGATTTTGTTACCTAA
*
26026124 TACTGATTCTGATTTTGTTACCTAA
1 TTCTGATTCTGATTTTGTTACCTAA
*
26026149 TTCTGTTTCTGATTTTG
1 TTCTGATTCTGATTTTG
26026166 ATTTTGATTC
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 37 1.00
ACGTcount: A:0.16, C:0.16, G:0.15, T:0.52
Consensus pattern (25 bp):
TTCTGATTCTGATTTTGTTACCTAA
Found at i:26026190 original size:31 final size:31
Alignment explanation
Indices: 26026036--26026199 Score: 120
Period size: 31 Copynumber: 5.3 Consensus size: 31
26026026 TTGCATTCAC
* * * *
26026036 ATTCTGATTCTAATTCTGTTACCTGATACTG
1 ATTCTGATTTTGATTCTGTAACCTGATTCTG
* * *
26026067 ATTCTGATTCTG-TTAC-CTAATTCTGATTCTG
1 ATTCTGATTTTGATT-CTGTAA-CCTGATTCTG
* * * *
26026098 GTTCTGATTCTGATTCTGTTACCTGATACTG
1 ATTCTGATTTTGATTCTGTAACCTGATTCTG
* * *
26026129 ATTCTGATTTTG-TTAC-CTAATTCTGTTTCTG
1 ATTCTGATTTTGATT-CTGTAA-CCTGATTCTG
* *
26026160 ATTTTGATTTTGATTCTGTCACCTGATTCTG
1 ATTCTGATTTTGATTCTGTAACCTGATTCTG
26026191 ATTCTGATT
1 ATTCTGATT
26026200 CTTATTTTGA
Statistics
Matches: 102, Mismatches: 23, Indels: 16
0.72 0.16 0.11
Matches are distributed among these distances:
30 8 0.08
31 86 0.84
32 8 0.08
ACGTcount: A:0.18, C:0.18, G:0.15, T:0.49
Consensus pattern (31 bp):
ATTCTGATTTTGATTCTGTAACCTGATTCTG
Found at i:26032596 original size:46 final size:47
Alignment explanation
Indices: 26032544--26032860 Score: 251
Period size: 46 Copynumber: 6.7 Consensus size: 47
26032534 TCACTTGTCT
* *
26032544 GAGCTAGTGTAAGACATGTCTGGGACATGCATTGGCCAC-AATATGA
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACGAAGATGA
* * * * *
26032590 GAGCTAGTGTAAGACCATGTATGGGACGTGGCATCGG-CATGGAGACGA
1 GAGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCACGAAGATGA
* * *
26032638 GTA-CTAGTGTAAGACATGTCTGGGACATGTATCGGCCTCG-AGACGTA
1 G-AGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACGAAGATG-A
* * *
26032685 -AGCCAGTGTAAGACATGTCTGGGACATGCATCGGCTACGAA-ATGT
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACGAAGATGA
* * *
26032730 G-TC-AGTGTAAGATCATGTCTAGGACATGGCATC-GACACGATTATG-TGA
1 GAGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCACGA--A-GATGA
* *
26032778 GAGCTAGTGTAAGACCATGTCCGGGACATGGCATCGGCCTCGAAGATGA
1 GAGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCACGAAGATGA
* * *
26032827 TAGCCAGTGTAAGGCCATGTCT-GGACATGGCATC
1 GAGCTAGTGTAA-GACATGTCTGGGACAT-GCATC
26032861 AGCACCTTAC
Statistics
Matches: 218, Mismatches: 33, Indels: 38
0.75 0.11 0.13
Matches are distributed among these distances:
44 9 0.04
45 20 0.09
46 65 0.30
47 31 0.14
48 38 0.17
49 22 0.10
50 28 0.13
51 5 0.02
ACGTcount: A:0.27, C:0.19, G:0.31, T:0.23
Consensus pattern (47 bp):
GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACGAAGATGA
Found at i:26035239 original size:10 final size:11
Alignment explanation
Indices: 26035219--26035257 Score: 50
Period size: 10 Copynumber: 3.9 Consensus size: 11
26035209 ATTTTTAGCT
26035219 TTTA-TCTTTA
1 TTTATTCTTTA
26035229 TTTATTC-TTA
1 TTTATTCTTTA
26035239 TTTA-TCTTTA
1 TTTATTCTTTA
26035249 TTTA-TCTTT
1 TTTATTCTTT
26035258 TAGAATTTTA
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
9 2 0.07
10 23 0.85
11 2 0.07
ACGTcount: A:0.18, C:0.10, G:0.00, T:0.72
Consensus pattern (11 bp):
TTTATTCTTTA
Found at i:26043759 original size:40 final size:40
Alignment explanation
Indices: 26043704--26043953 Score: 385
Period size: 40 Copynumber: 6.2 Consensus size: 40
26043694 AACATTGGAA
26043704 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
26043744 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
26043784 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
26043824 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
26043864 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
26043903 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
26043944 CTATATCCGG
1 ATATATCCGG
26043954 TTAAATCCCG
Statistics
Matches: 191, Mismatches: 17, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
39 2 0.01
40 189 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:26051862 original size:40 final size:40
Alignment explanation
Indices: 26051807--26052056 Score: 385
Period size: 40 Copynumber: 6.2 Consensus size: 40
26051797 AACATTGGAA
26051807 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
26051847 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
26051887 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
26051927 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
26051967 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
26052006 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
26052047 CTATATCCGG
1 ATATATCCGG
26052057 TTAAATCCCG
Statistics
Matches: 191, Mismatches: 17, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
39 2 0.01
40 189 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:26064275 original size:40 final size:40
Alignment explanation
Indices: 26064220--26064469 Score: 385
Period size: 40 Copynumber: 6.2 Consensus size: 40
26064210 AACATTGGAA
26064220 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
26064260 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
26064300 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
26064340 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
26064380 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
26064419 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
26064460 CTATATCCGG
1 ATATATCCGG
26064470 TTAAATCCCG
Statistics
Matches: 191, Mismatches: 17, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
39 2 0.01
40 189 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:26078035 original size:14 final size:16
Alignment explanation
Indices: 26078003--26078039 Score: 51
Period size: 14 Copynumber: 2.4 Consensus size: 16
26077993 ATTTACATAA
*
26078003 CATATATCACCTATTT
1 CATATATCACCTATGT
26078019 CATATATCA-CT-TGT
1 CATATATCACCTATGT
26078033 CATATAT
1 CATATAT
26078040 TATCATTTCC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
14 9 0.45
15 2 0.10
16 9 0.45
ACGTcount: A:0.32, C:0.22, G:0.03, T:0.43
Consensus pattern (16 bp):
CATATATCACCTATGT
Found at i:26078504 original size:20 final size:18
Alignment explanation
Indices: 26078467--26078517 Score: 59
Period size: 20 Copynumber: 2.7 Consensus size: 18
26078457 CTATAGCAAC
26078467 TCACAATTT-CAATTATT
1 TCACAATTTACAATTATT
26078484 TCACACATTTACAACTTATT
1 TCACA-ATTTACAA-TTATT
*
26078504 TTACAAATTTACAA
1 TCAC-AATTTACAA
26078518 AATAGCCCTT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
17 5 0.17
18 4 0.14
19 3 0.10
20 16 0.55
21 1 0.03
ACGTcount: A:0.39, C:0.20, G:0.00, T:0.41
Consensus pattern (18 bp):
TCACAATTTACAATTATT
Found at i:26089635 original size:29 final size:28
Alignment explanation
Indices: 26089603--26089705 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
26089593 GGGACGAGAT
* *
26089603 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTG-AATATA
* *
26089632 TGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTT-GAATATA
* * *
26089661 TGGCACTATGTGTGCGGGCTTGAATCACA
1 TGGCACTAAGTGTGCGAGCTTGAAT-ATA
26089690 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
26089706 TGATTGAGTA
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 3 0.05
29 58 0.94
30 1 0.02
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (28 bp):
TGGCACTAAGTGTGCGAGCTTGAATATA
Found at i:26093892 original size:47 final size:47
Alignment explanation
Indices: 26093822--26094118 Score: 452
Period size: 47 Copynumber: 6.3 Consensus size: 47
26093812 ATGATATACA
*
26093822 TATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
1 TATATGTGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTG
* *
26093869 TATATATGTGATAAGGCCTAATGGCCCATGTGATGAATGTGAAAGTG
1 TATATGTGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTG
* * *
26093916 TATATGTGTGATAAGGCCGAACGGCCAATGTGATGGATGTGAAAGTG
1 TATATGTGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTG
* *
26093963 TATATATGTGATAAGGCCTAATGGCCCATGTGATGAATGTGAAAGTG
1 TATATGTGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTG
* * *
26094010 TATATGTGTGGTAAGG-CTGAACGGCCAATGTGATGGATGTGAAAGTG
1 TATATGTGTGATAAGGCCT-AATGGCCAATGTGATGAATGTGAAAGTG
* *
26094057 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATGTGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTG
*
26094104 CATATGTGTGATAAG
1 TATATGTGTGATAAG
26094119 TCCCGAAGGG
Statistics
Matches: 223, Mismatches: 25, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
46 2 0.01
47 219 0.98
48 2 0.01
ACGTcount: A:0.31, C:0.09, G:0.31, T:0.29
Consensus pattern (47 bp):
TATATGTGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTG
Found at i:26093983 original size:94 final size:94
Alignment explanation
Indices: 26093822--26094118 Score: 540
Period size: 94 Copynumber: 3.2 Consensus size: 94
26093812 ATGATATACA
* *
26093822 TATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TATATGTGTGATAAGGCCGAACGGCCAATGTGATGGATGTGAAAGTGTATATATGTGATAAGGCC
26093887 TAATGGCCCATGTGATGAATGTGAAAGTG
66 TAATGGCCCATGTGATGAATGTGAAAGTG
26093916 TATATGTGTGATAAGGCCGAACGGCCAATGTGATGGATGTGAAAGTGTATATATGTGATAAGGCC
1 TATATGTGTGATAAGGCCGAACGGCCAATGTGATGGATGTGAAAGTGTATATATGTGATAAGGCC
26093981 TAATGGCCCATGTGATGAATGTGAAAGTG
66 TAATGGCCCATGTGATGAATGTGAAAGTG
* *
26094010 TATATGTGTGGTAAGGCTGAACGGCCAATGTGATGGATGTGAAAGTGTATATATGTGATAAGGCC
1 TATATGTGTGATAAGGCCGAACGGCCAATGTGATGGATGTGAAAGTGTATATATGTGATAAGGCC
*
26094075 TAATGGCCGATGTGATGAATGTGAAAGTG
66 TAATGGCCCATGTGATGAATGTGAAAGTG
*
26094104 CATATGTGTGATAAG
1 TATATGTGTGATAAG
26094119 TCCCGAAGGG
Statistics
Matches: 196, Mismatches: 7, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
94 196 1.00
ACGTcount: A:0.31, C:0.09, G:0.31, T:0.29
Consensus pattern (94 bp):
TATATGTGTGATAAGGCCGAACGGCCAATGTGATGGATGTGAAAGTGTATATATGTGATAAGGCC
TAATGGCCCATGTGATGAATGTGAAAGTG
Found at i:26096291 original size:22 final size:19
Alignment explanation
Indices: 26096265--26096313 Score: 55
Period size: 18 Copynumber: 2.5 Consensus size: 19
26096255 ATACCGTTTC
26096265 AATTAAATTCTTGTCAAAAAAT
1 AATTAAATT-TT-T-AAAAAAT
*
26096287 AATT-AATTTTTATAAAAT
1 AATTAAATTTTTAAAAAAT
26096305 AATTAAATT
1 AATTAAATT
26096314 ATACTTAAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
18 10 0.40
19 5 0.20
20 2 0.08
21 4 0.16
22 4 0.16
ACGTcount: A:0.51, C:0.04, G:0.02, T:0.43
Consensus pattern (19 bp):
AATTAAATTTTTAAAAAAT
Found at i:26099962 original size:25 final size:25
Alignment explanation
Indices: 26099932--26100000 Score: 75
Period size: 25 Copynumber: 2.8 Consensus size: 25
26099922 ATCTATAAAT
* *
26099932 AGTAAGCTCTTCCGAGCTAAATAAC
1 AGTAAGCTCATACGAGCTAAATAAC
* * *
26099957 AGTAAGTTCATACGAGCTAAGTATC
1 AGTAAGCTCATACGAGCTAAATAAC
* *
26099982 AATAAGCTCATAAGAGCTA
1 AGTAAGCTCATACGAGCTA
26100001 GAATCGGTAA
Statistics
Matches: 36, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
25 36 1.00
ACGTcount: A:0.39, C:0.19, G:0.17, T:0.25
Consensus pattern (25 bp):
AGTAAGCTCATACGAGCTAAATAAC
Found at i:26103856 original size:45 final size:45
Alignment explanation
Indices: 26103806--26103893 Score: 149
Period size: 45 Copynumber: 2.0 Consensus size: 45
26103796 CCAAAACATG
* *
26103806 TGCCACATACATCATGAACTTAGACCATAACTCAATGAGTTCATA
1 TGCCACATACATCATGAACTCAGACCACAACTCAATGAGTTCATA
*
26103851 TGCCACATATATCATGAACTCAGACCACAACTCAATGAGTTCA
1 TGCCACATACATCATGAACTCAGACCACAACTCAATGAGTTCA
26103894 GATCACATAG
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 40 1.00
ACGTcount: A:0.38, C:0.26, G:0.11, T:0.25
Consensus pattern (45 bp):
TGCCACATACATCATGAACTCAGACCACAACTCAATGAGTTCATA
Found at i:26112322 original size:45 final size:45
Alignment explanation
Indices: 26112272--26112438 Score: 257
Period size: 45 Copynumber: 3.8 Consensus size: 45
26112262 GTACAATTTA
* *
26112272 GGCCTTTGAGCCTAGCAGGCTATATTGCCGGTGAGATACTATTCG
1 GGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATATTATTCG
* *
26112317 GGCCTTTGAGCCTAGCAGGCTATAATGCCAGTAAGATATTATTCG
1 GGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATATTATTCG
*
26112362 GGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATATTATTTG
1 GGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATATTATTCG
* *
26112407 AGCC-TTGAGCCTAGCAGGCGA-AATGCCGGTGA
1 GGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGA
26112439 ATGAATTCAA
Statistics
Matches: 113, Mismatches: 9, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
43 11 0.10
44 16 0.14
45 86 0.76
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (45 bp):
GGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATATTATTCG
Found at i:26120596 original size:38 final size:38
Alignment explanation
Indices: 26120442--26120596 Score: 168
Period size: 38 Copynumber: 4.1 Consensus size: 38
26120432 TGAATTATAT
** * *
26120442 TGTTATTCGGGCTTTGTGCCTATCAGGCTTAGTGCCGG
1 TGTTATTCAAGCTTTGTGCCTAGCAGGCTTAGTTCCGG
* * * *
26120480 TGTTATTTAGGTTTTGTGCCTAGCAGGCTTAGTACCGG
1 TGTTATTCAAGCTTTGTGCCTAGCAGGCTTAGTTCCGG
* *
26120518 TGTTATTTGAA-CTTTGTGCCTAGCAGGCTTAGTTCTGG
1 TGTTA-TTCAAGCTTTGTGCCTAGCAGGCTTAGTTCCGG
* * * *
26120556 TGTTATTCAAGCTTAGTGCCTAGTAGGCTTATTTTCGG
1 TGTTATTCAAGCTTTGTGCCTAGCAGGCTTAGTTCCGG
26120594 TGT
1 TGT
26120597 AATTAAAGTT
Statistics
Matches: 99, Mismatches: 16, Indels: 4
0.83 0.13 0.03
Matches are distributed among these distances:
37 4 0.04
38 92 0.93
39 3 0.03
ACGTcount: A:0.15, C:0.17, G:0.28, T:0.41
Consensus pattern (38 bp):
TGTTATTCAAGCTTTGTGCCTAGCAGGCTTAGTTCCGG
Found at i:26120758 original size:3 final size:3
Alignment explanation
Indices: 26120750--26120779 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
26120740 AGCTCACACT
26120750 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC
1 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC
26120780 TTTATAGCCA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.33, C:0.33, G:0.00, T:0.33
Consensus pattern (3 bp):
ATC
Found at i:26124844 original size:23 final size:24
Alignment explanation
Indices: 26124818--26124891 Score: 73
Period size: 23 Copynumber: 3.1 Consensus size: 24
26124808 AATATTAATT
26124818 TAAATAATATTTA-AATAAAATAA
1 TAAATAATATTTATAATAAAATAA
**
26124841 TAAAGT-ATA-TTATAATATTATAA
1 TAAA-TAATATTTATAATAAAATAA
*
26124864 TAATATAATATTATATAATAGAATAA
1 TAA-ATAATATT-TATAATAAAATAA
26124890 TA
1 TA
26124892 GATAGAATAA
Statistics
Matches: 41, Mismatches: 4, Indels: 9
0.76 0.07 0.17
Matches are distributed among these distances:
22 3 0.07
23 19 0.46
24 5 0.12
25 1 0.02
26 13 0.32
ACGTcount: A:0.58, C:0.00, G:0.03, T:0.39
Consensus pattern (24 bp):
TAAATAATATTTATAATAAAATAA
Found at i:26124858 original size:8 final size:8
Alignment explanation
Indices: 26124847--26124878 Score: 55
Period size: 8 Copynumber: 4.0 Consensus size: 8
26124837 ATAATAAAGT
26124847 ATATTATA
1 ATATTATA
26124855 ATATTATA
1 ATATTATA
*
26124863 ATAATATA
1 ATATTATA
26124871 ATATTATA
1 ATATTATA
26124879 TAATAGAATA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (8 bp):
ATATTATA
Found at i:26125220 original size:2 final size:2
Alignment explanation
Indices: 26125213--26125248 Score: 56
Period size: 2 Copynumber: 18.0 Consensus size: 2
26125203 AAGTTTACTG
26125213 AT AT AT AT AT AT AT AT AT AT AT AT CA- AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT -AT AT AT AT AT AT
26125249 GATTTTATAT
Statistics
Matches: 32, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
1 1 0.03
2 30 0.94
3 1 0.03
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:26129459 original size:23 final size:23
Alignment explanation
Indices: 26129401--26129464 Score: 69
Period size: 23 Copynumber: 2.7 Consensus size: 23
26129391 AGAACAAAAA
26129401 ATAAAATAAGTTAATCAAAACAATG
1 ATAAAATAA--TAATCAAAACAATG
* *
26129426 ATAACAT-ATAATGAAAGACAATG
1 ATAAAATAATAATCAAA-ACAATG
26129449 A-AAAATAATAATCAAA
1 ATAAAATAATAATCAAA
26129465 TATGAAACAT
Statistics
Matches: 33, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
22 11 0.33
23 15 0.45
24 1 0.03
25 6 0.18
ACGTcount: A:0.62, C:0.08, G:0.08, T:0.22
Consensus pattern (23 bp):
ATAAAATAATAATCAAAACAATG
Found at i:26145736 original size:19 final size:19
Alignment explanation
Indices: 26145690--26145737 Score: 71
Period size: 19 Copynumber: 2.6 Consensus size: 19
26145680 GTATACATTT
26145690 TAAA-TTTATTTAGGTAGA
1 TAAATTTTATTTAGGTAGA
*
26145708 TAAATCTTATTTAGGTAGA
1 TAAATTTTATTTAGGTAGA
*
26145727 TAAGTTTTATT
1 TAAATTTTATT
26145738 CATATTCTAG
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
18 4 0.15
19 22 0.85
ACGTcount: A:0.35, C:0.02, G:0.15, T:0.48
Consensus pattern (19 bp):
TAAATTTTATTTAGGTAGA
Found at i:26151705 original size:40 final size:40
Alignment explanation
Indices: 26151631--26151855 Score: 312
Period size: 40 Copynumber: 5.6 Consensus size: 40
26151621 AACCCAAGTA
* * *
26151631 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACACATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
*
26151670 CCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
* *
26151710 CCTTTGGGACTTAGCCCGGGTATAG-CAACTACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTA---GCACAAATG
* *
26151753 CCTTCGGGACTTCGTCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
26151793 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
26151833 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
26151856 CATCCGAATA
Statistics
Matches: 166, Mismatches: 13, Indels: 13
0.86 0.07 0.07
Matches are distributed among these distances:
39 13 0.08
40 117 0.70
41 1 0.01
43 34 0.20
44 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:26151754 original size:83 final size:83
Alignment explanation
Indices: 26151631--26151855 Score: 322
Period size: 83 Copynumber: 2.8 Consensus size: 83
26151621 AACCCAAGTA
* * *
26151631 CCTTCGGGATTTAG-CCGGATATAG-CA--ACTCGCACACATGCCTTCGGGTCTTAGCCCGGATA
1 CCTTCGGGACTTAGCCCGGATATAGTCACTACTCGCACAAATGCCTTCGGGACTTAGCCCGGATA
26151692 TAGTCACTAGCACAAATG
66 TAGTCACTAGCACAAATG
* * * *
26151710 CCTTTGGGACTTAGCCCGGGTATAG-CAACTACTCGCACAAATGCCTTCGGGACTTCGTCCGGAT
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTACTCGCACAAATGCCTTCGGGACTTAGCCCGGAT
26151774 ATAGTCACTAGCACAAATG
65 ATAGTCACTAGCACAAATG
26151793 CCTTCGGGACTTAGCCCGGATATAGTCACTA---GCACAAATGCCTTCGGGACTTAGCCCGGATA
1 CCTTCGGGACTTAGCCCGGATATAGTCACTACTCGCACAAATGCCTTCGGGACTTAGCCCGGATA
26151855 T
66 T
26151856 CATCCGAATA
Statistics
Matches: 130, Mismatches: 11, Indels: 9
0.87 0.07 0.06
Matches are distributed among these distances:
79 12 0.09
80 40 0.31
81 1 0.01
83 76 0.58
84 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (83 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTACTCGCACAAATGCCTTCGGGACTTAGCCCGGATA
TAGTCACTAGCACAAATG
Found at i:26161972 original size:33 final size:33
Alignment explanation
Indices: 26161930--26161992 Score: 126
Period size: 33 Copynumber: 1.9 Consensus size: 33
26161920 TAGCTCTAAC
26161930 TGAACCAAGGGCTCACTTGTCCTTACGTCCCAA
1 TGAACCAAGGGCTCACTTGTCCTTACGTCCCAA
26161963 TGAACCAAGGGCTCACTTGTCCTTACGTCC
1 TGAACCAAGGGCTCACTTGTCCTTACGTCC
26161993 GAACCGCAGA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.22, C:0.33, G:0.19, T:0.25
Consensus pattern (33 bp):
TGAACCAAGGGCTCACTTGTCCTTACGTCCCAA
Found at i:26165450 original size:49 final size:48
Alignment explanation
Indices: 26165387--26165522 Score: 152
Period size: 49 Copynumber: 2.8 Consensus size: 48
26165377 GCACATCAAA
* *
26165387 GTCGATGTCGTGTCCCTGACAAGTCTTACACTAGCTCTCATCTA-TC-AG
1 GTCGATG-CATGTCCCAGACAAGTCTTACACTAGCTCT-ATCTACTCTAG
* *
26165435 CGTCGATGCCATGTCCCAGACAGGTCTTACACTAGCT-TATATATCTCTAG
1 -GTCGATG-CATGTCCCAGACAAGTCTTACACTAGCTCTATCTA-CTCTAG
* *
26165485 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTA
1 GTCGATGCATGTCCCAGACAAGTCTTACACTAGCTCTA
26165523 ATCTCAATGC
Statistics
Matches: 76, Mismatches: 7, Indels: 8
0.84 0.08 0.09
Matches are distributed among these distances:
47 4 0.05
48 28 0.37
49 42 0.55
50 2 0.03
ACGTcount: A:0.23, C:0.29, G:0.18, T:0.29
Consensus pattern (48 bp):
GTCGATGCATGTCCCAGACAAGTCTTACACTAGCTCTATCTACTCTAG
Found at i:26165512 original size:48 final size:48
Alignment explanation
Indices: 26165438--26165608 Score: 188
Period size: 48 Copynumber: 3.6 Consensus size: 48
26165428 CTATCAGCGT
* *
26165438 CGATGCCATGTCCCAGACAGGTCTTACACTAGCTTATATATCTCTAGGC
1 CGATG-CATGTCCCAGACATGTCTTACACTAGCTTATATATCTCAAGGC
* *
26165487 CGATGCATGTCCCAGACATGTCTTACACTAGC-TCTA-ATCTCAATGC
1 CGATGCATGTCCCAGACATGTCTTACACTAGCTTATATATCTCAAGGC
* * * *
26165533 CGATGCATGTCCCA-AGCATTTCTTACA-TTGACTTACATCTCTCAAGGC
1 CGATGCATGTCCCAGA-CATGTCTTACACTAG-CTTATATATCTCAAGGC
* * *
26165581 TGATGTATGTCCCAGAGATGTCTTACAC
1 CGATGCATGTCCCAGACATGTCTTACAC
26165609 AGGCTCTCGT
Statistics
Matches: 102, Mismatches: 14, Indels: 12
0.80 0.11 0.09
Matches are distributed among these distances:
45 3 0.03
46 33 0.32
47 5 0.05
48 55 0.54
49 6 0.06
ACGTcount: A:0.25, C:0.28, G:0.17, T:0.30
Consensus pattern (48 bp):
CGATGCATGTCCCAGACATGTCTTACACTAGCTTATATATCTCAAGGC
Found at i:26165592 original size:94 final size:96
Alignment explanation
Indices: 26165345--26165608 Score: 245
Period size: 94 Copynumber: 2.8 Consensus size: 96
26165335 AGATGATGGC
* * * * * *
26165345 GCCATGTCCCAGACATGGTCTTACACTGGC-TAGCACA--TCAAAGTCGATGTCGTGTCCCTGAC
1 GCCATGTCCCAGACA-GGTCTTACACTAGCTTA-CATATCTCAAGGCCGATG-CATGTCCCAGAC
* * * *
26165407 AAGTCTTACACTAGCTCTCATCTATCAGCGTCGAT
63 ATGTCTTACACTAGCTCTAATC-ATCAACGCCGAT
* *
26165442 GCCATGTCCCAGACAGGTCTTACACTAGCTTATATATCTCTAGGCCGATGCATGTCCCAGACATG
1 GCCATGTCCCAGACAGGTCTTACACTAGCTTACATATCTCAAGGCCGATGCATGTCCCAGACATG
*
26165507 TCTTACACTAGCTCTAATC-TCAATGCCGAT
66 TCTTACACTAGCTCTAATCATCAACGCCGAT
** * * * * *
26165537 G-CATGTCCCA-AGCATTTCTTACA-TTGACTTACATCTCTCAAGGCTGATGTATGTCCCAGAGA
1 GCCATGTCCCAGA-CAGGTCTTACACTAG-CTTACATATCTCAAGGCCGATGCATGTCCCAGACA
26165599 TGTCTTACAC
64 TGTCTTACAC
26165609 AGGCTCTCGT
Statistics
Matches: 140, Mismatches: 22, Indels: 13
0.80 0.13 0.07
Matches are distributed among these distances:
93 3 0.02
94 57 0.41
95 9 0.06
96 15 0.11
97 47 0.34
98 9 0.06
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.29
Consensus pattern (96 bp):
GCCATGTCCCAGACAGGTCTTACACTAGCTTACATATCTCAAGGCCGATGCATGTCCCAGACATG
TCTTACACTAGCTCTAATCATCAACGCCGAT
Found at i:26173414 original size:48 final size:47
Alignment explanation
Indices: 26173340--26173506 Score: 153
Period size: 46 Copynumber: 3.5 Consensus size: 47
26173330 CTATCAGTGT
* * *
26173340 CGATGTCATGTCCGAGACAGGTCTTACACTAGCTTGTATATCTCGAGAC
1 CGATG-CATGTCCTAGACATGTCTTACACTAGCTTGTATATCTCAAG-C
* ** *
26173389 CGATGCATGTCCTAGACATGTCTTACACTAGC-TCT-CGTCTCAATGT
1 CGATGCATGTCCTAGACATGTCTTACACTAGCTTGTATATCTCAA-GC
* * *
26173435 CGATGCATGT-CTCAGACATGTCTTACACT-GACTTGCATCTCTCAAGG
1 CGATGCATGTCCT-AGACATGTCTTACACTAG-CTTGTATATCTCAAGC
* *
26173482 TGATGCATGTCCCAGACATGTCTTA
1 CGATGCATGTCCTAGACATGTCTTA
26173507 TGCTGGCTTT
Statistics
Matches: 98, Mismatches: 14, Indels: 14
0.78 0.11 0.11
Matches are distributed among these distances:
45 3 0.03
46 32 0.33
47 26 0.27
48 32 0.33
49 5 0.05
ACGTcount: A:0.23, C:0.26, G:0.20, T:0.31
Consensus pattern (47 bp):
CGATGCATGTCCTAGACATGTCTTACACTAGCTTGTATATCTCAAGC
Found at i:26173454 original size:46 final size:47
Alignment explanation
Indices: 26173248--26173506 Score: 183
Period size: 49 Copynumber: 5.4 Consensus size: 47
26173238 ATGCCGACGC
* * * * * *
26173248 CATGTCCCAGACAGGTCTTACACTGACTTTCATATTTCGAGGCCGATG
1 CATGT-CCAGACATGTCTTACACTGACTTGCATCTCTCAAGGTCGATG
* * * * *
26173296 TCGTGTCCCAGACAGGTCTTACATTGGCTCT-CATCTATC-AGTGTCGATG
1 -CATGT-CCAGACATGTCTTACACTGACT-TGCATCTCTCAAG-GTCGATG
* * * * **
26173345 TCATGTCCGAGACAGGTCTTACACT-AGCTTGTATATCTCGAGACCGATG
1 -CATGTCC-AGACATGTCTTACACTGA-CTTGCATCTCTCAAGGTCGATG
*
26173394 CATGTCCTAGACATGTCTTACACT-AGC-T-C-TCGTCTCAATGTCGATG
1 CATGTCC-AGACATGTCTTACACTGA-CTTGCATC-TCTCAAGGTCGATG
26173440 CATGTCTCAGACATGTCTTACACTGACTTGCATCTCTCAAGGT-GATG
1 CATGTC-CAGACATGTCTTACACTGACTTGCATCTCTCAAGGTCGATG
26173487 CATGTCCCAGACATGTCTTA
1 CATGT-CCAGACATGTCTTA
26173507 TGCTGGCTTT
Statistics
Matches: 174, Mismatches: 23, Indels: 28
0.77 0.10 0.12
Matches are distributed among these distances:
45 1 0.01
46 33 0.19
47 26 0.15
48 40 0.23
49 71 0.41
50 3 0.02
ACGTcount: A:0.22, C:0.27, G:0.20, T:0.31
Consensus pattern (47 bp):
CATGTCCAGACATGTCTTACACTGACTTGCATCTCTCAAGGTCGATG
Found at i:26173924 original size:30 final size:30
Alignment explanation
Indices: 26173888--26173944 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 30
26173878 CATTTTTTGG
* **
26173888 CAAAATGACCATTTTGTCCCTAGACTTTCA
1 CAAAATGAACATTTTACCCCTAGACTTTCA
26173918 CAAAATGAACATTTTACCCCTAGACTT
1 CAAAATGAACATTTTACCCCTAGACTT
26173945 GAAAATCGAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.33, C:0.26, G:0.09, T:0.32
Consensus pattern (30 bp):
CAAAATGAACATTTTACCCCTAGACTTTCA
Found at i:26175906 original size:27 final size:27
Alignment explanation
Indices: 26175875--26176161 Score: 349
Period size: 27 Copynumber: 10.6 Consensus size: 27
26175865 TTAGCTTACC
* *
26175875 AAATTACTAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * *
26175902 AAATTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
26175929 AAATCACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * **
26175956 AAATTACCAAAACACCCTTGGTTTACA
1 AAATTACCAAAATACCCCTGGTTTGTA
26175983 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * * **
26176010 AAATTACTAAAATACCCTTTGTTAATA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
26176037 AAATTACCAAAATACCCTTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
26176064 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* **
26176091 AAATTATCAAAATACCCCTAATTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
** *
26176118 AAATTACCAAAATACCCCTAATTTGTG
1 AAATTACCAAAATACCCCTGGTTTGTA
**
26176145 AAATTACTGAAATACCC
1 AAATTACCAAAATACCC
26176162 TCAACCTGTA
Statistics
Matches: 225, Mismatches: 35, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 225 1.00
ACGTcount: A:0.41, C:0.21, G:0.08, T:0.31
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGGTTTGTA
Found at i:26176161 original size:54 final size:54
Alignment explanation
Indices: 26175875--26176134 Score: 385
Period size: 54 Copynumber: 4.8 Consensus size: 54
26175865 TTAGCTTACC
* *
26175875 AAATTACTAAAATACCCCTAGTTTGTAAAATTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTTGGTTTATA
* * *
26175929 AAATCACCAAAATACCCCTAGTTTGTAAAATTACCAAAACACCCTTGGTTTACA
1 AAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTTGGTTTATA
* * * *
26175983 AAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTTGTTAATA
1 AAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTTGGTTTATA
* * * *
26176037 AAATTACCAAAATACCCTTGGTTTGTAAAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTTGGTTTATA
* *
26176091 AAATTATCAAAATACCCCTAATTTGTAAAATTACCAAAATACCC
1 AAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCC
26176135 CTAATTTGTG
Statistics
Matches: 184, Mismatches: 22, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
54 184 1.00
ACGTcount: A:0.41, C:0.21, G:0.07, T:0.31
Consensus pattern (54 bp):
AAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTTGGTTTATA
Done.