Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr02 99090824
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 99090824
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 317 characters in sequence are not A, C, G, or T
File 89 of 318
Found at i:26834037 original size:26 final size:26
Alignment explanation
Indices: 26834007--26834088 Score: 155
Period size: 26 Copynumber: 3.2 Consensus size: 26
26833997 TAAAATTCCC
26834007 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
26834033 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
26834059 ATTATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
26834085 ATCA
1 ATCA
26834089 ATTTGTATCA
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 54 1.00
ACGTcount: A:0.35, C:0.26, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:26844851 original size:25 final size:27
Alignment explanation
Indices: 26844814--26844866 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
26844804 TCAAACATGC
26844814 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
* *
26844840 ATTTCGGT-AATTTATCTCCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
26844866 A
1 A
26844867 AAACTGTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.25, C:0.15, G:0.23, T:0.38
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACTCCTAGGGGT
Found at i:26846381 original size:32 final size:32
Alignment explanation
Indices: 26846344--26846440 Score: 185
Period size: 32 Copynumber: 3.0 Consensus size: 32
26846334 AATGCTTATC
26846344 ATGCCCATCATCCATTAACTATTAAAATGCTA
1 ATGCCCATCATCCATTAACTATTAAAATGCTA
*
26846376 ATGCCCATCATTCATTAACTATTAAAATGCTA
1 ATGCCCATCATCCATTAACTATTAAAATGCTA
26846408 ATGCCCATCATCCATTAACTATTAAAATGCTA
1 ATGCCCATCATCCATTAACTATTAAAATGCTA
26846440 A
1 A
26846441 AATGCATACA
Statistics
Matches: 63, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 63 1.00
ACGTcount: A:0.38, C:0.24, G:0.06, T:0.32
Consensus pattern (32 bp):
ATGCCCATCATCCATTAACTATTAAAATGCTA
Found at i:26851287 original size:12 final size:12
Alignment explanation
Indices: 26851270--26851300 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
26851260 AGTACTACCT
26851270 CGGCCTCGACCA
1 CGGCCTCGACCA
26851282 CGGCCTCGACCA
1 CGGCCTCGACCA
26851294 CGGCCTC
1 CGGCCTC
26851301 TTCCCCGAGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.13, C:0.52, G:0.26, T:0.10
Consensus pattern (12 bp):
CGGCCTCGACCA
Found at i:26852937 original size:25 final size:27
Alignment explanation
Indices: 26852900--26852952 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
26852890 TCAAACATGC
26852900 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
* *
26852926 ATTTCGGT-AATTTATCTCCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
26852952 A
1 A
26852953 AAACTGTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.25, C:0.15, G:0.23, T:0.38
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACTCCTAGGGGT
Found at i:26854467 original size:32 final size:32
Alignment explanation
Indices: 26854430--26854526 Score: 185
Period size: 32 Copynumber: 3.0 Consensus size: 32
26854420 AATGCTTATC
26854430 ATGCCCATCATCCATTAACTATTAAAATGCTA
1 ATGCCCATCATCCATTAACTATTAAAATGCTA
*
26854462 ATGCCCATCATTCATTAACTATTAAAATGCTA
1 ATGCCCATCATCCATTAACTATTAAAATGCTA
26854494 ATGCCCATCATCCATTAACTATTAAAATGCTA
1 ATGCCCATCATCCATTAACTATTAAAATGCTA
26854526 A
1 A
26854527 AATGCATACA
Statistics
Matches: 63, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 63 1.00
ACGTcount: A:0.38, C:0.24, G:0.06, T:0.32
Consensus pattern (32 bp):
ATGCCCATCATCCATTAACTATTAAAATGCTA
Found at i:26867757 original size:39 final size:38
Alignment explanation
Indices: 26867675--26867774 Score: 121
Period size: 39 Copynumber: 2.6 Consensus size: 38
26867665 GAAATCCTTG
* *
26867675 TTATAATTATTGTAATTATAATTTAGGATCAAATATTA
1 TTATAATTATTCTAATTATAATTTAGGATCAAACATTA
* *
26867713 TTATAATTATTCTAATTGTAATTTTTTGG-TCAAACATTA
1 TTATAATTATTCTAATTATAA--TTTAGGATCAAACATTA
**
26867752 TTATAATTATGGTAATTATAATT
1 TTATAATTATTCTAATTATAATT
26867775 ATTATATTCA
Statistics
Matches: 53, Mismatches: 7, Indels: 5
0.82 0.11 0.08
Matches are distributed among these distances:
37 2 0.04
38 19 0.36
39 27 0.51
40 5 0.09
ACGTcount: A:0.38, C:0.04, G:0.08, T:0.50
Consensus pattern (38 bp):
TTATAATTATTCTAATTATAATTTAGGATCAAACATTA
Found at i:26874440 original size:34 final size:30
Alignment explanation
Indices: 26874404--26874466 Score: 119
Period size: 30 Copynumber: 2.1 Consensus size: 30
26874394 CATAGAAAAT
26874404 TTAATTTAAATAATA-TTTTTTATTTATAC
1 TTAATTTAAATAATATTTTTTTATTTATAC
26874433 TTAATTTAAATAATATTTTTTTATTTATAC
1 TTAATTTAAATAATATTTTTTTATTTATAC
26874463 TTAA
1 TTAA
26874467 AAGTATATAG
Statistics
Matches: 33, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
29 15 0.45
30 18 0.55
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.59
Consensus pattern (30 bp):
TTAATTTAAATAATATTTTTTTATTTATAC
Found at i:26874850 original size:13 final size:13
Alignment explanation
Indices: 26874834--26874860 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
26874824 TAATTAAAGG
26874834 GTTAAAATTTAAA
1 GTTAAAATTTAAA
26874847 GTTAAAATTTAAA
1 GTTAAAATTTAAA
26874860 G
1 G
26874861 ATGATAATCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.52, C:0.00, G:0.11, T:0.37
Consensus pattern (13 bp):
GTTAAAATTTAAA
Found at i:26874927 original size:9 final size:9
Alignment explanation
Indices: 26874913--26874989 Score: 77
Period size: 9 Copynumber: 8.6 Consensus size: 9
26874903 AACTTTGGAT
26874913 CATAACTTA
1 CATAACTTA
26874922 CATAACTTA
1 CATAACTTA
*
26874931 TATAACTTA
1 CATAACTTA
26874940 CATAACTTA
1 CATAACTTA
26874949 CATAA--TA
1 CATAACTTA
*
26874956 CATAAATATA
1 CATAACT-TA
* * *
26874966 TATATCATA
1 CATAACTTA
26874975 TCATAACTTA
1 -CATAACTTA
26874985 CATAA
1 CATAA
26874990 AACTTTGGAT
Statistics
Matches: 55, Mismatches: 9, Indels: 8
0.76 0.12 0.11
Matches are distributed among these distances:
7 7 0.13
9 37 0.67
10 11 0.20
ACGTcount: A:0.48, C:0.17, G:0.00, T:0.35
Consensus pattern (9 bp):
CATAACTTA
Found at i:26891277 original size:15 final size:15
Alignment explanation
Indices: 26891244--26891277 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
26891234 GTAAATTCTT
* *
26891244 CTTTTTTTTTTTTTT
1 CTTTTTTTTTATTTA
26891259 CTTTTTTTTTATTTA
1 CTTTTTTTTTATTTA
26891274 CTTT
1 CTTT
26891278 GATGTAAATA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.06, C:0.09, G:0.00, T:0.85
Consensus pattern (15 bp):
CTTTTTTTTTATTTA
Found at i:26897118 original size:26 final size:26
Alignment explanation
Indices: 26897082--26897188 Score: 169
Period size: 26 Copynumber: 4.1 Consensus size: 26
26897072 CATGAAATTC
*
26897082 TTATCATGAAATATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
26897108 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
26897134 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
* *
26897160 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
26897186 TTA
1 TTA
26897189 CCAATTTGTA
Statistics
Matches: 78, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 78 1.00
ACGTcount: A:0.36, C:0.23, G:0.06, T:0.35
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:26904334 original size:27 final size:27
Alignment explanation
Indices: 26904294--26904434 Score: 164
Period size: 27 Copynumber: 5.2 Consensus size: 27
26904284 AGGAAGCGTC
*
26904294 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
26904321 CTGGTGGCTCTGCCAC-ATATATCTG-T
1 CTGGTGGCTCTGCCACAAT-TATCTGAT
* *
26904347 CCTAGTGGCTATGCCACAATTATCTGAT
1 -CTGGTGGCTCTGCCACAATTATCTGAT
*
26904375 CTGGTGGCTCTGCCAC-ATATATCTGTT
1 CTGGTGGCTCTGCCACAAT-TATCTGAT
* *
26904402 CTAGTGGCTCTGCTACAA-TATCTGTAT
1 CTGGTGGCTCTGCCACAATTATCTG-AT
26904429 CTGGTG
1 CTGGTG
26904435 ACTTCGTCAC
Statistics
Matches: 97, Mismatches: 10, Indels: 14
0.80 0.08 0.12
Matches are distributed among these distances:
26 11 0.11
27 82 0.85
28 4 0.04
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.35
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGAT
Found at i:26904373 original size:54 final size:54
Alignment explanation
Indices: 26904291--26904434 Score: 236
Period size: 54 Copynumber: 2.7 Consensus size: 54
26904281 TGGAGGAAGC
*
26904291 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
1 GTCCTAGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
26904345 GTCCTAGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
1 GTCCTAGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
* * *
26904399 GTTCTAGTGGCTCTGCTACAA-TATCTGTATCTGGTG
1 GTCCTAGTGGCTATGCCACAATTATCTG-ATCTGGTG
26904435 ACTTCGTCAC
Statistics
Matches: 85, Mismatches: 4, Indels: 2
0.93 0.04 0.02
Matches are distributed among these distances:
53 6 0.07
54 79 0.93
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.35
Consensus pattern (54 bp):
GTCCTAGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
Found at i:26904446 original size:81 final size:80
Alignment explanation
Indices: 26904294--26904452 Score: 189
Period size: 81 Copynumber: 2.0 Consensus size: 80
26904284 AGGAAGCGTC
* *
26904294 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTCCTAGTGGCTAT
1 CTGGTGGCTATGCCACAATTATCTGATCTAGTGGCTCTGCCACATATATCTGTCCTAGTGACTAT
26904359 GCCACAATTATCTGAT
66 GCCACAA-TATCTGAT
* * * * *
26904375 CTGGTGGCTCTGCCAC-ATATATCTGTTCTAGTGGCTCTGCTACA-ATATCTGTATCTGGTGACT
1 CTGGTGGCTATGCCACAAT-TATCTGATCTAGTGGCTCTGCCACATATATCTGT-CCTAGTGACT
*
26904438 -TCGTCACAATATCTG
64 AT-GCCACAATATCTG
26904453 GCAGCCTCAC
Statistics
Matches: 67, Mismatches: 8, Indels: 7
0.82 0.10 0.09
Matches are distributed among these distances:
80 17 0.25
81 50 0.75
ACGTcount: A:0.20, C:0.25, G:0.21, T:0.35
Consensus pattern (80 bp):
CTGGTGGCTATGCCACAATTATCTGATCTAGTGGCTCTGCCACATATATCTGTCCTAGTGACTAT
GCCACAATATCTGAT
Found at i:26907253 original size:30 final size:30
Alignment explanation
Indices: 26907217--26907317 Score: 118
Period size: 28 Copynumber: 3.5 Consensus size: 30
26907207 GACAAGATTG
* * *
26907217 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
26907247 GCACTAAGTGTGCGAGTTT--GATTCTATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
26907275 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
26907304 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
26907318 GATTCACTAT
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
28 23 0.38
29 19 0.31
30 19 0.31
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.29
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGTTTAAAATTATATA
Found at i:26907329 original size:29 final size:28
Alignment explanation
Indices: 26907246--26907321 Score: 75
Period size: 29 Copynumber: 2.7 Consensus size: 28
26907236 AAAATTGTAC
* *
26907246 AGCACTAAGTGTGCGAGTTTGAT-TCTAT
1 AGCACTAAGTGTGCG-GATTGATATATAT
* *
26907274 AGCACTAAGTGTGC-GAGCTGAAAATATAT
1 AGCACTAAGTGTGCGGA-TTG-ATATATAT
26907303 AGCACTAAGTGTGCGGATT
1 AGCACTAAGTGTGCGGATT
26907322 CACTATATGC
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
26 1 0.03
27 2 0.05
28 15 0.38
29 19 0.49
30 2 0.05
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGGATTGATATATAT
Found at i:26917841 original size:80 final size:80
Alignment explanation
Indices: 26917757--26917905 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
26917747 TATGGTAACC
* * * *
26917757 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
26917821 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
26917837 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
26917902 CCGG
66 CCGG
26917906 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:26917847 original size:40 final size:38
Alignment explanation
Indices: 26917798--26917905 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
26917788 ATCACGATTT
*
26917798 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
26917838 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
26917878 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
26917906 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:26921575 original size:29 final size:28
Alignment explanation
Indices: 26921488--26921588 Score: 87
Period size: 29 Copynumber: 3.5 Consensus size: 28
26921478 ACTCAATCAT
* *
26921488 GCACACTTAGTGCCACGT-GATTCAAGCCC
1 GCACACTTAGTG-C-CGTACATTCAAGCTC
* * * * *
26921517 GCACACATAGTGCCATATAGTCCAAACTC
1 GCACACTTAGTGCCGTACA-TTCAAGCTC
26921546 GCACACTTAGTGCCGTACATTACAAGCTC
1 GCACACTTAGTGCCGTACATT-CAAGCTC
*
26921575 GCACACTCAGTGCC
1 GCACACTTAGTGCC
26921589 AATCTCGTCA
Statistics
Matches: 57, Mismatches: 12, Indels: 6
0.76 0.16 0.08
Matches are distributed among these distances:
27 2 0.04
28 3 0.05
29 52 0.91
ACGTcount: A:0.28, C:0.34, G:0.18, T:0.21
Consensus pattern (28 bp):
GCACACTTAGTGCCGTACATTCAAGCTC
Found at i:26934174 original size:13 final size:13
Alignment explanation
Indices: 26934158--26934182 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
26934148 ATAAAAGTAA
26934158 AAAAAAATAAAAC
1 AAAAAAATAAAAC
26934171 AAAAAAATAAAA
1 AAAAAAATAAAA
26934183 TTTTTTTACC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.88, C:0.04, G:0.00, T:0.08
Consensus pattern (13 bp):
AAAAAAATAAAAC
Found at i:26934175 original size:16 final size:16
Alignment explanation
Indices: 26934141--26934177 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
26934131 AGACATAGAT
**
26934141 AAAAAAAATAAAAGTA
1 AAAAAAAATAAAACAA
26934157 AAAAAAAATAAAACAA
1 AAAAAAAATAAAACAA
26934173 AAAAA
1 AAAAA
26934178 TAAAATTTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.86, C:0.03, G:0.03, T:0.08
Consensus pattern (16 bp):
AAAAAAAATAAAACAA
Found at i:26934449 original size:2 final size:2
Alignment explanation
Indices: 26934442--26934483 Score: 59
Period size: 2 Copynumber: 21.0 Consensus size: 2
26934432 TTTATATGTG
*
26934442 TA TA TA TA TA TA TA TA TA TA TA TA TA TGA -A TA TA TT TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T-A TA TA TA TA TA TA TA
26934484 GTACTATTAA
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
1 1 0.03
2 34 0.94
3 1 0.03
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (2 bp):
TA
Found at i:26934548 original size:24 final size:24
Alignment explanation
Indices: 26934498--26934718 Score: 144
Period size: 23 Copynumber: 9.3 Consensus size: 24
26934488 TATTAATGGT
26934498 TATTTTTAATAT-TATTAT-TAT-
1 TATTTTTAATATATATTATGTATG
* *
26934519 CATTTTGAATATATA-TATTGTATG
1 TATTTTTAATATATATTA-TGTATG
* *
26934543 TGTTTTTCATATATATTATGTATG
1 TATTTTTAATATATATTATGTATG
*
26934567 TATTTTTAATAT-TATTAAT-TATA
1 TATTTTTAATATATATT-ATGTATG
*
26934590 TATTTTT-ATATATATTATGTATA
1 TATTTTTAATATATATTATGTATG
* *
26934613 TATTTTTAAATATCATACTAT-TCATA
1 TATTTTT-AATAT-ATATTATGT-ATG
* *
26934639 TATTTTT-ATGT-TATCTGATGTATA
1 TATTTTTAATATATAT-T-ATGTATG
*
26934663 TATTTTTAATAT-TATTA-GTTATA
1 TATTTTTAATATATATTATG-TATG
* *
26934686 TATTTTTTATACTAT-TTCATGTATA
1 TATTTTTAATA-TATATT-ATGTATG
26934711 TATTTTTA
1 TATTTTTA
26934719 TATTATCCTT
Statistics
Matches: 164, Mismatches: 15, Indels: 38
0.76 0.07 0.18
Matches are distributed among these distances:
21 12 0.07
22 12 0.07
23 48 0.29
24 48 0.29
25 27 0.16
26 17 0.10
ACGTcount: A:0.32, C:0.04, G:0.05, T:0.59
Consensus pattern (24 bp):
TATTTTTAATATATATTATGTATG
Found at i:26934903 original size:24 final size:23
Alignment explanation
Indices: 26934850--26934906 Score: 62
Period size: 24 Copynumber: 2.4 Consensus size: 23
26934840 TTCTAATATG
*
26934850 TATATATTATGTAGATATTTTAA
1 TATATATTATATAGATATTTTAA
*
26934873 TATTATATTATATATGCAT-TTTTTA
1 TA-TATATTATATA-G-ATATTTTAA
26934898 TATATATTA
1 TATATATTA
26934907 CGTATATATA
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
23 2 0.07
24 17 0.59
25 8 0.28
26 2 0.07
ACGTcount: A:0.37, C:0.02, G:0.05, T:0.56
Consensus pattern (23 bp):
TATATATTATATAGATATTTTAA
Found at i:26934956 original size:23 final size:24
Alignment explanation
Indices: 26934930--26935005 Score: 72
Period size: 21 Copynumber: 3.3 Consensus size: 24
26934920 TTTAATATTG
26934930 TATTTTTATATA-TATCATGTATA
1 TATTTTTATATACTATCATGTATA
*
26934953 TATTTTGA-ATACTAT-AT-TATA
1 TATTTTTATATACTATCATGTATA
* *
26934974 TATTTTT-TACATTATCTTATGTATA
1 TATTTTTATATACTATC--ATGTATA
26934999 TATTTTT
1 TATTTTT
26935006 TAATAACTAT
Statistics
Matches: 43, Mismatches: 4, Indels: 10
0.75 0.07 0.18
Matches are distributed among these distances:
21 15 0.35
22 5 0.12
23 10 0.23
24 2 0.05
25 11 0.26
ACGTcount: A:0.32, C:0.05, G:0.04, T:0.59
Consensus pattern (24 bp):
TATTTTTATATACTATCATGTATA
Found at i:26935007 original size:84 final size:85
Alignment explanation
Indices: 26934850--26935010 Score: 193
Period size: 86 Copynumber: 1.9 Consensus size: 85
26934840 TTCTAATATG
* * *
26934850 TATATATTATGTAGATATTTTAATATTATATTATATATGCATTTTTTATATATATTACGTATATA
1 TATATATCATGTAGATATTTTAATACTATATTATATAT--ATTTTTCATATATATTACGTATATA
26934915 TACCTTTTAATATTGTATTTTTA
64 TA-CTTTTAATATTGTATTTTTA
* * *
26934938 TATATATCATGTATATATTTTGAATACTATATTATATAT-TTTTTACAT-TATCTTATGTATATA
1 TATATATCATGTAGATATTTT-AATACTATATTATATATATTTTT-CATATATATTACGTATATA
*
26935001 T-TTTTTAATA
64 TACTTTTAATA
26935011 ACTATATATT
Statistics
Matches: 64, Mismatches: 7, Indels: 8
0.81 0.09 0.10
Matches are distributed among these distances:
84 8 0.12
86 19 0.30
87 2 0.03
88 19 0.30
89 16 0.25
ACGTcount: A:0.34, C:0.05, G:0.05, T:0.56
Consensus pattern (85 bp):
TATATATCATGTAGATATTTTAATACTATATTATATATATTTTTCATATATATTACGTATATATA
CTTTTAATATTGTATTTTTA
Found at i:26935056 original size:25 final size:25
Alignment explanation
Indices: 26934940--26935061 Score: 90
Period size: 25 Copynumber: 4.9 Consensus size: 25
26934930 TATTTTTATA
* * * *
26934940 TATATCATGTATATATTTTGAATAC
1 TATATTATGTATATATTTTTAACAT
26934965 TATATTA--TATAT-TTTTT-ACAT
1 TATATTATGTATATATTTTTAACAT
* *
26934986 TATCTTATGTATATATTTTTTAATAACT
1 TATATTATGTATATA-TTTTTAA-CA-T
* * *
26935014 ATATATTATTTTTGTATTTTTAACAT
1 -TATATTATGTATATATTTTTAACAT
*
26935040 TATATTATGTACATATTTTTAA
1 TATATTATGTATATATTTTTAA
26935062 TACTATGTAT
Statistics
Matches: 74, Mismatches: 15, Indels: 16
0.70 0.14 0.15
Matches are distributed among these distances:
21 8 0.11
22 4 0.05
23 10 0.14
25 29 0.39
26 2 0.03
27 2 0.03
28 8 0.11
29 11 0.15
ACGTcount: A:0.34, C:0.06, G:0.04, T:0.57
Consensus pattern (25 bp):
TATATTATGTATATATTTTTAACAT
Found at i:26935070 original size:20 final size:21
Alignment explanation
Indices: 26935045--26935088 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
26935035 AACATTATAT
*
26935045 TATGTACATA-TTTTTAATAC
1 TATGTACATACTTTGTAATAC
*
26935065 TATGTATATACTTTGTAATAC
1 TATGTACATACTTTGTAATAC
26935086 TAT
1 TAT
26935089 TATTATGTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 9 0.43
21 12 0.57
ACGTcount: A:0.34, C:0.09, G:0.07, T:0.50
Consensus pattern (21 bp):
TATGTACATACTTTGTAATAC
Found at i:26937805 original size:24 final size:26
Alignment explanation
Indices: 26937773--26937821 Score: 84
Period size: 24 Copynumber: 2.0 Consensus size: 26
26937763 TGAAGAGAAT
26937773 GATGGATGATTTT-AG-GAATAACTG
1 GATGGATGATTTTAAGTGAATAACTG
26937797 GATGGATGATTTTAAGTGAATAACT
1 GATGGATGATTTTAAGTGAATAACT
26937822 AAAAGAAAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
24 13 0.57
25 2 0.09
26 8 0.35
ACGTcount: A:0.35, C:0.04, G:0.27, T:0.35
Consensus pattern (26 bp):
GATGGATGATTTTAAGTGAATAACTG
Found at i:26941840 original size:17 final size:16
Alignment explanation
Indices: 26941820--26941858 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 16
26941810 GAGGGAAAGC
*
26941820 AGAGAAAGAAATAGAAT
1 AGAGAAAGAAA-AGAAA
26941837 AGAGAAAAGAAAAGAAA
1 AGAG-AAAGAAAAGAAA
26941854 AGAGA
1 AGAGA
26941859 GTCGTACCCA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
16 1 0.05
17 12 0.60
18 7 0.35
ACGTcount: A:0.69, C:0.00, G:0.26, T:0.05
Consensus pattern (16 bp):
AGAGAAAGAAAAGAAA
Found at i:26942973 original size:16 final size:15
Alignment explanation
Indices: 26942952--26942984 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 15
26942942 CTAACATATT
26942952 AAATAAAACATAAATA
1 AAATAAAACA-AAATA
26942968 AAATAAAACAAAATA
1 AAATAAAACAAAATA
26942983 AA
1 AA
26942985 TTTTTTAATA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 7 0.41
16 10 0.59
ACGTcount: A:0.79, C:0.06, G:0.00, T:0.15
Consensus pattern (15 bp):
AAATAAAACAAAATA
Found at i:26949232 original size:8 final size:7
Alignment explanation
Indices: 26949221--26949292 Score: 72
Period size: 6 Copynumber: 11.4 Consensus size: 7
26949211 AAAATTAAAA
26949221 AAATATAT
1 AAATA-AT
26949229 AAATAAT
1 AAATAAT
26949236 -AATAAT
1 AAATAAT
26949242 -AATAAT
1 AAATAAT
26949248 -AATAAT
1 AAATAAT
26949254 -AATAAT
1 AAATAAT
26949260 -AATAAT
1 AAATAAT
26949266 -AATAAT
1 AAATAAT
26949272 -AATAAT
1 AAATAAT
26949278 -AATAAT
1 AAATAAT
26949284 -AATAAT
1 AAATAAT
26949290 AAA
1 AAA
26949293 CTCAATGACA
Statistics
Matches: 63, Mismatches: 0, Indels: 3
0.95 0.00 0.05
Matches are distributed among these distances:
6 54 0.86
7 4 0.06
8 5 0.08
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (7 bp):
AAATAAT
Found at i:26949236 original size:3 final size:3
Alignment explanation
Indices: 26949230--26949291 Score: 124
Period size: 3 Copynumber: 20.7 Consensus size: 3
26949220 AAAATATATA
26949230 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
26949278 AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AA
26949292 ACTCAATGAC
Statistics
Matches: 59, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 59 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:26949383 original size:17 final size:16
Alignment explanation
Indices: 26949363--26949400 Score: 58
Period size: 17 Copynumber: 2.3 Consensus size: 16
26949353 AAGAAATAGC
26949363 AAAATAAAAATATATAA
1 AAAATAAAAATATA-AA
*
26949380 AAAATTAAAATATAAA
1 AAAATAAAAATATAAA
26949396 AAAAT
1 AAAAT
26949401 TTACAAATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
16 7 0.35
17 13 0.65
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (16 bp):
AAAATAAAAATATAAA
Found at i:26949431 original size:4 final size:4
Alignment explanation
Indices: 26949422--26949455 Score: 68
Period size: 4 Copynumber: 8.5 Consensus size: 4
26949412 ATTATAAGAA
26949422 TAAT TAAT TAAT TAAT TAAT TAAT TAAT TAAT TA
1 TAAT TAAT TAAT TAAT TAAT TAAT TAAT TAAT TA
26949456 GTAAAATAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (4 bp):
TAAT
Found at i:26959397 original size:27 final size:26
Alignment explanation
Indices: 26959360--26959471 Score: 125
Period size: 27 Copynumber: 4.2 Consensus size: 26
26959350 AGCATGGCTG
* * *
26959360 CCAGAACAGATAATGTGACACAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
26959386 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
*
26959414 CCAGAATAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* * *
26959441 CCAGATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
26959468 CCAG
1 CCAG
26959472 GACGCTTCCT
Statistics
Matches: 75, Mismatches: 8, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
26 5 0.07
27 54 0.72
28 16 0.21
ACGTcount: A:0.36, C:0.23, G:0.23, T:0.18
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:26959425 original size:54 final size:54
Alignment explanation
Indices: 26959360--26959471 Score: 145
Period size: 54 Copynumber: 2.1 Consensus size: 54
26959350 AGCATGGCTG
*
26959360 CCAGAACAGATA-ATGTGACACAGTCACCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGATATATGTGACACAGCCACCAGAT-CAGATAATCGTGGCAGAGCCA
* * * * * *
26959414 CCAGAATAGATATATGTGGCAGAGCCACCAGATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATATATGTGACACAGCCACCAGATCAGATAATCGTGGCAGAGCCA
26959468 CCAG
1 CCAG
26959472 GACGCTTCCT
Statistics
Matches: 50, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
54 33 0.66
55 17 0.34
ACGTcount: A:0.36, C:0.23, G:0.23, T:0.18
Consensus pattern (54 bp):
CCAGAACAGATATATGTGACACAGCCACCAGATCAGATAATCGTGGCAGAGCCA
Found at i:26965748 original size:20 final size:20
Alignment explanation
Indices: 26965723--26965762 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
26965713 TACTCAAGAA
26965723 TAATAACCAGATAATGCATG
1 TAATAACCAGATAATGCATG
26965743 TAATAACCAGATAATGCATG
1 TAATAACCAGATAATGCATG
26965763 ATATTGGGCT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.45, C:0.15, G:0.15, T:0.25
Consensus pattern (20 bp):
TAATAACCAGATAATGCATG
Found at i:26970579 original size:19 final size:19
Alignment explanation
Indices: 26970541--26970590 Score: 66
Period size: 19 Copynumber: 2.6 Consensus size: 19
26970531 CACTAGGATG
26970541 CACTTTGTGTGCCAAGATT
1 CACTTTGTGTGCCAAGATT
*
26970560 CGCTTTGTGTGCC-AGTATT
1 CACTTTGTGTGCCAAG-ATT
*
26970579 CACTTTATGTGC
1 CACTTTGTGTGC
26970591 TAGATTACCA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
18 2 0.07
19 25 0.93
ACGTcount: A:0.16, C:0.22, G:0.22, T:0.40
Consensus pattern (19 bp):
CACTTTGTGTGCCAAGATT
Found at i:26973050 original size:3 final size:3
Alignment explanation
Indices: 26973044--26973099 Score: 103
Period size: 3 Copynumber: 18.7 Consensus size: 3
26973034 TATCTTTTTT
*
26973044 TTC TTC TTC TTT TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
26973092 TTC TTC TT
1 TTC TTC TT
26973100 TTATAAAATT
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 51 1.00
ACGTcount: A:0.00, C:0.30, G:0.00, T:0.70
Consensus pattern (3 bp):
TTC
Found at i:26974149 original size:57 final size:57
Alignment explanation
Indices: 26974058--26974172 Score: 149
Period size: 57 Copynumber: 2.0 Consensus size: 57
26974048 ATATTTAATG
** * * *
26974058 AATACTAATTGGTATTACGCGGTCGGATCGTAATACAGAAAGGTAACATATATTAGT
1 AATACTAAGCGGTATTACGCGGTCGGATCATAATACAGAAAGATAACATACATTAGT
* * * *
26974115 AATACTAAGCGGTATTACGTGGTTGGATCATAATACGGAAAGATAACTTACATTAGT
1 AATACTAAGCGGTATTACGCGGTCGGATCATAATACAGAAAGATAACATACATTAGT
26974172 A
1 A
26974173 GACGAATCTA
Statistics
Matches: 49, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
57 49 1.00
ACGTcount: A:0.37, C:0.12, G:0.21, T:0.30
Consensus pattern (57 bp):
AATACTAAGCGGTATTACGCGGTCGGATCATAATACAGAAAGATAACATACATTAGT
Found at i:26983537 original size:24 final size:26
Alignment explanation
Indices: 26983487--26983539 Score: 74
Period size: 24 Copynumber: 2.1 Consensus size: 26
26983477 TTTTTGGAGA
*
26983487 AAAAATGAGAGAGATTCGAATACAAG
1 AAAAATGAGAGACATTCGAATACAAG
*
26983513 AAAAA-GAGAGACTTTC-AATACAAG
1 AAAAATGAGAGACATTCGAATACAAG
26983537 AAA
1 AAA
26983540 TACACGAGAT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 11 0.44
25 9 0.36
26 5 0.20
ACGTcount: A:0.57, C:0.09, G:0.19, T:0.15
Consensus pattern (26 bp):
AAAAATGAGAGACATTCGAATACAAG
Found at i:26983938 original size:3 final size:3
Alignment explanation
Indices: 26983924--26984174 Score: 78
Period size: 3 Copynumber: 83.0 Consensus size: 3
26983914 AATAGTGTTT
* *
26983924 TTA TTA TT- TTA TTA TT- TT- TTA CCTTT TTA TTA CTA TTA TTA TTAA
1 TTA TTA TTA TTA TTA TTA TTA TTA --TTA TTA TTA TTA TTA TTA TT-A
* * * * * *
26983969 CCTA CTA TTA TTT TTA TCA ATA -TA GTA TTA TT- TTA TT- TT- TTA
1 -TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* ** *
26984011 -TA TTA TTA TTG TTA TTA GCA -CA TATA TTA TTA TTA TTA TTAA TGTA
1 TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA TT-A T-TA
* * * * * *
26984057 TCA TTG TTA TTT TCTA TT- TTA TTA TTA CT- TTA TTA CTA TTG TT-
1 TTA TTA TTA TTA T-TA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* *
26984100 TCTA TTA TTA TTA TT- TTCA TTA CTTCCA TTA TTA TTA TCA TTA TTT
1 T-TA TTA TTA TTA TTA TT-A TTA -TT--A TTA TTA TTA TTA TTA TTA
* *
26984146 TCTA TTG TCA TTA TTTA TTA TTA TTA TTA
1 T-TA TTA TTA TTA -TTA TTA TTA TTA TTA
26984175 ATATGCCGTT
Statistics
Matches: 186, Mismatches: 36, Indels: 52
0.68 0.13 0.19
Matches are distributed among these distances:
2 24 0.13
3 135 0.73
4 20 0.11
5 6 0.03
6 1 0.01
ACGTcount: A:0.27, C:0.08, G:0.03, T:0.61
Consensus pattern (3 bp):
TTA
Found at i:26984167 original size:16 final size:16
Alignment explanation
Indices: 26984128--26984174 Score: 60
Period size: 16 Copynumber: 2.9 Consensus size: 16
26984118 ATTACTTCCA
26984128 TTATTATTATCATTAT
1 TTATTATTATCATTAT
*
26984144 TT-TCTATTGTCATTAT
1 TTAT-TATTATCATTAT
*
26984160 TTATTATTATTATTA
1 TTATTATTATCATTA
26984175 ATATGCCGTT
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
15 1 0.04
16 24 0.92
17 1 0.04
ACGTcount: A:0.28, C:0.06, G:0.02, T:0.64
Consensus pattern (16 bp):
TTATTATTATCATTAT
Found at i:26984633 original size:123 final size:127
Alignment explanation
Indices: 26984451--26984710 Score: 327
Period size: 123 Copynumber: 2.1 Consensus size: 127
26984441 ATTTTTCAAG
* *
26984451 TAAAGGCAATATTCGGTACTTGGAAATTCGAGAAATCGTGTCTGAACGTACTGGGTTTCGATTTT
1 TAAAGGCAATATTCGGTACTTAGAAATTCGAGAAATCGTGTCTGAACGTACTGAGTTTCGATTTT
*
26984516 -TCGTTTGATCTAAA-A-TCGATTATCC-TTTT-AAATTAAAATACATGAGTTTTAAATAAAA
66 CT-GTTTGATCTAAATATTCGAATATCCTTTTTAAAATTAAAATACATGAGTTTTAAATAAAA
* * * * * *
26984574 TAAAGGCAATATTTC-TTATTTAGAAATTCGAGTAGTCGTG-CTTTAACGTACTGATTTTCGATT
1 TAAAGGCAATA-TTCGGTACTTAGAAATTCGAGAAATCGTGTC-TGAACGTACTGAGTTTCGATT
* * *
26984637 TTCTGTTTGATCTAAATATTTGAATATCCTTTTTAAAATTTAAATACATGAGTTTTAAATGAAA
64 TTCTGTTTGATCTAAATATTCGAATATCCTTTTTAAAATTAAAATACATGAGTTTTAAATAAAA
26984701 TAGAAGGCAA
1 TA-AAGGCAA
26984711 GCTCATACTC
Statistics
Matches: 117, Mismatches: 12, Indels: 11
0.84 0.09 0.08
Matches are distributed among these distances:
122 1 0.01
123 63 0.54
124 5 0.04
125 8 0.07
126 4 0.03
127 29 0.25
128 7 0.06
ACGTcount: A:0.34, C:0.11, G:0.16, T:0.39
Consensus pattern (127 bp):
TAAAGGCAATATTCGGTACTTAGAAATTCGAGAAATCGTGTCTGAACGTACTGAGTTTCGATTTT
CTGTTTGATCTAAATATTCGAATATCCTTTTTAAAATTAAAATACATGAGTTTTAAATAAAA
Found at i:26988922 original size:17 final size:17
Alignment explanation
Indices: 26988900--26988938 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
26988890 GTTGTTAAAT
*
26988900 AATAAAAATTGAAATAA
1 AATAAAAAATGAAATAA
*
26988917 AATAAAAAATGAAATAG
1 AATAAAAAATGAAATAA
26988934 AATAA
1 AATAA
26988939 GGAAATTTTG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.72, C:0.00, G:0.08, T:0.21
Consensus pattern (17 bp):
AATAAAAAATGAAATAA
Found at i:26995767 original size:26 final size:24
Alignment explanation
Indices: 26995738--26995786 Score: 71
Period size: 26 Copynumber: 2.0 Consensus size: 24
26995728 ATAAAAAAAG
*
26995738 TTTAAAAATATAATAAATCAAATATA
1 TTTAAAAACATAA-AAA-CAAATATA
26995764 TTTAAAAACATAAAAACAAATAT
1 TTTAAAAACATAAAAACAAATAT
26995787 TAAAACAAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 7 0.32
25 3 0.14
26 12 0.55
ACGTcount: A:0.63, C:0.06, G:0.00, T:0.31
Consensus pattern (24 bp):
TTTAAAAACATAAAAACAAATATA
Found at i:26995806 original size:21 final size:21
Alignment explanation
Indices: 26995757--26995815 Score: 59
Period size: 21 Copynumber: 2.8 Consensus size: 21
26995747 ATAATAAATC
*
26995757 AAAT-ATATTTAAAA-ACATAA
1 AAATAATA-TTAAAACAAATAA
*
26995777 AAACAAATATTAAAACAAATAA
1 AAA-TAATATTAAAACAAATAA
*
26995799 AAATAATACTAAAACAA
1 AAATAATATTAAAACAA
26995816 TTCTTAAAAC
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
20 3 0.09
21 18 0.56
22 11 0.34
ACGTcount: A:0.69, C:0.08, G:0.00, T:0.22
Consensus pattern (21 bp):
AAATAATATTAAAACAAATAA
Found at i:26997970 original size:2 final size:2
Alignment explanation
Indices: 26997965--26998004 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
26997955 AAAGGACTTT
26997965 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
26998005 AAGAAAACAT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:26999769 original size:49 final size:49
Alignment explanation
Indices: 26999697--26999795 Score: 198
Period size: 49 Copynumber: 2.0 Consensus size: 49
26999687 AAAAGATGTT
26999697 TGCAATTTTGTCATCCAAATTTTAAGGCGATTTCATTTTAGTCACCCAA
1 TGCAATTTTGTCATCCAAATTTTAAGGCGATTTCATTTTAGTCACCCAA
26999746 TGCAATTTTGTCATCCAAATTTTAAGGCGATTTCATTTTAGTCACCCAA
1 TGCAATTTTGTCATCCAAATTTTAAGGCGATTTCATTTTAGTCACCCAA
26999795 T
1 T
26999796 CATTAAATCC
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
49 50 1.00
ACGTcount: A:0.28, C:0.20, G:0.12, T:0.39
Consensus pattern (49 bp):
TGCAATTTTGTCATCCAAATTTTAAGGCGATTTCATTTTAGTCACCCAA
Found at i:27004263 original size:27 final size:27
Alignment explanation
Indices: 27004232--27004455 Score: 301
Period size: 27 Copynumber: 8.3 Consensus size: 27
27004222 AGGGGCATAT
* *
27004232 CAGTCATCTTACCATATAAGGGAAAAA
1 CAGTCATTTTACCATATAAGGGCAAAA
*
27004259 TAGTCATTTTACC-TCATAAGGGCAAAA
1 CAGTCATTTTACCAT-ATAAGGGCAAAA
* *
27004286 CAATCATTTTACCACATAAGGGCAAAA
1 CAGTCATTTTACCATATAAGGGCAAAA
*
27004313 CAGTCATTTTACC-TCATAAGGGAAAAA
1 CAGTCATTTTACCAT-ATAAGGGCAAAA
27004340 CAGTCATTTTACCATATAAGGGCAAAA
1 CAGTCATTTTACCATATAAGGGCAAAA
* *
27004367 CGGTTATTTTACC-TCATAAGGGCAAAA
1 CAGTCATTTTACCAT-ATAAGGGCAAAA
* *
27004394 CAATTATTTTACCATATAAGGGCAAAA
1 CAGTCATTTTACCATATAAGGGCAAAA
*
27004421 CAATCATTTTACCATATAAGGGCAAAA
1 CAGTCATTTTACCATATAAGGGCAAAA
27004448 CAGTCATT
1 CAGTCATT
27004456 CATCAATTTA
Statistics
Matches: 175, Mismatches: 16, Indels: 12
0.86 0.08 0.06
Matches are distributed among these distances:
26 2 0.01
27 171 0.98
28 2 0.01
ACGTcount: A:0.41, C:0.19, G:0.14, T:0.27
Consensus pattern (27 bp):
CAGTCATTTTACCATATAAGGGCAAAA
Found at i:27009092 original size:38 final size:36
Alignment explanation
Indices: 27009039--27009111 Score: 92
Period size: 38 Copynumber: 2.0 Consensus size: 36
27009029 TTAAAAAATC
* **
27009039 TAAAAATTATTAAAAAATTAATTTTAAAGAATATATAG
1 TAAAAATTATAAAAAAAAGAATTTTAAA-AAT-TATAG
*
27009077 TAAAAATTGTAAAAAAAAGAATTTTAAAAATTATA
1 TAAAAATTATAAAAAAAAGAATTTTAAAAATTATA
27009112 AAAAAAAAGT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
36 4 0.13
37 3 0.10
38 24 0.77
ACGTcount: A:0.60, C:0.00, G:0.05, T:0.34
Consensus pattern (36 bp):
TAAAAATTATAAAAAAAAGAATTTTAAAAATTATAG
Found at i:27012471 original size:190 final size:190
Alignment explanation
Indices: 27012148--27012495 Score: 502
Period size: 190 Copynumber: 1.8 Consensus size: 190
27012138 GTTATTATTT
** * * * *
27012148 TAAGAGATGTAGAATTTGATGAAGCTGATTATTGGAGATGGAGTGAAGAAGAAAAGAAAATTGAA
1 TAAGAGATGTAGAATTCAATGAAGCTGATTACTAGAGATGGAGCGAAGAAGAAAAGAAAATAGAA
** *
27012213 AGATTATTTTTCAGTGATAGCAAAGACGAAAACTTCATCAATCAAGAACAAGGTGGCAATCAAAG
66 AGATTATTTTTCAGTGATAAAAAAGACGAAAACTTCATCAATCAAGAACAAGGTGACAATCAAAG
*
27012278 CCCTCCACCAAGTCCTGTTGCAACAACTCCTACAACATTATCATCACCAATCAACAATAG
131 CCCTCCACCAACTCCTGTTGCAACAACTCCTACAACATTATCATCACCAATCAACAATAG
27012338 TAAGAGATGTAGAATTCAATGAAGCTGATTACTAGAGATGGAGCGAA-AATGAAAAGAAAATAGA
1 TAAGAGATGTAGAATTCAATGAAGCTGATTACTAGAGATGGAGCGAAGAA-GAAAAGAAAATAGA
* ** * * *
27012402 AGGATTATTTTTCAGTGATAAAAAAGACGACGACTTCATTAATCTAGAATAAGGCT-ACAATCAA
65 AAGATTATTTTTCAGTGATAAAAAAGACGAAAACTTCATCAATCAAGAACAAGG-TGACAATCAA
**
27012466 AGCCCTCCATTAACTCCTGTTGCAACAACT
129 AGCCCTCCACCAACTCCTGTTGCAACAACT
27012496 TGTAACACCC
Statistics
Matches: 138, Mismatches: 18, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
189 2 0.01
190 135 0.98
191 1 0.01
ACGTcount: A:0.41, C:0.16, G:0.18, T:0.24
Consensus pattern (190 bp):
TAAGAGATGTAGAATTCAATGAAGCTGATTACTAGAGATGGAGCGAAGAAGAAAAGAAAATAGAA
AGATTATTTTTCAGTGATAAAAAAGACGAAAACTTCATCAATCAAGAACAAGGTGACAATCAAAG
CCCTCCACCAACTCCTGTTGCAACAACTCCTACAACATTATCATCACCAATCAACAATAG
Found at i:27013948 original size:21 final size:21
Alignment explanation
Indices: 27013902--27013949 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 21
27013892 TGCACATGCT
* *
27013902 CGTGTGGAGGAGACAGACGCA
1 CGTGTGGAGGAGACACACACA
* *
27013923 TGTGTGGAGGAGACACACACC
1 CGTGTGGAGGAGACACACACA
27013944 CGTGTG
1 CGTGTG
27013950 ACCTAGTTAC
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.25, C:0.21, G:0.40, T:0.15
Consensus pattern (21 bp):
CGTGTGGAGGAGACACACACA
Found at i:27016019 original size:17 final size:18
Alignment explanation
Indices: 27015983--27016020 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 18
27015973 TAAGAAAACT
*
27015983 ATGACTAAAGATTTTGAA
1 ATGACTAAAGATTGTGAA
*
27016001 ATGAC-AAATATTGTGAA
1 ATGACTAAAGATTGTGAA
27016018 ATG
1 ATG
27016021 TCATACTTTC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 13 0.72
18 5 0.28
ACGTcount: A:0.45, C:0.05, G:0.18, T:0.32
Consensus pattern (18 bp):
ATGACTAAAGATTGTGAA
Found at i:27021317 original size:20 final size:20
Alignment explanation
Indices: 27021289--27021340 Score: 70
Period size: 20 Copynumber: 2.6 Consensus size: 20
27021279 TTAAAGCGGC
*
27021289 AATTGAATCAATTTGATTAA
1 AATTAAATCAATTTGATTAA
*
27021309 AATTAAATCAATTTGATTAG
1 AATTAAATCAATTTGATTAA
*
27021329 AATCAAA-CAATT
1 AATTAAATCAATT
27021341 CAGGATATAT
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
19 5 0.17
20 24 0.83
ACGTcount: A:0.48, C:0.08, G:0.08, T:0.37
Consensus pattern (20 bp):
AATTAAATCAATTTGATTAA
Found at i:27025231 original size:89 final size:89
Alignment explanation
Indices: 27025073--27025401 Score: 382
Period size: 89 Copynumber: 3.7 Consensus size: 89
27025063 AAATAAAATT
* * *** *
27025073 TGGAATAAAAT-CGTTGAA-GGACGGGAATCAATCCCGAAATGGATTTTATTTACCTTTAATTTC
1 TGGAATAAAATCCGTTGAATAG-CGGGAATAAATCCCGAAACAAATTTTATTTACCATTAATTTC
* *
27025136 CCGTTTGGAAATAAAATCTAAATGA
65 CCGTTTGGAAATAAAATCAAAATAA
* *
27025161 TGGAATAAAATCCGTTGAATGGTGGGAATAAATCCCGAAACAAATTTTATTTACCATTAA-TTCC
1 TGGAATAAAATCCGTTGAATAGCGGGAATAAATCCCGAAACAAATTTTATTTACCATTAATTTCC
27025225 CTGTTTGGAAATAAAATCAAAATAA
66 C-GTTTGGAAATAAAATCAAAATAA
* * *
27025250 TGGAATAAAATCCATTGAACAGCGAGAATAAATCCCGAAACAGAA-TTTATTTA-CATTTAATTT
1 TGGAATAAAATCCGTTGAATAGCGGGAATAAATCCCGAAACA-AATTTTATTTACCA-TTAATTT
*
27025313 CCCATTTGGAAATAAAATCAAAATAA
64 CCCGTTTGGAAATAAAATCAAAATAA
* * *** **
27025339 TGGAATAAAATCTGTT-AATCAGCGGGAATAAATCCTGAAATGGATTTTATTTACTTTTAATTT
1 TGGAATAAAATCCGTTGAAT-AGCGGGAATAAATCCCGAAACAAATTTTATTTACCATTAATTT
27025402 GGAAACAAAA
Statistics
Matches: 208, Mismatches: 24, Indels: 17
0.84 0.10 0.07
Matches are distributed among these distances:
88 21 0.10
89 178 0.86
90 9 0.04
ACGTcount: A:0.40, C:0.13, G:0.15, T:0.32
Consensus pattern (89 bp):
TGGAATAAAATCCGTTGAATAGCGGGAATAAATCCCGAAACAAATTTTATTTACCATTAATTTCC
CGTTTGGAAATAAAATCAAAATAA
Found at i:27031673 original size:42 final size:42
Alignment explanation
Indices: 27031591--27031686 Score: 111
Period size: 42 Copynumber: 2.3 Consensus size: 42
27031581 TTCTCCGCAG
* **
27031591 CTCGTGTGAGCAGTATCGTATAGCTAACATCCTGACCCACAA
1 CTCGTGAGAGCAGTATCGTATAGCTAACATCCCAACCCACAA
* * * * *
27031633 CTCGTGAGAGTAGTATTGTATAGCTAGCATCCCAATCCACAG
1 CTCGTGAGAGCAGTATCGTATAGCTAACATCCCAACCCACAA
*
27031675 CTCGTGTGAGCA
1 CTCGTGAGAGCA
27031687 TTTACTGAAT
Statistics
Matches: 44, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
42 44 1.00
ACGTcount: A:0.27, C:0.26, G:0.22, T:0.25
Consensus pattern (42 bp):
CTCGTGAGAGCAGTATCGTATAGCTAACATCCCAACCCACAA
Found at i:27033468 original size:91 final size:95
Alignment explanation
Indices: 27033310--27033577 Score: 296
Period size: 91 Copynumber: 2.9 Consensus size: 95
27033300 AGGATATATT
* * * * *
27033310 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATATGCA-TGCTGATGCATGTCC
1 GCCGATGCCATGTCCCAGACATGGTCCTACACTGGCTATTATGTATG-AGTGTTGATGCATGTCC
*
27033374 CAGACATGTCTTACACTAGCA-CAACTCTTA
65 CAGACATGTCTTACACTAGCACCAACTCTGA
* * *
27033404 GCCGATG-CGTGTCCCAGGCAT-GTCCTACACTGGCTATCTCTGT-TGAG-GTTGATGCATGTCC
1 GCCGATGCCATGTCCCAGACATGGTCCTACACTGGCTAT-TATGTATGAGTGTTGATGCATGTCC
* * * * *
27033465 CAGACATGTTTTACTCTGGCACTCATCTCTGC
65 CAGACATGTCTTACACTAGCAC-CAACTCTGA
* * * *
27033497 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTTATTTATGCGTGTTGATGCATGTCCC
1 GCCGATGCCATGTCCCAGACATGGTCCTACACTGGCTATTATGTATGAGTGTTGATGCATGTCCC
*
27033562 AGACACGTCTTACACT
66 AGACATGTCTTACACT
27033578 GGCTCACAGA
Statistics
Matches: 142, Mismatches: 24, Indels: 14
0.79 0.13 0.08
Matches are distributed among these distances:
91 32 0.23
92 16 0.11
93 27 0.19
94 22 0.15
95 17 0.12
96 28 0.20
ACGTcount: A:0.20, C:0.29, G:0.21, T:0.30
Consensus pattern (95 bp):
GCCGATGCCATGTCCCAGACATGGTCCTACACTGGCTATTATGTATGAGTGTTGATGCATGTCCC
AGACATGTCTTACACTAGCACCAACTCTGA
Found at i:27033509 original size:47 final size:45
Alignment explanation
Indices: 27033310--27033580 Score: 188
Period size: 47 Copynumber: 5.8 Consensus size: 45
27033300 AGGATATATT
* * *
27033310 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATATGC
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGC-ATCATCTCTGC
* * * **
27033358 ATGCTGATGCATGTCCCAGACATGTCTTACACTAGCA-CAACTCTTA
1 --GCCGATGCATGTCCCAGACATGTCTTACACTGGCATCATCTCTGC
* * * * *
27033404 GCCGATGCGTGTCCCAGGCATGTCCTACACTGGCTATC-TCTGTTGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGC-ATCATCT-CTG-C
** * *
27033451 GTTGATGCATGTCCCAGACATGTTTTACTCTGGCACTCATCTCTGC
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCA-TCATCTCTGC
* *
27033497 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGC-TCTTATTTATGC
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCATC--ATCTCTGC
** *
27033545 GTGTTGATGCATGTCCCAGACACGTCTTACACTGGC
1 --GCCGATGCATGTCCCAGACATGTCTTACACTGGC
27033581 TCACAGATCA
Statistics
Matches: 174, Mismatches: 35, Indels: 26
0.74 0.15 0.11
Matches are distributed among these distances:
44 29 0.17
45 3 0.02
46 14 0.08
47 45 0.26
48 45 0.26
49 27 0.16
50 11 0.06
ACGTcount: A:0.20, C:0.29, G:0.21, T:0.30
Consensus pattern (45 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGGCATCATCTCTGC
Found at i:27033572 original size:48 final size:46
Alignment explanation
Indices: 27033313--27033582 Score: 212
Period size: 48 Copynumber: 5.7 Consensus size: 46
27033303 ATATATTGCC
*
27033313 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATATGCATGCT
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGCTCTCATTTATGC--GCT
* * *
27033363 GATGCATGTCCCAGACATGTCTTACACTAGCAC-AACTCTTA-GC-C-
1 GATGCATGTCCCAGACATGTCTTACACTGGCTCTCA-T-TTATGCGCT
* * * *
27033407 GATGCGTGTCCCAGGCATGTCCTACACTGGCTATCTC-TGTTGA-G-GTT
1 GATGCATGTCCCAGACATGTCTTACACTGGC--TCTCAT-TT-ATGCGCT
* * * * * *
27033454 GATGCATGTCCCAGACATGTTTTACTCTGGCACTCATCTCTGCGCC
1 GATGCATGTCCCAGACATGTCTTACACTGGCTCTCATTTATGCGCT
* *
27033500 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTTATTTATGCGTGTT
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGCTCTCATTTATGC--GCT
*
27033550 GATGCATGTCCCAGACACGTCTTACACTGGCTC
1 GATGCATGTCCCAGACATGTCTTACACTGGCTC
27033583 ACAGATCACC
Statistics
Matches: 174, Mismatches: 31, Indels: 32
0.73 0.13 0.14
Matches are distributed among these distances:
44 27 0.16
45 9 0.05
46 9 0.05
47 41 0.24
48 50 0.29
49 29 0.17
50 9 0.05
ACGTcount: A:0.20, C:0.29, G:0.21, T:0.30
Consensus pattern (46 bp):
GATGCATGTCCCAGACATGTCTTACACTGGCTCTCATTTATGCGCT
Found at i:27037712 original size:28 final size:28
Alignment explanation
Indices: 27037680--27037763 Score: 83
Period size: 28 Copynumber: 3.2 Consensus size: 28
27037670 AACTTCGATC
27037680 ACGTGTGTAGTACTAAGTGCAGGCTACT
1 ACGTGTGTAGTACTAAGTGCAGGCTACT
* * *
27037708 ACGTGTATCAG-A-T-GGT-TAGG-T-C-
1 ACGTGTGT-AGTACTAAGTGCAGGCTACT
27037730 ACGTGTGTAGTACTAAGTGCAGGCTACT
1 ACGTGTGTAGTACTAAGTGCAGGCTACT
27037758 ACGTGT
1 ACGTGT
27037764 ACCGGATAAT
Statistics
Matches: 42, Mismatches: 6, Indels: 16
0.66 0.09 0.25
Matches are distributed among these distances:
21 2 0.05
22 8 0.19
23 2 0.05
24 3 0.07
25 6 0.14
26 3 0.07
27 2 0.05
28 14 0.33
29 2 0.05
ACGTcount: A:0.24, C:0.17, G:0.30, T:0.30
Consensus pattern (28 bp):
ACGTGTGTAGTACTAAGTGCAGGCTACT
Found at i:27037753 original size:50 final size:49
Alignment explanation
Indices: 27037632--27037820 Score: 234
Period size: 50 Copynumber: 3.8 Consensus size: 49
27037622 TGAGGTCGCA
* * * *
27037632 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTTCGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-TT-GGTCACG
* **
27037683 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT-GGTCACG
* * *
27037733 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACG
* * *
27037782 TGTGTAGTACTAAGTGGAGGCTACTATGCGTACCAGATA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
27037821 GCTTTAATAT
Statistics
Matches: 120, Mismatches: 18, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
49 40 0.33
50 46 0.38
51 34 0.28
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.29
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACG
Found at i:27045564 original size:10 final size:10
Alignment explanation
Indices: 27045549--27045582 Score: 68
Period size: 10 Copynumber: 3.4 Consensus size: 10
27045539 TGTTTTAGAG
27045549 TGTGTTTGAA
1 TGTGTTTGAA
27045559 TGTGTTTGAA
1 TGTGTTTGAA
27045569 TGTGTTTGAA
1 TGTGTTTGAA
27045579 TGTG
1 TGTG
27045583 GGAATGATAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 24 1.00
ACGTcount: A:0.18, C:0.00, G:0.32, T:0.50
Consensus pattern (10 bp):
TGTGTTTGAA
Found at i:27045929 original size:19 final size:19
Alignment explanation
Indices: 27045896--27045939 Score: 54
Period size: 18 Copynumber: 2.3 Consensus size: 19
27045886 CCCTGTTTCC
27045896 AAAAATTTTCAATTT-TTT
1 AAAAATTTTCAATTTATTT
*
27045914 AAAAATTTTCTGATTTATTT
1 AAAAATTTTC-AATTTATTT
*
27045934 CAAAAT
1 AAAAAT
27045940 GATCCCTGAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
18 10 0.45
19 4 0.18
20 8 0.36
ACGTcount: A:0.41, C:0.07, G:0.02, T:0.50
Consensus pattern (19 bp):
AAAAATTTTCAATTTATTT
Found at i:27047045 original size:35 final size:35
Alignment explanation
Indices: 27046984--27047099 Score: 164
Period size: 35 Copynumber: 3.3 Consensus size: 35
27046974 TACTCTTTGT
*
27046984 TTGGCGTGTTT-A-ATTGGATTAGCTCTTATGAGCA
1 TTGGCGTGTTTCAGA-TGGACTAGCTCTTATGAGCA
* *
27047018 TTAGCGTGTTTCAGATGGACTAGCTCTTGTGAGCA
1 TTGGCGTGTTTCAGATGGACTAGCTCTTATGAGCA
**
27047053 TTGGCGTGTTTTGGATGGACTAGCTCTTATGAGCA
1 TTGGCGTGTTTCAGATGGACTAGCTCTTATGAGCA
27047088 TTGGCGTGTTTC
1 TTGGCGTGTTTC
27047100 TGTTGGATTG
Statistics
Matches: 72, Mismatches: 8, Indels: 3
0.87 0.10 0.04
Matches are distributed among these distances:
34 10 0.14
35 61 0.85
36 1 0.01
ACGTcount: A:0.17, C:0.15, G:0.29, T:0.39
Consensus pattern (35 bp):
TTGGCGTGTTTCAGATGGACTAGCTCTTATGAGCA
Found at i:27047123 original size:70 final size:71
Alignment explanation
Indices: 27046998--27047142 Score: 175
Period size: 70 Copynumber: 2.1 Consensus size: 71
27046988 CGTGTTTAAT
* * *
27046998 TGGATTAGCTCTTATGAGCATTAGCGTGTTTCAGATGGACTAGCTCTTGTGAGCA-TTGGCGTGT
1 TGGACTAGCTCTTATGAGCATTAGCGTGTTTCAGATGGACTAGCTCGTGTAAGCATTTGGCGTGT
*
27047062 TTTGGA
66 TATGGA
* * * * * * *
27047068 TGGACTAGCTCTTATGAGCATTGGCGTGTTTCTGTTGGATTGGTTCGTGTAAGCATTTGGTGTGT
1 TGGACTAGCTCTTATGAGCATTAGCGTGTTTCAGATGGACTAGCTCGTGTAAGCATTTGGCGTGT
*
27047133 TATGGT
66 TATGGA
27047139 TGGA
1 TGGA
27047143 TTGACGATGT
Statistics
Matches: 62, Mismatches: 12, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
70 46 0.74
71 16 0.26
ACGTcount: A:0.17, C:0.12, G:0.32, T:0.39
Consensus pattern (71 bp):
TGGACTAGCTCTTATGAGCATTAGCGTGTTTCAGATGGACTAGCTCGTGTAAGCATTTGGCGTGT
TATGGA
Found at i:27051670 original size:40 final size:40
Alignment explanation
Indices: 27051625--27051754 Score: 172
Period size: 40 Copynumber: 3.2 Consensus size: 40
27051615 CGGAATATAA
27051625 CCGGATATAACCA-TGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACT-TGCACAAATGCCTTCGGGTCTTAGC
* ** * *
27051665 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTTGCACAAATGCCTTCGGGTCTTAGC
* * *
27051705 CCGGATATAGCCACTTGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTTGCACAAATGCCTTCGGGTCTTAGC
27051745 CCGGATATAA
1 CCGGATATAA
27051755 TTTCCAGCAT
Statistics
Matches: 75, Mismatches: 14, Indels: 2
0.82 0.15 0.02
Matches are distributed among these distances:
40 74 0.99
41 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAACCACTTGCACAAATGCCTTCGGGTCTTAGC
Found at i:27051769 original size:40 final size:39
Alignment explanation
Indices: 27051641--27051791 Score: 153
Period size: 40 Copynumber: 3.8 Consensus size: 39
27051631 ATAACCATGT
* * *
27051641 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCAC-C
** *
27051681 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAGCCACTT
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCAC-C
* **
27051721 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCC
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCACC
* *
27051760 AGCATAATTGTCTTCGGG-CTTAGCCCGGATAT
1 -GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
27051792 CATTCAATTT
Statistics
Matches: 94, Mismatches: 14, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
39 15 0.16
40 77 0.82
41 2 0.02
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (39 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCACC
Found at i:27051775 original size:80 final size:79
Alignment explanation
Indices: 27051625--27051791 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
27051615 CGGAATATAA
*
27051625 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAATG
1 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATG
27051690 CCTTCGGGTCTTAGC
66 CCTTCGGG-CTTAGC
* * * ** *
27051705 CCGGATATAGCCACT-TGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCA-TGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTC-GCACGAA
*
27051767 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
27051784 CCGGATAT
1 CCGGATAT
27051792 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 17 0.22
80 58 0.76
81 1 0.01
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (79 bp):
CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:27055642 original size:17 final size:18
Alignment explanation
Indices: 27055600--27055648 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
27055590 AGTTGAAAAG
27055600 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
27055619 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
27055636 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
27055649 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:27056536 original size:40 final size:40
Alignment explanation
Indices: 27056470--27056636 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
27056460 AAATTGAATG
* * *
27056470 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * **
27056509 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
27056549 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
27056589 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
27056629 ATATCCGG
1 ATATCCGG
27056637 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:27062991 original size:39 final size:38
Alignment explanation
Indices: 27062869--27062997 Score: 159
Period size: 40 Copynumber: 3.3 Consensus size: 38
27062859 CGGAATATAA
*
27062869 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCA-CTGCAC-AATGCCTTCGGGTCTTAGC
* **
27062909 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACT-GCAC-AATGCCTTCGGGTCTTAGC
* *
27062949 CCGGATATAGCCACTGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTGCACAA-TGCCTTCGGGTCTTAGC
27062988 CCGGATATAA
1 CCGGATATAA
27062998 TTTCCAGCAT
Statistics
Matches: 76, Mismatches: 11, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
38 2 0.03
39 30 0.39
40 44 0.58
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (38 bp):
CCGGATATAACCACTGCACAATGCCTTCGGGTCTTAGC
Found at i:27063018 original size:79 final size:79
Alignment explanation
Indices: 27062869--27063034 Score: 203
Period size: 79 Copynumber: 2.1 Consensus size: 79
27062859 CGGAATATAA
* *
27062869 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAATG
1 CCGGATATAACCATCTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATG
27062934 CCTTCGGGTCTTAGC
66 CCTTCGGG-CTTAGC
* * * ** *
27062949 CCGGATATAGCCA-CTGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAAT
1 CCGGATATAACCATCTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTC-GCACGAA-
*
27063011 TGTCTTCGGGCTTAGC
64 TGCCTTCGGGCTTAGC
27063027 CCGGATAT
1 CCGGATAT
27063035 CATTCAATTT
Statistics
Matches: 75, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 17 0.23
79 46 0.61
80 12 0.16
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (79 bp):
CCGGATATAACCATCTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:27063030 original size:39 final size:38
Alignment explanation
Indices: 27062885--27063034 Score: 144
Period size: 40 Copynumber: 3.8 Consensus size: 38
27062875 ATAACCATGT
* * * *
27062885 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATA-TA-GCCAC
27062925 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAGCCAC
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAGCCAC
* *
27062963 TGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA-
1 -GCACAATTGCCTTCGGGTCTTAGCCCGGATAT-A--GCCAC
* *
27063004 GCATAATTGTCTTCGGG-CTTAGCCCGGATAT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
27063035 CATTCAATTT
Statistics
Matches: 96, Mismatches: 8, Indels: 13
0.82 0.07 0.11
Matches are distributed among these distances:
38 5 0.05
39 42 0.44
40 44 0.46
41 2 0.02
42 3 0.03
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (38 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAGCCAC
Found at i:27066493 original size:42 final size:42
Alignment explanation
Indices: 27066393--27066553 Score: 151
Period size: 43 Copynumber: 3.8 Consensus size: 42
27066383 TGTGTTATCA
* * * * * *
27066393 TGTAAGACCACGTCTGGGACGTTGGCATTGATTTGTGAGTTACG
1 TGTAAGACCATGTCTAGGACATTGGCATCG-TATATGA-TTACG
*
27066437 TGTAAGACCATGTCTAGGACATTGGCATCGTATATGATTTCG
1 TGTAAGACCATGTCTAGGACATTGGCATCGTATATGATTACG
* * * * * * *
27066479 TGTAAGACCCTGTCTGGGACAATAGCATTGATATTTGATTACA
1 TGTAAGACCATGTCTAGGACATTGGCATCG-TATATGATTACG
* *
27066522 TGTAAGACCAAGTCTAGGACGTTGGCATCGTA
1 TGTAAGACCATGTCTAGGACATTGGCATCGTA
27066554 CGAGCTTATG
Statistics
Matches: 94, Mismatches: 22, Indels: 4
0.78 0.18 0.03
Matches are distributed among these distances:
42 31 0.33
43 37 0.39
44 26 0.28
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.31
Consensus pattern (42 bp):
TGTAAGACCATGTCTAGGACATTGGCATCGTATATGATTACG
Found at i:27066549 original size:85 final size:86
Alignment explanation
Indices: 27066393--27066553 Score: 229
Period size: 85 Copynumber: 1.9 Consensus size: 86
27066383 TGTGTTATCA
** * * *
27066393 TGTAAGACCACGTCTGGGACGTTGGCATTGATTTGTGAGTTACGTGTAAGACCATGTCTAGGACA
1 TGTAAGACCACGTCTGGGACAATAGCATTGATTTGTGAGTTACATGTAAGACCAAGTCTAGGACA
27066458 TTGGCATCGTATATGATTTCG
66 TTGGCATCGTATATGATTTCG
27066479 TGTAAGACC-CTGTCTGGGACAATAGCATTGATATT-TGA-TTACATGTAAGACCAAGTCTAGGA
1 TGTAAGACCAC-GTCTGGGACAATAGCATTGAT-TTGTGAGTTACATGTAAGACCAAGTCTAGGA
*
27066541 CGTTGGCATCGTA
64 CATTGGCATCGTA
27066554 CGAGCTTATG
Statistics
Matches: 67, Mismatches: 6, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
85 35 0.52
86 30 0.45
87 2 0.03
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.31
Consensus pattern (86 bp):
TGTAAGACCACGTCTGGGACAATAGCATTGATTTGTGAGTTACATGTAAGACCAAGTCTAGGACA
TTGGCATCGTATATGATTTCG
Found at i:27067722 original size:2 final size:2
Alignment explanation
Indices: 27067715--27067752 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
27067705 ATGATTTGAG
27067715 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
27067753 GGCCAAGTGA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:27075309 original size:30 final size:30
Alignment explanation
Indices: 27075265--27075333 Score: 97
Period size: 30 Copynumber: 2.3 Consensus size: 30
27075255 TAAAGATAAC
*
27075265 AAGAAAACC-GAATAAAGAAATCCA-AGATA
1 AAGAAACCCAGAATAAAGAAATCCAGA-ATA
*
27075294 GAGAAACCCAGAATAAAGAAATCCAGAATA
1 AAGAAACCCAGAATAAAGAAATCCAGAATA
27075324 AAGAAACCCA
1 AAGAAACCCA
27075334 AGATACGATA
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
29 7 0.20
30 27 0.77
31 1 0.03
ACGTcount: A:0.59, C:0.17, G:0.14, T:0.09
Consensus pattern (30 bp):
AAGAAACCCAGAATAAAGAAATCCAGAATA
Found at i:27075313 original size:15 final size:15
Alignment explanation
Indices: 27075265--27075333 Score: 79
Period size: 15 Copynumber: 4.7 Consensus size: 15
27075255 TAAAGATAAC
*
27075265 AAGAAAACC-GAATA
1 AAGAAACCCAGAATA
*
27075279 AAGAAATCCA-AGATA
1 AAGAAACCCAGA-ATA
*
27075294 GAGAAACCCAGAATA
1 AAGAAACCCAGAATA
*
27075309 AAGAAATCCAGAATA
1 AAGAAACCCAGAATA
27075324 AAGAAACCCA
1 AAGAAACCCA
27075334 AGATACGATA
Statistics
Matches: 46, Mismatches: 6, Indels: 5
0.81 0.11 0.09
Matches are distributed among these distances:
14 9 0.20
15 36 0.78
16 1 0.02
ACGTcount: A:0.59, C:0.17, G:0.14, T:0.09
Consensus pattern (15 bp):
AAGAAACCCAGAATA
Found at i:27084346 original size:23 final size:24
Alignment explanation
Indices: 27084316--27084370 Score: 78
Period size: 23 Copynumber: 2.3 Consensus size: 24
27084306 TTTTTTCTTT
*
27084316 TATT-TTATGTTATATTTTAGT-A
1 TATTATTATATTATATTTTAGTAA
27084338 TATTATTATATTATATTTTAGTAA
1 TATTATTATATTATATTTTAGTAA
27084362 TAATTATTA
1 T-ATTATTA
27084371 CAAATGTATG
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
22 4 0.14
23 16 0.55
24 2 0.07
25 7 0.24
ACGTcount: A:0.35, C:0.00, G:0.05, T:0.60
Consensus pattern (24 bp):
TATTATTATATTATATTTTAGTAA
Found at i:27086890 original size:60 final size:60
Alignment explanation
Indices: 27086796--27086911 Score: 160
Period size: 60 Copynumber: 1.9 Consensus size: 60
27086786 CTTGGTCATA
* * * * *
27086796 TATCACCCTATGAATAGGAGGATTAGCTTCCTAACCATTCAAATTATCATTCAGACTAGG
1 TATCACCCTACGAACAGGAAGATTAACATCCTAACCATTCAAATTATCATTCAGACTAGG
* * *
27086856 TATCACCTTACGAACAGGAAGATTAACATCCTAACCATTCAGATTATCATTGAGAC
1 TATCACCCTACGAACAGGAAGATTAACATCCTAACCATTCAAATTATCATTCAGAC
27086912 CAAGATAATT
Statistics
Matches: 48, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
60 48 1.00
ACGTcount: A:0.35, C:0.22, G:0.14, T:0.28
Consensus pattern (60 bp):
TATCACCCTACGAACAGGAAGATTAACATCCTAACCATTCAAATTATCATTCAGACTAGG
Found at i:27092511 original size:46 final size:46
Alignment explanation
Indices: 27092444--27092664 Score: 270
Period size: 46 Copynumber: 4.8 Consensus size: 46
27092434 TGTAACCCGC
* * *
27092444 CCATAAGCGAACTCGGACTCAACTCAACGAGCTAGGGCGTTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
27092490 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
* *
27092536 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--G-C--GTTCGCAT
* * * * *
27092586 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
*
27092629 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
27092665 ATGCTCAACC
Statistics
Matches: 154, Mismatches: 12, Indels: 18
0.84 0.07 0.10
Matches are distributed among these distances:
42 2 0.01
43 3 0.02
44 2 0.01
45 2 0.01
46 106 0.69
47 28 0.18
48 3 0.02
49 2 0.01
50 3 0.02
51 3 0.02
ACGTcount: A:0.29, C:0.29, G:0.22, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
Found at i:27092628 original size:93 final size:93
Alignment explanation
Indices: 27092498--27092668 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
27092488 ATCCATAAGT
* *
27092498 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
27092563 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
27092591 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
27092656 CGAGTTCGGATGC
66 CGAGTTCGGATGC
27092669 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:27100165 original size:93 final size:93
Alignment explanation
Indices: 27100053--27100224 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
27100043 CGCCCATAAG
* *
27100053 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
27100118 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
27100146 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
27100211 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
27100225 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:27100221 original size:46 final size:46
Alignment explanation
Indices: 27100046--27100221 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
27100036 TGTAACCCGC
* * *
27100046 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
27100092 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
27100142 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
27100185 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
27100222 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:27111466 original size:26 final size:26
Alignment explanation
Indices: 27111433--27111484 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
27111423 CTCCTTTCCC
27111433 TTGTAGATGATTCACAACTTGCCCCA
1 TTGTAGATGATTCACAACTTGCCCCA
27111459 TTGTAGATGATTCACAACTTGCCCCA
1 TTGTAGATGATTCACAACTTGCCCCA
27111485 AAGTTTGCAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.27, C:0.27, G:0.15, T:0.31
Consensus pattern (26 bp):
TTGTAGATGATTCACAACTTGCCCCA
Found at i:27111622 original size:223 final size:223
Alignment explanation
Indices: 27111229--27111657 Score: 750
Period size: 223 Copynumber: 1.9 Consensus size: 223
27111219 GGGTGTAAGG
* *
27111229 TGCCACATTGTAGATGATTCACAACTTGCCCCAAAGTTTGCATAAAATTGTTAGAGCCCAGTTCA
1 TGCCACATTGTAGATGATTCACAACTTGCCCCAAAGTTTGCATAAAATTGTGAGAGCCCAGCTCA
*
27111294 ACATATAGCAGATGTTAATCCATCATAAGTGTCCTTAAAGAATATGCATCCCTTAATAAAAATCT
66 ACATATAGCAGATGTTAATCCATCATAAGTGTCCCTAAAGAATATGCATCCCTTAATAAAAATCT
* *
27111359 CTTAATTACATTTTGATTTGAAGTTGCACTAGATAAATTGTTTCGAGTATTGATTGTCTCACAAC
131 CTTAATTACATTTTGATTTGAAGTTGCACTAGATAAATTGTTTCGAGCATTGATTGCCTCACAAC
27111424 TCCTTTCCCTTGTAGATGATTCACAACT
196 TCCTTTCCCTTGTAGATGATTCACAACT
* * *
27111452 TGCCCCATTGTAGATGATTCACAACTTGCCCCAAAGTTTGCATAATATTGTGAGAGCCTAGCTCA
1 TGCCACATTGTAGATGATTCACAACTTGCCCCAAAGTTTGCATAAAATTGTGAGAGCCCAGCTCA
* * *
27111517 ACATCTAGTAGATGTTTATCCATCATAAGTGTCCCTAAAGAATATGCATCCCTTAATAAAAATCT
66 ACATATAGCAGATGTTAATCCATCATAAGTGTCCCTAAAGAATATGCATCCCTTAATAAAAATCT
*
27111582 CTTAATTACATTTTGATTTGAAGTTGCACTAGATAAATTGTTTCTAGCATTGATTGCCTCACAAC
131 CTTAATTACATTTTGATTTGAAGTTGCACTAGATAAATTGTTTCGAGCATTGATTGCCTCACAAC
27111647 TCCTTTCCCTT
196 TCCTTTCCCTT
27111658 TTCCTTGTAT
Statistics
Matches: 194, Mismatches: 12, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
223 194 1.00
ACGTcount: A:0.31, C:0.21, G:0.14, T:0.35
Consensus pattern (223 bp):
TGCCACATTGTAGATGATTCACAACTTGCCCCAAAGTTTGCATAAAATTGTGAGAGCCCAGCTCA
ACATATAGCAGATGTTAATCCATCATAAGTGTCCCTAAAGAATATGCATCCCTTAATAAAAATCT
CTTAATTACATTTTGATTTGAAGTTGCACTAGATAAATTGTTTCGAGCATTGATTGCCTCACAAC
TCCTTTCCCTTGTAGATGATTCACAACT
Found at i:27116916 original size:33 final size:33
Alignment explanation
Indices: 27116874--27116980 Score: 126
Period size: 33 Copynumber: 3.2 Consensus size: 33
27116864 GAACTTGAGC
*
27116874 CGGGAGGAGTAGAATACGGCGGTGGATACGGGT
1 CGGGAGGAGTAGAGTACGGCGGTGGATACGGGT
* *
27116907 CGGGAGGAGTAGAGTACGGCGGTGAATACGGCT
1 CGGGAGGAGTAGAGTACGGCGGTGGATACGGGT
* * * *
27116940 CTGGAGGAGTTGAGTACATG-GGTGGATACGGGC
1 CGGGAGGAGTAGAGTAC-GGCGGTGGATACGGGT
*
27116973 CGGAAGGA
1 CGGGAGGA
27116981 ACGGAGTACT
Statistics
Matches: 62, Mismatches: 11, Indels: 2
0.83 0.15 0.03
Matches are distributed among these distances:
33 61 0.98
34 1 0.02
ACGTcount: A:0.24, C:0.13, G:0.47, T:0.16
Consensus pattern (33 bp):
CGGGAGGAGTAGAGTACGGCGGTGGATACGGGT
Found at i:27119450 original size:120 final size:113
Alignment explanation
Indices: 27119112--27119459 Score: 449
Period size: 113 Copynumber: 3.0 Consensus size: 113
27119102 TAACAATTTA
* * * *
27119112 TAATCATAAATTACTAACACAAAATAACTATAAAATTATTTTTTTT-AAATA-ATTACTAAATAA
1 TAATCTTAAATTACT-A-ATAAAATAGCTATAAAATTATTTTTTTTAAAATATATTACTAAAAAA
27119175 A-A-AAT-CATAATACACTAAACCACTAAACACTAACAATTTATATAACC
64 ACACAATACATAATACACTAAACCACTAAACACTAACAATTTATATAACC
* * *
27119222 TAATATTAAATTACTAATAAAATAGCTATAAAAATA-TTTTTTTAAAATATATTACTAAAAAATC
1 TAATCTTAAATTACTAATAAAATAGCTATAAAATTATTTTTTTTAAAATATATTACTAAAAAAAC
* *
27119286 ACAATACATTAA-ACCACTAAACCACTAAACACTAGCAATTTATATAATC
66 ACAATACA-TAATA-CACTAAACCACTAAACACTAACAATTTATATAACC
27119335 TAATCTTAAATTACTAATAAAATAGCTATAAAATTATTTTTTTTAAAAAATATATTATTACTAAA
1 TAATCTTAAATTACTAATAAAATAGCTATAAAATTATTTTTTTT---AAA-ATA-TATTACT-AA
* *
27119400 AAAAACACAATATACTAATACACTAAACTACTAAACACTAACAATTTATATAACC
60 AAAAACACAATACA-TAATACACTAAACCACTAAACACTAACAATTTATATAACC
27119455 TAATC
1 TAATC
27119460 AACTATAAAA
Statistics
Matches: 206, Mismatches: 17, Indels: 20
0.85 0.07 0.08
Matches are distributed among these distances:
107 7 0.03
108 22 0.11
109 12 0.06
110 14 0.07
111 3 0.01
112 3 0.01
113 70 0.34
114 7 0.03
117 3 0.01
118 3 0.01
119 7 0.03
120 54 0.26
121 1 0.00
ACGTcount: A:0.52, C:0.14, G:0.01, T:0.33
Consensus pattern (113 bp):
TAATCTTAAATTACTAATAAAATAGCTATAAAATTATTTTTTTTAAAATATATTACTAAAAAAAC
ACAATACATAATACACTAAACCACTAAACACTAACAATTTATATAACC
Found at i:27119754 original size:16 final size:16
Alignment explanation
Indices: 27119729--27119761 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
27119719 ACATTACCCT
*
27119729 TTTTTTCTTCTTCTTC
1 TTTTTCCTTCTTCTTC
27119745 TTTTTCCTTCTTCTTC
1 TTTTTCCTTCTTCTTC
27119761 T
1 T
27119762 CCTTCTCCTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.00, C:0.27, G:0.00, T:0.73
Consensus pattern (16 bp):
TTTTTCCTTCTTCTTC
Found at i:27124589 original size:28 final size:28
Alignment explanation
Indices: 27124549--27124606 Score: 116
Period size: 28 Copynumber: 2.1 Consensus size: 28
27124539 CTCTACCATA
27124549 TGATTGATTGCCTCGTCTATATGTTCCT
1 TGATTGATTGCCTCGTCTATATGTTCCT
27124577 TGATTGATTGCCTCGTCTATATGTTCCT
1 TGATTGATTGCCTCGTCTATATGTTCCT
27124605 TG
1 TG
27124607 TCCACTTCTA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.14, C:0.21, G:0.19, T:0.47
Consensus pattern (28 bp):
TGATTGATTGCCTCGTCTATATGTTCCT
Found at i:27126314 original size:23 final size:21
Alignment explanation
Indices: 27126267--27126314 Score: 60
Period size: 23 Copynumber: 2.2 Consensus size: 21
27126257 CAAAGTATAA
*
27126267 ATATGTAAAATCACAATTAGT
1 ATATGTAAAATCACAAGTAGT
*
27126288 ATATGATAAAATCAAGAAGTAGT
1 ATATG-TAAAATC-ACAAGTAGT
27126311 ATAT
1 ATAT
27126315 ATCTAAAAGC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
21 5 0.22
22 7 0.30
23 11 0.48
ACGTcount: A:0.50, C:0.06, G:0.12, T:0.31
Consensus pattern (21 bp):
ATATGTAAAATCACAAGTAGT
Found at i:27136184 original size:27 final size:27
Alignment explanation
Indices: 27136154--27136207 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
27136144 ATATGATGAA
27136154 AAAGAAATGGTTTAGAACACTCCCCAT
1 AAAGAAATGGTTTAGAACACTCCCCAT
27136181 AAAGAAATGGTTTAGAACACTCCCCAT
1 AAAGAAATGGTTTAGAACACTCCCCAT
27136208 GTCGTTTTCG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.41, C:0.22, G:0.15, T:0.22
Consensus pattern (27 bp):
AAAGAAATGGTTTAGAACACTCCCCAT
Found at i:27152163 original size:6 final size:6
Alignment explanation
Indices: 27152153--27152205 Score: 88
Period size: 6 Copynumber: 8.8 Consensus size: 6
27152143 GTAAACAACA
* *
27152153 TTTGAA TTTGAA TTTGAT TTTGAT TTTGAT TTTGAT TTTGAT TTTGAT
1 TTTGAT TTTGAT TTTGAT TTTGAT TTTGAT TTTGAT TTTGAT TTTGAT
27152201 TTTGA
1 TTTGA
27152206 GGTTGTTTAT
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
6 46 1.00
ACGTcount: A:0.21, C:0.00, G:0.17, T:0.62
Consensus pattern (6 bp):
TTTGAT
Found at i:27159142 original size:20 final size:21
Alignment explanation
Indices: 27159115--27159172 Score: 109
Period size: 20 Copynumber: 2.8 Consensus size: 21
27159105 GCCTAAAACA
27159115 ACACACGAGGTGCCTGATACG
1 ACACACGAGGTGCCTGATACG
27159136 A-ACACGAGGTGCCTGATACG
1 ACACACGAGGTGCCTGATACG
27159156 ACACACGAGGTGCCTGA
1 ACACACGAGGTGCCTGA
27159173 AATACTTCAC
Statistics
Matches: 36, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
20 20 0.56
21 16 0.44
ACGTcount: A:0.29, C:0.28, G:0.29, T:0.14
Consensus pattern (21 bp):
ACACACGAGGTGCCTGATACG
Found at i:27160045 original size:37 final size:37
Alignment explanation
Indices: 27159995--27160067 Score: 137
Period size: 37 Copynumber: 2.0 Consensus size: 37
27159985 TTTCAAACAT
27159995 CTCTTTAACACATGTGAATCGTCACAAAGAAAGCATA
1 CTCTTTAACACATGTGAATCGTCACAAAGAAAGCATA
*
27160032 CTCTTTAACACATGTGAATCGTCTCAAAGAAAGCAT
1 CTCTTTAACACATGTGAATCGTCACAAAGAAAGCAT
27160068 CTCATCTTGC
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.38, C:0.22, G:0.14, T:0.26
Consensus pattern (37 bp):
CTCTTTAACACATGTGAATCGTCACAAAGAAAGCATA
Found at i:27173914 original size:25 final size:25
Alignment explanation
Indices: 27173869--27173916 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
27173859 GCTATTTGAA
* *
27173869 GAAAATTATTATTAAGTTAATTACT
1 GAAAATAATTACTAAGTTAATTACT
27173894 GAAAATAATTACTAA-TCTAATTA
1 GAAAATAATTACTAAGT-TAATTA
27173917 ATTCACAAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 1 0.05
25 19 0.95
ACGTcount: A:0.48, C:0.06, G:0.06, T:0.40
Consensus pattern (25 bp):
GAAAATAATTACTAAGTTAATTACT
Found at i:27173984 original size:33 final size:34
Alignment explanation
Indices: 27173941--27174011 Score: 90
Period size: 34 Copynumber: 2.1 Consensus size: 34
27173931 AATGTGAATT
* *
27173941 TAAAACAACAATAAT-TAACTAATTAAATTAAAC
1 TAAAACAACAATAATAAAACTAATTAAATAAAAC
* * *
27173974 TAAAATAACAATAATAAAATTAATTAACTAAAAC
1 TAAAACAACAATAATAAAACTAATTAAATAAAAC
27174008 TAAA
1 TAAA
27174012 CCCAAGTTAA
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
33 14 0.44
34 18 0.56
ACGTcount: A:0.63, C:0.10, G:0.00, T:0.27
Consensus pattern (34 bp):
TAAAACAACAATAATAAAACTAATTAAATAAAAC
Found at i:27177979 original size:15 final size:15
Alignment explanation
Indices: 27177959--27178014 Score: 80
Period size: 15 Copynumber: 3.9 Consensus size: 15
27177949 TTTCTGGTTT
27177959 TTTAGGGCTTTAAGG
1 TTTAGGGCTTTAAGG
27177974 TTTAGGGCTTTAAGG
1 TTTAGGGCTTTAAGG
27177989 TTTAGGGC--TAAGG
1 TTTAGGGCTTTAAGG
* *
27178002 TTTTGGGTTTTAA
1 TTTAGGGCTTTAA
27178015 ATTGATAAAT
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
13 11 0.30
15 26 0.70
ACGTcount: A:0.20, C:0.05, G:0.32, T:0.43
Consensus pattern (15 bp):
TTTAGGGCTTTAAGG
Found at i:27178013 original size:28 final size:29
Alignment explanation
Indices: 27177959--27178014 Score: 78
Period size: 28 Copynumber: 1.9 Consensus size: 29
27177949 TTTCTGGTTT
27177959 TTTAGGGCTTTAAGGTTTAGGGCTTTAAGG
1 TTTAGGGC-TTAAGGTTTAGGGCTTTAAGG
* *
27177989 TTTAGGGC-TAAGGTTTTGGGTTTTAA
1 TTTAGGGCTTAAGGTTTAGGGCTTTAA
27178015 ATTGATAAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 16 0.67
30 8 0.33
ACGTcount: A:0.20, C:0.05, G:0.32, T:0.43
Consensus pattern (29 bp):
TTTAGGGCTTAAGGTTTAGGGCTTTAAGG
Found at i:27184639 original size:17 final size:17
Alignment explanation
Indices: 27184586--27184645 Score: 56
Period size: 17 Copynumber: 3.7 Consensus size: 17
27184576 TAATCGTTTT
*
27184586 AATATTAAATT-AATAA
1 AATATTAAATTAAATTA
*
27184602 AATACT--ATTAAGA-TA
1 AATATTAAATTAA-ATTA
*
27184617 AGTATTAAATTAAATTA
1 AATATTAAATTAAATTA
27184634 AATATTAAATTA
1 AATATTAAATTA
27184646 TTAAAATAAT
Statistics
Matches: 34, Mismatches: 5, Indels: 9
0.71 0.10 0.19
Matches are distributed among these distances:
14 3 0.09
15 6 0.18
16 7 0.21
17 18 0.53
ACGTcount: A:0.57, C:0.02, G:0.03, T:0.38
Consensus pattern (17 bp):
AATATTAAATTAAATTA
Found at i:27186134 original size:20 final size:21
Alignment explanation
Indices: 27186111--27186156 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
27186101 AAACATGGTT
*
27186111 GTGTGGCTA-TCCACACACCC
1 GTGTGGCTACCCCACACACCC
* *
27186131 GTGTAGCTACCCCACACACCT
1 GTGTGGCTACCCCACACACCC
27186152 GTGTG
1 GTGTG
27186157 CTCACTCGTA
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
20 8 0.38
21 13 0.62
ACGTcount: A:0.20, C:0.37, G:0.22, T:0.22
Consensus pattern (21 bp):
GTGTGGCTACCCCACACACCC
Found at i:27187796 original size:27 final size:27
Alignment explanation
Indices: 27187766--27188158 Score: 381
Period size: 27 Copynumber: 14.7 Consensus size: 27
27187756 TAATAAAGAG
* *
27187766 AAATTACCAAAATACCC-CCAGTTTGTA
1 AAATTACCGAAATACCCTCGA-TTTGTA
27187793 AAATTACCGAAATACGCC-CGATTTGTA
1 AAATTACCGAAATAC-CCTCGATTTGTA
*
27187820 AAATTACCGAAATACCCT-TAGTTTGTA
1 AAATTACCGAAATACCCTCGA-TTTGTA
27187847 AAATTACCGAAATACTCC-CGATTTGTA
1 AAATTACCGAAATAC-CCTCGATTTGTA
* * *
27187874 AAATTACCGAAATACCCT-TAATTGTG
1 AAATTACCGAAATACCCTCGATTTGTA
**
27187900 AAATTACTAAAATACCCTCGATTTGT-
1 AAATTACCGAAATACCCTCGATTTGTA
* * *
27187926 AAATTA-CTAAATA-CTTGCGATTTGTG
1 AAATTACCGAAATACCCT-CGATTTGTA
* * *
27187952 AAATTATCGAAACACGCTCGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
* * *
27187979 AAATTACTGAAACACCCTCAATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
** * *
27188006 AAATTATTGAAACACCCTCGATTTGTG
1 AAATTACCGAAATACCCTCGATTTGTA
*
27188033 AAATTATCGAAATACCCTCGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
* *
27188060 AAATTATCGAAATACCCTCAATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
* * * *
27188087 AATTTACCAAAACACCCCCGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
* * *
27188114 AAATTATCGAAATACCCT-TATAGTGTA
1 AAATTACCGAAATACCCTCGAT-TTGTA
*
27188141 AAATTACTGAAATACCCT
1 AAATTACCGAAATACCCT
27188159 TGTAGTGTAA
Statistics
Matches: 309, Mismatches: 45, Indels: 24
0.82 0.12 0.06
Matches are distributed among these distances:
24 2 0.01
25 13 0.04
26 40 0.13
27 246 0.80
28 8 0.03
ACGTcount: A:0.38, C:0.20, G:0.11, T:0.31
Consensus pattern (27 bp):
AAATTACCGAAATACCCTCGATTTGTA
Found at i:27188159 original size:27 final size:27
Alignment explanation
Indices: 27188110--27188198 Score: 108
Period size: 27 Copynumber: 3.3 Consensus size: 27
27188100 ACCCCCGATT
*
27188110 TGTAAAATTA-TCGAAATACCCTTATAG
1 TGTAAAATTACT-GAAATACCCTTGTAG
27188137 TGTAAAATTACTGAAATACCCTTGTAG
1 TGTAAAATTACTGAAATACCCTTGTAG
* * * *
27188164 TGTAAAGTAACTGACATACCCCTGTAG
1 TGTAAAATTACTGAAATACCCTTGTAG
*
27188191 GGTAAAAT
1 TGTAAAAT
27188199 GACTATTTTG
Statistics
Matches: 54, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
27 53 0.98
28 1 0.02
ACGTcount: A:0.38, C:0.16, G:0.16, T:0.30
Consensus pattern (27 bp):
TGTAAAATTACTGAAATACCCTTGTAG
Found at i:27191841 original size:15 final size:15
Alignment explanation
Indices: 27191821--27191849 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
27191811 TATGCATGCA
27191821 AAATATAAAAGACAG
1 AAATATAAAAGACAG
27191836 AAATATAAAAGACA
1 AAATATAAAAGACA
27191850 TGATAGTAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.69, C:0.07, G:0.10, T:0.14
Consensus pattern (15 bp):
AAATATAAAAGACAG
Found at i:27192693 original size:17 final size:17
Alignment explanation
Indices: 27192668--27192701 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
27192658 CAACAAGAAG
*
27192668 TTAGGGTTGTGGACGAT
1 TTAGAGTTGTGGACGAT
27192685 TTAGAGTTGTGGACGAT
1 TTAGAGTTGTGGACGAT
27192702 GAAGAAGTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.21, C:0.06, G:0.38, T:0.35
Consensus pattern (17 bp):
TTAGAGTTGTGGACGAT
Found at i:27193568 original size:17 final size:17
Alignment explanation
Indices: 27193546--27193593 Score: 60
Period size: 18 Copynumber: 2.8 Consensus size: 17
27193536 AATCACCACC
27193546 AATATTCTTTGGTTTAT
1 AATATTCTTTGGTTTAT
* *
27193563 AATATTCTGTTTGTTTTT
1 AATATTCT-TTGGTTTAT
*
27193581 TATATTCTTTGGT
1 AATATTCTTTGGT
27193594 ATGTAATTGC
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
17 12 0.46
18 14 0.54
ACGTcount: A:0.19, C:0.06, G:0.12, T:0.62
Consensus pattern (17 bp):
AATATTCTTTGGTTTAT
Found at i:27194587 original size:32 final size:32
Alignment explanation
Indices: 27194502--27194610 Score: 123
Period size: 32 Copynumber: 3.4 Consensus size: 32
27194492 TGGTTTTATT
* *
27194502 AAATGATAATAAATATCAATTTTTCATTTTGTGA
1 AAATGATAACAAATATCAA-CTTTCATTTTGT-A
*
27194536 AAA-GATAACAAAT-TACAACTTTAATTTTGTA
1 AAATGATAACAAATAT-CAACTTTCATTTTGTA
** *
27194567 AAATGATAACAAATATCAACTAGCATTTTGTT
1 AAATGATAACAAATATCAACTTTCATTTTGTA
27194599 AAATGATAACAA
1 AAATGATAACAA
27194611 TATTCCTTTA
Statistics
Matches: 65, Mismatches: 7, Indels: 8
0.81 0.09 0.10
Matches are distributed among these distances:
31 4 0.06
32 45 0.69
33 13 0.20
34 3 0.05
ACGTcount: A:0.47, C:0.09, G:0.08, T:0.36
Consensus pattern (32 bp):
AAATGATAACAAATATCAACTTTCATTTTGTA
Found at i:27197059 original size:41 final size:41
Alignment explanation
Indices: 27196997--27197099 Score: 125
Period size: 41 Copynumber: 2.5 Consensus size: 41
27196987 TTTCATTAAC
* * * *
27196997 GCTTCCAGCTAGAAGCATTTTACTTGTGACATGCAGAAAGA
1 GCTTCCAGCTGGAAGCATTTTACTGGTGACACGCAAAAAGA
** *
27197038 GCTTCCAGCTGGAAGTGTTTTACTGGTGACACGCAAAAAGC
1 GCTTCCAGCTGGAAGCATTTTACTGGTGACACGCAAAAAGA
* *
27197079 GCTTCCAACTGGATGCATTTT
1 GCTTCCAGCTGGAAGCATTTT
27197100 TTGGGTTTCT
Statistics
Matches: 51, Mismatches: 11, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
41 51 1.00
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.28
Consensus pattern (41 bp):
GCTTCCAGCTGGAAGCATTTTACTGGTGACACGCAAAAAGA
Found at i:27207092 original size:20 final size:20
Alignment explanation
Indices: 27207069--27207112 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
27207059 GCAAGTACTA
* *
27207069 ATACTTCTCGTGAAGTATTG
1 ATACTTCTCCTGAAGTATCG
*
27207089 ATACTTCTCCTTAAGTATCG
1 ATACTTCTCCTGAAGTATCG
27207109 ATAC
1 ATAC
27207113 CAATATGTAG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.27, C:0.20, G:0.14, T:0.39
Consensus pattern (20 bp):
ATACTTCTCCTGAAGTATCG
Found at i:27208067 original size:20 final size:23
Alignment explanation
Indices: 27208024--27208070 Score: 64
Period size: 23 Copynumber: 2.2 Consensus size: 23
27208014 TATTTTAGTG
27208024 GTTATAAACCATTATTTCTAACA
1 GTTATAAACCATTATTTCTAACA
*
27208047 GTTATAAACTATT-TTT-T-ACA
1 GTTATAAACCATTATTTCTAACA
27208067 GTTA
1 GTTA
27208071 CAAAAATATT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
20 7 0.30
21 1 0.04
22 3 0.13
23 12 0.52
ACGTcount: A:0.36, C:0.13, G:0.06, T:0.45
Consensus pattern (23 bp):
GTTATAAACCATTATTTCTAACA
Found at i:27208238 original size:96 final size:97
Alignment explanation
Indices: 27208063--27208257 Score: 311
Period size: 96 Copynumber: 2.0 Consensus size: 97
27208053 AACTATTTTT
* * ** *
27208063 TACAGTTACAAAAATATTAAATACTTTTTTTACCGTTATATGGAAATATTATCATTTTGCCTTTT
1 TACAGTTACAAAAATATTAAATACTTTTCTGACCGTTATATGGAAATATTATCATTTTGCCCCTG
27208128 CTAAATTATATTTTT-CCCTTCCAAAATCCTA
66 CTAAATTATATTTTTCCCCTTCCAAAATCCTA
27208159 TACAGTTACAAAAATATTAAATACTTTTCTGACCGTTATATGGAAATATTATCATTTTGCCCCTG
1 TACAGTTACAAAAATATTAAATACTTTTCTGACCGTTATATGGAAATATTATCATTTTGCCCCTG
** *
27208224 CTAGCTTATGTTTTTCCCCTTCCAAAATCCTA
66 CTAAATTATATTTTTCCCCTTCCAAAATCCTA
27208256 TA
1 TA
27208258 AATAGGAGGC
Statistics
Matches: 90, Mismatches: 8, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
96 72 0.80
97 18 0.20
ACGTcount: A:0.32, C:0.19, G:0.07, T:0.42
Consensus pattern (97 bp):
TACAGTTACAAAAATATTAAATACTTTTCTGACCGTTATATGGAAATATTATCATTTTGCCCCTG
CTAAATTATATTTTTCCCCTTCCAAAATCCTA
Found at i:27210306 original size:33 final size:33
Alignment explanation
Indices: 27210269--27210355 Score: 149
Period size: 33 Copynumber: 2.6 Consensus size: 33
27210259 CACACGGCCA
27210269 AGACACACGCCCGTGTTCTAGGCCACAC-AGCTG
1 AGACACACGCCCGTGTTCTAGGCCACACGA-CTG
27210302 AGACACACGCCCGTGTTCTAGGCCACACGACTG
1 AGACACACGCCCGTGTTCTAGGCCACACGACTG
27210335 AGACACACGCCCGTGTCTCTA
1 AGACACACGCCCGTGT-TCTA
27210356 CTCGTGTGCC
Statistics
Matches: 52, Mismatches: 0, Indels: 3
0.95 0.00 0.05
Matches are distributed among these distances:
33 47 0.90
34 5 0.10
ACGTcount: A:0.24, C:0.37, G:0.23, T:0.16
Consensus pattern (33 bp):
AGACACACGCCCGTGTTCTAGGCCACACGACTG
Found at i:27212049 original size:20 final size:20
Alignment explanation
Indices: 27212020--27212064 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
27212010 AGCACATGTA
* *
27212020 TTCATAAAATTTTAGAATTT
1 TTCATAAAATTTTACAACTT
*
27212040 TTCATCAAATTTTACAACTT
1 TTCATAAAATTTTACAACTT
27212060 TTCAT
1 TTCAT
27212065 TTTAGGTCCT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.36, C:0.13, G:0.02, T:0.49
Consensus pattern (20 bp):
TTCATAAAATTTTACAACTT
Found at i:27212157 original size:20 final size:22
Alignment explanation
Indices: 27212111--27212159 Score: 59
Period size: 20 Copynumber: 2.3 Consensus size: 22
27212101 TTGTAAAGGT
*
27212111 TATTTATCTATCAATAATCTTTC
1 TATTT-TCTATCAATAATATTTC
27212134 -ATTTTCTA-CAATAA-ATTTC
1 TATTTTCTATCAATAATATTTC
27212153 TATTTTC
1 TATTTTC
27212160 CAATATATAC
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
19 4 0.17
20 12 0.50
21 4 0.17
22 4 0.17
ACGTcount: A:0.31, C:0.16, G:0.00, T:0.53
Consensus pattern (22 bp):
TATTTTCTATCAATAATATTTC
Found at i:27214047 original size:27 final size:27
Alignment explanation
Indices: 27214009--27214064 Score: 103
Period size: 27 Copynumber: 2.1 Consensus size: 27
27213999 AATTGAATAG
*
27214009 ATGTTAGTTTTTGGAGAGATGCTATTA
1 ATGTTAGTTTTTGAAGAGATGCTATTA
27214036 ATGTTAGTTTTTGAAGAGATGCTATTA
1 ATGTTAGTTTTTGAAGAGATGCTATTA
27214063 AT
1 AT
27214065 AATGAGCTTG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.29, C:0.04, G:0.23, T:0.45
Consensus pattern (27 bp):
ATGTTAGTTTTTGAAGAGATGCTATTA
Found at i:27220796 original size:48 final size:48
Alignment explanation
Indices: 27220656--27220805 Score: 183
Period size: 48 Copynumber: 3.1 Consensus size: 48
27220646 GCTGGCTATC
* ** *
27220656 GGCATCGATGTGTGATCCCATGTAAGACCATGTCCGGGACATAGCATT
1 GGCATCGATATGTGATCCCATGTAAGACCATGTTTGGGACATGGCATT
** ** *
27220704 GGCATCGACCTACGATCCCATTTAAGACCATGTTTGGGACATGGCATT
1 GGCATCGATATGTGATCCCATGTAAGACCATGTTTGGGACATGGCATT
* * *
27220752 GGCATCGATATGTGATCCCATGTAAGACCATATTTAGGATATGGCATT
1 GGCATCGATATGTGATCCCATGTAAGACCATGTTTGGGACATGGCATT
*
27220800 CGCATC
1 GGCATC
27220806 CTACCATGTG
Statistics
Matches: 85, Mismatches: 17, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
48 85 1.00
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (48 bp):
GGCATCGATATGTGATCCCATGTAAGACCATGTTTGGGACATGGCATT
Found at i:27225422 original size:12 final size:12
Alignment explanation
Indices: 27225405--27225429 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
27225395 TTACAATAGT
27225405 ATATTTGCCAAC
1 ATATTTGCCAAC
27225417 ATATTTGCCAAC
1 ATATTTGCCAAC
27225429 A
1 A
27225430 AGTACAACAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.36, C:0.24, G:0.08, T:0.32
Consensus pattern (12 bp):
ATATTTGCCAAC
Done.