Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr02 99090824
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 99090824
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 317 characters in sequence are not A, C, G, or T
File 91 of 318
Found at i:27498509 original size:23 final size:24
Alignment explanation
Indices: 27498481--27498527 Score: 78
Period size: 24 Copynumber: 2.0 Consensus size: 24
27498471 TTATTCAAAC
27498481 CCCTTA-CCCCCATTTCAACGAAA
1 CCCTTACCCCCCATTTCAACGAAA
*
27498504 CCCTTACCCCCCATTTCTACGAAA
1 CCCTTACCCCCCATTTCAACGAAA
27498528 GACGAAACCT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
23 6 0.27
24 16 0.73
ACGTcount: A:0.28, C:0.45, G:0.04, T:0.23
Consensus pattern (24 bp):
CCCTTACCCCCCATTTCAACGAAA
Found at i:27503747 original size:21 final size:21
Alignment explanation
Indices: 27503708--27503747 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
27503698 ATAGTTGCAA
* *
27503708 ATTTAGGGTTCAAGTTTTGAG
1 ATTTAAGGTTCAAGGTTTGAG
*
27503729 ATTTAAGGTTCAGGGTTTG
1 ATTTAAGGTTCAAGGTTTG
27503748 GGTTTGGGTT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.23, C:0.05, G:0.30, T:0.42
Consensus pattern (21 bp):
ATTTAAGGTTCAAGGTTTGAG
Found at i:27503786 original size:53 final size:53
Alignment explanation
Indices: 27503706--27503812 Score: 169
Period size: 53 Copynumber: 2.0 Consensus size: 53
27503696 AAATAGTTGC
* * *
27503706 AAATTTAGGGTTCAAGTTTTGAGATTTAAGGTTCAGGGTTTGGGTTTGGGTTT
1 AAATTTAGGATTCAAGTTTTGAGATTTAAGGTTCAAGGATTGGGTTTGGGTTT
**
27503759 AAATTTAGGATTTGAGTTTTGAGATTTAAGGTTCAAGGATTGGGTTTGGGTTT
1 AAATTTAGGATTCAAGTTTTGAGATTTAAGGTTCAAGGATTGGGTTTGGGTTT
27503812 A
1 A
27503813 GGTTTGGGGT
Statistics
Matches: 49, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
53 49 1.00
ACGTcount: A:0.23, C:0.03, G:0.31, T:0.43
Consensus pattern (53 bp):
AAATTTAGGATTCAAGTTTTGAGATTTAAGGTTCAAGGATTGGGTTTGGGTTT
Found at i:27503874 original size:35 final size:33
Alignment explanation
Indices: 27503802--27503877 Score: 84
Period size: 35 Copynumber: 2.3 Consensus size: 33
27503792 CAAGGATTGG
*
27503802 GTTT-GGGTTTAGGTTTGGGGTTTAAGATTCAA
1 GTTTAGGGTTTAGGTTTGAGGTTTAAGATTCAA
* *
27503834 ATTTAGGGTTTAAGGGTTTGAGGTTTAAGGA-TCAT
1 GTTTAGGGTTT-A-GGTTTGAGGTTTAA-GATTCAA
27503869 GTTTAGGGT
1 GTTTAGGGT
27503878 CCAAAGGTTT
Statistics
Matches: 36, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
32 3 0.08
33 6 0.17
34 1 0.03
35 24 0.67
36 2 0.06
ACGTcount: A:0.21, C:0.03, G:0.34, T:0.42
Consensus pattern (33 bp):
GTTTAGGGTTTAGGTTTGAGGTTTAAGATTCAA
Found at i:27503887 original size:35 final size:35
Alignment explanation
Indices: 27503812--27503893 Score: 85
Period size: 35 Copynumber: 2.3 Consensus size: 35
27503802 GTTTGGGTTT
* **
27503812 AGGTTTGGGGTTTAAGATTCAAATTTAGGGTTTAA
1 AGGTTTGAGGTTTAAGATTCAAATTTAGGGTCCAA
* **
27503847 GGGTTTGAGGTTTAAGGA-TCATGTTTAGGGTCCAA
1 AGGTTTGAGGTTTAA-GATTCAAATTTAGGGTCCAA
*
27503882 AGGTTTAAGGTT
1 AGGTTTGAGGTT
27503894 ATAGGTTTGA
Statistics
Matches: 38, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
35 36 0.95
36 2 0.05
ACGTcount: A:0.26, C:0.05, G:0.32, T:0.38
Consensus pattern (35 bp):
AGGTTTGAGGTTTAAGATTCAAATTTAGGGTCCAA
Found at i:27503941 original size:7 final size:7
Alignment explanation
Indices: 27503931--27503956 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
27503921 TAAGGTTCAG
27503931 GATTCTA
1 GATTCTA
27503938 GATTCTA
1 GATTCTA
27503945 GATTCTA
1 GATTCTA
27503952 GATTC
1 GATTC
27503957 AGGGTAAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.27, C:0.15, G:0.15, T:0.42
Consensus pattern (7 bp):
GATTCTA
Found at i:27506636 original size:2 final size:2
Alignment explanation
Indices: 27506629--27506658 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
27506619 AAGTATGTGA
27506629 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
27506659 GTGTATTCTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:27508463 original size:28 final size:28
Alignment explanation
Indices: 27508402--27508499 Score: 108
Period size: 28 Copynumber: 3.5 Consensus size: 28
27508392 TCACAAATTG
** * *
27508402 GCACTAAGTGTGCGGGTTCAAATTATACA
1 GCACTAAGTGTGCAAGTTC-GATTATATA
*
27508431 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCAAGTTCGATTATATA
* *
27508459 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCAAGTTCGATTATAT-A
27508487 GCACTAAGTGTGC
1 GCACTAAGTGTGC
27508500 GGGCTTATTG
Statistics
Matches: 60, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
27 1 0.02
28 43 0.72
29 16 0.27
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCAAGTTCGATTATATA
Found at i:27513678 original size:10 final size:10
Alignment explanation
Indices: 27513663--27513687 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
27513653 CTTCATTTAA
27513663 TTTTTTGTCT
1 TTTTTTGTCT
27513673 TTTTTTGTCT
1 TTTTTTGTCT
27513683 TTTTT
1 TTTTT
27513688 AATCTTTAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.00, C:0.08, G:0.08, T:0.84
Consensus pattern (10 bp):
TTTTTTGTCT
Found at i:27514797 original size:3 final size:3
Alignment explanation
Indices: 27514789--27514836 Score: 78
Period size: 3 Copynumber: 16.0 Consensus size: 3
27514779 GGGAATTTGG
* *
27514789 TAT TAT TAT TAT TAT TAT TAT TAT TAC TAT TAC TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
27514837 AGCGGTTCAG
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.33, C:0.04, G:0.00, T:0.62
Consensus pattern (3 bp):
TAT
Found at i:27515032 original size:36 final size:36
Alignment explanation
Indices: 27514987--27515064 Score: 90
Period size: 36 Copynumber: 2.2 Consensus size: 36
27514977 AGACATGATG
*
27514987 TTAAA-AATTAAAAATTAAAT-TAAATTATATA-ATAT
1 TTAAATAATTAAAAA-TAAATATAAATAATATATAT-T
* *
27515022 TTAAATAATTAAATATAACTATAAATAATATATATT
1 TTAAATAATTAAAAATAAATATAAATAATATATATT
27515058 TTAAATA
1 TTAAATA
27515065 CTTTTTTATA
Statistics
Matches: 37, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
35 9 0.24
36 26 0.70
37 2 0.05
ACGTcount: A:0.58, C:0.01, G:0.00, T:0.41
Consensus pattern (36 bp):
TTAAATAATTAAAAATAAATATAAATAATATATATT
Found at i:27515044 original size:29 final size:27
Alignment explanation
Indices: 27514994--27515048 Score: 67
Period size: 29 Copynumber: 2.0 Consensus size: 27
27514984 ATGTTAAAAA
*
27514994 TTAAAAATTAAATTAAATTATATAATAT
1 TTAAAAATTAAATTAAACTATA-AATAT
27515022 TTAAATAATTAAA-TATAACTATAAATA
1 TTAAA-AATTAAATTA-AACTATAAATA
27515049 ATATATATTT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
28 11 0.46
29 13 0.54
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (27 bp):
TTAAAAATTAAATTAAACTATAAATAT
Found at i:27526649 original size:23 final size:23
Alignment explanation
Indices: 27526618--27526729 Score: 113
Period size: 23 Copynumber: 4.9 Consensus size: 23
27526608 GTTGATGAAT
*
27526618 AGTAAGCTCTATTGAGCTGAAAC
1 AGTAAGCTCTATCGAGCTGAAAC
*
27526641 GGTAAGCTCTATCGAGCTG-AAC
1 AGTAAGCTCTATCGAGCTGAAAC
*
27526663 AGTAAGCTC-ATACGAGCTAAAAC
1 AGTAAGCTCTAT-CGAGCTGAAAC
* *
27526686 AGTGAGCTCCAAT-GAGCTGAAAAC
1 AGTAAGCT-CTATCGAGCTG-AAAC
* *
27526710 AGTAAGCTCTTTCAAGCTGA
1 AGTAAGCTCTATCGAGCTGA
27526730 TAATGCCACT
Statistics
Matches: 73, Mismatches: 10, Indels: 12
0.77 0.11 0.13
Matches are distributed among these distances:
21 2 0.03
22 17 0.23
23 35 0.48
24 17 0.23
25 2 0.03
ACGTcount: A:0.35, C:0.21, G:0.22, T:0.22
Consensus pattern (23 bp):
AGTAAGCTCTATCGAGCTGAAAC
Found at i:27526680 original size:45 final size:45
Alignment explanation
Indices: 27526613--27526719 Score: 110
Period size: 45 Copynumber: 2.3 Consensus size: 45
27526603 CTTAAGTTGA
* * * * *
27526613 TGAATAGTAAGCTCTATTGAGCTGAAACGGTAAGCT-CTATCGAGC
1 TGAACAGTAAGCTCTATCGAGCTAAAACAGTAAGCTCCAAT-GAGC
*
27526658 TGAACAGTAAGCTC-ATACGAGCTAAAACAGTGAGCTCCAATGAGC
1 TGAACAGTAAGCTCTAT-CGAGCTAAAACAGTAAGCTCCAATGAGC
27526703 TGAAAACAGTAAGCTCT
1 TG--AACAGTAAGCTCT
27526720 TTCAAGCTGA
Statistics
Matches: 51, Mismatches: 6, Indels: 7
0.80 0.09 0.11
Matches are distributed among these distances:
44 2 0.04
45 34 0.67
46 3 0.06
47 12 0.24
ACGTcount: A:0.36, C:0.20, G:0.22, T:0.22
Consensus pattern (45 bp):
TGAACAGTAAGCTCTATCGAGCTAAAACAGTAAGCTCCAATGAGC
Found at i:27534833 original size:40 final size:40
Alignment explanation
Indices: 27534777--27534876 Score: 112
Period size: 40 Copynumber: 2.5 Consensus size: 40
27534767 GGATATAGCG
* * * *
27534777 ACTCGCTCAAAAGCCTTCGGGACATAGCCCGG-TTATAATA
1 ACTCGCACAAATGCCTTCGGGACATAACCCGGATT-TAAGA
* * **
27534817 GCTCGCACAAATGCCTTCGGGACTTAACCCGGATTTGGGA
1 ACTCGCACAAATGCCTTCGGGACATAACCCGGATTTAAGA
27534857 ACTCGCACAAATGCCTTCGG
1 ACTCGCACAAATGCCTTCGG
27534877 ATCTTAGTCC
Statistics
Matches: 50, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
40 48 0.96
41 2 0.04
ACGTcount: A:0.26, C:0.29, G:0.23, T:0.22
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACATAACCCGGATTTAAGA
Found at i:27535639 original size:2 final size:2
Alignment explanation
Indices: 27535632--27535657 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
27535622 ATGTGCAAAC
27535632 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
27535658 GCTAGAGCCG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:27542825 original size:40 final size:40
Alignment explanation
Indices: 27542740--27542892 Score: 139
Period size: 40 Copynumber: 3.8 Consensus size: 40
27542730 GGATATAGCG
* * * * ***
27542740 ACTCGCTCAAAAGCCTTCGGGACATAGCCCGGTTATAATA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATGGGA
* * *
27542780 GCTCGCACAAATGCCTTCGGGACTTAACCCGGATTTGGGA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATGGGA
* * **
27542820 ACTCGCACAAATGCCTT-TGGATCTTAGTCCGGATATGGTC
1 ACTCGCACAAATGCCTTCGGGA-CTTAGCCCGGATATGGGA
*
27542860 ACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
1 AC-TCGCACAAATGCCTTCGGGACTTAGCCCGGA
27542893 CATCATTTGA
Statistics
Matches: 90, Mismatches: 20, Indels: 6
0.78 0.17 0.05
Matches are distributed among these distances:
39 3 0.03
40 76 0.84
41 11 0.12
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.24
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATGGGA
Found at i:27543649 original size:2 final size:2
Alignment explanation
Indices: 27543601--27543630 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
27543591 ATGTGCAAAC
27543601 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
27543631 GCTAGACCCA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:27563407 original size:20 final size:20
Alignment explanation
Indices: 27563384--27563421 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
27563374 CACATCCAAA
*
27563384 TACAAAATTTTAAAAATCTT
1 TACAAAATATTAAAAATCTT
*
27563404 TACAAAATATTGAAAATC
1 TACAAAATATTAAAAATC
27563422 GCGAATAAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.11, G:0.03, T:0.34
Consensus pattern (20 bp):
TACAAAATATTAAAAATCTT
Found at i:27564412 original size:66 final size:68
Alignment explanation
Indices: 27564338--27564524 Score: 236
Period size: 71 Copynumber: 2.7 Consensus size: 68
27564328 TAGTACCACT
*
27564338 CATGCGACCTAAC-CGATTTGTC-T-CGTAGCTATCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAACAC-ATTTATCTTACGTAGCTATCTTGTCTACATGGTGTCCTTCACTTGGAAT
27564400 CACG
65 CACG
* *
27564404 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAAC-ACATTTATC-TT-ACGTAGCTATCTTGTCTACATGGTGTCCTTCACTTGGA
27564469 ATCACG
63 ATCACG
* * *
27564475 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGCCTACATGG
1 CATGCGACCTAAC-ACATTTATC-TT-ACGTAGCTATCTTGTCTACATGG
27564525 GATACATCTC
Statistics
Matches: 111, Mismatches: 4, Indels: 7
0.91 0.03 0.06
Matches are distributed among these distances:
66 12 0.11
67 6 0.05
68 1 0.01
69 1 0.01
71 91 0.82
ACGTcount: A:0.20, C:0.28, G:0.18, T:0.34
Consensus pattern (68 bp):
CATGCGACCTAACACATTTATCTTACGTAGCTATCTTGTCTACATGGTGTCCTTCACTTGGAATC
ACG
Found at i:27564448 original size:71 final size:71
Alignment explanation
Indices: 27564361--27564524 Score: 310
Period size: 71 Copynumber: 2.3 Consensus size: 71
27564351 CGATTTGTCT
*
27564361 CGTAGCTATCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
27564426 CTTTCA
66 CTTTCA
27564432 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
27564497 CTTTCA
66 CTTTCA
*
27564503 CGTAGCTCTCTTGCCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
27564525 GATACATCTC
Statistics
Matches: 91, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
71 91 1.00
ACGTcount: A:0.20, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:27564562 original size:71 final size:70
Alignment explanation
Indices: 27564361--27564558 Score: 231
Period size: 71 Copynumber: 2.8 Consensus size: 70
27564351 CGATTTGTCT
* * * * * *
27564361 CGTAGCTATCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGCCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
27564426 CTTTCA
65 CTTTCA
* * * * *
27564432 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGCCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
27564497 CTTTCA
65 CTTTCA
* *
27564503 CGTAGCTCTCTTGCCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGCCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
27564559 TACAAGGTGT
Statistics
Matches: 118, Mismatches: 8, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
68 22 0.19
69 1 0.01
70 1 0.01
71 94 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.33
Consensus pattern (70 bp):
CGTAGCTCTCTTGCCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:27574728 original size:29 final size:29
Alignment explanation
Indices: 27574693--27574766 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
27574683 GTTGTGAGAT
* *
27574693 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
27574722 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
27574751 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
27574767 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:27578511 original size:27 final size:26
Alignment explanation
Indices: 27578446--27578565 Score: 161
Period size: 27 Copynumber: 4.6 Consensus size: 26
27578436 CATGACAAAT
* *
27578446 AAAGAAAGCCTTTGTGGTATACT-TG
1 AAAGAAAGCCTTTGTGGCATAATATG
*
27578471 AAAGAAAGCATTTGTGGCATAATATG
1 AAAGAAAGCCTTTGTGGCATAATATG
*
27578497 AAAGAAAAGCCTTTGTGGCATAACATG
1 AAAG-AAAGCCTTTGTGGCATAATATG
*
27578524 AAAGAAAGCCTTTGTGGCAGAATATG
1 AAAGAAAGCCTTTGTGGCATAATATG
*
27578550 AAAGGAATGCCTTTGT
1 AAA-GAAAGCCTTTGT
27578566 AAAGCCCCAA
Statistics
Matches: 84, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
25 20 0.24
26 29 0.35
27 35 0.42
ACGTcount: A:0.38, C:0.12, G:0.24, T:0.27
Consensus pattern (26 bp):
AAAGAAAGCCTTTGTGGCATAATATG
Found at i:27578538 original size:53 final size:51
Alignment explanation
Indices: 27578446--27578565 Score: 168
Period size: 53 Copynumber: 2.3 Consensus size: 51
27578436 CATGACAAAT
* * *
27578446 AAAGAAAGCCTTTGTGGTATACTTGAAAGAAAGCATTTGTGGCATAATATG
1 AAAGAAAGCCTTTGTGGCATACATGAAAGAAAGCATTTGTGGCAGAATATG
*
27578497 AAAGAAAAGCCTTTGTGGCATAACATGAAAGAAAGCCTTTGTGGCAGAATATG
1 AAAG-AAAGCCTTTGTGGCAT-ACATGAAAGAAAGCATTTGTGGCAGAATATG
*
27578550 AAAGGAATGCCTTTGT
1 AAA-GAAAGCCTTTGT
27578566 AAAGCCCCAA
Statistics
Matches: 61, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
51 4 0.07
52 15 0.25
53 41 0.67
54 1 0.02
ACGTcount: A:0.38, C:0.12, G:0.24, T:0.27
Consensus pattern (51 bp):
AAAGAAAGCCTTTGTGGCATACATGAAAGAAAGCATTTGTGGCAGAATATG
Found at i:27582122 original size:13 final size:14
Alignment explanation
Indices: 27582091--27582122 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
27582081 TTATATATGA
27582091 ATTTTACTCATTGT
1 ATTTTACTCATTGT
27582105 A-TTTACTCA-TGT
1 ATTTTACTCATTGT
27582117 ATTTTA
1 ATTTTA
27582123 GTTTGTAATT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
12 4 0.24
13 12 0.71
14 1 0.06
ACGTcount: A:0.25, C:0.12, G:0.06, T:0.56
Consensus pattern (14 bp):
ATTTTACTCATTGT
Found at i:27592474 original size:49 final size:49
Alignment explanation
Indices: 27592419--27593612 Score: 2032
Period size: 49 Copynumber: 24.4 Consensus size: 49
27592409 TATTAAAATT
*
27592419 TGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGGTGAA
1 TGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
*
27592468 TGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
** *
27592517 TGTGAAAGTGTGCATATATGTGATAAGGCCTAATGGCCAATGTGATGAA
1 TGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
* *
27592566 TGTGAAAGTGTATGTATATGTGATAAGGCGTAATGGCCGATGTGATGAA
1 TGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
*
27592615 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
*
27592664 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
*
27592713 TGTGAAAGTGTGA-ATATATGTGATAAGGCCTAATGGCCAATGTGATGAA
1 TGTGAAAGTGT-ATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
*
27592762 TGTGAAAGTGT-TGTATATGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
* *
27592810 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAA
1 TGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
*
27592859 TGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
* *
27592908 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAA
1 TGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
* *
27592957 TGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCAATGTGATGAA
1 TGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
*
27593006 TGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
* *
27593055 TGTGAAAGTGTGTATATATGTGATAAGGCTTAATGGCCGATGTGATGAA
1 TGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
* *
27593104 TGTGAAAGTGTATGTATATGTGATAAGGCCTAACGGCCGATGTGATGAA
1 TGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
*
27593153 TGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
* *
27593202 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAA
1 TGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
*
27593251 TGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
* *
27593300 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAA
1 TGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
*
27593349 TGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
* *
27593398 TGTGAAAGTGTGTATATATGTGATAAGGCTTAATGGCCGATGTGATGAA
1 TGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
* *
27593447 TGTGAAAGTGTGTATATATGTGATAAGGCCTAACGGCCGATGTGATGAA
1 TGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
*
27593496 TGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
* *
27593545 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGACGTGATGAA
1 TGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
27593594 TGTGAAAGTGTATATATAT
1 TGTGAAAGTGTATATATAT
27593613 ATGTGGTAAA
Statistics
Matches: 1081, Mismatches: 61, Indels: 6
0.94 0.05 0.01
Matches are distributed among these distances:
48 45 0.04
49 1036 0.96
ACGTcount: A:0.31, C:0.08, G:0.30, T:0.31
Consensus pattern (49 bp):
TGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
Found at i:27593418 original size:27 final size:27
Alignment explanation
Indices: 27593388--27593470 Score: 70
Period size: 27 Copynumber: 3.3 Consensus size: 27
27593378 CTAATGGCCG
27593388 ATGTGATGAATGTGAAAGTGTGTATAT
1 ATGTGATGAATGTGAAAGTGTGTATAT
* * ***
27593415 ATGTGAT-AAGGCT-TAA-TG-G--CCG
1 ATGTGATGAATG-TGAAAGTGTGTATAT
27593437 ATGTGATGAATGTGAAAGTGTGTATAT
1 ATGTGATGAATGTGAAAGTGTGTATAT
27593464 ATGTGAT
1 ATGTGAT
27593471 AAGGCCTAAC
Statistics
Matches: 39, Mismatches: 10, Indels: 14
0.62 0.16 0.22
Matches are distributed among these distances:
22 8 0.21
23 5 0.13
24 3 0.08
25 3 0.08
26 5 0.13
27 15 0.38
ACGTcount: A:0.31, C:0.04, G:0.30, T:0.35
Consensus pattern (27 bp):
ATGTGATGAATGTGAAAGTGTGTATAT
Found at i:27595664 original size:40 final size:40
Alignment explanation
Indices: 27595616--27595936 Score: 561
Period size: 40 Copynumber: 8.0 Consensus size: 40
27595606 GAGAGTGATA
*
27595616 TATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATG
1 TATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGACG
*
27595656 TATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATG
1 TATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGACG
27595696 TATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGACG
1 TATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGACG
27595736 TATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGACG
1 TATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGACG
27595776 TATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGACG
1 TATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGACG
27595816 TATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGACG
1 TATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGACG
*
27595856 TATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATG
1 TATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGACG
* * * * * *
27595896 TATCCGGGCTAGGTCCCGAAGAGCAATCATGCTGGTGACG
1 TATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGACG
27595936 T
1 T
27595937 GTATTCGGGC
Statistics
Matches: 272, Mismatches: 9, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 272 1.00
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGACG
Found at i:27599668 original size:49 final size:49
Alignment explanation
Indices: 27599613--27600757 Score: 1968
Period size: 49 Copynumber: 23.4 Consensus size: 49
27599603 TATTAAAATT
* *
27599613 TGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGGTGAA
1 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
* *
27599662 TGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
* *
27599711 TGTGAAAGTGTGCATATATGTGATAAGGCCTAATGGCCAATGTGATGAA
1 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
* * *
27599760 TGTGAAAGTGTATGTATATGTGATAAGGCGTAATGGCCGATGTGATGAA
1 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
27599809 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
27599858 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
* * *
27599907 TGTGAAAGTGTGAATATATGTGATAAGGCCTAATGGACAATGTGATGAA
1 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
*
27599956 TGTGAAAGTGT-TGTATATGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
*
27600004 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAA
1 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
* *
27600053 TGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
*
27600102 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCCATGTGATGAA
1 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
* *
27600151 TGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
*
27600200 TGTGAAAGTGTGTATATATGTGATAAGGCTTAATGGCCGATGTGATGAA
1 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
*
27600249 TGTGAAAGTGTGTATATATGTGATAAGGCCTAACGGCCGATGTGATGAA
1 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
* *
27600298 TGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
*
27600347 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAA
1 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
* *
27600396 TGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
*
27600445 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAA
1 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
* *
27600494 TGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
*
27600543 TGTGAAAGTGTGTATATATGTGATAAGGCTTAATGGCCGATGTGATGAA
1 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
*
27600592 TGTGAAAGTGTGTATATATGTGATAAGGCCTAACGGCCGATGTGATGAA
1 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
* *
27600641 TGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
*
27600690 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGACGTGATGAA
1 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
*
27600739 TGTGAAAGTGTATATATAT
1 TGTGAAAGTGTGTATATAT
27600758 ATGTGGTAAA
Statistics
Matches: 1031, Mismatches: 64, Indels: 2
0.94 0.06 0.00
Matches are distributed among these distances:
48 44 0.04
49 987 0.96
ACGTcount: A:0.31, C:0.08, G:0.30, T:0.31
Consensus pattern (49 bp):
TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
Found at i:27600220 original size:27 final size:27
Alignment explanation
Indices: 27600190--27600272 Score: 70
Period size: 27 Copynumber: 3.3 Consensus size: 27
27600180 CTAATGGCCG
27600190 ATGTGATGAATGTGAAAGTGTGTATAT
1 ATGTGATGAATGTGAAAGTGTGTATAT
* * ***
27600217 ATGTGAT-AAGGCT-TAA-TG-G--CCG
1 ATGTGATGAATG-TGAAAGTGTGTATAT
27600239 ATGTGATGAATGTGAAAGTGTGTATAT
1 ATGTGATGAATGTGAAAGTGTGTATAT
27600266 ATGTGAT
1 ATGTGAT
27600273 AAGGCCTAAC
Statistics
Matches: 39, Mismatches: 10, Indels: 14
0.62 0.16 0.22
Matches are distributed among these distances:
22 8 0.21
23 5 0.13
24 3 0.08
25 3 0.08
26 5 0.13
27 15 0.38
ACGTcount: A:0.31, C:0.04, G:0.30, T:0.35
Consensus pattern (27 bp):
ATGTGATGAATGTGAAAGTGTGTATAT
Found at i:27600563 original size:27 final size:27
Alignment explanation
Indices: 27600533--27600615 Score: 70
Period size: 27 Copynumber: 3.3 Consensus size: 27
27600523 CTAATGGCCG
27600533 ATGTGATGAATGTGAAAGTGTGTATAT
1 ATGTGATGAATGTGAAAGTGTGTATAT
* * ***
27600560 ATGTGAT-AAGGCT-TAA-TG-G--CCG
1 ATGTGATGAATG-TGAAAGTGTGTATAT
27600582 ATGTGATGAATGTGAAAGTGTGTATAT
1 ATGTGATGAATGTGAAAGTGTGTATAT
27600609 ATGTGAT
1 ATGTGAT
27600616 AAGGCCTAAC
Statistics
Matches: 39, Mismatches: 10, Indels: 14
0.62 0.16 0.22
Matches are distributed among these distances:
22 8 0.21
23 5 0.13
24 3 0.08
25 3 0.08
26 5 0.13
27 15 0.38
ACGTcount: A:0.31, C:0.04, G:0.30, T:0.35
Consensus pattern (27 bp):
ATGTGATGAATGTGAAAGTGTGTATAT
Found at i:27607068 original size:40 final size:39
Alignment explanation
Indices: 27606903--27607086 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
27606893 AAATTGAATG
* * *
27606903 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
27606943 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
27606983 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
27607023 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
27607062 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
27607087 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:27607111 original size:80 final size:81
Alignment explanation
Indices: 27606943--27607131 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
27606933 GCTGGAAATT
* * * *
27606943 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
27607008 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
27607024 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
27607087 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
27607103 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
27607132 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:27615153 original size:40 final size:39
Alignment explanation
Indices: 27614988--27615171 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
27614978 AAATTGAATG
* * *
27614988 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
27615028 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
27615068 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
27615108 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
27615147 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
27615172 CTTGTGCGGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:27615154 original size:80 final size:79
Alignment explanation
Indices: 27615032--27615179 Score: 181
Period size: 80 Copynumber: 1.9 Consensus size: 79
27615022 GAAATTATAA
* * * *
27615032 CCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCATTCG
1 CCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCATT-G
27615097 TGCGAGTCATTCTAT
65 TGCGAGTCATTCTAT
* * * * * *
27615112 CCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGCCTTG
1 CCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGCATTG
27615176 TGCG
65 TGCG
27615180 GGTTACCATA
Statistics
Matches: 57, Mismatches: 10, Indels: 3
0.81 0.14 0.04
Matches are distributed among these distances:
79 6 0.11
80 51 0.89
ACGTcount: A:0.22, C:0.25, G:0.30, T:0.23
Consensus pattern (79 bp):
CCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCATTGT
GCGAGTCATTCTAT
Found at i:27620669 original size:39 final size:38
Alignment explanation
Indices: 27620610--27620759 Score: 156
Period size: 39 Copynumber: 3.8 Consensus size: 38
27620600 AACCGACGAT
* *
27620610 GCACAAATGCCTTCGGGTCTTAGCCCGGATTTAAAACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATAAAACTA
**
27620649 GCACGAATGCCTTCGGGTCTTAGCCCGGATATAGCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATAAAACTA
* ** *
27620688 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATATAA-AACTA
* * *
27620728 GCATAATTGTCTTCGGGGCTTAGCCCGGATAT
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATAT
27620760 CATTCAATTT
Statistics
Matches: 95, Mismatches: 14, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
38 2 0.02
39 63 0.66
40 30 0.32
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATATAAAACTA
Found at i:27624894 original size:40 final size:39
Alignment explanation
Indices: 27624841--27624977 Score: 154
Period size: 40 Copynumber: 3.5 Consensus size: 39
27624831 GGATATAACG
* *
27624841 ACTCGCTCAAATGCCTTCGGGACAAAGCCCGGTTATAGTA
1 ACTCGCACAAATGCCTTCGGGACTAAGCCCGGTT-TAGTA
*
27624881 ACTCGCACGAATGCCTTCGGGACTTAA-CCCGGGTTTAGTA
1 ACTCGCACAAATGCCTTCGGGAC-TAAGCCC-GGTTTAGTA
* *
27624921 ACTCGCACAAATGCCTTCGGG-CTTAG-CCGGATTTATTA
1 ACTCGCACAAATGCCTTCGGGACTAAGCCCGG-TTTAGTA
*
27624959 ACTCGCCACGAATGCCTTC
1 ACTCG-CACAAATGCCTTC
27624978 AGATCTTAGT
Statistics
Matches: 85, Mismatches: 7, Indels: 11
0.83 0.07 0.11
Matches are distributed among these distances:
37 2 0.02
38 15 0.18
39 13 0.15
40 49 0.58
41 6 0.07
ACGTcount: A:0.24, C:0.29, G:0.22, T:0.25
Consensus pattern (39 bp):
ACTCGCACAAATGCCTTCGGGACTAAGCCCGGTTTAGTA
Found at i:27626798 original size:40 final size:40
Alignment explanation
Indices: 27626738--27626920 Score: 212
Period size: 40 Copynumber: 4.6 Consensus size: 40
27626728 TATTCGAATG
*
27626738 ATATCCGGGCTAAG-TCCCGAAGGCTTTTATGCTAGTGACT
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTATGCTAGTGACT
* * *
27626778 ATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAG-TGACT
* * * * *
27626818 ATATCCAGGCTAAGA-CCGAAGGCATTTGTTCTAGCGATT
1 ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAGTGACT
*
27626857 ATATCCGGGCTAAG-TCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTATGCTAGTGACT
*
27626897 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGATCCGAAGGC
27626921 CTTGTGCGAG
Statistics
Matches: 120, Mismatches: 17, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
38 1 0.01
39 31 0.26
40 85 0.71
41 3 0.03
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAGTGACT
Found at i:27626938 original size:79 final size:80
Alignment explanation
Indices: 27626738--27626956 Score: 250
Period size: 79 Copynumber: 2.8 Consensus size: 80
27626728 TATTCGAATG
* * * * *
27626738 ATATCCGGGCTAAGTCCCGAAGGCTTTTATGCTAGTGACTATATCCGGACTAAGAT-CCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATATCCGGGCTAAG-TCCCGAAGGC
* *
27626802 ATTTGTGCGAGTTGCT
65 ATTTATGCGAGTTGCC
* * *
27626818 ATATCCAGGCTAAGA-CCGAAGGCATTTGTTCTAGCGATTATATCCGGGCTAAGTCCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATATCCGGGCTAAGTCCCGAAGGCA
*
27626882 TTTATGCTAG-TGACC
66 TTTATGCGAGTTG-CC
* * * *
27626897 ATATCCGGGCTAAGACCCGAAGGC-CTTGTGCGAGTGGTTATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATATCCGGGCTAAGTCCCGAAG
27626957 ATACTTGGGT
Statistics
Matches: 118, Mismatches: 18, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
78 17 0.14
79 80 0.68
80 21 0.18
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATATCCGGGCTAAGTCCCGAAGGCA
TTTATGCGAGTTGCC
Found at i:27630398 original size:40 final size:40
Alignment explanation
Indices: 27630334--27630648 Score: 299
Period size: 40 Copynumber: 7.8 Consensus size: 40
27630324 TTATTGAATA
* * * *
27630334 ATTGCACTTACATGCCTCTGTTTGTACTTCGGTACCCTTG
1 ATTGCACTTACGTGCCCCTATTTGTACTTCGGTACCCCTG
*
27630374 ATTGCAC-TATTGTGCCCCTATTTGTACTTCGGTACCCCTG
1 ATTGCACTTA-CGTGCCCCTATTTGTACTTCGGTACCCCTG
* * ** * *
27630414 ATTGCACTTGCATGCCATTGTTTGTACTTCGGTACCCCTA
1 ATTGCACTTACGTGCCCCTATTTGTACTTCGGTACCCCTG
* * * ** *
27630454 ACTGCCCTTACGTGCCCCTGTTTGTACTTCAATACCTCTG
1 ATTGCACTTACGTGCCCCTATTTGTACTTCGGTACCCCTG
* * *
27630494 ATTGCACTTAGGTGCCCCTATTTGTACTTCAGTACCCCTA
1 ATTGCACTTACGTGCCCCTATTTGTACTTCGGTACCCCTG
***
27630534 ATTGCACTTACGTGCCCCTATTTGTACTTTAATACCCCTG
1 ATTGCACTTACGTGCCCCTATTTGTACTTCGGTACCCCTG
* * * * *
27630574 GTTGCACTTACATGCCCCTGTTTGTACTTTGATACCCCTTG
1 ATTGCACTTACGTGCCCCTATTTGTACTTCGGTACCCC-TG
* * * * * *
27630615 GTTGCACTTCCATGCCCCTAGTTATACTTTGGTA
1 ATTGCACTTACGTGCCCCTATTTGTACTTCGGTA
27630649 ACTCTAAAAC
Statistics
Matches: 230, Mismatches: 42, Indels: 5
0.83 0.15 0.02
Matches are distributed among these distances:
39 2 0.01
40 196 0.85
41 32 0.14
ACGTcount: A:0.17, C:0.30, G:0.16, T:0.37
Consensus pattern (40 bp):
ATTGCACTTACGTGCCCCTATTTGTACTTCGGTACCCCTG
Found at i:27630422 original size:20 final size:20
Alignment explanation
Indices: 27630359--27630542 Score: 72
Period size: 20 Copynumber: 9.2 Consensus size: 20
27630349 CTCTGTTTGT
*
27630359 ACTTCGGTACCCTTGATTGC
1 ACTTCGGTACCCCTGATTGC
* * *
27630379 ACTAT-TGTGCCCCT-ATTTGT
1 ACT-TCGGTACCCCTGA-TTGC
27630399 ACTTCGGTACCCCTGATTGC
1 ACTTCGGTACCCCTGATTGC
* * ** * *
27630419 ACTT-GCATGCCATTGTTTGT
1 ACTTCG-GTACCCCTGATTGC
* *
27630439 ACTTCGGTACCCCTAACTGC
1 ACTTCGGTACCCCTGATTGC
* * * *
27630459 CCTTAC-GTGCCCCTGTTTGT
1 ACTT-CGGTACCCCTGATTGC
** *
27630479 ACTTCAATACCTCTGATTGC
1 ACTTCGGTACCCCTGATTGC
* * *
27630499 ACTTAGGTGCCCCT-ATTTGT
1 ACTTCGGTACCCCTGA-TTGC
* *
27630519 ACTTCAGTACCCCTAATTGC
1 ACTTCGGTACCCCTGATTGC
27630539 ACTT
1 ACTT
27630543 ACGTGCCCCT
Statistics
Matches: 111, Mismatches: 43, Indels: 20
0.64 0.25 0.11
Matches are distributed among these distances:
19 5 0.05
20 101 0.91
21 5 0.05
ACGTcount: A:0.17, C:0.30, G:0.16, T:0.36
Consensus pattern (20 bp):
ACTTCGGTACCCCTGATTGC
Found at i:27630469 original size:80 final size:80
Alignment explanation
Indices: 27630334--27630612 Score: 353
Period size: 80 Copynumber: 3.5 Consensus size: 80
27630324 TTATTGAATA
* * * *
27630334 ATTGCACTTACATGCCTCTGTTTGTACTTCGGTACCCTTGATTGCAC-TATTGTGCCCCTATTTG
1 ATTGCACTTACATGCCCCTGTTTGTACTTCGGTACCCCTAATTGCACTTA-CGTGCCCCTATTTG
**
27630398 TACTTCGGTACCCCTG
65 TACTTCAATACCCCTG
* ** * * *
27630414 ATTGCACTTGCATGCCATTGTTTGTACTTCGGTACCCCTAACTGCCCTTACGTGCCCCTGTTTGT
1 ATTGCACTTACATGCCCCTGTTTGTACTTCGGTACCCCTAATTGCACTTACGTGCCCCTATTTGT
*
27630479 ACTTCAATACCTCTG
66 ACTTCAATACCCCTG
** * *
27630494 ATTGCACTTAGGTGCCCCTATTTGTACTTCAGTACCCCTAATTGCACTTACGTGCCCCTATTTGT
1 ATTGCACTTACATGCCCCTGTTTGTACTTCGGTACCCCTAATTGCACTTACGTGCCCCTATTTGT
*
27630559 ACTTTAATACCCCTG
66 ACTTCAATACCCCTG
* * *
27630574 GTTGCACTTACATGCCCCTGTTTGTACTTTGATACCCCT
1 ATTGCACTTACATGCCCCTGTTTGTACTTCGGTACCCCT
27630613 TGGTTGCACT
Statistics
Matches: 167, Mismatches: 31, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
80 165 0.99
81 2 0.01
ACGTcount: A:0.17, C:0.30, G:0.16, T:0.37
Consensus pattern (80 bp):
ATTGCACTTACATGCCCCTGTTTGTACTTCGGTACCCCTAATTGCACTTACGTGCCCCTATTTGT
ACTTCAATACCCCTG
Found at i:27630558 original size:120 final size:120
Alignment explanation
Indices: 27630336--27630622 Score: 335
Period size: 120 Copynumber: 2.4 Consensus size: 120
27630326 ATTGAATAAT
* ** *
27630336 TGCACTTACATGCCTCTGTTTGTACTTCGGTACCCTTGATTGCACTATTGTGCCCCTATTTGTAC
1 TGCACTTACATGCCCCTGTTTGTACTTCAATACCCTTGATTGCACTATGGTGCCCCTATTTGTAC
* * * * * **
27630401 TTCGGTACCCCTGATTGCACTTGCATGCCATTGTTTGTACTTCGGTACCCCTAAC
66 TTCAGTACCCCTAATTGCACTTACATGCCACTATTTGTACTTCAATACCCCTAAC
* *
27630456 TGCCCTTACGTGCCCCTGTTTGTACTTCAATA-CCTCTGATTGCACT-TAGGTGCCCCTATTTGT
1 TGCACTTACATGCCCCTGTTTGTACTTCAATACCCT-TGATTGCACTAT-GGTGCCCCTATTTGT
* * * ***
27630519 ACTTCAGTACCCCTAATTGCACTTACGTGCCCCTATTTGTACTTTAATACCCCTGGT
64 ACTTCAGTACCCCTAATTGCACTTACATGCCACTATTTGTACTTCAATACCCCTAAC
** *
27630576 TGCACTTACATGCCCCTGTTTGTACTTTGATACCCCTTGGTTGCACT
1 TGCACTTACATGCCCCTGTTTGTACTTCAATA-CCCTTGATTGCACT
27630623 TCCATGCCCC
Statistics
Matches: 139, Mismatches: 24, Indels: 7
0.82 0.14 0.04
Matches are distributed among these distances:
119 4 0.03
120 123 0.88
121 9 0.06
122 3 0.02
ACGTcount: A:0.16, C:0.30, G:0.16, T:0.37
Consensus pattern (120 bp):
TGCACTTACATGCCCCTGTTTGTACTTCAATACCCTTGATTGCACTATGGTGCCCCTATTTGTAC
TTCAGTACCCCTAATTGCACTTACATGCCACTATTTGTACTTCAATACCCCTAAC
Found at i:27630562 original size:20 final size:20
Alignment explanation
Indices: 27630460--27630602 Score: 78
Period size: 20 Copynumber: 7.2 Consensus size: 20
27630450 CCTAACTGCC
*
27630460 CTTACGTGCCCCTGTTTGTA
1 CTTACGTGCCCCTATTTGTA
* * * *
27630480 CTT-CAATACCTCTGA-TTGCA
1 CTTAC-GTGCCCCT-ATTTGTA
*
27630500 CTTAGGTGCCCCTATTTGTA
1 CTTACGTGCCCCTATTTGTA
* * *
27630520 CTT-CAGTACCCCTAATTGCA
1 CTTAC-GTGCCCCTATTTGTA
27630540 CTTACGTGCCCCTATTTGTA
1 CTTACGTGCCCCTATTTGTA
* * ** *
27630560 CTTTA-ATACCCCTGGTTGCA
1 C-TTACGTGCCCCTATTTGTA
* *
27630580 CTTACATGCCCCTGTTTGTA
1 CTTACGTGCCCCTATTTGTA
27630600 CTT
1 CTT
27630603 TGATACCCCT
Statistics
Matches: 90, Mismatches: 25, Indels: 16
0.69 0.19 0.12
Matches are distributed among these distances:
19 5 0.06
20 81 0.90
21 4 0.04
ACGTcount: A:0.17, C:0.30, G:0.15, T:0.38
Consensus pattern (20 bp):
CTTACGTGCCCCTATTTGTA
Found at i:27630632 original size:21 final size:20
Alignment explanation
Indices: 27630535--27630633 Score: 74
Period size: 20 Copynumber: 4.9 Consensus size: 20
27630525 GTACCCCTAA
* **
27630535 TTGCACTTACGTGCCCCTAT
1 TTGCACTTACATGCCCCTGG
* *
27630555 TTGTACTTTA-ATACCCCTGG
1 TTGCAC-TTACATGCCCCTGG
*
27630575 TTGCACTTACATGCCCCTGT
1 TTGCACTTACATGCCCCTGG
* ** *
27630595 TTGTACTTTGATACCCCTTGG
1 TTGCACTTACATGCCCC-TGG
*
27630616 TTGCACTTCCATGCCCCT
1 TTGCACTTACATGCCCCT
27630634 AGTTATACTT
Statistics
Matches: 59, Mismatches: 17, Indels: 6
0.72 0.21 0.07
Matches are distributed among these distances:
19 3 0.05
20 38 0.64
21 18 0.31
ACGTcount: A:0.15, C:0.32, G:0.15, T:0.37
Consensus pattern (20 bp):
TTGCACTTACATGCCCCTGG
Found at i:27631102 original size:17 final size:17
Alignment explanation
Indices: 27631082--27631114 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
27631072 TATATTATGG
27631082 ATGATCTTATATGTAAC
1 ATGATCTTATATGTAAC
*
27631099 ATGATGTTATATGTAA
1 ATGATCTTATATGTAA
27631115 AAAGAGATCG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.36, C:0.06, G:0.15, T:0.42
Consensus pattern (17 bp):
ATGATCTTATATGTAAC
Found at i:27635087 original size:64 final size:64
Alignment explanation
Indices: 27635006--27635189 Score: 187
Period size: 67 Copynumber: 2.8 Consensus size: 64
27634996 AGACATTATG
* * *
27635006 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATCTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * *
27635070 ATGTAGCTAGGTCGCATGCGTGGCT-CTAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGA
1 ATGTAGCTAGGTCGCATGGGT-GATACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGA
27635134 TAA
62 TAA
* * * *
27635137 AT-TGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT-GTACAAGAGAGC
1 ATGTAGCTAGGTCGCATGGGTGATACT-ATGTGTACACCATGTAG-ACAAGAGAGC
27635190 CAAACTCTAT
Statistics
Matches: 99, Mismatches: 14, Indels: 15
0.77 0.11 0.12
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 24 0.24
65 4 0.04
66 19 0.19
67 32 0.32
ACGTcount: A:0.29, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:27646184 original size:43 final size:42
Alignment explanation
Indices: 27646087--27646213 Score: 141
Period size: 43 Copynumber: 3.0 Consensus size: 42
27646077 AGGGTTGCTA
* * * *
27646087 AGATTACGTGTAGGACCATATATGGGATATGACATTGATATG
1 AGATTACATGTAAGACCATATATGGGATATGGCATTGATACG
* *
27646129 AGACTT-CATGTAAGACCATAGT-TGGGCTATTGGCATTTATACG
1 AGA-TTACATGTAAGACCATA-TATGGGATA-TGGCATTGATACG
* *
27646172 AGATTACATGTAAGACCATATCTGGGATATGGCATTGGTACG
1 AGATTACATGTAAGACCATATATGGGATATGGCATTGATACG
27646214 GTACTGTGTG
Statistics
Matches: 71, Mismatches: 9, Indels: 10
0.79 0.10 0.11
Matches are distributed among these distances:
42 35 0.49
43 36 0.51
ACGTcount: A:0.31, C:0.13, G:0.25, T:0.31
Consensus pattern (42 bp):
AGATTACATGTAAGACCATATATGGGATATGGCATTGATACG
Found at i:27647856 original size:40 final size:40
Alignment explanation
Indices: 27647811--27647978 Score: 207
Period size: 40 Copynumber: 4.2 Consensus size: 40
27647801 CGGAATACAA
27647811 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
* * * *
27647851 CCGGATATAACGACTCGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
* **
27647891 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
* *
27647931 CCGGATA-AAGTCACTA-GCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAA-CCAC-ACGCACGAA-TGCCTTCGGGTCTTAGC
27647971 CCGGATAT
1 CCGGATAT
27647979 CATTCAATTG
Statistics
Matches: 112, Mismatches: 12, Indels: 7
0.85 0.09 0.05
Matches are distributed among these distances:
39 4 0.04
40 108 0.96
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
Found at i:27647951 original size:80 final size:80
Alignment explanation
Indices: 27647811--27647978 Score: 241
Period size: 80 Copynumber: 2.1 Consensus size: 80
27647801 CGGAATACAA
* *
27647811 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTCGCACAAATG
1 CCGGATATAACAACACGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTAGCACAAATG
*
27647876 CCTTCGGGTATTAGC
66 CCTTCGGGTATTAAC
** *
27647891 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATA-AA-GTCACTAGCACAAT
1 CCGGATATAACAACACGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACG--ACTAGCACAAA
*
27647954 TGCCTTCGGGTCTTAAC
64 TGCCTTCGGGTATTAAC
27647971 CCGGATAT
1 CCGGATAT
27647979 CATTCAATTG
Statistics
Matches: 79, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
78 1 0.01
79 2 0.03
80 76 0.96
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.23
Consensus pattern (80 bp):
CCGGATATAACAACACGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTAGCACAAATG
CCTTCGGGTATTAAC
Found at i:27657391 original size:46 final size:46
Alignment explanation
Indices: 27657213--27657478 Score: 188
Period size: 46 Copynumber: 5.7 Consensus size: 46
27657203 TTGCGTGAGC
* * * *
27657213 CAGTGTAAGA-CATGTCTGGGACATGCATCGAC-C-ATATTATGAGAGC
1 CAGTGTAAGACCATGTCTGGGACATGCATCGGCTCGAGA-TGT-A-AGT
* * * *
27657259 CAGTGTAAGACCATGTTTGGGACATGGCATCGACATTGAGA--CAAGT
1 CAGTGTAAGACCATGTCTGGGACAT-GCATCGGC-TCGAGATGTAAGT
* * * * *
27657305 GCTAGTGTGAGA-CATGTCTAGGACATGTATTAGCCTCGAGATGTAAGT
1 -C-AGTGTAAGACCATGTCTGGGACATGCA-TCGGCTCGAGATGTAAGT
*
27657353 CAGCGTAAGA-CATGTCTGGGACATGCATCGGCTACGAGATG-ATAGT
1 CAGTGTAAGACCATGTCTGGGACATGCATCGGCT-CGAGATGTA-AGT
* * * * * *
27657399 TAGTGTAAGACCATGTCTGGGACATGGATCGACTTGAGATGTGAGC
1 CAGTGTAAGACCATGTCTGGGACATGCATCGGCTCGAGATGTAAGT
*
27657445 CAGTGTAAGACCGTGTCTGGGACATGGCATCGGC
1 CAGTGTAAGACCATGTCTGGGACAT-GCATCGGC
27657479 ACCTTACCCA
Statistics
Matches: 175, Mismatches: 30, Indels: 29
0.75 0.13 0.12
Matches are distributed among these distances:
45 5 0.03
46 90 0.51
47 58 0.33
48 20 0.11
51 2 0.01
ACGTcount: A:0.27, C:0.18, G:0.30, T:0.24
Consensus pattern (46 bp):
CAGTGTAAGACCATGTCTGGGACATGCATCGGCTCGAGATGTAAGT
Found at i:27657422 original size:93 final size:93
Alignment explanation
Indices: 27657256--27657478 Score: 231
Period size: 93 Copynumber: 2.4 Consensus size: 93
27657246 ATATTATGAG
* * * * * *
27657256 AGCCAGTGTAAGACCATGTTTGGGACATGGCATCGAC-ATTGAGA-CA-AGTGCTAGTGTGAGAC
1 AGCCAGCGTAAGACCATGTCTGGGACATGGCATCGGCTA-CGAGATGATAGT--TAGTGTAAGAC
* *
27657318 ATGTCTAGGACATGTATTAGCCTCGAGATGTA
63 ATGTCTAGGACATGGA-TAGACTCGAGATGTA
*
27657350 AGTCAGCGTAAGA-CATGTCTGGGACAT-GCATCGGCTACGAGATGATAGTTAGTGTAAGACCAT
1 AGCCAGCGTAAGACCATGTCTGGGACATGGCATCGGCTACGAGATGATAGTTAGTGTAAGA-CAT
* * * *
27657413 GTCTGGGACATGGATCGACTTGAGATGTG
65 GTCTAGGACATGGATAGACTCGAGATGTA
* *
27657442 AGCCAGTGTAAGACCGTGTCTGGGACATGGCATCGGC
1 AGCCAGCGTAAGACCATGTCTGGGACATGGCATCGGC
27657479 ACCTTACCCA
Statistics
Matches: 107, Mismatches: 16, Indels: 12
0.79 0.12 0.09
Matches are distributed among these distances:
92 42 0.39
93 43 0.40
94 22 0.21
ACGTcount: A:0.27, C:0.18, G:0.31, T:0.24
Consensus pattern (93 bp):
AGCCAGCGTAAGACCATGTCTGGGACATGGCATCGGCTACGAGATGATAGTTAGTGTAAGACATG
TCTAGGACATGGATAGACTCGAGATGTA
Found at i:27665540 original size:30 final size:30
Alignment explanation
Indices: 27665506--27665566 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
27665496 TTCCCGAGCC
*
27665506 TAGGGGTAAAAGTGTAAATATGCAAAAGTT
1 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
* * * *
27665536 TAGGGGCAAAATTGTAATTTTTCAAAAGTT
1 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
27665566 T
1 T
27665567 GAGTTAAGGA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.39, C:0.05, G:0.23, T:0.33
Consensus pattern (30 bp):
TAGGGGCAAAAGTGTAAATATGCAAAAGTT
Found at i:27671924 original size:49 final size:49
Alignment explanation
Indices: 27671843--27672051 Score: 350
Period size: 49 Copynumber: 4.3 Consensus size: 49
27671833 CCCTTCGGGA
* * * * * *
27671843 CTTATCACAT-T-TATACACTTCCACATCCATCACGTTGGCCACTAGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
27671890 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
27671939 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
27671988 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
27672037 CTTATCACATATATA
1 CTTATCACATATATA
27672052 TATCTCATAC
Statistics
Matches: 154, Mismatches: 6, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
47 10 0.06
48 1 0.01
49 143 0.93
ACGTcount: A:0.30, C:0.31, G:0.08, T:0.31
Consensus pattern (49 bp):
CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:27675664 original size:40 final size:40
Alignment explanation
Indices: 27675619--27675717 Score: 155
Period size: 40 Copynumber: 2.5 Consensus size: 40
27675609 CCAGCATGAT
*
27675619 TGCTCTTCGGGACCTA-TCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACCTAGT-CCGGATACATCACTAGCACGAA
*
27675659 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACCTAGTCCGGATACATCACTAGCACGAA
*
27675699 TGCTCTTCGGAACTTAGTC
1 TGCTCTTCGGAACCTAGTC
27675718 TTCGAAACTT
Statistics
Matches: 56, Mismatches: 2, Indels: 2
0.93 0.03 0.03
Matches are distributed among these distances:
40 55 0.98
41 1 0.02
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.26
Consensus pattern (40 bp):
TGCTCTTCGGAACCTAGTCCGGATACATCACTAGCACGAA
Found at i:27675721 original size:14 final size:14
Alignment explanation
Indices: 27675702--27675731 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
27675692 GCACGAATGC
*
27675702 TCTTCGGAACTTAG
1 TCTTCGAAACTTAG
27675716 TCTTCGAAACTTAG
1 TCTTCGAAACTTAG
27675730 TC
1 TC
27675732 CGGATATGTC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.23, C:0.23, G:0.17, T:0.37
Consensus pattern (14 bp):
TCTTCGAAACTTAG
Found at i:27675744 original size:54 final size:54
Alignment explanation
Indices: 27675662--27675771 Score: 193
Period size: 54 Copynumber: 2.0 Consensus size: 54
27675652 GCACGAATGC
*
27675662 TCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAG
1 TCTTCGAAACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAG
**
27675716 TCTTCGAAACTTAGTCCGGATATGTCACTAGCACGAATGCTCTTCGGAACTTAG
1 TCTTCGAAACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAG
27675770 TC
1 TC
27675772 CGGATACGTC
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
54 53 1.00
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.29
Consensus pattern (54 bp):
TCTTCGAAACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAG
Found at i:27675771 original size:40 final size:40
Alignment explanation
Indices: 27675716--27675904 Score: 333
Period size: 40 Copynumber: 4.7 Consensus size: 40
27675706 CGGAACTTAG
* **
27675716 TCTTCGAAACTTAGTCCGGATATGTCACTAGCACGAATGC
1 TCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATGC
*
27675756 TCTTCGGAACTTAGTCCGGATACGTCACTAGCACGAATGC
1 TCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATGC
27675796 TCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATGC
1 TCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATGC
27675836 TCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATGC
1 TCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATGC
*
27675876 TCTTCGGAACTTAGTCCGGATATATCACT
1 TCTTCGGAACTTAGTCCGGATACATCACT
27675905 CTCAATTCTC
Statistics
Matches: 145, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 145 1.00
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.27
Consensus pattern (40 bp):
TCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATGC
Found at i:27675843 original size:134 final size:134
Alignment explanation
Indices: 27675603--27675851 Score: 428
Period size: 134 Copynumber: 1.9 Consensus size: 134
27675593 GCCCGAATAC
* * *
27675603 ATGTCACCAGCATGATTGCTCTTCGGGACCTATCCCGGATACATCACTAGCACGAATGCTCTTCG
1 ATGTCACCAGCACGAATGCTCTTCGGAACCTATCCCGGATACATCACTAGCACGAATGCTCTTCG
27675668 GAACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGTCTTCGAAACTTAGTCC
66 GAACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGTCTTCGAAACTTAGTCC
27675733 GGAT
131 GGAT
* * *
27675737 ATGTCACTAGCACGAATGCTCTTCGGAACTTAGT-CCGGATACGTCACTAGCACGAATGCTCTTC
1 ATGTCACCAGCACGAATGCTCTTCGGAACCTA-TCCCGGATACATCACTAGCACGAATGCTCTTC
27675801 GGAACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGTC
65 GGAACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGTC
27675852 CGGATACATC
Statistics
Matches: 108, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
134 107 0.99
135 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.20, T:0.27
Consensus pattern (134 bp):
ATGTCACCAGCACGAATGCTCTTCGGAACCTATCCCGGATACATCACTAGCACGAATGCTCTTCG
GAACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGTCTTCGAAACTTAGTCC
GGAT
Found at i:27678079 original size:49 final size:49
Alignment explanation
Indices: 27677998--27678157 Score: 252
Period size: 49 Copynumber: 3.3 Consensus size: 49
27677988 CCCTTCGGGA
* * * * * *
27677998 CTTATCACAT-T-TATACACTTCCACATCCATCACGTTGGCCACTAGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
27678045 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
27678094 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
27678143 CTTATCACATATATA
1 CTTATCACATATATA
27678158 TATCTCATAC
Statistics
Matches: 105, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
47 10 0.10
48 1 0.01
49 94 0.90
ACGTcount: A:0.30, C:0.31, G:0.08, T:0.31
Consensus pattern (49 bp):
CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:27687408 original size:60 final size:59
Alignment explanation
Indices: 27687323--27687438 Score: 146
Period size: 60 Copynumber: 1.9 Consensus size: 59
27687313 GGCTGTTACA
27687323 TTTCCTGTCCAAAGTTTCGCCACAAAGGCATCATTCACATGC-AGTACTC-GCCACAAATAC
1 TTTCCTGTCCAAAGTTTCGCCACAAAGGCATC-TTCACAT-CTAGTAC-CGGCCACAAATAC
* * ** *
27687383 TTTCTTGTCTAAAGTTTTTCCACAAAGGCATCTTTACATCTAGTACCGGCCACAAA
1 TTTCCTGTCCAAAGTTTCGCCACAAAGGCATCTTCACATCTAGTACCGGCCACAAA
27687439 GGCTGACCTT
Statistics
Matches: 49, Mismatches: 5, Indels: 5
0.83 0.08 0.08
Matches are distributed among these distances:
58 2 0.04
59 19 0.39
60 28 0.57
ACGTcount: A:0.29, C:0.28, G:0.13, T:0.29
Consensus pattern (59 bp):
TTTCCTGTCCAAAGTTTCGCCACAAAGGCATCTTCACATCTAGTACCGGCCACAAATAC
Found at i:27691416 original size:46 final size:47
Alignment explanation
Indices: 27691242--27691489 Score: 208
Period size: 46 Copynumber: 5.3 Consensus size: 47
27691232 ATTCATGTGT
* * *
27691242 GAGCTAGTGTAAGACATGCCTGGGACAT-GCATCAGCCACATT-A-A-GA
1 GAGCCAGTGTAAGACATGTCTGGGACATGGCATC-G--ACTTTGAGATGA
* * * *
27691288 GAGCCAATGTAAGACCATCTCTGGGACATGGCATCGACATTGAGACGA
1 GAGCCAGTGTAAGA-CATGTCTGGGACATGGCATCGACTTTGAGATGA
* * *
27691336 GGGCTAGTGTAAGACATGTCTGGGACAT-GCATCGGCTTTGAGATGTA
1 GAGCCAGTGTAAGACATGTCTGGGACATGGCATCGACTTTGAGATG-A
* * **
27691383 -AGCCAATGTAAGACATGTCTGGGACAT-GCATCGGCTACGAGATGA
1 GAGCCAGTGTAAGACATGTCTGGGACATGGCATCGACTTTGAGATGA
* ** *
27691428 TAGTTAGTGTAAGACCATTTCTGGGACATGGCATCGAC-TTGAGAT-A
1 GAGCCAGTGTAAGA-CATGTCTGGGACATGGCATCGACTTTGAGATGA
27691474 TGAGCCAGTGTAAGAC
1 -GAGCCAGTGTAAGAC
27691490 TGTGTTTAGG
Statistics
Matches: 166, Mismatches: 26, Indels: 20
0.78 0.12 0.09
Matches are distributed among these distances:
45 6 0.04
46 78 0.47
47 57 0.34
48 25 0.15
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.23
Consensus pattern (47 bp):
GAGCCAGTGTAAGACATGTCTGGGACATGGCATCGACTTTGAGATGA
Found at i:27691470 original size:93 final size:93
Alignment explanation
Indices: 27691242--27691489 Score: 247
Period size: 94 Copynumber: 2.7 Consensus size: 93
27691232 ATTCATGTGT
* * * *
27691242 GAGCTAGTGTAAGACATGCCTGGGACATGCATCAGCCACATT-A-AGA-GAGCCAATGTAAGACC
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATC-G--ACTTTGAGATATAAGCCAATGTAAGA-C
*
27691304 ATCTCTGGGACATGGCATCGACATTGAGACGA
62 ATCTCTGGGACATGGCATCGACATCGAGACGA
* * * *
27691336 GGGCTAGTGTAAGACATGTCTGGGACATGCATCGGCTTTGAGATGTAAGCCAATGTAAGACATGT
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGACTTTGAGATATAAGCCAATGTAAGACATCT
* *
27691401 CTGGGACAT-GCATCGGC-TACGAGATGA
66 CTGGGACATGGCATCGACAT-CGAGACGA
* * * * *
27691428 TAGTTAGTGTAAGACCATTTCTGGGACATGGCATCGAC-TTGAGATATGAGCCAGTGTAAGAC
1 GAGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGACTTTGAGATATAAGCCAATGTAAGAC
27691490 TGTGTTTAGG
Statistics
Matches: 129, Mismatches: 19, Indels: 13
0.80 0.12 0.08
Matches are distributed among these distances:
91 4 0.03
92 25 0.19
93 49 0.38
94 51 0.40
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.23
Consensus pattern (93 bp):
GAGCTAGTGTAAGACATGTCTGGGACATGCATCGACTTTGAGATATAAGCCAATGTAAGACATCT
CTGGGACATGGCATCGACATCGAGACGA
Found at i:27698364 original size:26 final size:26
Alignment explanation
Indices: 27698328--27698381 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
27698318 TTTACATCAA
27698328 TGCTCACACGAGCTGTGAAATGGGCC
1 TGCTCACACGAGCTGTGAAATGGGCC
27698354 TGCTCACACGAGCTGTGAAATGGGCC
1 TGCTCACACGAGCTGTGAAATGGGCC
27698380 TG
1 TG
27698382 GTTGGAATGT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.22, C:0.26, G:0.31, T:0.20
Consensus pattern (26 bp):
TGCTCACACGAGCTGTGAAATGGGCC
Found at i:27698725 original size:38 final size:38
Alignment explanation
Indices: 27698661--27698741 Score: 119
Period size: 38 Copynumber: 2.1 Consensus size: 38
27698651 TAGTTCATCT
*
27698661 GAACTTACCTTGATAACTAGGATCGAAGTAGTAGAATG
1 GAACTTACCTTGATAACTAGGATCGAAGTAGTAGAATC
* *
27698699 GAACTTACCTCT-ATAATTAGGGTCGAAGTAGTAGAATC
1 GAACTTACCT-TGATAACTAGGATCGAAGTAGTAGAATC
27698737 GAACT
1 GAACT
27698742 AATCCAAATC
Statistics
Matches: 39, Mismatches: 3, Indels: 2
0.89 0.07 0.05
Matches are distributed among these distances:
38 38 0.97
39 1 0.03
ACGTcount: A:0.36, C:0.15, G:0.22, T:0.27
Consensus pattern (38 bp):
GAACTTACCTTGATAACTAGGATCGAAGTAGTAGAATC
Found at i:27701656 original size:49 final size:49
Alignment explanation
Indices: 27701596--27701896 Score: 446
Period size: 49 Copynumber: 6.4 Consensus size: 49
27701586 TACATATGTG
* * * *
27701596 TGTGATAAGGCCGAATGGCCAATGCGATGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
* *
27701645 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGGATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
*
27701694 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
27701743 TGTGATAAGGCCTAA-GGCCGATGTGGTGAATGTG-AA--G--TG--TA
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
*
27701784 --TG-TAAGGCCTAATGGCCGATGTGGTGAATGTAAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
27701830 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
27701879 TGTG-TAAGGCCTAATGGC
1 TGTGATAAGGCCTAATGGC
27701897 TAATGTAAAA
Statistics
Matches: 231, Mismatches: 10, Indels: 23
0.88 0.04 0.09
Matches are distributed among these distances:
38 10 0.04
39 20 0.09
40 2 0.01
41 2 0.01
42 1 0.00
43 2 0.01
44 2 0.01
45 1 0.00
46 2 0.01
47 2 0.01
48 35 0.15
49 152 0.66
ACGTcount: A:0.29, C:0.09, G:0.33, T:0.29
Consensus pattern (49 bp):
TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
Found at i:27701950 original size:136 final size:136
Alignment explanation
Indices: 27701650--27701912 Score: 377
Period size: 136 Copynumber: 1.9 Consensus size: 136
27701640 GTATATGTGA
* * * *
27701650 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGGATGTATATGTGATGAGGCCTAATGGCCG
1 TAAGGCCTAATAGCCGATGTGCTGAATGTAAAAGTGGATGTATATGTGATAAGGCCTAATGGCCG
* *** *
27701715 ATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAAGGCCGATGTGGTGAATGTGAAG
66 ATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAAGGCCAATGTGAAAAATATGAAG
27701780 TGTATG
131 TGTATG
* * *
27701786 TAAGGCCTAATGGCCGATGTGGTGAATGTAAAAGTGTATGTATATGTGATAAGGCCTAATGGCCG
1 TAAGGCCTAATAGCCGATGTGCTGAATGTAAAAGTGGATGTATATGTGATAAGGCCTAATGGCCG
*
27701851 ATGTGGTGAATGTGAAAGTGTATGTATATGTG-TAAGGCCTAATGGCTAATGT-AAAATATATG
66 ATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAA-GGCCAATGTGAAAA-ATATG
27701913 TGTGATATGC
Statistics
Matches: 115, Mismatches: 10, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
135 11 0.10
136 104 0.90
ACGTcount: A:0.30, C:0.09, G:0.32, T:0.30
Consensus pattern (136 bp):
TAAGGCCTAATAGCCGATGTGCTGAATGTAAAAGTGGATGTATATGTGATAAGGCCTAATGGCCG
ATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAAGGCCAATGTGAAAAATATGAAG
TGTATG
Found at i:27702048 original size:37 final size:37
Alignment explanation
Indices: 27701998--27702082 Score: 152
Period size: 37 Copynumber: 2.3 Consensus size: 37
27701988 GGAATATGTT
*
27701998 CCGGGTGAGACCCGATGACTACGTGTGGAGATTATGA
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
*
27702035 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGT
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
27702072 CCGGGTAAGAC
1 CCGGGTAAGAC
27702083 TTCTTTTATA
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 46 1.00
ACGTcount: A:0.25, C:0.20, G:0.34, T:0.21
Consensus pattern (37 bp):
CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
Found at i:27703957 original size:40 final size:40
Alignment explanation
Indices: 27703900--27704103 Score: 284
Period size: 40 Copynumber: 5.1 Consensus size: 40
27703890 GAGAATTGAG
* * *
27703900 AGTGATATATCCAGACTAAGTTCCGAAGAGCATTCATGCT
1 AGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCATGCT
* *
27703940 AGTGATATATCCGGACTAAGTTCCGAAGAGCATTCATGCT
1 AGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCATGCT
* *
27703980 AGTGATGTATCCGGGCAAAG-TCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCATGCT
* * *
27704019 AGTGATGTATCCGGGCAAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCATGCT
* * *
27704059 AGTGATGTATCCGGGCTAGGTCCCGAAGAGCAATCATGCT
1 AGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCATGCT
27704099 AGTGA
1 AGTGA
27704104 CGTGTATTCG
Statistics
Matches: 153, Mismatches: 10, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
39 38 0.25
40 115 0.75
ACGTcount: A:0.28, C:0.21, G:0.27, T:0.25
Consensus pattern (40 bp):
AGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCATGCT
Found at i:27704011 original size:79 final size:79
Alignment explanation
Indices: 27703921--27704103 Score: 276
Period size: 79 Copynumber: 2.3 Consensus size: 79
27703911 CAGACTAAGT
* *
27703921 TCCGAAGAGCATTCATGCTAGTGATATATCCGGACTAAGTTCCGAAGAGCATTCATGCTAGTGAT
1 TCCGAAGAGCATTCATGCTAGTGATATATCCGGACAAAGTCCCGAAGAGCATTCATGCTAGTGAT
27703986 GTATCCGGGCAAAG
66 GTATCCGGGCAAAG
* * * *
27704000 TCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCAAAGTCCCGAAGAGCATTCGTGCTAGTGAT
1 TCCGAAGAGCATTCATGCTAGTGATATATCCGGACAAAGTCCCGAAGAGCATTCATGCTAGTGAT
* *
27704065 GTATCCGGGCTAGG
66 GTATCCGGGCAAAG
*
27704079 TCCCGAAGAGCAATCATGCTAGTGA
1 T-CCGAAGAGCATTCATGCTAGTGA
27704104 CGTGTATTCG
Statistics
Matches: 93, Mismatches: 10, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
79 72 0.77
80 21 0.23
ACGTcount: A:0.27, C:0.21, G:0.28, T:0.24
Consensus pattern (79 bp):
TCCGAAGAGCATTCATGCTAGTGATATATCCGGACAAAGTCCCGAAGAGCATTCATGCTAGTGAT
GTATCCGGGCAAAG
Found at i:27704310 original size:29 final size:29
Alignment explanation
Indices: 27704277--27704526 Score: 439
Period size: 29 Copynumber: 8.7 Consensus size: 29
27704267 CGAATGAATA
27704277 GAGGCACTATGTGTGCGAGATCAGTAATC
1 GAGGCACTATGTGTGCGAGATCAGTAATC
*
27704306 GAGGCACTATGTGT-CGAGATCAGTAATT
1 GAGGCACTATGTGTGCGAGATCAGTAATC
27704334 GAGGCACTATGTGTGCGAGATCAGTAATC
1 GAGGCACTATGTGTGCGAGATCAGTAATC
*
27704363 GAGGCACTATGTGTGCGAGATCAGTAATT
1 GAGGCACTATGTGTGCGAGATCAGTAATC
27704392 GAGGCACTATGTGTGCGAGATCAGTAATC
1 GAGGCACTATGTGTGCGAGATCAGTAATC
27704421 GAGGCACTATGTGTGCGAGATCAGTAATC
1 GAGGCACTATGTGTGCGAGATCAGTAATC
*
27704450 GAGGCACTATGTGTGCGAGATCAGTAATT
1 GAGGCACTATGTGTGCGAGATCAGTAATC
* *
27704479 GAGGCACTACGTGTGCGAGATCAGTAATT
1 GAGGCACTATGTGTGCGAGATCAGTAATC
*
27704508 GAGGCACTGTGTGTGCGAG
1 GAGGCACTATGTGTGCGAG
27704527 TTTTTCAACA
Statistics
Matches: 212, Mismatches: 8, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
28 27 0.13
29 185 0.87
ACGTcount: A:0.27, C:0.16, G:0.32, T:0.25
Consensus pattern (29 bp):
GAGGCACTATGTGTGCGAGATCAGTAATC
Found at i:27707737 original size:29 final size:29
Alignment explanation
Indices: 27707704--27707777 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
27707694 GTGACGAGAT
27707704 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
27707733 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
27707762 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
27707778 AGCTCGAAGG
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.15, G:0.31, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:27707793 original size:29 final size:29
Alignment explanation
Indices: 27707761--27707836 Score: 89
Period size: 29 Copynumber: 2.6 Consensus size: 29
27707751 CTGGAAATAT
* *
27707761 ATGGCACTAAGTGTGCGAGCTCGAAGGGC
1 ATGGCACTAAGTGTGCGAGCTCAAAGCGC
** * * *
27707790 ATGGCACTGTGTGTGCGGGCTTAAATCGC
1 ATGGCACTAAGTGTGCGAGCTCAAAGCGC
27707819 ATGGCACTAAGTGTGCGA
1 ATGGCACTAAGTGTGCGA
27707837 AATCGAGTAT
Statistics
Matches: 37, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
29 37 1.00
ACGTcount: A:0.22, C:0.20, G:0.36, T:0.22
Consensus pattern (29 bp):
ATGGCACTAAGTGTGCGAGCTCAAAGCGC
Found at i:27707804 original size:58 final size:58
Alignment explanation
Indices: 27707704--27707836 Score: 133
Period size: 58 Copynumber: 2.3 Consensus size: 58
27707694 GTGACGAGAT
* * * * * *
27707704 TGGCACTAAGTGTGCGTGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAAAT-ATA
1 TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCT-GAAATCACA
* * ** * * *
27707762 TGGCACTAAGTGTGCGAGCTCGAAGGGCATGGCACTGTGTGTGCGGGCTTAAATCGCA
1 TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCTGAAATCACA
27707820 TGGCACTAAGTGTGCGA
1 TGGCACTAAGTGTGCGA
27707837 AATCGAGTAT
Statistics
Matches: 61, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
57 4 0.07
58 57 0.93
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.25
Consensus pattern (58 bp):
TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCTGAAATCACA
Found at i:27715619 original size:29 final size:29
Alignment explanation
Indices: 27715586--27715659 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
27715576 GTGACGAGAT
27715586 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
27715615 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
27715644 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
27715660 AGCTCGAAGG
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.15, G:0.31, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:27715675 original size:29 final size:29
Alignment explanation
Indices: 27715643--27715718 Score: 89
Period size: 29 Copynumber: 2.6 Consensus size: 29
27715633 CTGGAAATAT
* *
27715643 ATGGCACTAAGTGTGCGAGCTCGAAGGGC
1 ATGGCACTAAGTGTGCGAGCTCAAAGCGC
** * * *
27715672 ATGGCACTGTGTGTGCGGGCTTAAATCGC
1 ATGGCACTAAGTGTGCGAGCTCAAAGCGC
27715701 ATGGCACTAAGTGTGCGA
1 ATGGCACTAAGTGTGCGA
27715719 AATCGAGTAT
Statistics
Matches: 37, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
29 37 1.00
ACGTcount: A:0.22, C:0.20, G:0.36, T:0.22
Consensus pattern (29 bp):
ATGGCACTAAGTGTGCGAGCTCAAAGCGC
Found at i:27715686 original size:58 final size:58
Alignment explanation
Indices: 27715586--27715718 Score: 133
Period size: 58 Copynumber: 2.3 Consensus size: 58
27715576 GTGACGAGAT
* * * * * *
27715586 TGGCACTAAGTGTGCGTGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAAAT-ATA
1 TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCT-GAAATCACA
* * ** * * *
27715644 TGGCACTAAGTGTGCGAGCTCGAAGGGCATGGCACTGTGTGTGCGGGCTTAAATCGCA
1 TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCTGAAATCACA
27715702 TGGCACTAAGTGTGCGA
1 TGGCACTAAGTGTGCGA
27715719 AATCGAGTAT
Statistics
Matches: 61, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
57 4 0.07
58 57 0.93
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.25
Consensus pattern (58 bp):
TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCTGAAATCACA
Found at i:27717906 original size:28 final size:28
Alignment explanation
Indices: 27717874--27717972 Score: 112
Period size: 28 Copynumber: 3.5 Consensus size: 28
27717864 GCAATAAGCC
*
27717874 CGCACACTTAGTGCTTAATAGTCGAACT
1 CGCACACTTAGTGCTTAATAATCGAACT
*
27717902 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTA-ATAATCGAACT
* * *
27717930 TGCACACTTAGTGCTGT-ATAATTTGAACC
1 CGCACACTTAGTGCT-TAATAA-TCGAACT
27717959 CGCACACTTAGTGC
1 CGCACACTTAGTGC
27717973 CAATTTGTGA
Statistics
Matches: 60, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
27 2 0.03
28 40 0.67
29 17 0.28
30 1 0.02
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTTAATAATCGAACT
Found at i:27722019 original size:51 final size:51
Alignment explanation
Indices: 27721864--27722055 Score: 149
Period size: 51 Copynumber: 3.8 Consensus size: 51
27721854 ATCGTAAGAA
* * *
27721864 CACATGTGTAGTACTATGTGCAGGCTACTATGTGTTTAA-A-ATGGTTTTAGCT
1 CACATGTGTAGTACTAAGTGCAGGCCACTATGTG--TAAGAGATGGTTTT-GAT
* * * *** * * *
27721916 CACGTGTGTAGTATTAAGTGCAGGCTC-CTATGCGTACTTGATAGCTTCGAT
1 CACATGTGTAGTACTAAGTGCAGGC-CACTATGTGTAAGAGATGGTTTTGAT
*
27721967 CACATGTGTAGTGCTAAGTGCAGGCCACTATGTGTAAGAGATGGTTTTGAT
1 CACATGTGTAGTACTAAGTGCAGGCCACTATGTGTAAGAGATGGTTTTGAT
* * * * * *
27722018 CATAAGTGTGGTACTATGTGAAGGCCACTTTGTG-AAGA
1 CACATGTGTAGTACTAAGTGCAGGCCACTATGTGTAAGA
27722056 AGGTAGCTTT
Statistics
Matches: 108, Mismatches: 28, Indels: 10
0.74 0.19 0.07
Matches are distributed among these distances:
50 7 0.06
51 68 0.63
52 33 0.31
ACGTcount: A:0.25, C:0.15, G:0.27, T:0.33
Consensus pattern (51 bp):
CACATGTGTAGTACTAAGTGCAGGCCACTATGTGTAAGAGATGGTTTTGAT
Found at i:27724886 original size:18 final size:18
Alignment explanation
Indices: 27724863--27724921 Score: 75
Period size: 18 Copynumber: 3.3 Consensus size: 18
27724853 TAGCCCATTT
27724863 CAGTAACAGTAATTAGTG
1 CAGTAACAGTAATTAGTG
* * *
27724881 CAGTAACCA-TGATCAATG
1 CAGTAA-CAGTAATTAGTG
27724899 CAGTAACAGTAATTAGTG
1 CAGTAACAGTAATTAGTG
27724917 CAGTA
1 CAGTA
27724922 TGCAAGGAAG
Statistics
Matches: 33, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
17 2 0.06
18 29 0.88
19 2 0.06
ACGTcount: A:0.39, C:0.15, G:0.20, T:0.25
Consensus pattern (18 bp):
CAGTAACAGTAATTAGTG
Found at i:27725206 original size:23 final size:23
Alignment explanation
Indices: 27725180--27725229 Score: 68
Period size: 23 Copynumber: 2.2 Consensus size: 23
27725170 ACCCCATGCA
27725180 ATGCAACATA-ATATTATACATGG-
1 ATGCAACATACATA-TA-ACATGGC
27725203 ATGCAACATACATATAACATGGC
1 ATGCAACATACATATAACATGGC
27725226 ATGC
1 ATGC
27725230 TCAAATACAG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
22 6 0.24
23 16 0.64
24 3 0.12
ACGTcount: A:0.42, C:0.18, G:0.14, T:0.26
Consensus pattern (23 bp):
ATGCAACATACATATAACATGGC
Found at i:27725310 original size:27 final size:26
Alignment explanation
Indices: 27725264--27725407 Score: 137
Period size: 27 Copynumber: 5.3 Consensus size: 26
27725254 GAACAAATCT
* * *
27725264 GTCATTTTACCTTACCGGGGTATTAC
1 GTCATTTTACCCTACAGGGGTATTTC
*
27725290 AGTCATTTTACCCTACAGGGGTGTTTC
1 -GTCATTTTACCCTACAGGGGTATTTC
*
27725317 GATCATTCTACCCTACAGGGGTATTTC
1 G-TCATTTTACCCTACAGGGGTATTTC
* * *
27725344 GATCATTCTACCCTATAGAGGTATTTC
1 G-TCATTTTACCCTACAGGGGTATTTC
*
27725371 GGTCATTTTACCCTA-TGAGGGTATTTC
1 -GTCATTTTACCCTACAG-GGGTATTTC
*
27725398 GGTTATTTTA
1 -GTCATTTTA
27725408 TCACATAAGG
Statistics
Matches: 102, Mismatches: 12, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
26 2 0.02
27 99 0.97
28 1 0.01
ACGTcount: A:0.21, C:0.21, G:0.19, T:0.39
Consensus pattern (26 bp):
GTCATTTTACCCTACAGGGGTATTTC
Found at i:27734942 original size:23 final size:23
Alignment explanation
Indices: 27734916--27734979 Score: 83
Period size: 23 Copynumber: 2.8 Consensus size: 23
27734906 GATGAAGCAT
*
27734916 TTATGGCATATTCTGTGATGCCG
1 TTATGGCATATTCTGTGATACCG
** * *
27734939 TTATGGTGTATTTTGTGATACCT
1 TTATGGCATATTCTGTGATACCG
27734962 TTATGGCATATTCTGTGA
1 TTATGGCATATTCTGTGA
27734980 AGACTTTTGT
Statistics
Matches: 33, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
23 33 1.00
ACGTcount: A:0.19, C:0.12, G:0.23, T:0.45
Consensus pattern (23 bp):
TTATGGCATATTCTGTGATACCG
Found at i:27734986 original size:23 final size:23
Alignment explanation
Indices: 27734892--27734986 Score: 79
Period size: 23 Copynumber: 4.2 Consensus size: 23
27734882 AAAAAAAAGG
*
27734892 CTTTGTGGC-TATTC-GATGAAGC
1 CTTTATGGCATATTCTG-TGAAGC
* *
27734914 ATTTATGGCATATTCTGTGATGC
1 CTTTATGGCATATTCTGTGAAGC
* ** *
27734937 CGTTATGGTGTATTTTGTGATA-C
1 CTTTATGGCATATTCTGTGA-AGC
*
27734960 CTTTATGGCATATTCTGTGAAGA
1 CTTTATGGCATATTCTGTGAAGC
27734983 CTTT
1 CTTT
27734987 TGTGGTGTAT
Statistics
Matches: 55, Mismatches: 14, Indels: 7
0.72 0.18 0.09
Matches are distributed among these distances:
22 8 0.15
23 46 0.84
24 1 0.02
ACGTcount: A:0.20, C:0.14, G:0.23, T:0.43
Consensus pattern (23 bp):
CTTTATGGCATATTCTGTGAAGC
Found at i:27736667 original size:47 final size:47
Alignment explanation
Indices: 27736594--27736861 Score: 169
Period size: 46 Copynumber: 5.7 Consensus size: 47
27736584 TGGTAAGATA
* * *
27736594 CCGATGCCATGTCCCAAACACGGTCTTACACTGGCTCA-CATCTC-AAG
1 CCGATG-CATATCCCAGACATGGTCTTACACTGGCT-ATCATCTCGAAG
* * * * *
27736641 TCGATGCCTTATCCTAGACATGGTCTTACACTGACTATCATCTCGTAG
1 CCGATG-CATATCCCAGACATGGTCTTACACTGGCTATCATCTCGAAG
* * * *
27736689 CCGATGCATGTCCCAGACAT-GTCTTACACTGGCTTAT-GTTTCGAGG
1 CCGATGCATATCCCAGACATGGTCTTACACTGGC-TATCATCTCGAAG
* * * * *
27736735 CCAATGCATGTCCCAGACAT-GTTTTACACTAGC-ACTCGTCTC-AATG
1 CCGATGCATATCCCAGACATGGTCTTACACTGGCTA-TCATCTCGAA-G
* * * * * **
27736781 CTGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTTATAAT-GTGG
1 CCGATG-CATATCCCAGACATGGTCTTACACTGGCTATCAT-CTCGAAG
*
27736829 CCGA-GCATGTCCCAGACAT-GTCTTACACTGGCT
1 CCGATGCATATCCCAGACATGGTCTTACACTGGCT
27736862 CACGCAAGTG
Statistics
Matches: 177, Mismatches: 33, Indels: 24
0.76 0.14 0.10
Matches are distributed among these distances:
44 1 0.01
45 16 0.09
46 71 0.40
47 64 0.36
48 24 0.14
49 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.28
Consensus pattern (47 bp):
CCGATGCATATCCCAGACATGGTCTTACACTGGCTATCATCTCGAAG
Found at i:27736755 original size:93 final size:93
Alignment explanation
Indices: 27736656--27736858 Score: 222
Period size: 93 Copynumber: 2.2 Consensus size: 93
27736646 GCCTTATCCT
*
27736656 AGACATGGTCTTACACTGA-CTA-TCATCTC-GTAGCCGATG-CATGTCCCAGACAT-GTCTTAC
1 AGACAT-GTCTTACACTGAGC-ACTCATCTCAAT-GCCGATGCCATGTCCCAGACATGGTCTTAC
**
27736716 ACTGG-CTTATGTTTCGAGGCCAATGCATGTCCC
63 ACTGGCCTTAT-AAT-GAGGCCAA-GCATGTCCC
* * *
27736749 AGACATGTTTTACACT-AGCACTCGTCTCAATGCTGATGCCATGTCCCAGACATGGTCTTACACT
1 AGACATGTCTTACACTGAGCACTCATCTCAATGCCGATGCCATGTCCCAGACATGGTCTTACACT
* *
27736813 GGCTCTTATAATGTGGCCGAGCATGTCCC
66 GGC-CTTATAATGAGGCCAAGCATGTCCC
27736842 AGACATGTCTTACACTG
1 AGACATGTCTTACACTG
27736859 GCTCACGCAA
Statistics
Matches: 93, Mismatches: 9, Indels: 15
0.79 0.08 0.13
Matches are distributed among these distances:
91 2 0.02
92 22 0.24
93 45 0.48
94 18 0.19
95 1 0.01
96 5 0.05
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.29
Consensus pattern (93 bp):
AGACATGTCTTACACTGAGCACTCATCTCAATGCCGATGCCATGTCCCAGACATGGTCTTACACT
GGCCTTATAATGAGGCCAAGCATGTCCC
Found at i:27738982 original size:15 final size:15
Alignment explanation
Indices: 27738962--27738992 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
27738952 AAATATGAAA
27738962 GATATGTTTTGGATT
1 GATATGTTTTGGATT
*
27738977 GATATGTTTTGTATT
1 GATATGTTTTGGATT
27738992 G
1 G
27738993 GAATTTTTGA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.19, C:0.00, G:0.26, T:0.55
Consensus pattern (15 bp):
GATATGTTTTGGATT
Found at i:27739852 original size:26 final size:26
Alignment explanation
Indices: 27739823--27739898 Score: 102
Period size: 26 Copynumber: 3.0 Consensus size: 26
27739813 CCAACACACC
*
27739823 AATATCGCAGCAAAACTGCCAGTAAT
1 AATATCGCAGCAAAGCTGCCAGTAAT
27739849 AATATCGCAGCAAAGCTGCCAGT-AT
1 AATATCGCAGCAAAGCTGCCAGTAAT
* *
27739874 AGTAAT-GCAGCAAAGCTGCTAGTAA
1 AAT-ATCGCAGCAAAGCTGCCAGTAA
27739899 CAGTATATGT
Statistics
Matches: 45, Mismatches: 3, Indels: 4
0.87 0.06 0.08
Matches are distributed among these distances:
25 20 0.44
26 25 0.56
ACGTcount: A:0.39, C:0.21, G:0.20, T:0.20
Consensus pattern (26 bp):
AATATCGCAGCAAAGCTGCCAGTAAT
Found at i:27742549 original size:45 final size:45
Alignment explanation
Indices: 27742463--27742549 Score: 120
Period size: 45 Copynumber: 1.9 Consensus size: 45
27742453 TAGGATCCGA
* * * * *
27742463 TATGTGTTTTCGTGTAAGACCACGTCTGGGACGTTGGCATCGATG
1 TATGTGGTTACGTGTAAGACCACGTCTGGGACATCGACATCGATG
*
27742508 TATGTGGTTACGTGTAAGACCATGTCTGGGACATCGACATCG
1 TATGTGGTTACGTGTAAGACCACGTCTGGGACATCGACATCG
27742550 TATTCGATTC
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
45 36 1.00
ACGTcount: A:0.21, C:0.18, G:0.30, T:0.31
Consensus pattern (45 bp):
TATGTGGTTACGTGTAAGACCACGTCTGGGACATCGACATCGATG
Found at i:27748949 original size:49 final size:47
Alignment explanation
Indices: 27748889--27749093 Score: 284
Period size: 47 Copynumber: 4.3 Consensus size: 47
27748879 GTATGAGATA
* *
27748889 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA--GTG
* * *
27748938 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTG
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
27748985 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
* * * * * *
27749032 TATATATGTGATAGGGCCGAGTGGCCAACGTGATGGATATGGAAGTG
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
*
27749079 TATAAATGTGATAAG
1 TATATATGTGATAAG
27749094 TCCTGAAGGG
Statistics
Matches: 144, Mismatches: 12, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
47 101 0.70
49 43 0.30
ACGTcount: A:0.32, C:0.08, G:0.31, T:0.29
Consensus pattern (47 bp):
TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
Found at i:27751787 original size:39 final size:39
Alignment explanation
Indices: 27751733--27751876 Score: 243
Period size: 39 Copynumber: 3.7 Consensus size: 39
27751723 GAATGTTCGA
27751733 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
* *
27751772 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
27751811 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
27751850 GTGATATCCGGGTTAAGTCCCGAAGGC
1 GTGATATCCGGGCTAAG-CCCGAAGGC
27751877 CTTTGTGCGG
Statistics
Matches: 97, Mismatches: 7, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 88 0.91
40 9 0.09
ACGTcount: A:0.26, C:0.21, G:0.30, T:0.23
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
Found at i:27751823 original size:78 final size:79
Alignment explanation
Indices: 27751734--27751916 Score: 278
Period size: 78 Copynumber: 2.3 Consensus size: 79
27751724 AATGTTCGAG
27751734 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAG-CCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAGTCCCGAAGGC
27751798 AATTGTGCGAGTTA
66 AATTGTGCGAGTTA
*
27751812 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGTTAAGTCCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAGTCCCGAAGGC
** *
27751877 CTTTGTGCGGGTTA
66 AATTGTGCGAGTTA
** * *
27751891 CCATAACCGGGCTATGTCCCGAAGGC
1 TGATATCCGGGCTAAG-CCCGAAGGC
27751917 GTTTGAACGA
Statistics
Matches: 95, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
78 54 0.57
79 32 0.34
80 9 0.09
ACGTcount: A:0.25, C:0.22, G:0.30, T:0.23
Consensus pattern (79 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAGTCCCGAAGGC
AATTGTGCGAGTTA
Found at i:27755250 original size:15 final size:15
Alignment explanation
Indices: 27755230--27755260 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
27755220 AAATATGAAA
27755230 GATATGTTTTGGATT
1 GATATGTTTTGGATT
*
27755245 GATATGTTTTGTATT
1 GATATGTTTTGGATT
27755260 G
1 G
27755261 GAATTTTTGA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.19, C:0.00, G:0.26, T:0.55
Consensus pattern (15 bp):
GATATGTTTTGGATT
Found at i:27757197 original size:40 final size:40
Alignment explanation
Indices: 27757148--27757298 Score: 148
Period size: 40 Copynumber: 3.8 Consensus size: 40
27757138 ATAACCATGT
*
27757148 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC
* * *
27757188 GCACGAA-TGCCTTCGGGTCTTAGCCCGGAT-GTA-GCCACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATAGAATG--TCTC
* * *
27757228 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-C
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC
* * *
27757267 AGCATAATTGTCTTCGGGGCTTAGCCCGGATA
1 -GCACAATTGCCTTCGGGTCTTAGCCCGGATA
27757299 TCATTCAATT
Statistics
Matches: 91, Mismatches: 13, Indels: 14
0.77 0.11 0.12
Matches are distributed among these distances:
38 1 0.01
39 4 0.04
40 83 0.91
41 3 0.03
ACGTcount: A:0.22, C:0.27, G:0.25, T:0.26
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC
Found at i:27757282 original size:80 final size:80
Alignment explanation
Indices: 27757148--27757297 Score: 205
Period size: 80 Copynumber: 1.9 Consensus size: 80
27757138 ATAACCATGT
* *
27757148 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGGCTTAGCC
27757213 CGGATGTAGCCACTA
66 CGGATGTAGCCACTA
* * * * *
27757228 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGGCTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGGCTTAG
27757291 CCCGGAT
64 CCCGGAT
27757298 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 7, Indels: 4
0.85 0.10 0.06
Matches are distributed among these distances:
79 3 0.05
80 58 0.95
ACGTcount: A:0.21, C:0.27, G:0.25, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGGCTTAGCC
CGGATGTAGCCACTA
Found at i:27764748 original size:26 final size:26
Alignment explanation
Indices: 27764719--27764768 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
27764709 CCAACACACC
27764719 AATATCGCAGCAAAACTGCCAGTAAT
1 AATATCGCAGCAAAACTGCCAGTAAT
*
27764745 AATATCGCAGCAAAGCTGCCAGTA
1 AATATCGCAGCAAAACTGCCAGTA
27764769 TCAGTAATGC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.40, C:0.24, G:0.18, T:0.18
Consensus pattern (26 bp):
AATATCGCAGCAAAACTGCCAGTAAT
Found at i:27764780 original size:26 final size:26
Alignment explanation
Indices: 27764725--27764826 Score: 84
Period size: 26 Copynumber: 3.9 Consensus size: 26
27764715 CACCAATATC
* *
27764725 GCAGCAAAACTGCCAGTAAT-AAT-AT
1 GCAGCAAAGCTGCCAGT-ATCAGTAAT
27764750 CGCAGCAAAGCTGCCAGTATCAGTAAT
1 -GCAGCAAAGCTGCCAGTATCAGTAAT
* *
27764777 GCAGCAAAGCTGCTAGTAACAGTATAT
1 GCAGCAAAGCTGCCAGTATCAGTA-AT
** **
27764804 GTGGCAAAGCCACCAGTA-CAGTA
1 GCAGCAAAGCTGCCAGTATCAGTA
27764827 CACTTACTCC
Statistics
Matches: 64, Mismatches: 9, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
25 2 0.03
26 45 0.70
27 17 0.27
ACGTcount: A:0.37, C:0.23, G:0.22, T:0.19
Consensus pattern (26 bp):
GCAGCAAAGCTGCCAGTATCAGTAAT
Found at i:27767401 original size:45 final size:45
Alignment explanation
Indices: 27767315--27767401 Score: 120
Period size: 45 Copynumber: 1.9 Consensus size: 45
27767305 TAGGATCCGA
* * * * *
27767315 TATGTGTTTTCGTGTAAGACCACGTCTGGGACGTTGGCATCGATG
1 TATGTGGTTACGTGTAAGACCACGTCTGGGACATCGACATCGATG
*
27767360 TATGTGGTTACGTGTAAGACCATGTCTGGGACATCGACATCG
1 TATGTGGTTACGTGTAAGACCACGTCTGGGACATCGACATCG
27767402 TATTCGATTC
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
45 36 1.00
ACGTcount: A:0.21, C:0.18, G:0.30, T:0.31
Consensus pattern (45 bp):
TATGTGGTTACGTGTAAGACCACGTCTGGGACATCGACATCGATG
Found at i:27771567 original size:15 final size:15
Alignment explanation
Indices: 27771547--27771577 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
27771537 AAATATGAAA
27771547 GATATGTTTTGGATT
1 GATATGTTTTGGATT
*
27771562 GATATGTTTTGTATT
1 GATATGTTTTGGATT
27771577 G
1 G
27771578 GAATTTTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.19, C:0.00, G:0.26, T:0.55
Consensus pattern (15 bp):
GATATGTTTTGGATT
Found at i:27775108 original size:25 final size:25
Alignment explanation
Indices: 27775076--27775124 Score: 98
Period size: 25 Copynumber: 2.0 Consensus size: 25
27775066 ATCTAGTTTC
27775076 TTTTATAATATCTATTTATTTCTAT
1 TTTTATAATATCTATTTATTTCTAT
27775101 TTTTATAATATCTATTTATTTCTA
1 TTTTATAATATCTATTTATTTCTA
27775125 ATAAATATTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.29, C:0.08, G:0.00, T:0.63
Consensus pattern (25 bp):
TTTTATAATATCTATTTATTTCTAT
Found at i:27775131 original size:21 final size:23
Alignment explanation
Indices: 27775079--27775132 Score: 67
Period size: 25 Copynumber: 2.3 Consensus size: 23
27775069 TAGTTTCTTT
*
27775079 TATAATATCTATTTATTTCTATTTT
1 TATAATATCTATTTATTTCTA--TA
27775104 TATAATATCTATTTATTTCTA-A
1 TATAATATCTATTTATTTCTATA
27775126 TA-AATAT
1 TATAATAT
27775133 TTATATAATA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
21 5 0.18
22 2 0.07
25 21 0.75
ACGTcount: A:0.35, C:0.07, G:0.00, T:0.57
Consensus pattern (23 bp):
TATAATATCTATTTATTTCTATA
Found at i:27775475 original size:22 final size:22
Alignment explanation
Indices: 27775450--27775493 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
27775440 TTATCTCTTT
27775450 TGATCGAAAAGGAGCAATAAAA
1 TGATCGAAAAGGAGCAATAAAA
*
27775472 TGATTGAAAAGGAGCAATAAAA
1 TGATCGAAAAGGAGCAATAAAA
27775494 AAATCGAGAG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.55, C:0.07, G:0.23, T:0.16
Consensus pattern (22 bp):
TGATCGAAAAGGAGCAATAAAA
Found at i:27777496 original size:13 final size:15
Alignment explanation
Indices: 27777471--27777510 Score: 66
Period size: 13 Copynumber: 2.8 Consensus size: 15
27777461 TATTTTATTA
27777471 AATAAATATTAAATT
1 AATAAATATTAAATT
27777486 AA-AAA-ATTAAATT
1 AATAAATATTAAATT
27777499 AATAAATATTAA
1 AATAAATATTAA
27777511 TAAATTAAGG
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
13 10 0.43
14 6 0.26
15 7 0.30
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (15 bp):
AATAAATATTAAATT
Found at i:27781410 original size:40 final size:40
Alignment explanation
Indices: 27781351--27781519 Score: 173
Period size: 40 Copynumber: 4.2 Consensus size: 40
27781341 CGGGACTTTA
* * *
27781351 CCCGGATATCACGATTTGCACAAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* *
27781391 CCCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * * * *
27781431 CCCGGATATAGCTACTAGCACAATTGCCTTCGGGTCTTAA
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * *
27781471 CCCGGATAT-A-AA-TTTCAGCATAATTGTCTTCGGGGCTTAG
1 CCCGGATATAACAACTTGCA-CA-AA-TGCCTTCGGGTCTTAG
27781511 CCCGGATAT
1 CCCGGATAT
27781520 CATTCAATTT
Statistics
Matches: 106, Mismatches: 20, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
37 3 0.03
38 3 0.03
39 1 0.01
40 99 0.93
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (40 bp):
CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
Found at i:27789415 original size:40 final size:40
Alignment explanation
Indices: 27789356--27789524 Score: 173
Period size: 40 Copynumber: 4.2 Consensus size: 40
27789346 CGGGACTTTA
* * *
27789356 CCCGGATATCACGATTTGCACAAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* *
27789396 CCCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * * * *
27789436 CCCGGATATAGCTACTAGCACAATTGCCTTCGGGTCTTAA
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * *
27789476 CCCGGATAT-A-AA-TTTCAGCATAATTGTCTTCGGGGCTTAG
1 CCCGGATATAACAACTTGCA-CA-AA-TGCCTTCGGGTCTTAG
27789516 CCCGGATAT
1 CCCGGATAT
27789525 CATTCAATTT
Statistics
Matches: 106, Mismatches: 20, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
37 3 0.03
38 3 0.03
39 1 0.01
40 99 0.93
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (40 bp):
CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
Found at i:27806844 original size:49 final size:49
Alignment explanation
Indices: 27806772--27807011 Score: 291
Period size: 49 Copynumber: 4.8 Consensus size: 49
27806762 GTAGCCAAAG
* * * * *
27806772 TTATCTGGTACGCATAGTTGCCTGCACTTAGTACTACTCATGCGACCAA
1 TTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAA
* *
27806821 TTATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAA
1 TTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACC-AA
** * * *
27806871 CCATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAA
1 TTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA
* * * *
27806921 GTTATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAA
1 -TTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAA
* *
27806971 TTATCCGGTACACGTACTAGCCTGCACTTAGTACTACACAC
1 TTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACAC
27807012 ATGACCTCAC
Statistics
Matches: 164, Mismatches: 24, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
49 76 0.46
50 50 0.30
51 38 0.23
ACGTcount: A:0.28, C:0.28, G:0.18, T:0.27
Consensus pattern (49 bp):
TTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAA
Found at i:27811206 original size:27 final size:26
Alignment explanation
Indices: 27811154--27811204 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
27811144 CGTAAATTCA
27811154 AGTCTTTCTATGACATCAAATATTTC
1 AGTCTTTCTATGACATCAAATATTTC
*
27811180 AGTCTTTCTGTGACATCAAATATTT
1 AGTCTTTCTATGACATCAAATATTT
27811205 TCAGAATTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.18, G:0.10, T:0.43
Consensus pattern (26 bp):
AGTCTTTCTATGACATCAAATATTTC
Found at i:27815242 original size:66 final size:65
Alignment explanation
Indices: 27815137--27815269 Score: 239
Period size: 66 Copynumber: 2.0 Consensus size: 65
27815127 TAGTACACGC
*
27815137 AAGGTGTATGATTCAATTACCCGCCAATTCTTATTCAAGAGTACCCATAAGGCATTTAATCAAAG
1 AAGGTGTATGATTCAATTACCCGCCAATTCTTATTCAAGAGTACCCATAAGGCACTTAATCAAAG
*
27815202 AAGGTGTACTGATTCAATTACCTGCCAATTCTTATTCAAGAGTACCCATAAGGCACTTAATCAAA
1 AAGGTGTA-TGATTCAATTACCCGCCAATTCTTATTCAAGAGTACCCATAAGGCACTTAATCAAA
27815267 G
65 G
27815268 AA
1 AA
27815270 CACACTCTCG
Statistics
Matches: 65, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
65 8 0.12
66 57 0.88
ACGTcount: A:0.36, C:0.20, G:0.15, T:0.29
Consensus pattern (65 bp):
AAGGTGTATGATTCAATTACCCGCCAATTCTTATTCAAGAGTACCCATAAGGCACTTAATCAAAG
Found at i:27817281 original size:40 final size:39
Alignment explanation
Indices: 27817222--27817366 Score: 112
Period size: 40 Copynumber: 3.6 Consensus size: 39
27817212 AAATTGAATG
* * *
27817222 ATATCCGGGCTAAGCCCCGAGGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAGG-CAATTATGCTAGAAACT
* * ***
27817262 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCG-AGGCAATTATGCTAGAAACT
* * ** *
27817302 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCG-AGGCAATT-ATGCTAGAAACT
*
27817342 CTATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCG-AGGCA
27817367 TTTGTGCACG
Statistics
Matches: 88, Mismatches: 14, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
39 3 0.03
40 82 0.93
41 3 0.03
ACGTcount: A:0.27, C:0.23, G:0.28, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAGGCAATTATGCTAGAAACT
Found at i:27817367 original size:40 final size:39
Alignment explanation
Indices: 27817261--27817389 Score: 152
Period size: 40 Copynumber: 3.2 Consensus size: 39
27817251 TGCTGGAAAT
* * *
27817261 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTGAC
* *
27817301 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTAT
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTGAC
* *
27817341 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGCGA-GTGAC
27817381 TATATCCGG
1 TATATCCGG
27817390 TTATATTCCG
Statistics
Matches: 78, Mismatches: 8, Indels: 6
0.85 0.09 0.07
Matches are distributed among these distances:
39 4 0.05
40 72 0.92
41 2 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGAC
Found at i:27820526 original size:46 final size:46
Alignment explanation
Indices: 27820457--27820548 Score: 116
Period size: 46 Copynumber: 2.0 Consensus size: 46
27820447 TTCTTTGGAA
* *
27820457 AAGCCTTTGTGGCGTATTCTATGATGCCGTT-ATGGCATATTCTATG
1 AAGCCTTTGCGGCGTATTCTATGATGCC-TTCATGGCATATTATATG
* *
27820503 AAGCCTTTGCGGTGTATGT-TATGATGCCTTCGTGGCATATTATATG
1 AAGCCTTTGCGGCGTAT-TCTATGATGCCTTCATGGCATATTATATG
27820549 CAACATTTTG
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
45 2 0.05
46 37 0.93
47 1 0.03
ACGTcount: A:0.20, C:0.16, G:0.25, T:0.39
Consensus pattern (46 bp):
AAGCCTTTGCGGCGTATTCTATGATGCCTTCATGGCATATTATATG
Found at i:27820548 original size:23 final size:23
Alignment explanation
Indices: 27820459--27820548 Score: 83
Period size: 23 Copynumber: 3.9 Consensus size: 23
27820449 CTTTGGAAAA
*
27820459 GCCTTTGTGGCGTATTCTATGAT
1 GCCTTTGTGGCATATTCTATGAT
* * *
27820482 GCCGTTATGGCATATTCTATGAA
1 GCCTTTGTGGCATATTCTATGAT
* **
27820505 GCCTTTGCGGTGTATGT-TATGAT
1 GCCTTTGTGGCATAT-TCTATGAT
* *
27820528 GCCTTCGTGGCATATTATATG
1 GCCTTTGTGGCATATTCTATG
27820549 CAACATTTTG
Statistics
Matches: 51, Mismatches: 14, Indels: 4
0.74 0.20 0.06
Matches are distributed among these distances:
22 1 0.02
23 49 0.96
24 1 0.02
ACGTcount: A:0.18, C:0.17, G:0.26, T:0.40
Consensus pattern (23 bp):
GCCTTTGTGGCATATTCTATGAT
Found at i:27832286 original size:17 final size:18
Alignment explanation
Indices: 27832254--27832288 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
27832244 CATATTGGAG
27832254 GCCCATGTGAGCCCACAC
1 GCCCATGTGAGCCCACAC
*
27832272 GCCCGTGTG-GCCCACAC
1 GCCCATGTGAGCCCACAC
27832289 AACCCATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.17, C:0.46, G:0.26, T:0.11
Consensus pattern (18 bp):
GCCCATGTGAGCCCACAC
Found at i:27836301 original size:2 final size:2
Alignment explanation
Indices: 27836294--27836325 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
27836284 TGGCTCTAGC
27836294 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
27836326 GTTTGCACAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:27837115 original size:40 final size:40
Alignment explanation
Indices: 27837032--27837184 Score: 143
Period size: 40 Copynumber: 3.8 Consensus size: 40
27837022 TCGAATGATG
* *
27837032 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTGACCAAA
* **
27837072 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTCCCAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTGACCAAA
* **
27837112 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGCT-ATTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TGACCA-AA
* * *
27837153 -CCGGGCTATGTCCCGAAGGCTTTTGAGCGAGT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
27837185 CGCTATATCC
Statistics
Matches: 94, Mismatches: 14, Indels: 11
0.79 0.12 0.09
Matches are distributed among these distances:
39 2 0.02
40 81 0.86
41 11 0.12
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACCAAA
Found at i:27839354 original size:22 final size:22
Alignment explanation
Indices: 27839329--27839374 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
27839319 GAACATATAG
27839329 GATGATTGATTTGGTATATTTT
1 GATGATTGATTTGGTATATTTT
27839351 GATGATTGATTTGGTATATTTT
1 GATGATTGATTTGGTATATTTT
27839373 GA
1 GA
27839375 ACAAGTTTGG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.24, C:0.00, G:0.24, T:0.52
Consensus pattern (22 bp):
GATGATTGATTTGGTATATTTT
Found at i:27848712 original size:49 final size:49
Alignment explanation
Indices: 27848646--27848779 Score: 162
Period size: 49 Copynumber: 2.7 Consensus size: 49
27848636 ACATAGGCTG
* *
27848646 GGTTATTTAGGTTGTGTGGGCCACACGAGCATGTAGACCACACAGGTTA
1 GGTTATTTAGGTCGTGTGGGTCACACGAGCATGTAGACCACACAGGTTA
* * * * * * *
27848695 GGTTATTTGGGTCGTGTGAGTCACATGAGCGTGTGGACCACATAGGTTG
1 GGTTATTTAGGTCGTGTGGGTCACACGAGCATGTAGACCACACAGGTTA
*
27848744 GGTTATTTAGGTCATGTGGGTCACAC-AGGCATGTAG
1 GGTTATTTAGGTCGTGTGGGTCACACGA-GCATGTAG
27848780 GCCCATTTTT
Statistics
Matches: 69, Mismatches: 15, Indels: 2
0.80 0.17 0.02
Matches are distributed among these distances:
48 1 0.01
49 68 0.99
ACGTcount: A:0.22, C:0.16, G:0.34, T:0.29
Consensus pattern (49 bp):
GGTTATTTAGGTCGTGTGGGTCACACGAGCATGTAGACCACACAGGTTA
Found at i:27850911 original size:14 final size:15
Alignment explanation
Indices: 27850891--27850925 Score: 63
Period size: 14 Copynumber: 2.4 Consensus size: 15
27850881 AATTGTTGAT
27850891 TTACTTACTACTTTA
1 TTACTTACTACTTTA
27850906 -TACTTACTACTTTA
1 TTACTTACTACTTTA
27850920 TTACTT
1 TTACTT
27850926 GTTTACGACT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 14 0.74
15 5 0.26
ACGTcount: A:0.26, C:0.20, G:0.00, T:0.54
Consensus pattern (15 bp):
TTACTTACTACTTTA
Found at i:27852980 original size:13 final size:15
Alignment explanation
Indices: 27852956--27852987 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
27852946 TTGAAGTGAA
27852956 AATATGTTAATT-AT
1 AATATGTTAATTAAT
27852970 AATAT-TTAATTAAT
1 AATATGTTAATTAAT
27852984 AATA
1 AATA
27852988 AATATAGGAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
13 6 0.35
14 11 0.65
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (15 bp):
AATATGTTAATTAAT
Done.