Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr02 99090824
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 99090824
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 317 characters in sequence are not A, C, G, or T
File 87 of 318
Found at i:26176214 original size:27 final size:28
Alignment explanation
Indices: 26175875--26176216 Score: 276
Period size: 27 Copynumber: 12.6 Consensus size: 28
26175865 TTAGCTTACC
* *
26175875 AAATTACTAAAATACCC-CTAGTTTGTA
1 AAATTACCAAAATACCCTCTAATTTGTA
* ** *
26175902 AAATTACTAAAATACCCT-TGGTTTATA
1 AAATTACCAAAATACCCTCTAATTTGTA
* *
26175929 AAATCACCAAAATACCC-CTAGTTTGTA
1 AAATTACCAAAATACCCTCTAATTTGTA
* ** **
26175956 AAATTACCAAAACACCCT-TGGTTTACA
1 AAATTACCAAAATACCCTCTAATTTGTA
**
26175983 AAATTACCAAAATACCC-CTGGTTTGTA
1 AAATTACCAAAATACCCTCTAATTTGTA
* ** **
26176010 AAATTACTAAAATACCCT-TTGTTAATA
1 AAATTACCAAAATACCCTCTAATTTGTA
**
26176037 AAATTACCAAAATACCCT-TGGTTTGTA
1 AAATTACCAAAATACCCTCTAATTTGTA
**
26176064 AAATTACCAAAATACCC-CTGGTTTGTA
1 AAATTACCAAAATACCCTCTAATTTGTA
*
26176091 AAATTATCAAAATACCC-CTAATTTGTA
1 AAATTACCAAAATACCCTCTAATTTGTA
*
26176118 AAATTACCAAAATACCC-CTAATTTGTG
1 AAATTACCAAAATACCCTCTAATTTGTA
** **
26176145 AAATTACTGAAATACCCTC-AACCTGTA
1 AAATTACCAAAATACCCTCTAATTTGTA
*** * *
26176172 AAATTATTGAAATACCCTC-GACTTGTA
1 AAATTACCAAAATACCCTCTAATTTGTA
*
26176199 AAATTACCAAAGTACCCT
1 AAATTACCAAAATACCCT
26176217 TGATTTATAG
Statistics
Matches: 269, Mismatches: 39, Indels: 14
0.84 0.12 0.04
Matches are distributed among these distances:
27 268 1.00
28 1 0.00
ACGTcount: A:0.40, C:0.21, G:0.08, T:0.31
Consensus pattern (28 bp):
AAATTACCAAAATACCCTCTAATTTGTA
Found at i:26176230 original size:27 final size:26
Alignment explanation
Indices: 26176198--26176272 Score: 69
Period size: 27 Copynumber: 2.8 Consensus size: 26
26176188 CTCGACTTGT
*
26176198 AAAATTACCAAAGTACCCTTGATTTAT
1 AAAATTACCAAA-TACCCTTGATTTAC
* ****
26176225 AGAATTACTGTTTTACCCTTGATTTAC
1 AAAATTAC-CAAATACCCTTGATTTAC
26176252 AAAATTACCGAAATACCCTTG
1 AAAATTACC-AAATACCCTTG
26176273 TACGGTAGAA
Statistics
Matches: 35, Mismatches: 11, Indels: 4
0.70 0.22 0.08
Matches are distributed among these distances:
27 35 1.00
ACGTcount: A:0.36, C:0.20, G:0.09, T:0.35
Consensus pattern (26 bp):
AAAATTACCAAATACCCTTGATTTAC
Found at i:26176289 original size:27 final size:27
Alignment explanation
Indices: 26176257--26176524 Score: 295
Period size: 27 Copynumber: 9.6 Consensus size: 27
26176247 TTTACAAAAT
*
26176257 TACCGAAATACCCTTGTACGGTAGAAA
1 TACCGAAATACCCTTGTAGGGTAGAAA
*
26176284 TGCCGAAATACCCTTGTAGGGTAGAAA
1 TACCGAAATACCCTTGTAGGGTAGAAA
*
26176311 TACCGAAATACCCCTGTAGGGTAGAAATACCAAAA
1 TACCGAAATACCCTTGTAGGGTAG--------AAA
* *
26176346 TACCAAAATACCCCTGTAGGGTAGAAA
1 TACCGAAATACCCTTGTAGGGTAGAAA
* *
26176373 TACCGAAATACCCCTGTAGGGTAGAAT
1 TACCGAAATACCCTTGTAGGGTAGAAA
** *
26176400 TACTAAAATACCCTTGTAGGGTAGAAT
1 TACCGAAATACCCTTGTAGGGTAGAAA
26176427 TACCGAAATACCCTTGTAGGGTAGAAA
1 TACCGAAATACCCTTGTAGGGTAGAAA
* *
26176454 TACCGAAATACCCCTGTAGGGTAGAAT
1 TACCGAAATACCCTTGTAGGGTAGAAA
* * *
26176481 TACTGAAATACTCC-TGTAAGGTAGAAT
1 TACCGAAATAC-CCTTGTAGGGTAGAAA
* *
26176508 TACCGAGATACCATTGT
1 TACCGAAATACCCTTGT
26176525 GGAGTAAAAT
Statistics
Matches: 211, Mismatches: 20, Indels: 20
0.84 0.08 0.08
Matches are distributed among these distances:
26 1 0.00
27 182 0.86
28 2 0.01
35 26 0.12
ACGTcount: A:0.37, C:0.20, G:0.20, T:0.23
Consensus pattern (27 bp):
TACCGAAATACCCTTGTAGGGTAGAAA
Found at i:26176347 original size:35 final size:35
Alignment explanation
Indices: 26176308--26176384 Score: 136
Period size: 35 Copynumber: 2.2 Consensus size: 35
26176298 TGTAGGGTAG
*
26176308 AAATACCGAAATACCCCTGTAGGGTAGAAATACCA
1 AAATACCAAAATACCCCTGTAGGGTAGAAATACCA
*
26176343 AAATACCAAAATACCCCTGTAGGGTAGAAATACCG
1 AAATACCAAAATACCCCTGTAGGGTAGAAATACCA
26176378 AAATACC
1 AAATACC
26176385 CCTGTAGGGT
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
35 40 1.00
ACGTcount: A:0.44, C:0.23, G:0.16, T:0.17
Consensus pattern (35 bp):
AAATACCAAAATACCCCTGTAGGGTAGAAATACCA
Found at i:26176386 original size:62 final size:61
Alignment explanation
Indices: 26176289--26176465 Score: 251
Period size: 62 Copynumber: 3.0 Consensus size: 61
26176279 AGAAATGCCG
26176289 AAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTGTAGGGTAGAAATACCAAAATACCA
1 AAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTGTAGGGTAGAAATACC-AAATACCA
* *
26176351 AAATACCCCTGTAGGGTAGAAATACCGAAATACCCCTGTAGGGTAG-AAT------TACTA
1 AAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTGTAGGGTAGAAATACCAAATACCA
* *
26176405 AAATACCCTTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAAATACCGAAATACC
1 AAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTGTAGGGTAGAAATACC-AAATACC
26176466 CCTGTAGGGT
Statistics
Matches: 101, Mismatches: 6, Indels: 16
0.82 0.05 0.13
Matches are distributed among these distances:
54 47 0.47
55 3 0.03
61 3 0.03
62 48 0.48
ACGTcount: A:0.39, C:0.20, G:0.19, T:0.21
Consensus pattern (61 bp):
AAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTGTAGGGTAGAAATACCAAATACCA
Found at i:26176933 original size:27 final size:26
Alignment explanation
Indices: 26176881--26176940 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
26176871 ATATATATAT
*
26176881 ATATCTGTTCTGGTGGCCTAGCCACA
1 ATATCTGTTCTGGTGACCTAGCCACA
* * *
26176907 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGT-TCTGGTGACCTAGCCACA
26176934 ATATCTG
1 ATATCTG
26176941 GCAGCCTCGC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.35
Consensus pattern (26 bp):
ATATCTGTTCTGGTGACCTAGCCACA
Found at i:26177094 original size:31 final size:31
Alignment explanation
Indices: 26177059--26177168 Score: 112
Period size: 31 Copynumber: 3.4 Consensus size: 31
26177049 TTGCATTCAT
* * *
26177059 ATTCTGATTTTGATTCTGTTACCTGATACTA
1 ATTCTGATTCTGATTCTGTCACCTAATACTA
* *
26177090 ATTCTGATTCTAATTCTGTCACCTAATTCTGATTCTG
1 ATTCTGATTCTGATTCTGTCACCTAA---T-A--CTA
*
26177127 ATTCTGATTCTGATTCTGTCACCTAATTCTA
1 ATTCTGATTCTGATTCTGTCACCTAATACTA
26177158 ATTCTGATTCT
1 ATTCTGATTCT
26177169 CATTTTGATT
Statistics
Matches: 65, Mismatches: 8, Indels: 12
0.76 0.09 0.14
Matches are distributed among these distances:
31 35 0.54
34 2 0.03
35 1 0.02
37 27 0.42
ACGTcount: A:0.22, C:0.20, G:0.11, T:0.47
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTGTCACCTAATACTA
Found at i:26177122 original size:37 final size:37
Alignment explanation
Indices: 26177081--26177156 Score: 125
Period size: 37 Copynumber: 2.1 Consensus size: 37
26177071 ATTCTGTTAC
26177081 CTGATACTAATTCTGATTCTAATTCTGTCACCTAATT
1 CTGATACTAATTCTGATTCTAATTCTGTCACCTAATT
* * *
26177118 CTGATTCTGATTCTGATTCTGATTCTGTCACCTAATT
1 CTGATACTAATTCTGATTCTAATTCTGTCACCTAATT
26177155 CT
1 CT
26177157 AATTCTGATT
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.22, C:0.22, G:0.11, T:0.45
Consensus pattern (37 bp):
CTGATACTAATTCTGATTCTAATTCTGTCACCTAATT
Found at i:26177124 original size:6 final size:6
Alignment explanation
Indices: 26177059--26177180 Score: 70
Period size: 6 Copynumber: 19.8 Consensus size: 6
26177049 TTGCATTCAT
* * * *
26177059 ATTCTG ATTTTG ATTCTG -TTACCTG ATACTA ATTCTG ATTCTA ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* * * * *
26177108 -TCACCTA ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG -TCACCTA ATTCTA
1 AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG
* *
26177158 ATTCTG ATTCTC ATTTTG ATTCT
1 ATTCTG ATTCTG ATTCTG ATTCT
26177181 AGTTTTGATA
Statistics
Matches: 87, Mismatches: 20, Indels: 18
0.70 0.16 0.14
Matches are distributed among these distances:
5 4 0.05
6 73 0.84
7 7 0.08
8 3 0.03
ACGTcount: A:0.21, C:0.20, G:0.11, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:26177162 original size:37 final size:37
Alignment explanation
Indices: 26177090--26177180 Score: 146
Period size: 37 Copynumber: 2.5 Consensus size: 37
26177080 CCTGATACTA
* *
26177090 ATTCTGATTCTAATTCTGTCACCTAATTCTGATTCTG
1 ATTCTGATTCTGATTCTGTCACCTAATTCTAATTCTG
26177127 ATTCTGATTCTGATTCTGTCACCTAATTCTAATTCTG
1 ATTCTGATTCTGATTCTGTCACCTAATTCTAATTCTG
* *
26177164 ATTCTCATTTTGATTCT
1 ATTCTGATTCTGATTCT
26177181 AGTTTTGATA
Statistics
Matches: 50, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 50 1.00
ACGTcount: A:0.21, C:0.21, G:0.10, T:0.48
Consensus pattern (37 bp):
ATTCTGATTCTGATTCTGTCACCTAATTCTAATTCTG
Found at i:26183201 original size:49 final size:49
Alignment explanation
Indices: 26183147--26183244 Score: 196
Period size: 49 Copynumber: 2.0 Consensus size: 49
26183137 CTAGAGGTAG
26183147 AGCTAAACAACATGCTATAGGCTCAATTCAGTCAAGAATTTCATATGGC
1 AGCTAAACAACATGCTATAGGCTCAATTCAGTCAAGAATTTCATATGGC
26183196 AGCTAAACAACATGCTATAGGCTCAATTCAGTCAAGAATTTCATATGGC
1 AGCTAAACAACATGCTATAGGCTCAATTCAGTCAAGAATTTCATATGGC
26183245 CTAATAAACC
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
49 49 1.00
ACGTcount: A:0.37, C:0.20, G:0.16, T:0.27
Consensus pattern (49 bp):
AGCTAAACAACATGCTATAGGCTCAATTCAGTCAAGAATTTCATATGGC
Found at i:26185744 original size:18 final size:18
Alignment explanation
Indices: 26185729--26185768 Score: 64
Period size: 18 Copynumber: 2.2 Consensus size: 18
26185719 TATTAATAGT
26185729 ATAAAATAAATAAATAAA
1 ATAAAATAAATAAATAAA
26185747 ATAAAATAAATAAGA-AAA
1 ATAAAATAAATAA-ATAAA
26185765 ATAA
1 ATAA
26185769 GCAAATGATT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
18 20 0.95
19 1 0.05
ACGTcount: A:0.78, C:0.00, G:0.03, T:0.20
Consensus pattern (18 bp):
ATAAAATAAATAAATAAA
Found at i:26185747 original size:13 final size:13
Alignment explanation
Indices: 26185729--26185768 Score: 55
Period size: 13 Copynumber: 3.0 Consensus size: 13
26185719 TATTAATAGT
26185729 ATAAAATAAATAA
1 ATAAAATAAATAA
26185742 ATAAAATAAAATAA
1 ATAAAAT-AAATAA
26185756 ATAAGAA-AAATAA
1 ATAA-AATAAATAA
26185769 GCAAATGATT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
13 13 0.52
14 10 0.40
15 2 0.08
ACGTcount: A:0.78, C:0.00, G:0.03, T:0.20
Consensus pattern (13 bp):
ATAAAATAAATAA
Found at i:26186351 original size:33 final size:34
Alignment explanation
Indices: 26186314--26186381 Score: 129
Period size: 34 Copynumber: 2.0 Consensus size: 34
26186304 AAAATAAAAG
26186314 AGTTATGAAAAGCCG-AAAAAAAAACCTAACCTT
1 AGTTATGAAAAGCCGAAAAAAAAAACCTAACCTT
26186347 AGTTATGAAAAGCCGAAAAAAAAAACCTAACCTT
1 AGTTATGAAAAGCCGAAAAAAAAAACCTAACCTT
26186381 A
1 A
26186382 CTTCTAAACT
Statistics
Matches: 34, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
33 15 0.44
34 19 0.56
ACGTcount: A:0.53, C:0.18, G:0.12, T:0.18
Consensus pattern (34 bp):
AGTTATGAAAAGCCGAAAAAAAAAACCTAACCTT
Found at i:26190499 original size:37 final size:38
Alignment explanation
Indices: 26190428--26190838 Score: 198
Period size: 37 Copynumber: 11.0 Consensus size: 38
26190418 ATAATCTGTG
* * *
26190428 GATATTGCTCGTTTGAGCATGCATTCTGTATAATTAGTA
1 GATATCGCTCGTTTGAGCA-CCATTCAGTATAATTAGTA
* *
26190467 TATATCGCTCGTTTGAGC-CCATTCAGTATAATTAGTG
1 GATATCGCTCGTTTGAGCACCATTCAGTATAATTAGTA
* * * * * *
26190504 GATATCGCTCGTTTGAGAAACTTTCAATATAATCAATA
1 GATATCGCTCGTTTGAGCACCATTCAGTATAATTAGTA
* ** * * *
26190542 GACATTTCTCTTTTGAGCA-CGTTTAGTAT-ATTCAGTA
1 GATATCGCTCGTTTGAGCACCATTCAGTATAATT-AGTA
* * * * *
26190579 GATATTGCTCATTTGAGC-CCATTCAATATAATCAGTG
1 GATATCGCTCGTTTGAGCACCATTCAGTATAATTAGTA
* * * * *
26190616 GATATTGCTCATTTGAGCAACTTTCAGTATAATCAGTA
1 GATATCGCTCGTTTGAGCACCATTCAGTATAATTAGTA
* * ** *
26190654 GACATTGCTC-TTTTTGCA-CATTAAGTAGT--TTCAGTA
1 GATATCGCTCGTTTGAGCACCATTCAGTA-TAATT-AGTA
* * * * * * *
26190690 TATATTGCTCATTTAAGCA-CATTCAATATAATCAATA
1 GATATCGCTCGTTTGAGCACCATTCAGTATAATTAGTA
* * * * * *
26190727 GACATTGCTTGTTTGA--ACTCATTCAGTATAATCAATG
1 GATATCGCTCGTTTGAGCAC-CATTCAGTATAATTAGTA
* * * *
26190764 GATATCACTCGTTTGAGCAACTTTCAGTATAATCAGTA
1 GATATCGCTCGTTTGAGCACCATTCAGTATAATTAGTA
* * * * * *
26190802 GACATTGCTCTTTTGAGCA-CGTTCAATATATTTAGTA
1 GATATCGCTCGTTTGAGCACCATTCAGTATAATTAGTA
26190839 TTCATTTTTT
Statistics
Matches: 286, Mismatches: 72, Indels: 30
0.74 0.19 0.08
Matches are distributed among these distances:
35 2 0.01
36 22 0.08
37 161 0.56
38 84 0.29
39 17 0.06
ACGTcount: A:0.30, C:0.17, G:0.16, T:0.38
Consensus pattern (38 bp):
GATATCGCTCGTTTGAGCACCATTCAGTATAATTAGTA
Found at i:26190617 original size:112 final size:111
Alignment explanation
Indices: 26190455--26190831 Score: 375
Period size: 112 Copynumber: 3.4 Consensus size: 111
26190445 CATGCATTCT
* * * * * * *
26190455 GTATAATT-AGTATATATCGCTCGTTTGAGCCCATTCAGTATAATTAGTGGATATCGCTCGTTTG
1 GTAT-ATTCAGTAGATATTGCTCATTTGAGCACATTCAATATAATCAGTGGATATTGCTCGTTTG
* *
26190519 AGAAACTTTCAATATAATCAATAGACATTTCTCTTTTGAGCACGTTTA
65 AGAAACTTTCAGTATAATCAATAGACATTACTCTTTTGAGCAC-TTTA
* *
26190567 GTATATTCAGTAGATATTGCTCATTTGAGCCCATTCAATATAATCAGTGGATATTGCTCATTTGA
1 GTATATTCAGTAGATATTGCTCATTTGAGCACATTCAATATAATCAGTGGATATTGCTCGTTTGA
* * * * *
26190632 GCAACTTTCAGTATAATCAGTAGACATTGCTCTTTT-TGCACATTAA
66 GAAACTTTCAGTATAATCAATAGACATTACTCTTTTGAGCAC-TTTA
* * * * * *
26190678 GTAGT-TTCAGTATATATTGCTCATTTAAGCACATTCAATATAATCAATAGACATTGCTTGTTTG
1 GTA-TATTCAGTAGATATTGCTCATTTGAGCACATTCAATATAATCAGTGGATATTGCTCGTTTG
** * * * * *
26190742 A-ACTCATTCAGTATAATCAATGGATATCACTCGTTTGAGCAACTTTCA
65 AGAAACTTTCAGTATAATCAATAGACATTACTCTTTTGAGC-ACTTT-A
* * * *
26190790 GTATAATCAGTAGACATTGCTCTTTTGAGCACGTTCAATATA
1 GTATATTCAGTAGATATTGCTCATTTGAGCACATTCAATATA
26190832 TTTAGTATTC
Statistics
Matches: 219, Mismatches: 40, Indels: 12
0.81 0.15 0.04
Matches are distributed among these distances:
110 25 0.11
111 70 0.32
112 124 0.57
ACGTcount: A:0.31, C:0.17, G:0.15, T:0.38
Consensus pattern (111 bp):
GTATATTCAGTAGATATTGCTCATTTGAGCACATTCAATATAATCAGTGGATATTGCTCGTTTGA
GAAACTTTCAGTATAATCAATAGACATTACTCTTTTGAGCACTTTA
Found at i:26190634 original size:74 final size:74
Alignment explanation
Indices: 26190488--26190831 Score: 293
Period size: 74 Copynumber: 4.6 Consensus size: 74
26190478 TTTGAGCCCA
* * * * * * * * *
26190488 TTCAGTATAATTAGTGGATATCGCTCGTTTGAGAAACTTTCAATATAATCAATAGACATTTCTCT
1 TTCAGTATAATCAGTAGACATTGCTC-TTTGAG-CACATTCAATATAATCAATAGATATTGCTCA
26190553 TTTGAGC-ACGT
64 TTTGAGCAAC-T
* * * * *
26190564 TT-AGTATATTCAGTAGATATTGCTCATTTGAGCCCATTCAATATAATCAGTGGATATTGCTCAT
1 TTCAGTATAATCAGTAGACATTGCTC-TTTGAGCACATTCAATATAATCAATAGATATTGCTCAT
26190628 TTGAGCAACT
65 TTGAGCAACT
** * * *
26190638 TTCAGTATAATCAGTAGACATTGCTCTTTTTGCACATT-AAGTAGT-TTCAGTATATATTGCTCA
1 TTCAGTATAATCAGTAGACATTGCTCTTTGAGCACATTCAA-TA-TAATCAATAGATATTGCTCA
* *
26190701 TTTAAGC-ACA
64 TTTGAGCAACT
* * * * * * * ** *
26190711 TTCAATATAATCAATAGACATTGCTTGTTTGAACTCATTCAGTATAATCAATGGATATCACTCGT
1 TTCAGTATAATCAGTAGACATTGC-TCTTTGAGCACATTCAATATAATCAATAGATATTGCTCAT
26190776 TTGAGCAACT
65 TTGAGCAACT
*
26190786 TTCAGTATAATCAGTAGACATTGCTCTTTTGAGCACGTTCAATATA
1 TTCAGTATAATCAGTAGACATTGCTC-TTTGAGCACATTCAATATA
26190832 TTTAGTATTC
Statistics
Matches: 212, Mismatches: 47, Indels: 19
0.76 0.17 0.07
Matches are distributed among these distances:
73 27 0.13
74 94 0.44
75 89 0.42
76 2 0.01
ACGTcount: A:0.31, C:0.17, G:0.15, T:0.38
Consensus pattern (74 bp):
TTCAGTATAATCAGTAGACATTGCTCTTTGAGCACATTCAATATAATCAATAGATATTGCTCATT
TGAGCAACT
Found at i:26199789 original size:40 final size:40
Alignment explanation
Indices: 26199734--26199910 Score: 261
Period size: 40 Copynumber: 4.5 Consensus size: 40
26199724 CGGATGATAA
*
26199734 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
26199774 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
26199813 TCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
26199853 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
**
26199893 CC-GGCTAAACCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
26199911 TACTTGGTTG
Statistics
Matches: 126, Mismatches: 9, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
39 53 0.42
40 73 0.58
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:26199866 original size:79 final size:79
Alignment explanation
Indices: 26199735--26199910 Score: 264
Period size: 79 Copynumber: 2.2 Consensus size: 79
26199725 GGATGATAAC
* ** *
26199735 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTTCCGGGCTAAGTCCCGAAGGCATTTGT
1 CGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTGA
*
26199800 GCGAGTTA-CTATTT
66 GCGAG-TAGCTATAT
26199814 CGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTGA
1 CGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTGA
26199879 GCGAGTAGCTATAT
66 GCGAGTAGCTATAT
* **
26199893 CCGGCTAAACCCCGAAGG
1 CGGGCTAAGTCCCGAAGG
26199911 TACTTGGTTG
Statistics
Matches: 88, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
78 2 0.02
79 86 0.98
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.24
Consensus pattern (79 bp):
CGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTGA
GCGAGTAGCTATAT
Found at i:26209403 original size:40 final size:40
Alignment explanation
Indices: 26209348--26209557 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
26209338 AACATTGGAA
26209348 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
26209388 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
26209428 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
26209468 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
26209507 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
26209548 CTATATCCGG
1 ATATATCCGG
26209558 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:26217533 original size:40 final size:40
Alignment explanation
Indices: 26217478--26217687 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
26217468 AACATTGGAA
26217478 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
26217518 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
26217558 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
26217598 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
26217637 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
26217678 CTATATCCGG
1 ATATATCCGG
26217688 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:26219410 original size:40 final size:40
Alignment explanation
Indices: 26219353--26219504 Score: 259
Period size: 40 Copynumber: 3.8 Consensus size: 40
26219343 CGGATGATAA
26219353 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
*
26219393 CTGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
* **
26219433 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
*
26219473 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
26219505 AGCTATATCC
Statistics
Matches: 105, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 105 1.00
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
Found at i:26222790 original size:27 final size:27
Alignment explanation
Indices: 26222760--26223022 Score: 215
Period size: 27 Copynumber: 9.7 Consensus size: 27
26222750 TTAGTTTATC
*
26222760 AAATTACCAAAATACCCTTGGTTTGTA
1 AAATTACCAAAATACCCTTGATTTGTA
* *
26222787 AAATTACTAAAATACCCTTTG-TTTATA
1 AAATTACCAAAATACCC-TTGATTTGTA
* *
26222814 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCTTGATTTGTA
*
26222841 AAATTACCAAAATACCCCT-AGTTTGTA
1 AAATTACCAAAATACCCTTGA-TTTGTA
* * *
26222868 AAATTATCAAAATACCCCTGATTTGTG
1 AAATTACCAAAATACCCTTGATTTGTA
** * **
26222895 AAATTACTGAAATACCCTCGACCTGTA
1 AAATTACCAAAATACCCTTGATTTGTA
*** ** *
26222922 AAATTATTGAAATACCCTCAACTTGTA
1 AAATTACCAAAATACCCTTGATTTGTA
* * *
26222949 AAATTACCAAAGTACCCCTGATTTATA
1 AAATTACCAAAATACCCTTGATTTGTA
* **** * *
26222976 GAATTACCGTTTTACCCTCGATTTATA
1 AAATTACCAAAATACCCTTGATTTGTA
*
26223003 AAATTACCGAAATACCCTTG
1 AAATTACCAAAATACCCTTG
26223023 TAGGGTAGAA
Statistics
Matches: 192, Mismatches: 40, Indels: 8
0.80 0.17 0.03
Matches are distributed among these distances:
26 2 0.01
27 186 0.97
28 4 0.02
ACGTcount: A:0.38, C:0.21, G:0.09, T:0.32
Consensus pattern (27 bp):
AAATTACCAAAATACCCTTGATTTGTA
Found at i:26223037 original size:27 final size:27
Alignment explanation
Indices: 26223004--26223334 Score: 466
Period size: 27 Copynumber: 12.3 Consensus size: 27
26222994 CGATTTATAA
*
26223004 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
26223031 AAATACCGAAATACCCTTGTAGGATAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
26223058 AAATACCGAAATACACCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
26223085 AATTACTGGAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
26223112 AATTATCAAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
26223139 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
26223166 AAATACCGAAATACACCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
26223193 AATTATCGGAATACTCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
26223220 AATTATCAAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
26223247 AATTATCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
26223274 AATTACCGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
26223301 AATTACCGAAATA-CCCTCGTAGGGTAG
1 AATTACCGAAATACCCCT-GTAGGGTAG
26223328 AATTACC
1 AATTACC
26223335 ATTTTGCTCC
Statistics
Matches: 273, Mismatches: 30, Indels: 2
0.90 0.10 0.01
Matches are distributed among these distances:
26 4 0.01
27 269 0.99
ACGTcount: A:0.36, C:0.19, G:0.21, T:0.24
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:26223813 original size:22 final size:22
Alignment explanation
Indices: 26223761--26223825 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
26223751 TTAAAGCCTT
* *
26223761 CTGATTATGGCTTTGTGTCAAC
1 CTGATTATGGCTCTGTGCCAAC
*
26223783 CT-ACATATGGCTCTGTGCCAAC
1 CTGA-TTATGGCTCTGTGCCAAC
*
26223805 CTGATTATGGCTGTGTGCCAA
1 CTGATTATGGCTCTGTGCCAA
26223826 ACGTATTTGC
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
21 1 0.03
22 34 0.94
23 1 0.03
ACGTcount: A:0.20, C:0.23, G:0.23, T:0.34
Consensus pattern (22 bp):
CTGATTATGGCTCTGTGCCAAC
Found at i:26224014 original size:27 final size:27
Alignment explanation
Indices: 26223984--26224085 Score: 134
Period size: 27 Copynumber: 3.8 Consensus size: 27
26223974 ATTCTGTTAA
* *
26223984 GTGGCTTTGCCACATTATCTGTTTCTG
1 GTGGCTCTGCCACAATATCTGTTTCTG
* *
26224011 GTGGCTATGCCACAAATATCT-ATTCTG
1 GTGGCTCTGCCAC-AATATCTGTTTCTG
*
26224038 GTGGCTCTGCCACAATATCTGTATCTG
1 GTGGCTCTGCCACAATATCTGTTTCTG
*
26224065 GTGGCTCTGTCACAATATCTG
1 GTGGCTCTGCCACAATATCTG
26224086 ATAACTGAGC
Statistics
Matches: 66, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
26 7 0.11
27 53 0.80
28 6 0.09
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.36
Consensus pattern (27 bp):
GTGGCTCTGCCACAATATCTGTTTCTG
Found at i:26224260 original size:6 final size:6
Alignment explanation
Indices: 26224245--26224341 Score: 65
Period size: 6 Copynumber: 15.8 Consensus size: 6
26224235 ATTCTGTTAC
* * * *
26224245 CTGATA CTGATT CTGATT TTGATT TTG-TT ACCTGATA CTGATT CTGATT
1 CTGATT CTGATT CTGATT CTGATT CTGATT --CTGATT CTGATT CTGATT
* * *
26224294 CTGATT CTG-TCAC CTAATC CTGATT CTGATT CTGATT CT-AGTT CTGAT
1 CTGATT CTGAT--T CTGATT CTGATT CTGATT CTGATT CTGA-TT CTGAT
26224342 AATGTTTCTT
Statistics
Matches: 74, Mismatches: 9, Indels: 16
0.75 0.09 0.16
Matches are distributed among these distances:
5 4 0.05
6 63 0.85
7 5 0.07
8 2 0.03
ACGTcount: A:0.20, C:0.19, G:0.15, T:0.46
Consensus pattern (6 bp):
CTGATT
Found at i:26224316 original size:37 final size:31
Alignment explanation
Indices: 26224235--26224332 Score: 151
Period size: 31 Copynumber: 3.2 Consensus size: 31
26224225 CTGATTTTTT
*
26224235 ATTCTGTTACCTGATACTGATTCTGATTTTG
1 ATTCTGTTACCTGATACTGATTCTGATTCTG
*
26224266 ATTTTGTTACCTGATACTGATTCTGATTCTG
1 ATTCTGTTACCTGATACTGATTCTGATTCTG
* * *
26224297 ATTCTGTCACCTAATCCTGATTCTGATTCTG
1 ATTCTGTTACCTGATACTGATTCTGATTCTG
26224328 ATTCT
1 ATTCT
26224333 AGTTCTGATA
Statistics
Matches: 61, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 61 1.00
ACGTcount: A:0.19, C:0.19, G:0.14, T:0.47
Consensus pattern (31 bp):
ATTCTGTTACCTGATACTGATTCTGATTCTG
Found at i:26227717 original size:21 final size:21
Alignment explanation
Indices: 26227691--26227744 Score: 108
Period size: 21 Copynumber: 2.6 Consensus size: 21
26227681 AGCAAAGGTC
26227691 ACACGCCCGTGTGGATATGGG
1 ACACGCCCGTGTGGATATGGG
26227712 ACACGCCCGTGTGGATATGGG
1 ACACGCCCGTGTGGATATGGG
26227733 ACACGCCCGTGT
1 ACACGCCCGTGT
26227745 AGGAAGGCCG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.19, C:0.28, G:0.35, T:0.19
Consensus pattern (21 bp):
ACACGCCCGTGTGGATATGGG
Found at i:26229398 original size:44 final size:42
Alignment explanation
Indices: 26229326--26229475 Score: 137
Period size: 42 Copynumber: 3.5 Consensus size: 42
26229316 ATGTGCTTTA
** *
26229326 GTGTAAGACCACATCTGAGAC-GTTGGCATCG-ACTTGTGATATAC
1 GTGTAAGACCATGTCTGGGACAG-TGGCATCGTA-TT-TGAT-TAC
* *
26229370 GTGTAAGACCATGTTTGGGACA-TCGGCATCGTATTTGATTTC
1 GTGTAAGACCATGTCTGGGACAGT-GGCATCGTATTTGATTAC
* *
26229412 GTGTAAGACCCTGTCTGGGACAGTGGCATCAATATTTGATTAC
1 GTGTAAGACCATGTCTGGGACAGTGGCATC-GTATTTGATTAC
* *
26229455 AT-TAAGACCATGTCTGAGACA
1 GTGTAAGACCATGTCTGGGACA
26229476 TTGACATTGT
Statistics
Matches: 89, Mismatches: 12, Indels: 12
0.79 0.11 0.11
Matches are distributed among these distances:
42 45 0.51
43 17 0.19
44 26 0.29
45 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.30
Consensus pattern (42 bp):
GTGTAAGACCATGTCTGGGACAGTGGCATCGTATTTGATTAC
Found at i:26231291 original size:40 final size:40
Alignment explanation
Indices: 26231236--26231489 Score: 363
Period size: 40 Copynumber: 6.4 Consensus size: 40
26231226 ATGATAACCA
* * *
26231236 GGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-TCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TATCCG
26231276 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG
* *
26231316 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG
*
26231356 GGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG
*
26231396 GGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG
* *
26231436 GGCTATGTCCCGAAGGCA-TTGAGCGAG-TAGCTATATCC-
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCCG
* *
26231474 GGTTAAATCCCGAAGG
1 GGCTAAGTCCCGAAGG
26231490 TACTTGGCTT
Statistics
Matches: 196, Mismatches: 16, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
38 15 0.08
39 16 0.08
40 165 0.84
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.25
Consensus pattern (40 bp):
GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG
Found at i:26236441 original size:41 final size:41
Alignment explanation
Indices: 26236384--26236527 Score: 170
Period size: 40 Copynumber: 3.6 Consensus size: 41
26236374 CGAGCTTGGG
26236384 TTCGAAGGGCTTTTGAGCCAGTGCTAATAACCGAACTTAGT
1 TTCGAAGGGCTTTTGAGCCAGTGCTAATAACCGAACTTAGT
* *
26236425 TTCGAAGGGCTTTTGAGCCAGTG-TCATAACCGGACTTAGT
1 TTCGAAGGGCTTTTGAGCCAGTGCTAATAACCGAACTTAGT
* * * * *
26236465 TCCGAAGGGCCTTCGAGCCAGTGGCCTAAT--CCGAGCTTGGT
1 TTCGAAGGGCTTTTGAGCCAGT-G-CTAATAACCGAACTTAGT
*
26236506 CTCGAAGGGC-TTTGAGCCAGTG
1 TTCGAAGGGCTTTTGAGCCAGTG
26236528 TTAAGAATCG
Statistics
Matches: 88, Mismatches: 12, Indels: 8
0.81 0.11 0.07
Matches are distributed among these distances:
39 1 0.01
40 44 0.50
41 40 0.45
43 3 0.03
ACGTcount: A:0.22, C:0.23, G:0.29, T:0.26
Consensus pattern (41 bp):
TTCGAAGGGCTTTTGAGCCAGTGCTAATAACCGAACTTAGT
Found at i:26244882 original size:41 final size:41
Alignment explanation
Indices: 26244825--26244968 Score: 170
Period size: 40 Copynumber: 3.6 Consensus size: 41
26244815 CGAGCTTGGG
26244825 TTCGAAGGGCTTTTGAGCCAGTGCTAATAACCGAACTTAGT
1 TTCGAAGGGCTTTTGAGCCAGTGCTAATAACCGAACTTAGT
* *
26244866 TTCGAAGGGCTTTTGAGCCAGTG-TCATAACCGGACTTAGT
1 TTCGAAGGGCTTTTGAGCCAGTGCTAATAACCGAACTTAGT
* * * * *
26244906 TCCGAAGGGCCTTCGAGCCAGTGGCCTAAT--CCGAGCTTGGT
1 TTCGAAGGGCTTTTGAGCCAGT-G-CTAATAACCGAACTTAGT
*
26244947 CTCGAAGGGC-TTTGAGCCAGTG
1 TTCGAAGGGCTTTTGAGCCAGTG
26244969 TTAAGAATCG
Statistics
Matches: 88, Mismatches: 12, Indels: 8
0.81 0.11 0.07
Matches are distributed among these distances:
39 1 0.01
40 44 0.50
41 40 0.45
43 3 0.03
ACGTcount: A:0.22, C:0.23, G:0.29, T:0.26
Consensus pattern (41 bp):
TTCGAAGGGCTTTTGAGCCAGTGCTAATAACCGAACTTAGT
Found at i:26253287 original size:41 final size:41
Alignment explanation
Indices: 26253230--26253373 Score: 170
Period size: 40 Copynumber: 3.6 Consensus size: 41
26253220 CGAGCTTGGG
26253230 TTCGAAGGGCTTTTGAGCCAGTGCTAATAACCGAACTTAGT
1 TTCGAAGGGCTTTTGAGCCAGTGCTAATAACCGAACTTAGT
* *
26253271 TTCGAAGGGCTTTTGAGCCAGTG-TCATAACCGGACTTAGT
1 TTCGAAGGGCTTTTGAGCCAGTGCTAATAACCGAACTTAGT
* * * * *
26253311 TCCGAAGGGCCTTCGAGCCAGTGGCCTAAT--CCGAGCTTGGT
1 TTCGAAGGGCTTTTGAGCCAGT-G-CTAATAACCGAACTTAGT
*
26253352 CTCGAAGGGC-TTTGAGCCAGTG
1 TTCGAAGGGCTTTTGAGCCAGTG
26253374 TTAAGAATCG
Statistics
Matches: 88, Mismatches: 12, Indels: 8
0.81 0.11 0.07
Matches are distributed among these distances:
39 1 0.01
40 44 0.50
41 40 0.45
43 3 0.03
ACGTcount: A:0.22, C:0.23, G:0.29, T:0.26
Consensus pattern (41 bp):
TTCGAAGGGCTTTTGAGCCAGTGCTAATAACCGAACTTAGT
Found at i:26256465 original size:10 final size:10
Alignment explanation
Indices: 26256434--26256475 Score: 52
Period size: 10 Copynumber: 4.4 Consensus size: 10
26256424 ATTACCGGTA
26256434 CTTTCACTCT
1 CTTTCACTCT
* *
26256444 CTTTGA-T-A
1 CTTTCACTCT
26256452 CTTTCACTCT
1 CTTTCACTCT
26256462 CTTTCACTCT
1 CTTTCACTCT
26256472 CTTT
1 CTTT
26256476 GAGTATAACA
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
8 5 0.19
9 2 0.08
10 19 0.73
ACGTcount: A:0.12, C:0.33, G:0.02, T:0.52
Consensus pattern (10 bp):
CTTTCACTCT
Found at i:26261187 original size:93 final size:93
Alignment explanation
Indices: 26261028--26261251 Score: 378
Period size: 93 Copynumber: 2.4 Consensus size: 93
26261018 TTAGGTTTGA
* *
26261028 TTAATCATTTGAATTGACATAGGAATATGCAAGAGATTAGTTCAAATTAATGAGTATGTATGTGC
1 TTAATCGTTTGAATTGACATAGGAATATGCAAGAGATTAATTCAAATTAATGAGTATGTATGTGC
26261093 GATAACATGTTTACTTATTAAAATCTAT
66 GATAACATGTTTACTTATTAAAATCTAT
26261121 TTAATCGTTTGAATTGACATAGGAATATGCAAGAGATTAATTCAAATTAATGAGTATGTATGTGC
1 TTAATCGTTTGAATTGACATAGGAATATGCAAGAGATTAATTCAAATTAATGAGTATGTATGTGC
* *
26261186 GATAACATGTTTGCTTATTAAAATCTGT
66 GATAACATGTTTACTTATTAAAATCTAT
*
26261214 TTAATCGTTTGAATTGACATAAGG-ATATGTTAAGAGAT
1 TTAATCGTTTGAATTGACAT-AGGAATATG-CAAGAGAT
26261252 GAATGGATTT
Statistics
Matches: 124, Mismatches: 5, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
93 114 0.92
94 10 0.08
ACGTcount: A:0.37, C:0.08, G:0.18, T:0.38
Consensus pattern (93 bp):
TTAATCGTTTGAATTGACATAGGAATATGCAAGAGATTAATTCAAATTAATGAGTATGTATGTGC
GATAACATGTTTACTTATTAAAATCTAT
Found at i:26262517 original size:13 final size:13
Alignment explanation
Indices: 26262499--26262532 Score: 68
Period size: 13 Copynumber: 2.6 Consensus size: 13
26262489 CTCAGTGTGA
26262499 TCTGAATTCTGAT
1 TCTGAATTCTGAT
26262512 TCTGAATTCTGAT
1 TCTGAATTCTGAT
26262525 TCTGAATT
1 TCTGAATT
26262533 TCGAGTTAGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.24, C:0.15, G:0.15, T:0.47
Consensus pattern (13 bp):
TCTGAATTCTGAT
Found at i:26262520 original size:7 final size:7
Alignment explanation
Indices: 26262499--26262532 Score: 54
Period size: 7 Copynumber: 5.1 Consensus size: 7
26262489 CTCAGTGTGA
26262499 TCTGAAT
1 TCTGAAT
26262506 TCTG-AT
1 TCTGAAT
26262512 TCTGAAT
1 TCTGAAT
26262519 TCTG-AT
1 TCTGAAT
26262525 TCTGAAT
1 TCTGAAT
26262532 T
1 T
26262533 TCGAGTTAGT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
6 12 0.48
7 13 0.52
ACGTcount: A:0.24, C:0.15, G:0.15, T:0.47
Consensus pattern (7 bp):
TCTGAAT
Found at i:26265071 original size:46 final size:46
Alignment explanation
Indices: 26265021--26265193 Score: 192
Period size: 46 Copynumber: 3.7 Consensus size: 46
26265011 TGGTTGAGCA
*
26265021 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
26265067 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
26265112 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
26265160 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
26265194 GGGGCGGGTT
Statistics
Matches: 105, Mismatches: 13, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 59 0.56
47 29 0.28
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:26265177 original size:93 final size:93
Alignment explanation
Indices: 26265018--26265188 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
26265008 GGATGGTTGA
* *
26265018 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
26265083 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
* * *
26265111 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
26265176 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
26265189 ACTTAGGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:26265453 original size:19 final size:20
Alignment explanation
Indices: 26265416--26265453 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
26265406 ATAAGGTGGT
26265416 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
26265436 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
26265454 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:26266798 original size:13 final size:14
Alignment explanation
Indices: 26266775--26266816 Score: 50
Period size: 14 Copynumber: 3.1 Consensus size: 14
26266765 ATATTTTAAT
*
26266775 ATTATTTTATGTG-
1 ATTATTATATGTGA
*
26266788 CTTATTATATGTGA
1 ATTATTATATGTGA
*
26266802 ATTAGTATATGTGA
1 ATTATTATATGTGA
26266816 A
1 A
26266817 AATTTCGTAT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
13 11 0.46
14 13 0.54
ACGTcount: A:0.31, C:0.02, G:0.17, T:0.50
Consensus pattern (14 bp):
ATTATTATATGTGA
Found at i:26268033 original size:42 final size:43
Alignment explanation
Indices: 26267968--26268080 Score: 113
Period size: 43 Copynumber: 2.6 Consensus size: 43
26267958 CATCGACTTA
* *
26267968 TGATTTACGTGTAAGACCATGTCTGGGATACCGAAATC-ATATT
1 TGATTT-CGTGCAAGACCCTGTCTGGGATACCGAAATCGATATT
* ** **
26268011 TGATTTCGTGCAAGACCCTGTCTGAGATAGTGGCATCGATATT
1 TGATTTCGTGCAAGACCCTGTCTGGGATACCGAAATCGATATT
* *
26268054 TGATTACATGCAAGACCAC-GTCTGGGA
1 TGATTTCGTGCAAGACC-CTGTCTGGGA
26268081 CGTTGGCATT
Statistics
Matches: 58, Mismatches: 10, Indels: 4
0.81 0.14 0.06
Matches are distributed among these distances:
42 24 0.41
43 33 0.57
44 1 0.02
ACGTcount: A:0.27, C:0.19, G:0.24, T:0.30
Consensus pattern (43 bp):
TGATTTCGTGCAAGACCCTGTCTGGGATACCGAAATCGATATT
Found at i:26268088 original size:43 final size:43
Alignment explanation
Indices: 26267931--26268089 Score: 110
Period size: 43 Copynumber: 3.7 Consensus size: 43
26267921 TATGTGTTTT
* * *
26267931 CGTGTAAGACCACATCTGAGACGTTGGCATCGACT-TATGATTTA
1 CGTGCAAGACCACGTCTGAGACGTTGGCATCGA-TATTTGA-TTA
* * * **** ** *
26267975 CGTGTAAGACCATGTCTGGGATACCGAAATC-ATATTTGATTT
1 CGTGCAAGACCACGTCTGAGACGTTGGCATCGATATTTGATTA
*
26268017 CGTGCAAGACC-CTGTCTGAGATAG-TGGCATCGATATTTGATTA
1 CGTGCAAGACCAC-GTCTGAGA-CGTTGGCATCGATATTTGATTA
* *
26268060 CATGCAAGACCACGTCTGGGACGTTGGCAT
1 CGTGCAAGACCACGTCTGAGACGTTGGCAT
26268090 TGTATAAGCT
Statistics
Matches: 86, Mismatches: 23, Indels: 13
0.70 0.19 0.11
Matches are distributed among these distances:
42 25 0.29
43 38 0.44
44 23 0.27
ACGTcount: A:0.26, C:0.20, G:0.25, T:0.29
Consensus pattern (43 bp):
CGTGCAAGACCACGTCTGAGACGTTGGCATCGATATTTGATTA
Found at i:26276933 original size:12 final size:12
Alignment explanation
Indices: 26276916--26276975 Score: 54
Period size: 12 Copynumber: 5.0 Consensus size: 12
26276906 ATTTTAATAG
26276916 TTTAATATTAAA
1 TTTAATATTAAA
26276928 TTTAAT-TTAATA
1 TTTAATATTAA-A
26276940 TTT-ATATTAATA
1 TTTAATATTAA-A
**
26276952 TTATTTTATT-AA
1 TT-TAATATTAAA
26276964 TTTAATATTAAA
1 TTTAATATTAAA
26276976 GTGATTATAT
Statistics
Matches: 40, Mismatches: 3, Indels: 10
0.75 0.06 0.19
Matches are distributed among these distances:
11 11 0.28
12 23 0.57
13 2 0.05
14 4 0.10
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (12 bp):
TTTAATATTAAA
Found at i:26277079 original size:20 final size:20
Alignment explanation
Indices: 26277054--26277094 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
26277044 GATTTAATAT
26277054 TAAATTTAATCTAATATTTA
1 TAAATTTAATCTAATATTTA
*
26277074 TAAATTTAATGTAATATTTA
1 TAAATTTAATCTAATATTTA
26277094 T
1 T
26277095 CTTGATAAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.51
Consensus pattern (20 bp):
TAAATTTAATCTAATATTTA
Found at i:26281063 original size:13 final size:14
Alignment explanation
Indices: 26281032--26281065 Score: 59
Period size: 14 Copynumber: 2.4 Consensus size: 14
26281022 AAAGAAAATA
26281032 AAAAATAATTAAAC
1 AAAAATAATTAAAC
*
26281046 AAAAATAATTAGAC
1 AAAAATAATTAAAC
26281060 AAAAAT
1 AAAAAT
26281066 CAAAAATCAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.71, C:0.06, G:0.03, T:0.21
Consensus pattern (14 bp):
AAAAATAATTAAAC
Found at i:26282988 original size:55 final size:54
Alignment explanation
Indices: 26282867--26283063 Score: 159
Period size: 55 Copynumber: 3.7 Consensus size: 54
26282857 AGGGTTTAAG
* * * * * * * * *
26282867 GATAC-CAAGTAAGACCATGCCAAGGCATGGTATTGGTAAGTTCTACAAGGCAAG
1 GATACTCATGTAAGACCATGTCAAGACATGGCAATGATAACTTC-ATAAGGCAAA
* * *
26282921 GA-AATCATGTAAGACCATGTCAAGACATGGCATTGATAAACTATTATAAGGCAAA
1 GATACTCATGTAAGACCATGTCAAGACATGGCAATGAT-AACT-TCATAAGGCAAA
* * * * * *
26282976 GAT-CTCATGTAAGACCATGCCAAGGCATGGCAATGGTGAGTTCATAAGGCAAG
1 GATACTCATGTAAGACCATGTCAAGACATGGCAATGATAACTTCATAAGGCAAA
* *
26283029 GATAC-CACGTAAGACCATGTCAAGACATGGAAATG
1 GATACTCATGTAAGACCATGTCAAGACATGGCAATG
26283064 GTAAGTTTAA
Statistics
Matches: 115, Mismatches: 23, Indels: 11
0.77 0.15 0.07
Matches are distributed among these distances:
53 40 0.35
54 32 0.28
55 42 0.37
56 1 0.01
ACGTcount: A:0.38, C:0.18, G:0.24, T:0.21
Consensus pattern (54 bp):
GATACTCATGTAAGACCATGTCAAGACATGGCAATGATAACTTCATAAGGCAAA
Found at i:26283046 original size:53 final size:53
Alignment explanation
Indices: 26282864--26283070 Score: 209
Period size: 53 Copynumber: 3.8 Consensus size: 53
26282854 ATTAGGGTTT
* * * * *
26282864 AAGGATACCAAGTAAGACCATGCCAAGGCATGGTATTGGTAAGTTCTACAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTC-ATAAGGC
* * * * * * *
26282918 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAACTATTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGT-AAGT-TCATAAGGC
* * *
26282973 AAAGAT-CTCATGTAAGACCATGCCAAGGCATGGCAATGGTGAGTTCATAAGGC
1 AAGGATAC-CATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCATAAGGC
* * *
26283026 AAGGATACCACGTAAGACCATGTCAAGACATGGAAATGGTAAGTT
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTT
26283071 TAAAAAGGAA
Statistics
Matches: 123, Mismatches: 26, Indels: 9
0.78 0.16 0.06
Matches are distributed among these distances:
53 45 0.37
54 36 0.29
55 41 0.33
56 1 0.01
ACGTcount: A:0.38, C:0.17, G:0.24, T:0.21
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCATAAGGC
Found at i:26286660 original size:17 final size:17
Alignment explanation
Indices: 26286640--26286681 Score: 75
Period size: 17 Copynumber: 2.5 Consensus size: 17
26286630 AGGGCACCGT
26286640 AGTGTAAAGGGCATTAA
1 AGTGTAAAGGGCATTAA
26286657 AGTGTAAAGGGCATTAA
1 AGTGTAAAGGGCATTAA
*
26286674 AATGTAAA
1 AGTGTAAA
26286682 CAATATAAGC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 24 1.00
ACGTcount: A:0.45, C:0.05, G:0.26, T:0.24
Consensus pattern (17 bp):
AGTGTAAAGGGCATTAA
Found at i:26290545 original size:14 final size:14
Alignment explanation
Indices: 26290526--26290556 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
26290516 GTGTTATGTG
26290526 TTTGATCTCGGATA
1 TTTGATCTCGGATA
26290540 TTTGATCTCGGATA
1 TTTGATCTCGGATA
26290554 TTT
1 TTT
26290557 TAGCCTTATG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.19, C:0.13, G:0.19, T:0.48
Consensus pattern (14 bp):
TTTGATCTCGGATA
Found at i:26294323 original size:16 final size:17
Alignment explanation
Indices: 26294302--26294335 Score: 61
Period size: 16 Copynumber: 2.1 Consensus size: 17
26294292 TTGATTACTT
26294302 TCTTTGTATTAAG-AAA
1 TCTTTGTATTAAGCAAA
26294318 TCTTTGTATTAAGCAAA
1 TCTTTGTATTAAGCAAA
26294335 T
1 T
26294336 TATTCTCAGT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 13 0.76
17 4 0.24
ACGTcount: A:0.35, C:0.09, G:0.12, T:0.44
Consensus pattern (17 bp):
TCTTTGTATTAAGCAAA
Found at i:26295435 original size:10 final size:9
Alignment explanation
Indices: 26295420--26295458 Score: 51
Period size: 10 Copynumber: 4.1 Consensus size: 9
26295410 TATCAAAATT
26295420 ATAATATAA
1 ATAATATAA
26295429 CATAATATAA
1 -ATAATATAA
*
26295439 ATATTATAA
1 ATAATATAA
26295448 ATAATTATAA
1 ATAA-TATAA
26295458 A
1 A
26295459 ACAAATATAT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
9 11 0.42
10 15 0.58
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.36
Consensus pattern (9 bp):
ATAATATAA
Found at i:26295457 original size:24 final size:24
Alignment explanation
Indices: 26295403--26295451 Score: 66
Period size: 24 Copynumber: 2.0 Consensus size: 24
26295393 ATCATCTCAT
26295403 ACATATATATCAAA-ATTATAATATA
1 ACATA-ATAT-AAATATTATAATATA
26295428 ACATAATATAAATATTATAA-ATA
1 ACATAATATAAATATTATAATATA
26295451 A
1 A
26295452 TTATAAAACA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
23 7 0.30
24 11 0.48
25 5 0.22
ACGTcount: A:0.59, C:0.06, G:0.00, T:0.35
Consensus pattern (24 bp):
ACATAATATAAATATTATAATATA
Found at i:26297517 original size:40 final size:40
Alignment explanation
Indices: 26297462--26297564 Score: 154
Period size: 40 Copynumber: 2.6 Consensus size: 40
26297452 TGAATGATAC
* * *
26297462 CCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTCATGCGAGTTG-TTATAT
*
26297502 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTCATGCGAGTTGTTATAT
26297542 CCGGGCTAAGACCCGAAGGCATT
1 CCGGGCTAAGACCCGAAGGCATT
26297565 GGTGCAAGTT
Statistics
Matches: 58, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
40 56 0.97
41 2 0.03
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTCATGCGAGTTGTTATAT
Found at i:26297592 original size:40 final size:40
Alignment explanation
Indices: 26297500--26297595 Score: 111
Period size: 40 Copynumber: 2.4 Consensus size: 40
26297490 TAGTGATTAT
* * *** *
26297500 ATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTAT
1 ATCCAGGCTAAGACCCGAAGGCATTCGTGCAAGTTACCAA
* *
26297540 ATCCGGGCTAAGACCCGAAGGCATTGGTGCAAGTTACCAA
1 ATCCAGGCTAAGACCCGAAGGCATTCGTGCAAGTTACCAA
*
26297580 ATCCAGGTTAAGACCC
1 ATCCAGGCTAAGACCC
26297596 AAAAGCAATT
Statistics
Matches: 48, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 48 1.00
ACGTcount: A:0.27, C:0.25, G:0.27, T:0.21
Consensus pattern (40 bp):
ATCCAGGCTAAGACCCGAAGGCATTCGTGCAAGTTACCAA
Found at i:26299385 original size:42 final size:44
Alignment explanation
Indices: 26299331--26299415 Score: 129
Period size: 42 Copynumber: 2.0 Consensus size: 44
26299321 ATCACTTTAA
*
26299331 TATTAAATTAATATAATACTTA-T-CAAGATAAATATTAAATAT
1 TATTAAATTAATAGAATACTTACTACAAGATAAATATTAAATAT
*
26299373 TATTAAATTAATAGAATATTTATCTACAAGATAAATATTAAAT
1 TATTAAATTAATAGAATACTTA-CTACAAGATAAATATTAAAT
26299416 TAAATTTAAT
Statistics
Matches: 38, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
42 20 0.53
44 1 0.03
45 17 0.45
ACGTcount: A:0.52, C:0.05, G:0.04, T:0.40
Consensus pattern (44 bp):
TATTAAATTAATAGAATACTTACTACAAGATAAATATTAAATAT
Found at i:26303330 original size:40 final size:40
Alignment explanation
Indices: 26303271--26303478 Score: 204
Period size: 40 Copynumber: 5.2 Consensus size: 40
26303261 CGGAATACAA
* * *
26303271 CCGGATATAACCACATGCACGAATGCCTTTGGGTCTTAGC
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGC
* * * *
26303311 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGC
*
26303351 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGC
* * * * *
26303391 CCGGATGTAGTC-GCTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATA-ACAACTTGCACGAA-TGCCTTCGGGTCTTAGC
** * ** * *
26303431 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGC
26303471 CCGGATAT
1 CCGGATAT
26303479 CATTCAATTG
Statistics
Matches: 140, Mismatches: 24, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
39 2 0.01
40 135 0.96
41 3 0.02
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGC
Found at i:26303411 original size:80 final size:81
Alignment explanation
Indices: 26303271--26303476 Score: 238
Period size: 80 Copynumber: 2.6 Consensus size: 81
26303261 CGGAATACAA
* * * *
26303271 CCGGATATAACCACATGCACGAATGCCTTTGGGTCTTAGCCCGGA-TAGAACGACTTGCACAAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
*
26303335 GCCTTCGGGTATTAGC
66 GCCTTCGGGTATTAAC
* * *
26303351 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAG-TCG-CTAGCACAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-TAGAACGACTAGCACAAA
*
26303414 TGCCTTCGGGTCTTAAC
65 TGCCTTCGGGTATTAAC
** * ** * *
26303431 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT
26303477 ATCATTCAAT
Statistics
Matches: 107, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
80 102 0.95
81 2 0.02
82 3 0.03
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (81 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
GCCTTCGGGTATTAAC
Found at i:26309131 original size:40 final size:39
Alignment explanation
Indices: 26309086--26309293 Score: 218
Period size: 40 Copynumber: 5.2 Consensus size: 39
26309076 CGGAATACAA
*
26309086 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
26309126 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
26309166 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* ** * *
26309206 CCGGATGTAGTCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
** * * *
26309246 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
26309286 CCGGATAT
1 CCGGATAT
26309294 CATTCAATTG
Statistics
Matches: 142, Mismatches: 25, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
39 1 0.01
40 141 0.99
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:26309226 original size:80 final size:81
Alignment explanation
Indices: 26309086--26309291 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 81
26309076 CGGAATACAA
* * *
26309086 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGA-TAGAACGACTTGCACAAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
*
26309150 GCCTTCGGGTATTAGC
66 GCCTTCGGGTATTAAC
* * *
26309166 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAG-TC-ACTAGCACAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-TAGAACGACTAGCACAAA
*
26309229 TGCCTTCGGGTCTTAAC
65 TGCCTTCGGGTATTAAC
** * ** * *
26309246 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT
26309292 ATCATTCAAT
Statistics
Matches: 108, Mismatches: 16, Indels: 4
0.84 0.12 0.03
Matches are distributed among these distances:
80 104 0.96
81 1 0.01
82 3 0.03
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (81 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
GCCTTCGGGTATTAAC
Found at i:26312064 original size:2 final size:2
Alignment explanation
Indices: 26312057--26312092 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
26312047 TTCAAGGACC
26312057 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
26312093 TCCAAAGGCT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
GA
Found at i:26318119 original size:21 final size:21
Alignment explanation
Indices: 26318094--26318142 Score: 89
Period size: 21 Copynumber: 2.3 Consensus size: 21
26318084 TTTTTTGTCT
26318094 ATTTTAGTACTTAAACTTGTA
1 ATTTTAGTACTTAAACTTGTA
26318115 ATTTTAGTACTTAAACTTGTA
1 ATTTTAGTACTTAAACTTGTA
26318136 ATGTTTA
1 AT-TTTA
26318143 TCAAATTATT
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
21 23 0.85
22 4 0.15
ACGTcount: A:0.33, C:0.08, G:0.10, T:0.49
Consensus pattern (21 bp):
ATTTTAGTACTTAAACTTGTA
Found at i:26322633 original size:79 final size:79
Alignment explanation
Indices: 26322502--26322661 Score: 311
Period size: 79 Copynumber: 2.0 Consensus size: 79
26322492 TTCCCCCATT
*
26322502 GCCCTTCTCTTTGGGCTTGAAAAACTTGAACTTGTCTTTCCTCGAAACAATCTCAAGCAAAGACT
1 GCCCTTCCCTTTGGGCTTGAAAAACTTGAACTTGTCTTTCCTCGAAACAATCTCAAGCAAAGACT
26322567 CAGCTACAATCATA
66 CAGCTACAATCATA
26322581 GCCCTTCCCTTTGGGCTTGAAAAACTTGAACTTGTCTTTCCTCGAAACAATCTCAAGCAAAGACT
1 GCCCTTCCCTTTGGGCTTGAAAAACTTGAACTTGTCTTTCCTCGAAACAATCTCAAGCAAAGACT
26322646 CAGCTACAATCATA
66 CAGCTACAATCATA
26322660 GC
1 GC
26322662 TTTTGATAGT
Statistics
Matches: 80, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
79 80 1.00
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.28
Consensus pattern (79 bp):
GCCCTTCCCTTTGGGCTTGAAAAACTTGAACTTGTCTTTCCTCGAAACAATCTCAAGCAAAGACT
CAGCTACAATCATA
Found at i:26326511 original size:2 final size:2
Alignment explanation
Indices: 26326504--26326543 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
26326494 ATGCTCAAAC
26326504 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
26326544 CAAAGCAAAC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:26329551 original size:11 final size:11
Alignment explanation
Indices: 26329532--26329556 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
26329522 ACAATAACAA
26329532 CAATATAATAG
1 CAATATAATAG
26329543 CAATATAATAG
1 CAATATAATAG
26329554 CAA
1 CAA
26329557 AATGACATCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.56, C:0.12, G:0.08, T:0.24
Consensus pattern (11 bp):
CAATATAATAG
Found at i:26333932 original size:24 final size:27
Alignment explanation
Indices: 26333876--26333934 Score: 67
Period size: 24 Copynumber: 2.4 Consensus size: 27
26333866 ATTTTTGTTT
26333876 TATTCTTTTAATTACATGTTAATTTAAA
1 TATT-TTTTAATTACATGTTAATTTAAA
26333904 -A--TTTTAATTA-AT-TTAA-TTAAA
1 TATTTTTTAATTACATGTTAATTTAAA
26333925 TATTTTTTAA
1 TATTTTTTAA
26333935 AAATATATGT
Statistics
Matches: 28, Mismatches: 0, Indels: 10
0.74 0.00 0.26
Matches are distributed among these distances:
21 5 0.18
22 5 0.18
23 2 0.07
24 15 0.54
27 1 0.04
ACGTcount: A:0.39, C:0.03, G:0.02, T:0.56
Consensus pattern (27 bp):
TATTTTTTAATTACATGTTAATTTAAA
Found at i:26336451 original size:96 final size:96
Alignment explanation
Indices: 26336331--26336551 Score: 259
Period size: 96 Copynumber: 2.3 Consensus size: 96
26336321 ACCTCATATT
* * * *
26336331 GATGCCATGTCCTAGACATGGTCTTATA-T-GAAATCACTTAACGATA-CCAAAGCCATATCCTT
1 GATGCCATGTCCCAGACATGGTCTTACACTAG-AA-CACATAAC-AAAGCCAAAGCCATATCCTT
*
26336393 GATATGGTATTATACAGGATCACATATTGGTGTC
63 GATATGGTATTATACAGGATCACATATTGGTGCC
* * * * * *
26336427 GATGCCATATCCCAGACATGGTCTTACACTAGCACACATATCAAAGTCGATGCCATATCCTTGAT
1 GATGCCATGTCCCAGACATGGTCTTACACTAGAACACATAACAAAGCCAAAGCCATATCCTTGAT
* *
26336492 ATGGTCTTATACGGGATCACATATTGGTGCC
66 ATGGTATTATACAGGATCACATATTGGTGCC
**
26336523 GGCGCCATGTCCCAGACATGGTCTTACAC
1 GATGCCATGTCCCAGACATGGTCTTACAC
26336552 GGGATCTCAT
Statistics
Matches: 106, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
95 2 0.02
96 101 0.95
97 2 0.02
98 1 0.01
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.29
Consensus pattern (96 bp):
GATGCCATGTCCCAGACATGGTCTTACACTAGAACACATAACAAAGCCAAAGCCATATCCTTGAT
ATGGTATTATACAGGATCACATATTGGTGCC
Found at i:26336610 original size:49 final size:49
Alignment explanation
Indices: 26336382--26336606 Score: 215
Period size: 48 Copynumber: 4.7 Consensus size: 49
26336372 CGATACCAAA
** * * * * *
26336382 GCCATATCCTTGATATGGTATTATACAGGATCACATATTGG-TGTCGAT
1 GCCATATCCCAGACATGGTCTTACACGGGATCACATATCGGATGTCGAT
* * * *
26336430 GCCATATCCCAGACATGGTCTTACACTAGCA-CACATATC-AAAGTCGAT
1 GCCATATCCCAGACATGGTCTTACAC-GGGATCACATATCGGATGTCGAT
** * * * * **
26336478 GCCATATCCTTGATATGGTCTTATACGGGATCACATATTGG-TGCCGGC
1 GCCATATCCCAGACATGGTCTTACACGGGATCACATATCGGATGTCGAT
* * *
26336526 GCCATGTCCCAGACATGGTCTTACACGGGATCTCATCTCGGATGTCGAT
1 GCCATATCCCAGACATGGTCTTACACGGGATCACATATCGGATGTCGAT
26336575 GCCATATCCCAGACATGGTCTTACACGGGATC
1 GCCATATCCCAGACATGGTCTTACACGGGATC
26336607 TCATTAACCA
Statistics
Matches: 139, Mismatches: 33, Indels: 9
0.77 0.18 0.05
Matches are distributed among these distances:
47 2 0.01
48 99 0.71
49 38 0.27
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.28
Consensus pattern (49 bp):
GCCATATCCCAGACATGGTCTTACACGGGATCACATATCGGATGTCGAT
Found at i:26338843 original size:4 final size:4
Alignment explanation
Indices: 26338836--26338862 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
26338826 TTGCTTTTAT
26338836 TTAA TTAA TTAA TTAA TTAA TTAA TTA
1 TTAA TTAA TTAA TTAA TTAA TTAA TTA
26338863 TTTTATTTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (4 bp):
TTAA
Found at i:26338870 original size:5 final size:5
Alignment explanation
Indices: 26338860--26338905 Score: 64
Period size: 5 Copynumber: 10.0 Consensus size: 5
26338850 AATTAATTAA
26338860 TTATT TTA-T TTA-T TTA-T TTA-T TTATT TTATT TTATT TTATT TTATT
1 TTATT TTATT TTATT TTATT TTATT TTATT TTATT TTATT TTATT TTATT
26338906 ATTTTAGTTC
Statistics
Matches: 40, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
4 16 0.40
5 24 0.60
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (5 bp):
TTATT
Found at i:26338871 original size:4 final size:4
Alignment explanation
Indices: 26338831--26338901 Score: 52
Period size: 4 Copynumber: 16.8 Consensus size: 4
26338821 CCTCCTTGCT
* * * * * *
26338831 TTTA TTTA ATTA ATTA ATTA ATTA ATTA ATTA TTTTA TTTA TTTA TTTA
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA -TTTA TTTA TTTA TTTA
26338880 TTTA TTTTA TTTTA TTTTA TTT
1 TTTA -TTTA -TTTA -TTTA TTT
26338902 TATTATTTTA
Statistics
Matches: 63, Mismatches: 2, Indels: 4
0.91 0.03 0.06
Matches are distributed among these distances:
4 46 0.73
5 17 0.27
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (4 bp):
TTTA
Found at i:26340519 original size:26 final size:27
Alignment explanation
Indices: 26340478--26340535 Score: 82
Period size: 26 Copynumber: 2.2 Consensus size: 27
26340468 AGATCACTAA
*
26340478 TTTTATTTCTTTTCTTTTCATTTTTAT
1 TTTTATTTCTTATCTTTTCATTTTTAT
* *
26340505 TTTTATTT-TTATCTTTTTATTTTTGT
1 TTTTATTTCTTATCTTTTCATTTTTAT
26340531 TTTTA
1 TTTTA
26340536 GTTGTTTTAT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
26 20 0.71
27 8 0.29
ACGTcount: A:0.12, C:0.07, G:0.02, T:0.79
Consensus pattern (27 bp):
TTTTATTTCTTATCTTTTCATTTTTAT
Found at i:26340523 original size:20 final size:20
Alignment explanation
Indices: 26340498--26340554 Score: 80
Period size: 20 Copynumber: 2.8 Consensus size: 20
26340488 TTTCTTTTCA
26340498 TTTTTATTTTTATTTTTA-T
1 TTTTTATTTTTATTTTTAGT
*
26340517 CTTTTTATTTTTGTTTTTAGT
1 -TTTTTATTTTTATTTTTAGT
26340538 TGTTTTATTTTTATTTT
1 T-TTTTATTTTTATTTT
26340555 CTTTGACCTC
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
20 18 0.55
21 15 0.45
ACGTcount: A:0.12, C:0.02, G:0.05, T:0.81
Consensus pattern (20 bp):
TTTTTATTTTTATTTTTAGT
Found at i:26340548 original size:5 final size:6
Alignment explanation
Indices: 26340487--26340554 Score: 64
Period size: 6 Copynumber: 10.5 Consensus size: 6
26340477 ATTTTATTTC
* * *
26340487 TTTTCT TTTCAT TTTTAT TTTTAT TTTTATCT TTTTAT TTTTGT TTTTAGTT
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTA--T TTTTAT TTTTAT TTTTA--T
26340539 GTTTTAT TTTTAT TTT
1 -TTTTAT TTTTAT TTT
26340555 CTTTGACCTC
Statistics
Matches: 52, Mismatches: 5, Indels: 10
0.78 0.07 0.15
Matches are distributed among these distances:
6 39 0.75
7 1 0.02
8 7 0.13
9 5 0.10
ACGTcount: A:0.12, C:0.04, G:0.04, T:0.79
Consensus pattern (6 bp):
TTTTAT
Found at i:26345131 original size:64 final size:64
Alignment explanation
Indices: 26344982--26345233 Score: 208
Period size: 67 Copynumber: 3.9 Consensus size: 64
26344972 ATACAGATGG
* ** * * * *
26344982 TATGTAGCTAGGTCACATGTATGGTGCTGA-GTGCACATCATGT-GTACAAGAGAGCTACAGACA
1 TATGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAGCTAC-GAGA
26345045 TTA
63 -TA
* *
26345048 TGATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATA
1 T-ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATA
* * * * * *
26345113 TATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATATAGACAAGAGAGCTACGAGA
1 TATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGA
26345178 TA
63 TA
* * * *
26345180 AACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 TA-TGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAG-ACAAGAGAGC
26345234 CGAACTATAT
Statistics
Matches: 151, Mismatches: 27, Indels: 19
0.77 0.14 0.10
Matches are distributed among these distances:
62 1 0.01
63 18 0.12
64 25 0.17
65 3 0.02
66 25 0.17
67 76 0.50
68 3 0.02
ACGTcount: A:0.30, C:0.17, G:0.29, T:0.24
Consensus pattern (64 bp):
TATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATA
Found at i:26346287 original size:2 final size:2
Alignment explanation
Indices: 26346280--26346317 Score: 58
Period size: 2 Copynumber: 19.0 Consensus size: 2
26346270 GAAAACAGAA
* *
26346280 AT AT AT AT AC AT AT AT AT AT AT AT AT AT AT AT GT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
26346318 GACTAGTCTC
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47
Consensus pattern (2 bp):
AT
Found at i:26351327 original size:24 final size:24
Alignment explanation
Indices: 26351295--26351501 Score: 351
Period size: 24 Copynumber: 8.6 Consensus size: 24
26351285 TATCTCAAAT
26351295 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
26351319 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
*
26351343 GCACTATGTGTGCGATTCACTATG
1 GCACTATGTGTGCGATTTACTATG
26351367 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
26351391 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
*
26351415 GCACTATGTGTGCGATTTACTATA
1 GCACTATGTGTGCGATTTACTATG
* *
26351439 GCACTATGTGTGCGATTTGCTATA
1 GCACTATGTGTGCGATTTACTATG
* *
26351463 GCACTATGTGTGCGATTTGCTATA
1 GCACTATGTGTGCGATTTACTATG
*
26351487 GCTCTATGTGTGCGA
1 GCACTATGTGTGCGA
26351502 ACATAATAAG
Statistics
Matches: 178, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 178 1.00
ACGTcount: A:0.21, C:0.17, G:0.25, T:0.37
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATG
Found at i:26358578 original size:2 final size:2
Alignment explanation
Indices: 26358571--26358605 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
26358561 ATCGGGTATG
26358571 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
26358606 GCCCATTCAT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:26359098 original size:24 final size:24
Alignment explanation
Indices: 26359049--26359254 Score: 324
Period size: 24 Copynumber: 8.6 Consensus size: 24
26359039 TATCTCAAAT
26359049 GCACTATGTGTGCGA-TTACTATG
1 GCACTATGTGTGCGATTTACTATG
*
26359072 GCACTATGTGTGCGATTCACTATG
1 GCACTATGTGTGCGATTTACTATG
*
26359096 GCACTATGTGTGCGATTCACTATG
1 GCACTATGTGTGCGATTTACTATG
*
26359120 GCACTATGTGTGCGATTCACTATG
1 GCACTATGTGTGCGATTTACTATG
26359144 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
*
26359168 GCACTATGTGTGCGATTTACTATA
1 GCACTATGTGTGCGATTTACTATG
* *
26359192 GCACTATGTGTGCGATTTGCTATA
1 GCACTATGTGTGCGATTTACTATG
* *
26359216 GCACTATGTGTGCGATTTGCTATA
1 GCACTATGTGTGCGATTTACTATG
*
26359240 GCTCTATGTGTGCGA
1 GCACTATGTGTGCGA
26359255 ACATAATAAG
Statistics
Matches: 177, Mismatches: 5, Indels: 1
0.97 0.03 0.01
Matches are distributed among these distances:
23 15 0.08
24 162 0.92
ACGTcount: A:0.21, C:0.18, G:0.25, T:0.35
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATG
Found at i:26380983 original size:24 final size:24
Alignment explanation
Indices: 26380956--26381018 Score: 126
Period size: 24 Copynumber: 2.6 Consensus size: 24
26380946 CTTATTATGT
26380956 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
26380980 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
26381004 TCGCACACATAGTGC
1 TCGCACACATAGTGC
26381019 ATTTGAGATT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 39 1.00
ACGTcount: A:0.35, C:0.27, G:0.17, T:0.21
Consensus pattern (24 bp):
TCGCACACATAGTGCCATAGTAAA
Found at i:26394520 original size:31 final size:31
Alignment explanation
Indices: 26394473--26394541 Score: 84
Period size: 31 Copynumber: 2.2 Consensus size: 31
26394463 TTAAGAATAA
* * **
26394473 AAGAGTTGAGAAAATTGCGAGAGTAGATGTAT
1 AAGA-TTGAGAAAATTGAGAGAATAGATAAAT
*
26394505 AAGATTGAGAGAATTGAGAGAATAGATAAAT
1 AAGATTGAGAAAATTGAGAGAATAGATAAAT
26394536 AAGATT
1 AAGATT
26394542 AAATAAATTT
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
31 28 0.88
32 4 0.12
ACGTcount: A:0.46, C:0.01, G:0.28, T:0.25
Consensus pattern (31 bp):
AAGATTGAGAAAATTGAGAGAATAGATAAAT
Found at i:26407504 original size:22 final size:22
Alignment explanation
Indices: 26407448--26407504 Score: 60
Period size: 22 Copynumber: 2.6 Consensus size: 22
26407438 AAAATTATAA
** *
26407448 ATTATTAAAATAATAAAATTAT
1 ATTATTAAAATCGTAAAAATAT
* **
26407470 ATTTTTATTATCGTAAAAATAT
1 ATTATTAAAATCGTAAAAATAT
26407492 ATTATTAAAATCG
1 ATTATTAAAATCG
26407505 AATCTTTCTC
Statistics
Matches: 26, Mismatches: 9, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.49, C:0.04, G:0.04, T:0.44
Consensus pattern (22 bp):
ATTATTAAAATCGTAAAAATAT
Found at i:26407661 original size:16 final size:16
Alignment explanation
Indices: 26407642--26407672 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
26407632 TATTTGTGTT
*
26407642 TTATGTTTAAAATTTA
1 TTATGATTAAAATTTA
26407658 TTATGATTAAAATTT
1 TTATGATTAAAATTT
26407673 TAATAATTTA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.39, C:0.00, G:0.06, T:0.55
Consensus pattern (16 bp):
TTATGATTAAAATTTA
Found at i:26412931 original size:30 final size:30
Alignment explanation
Indices: 26412890--26412952 Score: 117
Period size: 30 Copynumber: 2.1 Consensus size: 30
26412880 TTATGGAAAG
*
26412890 AGATTATCCGTTTTGGCGTGACAGATCTGT
1 AGATTACCCGTTTTGGCGTGACAGATCTGT
26412920 AGATTACCCGTTTTGGCGTGACAGATCTGT
1 AGATTACCCGTTTTGGCGTGACAGATCTGT
26412950 AGA
1 AGA
26412953 CACTCAATTT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.22, C:0.17, G:0.27, T:0.33
Consensus pattern (30 bp):
AGATTACCCGTTTTGGCGTGACAGATCTGT
Found at i:26412964 original size:30 final size:30
Alignment explanation
Indices: 26412900--26412964 Score: 87
Period size: 30 Copynumber: 2.2 Consensus size: 30
26412890 AGATTATCCG
* **
26412900 TTTTGGCGTGACAGATCTGTAGATTACCCG
1 TTTTGGCGTGACAGATCTGTAGATCACCAA
26412930 TTTTGGCGTGACAGATCTGTAGA-CACTCAA
1 TTTTGGCGTGACAGATCTGTAGATCAC-CAA
26412960 TTTTG
1 TTTTG
26412965 CCCGGGCCCA
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
29 2 0.06
30 29 0.94
ACGTcount: A:0.22, C:0.18, G:0.25, T:0.35
Consensus pattern (30 bp):
TTTTGGCGTGACAGATCTGTAGATCACCAA
Found at i:26413191 original size:18 final size:19
Alignment explanation
Indices: 26413138--26413251 Score: 178
Period size: 19 Copynumber: 5.9 Consensus size: 19
26413128 ATAATCTTCA
26413138 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
26413157 ATGATATGATACAATCTTAGAT
1 ATGATATG---CAATCTTAGAT
26413179 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
*
26413197 GTGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
26413216 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
26413234 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
26413252 AGATTTGATT
Statistics
Matches: 88, Mismatches: 2, Indels: 10
0.88 0.02 0.10
Matches are distributed among these distances:
18 33 0.38
19 37 0.42
21 2 0.02
22 16 0.18
ACGTcount: A:0.36, C:0.11, G:0.17, T:0.37
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:26413218 original size:37 final size:37
Alignment explanation
Indices: 26413138--26413251 Score: 183
Period size: 37 Copynumber: 3.0 Consensus size: 37
26413128 ATAATCTTCA
26413138 ATGATATGCAATCTTAGATATGATATGATACAATCTTAGAT
1 ATGAT-TGCAATCTTAGATATGATATG---CAATCTTAGAT
*
26413179 ATGATTGCAATCTTAGATGTGATATGCAATCTTAGAT
1 ATGATTGCAATCTTAGATATGATATGCAATCTTAGAT
26413216 ATGATTGCAATCTTAGATATGATATGCAATCTTAGA
1 ATGATTGCAATCTTAGATATGATATGCAATCTTAGA
26413252 AGATTTGATT
Statistics
Matches: 71, Mismatches: 2, Indels: 4
0.92 0.03 0.05
Matches are distributed among these distances:
37 46 0.65
40 20 0.28
41 5 0.07
ACGTcount: A:0.36, C:0.11, G:0.17, T:0.37
Consensus pattern (37 bp):
ATGATTGCAATCTTAGATATGATATGCAATCTTAGAT
Found at i:26417364 original size:40 final size:39
Alignment explanation
Indices: 26417270--26417414 Score: 155
Period size: 40 Copynumber: 3.6 Consensus size: 39
26417260 TACTCGAATG
* *
26417270 ATATCCGGGCTAAGTCCCAAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGT-CCGAAGGCATTTGTGCT-AGCGACT
* *
26417311 ACATCCGGACTAAGATCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAG-TCCGAAGGCATTTGTGCTAGCGACT
* * * *
26417351 ATATCTGGGCTAAGTCTCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTC-CGAAGGCATTTGTGCTAGCGACT
* *
26417391 ATATTCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAG-TCCGAAGGC
26417415 CTTGTGCGAG
Statistics
Matches: 88, Mismatches: 13, Indels: 7
0.81 0.12 0.06
Matches are distributed among these distances:
39 2 0.02
40 57 0.65
41 28 0.32
42 1 0.01
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (39 bp):
ATATCCGGGCTAAGTCCGAAGGCATTTGTGCTAGCGACT
Found at i:26420721 original size:17 final size:17
Alignment explanation
Indices: 26420701--26420734 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
26420691 GTTGTTAAAA
26420701 AGAGAAAGAAAAAAGAG
1 AGAGAAAGAAAAAAGAG
* *
26420718 AGAGAGAGAGAAAAGAG
1 AGAGAAAGAAAAAAGAG
26420735 TCACGGCTAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.65, C:0.00, G:0.35, T:0.00
Consensus pattern (17 bp):
AGAGAAAGAAAAAAGAG
Found at i:26423252 original size:8 final size:7
Alignment explanation
Indices: 26423229--26423287 Score: 70
Period size: 7 Copynumber: 8.6 Consensus size: 7
26423219 ACTTCTATTT
26423229 AAAAA-A
1 AAAAAGA
26423235 AAAAAGA
1 AAAAAGA
*
26423242 AAAAGGA
1 AAAAAGA
26423249 AAAAAG-
1 AAAAAGA
26423255 -AAAAGA
1 AAAAAGA
26423261 AAAAGAGAA
1 AAAA-AG-A
26423270 AAAAAGA
1 AAAAAGA
26423277 AAAAAGA
1 AAAAAGA
26423284 AAAA
1 AAAA
26423288 TGGAGAGGCC
Statistics
Matches: 46, Mismatches: 2, Indels: 9
0.81 0.04 0.16
Matches are distributed among these distances:
5 5 0.11
6 5 0.11
7 27 0.59
8 4 0.09
9 5 0.11
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (7 bp):
AAAAAGA
Found at i:26423253 original size:19 final size:20
Alignment explanation
Indices: 26423229--26423279 Score: 77
Period size: 19 Copynumber: 2.5 Consensus size: 20
26423219 ACTTCTATTT
26423229 AAAAAAAAAAAGAAAAAG-G
1 AAAAAAAAAAAGAAAAAGAG
*
26423248 AAAAAAGAAAAGAAAAAGAG
1 AAAAAAAAAAAGAAAAAGAG
26423268 AAAAAAAGAAAA
1 AAAAAAA-AAAA
26423280 AAGAAAAATG
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
19 17 0.61
20 7 0.25
21 4 0.14
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (20 bp):
AAAAAAAAAAAGAAAAAGAG
Found at i:26423272 original size:28 final size:26
Alignment explanation
Indices: 26423229--26423287 Score: 82
Period size: 28 Copynumber: 2.2 Consensus size: 26
26423219 ACTTCTATTT
*
26423229 AAAAAAAAAAAGAAAAAGGAAAAAAG
1 AAAAAAAAAAAGAAAAAAGAAAAAAG
*
26423255 AAAAGAAAAAGAGAAAAAAAGAAAAAAG
1 AAAA-AAAAAAAG-AAAAAAGAAAAAAG
26423283 AAAAA
1 AAAAA
26423288 TGGAGAGGCC
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
26 4 0.14
27 8 0.28
28 17 0.59
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (26 bp):
AAAAAAAAAAAGAAAAAAGAAAAAAG
Found at i:26424270 original size:44 final size:44
Alignment explanation
Indices: 26424213--26424441 Score: 264
Period size: 44 Copynumber: 5.2 Consensus size: 44
26424203 GAGCCAAGAT
* * *
26424213 GATTTGGCGTCTCTGTATTGTCA-AGGAGCAGATCGAAGATGACA
1 GATTTGGCATCTCTGTATTGGCAGA-GAGCAGATCGAAGATAACA
* * * *
26424257 GATTTGGCATCTCTGTATTGTCAGATAGCAGATCAAAGATAATA
1 GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATAACA
*
26424301 GATTTGACATCTCTGTATTGGCAGAGAGCAGATCGAAGATAACA
1 GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATAACA
* * * * *
26424345 GATTTGGCATCTTTGTATTGACAGAGAGTAGATCGAAGACAGCA
1 GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATAACA
* * * *
26424389 GATTTGAC-TCTCTGTATTGGCAGGGAGCAGATCGAGGACATAACT
1 GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGA--AGATAACA
26424434 GATTTGGC
1 GATTTGGC
26424442 TTTCACGTGT
Statistics
Matches: 156, Mismatches: 26, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
43 23 0.15
44 121 0.78
45 12 0.08
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.28
Consensus pattern (44 bp):
GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATAACA
Found at i:26424488 original size:87 final size:87
Alignment explanation
Indices: 26424389--26424752 Score: 577
Period size: 87 Copynumber: 4.2 Consensus size: 87
26424379 GAAGACAGCA
* * *
26424389 GATTTGAC-TCTCTGTATTGGCAGGGAGCAGATCGAGGACATAACTGATTTGGCTTTCACGTGTT
1 GATTTGGCATCTCTGTATTGGCAGGGAGCAGATCGAAGACATAGCTGATTTGGCTTTCACGTGTT
26424453 TACGTTGAAGCAAATCTAAGAT
66 TACGTTGAAGCAAATCTAAGAT
* * * *
26424475 GATTTAGAATCTCTGTATTGACAGGGAGCAGATCGAAGACATAGCTGATTTGGCTTTCACTTGTT
1 GATTTGGCATCTCTGTATTGGCAGGGAGCAGATCGAAGACATAGCTGATTTGGCTTTCACGTGTT
26424540 TACGTTGAAGCAAATCTAAGAT
66 TACGTTGAAGCAAATCTAAGAT
* * *
26424562 GATTTGGCGTATCTGTATTGGCAGGGAGCAGATCGAAGACATAGCTGATTTGGTTTTCACGTGTT
1 GATTTGGCATCTCTGTATTGGCAGGGAGCAGATCGAAGACATAGCTGATTTGGCTTTCACGTGTT
*
26424627 TACGTTGAAGCAAATCTAAAAT
66 TACGTTGAAGCAAATCTAAGAT
* * *
26424649 GATTTGGCGTCTCTGTATTGGCAGGGAGCAGATCGAAGACATAGCAGATTTAGCTTTCACGTGTT
1 GATTTGGCATCTCTGTATTGGCAGGGAGCAGATCGAAGACATAGCTGATTTGGCTTTCACGTGTT
* *
26424714 TACGCTGAAGCAGATCTAAGAT
66 TACGTTGAAGCAAATCTAAGAT
26424736 GATTTGGCATCTCTGTA
1 GATTTGGCATCTCTGTA
26424753 CTATCAGAGA
Statistics
Matches: 254, Mismatches: 23, Indels: 1
0.91 0.08 0.00
Matches are distributed among these distances:
86 5 0.02
87 249 0.98
ACGTcount: A:0.27, C:0.16, G:0.26, T:0.32
Consensus pattern (87 bp):
GATTTGGCATCTCTGTATTGGCAGGGAGCAGATCGAAGACATAGCTGATTTGGCTTTCACGTGTT
TACGTTGAAGCAAATCTAAGAT
Found at i:26424510 original size:174 final size:171
Alignment explanation
Indices: 26424301--26424741 Score: 471
Period size: 174 Copynumber: 2.5 Consensus size: 171
26424291 AAAGATAATA
* *
26424301 GATTTGACATCTCTGTATTGGCAGAGAGCAGATCGAAGATAACAGATTTGGC-ATC-TTTGTATT
1 GATTTGA-ATCTCTGTATTGGCAGGGAGCAGATCGAAGATAACAGATTTGGCTATCACTTGT-TT
* * * *
26424364 GAC--AGAGAGTAGATCGAAGACAGCAGATTTGAC-TCTCTGTATTGGCAGGGAGCAGATCGAGG
64 -ACGTAGA-AGCAAATCGAAG--A--AGATTTGACGTATCTGTATTGGCAGGGAGCAGATCGAAG
*
26424426 ACATAACTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCTAAGAT
123 ACATAACTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCTAAAAT
* * * *
26424475 GATTTAGAATCTCTGTATTGACAGGGAGCAGATCGAAGACATAGCTGATTTGGCTTTCACTTGTT
1 GATTT-GAATCTCTGTATTGGCAGGGAGCAGATCGAAG--ATAACAGATTTGGCTATCACTTGTT
* * * *
26424540 TACGTTGAAGCAAATCTAAGATGATTTGGCGTATCTGTATTGGCAGGGAGCAGATCGAAGACATA
63 TACGTAGAAGCAAATCGAAGAAGATTTGACGTATCTGTATTGGCAGGGAGCAGATCGAAGACATA
* *
26424605 GCTGATTTGGTTTTCACGTGTTTACGTTGAAGCAAATCTAAAAT
128 ACTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCTAAAAT
** * * * *
26424649 GATTTGGCGTCTCTGTATTGGCAGGGAGCAGATCGAAGACATAGCAGATTTAGCTTTCACGTGTT
1 GATTT-GAATCTCTGTATTGGCAGGGAGCAGATCGAAG--ATAACAGATTTGGCTATCACTTGTT
* * *
26424714 TACGCT-GAAGCAGATCTAAGATGATTTG
63 TACG-TAGAAGCAAATCGAAGAAGATTTG
26424742 GCATCTCTGT
Statistics
Matches: 233, Mismatches: 25, Indels: 18
0.84 0.09 0.07
Matches are distributed among these distances:
173 7 0.03
174 189 0.81
175 4 0.02
176 14 0.06
177 13 0.06
178 6 0.03
ACGTcount: A:0.29, C:0.15, G:0.26, T:0.30
Consensus pattern (171 bp):
GATTTGAATCTCTGTATTGGCAGGGAGCAGATCGAAGATAACAGATTTGGCTATCACTTGTTTAC
GTAGAAGCAAATCGAAGAAGATTTGACGTATCTGTATTGGCAGGGAGCAGATCGAAGACATAACT
GATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCTAAAAT
Found at i:26424887 original size:78 final size:77
Alignment explanation
Indices: 26424780--26425151 Score: 505
Period size: 78 Copynumber: 4.8 Consensus size: 77
26424770 GAAGAAACAA
* * * * * *
26424780 ATTTGGCATCTCCATATTCGACGAAGAGCAGATCAAAGACACAGCAGATCTGATCTTCATTGAAG
1 ATTTGGCATCTCTATATTAGACG-GGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAAG
26424845 CAGATCCAAGATG
65 CAGATCCAAGATG
* * *
26424858 ATTTGGCATCTCTATATTAGACAGGGAGCAGATCGAAGAAATAACAGAT-TGGACCTTCATTAAA
1 ATTTGGCATCTCTATATTAGAC-GGGAGCAGATCGAAGACATAGCAGATCT-GACCTTCATTGAA
26424922 GCAGATCCAAGATG
64 GCAGATCCAAGATG
* * * *
26424936 ATTTGGCATCTTTGTATTAGACGAGGAGCAGATCGAAGACACAGCAGATCTGATCTTCATTGAAG
1 ATTTGGCATCTCTATATTAGACG-GGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAAG
26425001 CAGATCCAAGATG
65 CAGATCCAAGATG
* * *
26425014 ATTTGGCATCTCTATATTAGACGGGGAGCAGATTGAAGACATAACAAAT-TGGACCTTCATTGAA
1 ATTTGGCATCTCTATATTAGAC-GGGAGCAGATCGAAGACATAGCAGATCT-GACCTTCATTGAA
26425078 GCAGATCCAAGATG
64 GCAGATCCAAGATG
* *
26425092 ATTTGGCATCTCTGTATTAGACGGGGAGCAGATCAAAGACATAGCAGATCTGACCTTCAT
1 ATTTGGCATCTCTATATTAGAC-GGGAGCAGATCGAAGACATAGCAGATCTGACCTTCAT
26425152 GTGTTTACAT
Statistics
Matches: 259, Mismatches: 28, Indels: 14
0.86 0.09 0.05
Matches are distributed among these distances:
77 3 0.01
78 252 0.97
79 4 0.02
ACGTcount: A:0.34, C:0.19, G:0.23, T:0.25
Consensus pattern (77 bp):
ATTTGGCATCTCTATATTAGACGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAAGC
AGATCCAAGATG
Found at i:26425065 original size:156 final size:156
Alignment explanation
Indices: 26424780--26425151 Score: 618
Period size: 156 Copynumber: 2.4 Consensus size: 156
26424770 GAAGAAACAA
** * *
26424780 ATTTGGCATCTCCATATTCGACGAAGAGCAGATCAAAGACACAGCAGATCTGATCTTCATTGAAG
1 ATTTGGCATCTCTGTATTAGACGAGGAGCAGATCAAAGACACAGCAGATCTGATCTTCATTGAAG
*
26424845 CAGATCCAAGATGATTTGGCATCTCTATATTAGACAGGGAGCAGATCGAAGAAATAACAGATTGG
66 CAGATCCAAGATGATTTGGCATCTCTATATTAGACAGGGAGCAGATCGAAGAAATAACAAATTGG
26424910 ACCTTCATTAAAGCAGATCCAAGATG
131 ACCTTCATTAAAGCAGATCCAAGATG
* *
26424936 ATTTGGCATCTTTGTATTAGACGAGGAGCAGATCGAAGACACAGCAGATCTGATCTTCATTGAAG
1 ATTTGGCATCTCTGTATTAGACGAGGAGCAGATCAAAGACACAGCAGATCTGATCTTCATTGAAG
* * *
26425001 CAGATCCAAGATGATTTGGCATCTCTATATTAGACGGGGAGCAGATTGAAGACATAACAAATTGG
66 CAGATCCAAGATGATTTGGCATCTCTATATTAGACAGGGAGCAGATCGAAGAAATAACAAATTGG
*
26425066 ACCTTCATTGAAGCAGATCCAAGATG
131 ACCTTCATTAAAGCAGATCCAAGATG
* * *
26425092 ATTTGGCATCTCTGTATTAGACGGGGAGCAGATCAAAGACATAGCAGATCTGACCTTCAT
1 ATTTGGCATCTCTGTATTAGACGAGGAGCAGATCAAAGACACAGCAGATCTGATCTTCAT
26425152 GTGTTTACAT
Statistics
Matches: 200, Mismatches: 16, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
156 200 1.00
ACGTcount: A:0.34, C:0.19, G:0.23, T:0.25
Consensus pattern (156 bp):
ATTTGGCATCTCTGTATTAGACGAGGAGCAGATCAAAGACACAGCAGATCTGATCTTCATTGAAG
CAGATCCAAGATGATTTGGCATCTCTATATTAGACAGGGAGCAGATCGAAGAAATAACAAATTGG
ACCTTCATTAAAGCAGATCCAAGATG
Found at i:26425244 original size:45 final size:44
Alignment explanation
Indices: 26425175--26425293 Score: 157
Period size: 45 Copynumber: 2.7 Consensus size: 44
26425165 AGCAGATCCA
*
26425175 AGATGACAGATTTGGCATCTCTGTATTAGACGGAGAGCAAATTGG
1 AGATAACAGATTTGGCATCTCTGTATTAGACGGAGAGCAAATT-G
* *
26425220 AGATAACAGATTTGGCATCTCTGTATTAGACGGGGAGCAGATTG
1 AGATAACAGATTTGGCATCTCTGTATTAGACGGAGAGCAAATTG
* * * **
26425264 AAAAAATAGATTTGGTGTCTCTGTATTAGA
1 AGATAACAGATTTGGCATCTCTGTATTAGA
26425294 TGAGGAGCAG
Statistics
Matches: 66, Mismatches: 8, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
44 26 0.39
45 40 0.61
ACGTcount: A:0.32, C:0.12, G:0.27, T:0.29
Consensus pattern (44 bp):
AGATAACAGATTTGGCATCTCTGTATTAGACGGAGAGCAAATTG
Found at i:26425290 original size:44 final size:45
Alignment explanation
Indices: 26425180--26425305 Score: 164
Period size: 44 Copynumber: 2.8 Consensus size: 45
26425170 ATCCAAGATG
* * * *
26425180 ACAGATTTGGCATCTCTGTATTAGACGGAGAGCAAATTGGAGATA
1 ACAGATTTGGCATCTCTGTATTAGACGGGGAGCAGATTGGAAAAA
26425225 ACAGATTTGGCATCTCTGTATTAGACGGGGAGCAGATT-GAAAAA
1 ACAGATTTGGCATCTCTGTATTAGACGGGGAGCAGATTGGAAAAA
* ** * *
26425269 ATAGATTTGGTGTCTCTGTATTAGATGAGGAGCAGAT
1 ACAGATTTGGCATCTCTGTATTAGACGGGGAGCAGAT
26425306 CAAAAATAGC
Statistics
Matches: 72, Mismatches: 9, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
44 36 0.50
45 36 0.50
ACGTcount: A:0.32, C:0.12, G:0.28, T:0.29
Consensus pattern (45 bp):
ACAGATTTGGCATCTCTGTATTAGACGGGGAGCAGATTGGAAAAA
Found at i:26425697 original size:19 final size:19
Alignment explanation
Indices: 26425673--26425805 Score: 198
Period size: 19 Copynumber: 6.9 Consensus size: 19
26425663 ATAATCTTCA
26425673 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
26425692 ATGATATGATACAATCTTAGAT
1 ATGATATG---CAATCTTAGAT
26425714 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
*
26425732 GTGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
*
26425751 GTGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
*
26425770 ATGAT-TGCAATATTAGAT
1 ATGATATGCAATCTTAGAT
26425788 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
26425806 AGATATGATT
Statistics
Matches: 105, Mismatches: 4, Indels: 10
0.88 0.03 0.08
Matches are distributed among these distances:
18 32 0.30
19 55 0.52
21 2 0.02
22 16 0.15
ACGTcount: A:0.36, C:0.10, G:0.17, T:0.37
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:26425779 original size:37 final size:38
Alignment explanation
Indices: 26425673--26425812 Score: 198
Period size: 37 Copynumber: 3.7 Consensus size: 38
26425663 ATAATCTTCA
26425673 ATGATATGCAATCTTAGATATGATATGATACAATCTTAGAT
1 ATGATATGCAATCTTAGATATGATATG---CAATCTTAGAT
*
26425714 ATGAT-TGCAATCTTAGATGTGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGATATGATATGCAATCTTAGAT
* *
26425751 GTGATATGCAATCTTAGATATGAT-TGCAATATTAGAT
1 ATGATATGCAATCTTAGATATGATATGCAATCTTAGAT
26425788 ATGATATGCAATCTTAGA-A-GATATG
1 ATGATATGCAATCTTAGATATGATATG
26425813 ATTTTGTAAT
Statistics
Matches: 92, Mismatches: 5, Indels: 9
0.87 0.05 0.08
Matches are distributed among these distances:
35 3 0.03
36 3 0.03
37 44 0.48
38 17 0.18
40 20 0.22
41 5 0.05
ACGTcount: A:0.36, C:0.09, G:0.18, T:0.36
Consensus pattern (38 bp):
ATGATATGCAATCTTAGATATGATATGCAATCTTAGAT
Found at i:26425786 original size:56 final size:57
Alignment explanation
Indices: 26425673--26425813 Score: 216
Period size: 56 Copynumber: 2.5 Consensus size: 57
26425663 ATAATCTTCA
*
26425673 ATGATATGCAATCTTAGATATGATATGATACAATCTTAGATATGATTGCAATCTTAGAT
1 ATGATATGCAATCTTAGATATGATATG--ACAATCTTAGATATGATTGCAATATTAGAT
* *
26425732 GTGATATGCAATCTTAGATGTGATATG-CAATCTTAGATATGATTGCAATATTAGAT
1 ATGATATGCAATCTTAGATATGATATGACAATCTTAGATATGATTGCAATATTAGAT
26425788 ATGATATGCAATCTTAGA-A-GATATGA
1 ATGATATGCAATCTTAGATATGATATGA
26425814 TTTTGTAATC
Statistics
Matches: 76, Mismatches: 5, Indels: 6
0.87 0.06 0.07
Matches are distributed among these distances:
54 6 0.08
56 45 0.59
59 25 0.33
ACGTcount: A:0.37, C:0.09, G:0.18, T:0.36
Consensus pattern (57 bp):
ATGATATGCAATCTTAGATATGATATGACAATCTTAGATATGATTGCAATATTAGAT
Found at i:26425831 original size:22 final size:22
Alignment explanation
Indices: 26425673--26425828 Score: 107
Period size: 19 Copynumber: 7.8 Consensus size: 22
26425663 ATAATCTTCA
26425673 ATGATATGCAATCTTAGATATGAT
1 ATGATATGCAATCTTAGA-A-GAT
26425697 ATGATA--CAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
26425714 ATGAT-TGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
*
26425732 GTGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
*
26425751 GTGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
*
26425770 ATGAT-TGCAATATT---AGAT
1 ATGATATGCAATCTTAGAAGAT
26425788 ATGATATGCAATCTTAGAAGAT
1 ATGATATGCAATCTTAGAAGAT
* *
26425810 ATGATTTTGTAATCTTAGA
1 ATGA-TATGCAATCTTAGA
26425829 GATTTAATTT
Statistics
Matches: 118, Mismatches: 6, Indels: 17
0.84 0.04 0.12
Matches are distributed among these distances:
17 8 0.07
18 33 0.28
19 44 0.37
22 15 0.13
23 12 0.10
24 6 0.05
ACGTcount: A:0.36, C:0.09, G:0.17, T:0.38
Consensus pattern (22 bp):
ATGATATGCAATCTTAGAAGAT
Found at i:26427633 original size:11 final size:12
Alignment explanation
Indices: 26427604--26427632 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
26427594 GGAAAAAAAA
26427604 TAAAAACCTAAT
1 TAAAAACCTAAT
26427616 TAAAAACCTAAT
1 TAAAAACCTAAT
26427628 TAAAA
1 TAAAA
26427633 CTAACTAACT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.62, C:0.14, G:0.00, T:0.24
Consensus pattern (12 bp):
TAAAAACCTAAT
Found at i:26430769 original size:17 final size:17
Alignment explanation
Indices: 26430749--26430784 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
26430739 ACTCATCAAC
*
26430749 TCATTTTTTTCATTCTT
1 TCATTTTCTTCATTCTT
*
26430766 TCATTTTCTTCTTTCTT
1 TCATTTTCTTCATTCTT
26430783 TC
1 TC
26430785 CATGCTTAGC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.08, C:0.22, G:0.00, T:0.69
Consensus pattern (17 bp):
TCATTTTCTTCATTCTT
Found at i:26434409 original size:46 final size:46
Alignment explanation
Indices: 26434261--26434435 Score: 162
Period size: 47 Copynumber: 3.8 Consensus size: 46
26434251 TGGGTAAGGT
* * * * *
26434261 GCCGATGCCATGTCCCAGATACGGTCTTACACTGGCTCACATCTCAA
1 GCCGATGCCATGTCCCAGACA-TGTCTTACACTAGCTTACATCTCGA
* *
26434308 GTCGATGCCATGTCCCAGACATGGTCTTACACT-GAC-TATCATCTAGTA
1 GCCGATGCCATGTCCCAGACAT-GTCTTACACTAG-CTTA-CATCTCG-A
* *
26434356 GCTGATG-CATGTCCCAGACATGTCTTACACTAGCTTACGTCTCGA
1 GCCGATGCCATGTCCCAGACATGTCTTACACTAGCTTACATCTCGA
*
26434401 GGCCGATG-CATGTCCC-GAACATGTCTTACCCTAGC
1 -GCCGATGCCATGTCCCAG-ACATGTCTTACACTAGC
26434436 ACTTGTCTCA
Statistics
Matches: 108, Mismatches: 12, Indels: 17
0.79 0.09 0.12
Matches are distributed among these distances:
45 2 0.02
46 48 0.44
47 52 0.48
48 6 0.06
ACGTcount: A:0.23, C:0.31, G:0.20, T:0.26
Consensus pattern (46 bp):
GCCGATGCCATGTCCCAGACATGTCTTACACTAGCTTACATCTCGA
Found at i:26434444 original size:46 final size:45
Alignment explanation
Indices: 26434261--26434455 Score: 132
Period size: 46 Copynumber: 4.2 Consensus size: 45
26434251 TGGGTAAGGT
* * * * *
26434261 GCCGATGCCATGTCCCAGATACGGTCTTACACTGGCTCACATCTCAA-
1 GCCGATG-CATGTCCCAGACA-TGTCTTACACTAGCTTA-GTCTCAAG
* *
26434308 GTCGATGCCATGTCCCAGACATGGTCTTACACT-GAC-TA-TCATCTAG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAG-CTTAGTC-TCAAG
* *
26434354 TAGCTGATGCATGTCCCAGACATGTCTTACACTAGCTTACGTCTCGAG
1 --GCCGATGCATGTCCCAGACATGTCTTACACTAGCTTA-GTCTCAAG
* *
26434402 GCCGATGCATGTCCC-GAACATGTCTTACCCTAGCACTT-GTCTCAAT
1 GCCGATGCATGTCCCAG-ACATGTCTTACACTAG--CTTAGTCTCAAG
26434448 GCCGATGC
1 GCCGATGC
26434456 TTACACTGGC
Statistics
Matches: 123, Mismatches: 12, Indels: 27
0.76 0.07 0.17
Matches are distributed among these distances:
44 2 0.02
45 4 0.03
46 56 0.46
47 47 0.38
48 12 0.10
49 2 0.02
ACGTcount: A:0.23, C:0.31, G:0.20, T:0.27
Consensus pattern (45 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTAGCTTAGTCTCAAG
Found at i:26443972 original size:47 final size:45
Alignment explanation
Indices: 26443899--26444172 Score: 219
Period size: 47 Copynumber: 5.9 Consensus size: 45
26443889 TGGGTAAGGT
*
26443899 GCCGATGCTATGTCCCAGACACGGTCTTACACTAGCTCACATCTCAA
1 GCCGATGC-ATGTCCCAGACA-TGTCTTACACTAGCTCACATCTCAA
** *
26443946 ATCGATGCCATGTCCCAGACATGGTCTTACACTAACT-ATCATCT-AGTA
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCA-CATCTCA--A
* * * *
26443994 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTTACGTCTCGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCACATCTC-AA
* * ** ***
26444040 GCCGATGCATGTCCCGGACATGTCTTACCCTAGAACTTGTCTCAA
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCACATCTCAA
* * * * ***
26444085 TGCCGATGGCATGTCCCAGACATGGTCTTAAACTGGCTCTCATAATGTG
1 -GCCGAT-GCATGTCCCAGACAT-GTCTTACACTAGCTCACAT-CTCAA
*
26444134 GCCGATGCATGTCCCAGACATGTCTTACACTAGCCCACA
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCACA
26444173 CACAAATGAC
Statistics
Matches: 180, Mismatches: 35, Indels: 25
0.75 0.15 0.10
Matches are distributed among these distances:
45 1 0.01
46 73 0.41
47 79 0.44
48 26 0.14
49 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.26
Consensus pattern (45 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCACATCTCAA
Found at i:26444147 original size:94 final size:92
Alignment explanation
Indices: 26443898--26444166 Score: 253
Period size: 94 Copynumber: 2.9 Consensus size: 92
26443888 ATGGGTAAGG
* * * * * ***
26443898 TGCCGATGCTATGTCCCAGACACGGTCTTACACTAGCTCACATCTC-AAATCGATGCCATGTCCC
1 TGCCGATGC-ATGTCCCAGACA-TGTCTTAAACTGGCTTACATATCGAGGCCGATG-CATGTCCC
* *
26443962 AGACATGGTCTTACACT--AAC-TATCATCTAG
63 AGACAT-GTCTTACACTAGAACTTGTC-TC-AA
* * * *
26443992 TAGCCGATGCATGTCCCAGACATGTCTTACACTGGCTTACGTCTCGAGGCCGATGCATGTCCCGG
1 T-GCCGATGCATGTCCCAGACATGTCTTAAACTGGCTTACATATCGAGGCCGATGCATGTCCCAG
*
26444057 ACATGTCTTACCCTAGAACTTGTCTCAA
65 ACATGTCTTACACTAGAACTTGTCTCAA
*
26444085 TGCCGATGGCATGTCCCAGACATGGTCTTAAACTGGCTCT-CATAAT-GTGGCCGATGCATGTCC
1 TGCCGAT-GCATGTCCCAGACAT-GTCTTAAACTGGCT-TACAT-ATCGAGGCCGATGCATGTCC
26444148 CAGACATGTCTTACACTAG
62 CAGACATGTCTTACACTAG
26444167 CCCACACACA
Statistics
Matches: 149, Mismatches: 17, Indels: 18
0.81 0.09 0.10
Matches are distributed among these distances:
92 15 0.10
93 49 0.33
94 72 0.48
95 13 0.09
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (92 bp):
TGCCGATGCATGTCCCAGACATGTCTTAAACTGGCTTACATATCGAGGCCGATGCATGTCCCAGA
CATGTCTTACACTAGAACTTGTCTCAA
Found at i:26447447 original size:40 final size:40
Alignment explanation
Indices: 26447392--26447647 Score: 351
Period size: 40 Copynumber: 6.5 Consensus size: 40
26447382 CGGATGATAA
* * *
26447392 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
26447432 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
26447472 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
26447512 CCGGGCTAAGTCCCGAAGGCATTTGTGAGCG-TACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
26447551 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
26447591 CCGGGCTATGTCCCGAAGGCA-TTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
26447630 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
26447648 TACTTGGCTT
Statistics
Matches: 195, Mismatches: 18, Indels: 8
0.88 0.08 0.04
Matches are distributed among these distances:
38 15 0.08
39 50 0.26
40 130 0.67
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:26447579 original size:79 final size:79
Alignment explanation
Indices: 26447392--26447647 Score: 354
Period size: 79 Copynumber: 3.2 Consensus size: 79
26447382 CGGATGATAA
* * * **
26447392 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGTTCCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACATCCGGGCTAAGTCCCGAAGGCATTTG
26447457 TGCGAGTTACTATAT
66 TGCGAG-TACTATAT
*
26447472 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACATCCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACATCCGGGCTAAGTCCCGAAGGCATTTG
* *
26447537 TGAGCGTACTATAT
66 TGCGAGTACTATAT
* * *
26447551 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATATCCGGGCTATGTCCCGAAGGCA-TTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACATCCGGGCTAAGTCCCGAAGGCATTTG
*
26447615 AGCGAGTAGCTATAT
66 TGCGAGTA-CTATAT
* *
26447630 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
26447648 TACTTGGCTT
Statistics
Matches: 158, Mismatches: 17, Indels: 4
0.88 0.09 0.02
Matches are distributed among these distances:
78 22 0.14
79 73 0.46
80 63 0.40
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.25
Consensus pattern (79 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACATCCGGGCTAAGTCCCGAAGGCATTTG
TGCGAGTACTATAT
Found at i:26447604 original size:119 final size:118
Alignment explanation
Indices: 26447392--26447621 Score: 365
Period size: 119 Copynumber: 1.9 Consensus size: 118
26447382 CGGATGATAA
* *
26447392 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGTTCCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGCGC-AGCGACTAGTTCCGGGCTAAGTCCCGAAGGCATTGG
*
26447457 TGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
65 TGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCA-TTGAGCGAGTTATTACAT
*
26447512 CCGGGCTAAGTCCCGAAGGCATTTGTG-AGCGTACTA-TATCCGGGCTAAGTCCCGAAGGCATTG
1 CCGGGCTAAGTCCCGAAGGCATTTGCGCAGCG-ACTAGT-TCCGGGCTAAGTCCCGAAGGCATTG
*
26447575 GTGCGAGTTACTATATCCGGGCTATGTCCCGAAGGCATTGAGCGAGT
64 GTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTGAGCGAGT
26447622 AGCTATATCC
Statistics
Matches: 103, Mismatches: 5, Indels: 6
0.90 0.04 0.05
Matches are distributed among these distances:
118 13 0.13
119 64 0.62
120 26 0.25
ACGTcount: A:0.22, C:0.23, G:0.30, T:0.25
Consensus pattern (118 bp):
CCGGGCTAAGTCCCGAAGGCATTTGCGCAGCGACTAGTTCCGGGCTAAGTCCCGAAGGCATTGGT
GCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTGAGCGAGTTATTACAT
Found at i:26455571 original size:40 final size:40
Alignment explanation
Indices: 26455516--26455758 Score: 366
Period size: 40 Copynumber: 6.1 Consensus size: 40
26455506 TGGATGATAA
* * *
26455516 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
26455556 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
26455596 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
26455636 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
26455676 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
26455716 CCGGGCTATGTCCCGAAGGCA-TTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
26455755 CCGG
1 CCGG
26455759 TTAAATCCCT
Statistics
Matches: 188, Mismatches: 13, Indels: 5
0.91 0.06 0.02
Matches are distributed among these distances:
38 2 0.01
39 18 0.10
40 168 0.89
ACGTcount: A:0.22, C:0.24, G:0.29, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:26459457 original size:40 final size:40
Alignment explanation
Indices: 26459391--26459557 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
26459381 AAATTGAATG
* * *
26459391 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
26459430 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
26459470 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
26459510 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
26459550 ATATCCGG
1 ATATCCGG
26459558 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:26467526 original size:40 final size:39
Alignment explanation
Indices: 26467431--26467558 Score: 150
Period size: 40 Copynumber: 3.2 Consensus size: 39
26467421 TGCTGGAAAT
* * * *
26467431 TATATCCGGGTTAAGACCCGAAGGCAATGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGAC
* *
26467470 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTAT
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTGAC
* *
26467510 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGCGA-GTGAC
26467550 TATATCCGG
1 TATATCCGG
26467559 TTATATTCCG
Statistics
Matches: 77, Mismatches: 9, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
39 27 0.35
40 48 0.62
41 2 0.03
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGAC
Found at i:26480193 original size:23 final size:23
Alignment explanation
Indices: 26480167--26480212 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
26480157 AACCCCTAAT
26480167 ATGCATAATTGAATG-ATTTATTA
1 ATGCATAA-TGAATGCATTTATTA
* *
26480190 ATGCATGATGATTGCATTTATTA
1 ATGCATAATGAATGCATTTATTA
26480213 TTAGCATGAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 5 0.25
23 15 0.75
ACGTcount: A:0.35, C:0.07, G:0.15, T:0.43
Consensus pattern (23 bp):
ATGCATAATGAATGCATTTATTA
Found at i:26486174 original size:3 final size:3
Alignment explanation
Indices: 26486160--26486190 Score: 55
Period size: 3 Copynumber: 10.7 Consensus size: 3
26486150 ATTAGAAATA
26486160 ATT ATT -TT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
26486191 ACGGCCTATG
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
2 2 0.07
3 25 0.93
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
ATT
Found at i:26487041 original size:43 final size:42
Alignment explanation
Indices: 26486987--26487089 Score: 134
Period size: 42 Copynumber: 2.4 Consensus size: 42
26486977 ATCCGAGCTC
* *
26486987 GTTGAGCGGTCCGAGTTCGTGATATATGTGAGAATCCAAACTT
1 GTTGAGAGGTCCGAGTTCGAGATATATGTG-GAATCCAAACTT
* * * * *
26487030 GTTGAGTGGTCCAAGTTTGAGATCTATGTGGAATCCAAGCTT
1 GTTGAGAGGTCCGAGTTCGAGATATATGTGGAATCCAAACTT
26487072 GTTGAGAGGTCCGAGTTC
1 GTTGAGAGGTCCGAGTTC
26487090 ATAATGGATG
Statistics
Matches: 51, Mismatches: 9, Indels: 1
0.84 0.15 0.02
Matches are distributed among these distances:
42 26 0.51
43 25 0.49
ACGTcount: A:0.23, C:0.16, G:0.30, T:0.31
Consensus pattern (42 bp):
GTTGAGAGGTCCGAGTTCGAGATATATGTGGAATCCAAACTT
Found at i:26487077 original size:42 final size:43
Alignment explanation
Indices: 26486976--26487089 Score: 140
Period size: 43 Copynumber: 2.7 Consensus size: 43
26486966 GGAATTTAGA
* * * *
26486976 AATCCGAGCTCGTTGAGCGGTCCGAGTTCGTGATATATGTGAG
1 AATCCAAGCTTGTTGAGAGGTCCGAGTTCGAGATATATGTGAG
* * * * *
26487019 AATCCAAACTTGTTGAGTGGTCCAAGTTTGAGATCTATGTG-G
1 AATCCAAGCTTGTTGAGAGGTCCGAGTTCGAGATATATGTGAG
26487061 AATCCAAGCTTGTTGAGAGGTCCGAGTTC
1 AATCCAAGCTTGTTGAGAGGTCCGAGTTC
26487090 ATAATGGATG
Statistics
Matches: 59, Mismatches: 12, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
42 26 0.44
43 33 0.56
ACGTcount: A:0.24, C:0.18, G:0.29, T:0.30
Consensus pattern (43 bp):
AATCCAAGCTTGTTGAGAGGTCCGAGTTCGAGATATATGTGAG
Done.