Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr03 135709677
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 135709677
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 102 of 438
Found at i:28975428 original size:24 final size:26
Alignment explanation
Indices: 28975387--28975448 Score: 76
Period size: 25 Copynumber: 2.4 Consensus size: 26
28975377 CTTCAAACCT
28975387 TAGCCGAATCTTC-ATCATCA-TTCACC
1 TAGCC-AAT-TTCTATCATCATTTCACC
*
28975413 TAGCC-ATTTCTATCATCATTTCACT
1 TAGCCAATTTCTATCATCATTTCACC
28975438 TAGCCAATTTC
1 TAGCCAATTTC
28975449 AACCCTTCTC
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
23 3 0.09
24 9 0.28
25 10 0.31
26 10 0.31
ACGTcount: A:0.26, C:0.31, G:0.06, T:0.37
Consensus pattern (26 bp):
TAGCCAATTTCTATCATCATTTCACC
Found at i:28978185 original size:27 final size:27
Alignment explanation
Indices: 28978115--28978266 Score: 207
Period size: 27 Copynumber: 5.7 Consensus size: 27
28978105 ATCGTTAAGA
*
28978115 CCCCGGTTTGTAAAATTACTGAAATA-
1 CCCCAGTTTGTAAAATTACTGAAATAC
* *
28978141 CCCTACTTTGTAAAATTACTGAAATAC
1 CCCCAGTTTGTAAAATTACTGAAATAC
*
28978168 CCCCAGTTTGTAAAATTACCGAAATAC
1 CCCCAGTTTGTAAAATTACTGAAATAC
* * *
28978195 CTCCAGTTTGTAAAATTACTAAAATGC
1 CCCCAGTTTGTAAAATTACTGAAATAC
* *
28978222 CCCTAGTTTGTAAAATTACTAAAATAC
1 CCCCAGTTTGTAAAATTACTGAAATAC
*
28978249 CCCCAATTTGTAAAATTA
1 CCCCAGTTTGTAAAATTA
28978267 TCAAAATACC
Statistics
Matches: 110, Mismatches: 15, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
26 23 0.21
27 87 0.79
ACGTcount: A:0.38, C:0.21, G:0.10, T:0.32
Consensus pattern (27 bp):
CCCCAGTTTGTAAAATTACTGAAATAC
Found at i:28978259 original size:81 final size:80
Alignment explanation
Indices: 28978120--28978277 Score: 244
Period size: 81 Copynumber: 2.0 Consensus size: 80
28978110 TAAGACCCCG
* * *
28978120 GTTTGTAAAATTACTGAAATACCCTACTTTGTAAAATTACTGAAATACCCCCAGTTTGTAAAATT
1 GTTTGTAAAATTACTAAAATACCCTACTTTGTAAAATTACTAAAATACCCCCAATTTGTAAAATT
*
28978185 ACCGAAATACCTCCA
66 ACCAAAATACCTCCA
* *
28978200 GTTTGTAAAATTACTAAAATGCCCCTAGTTTGTAAAATTACTAAAATACCCCCAATTTGTAAAAT
1 GTTTGTAAAATTACTAAAAT-ACCCTACTTTGTAAAATTACTAAAATACCCCCAATTTGTAAAAT
*
28978265 TATCAAAATACCT
65 TACCAAAATACCT
28978278 TTGTAGTCTA
Statistics
Matches: 70, Mismatches: 7, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
80 19 0.27
81 51 0.73
ACGTcount: A:0.39, C:0.20, G:0.09, T:0.32
Consensus pattern (80 bp):
GTTTGTAAAATTACTAAAATACCCTACTTTGTAAAATTACTAAAATACCCCCAATTTGTAAAATT
ACCAAAATACCTCCA
Found at i:28978289 original size:27 final size:27
Alignment explanation
Indices: 28978259--28978337 Score: 122
Period size: 27 Copynumber: 2.9 Consensus size: 27
28978249 CCCCAATTTG
* *
28978259 TAAAATTATCAAAATACCTTTGTAGTC
1 TAAAATTATCGAAATACCCTTGTAGTC
*
28978286 TAAAATTATCGAAATACCCTTGTAGTG
1 TAAAATTATCGAAATACCCTTGTAGTC
*
28978313 TAAAATTACCGAAATACCCTTGTAG
1 TAAAATTATCGAAATACCCTTGTAG
28978338 GGCAAAATGA
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 48 1.00
ACGTcount: A:0.39, C:0.16, G:0.11, T:0.33
Consensus pattern (27 bp):
TAAAATTATCGAAATACCCTTGTAGTC
Found at i:28978301 original size:54 final size:53
Alignment explanation
Indices: 28978125--28978304 Score: 143
Period size: 54 Copynumber: 3.3 Consensus size: 53
28978115 CCCCGGTTTG
* * * * * *
28978125 TAAAATTACTGAAATA-CCCTACTTTGTAAAATTACTGAAAT-ACCCCCAGTTTG
1 TAAAATTAC-GAAATACCCCCAATTTGTAAAATTACTAAAATGA-CCCTAGTGTC
* * * * *
28978178 TAAAATTACCGAAATACCTCCAGTTTGTAAAATTACTAAAATGCCCCTAGTTTG
1 TAAAATTA-CGAAATACCCCCAATTTGTAAAATTACTAAAATGACCCTAGTGTC
* * *
28978232 TAAAATTACTAAAATACCCCCAATTTGTAAAATTA-TCAAAAT-ACCTTTGTAGTC
1 TAAAATTAC-GAAATACCCCCAATTTGTAAAATTACT-AAAATGACCCTAGT-GTC
28978286 TAAAATTATCGAAATACCC
1 TAAAATTA-CGAAATACCC
28978305 TTGTAGTGTA
Statistics
Matches: 105, Mismatches: 15, Indels: 13
0.79 0.11 0.10
Matches are distributed among these distances:
53 21 0.20
54 83 0.79
55 1 0.01
ACGTcount: A:0.40, C:0.20, G:0.08, T:0.32
Consensus pattern (53 bp):
TAAAATTACGAAATACCCCCAATTTGTAAAATTACTAAAATGACCCTAGTGTC
Found at i:28978315 original size:81 final size:81
Alignment explanation
Indices: 28978125--28978331 Score: 215
Period size: 81 Copynumber: 2.6 Consensus size: 81
28978115 CCCCGGTTTG
* * * * *
28978125 TAAAATTACTGAAAT-ACCCTACTTTGTAAAATTACTGAAATACCCCCAGTTTGTAAAATTACCG
1 TAAAATTACTAAAATGACCCTAGTGTGTAAAATTACTGAAATACCCCCAATTTGTAAAATTACCA
* *
28978189 AAATACCTCCAGTTTG
66 AAATACCTCCAGTGTC
* * * *
28978205 TAAAATTACTAAAATGCCCCTAGTTTGTAAAATTACTAAAATACCCCCAATTTGTAAAATTATCA
1 TAAAATTACTAAAATGACCCTAGTGTGTAAAATTACTGAAATACCCCCAATTTGTAAAATTACCA
**
28978270 AAATACCT-TTGTAGTC
66 AAATACCTCCAGT-GTC
* * *
28978286 TAAAATTA-TCGAAAT-ACCCTTGTAGTGTAAAATTACCGAAATACCC
1 TAAAATTACT-AAAATGACCCTAGT-GTGTAAAATTACTGAAATACCC
28978332 TTGTAGGGCA
Statistics
Matches: 106, Mismatches: 17, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
80 23 0.22
81 83 0.78
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.31
Consensus pattern (81 bp):
TAAAATTACTAAAATGACCCTAGTGTGTAAAATTACTGAAATACCCCCAATTTGTAAAATTACCA
AAATACCTCCAGTGTC
Found at i:28981310 original size:27 final size:27
Alignment explanation
Indices: 28981216--28981329 Score: 99
Period size: 27 Copynumber: 4.2 Consensus size: 27
28981206 GGAGGAAGCG
28981216 TTCTGGTGGC-CATGCCACAAATATCTA
1 TTCTGGTGGCTC-TGCCACAAATATCTA
* * *
28981243 TTTTTGGTGGCTATGCCACAAATATCTG
1 -TTCTGGTGGCTCTGCCACAAATATCTA
**
28981271 TTCCAGTGGCTCTGCCAC-AATATCTA
1 TTCTGGTGGCTCTGCCACAAATATCTA
* ** *
28981297 TATCTGGTGACTCTGTTAC-AATATCTG
1 T-TCTGGTGGCTCTGCCACAAATATCTA
28981324 TTCTGG
1 TTCTGG
28981330 CAGCCATGCT
Statistics
Matches: 70, Mismatches: 14, Indels: 6
0.78 0.16 0.07
Matches are distributed among these distances:
26 13 0.19
27 34 0.49
28 23 0.33
ACGTcount: A:0.22, C:0.23, G:0.19, T:0.36
Consensus pattern (27 bp):
TTCTGGTGGCTCTGCCACAAATATCTA
Found at i:28985578 original size:2 final size:2
Alignment explanation
Indices: 28985571--28985604 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
28985561 TGATGGCCGA
28985571 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
28985605 CAACTATACT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:28996508 original size:28 final size:29
Alignment explanation
Indices: 28996441--28996512 Score: 112
Period size: 29 Copynumber: 2.5 Consensus size: 29
28996431 ATAGTGAATC
*
28996441 CGCACACTTAGTGCTATATATATTCAGCT
1 CGCACACTTAGTGCTATATATATTCAACT
28996470 CGCACACTTAGTGCTATATA-A-TCAAACT
1 CGCACACTTAGTGCTATATATATTC-AACT
28996498 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
28996513 GTACAATTTT
Statistics
Matches: 41, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
27 2 0.05
28 19 0.46
29 20 0.49
ACGTcount: A:0.29, C:0.26, G:0.14, T:0.31
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATATATTCAACT
Found at i:28997572 original size:16 final size:16
Alignment explanation
Indices: 28997551--28997582 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
28997541 ATTTCAAACC
28997551 AATCCTCCAAACTATG
1 AATCCTCCAAACTATG
28997567 AATCCTCCAAACTATG
1 AATCCTCCAAACTATG
28997583 CATGCATTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.38, C:0.31, G:0.06, T:0.25
Consensus pattern (16 bp):
AATCCTCCAAACTATG
Found at i:29004282 original size:28 final size:29
Alignment explanation
Indices: 29004215--29004286 Score: 112
Period size: 29 Copynumber: 2.5 Consensus size: 29
29004205 ATAGTGAATC
*
29004215 CGCACACTTAGTGCTATATATATTCAGCT
1 CGCACACTTAGTGCTATATATATTCAACT
29004244 CGCACACTTAGTGCTATATA-A-TCAAACT
1 CGCACACTTAGTGCTATATATATTC-AACT
29004272 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
29004287 GTACAATTTT
Statistics
Matches: 41, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
27 2 0.05
28 19 0.46
29 20 0.49
ACGTcount: A:0.29, C:0.26, G:0.14, T:0.31
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATATATTCAACT
Found at i:29012013 original size:28 final size:29
Alignment explanation
Indices: 29011946--29012017 Score: 112
Period size: 29 Copynumber: 2.5 Consensus size: 29
29011936 ATAGTGAATC
*
29011946 CGCACACTTAGTGCTATATATATTCAGCT
1 CGCACACTTAGTGCTATATATATTCAACT
29011975 CGCACACTTAGTGCTATATA-A-TCAAACT
1 CGCACACTTAGTGCTATATATATTC-AACT
29012003 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
29012018 GTACAATTTT
Statistics
Matches: 41, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
27 2 0.05
28 19 0.46
29 20 0.49
ACGTcount: A:0.29, C:0.26, G:0.14, T:0.31
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATATATTCAACT
Found at i:29012039 original size:30 final size:28
Alignment explanation
Indices: 29011945--29012046 Score: 89
Period size: 28 Copynumber: 3.5 Consensus size: 28
29011935 TATAGTGAAT
* *
29011945 CCGCACACTTAGTGCTATATATATTC-AGC
1 CCGCACACTTAGTGCTATACA-A-TCAAAC
* *
29011974 TCGCACACTTAGTGCTATATAATCAAAC
1 CCGCACACTTAGTGCTATACAATCAAAC
* * *
29012002 TCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATACAA--TCAAAC
*
29012032 CCGCACACTCAGTGC
1 CCGCACACTTAGTGC
29012047 CAATCTTGTC
Statistics
Matches: 63, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
27 2 0.03
28 23 0.37
29 20 0.32
30 18 0.29
ACGTcount: A:0.29, C:0.28, G:0.14, T:0.28
Consensus pattern (28 bp):
CCGCACACTTAGTGCTATACAATCAAAC
Found at i:29034952 original size:94 final size:93
Alignment explanation
Indices: 29034850--29035023 Score: 219
Period size: 94 Copynumber: 1.9 Consensus size: 93
29034840 ACTCTTAGCT
* *
29034850 GATGCATGTCCCAGACAT-GTCTTACAT-TTGCTATCACT-ATCGAGGCCGGTGCATGTCCCAGA
1 GATGCATGTCCCAGACATGGTCTTAC-TCTGGCTATCA-TAAT-GAGGCCGATGCATGTCCCAGA
29034912 CATGTCTTAAACTAGCACTCGTCTCAATACC
63 CATGTCTTAAACTAGCACTCGTCTCAATACC
* * ** *
29034943 GATGCCATGTCCTAGACATGGTCTTACTCTGGCTCTCATAATTTGGCTGATGCATGTCCCAGACA
1 GATG-CATGTCCCAGACATGGTCTTACTCTGGCTATCATAATGAGGCCGATGCATGTCCCAGACA
*
29035008 TGTCTTACACTAGCAC
65 TGTCTTAAACTAGCAC
29035024 ACACAAGTGA
Statistics
Matches: 69, Mismatches: 8, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
93 4 0.06
94 49 0.71
95 16 0.23
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.29
Consensus pattern (93 bp):
GATGCATGTCCCAGACATGGTCTTACTCTGGCTATCATAATGAGGCCGATGCATGTCCCAGACAT
GTCTTAAACTAGCACTCGTCTCAATACC
Found at i:29036441 original size:18 final size:19
Alignment explanation
Indices: 29036420--29036455 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
29036410 AATAAAGAAA
*
29036420 GGAATTAAA-AAGAAAAGG
1 GGAATAAAATAAGAAAAGG
29036438 GGAATAAAATAAGAAAAG
1 GGAATAAAATAAGAAAAG
29036456 AAAAAGGGGG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.64, C:0.00, G:0.25, T:0.11
Consensus pattern (19 bp):
GGAATAAAATAAGAAAAGG
Found at i:29037849 original size:59 final size:58
Alignment explanation
Indices: 29037753--29037884 Score: 237
Period size: 59 Copynumber: 2.3 Consensus size: 58
29037743 AAAATTGTAC
*
29037753 AGCACTAAGTGTGTGAACTGAAAATATATAGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAACTGAAAATATATAGCACTAAGTGTGCGAGCTGAAAATATAT
*
29037811 AGCACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAACTGAAAA-TATATAGCACTAAGTGTGCGAGCTGAAAATATAT
29037870 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
29037885 GATTCACTAT
Statistics
Matches: 71, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
58 22 0.31
59 49 0.69
ACGTcount: A:0.37, C:0.14, G:0.24, T:0.25
Consensus pattern (58 bp):
AGCACTAAGTGTGCGAACTGAAAATATATAGCACTAAGTGTGCGAGCTGAAAATATAT
Found at i:29037873 original size:88 final size:89
Alignment explanation
Indices: 29037723--29037884 Score: 254
Period size: 88 Copynumber: 1.8 Consensus size: 89
29037713 GACAAGATAG
* * * *
29037723 GCACTAAGTGTGCGGGTTTAAAAATTGTACAGCACTAAGTGTGTGAACTGAAAATATATAGCACT
1 GCACTAAGTGTGCGAGTCTAAAAATTATACAGCACTAAGTGTGCGAACTGAAAATATATAGCACT
29037788 AAGTGTGCGAGCTGAAAATATATA
66 AAGTGTGCGAGCTGAAAATATATA
* * *
29037812 GCACTAAGTGTGCGAG-CTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATATAGCACT
1 GCACTAAGTGTGCGAGTCTAAAAATTATACAGCACTAAGTGTGCGAACTGAAAATATATAGCACT
29037876 AAGTGTGCG
66 AAGTGTGCG
29037885 GATTCACTAT
Statistics
Matches: 66, Mismatches: 7, Indels: 1
0.89 0.09 0.01
Matches are distributed among these distances:
88 51 0.77
89 15 0.23
ACGTcount: A:0.36, C:0.14, G:0.25, T:0.26
Consensus pattern (89 bp):
GCACTAAGTGTGCGAGTCTAAAAATTATACAGCACTAAGTGTGCGAACTGAAAATATATAGCACT
AAGTGTGCGAGCTGAAAATATATA
Found at i:29037896 original size:29 final size:29
Alignment explanation
Indices: 29037753--29037884 Score: 237
Period size: 29 Copynumber: 4.5 Consensus size: 29
29037743 AAAATTGTAC
* *
29037753 AGCACTAAGTGTGTGAACTGAAAATATAT
1 AGCACTAAGTGTGCGAGCTGAAAATATAT
29037782 AGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAGCTGAAAATATAT
29037811 AGCACTAAGTGTGCGAGCTGAAAATTATAT
1 AGCACTAAGTGTGCGAGCTGAAAA-TATAT
29037841 AGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAGCTGAAAATATAT
29037870 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
29037885 GATTCACTAT
Statistics
Matches: 100, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
29 71 0.71
30 29 0.29
ACGTcount: A:0.37, C:0.14, G:0.24, T:0.25
Consensus pattern (29 bp):
AGCACTAAGTGTGCGAGCTGAAAATATAT
Found at i:29043121 original size:27 final size:27
Alignment explanation
Indices: 29043090--29043291 Score: 203
Period size: 27 Copynumber: 7.5 Consensus size: 27
29043080 AGACCCCGGA
**
29043090 TTGTAAAATTATTAAAATACCCTCAGT
1 TTGTAAAATTACCAAAATACCCTCAGT
* * *
29043117 TTGTAAAATTATCAAAATACCCCCGGT
1 TTGTAAAATTACCAAAATACCCTCAGT
** *
29043144 TTGTAAAATTACTGAAATACTCC-CAAT
1 TTGTAAAATTACCAAAATAC-CCTCAGT
* *
29043171 TTGTAAAATTACCGAAATACCCTTAGT
1 TTGTAAAATTACCAAAATACCCTCAGT
29043198 TTGTAAAATTACCAAAATACCCTCAGT
1 TTGTAAAATTACCAAAATACCCTCAGT
* * *
29043225 TTGTAAAATTATCGAAATACCC-CTGT
1 TTGTAAAATTACCAAAATACCCTCAGT
* * *
29043251 AGTGTAAAATTACCCAAATACCCT-TGT
1 -TTGTAAAATTACCAAAATACCCTCAGT
*
29043278 AGTGTAAAATTACC
1 -TTGTAAAATTACC
29043292 GGAATACCTC
Statistics
Matches: 152, Mismatches: 19, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
26 5 0.03
27 145 0.95
28 2 0.01
ACGTcount: A:0.39, C:0.19, G:0.10, T:0.32
Consensus pattern (27 bp):
TTGTAAAATTACCAAAATACCCTCAGT
Found at i:29043163 original size:54 final size:54
Alignment explanation
Indices: 29043083--29043274 Score: 226
Period size: 54 Copynumber: 3.6 Consensus size: 54
29043073 GTCATTAAGA
* ** *
29043083 CCCCGGATTGTAAAATTATTAAAATACCCTCAGTTTGTAAAATTATCAAAATAC
1 CCCCGGTTTGTAAAATTACCAAAATACCCTCAGTTTGTAAAATTATCGAAATAC
** * *
29043137 CCCCGGTTTGTAAAATTACTGAAATACTCC-CAATTTGTAAAATTACCGAAATAC
1 CCCCGGTTTGTAAAATTACCAAAATAC-CCTCAGTTTGTAAAATTATCGAAATAC
***
29043191 CCTTAGTTTGTAAAATTACCAAAATACCCTCAGTTTGTAAAATTATCGAAATA-
1 CCCCGGTTTGTAAAATTACCAAAATACCCTCAGTTTGTAAAATTATCGAAATAC
* * *
29043244 CCCCTGTAGTGTAAAATTACCCAAATACCCT
1 CCCCGGT-TTGTAAAATTACCAAAATACCCT
29043275 TGTAGTGTAA
Statistics
Matches: 117, Mismatches: 18, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
53 6 0.05
54 109 0.93
55 2 0.02
ACGTcount: A:0.38, C:0.21, G:0.10, T:0.31
Consensus pattern (54 bp):
CCCCGGTTTGTAAAATTACCAAAATACCCTCAGTTTGTAAAATTATCGAAATAC
Found at i:29043227 original size:81 final size:81
Alignment explanation
Indices: 29043089--29043291 Score: 250
Period size: 81 Copynumber: 2.5 Consensus size: 81
29043079 AAGACCCCGG
** * * *
29043089 ATTGTAAAATTATTAAAATACCCTCAGTTTGTAAAATTATCAAAATACCCCCGGTTTGTAAAATT
1 ATTGTAAAATTACCAAAATACCCTTAGTTTGTAAAATTACCAAAATACCCCCAGTTTGTAAAATT
29043154 A-CTGAAATACTCCCAAT
66 ATC-GAAATAC-CCCAAT
* *
29043171 -TTGTAAAATTACCGAAATACCCTTAGTTTGTAAAATTACCAAAATACCCTCAGTTTGTAAAATT
1 ATTGTAAAATTACCAAAATACCCTTAGTTTGTAAAATTACCAAAATACCCCCAGTTTGTAAAATT
**
29043235 ATCGAAATACCCCTGT
66 ATCGAAATACCCCAAT
* * *
29043251 AGTGTAAAATTACCCAAATACCCTT-GTAGTGTAAAATTACC
1 ATTGTAAAATTACCAAAATACCCTTAGT-TTGTAAAATTACC
29043292 GGAATACCTC
Statistics
Matches: 106, Mismatches: 12, Indels: 7
0.85 0.10 0.06
Matches are distributed among these distances:
80 6 0.06
81 99 0.93
82 1 0.01
ACGTcount: A:0.39, C:0.19, G:0.10, T:0.32
Consensus pattern (81 bp):
ATTGTAAAATTACCAAAATACCCTTAGTTTGTAAAATTACCAAAATACCCCCAGTTTGTAAAATT
ATCGAAATACCCCAAT
Found at i:29045421 original size:15 final size:17
Alignment explanation
Indices: 29045391--29045423 Score: 52
Period size: 15 Copynumber: 2.1 Consensus size: 17
29045381 GAGAATTTGA
29045391 AAATGAGTTAGAAAAAG
1 AAATGAGTTAGAAAAAG
29045408 AAATGAG-T-GAAAAAG
1 AAATGAGTTAGAAAAAG
29045423 A
1 A
29045424 GGCAAGTGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 8 0.50
16 1 0.06
17 7 0.44
ACGTcount: A:0.61, C:0.00, G:0.24, T:0.15
Consensus pattern (17 bp):
AAATGAGTTAGAAAAAG
Found at i:29049365 original size:27 final size:28
Alignment explanation
Indices: 29049309--29049379 Score: 126
Period size: 27 Copynumber: 2.6 Consensus size: 28
29049299 AAACTTGTAC
29049309 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
29049337 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
29049364 AGCACTAAGTGTGCGA
1 AGCACTAAGTGTGCGA
29049380 ACTCACTATA
Statistics
Matches: 42, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 25 0.60
28 17 0.40
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:29049389 original size:27 final size:27
Alignment explanation
Indices: 29049333--29049390 Score: 80
Period size: 27 Copynumber: 2.1 Consensus size: 27
29049323 GAGTTTGATC
** * *
29049333 ATATAGCACTAAGTGTGCGAGTTGATT
1 ATATAGCACTAAGTGTGCGAACTCACT
29049360 ATATAGCACTAAGTGTGCGAACTCACT
1 ATATAGCACTAAGTGTGCGAACTCACT
29049387 ATAT
1 ATAT
29049391 GCTTTTGAAT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.33, C:0.16, G:0.21, T:0.31
Consensus pattern (27 bp):
ATATAGCACTAAGTGTGCGAACTCACT
Found at i:29051136 original size:30 final size:28
Alignment explanation
Indices: 29051096--29051196 Score: 103
Period size: 28 Copynumber: 3.5 Consensus size: 28
29051086 GACAAGATTG
* * *
29051096 GCACTGAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--AATTATACA
* *
29051126 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTAATTATACA
* * *
29051154 GCACTAAGTGTGCGAGCTGAATATATATA
1 GCACTAAGTGTGCGAGTTTAAT-TATACA
29051183 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
29051197 GATTCACTAT
Statistics
Matches: 62, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
28 25 0.40
29 20 0.32
30 17 0.27
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTAATTATACA
Found at i:29051160 original size:28 final size:29
Alignment explanation
Indices: 29051125--29051196 Score: 112
Period size: 29 Copynumber: 2.5 Consensus size: 29
29051115 AAAATTGTAC
*
29051125 AGCACTAAGTGTGCGAGTTTG-AT-TATAT
1 AGCACTAAGTGTGCGAG-CTGAATATATAT
29051153 AGCACTAAGTGTGCGAGCTGAATATATAT
1 AGCACTAAGTGTGCGAGCTGAATATATAT
29051182 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
29051197 GATTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
27 2 0.05
28 19 0.46
29 20 0.49
ACGTcount: A:0.31, C:0.14, G:0.26, T:0.29
Consensus pattern (29 bp):
AGCACTAAGTGTGCGAGCTGAATATATAT
Found at i:29060568 original size:27 final size:28
Alignment explanation
Indices: 29060512--29060581 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
29060502 AAACTTGTAC
29060512 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
29060540 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
29060567 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
29060582 GACTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:29060592 original size:27 final size:27
Alignment explanation
Indices: 29060512--29060593 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
29060502 AAACTTGTAC
* *
29060512 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
29060540 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
29060567 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
29060594 GCTTTTGAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
26 1 0.02
27 30 0.61
28 18 0.37
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:29072189 original size:29 final size:29
Alignment explanation
Indices: 29072155--29072286 Score: 140
Period size: 29 Copynumber: 4.6 Consensus size: 29
29072145 TACTCGATTT
** * *
29072155 CGCACACTTAGTGCCATGCGATTT-AAGCC
1 CGCACACTTAGTGCCAT-ATATTTCCAGCA
* **** * *
29072184 CGCACACATAGTGCCATGCCCTTCGAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
29072213 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
29072242 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
29072271 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
29072287 ATCTCGTCAC
Statistics
Matches: 86, Mismatches: 16, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
28 2 0.02
29 84 0.98
ACGTcount: A:0.25, C:0.33, G:0.17, T:0.25
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:29076756 original size:39 final size:39
Alignment explanation
Indices: 29076644--29076837 Score: 253
Period size: 39 Copynumber: 4.9 Consensus size: 39
29076634 TCGTTCAAAC
* * ** * *
29076644 GCCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAAT
1 GCCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATT
* *
29076684 GCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATT
1 GCCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATT
* * *
29076724 GCCTTCAGGCTTAGCCCGGATATCATAGCTCGCACCATT
1 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
29076763 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
* *
29076802 GCCTTCGGGCTTAGCCCGGATATCACAATTCGCACA
1 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACA
29076838 TTCATACACA
Statistics
Matches: 136, Mismatches: 18, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
39 96 0.71
40 40 0.29
ACGTcount: A:0.24, C:0.32, G:0.21, T:0.23
Consensus pattern (39 bp):
GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
Found at i:29079117 original size:2 final size:2
Alignment explanation
Indices: 29079110--29079137 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
29079100 ACCAGAACAG
29079110 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
29079138 GTGGCGAAGC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:29079218 original size:27 final size:26
Alignment explanation
Indices: 29079170--29079221 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
29079160 GCGAGGCTGC
*
29079170 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
29079196 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
29079222 TTGTAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:29082880 original size:24 final size:26
Alignment explanation
Indices: 29082824--29082882 Score: 77
Period size: 26 Copynumber: 2.3 Consensus size: 26
29082814 GTGACGAAGT
*
29082824 CACCAGATACAGATATTATGGCTAGGC
1 CACCAGATACAGATATTATCGC-AGGC
*
29082851 CACCAGA-ACAGATATTGTCGC-GGC
1 CACCAGATACAGATATTATCGCAGGC
29082875 CACCAGAT
1 CACCAGAT
29082883 TGCAGCGAGG
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
24 10 0.34
26 12 0.41
27 7 0.24
ACGTcount: A:0.32, C:0.27, G:0.22, T:0.19
Consensus pattern (26 bp):
CACCAGATACAGATATTATCGCAGGC
Found at i:29090092 original size:27 final size:26
Alignment explanation
Indices: 29090044--29090103 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
29090034 GCGAGGCTAC
*
29090044 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
29090071 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
29090097 CAGATAT
1 CAGATAT
29090104 ATATATATAT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:29090107 original size:2 final size:2
Alignment explanation
Indices: 29090100--29090129 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
29090090 ACCAGAACAG
29090100 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
29090130 GTGGCGAAGC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:29090210 original size:27 final size:26
Alignment explanation
Indices: 29090162--29090213 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
29090152 GCGAGGCTGC
*
29090162 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
29090188 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
29090214 TTGTAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:29095099 original size:40 final size:40
Alignment explanation
Indices: 29095054--29095220 Score: 162
Period size: 40 Copynumber: 4.2 Consensus size: 40
29095044 CGGAATATAA
29095054 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * *
29095094 CCGGATAGAAT-ATCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCA-CTAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
29095134 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * *
29095174 CCGGATATAATTTCCAGCA-AATTGTCTTCGGGAT-TTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGG-TCTTAGC
29095213 CCGGATAT
1 CCGGATAT
29095221 CATTCAATTT
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 26 0.25
40 78 0.74
41 1 0.01
ACGTcount: A:0.24, C:0.26, G:0.23, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:29097265 original size:50 final size:51
Alignment explanation
Indices: 29097178--29097275 Score: 137
Period size: 50 Copynumber: 1.9 Consensus size: 51
29097168 TTGCATGACT
* *
29097178 TAATTTAATAATGCAAACTTTAAATAACATGGGGTTACATAATGCATGTAA
1 TAATTTAATAATGCAAACTTTAAATAACATGGAGTTACAAAATGCATGTAA
* *
29097229 TAATTT-ATGATGCAAAC-TTAACTAACATGAGAGTTACAAAATGCATG
1 TAATTTAATAATGCAAACTTTAAATAACATG-GAGTTACAAAATGCATG
29097276 ACTTTATTAA
Statistics
Matches: 42, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
49 11 0.26
50 25 0.60
51 6 0.14
ACGTcount: A:0.43, C:0.11, G:0.14, T:0.32
Consensus pattern (51 bp):
TAATTTAATAATGCAAACTTTAAATAACATGGAGTTACAAAATGCATGTAA
Found at i:29098857 original size:46 final size:46
Alignment explanation
Indices: 29098799--29098974 Score: 164
Period size: 46 Copynumber: 3.8 Consensus size: 46
29098789 TATTTGGGCA
* * *
29098799 TCCGAACTCGTTGAGTTGAGCCCGAGTTCACTTATGGATGCAAATG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * *
29098845 TCCGCA-CTCGTTGAGTTGAGTCCGAGTT---TGA-GAGATGTAACTAGGCA
1 TCCG-AGCTCGTTGAGTTGAGTCCGAGTTCACTTATG-GATGCAA--A--CG
* * *
29098892 TCCGAGCTTGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
29098938 CCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
29098975 GCGGGTTACA
Statistics
Matches: 105, Mismatches: 14, Indels: 22
0.74 0.10 0.16
Matches are distributed among these distances:
42 1 0.01
43 8 0.08
45 1 0.01
46 61 0.58
47 26 0.25
48 1 0.01
50 6 0.06
51 1 0.01
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:29098954 original size:93 final size:93
Alignment explanation
Indices: 29098795--29098965 Score: 254
Period size: 93 Copynumber: 1.8 Consensus size: 93
29098785 AGGATATTTG
* * * *
29098795 GGCATCCGAACTCGTTGAGTTGAGCCCGAGTTCACTTATGGATGCAAATGTCCGCACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGCCCGAGTTCACTTATGGATACAAACGCCCGCACTCATTGAG
29098860 TTGAGTCCGAGTTTGAGAGATGTAACTA
66 TTGAGTCCGAGTTTGAGAGATGTAACTA
* * * *
29098888 GGCATCCGAGCTTGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACGCCCG-AGCTCATTGA
1 GGCATCCGAACTCGTTGAGTTGAGCCCGAGTTCACTTATGGATACAAACGCCCGCA-CTCATTGA
29098952 GTTGAGTCCGAGTT
65 GTTGAGTCCGAGTT
29098966 CACTTATGGG
Statistics
Matches: 69, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
92 1 0.01
93 68 0.99
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGCCCGAGTTCACTTATGGATACAAACGCCCGCACTCATTGAG
TTGAGTCCGAGTTTGAGAGATGTAACTA
Found at i:29102457 original size:24 final size:25
Alignment explanation
Indices: 29102415--29102471 Score: 62
Period size: 24 Copynumber: 2.2 Consensus size: 25
29102405 GGCGGAATTA
* *
29102415 GCTAAGTGAAATGATGATGGAAATG
1 GCTAAGTGAAATGAAGATGAAAATG
*
29102440 GCTAGGTG-AATGAAGATGAAAATTCG
1 GCTAAGTGAAATGAAGATGAAAA-T-G
29102466 GCTAAG
1 GCTAAG
29102472 GTTTGGAAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
24 12 0.46
25 8 0.31
26 6 0.23
ACGTcount: A:0.39, C:0.07, G:0.32, T:0.23
Consensus pattern (25 bp):
GCTAAGTGAAATGAAGATGAAAATG
Found at i:29103853 original size:19 final size:19
Alignment explanation
Indices: 29103829--29103921 Score: 95
Period size: 19 Copynumber: 5.1 Consensus size: 19
29103819 AATAAATTAC
*
29103829 TCATCTTAGTTAATTGAGT
1 TCATCTTAGTTAATTAAGT
29103848 TCATCTTAGTTAATTAAGT
1 TCATCTTAGTTAATTAAGT
* ***
29103867 TC--CTGGAACAAATT-AG-
1 TCATCT-TAGTTAATTAAGT
29103883 TCATCTTAGTTAATTAAGT
1 TCATCTTAGTTAATTAAGT
*
29103902 TCATCTTAGTTAATTTAGT
1 TCATCTTAGTTAATTAAGT
29103921 T
1 T
29103922 GCTGGAATAA
Statistics
Matches: 59, Mismatches: 10, Indels: 10
0.75 0.13 0.13
Matches are distributed among these distances:
16 2 0.03
17 9 0.15
18 9 0.15
19 39 0.66
ACGTcount: A:0.30, C:0.12, G:0.13, T:0.45
Consensus pattern (19 bp):
TCATCTTAGTTAATTAAGT
Found at i:29103866 original size:54 final size:54
Alignment explanation
Indices: 29103803--29103931 Score: 213
Period size: 54 Copynumber: 2.4 Consensus size: 54
29103793 TTTAGTTTAA
*
29103803 TTAATTAAGTTGCTGGAATAAATTACTCATCTTAGTTAATTGAGTTCATCTTAG
1 TTAATTAAGTTGCTGGAATAAATTACTCATCTTAGTTAATTAAGTTCATCTTAG
* * *
29103857 TTAATTAAGTTCCTGGAACAAATTAGTCATCTTAGTTAATTAAGTTCATCTTAG
1 TTAATTAAGTTGCTGGAATAAATTACTCATCTTAGTTAATTAAGTTCATCTTAG
*
29103911 TTAATTTAGTTGCTGGAATAA
1 TTAATTAAGTTGCTGGAATAA
29103932 TTTATTGTTG
Statistics
Matches: 68, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
54 68 1.00
ACGTcount: A:0.33, C:0.11, G:0.15, T:0.42
Consensus pattern (54 bp):
TTAATTAAGTTGCTGGAATAAATTACTCATCTTAGTTAATTAAGTTCATCTTAG
Found at i:29106333 original size:18 final size:18
Alignment explanation
Indices: 29106312--29106368 Score: 62
Period size: 18 Copynumber: 3.2 Consensus size: 18
29106302 AAAGTGATAT
29106312 AAAAGAAAAAGAAAATGA
1 AAAAGAAAAAGAAAATGA
* ***
29106330 AAAAGAGAAAGATTGTGA
1 AAAAGAAAAAGAAAATGA
29106348 AAAAG-AAAAGAAAATTGA
1 AAAAGAAAAAGAAAA-TGA
29106366 AAA
1 AAA
29106369 GGAGAGTTAG
Statistics
Matches: 30, Mismatches: 8, Indels: 2
0.75 0.20 0.05
Matches are distributed among these distances:
17 5 0.17
18 25 0.83
ACGTcount: A:0.70, C:0.00, G:0.19, T:0.11
Consensus pattern (18 bp):
AAAAGAAAAAGAAAATGA
Found at i:29107427 original size:15 final size:15
Alignment explanation
Indices: 29107395--29107423 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
29107385 ATTTTTTGTG
29107395 TTTATTATGTGTGAA
1 TTTATTATGTGTGAA
29107410 TTTA-TATGTGTGAA
1 TTTATTATGTGTGAA
29107424 ATTTTTGTGT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.28, C:0.00, G:0.21, T:0.52
Consensus pattern (15 bp):
TTTATTATGTGTGAA
Found at i:29108586 original size:43 final size:43
Alignment explanation
Indices: 29108535--29108705 Score: 159
Period size: 43 Copynumber: 4.0 Consensus size: 43
29108525 CATAGAATTT
29108535 TCGATATGTGTATT-CATGTAAGACCACGTTTGGGACATTGGCA
1 TCGATATGTG-ATTACATGTAAGACCACGTTTGGGACATTGGCA
* * * * *
29108578 TTGATATGTGATTACGTGTAAGACCATGTTTGGGACATCGACA
1 TCGATATGTGATTACATGTAAGACCACGTTTGGGACATTGGCA
* ** ** **
29108621 TCG-TATTTGATT-CATGTAAGACCTTGCATGGGACAGGGGCA
1 TCGATATGTGATTACATGTAAGACCACGTTTGGGACATTGGCA
* * * **
29108662 TCGAGATATGATTACATGTAAGACCACGTCTGGGATGTTGGCA
1 TCGATATGTGATTACATGTAAGACCACGTTTGGGACATTGGCA
29108705 T
1 T
29108706 TGTACGGTAT
Statistics
Matches: 101, Mismatches: 24, Indels: 6
0.77 0.18 0.05
Matches are distributed among these distances:
41 25 0.25
42 18 0.18
43 58 0.57
ACGTcount: A:0.26, C:0.16, G:0.27, T:0.31
Consensus pattern (43 bp):
TCGATATGTGATTACATGTAAGACCACGTTTGGGACATTGGCA
Found at i:29110188 original size:37 final size:37
Alignment explanation
Indices: 29110138--29110214 Score: 154
Period size: 37 Copynumber: 2.1 Consensus size: 37
29110128 ATAGAGTAAA
29110138 ATGGAAGTAGAAATTAAATAAAGCATAAGTATTTAGC
1 ATGGAAGTAGAAATTAAATAAAGCATAAGTATTTAGC
29110175 ATGGAAGTAGAAATTAAATAAAGCATAAGTATTTAGC
1 ATGGAAGTAGAAATTAAATAAAGCATAAGTATTTAGC
29110212 ATG
1 ATG
29110215 TTTTGTATTT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 40 1.00
ACGTcount: A:0.48, C:0.05, G:0.19, T:0.27
Consensus pattern (37 bp):
ATGGAAGTAGAAATTAAATAAAGCATAAGTATTTAGC
Found at i:29112153 original size:46 final size:46
Alignment explanation
Indices: 29112103--29112278 Score: 153
Period size: 46 Copynumber: 3.8 Consensus size: 46
29112093 TGGTTGAGCA
29112103 TCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAATG
* * * *
29112149 TCCGAACTCGTTGAGTTGAGTCCAAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAA-T--G
* * ** *
29112194 CATCCGAGCTCGTTGAGTTCAGTCTGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAATG
* * * * *
29112242 CCCGAGCTCATTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGG
29112279 GCGGGTTACA
Statistics
Matches: 103, Mismatches: 18, Indels: 18
0.74 0.13 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 61 0.59
47 25 0.24
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.22, C:0.21, G:0.27, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAATG
Found at i:29112259 original size:93 final size:93
Alignment explanation
Indices: 29112100--29112271 Score: 263
Period size: 93 Copynumber: 1.8 Consensus size: 93
29112090 GGATGGTTGA
* * * *
29112100 GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTCAGTCCAAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
29112165 TGAGTCCAAGTTCGTGAAATGTAACTAG
66 TGAGTCCAAGTTCGTGAAATGTAACTAG
* ** *
29112193 GCATCCGAGCTCGTTGAGTTCAGTCTGAGTTCACTTATGGATGCGAACGCCCGAGCTCATTGAGT
1 GCATCCGAACTCGTTGAGTTCAGTCCAAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
*
29112258 TGAGTCCGAGTTCG
66 TGAGTCCAAGTTCG
29112272 CTTATGGGCG
Statistics
Matches: 70, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTCAGTCCAAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
TGAGTCCAAGTTCGTGAAATGTAACTAG
Found at i:29123296 original size:40 final size:40
Alignment explanation
Indices: 29123168--29123318 Score: 128
Period size: 40 Copynumber: 3.8 Consensus size: 40
29123158 ATAACCATGT
* * * *
29123168 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC-
1 GCACAATTGCCTTCGGGTCTTAACCCGGATAAAATCTC-CA
* ** ** * *
29123208 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATTGCCTTCGGGTCTTAACCCGGATAAAATCTCCA
*
29123248 GCACAATTGCCTTCGGGTCTTAACCCGGATAAAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAACCCGGATAAAATCTCCA
* *
29123288 GCATAATTGTCTTCGGGAT-TTAACCCGGATA
1 GCACAATTGCCTTCGGG-TCTTAACCCGGATA
29123319 TCATTCAATT
Statistics
Matches: 90, Mismatches: 17, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
39 2 0.02
40 85 0.94
41 3 0.03
ACGTcount: A:0.24, C:0.26, G:0.23, T:0.26
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAACCCGGATAAAATCTCCA
Found at i:29123302 original size:80 final size:80
Alignment explanation
Indices: 29123168--29123317 Score: 189
Period size: 80 Copynumber: 1.9 Consensus size: 80
29123158 ATAACCATGT
* * *
29123168 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAAAATGTCTCGCACGAATGCCTTCGGGAT-TTAAC
29123232 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * *
29123248 GCACAATTGCCTTCGGGTCTTAACCCGGATAAAATTTC-CAGCA-TAATTGTCTTCGGGATTTAA
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAAAATGTCTC-GCACGAA-TGCCTTCGGGATTTAA
29123311 CCCGGAT
64 CCCGGAT
29123318 ATCATTCAAT
Statistics
Matches: 60, Mismatches: 7, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
79 3 0.05
80 56 0.93
81 1 0.02
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAAAATGTCTCGCACGAATGCCTTCGGGATTTAACC
CGGATGTAGCCACTA
Found at i:29137577 original size:47 final size:47
Alignment explanation
Indices: 29137490--29137584 Score: 118
Period size: 47 Copynumber: 2.0 Consensus size: 47
29137480 AGAAATCGTA
* **
29137490 TGCTGACTTGAAATGAAAAGATATGGAGGTTCAGAGAGGGGACAAAG
1 TGCTGACTTGAAATGAAAAGACATAAAGGTTCAGAGAGGGGACAAAG
* * * * *
29137537 TGCTGATTTGAAATGAAATGACATAAAGTTTTAGATAGGGGACAAAG
1 TGCTGACTTGAAATGAAAAGACATAAAGGTTCAGAGAGGGGACAAAG
29137584 T
1 T
29137585 CTTTTTGAAA
Statistics
Matches: 40, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
47 40 1.00
ACGTcount: A:0.39, C:0.07, G:0.29, T:0.24
Consensus pattern (47 bp):
TGCTGACTTGAAATGAAAAGACATAAAGGTTCAGAGAGGGGACAAAG
Found at i:29137759 original size:27 final size:27
Alignment explanation
Indices: 29137721--29137774 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
29137711 GCCACCTGAG
29137721 TTAGAAAAGATTCATAACATATTCCAT
1 TTAGAAAAGATTCATAACATATTCCAT
29137748 TTAGAAAAGATTCATAACATATTCCAT
1 TTAGAAAAGATTCATAACATATTCCAT
29137775 GTTTTGATGC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.44, C:0.15, G:0.07, T:0.33
Consensus pattern (27 bp):
TTAGAAAAGATTCATAACATATTCCAT
Found at i:29139019 original size:16 final size:16
Alignment explanation
Indices: 29139000--29139030 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
29138990 GAATATGTTT
*
29139000 AAATTAAGAACCAAAG
1 AAATTAAAAACCAAAG
29139016 AAATTAAAAACCAAA
1 AAATTAAAAACCAAA
29139031 ATATCGATTA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.68, C:0.13, G:0.06, T:0.13
Consensus pattern (16 bp):
AAATTAAAAACCAAAG
Found at i:29139412 original size:41 final size:43
Alignment explanation
Indices: 29139334--29139444 Score: 136
Period size: 41 Copynumber: 2.6 Consensus size: 43
29139324 CATTGATATG
* *
29139334 TGATTACGTGTAAGACCATGTCTGGGACAGCGACATCG-TATT
1 TGATTACGTGTAAGACCATGTCTGGGACAGCGACATCGAGATA
* * * *
29139376 TGATT-CGTGTAAGACCCTGTCTGGGATAGTGGCATCGAGATA
1 TGATTACGTGTAAGACCATGTCTGGGACAGCGACATCGAGATA
* *
29139418 TGATTACATGTAAGACCAGGTCTGGGA
1 TGATTACGTGTAAGACCATGTCTGGGA
29139445 GTTGGCATTG
Statistics
Matches: 58, Mismatches: 9, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
41 28 0.48
42 12 0.21
43 18 0.31
ACGTcount: A:0.26, C:0.17, G:0.29, T:0.28
Consensus pattern (43 bp):
TGATTACGTGTAAGACCATGTCTGGGACAGCGACATCGAGATA
Found at i:29139601 original size:51 final size:51
Alignment explanation
Indices: 29139541--29139644 Score: 208
Period size: 51 Copynumber: 2.0 Consensus size: 51
29139531 GTGTAAATCG
29139541 AGCTAAGTGATCAAGTATGTGATAGTTGATTACCTATTTGAAAATAAGGTA
1 AGCTAAGTGATCAAGTATGTGATAGTTGATTACCTATTTGAAAATAAGGTA
29139592 AGCTAAGTGATCAAGTATGTGATAGTTGATTACCTATTTGAAAATAAGGTA
1 AGCTAAGTGATCAAGTATGTGATAGTTGATTACCTATTTGAAAATAAGGTA
29139643 AG
1 AG
29139645 TTGGCTATTT
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
51 53 1.00
ACGTcount: A:0.38, C:0.08, G:0.22, T:0.33
Consensus pattern (51 bp):
AGCTAAGTGATCAAGTATGTGATAGTTGATTACCTATTTGAAAATAAGGTA
Found at i:29142425 original size:9 final size:9
Alignment explanation
Indices: 29142406--29142449 Score: 61
Period size: 9 Copynumber: 4.7 Consensus size: 9
29142396 AGTCTAATAA
29142406 GTGTTTAAAT
1 GTGTTT-AAT
29142416 GTGTTTAAT
1 GTGTTTAAT
29142425 GTGTTTAAT
1 GTGTTTAAT
*
29142434 GAGTTTTAAT
1 GTG-TTTAAT
29142444 GTGTTT
1 GTGTTT
29142450 GTTTGTAGGT
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
9 17 0.55
10 14 0.45
ACGTcount: A:0.23, C:0.00, G:0.23, T:0.55
Consensus pattern (9 bp):
GTGTTTAAT
Found at i:29142430 original size:19 final size:19
Alignment explanation
Indices: 29142406--29142449 Score: 63
Period size: 19 Copynumber: 2.3 Consensus size: 19
29142396 AGTCTAATAA
*
29142406 GTGTTTAAATGTG-TTTAAT
1 GTGTTT-AATGAGTTTTAAT
29142425 GTGTTTAATGAGTTTTAAT
1 GTGTTTAATGAGTTTTAAT
29142444 GTGTTT
1 GTGTTT
29142450 GTTTGTAGGT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 5 0.22
19 18 0.78
ACGTcount: A:0.23, C:0.00, G:0.23, T:0.55
Consensus pattern (19 bp):
GTGTTTAATGAGTTTTAAT
Found at i:29143544 original size:17 final size:17
Alignment explanation
Indices: 29143522--29143584 Score: 58
Period size: 17 Copynumber: 3.7 Consensus size: 17
29143512 GCAAAGGTAC
29143522 ATGCATGGATGGCTTCA
1 ATGCATGGATGGCTTCA
* *
29143539 ATGCATGG-TGAGGTAC-
1 ATGCATGGATG-GCTTCA
*
29143555 ATGCATGGACGGCTTCA
1 ATGCATGGATGGCTTCA
*
29143572 ATGTATGGTATGG
1 ATGCATGG-ATGG
29143585 TGATGTTTGG
Statistics
Matches: 35, Mismatches: 7, Indels: 7
0.71 0.14 0.14
Matches are distributed among these distances:
16 13 0.37
17 19 0.54
18 3 0.09
ACGTcount: A:0.24, C:0.14, G:0.33, T:0.29
Consensus pattern (17 bp):
ATGCATGGATGGCTTCA
Found at i:29143555 original size:33 final size:33
Alignment explanation
Indices: 29143516--29143580 Score: 112
Period size: 33 Copynumber: 2.0 Consensus size: 33
29143506 TTTAATGCAA
*
29143516 AGGTACATGCATGGATGGCTTCAATGCATGGTG
1 AGGTACATGCATGGACGGCTTCAATGCATGGTG
*
29143549 AGGTACATGCATGGACGGCTTCAATGTATGGT
1 AGGTACATGCATGGACGGCTTCAATGCATGGT
29143581 ATGGTGATGT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.25, C:0.15, G:0.32, T:0.28
Consensus pattern (33 bp):
AGGTACATGCATGGACGGCTTCAATGCATGGTG
Found at i:29143560 original size:16 final size:17
Alignment explanation
Indices: 29143516--29143563 Score: 55
Period size: 16 Copynumber: 2.9 Consensus size: 17
29143506 TTTAATGCAA
29143516 AGGTACATGCATGGATG
1 AGGTACATGCATGGATG
* *
29143533 -GCTTCAATGCATGG-TG
1 AGGTAC-ATGCATGGATG
29143549 AGGTACATGCATGGA
1 AGGTACATGCATGGA
29143564 CGGCTTCAAT
Statistics
Matches: 24, Mismatches: 4, Indels: 6
0.71 0.12 0.18
Matches are distributed among these distances:
16 13 0.54
17 11 0.46
ACGTcount: A:0.27, C:0.15, G:0.33, T:0.25
Consensus pattern (17 bp):
AGGTACATGCATGGATG
Found at i:29144702 original size:30 final size:30
Alignment explanation
Indices: 29144666--29144726 Score: 88
Period size: 30 Copynumber: 2.0 Consensus size: 30
29144656 TTCCCGAGCC
29144666 TAGGGGCAAAA-GTGTAATTATGCAAAAGTT
1 TAGGGGCAAAATG-GTAATTATGCAAAAGTT
* *
29144696 TAGGGGCAAAATGGTAATTTTGCCAAAGTT
1 TAGGGGCAAAATGGTAATTATGCAAAAGTT
29144726 T
1 T
29144727 GTATTAAAGG
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
30 27 0.96
31 1 0.04
ACGTcount: A:0.36, C:0.08, G:0.26, T:0.30
Consensus pattern (30 bp):
TAGGGGCAAAATGGTAATTATGCAAAAGTT
Found at i:29145439 original size:49 final size:50
Alignment explanation
Indices: 29145372--29145618 Score: 282
Period size: 49 Copynumber: 5.0 Consensus size: 50
29145362 AGCTATTGTG
* * *
29145372 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAGTT
* * * *
29145422 -GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTGATAACTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGAT-AGTT
* * * * *
29145472 CGATCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTATCAGATGGTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAGTT
* * * * * * *
29145522 AGGTTACGTGTGTAATACTAACTGCAGGCTACTACGTGTACCGGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAGTT
* *
29145572 -GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAG
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAG
29145619 CTTCGGCTAC
Statistics
Matches: 161, Mismatches: 34, Indels: 5
0.81 0.17 0.03
Matches are distributed among these distances:
49 78 0.48
50 44 0.27
51 39 0.24
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.30
Consensus pattern (50 bp):
AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAGTT
Found at i:29151162 original size:49 final size:49
Alignment explanation
Indices: 29151103--29151341 Score: 262
Period size: 49 Copynumber: 4.8 Consensus size: 49
29151093 TGAGGTCACG
* *
29151103 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTGGTTGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTGGTCGCA
* * * * * * *
29151152 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTGATAACTTCGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAT-AGTT-GGTCGCA
* * * * * * *
29151203 TGTTTAATACTAAATGCAGGCTACTACGTGTATCAGATGGTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTT-GGTCGCA
* *
29151253 TATGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTGGTCGCA
* * *
29151302 TGTGTAGTACTAAGTGCAGGCTACTATGCGCACCAGATAG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAG
29151342 CTTCGGCTAC
Statistics
Matches: 154, Mismatches: 34, Indels: 4
0.80 0.18 0.02
Matches are distributed among these distances:
49 75 0.49
50 45 0.29
51 34 0.22
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTGGTCGCA
Found at i:29160642 original size:49 final size:48
Alignment explanation
Indices: 29160569--29160698 Score: 167
Period size: 49 Copynumber: 2.7 Consensus size: 48
29160559 ATAAGTTGCC
29160569 GATGCCATGTCCCAGACATGGTCTTACACTAGCTATC-ATCAT-CGAGGCT
1 GATG-CATGTCCCAGACATGGTCTTACACTAGCTATCGAT-ATAC-AGGCT
* * *
29160618 GATGTCATGTCCCAGACATGGTCTTATACTAGCTCTCGTATATACATGCT
1 GATG-CATGTCCCAGACATGGTCTTACACTAGCTATCG-ATATACAGGCT
29160668 GATGCATGTCCCAGACAT-GTCTTACACTAGC
1 GATGCATGTCCCAGACATGGTCTTACACTAGC
29160699 ACAACTCTTA
Statistics
Matches: 73, Mismatches: 5, Indels: 7
0.86 0.06 0.08
Matches are distributed among these distances:
48 12 0.16
49 48 0.66
50 10 0.14
51 3 0.04
ACGTcount: A:0.25, C:0.27, G:0.19, T:0.29
Consensus pattern (48 bp):
GATGCATGTCCCAGACATGGTCTTACACTAGCTATCGATATACAGGCT
Found at i:29168257 original size:141 final size:141
Alignment explanation
Indices: 29167990--29168254 Score: 337
Period size: 139 Copynumber: 1.9 Consensus size: 141
29167980 GCTGATGCCA
*
29167990 TGTCCCAGACATGGTCTTACACTATCTATCATCATCGAGGCTAATCCCATGTCCCAGACATGGTC
1 TGTCCCAGACATCGTCTTACACTATCTATCATCATCGAGGCTAATCCCATGTCCCAGACATGGTC
* * *
29168055 TTATACCAGCTCTCGTATATACGTGCTGATGCATGTCCCAAACATGTCTTACACTAGCACAACTC
66 TTACACCAGCACTCGTATATA-GTGCCGATGCATGTCCCAAACATGTCTTACACTAGCACAACTC
29168120 TTAGCCGATGTG
130 TTAGCCGATGTG
* *
29168132 TGTCCCAGACA-CGTCTTACACT-TGCTATCATCGA-CGAGGCTGAT-GCATG-CCCTAGACAT-
1 TGTCCCAGACATCGTCTTACACTAT-CTATCATC-ATCGAGGCTAATCCCATGTCCC-AGACATG
* * * *
29168191 GTCTTACACTAGCACTCGTCTCT-GTGCCGATGCCATGTCCCAAACATGGTCTTACACTGGCACA
63 GTCTTACACCAGCACTCGTATATAGTGCCGATG-CATGTCCCAAACAT-GTCTTACACTAGCACA
29168255 CAAGAAGTCT
Statistics
Matches: 108, Mismatches: 10, Indels: 13
0.82 0.08 0.10
Matches are distributed among these distances:
137 8 0.07
138 14 0.13
139 36 0.33
140 11 0.10
141 27 0.25
142 12 0.11
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.28
Consensus pattern (141 bp):
TGTCCCAGACATCGTCTTACACTATCTATCATCATCGAGGCTAATCCCATGTCCCAGACATGGTC
TTACACCAGCACTCGTATATAGTGCCGATGCATGTCCCAAACATGTCTTACACTAGCACAACTCT
TAGCCGATGTG
Found at i:29170079 original size:39 final size:39
Alignment explanation
Indices: 29170024--29170100 Score: 136
Period size: 39 Copynumber: 2.0 Consensus size: 39
29170014 ATGCAGAACA
*
29170024 CATATTAATGATGTTCAAACTATGACATAATTAAAGACT
1 CATATTAATGAAGTTCAAACTATGACATAATTAAAGACT
*
29170063 CATATTAATTAAGTTCAAACTATGACATAATTAAAGAC
1 CATATTAATGAAGTTCAAACTATGACATAATTAAAGAC
29170101 ACAAACTAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 36 1.00
ACGTcount: A:0.45, C:0.13, G:0.09, T:0.32
Consensus pattern (39 bp):
CATATTAATGAAGTTCAAACTATGACATAATTAAAGACT
Found at i:29172912 original size:46 final size:44
Alignment explanation
Indices: 29172768--29172935 Score: 176
Period size: 46 Copynumber: 3.6 Consensus size: 44
29172758 TGTGTGAGCT
* * *
29172768 AGTGTAAGACATGTCTGGGACATGCATCGACCACATTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGACCTCA-GACGA-AGCC
* * *
29172814 AGTGTAAGACCATGTCTGGGACATTGCATCGACATTAAGACG-AGTTCT
1 AGTGTAAGA-CATGTCTGGGACA-TGCATCGAC-CTCAGACGAAG--CC
*
29172862 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGACGTAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGACCTC-AGACG-AAGCC
*
29172908 AGTGTAAGACATGTTTGGGACATGCATC
1 AGTGTAAGACATGTCTGGGACATGCATC
29172936 AACTAAGAGA
Statistics
Matches: 103, Mismatches: 11, Indels: 16
0.79 0.08 0.12
Matches are distributed among these distances:
45 1 0.01
46 52 0.50
47 26 0.25
48 23 0.22
49 1 0.01
ACGTcount: A:0.29, C:0.20, G:0.27, T:0.24
Consensus pattern (44 bp):
AGTGTAAGACATGTCTGGGACATGCATCGACCTCAGACGAAGCC
Found at i:29173881 original size:55 final size:55
Alignment explanation
Indices: 29173815--29173933 Score: 175
Period size: 55 Copynumber: 2.2 Consensus size: 55
29173805 GCAGAGACAC
* *
29173815 GGCCATGTGTCTCAGTCATGTGATGGACACAGCCTAGCACACGGGCATGTACCTT
1 GGCCGTGTGTCTCAGCCATGTGATGGACACAGCCTAGCACACGGGCATGTACCTT
* * * *
29173870 GGCCGTGTGTCTCAGCCCTGTGATGGACACGGCCTAGCACACGGGCGTGTGCCTT
1 GGCCGTGTGTCTCAGCCATGTGATGGACACAGCCTAGCACACGGGCATGTACCTT
*
29173925 GGCTGTGTG
1 GGCCGTGTG
29173934 ACATTTTGGA
Statistics
Matches: 57, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
55 57 1.00
ACGTcount: A:0.16, C:0.28, G:0.33, T:0.24
Consensus pattern (55 bp):
GGCCGTGTGTCTCAGCCATGTGATGGACACAGCCTAGCACACGGGCATGTACCTT
Found at i:29178334 original size:46 final size:45
Alignment explanation
Indices: 29178159--29178331 Score: 177
Period size: 46 Copynumber: 3.7 Consensus size: 45
29178149 TCACTTGTGT
* * * *
29178159 GAGCTAGTGTAAGACATGTCTAGGACATGCATCAGCCATATTATGA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCAGCCTTA-GATGA
* * * * *
29178205 GAGCCAATGTAAGACCATGTCTGGGCCATGATATCAGCATTCAGACGA
1 GAGCCAGTGTAAGA-CATGTCTGGGACATG-CATCAGCCTT-AGATGA
* * *
29178253 GTGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTTGAGATGTA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCAGCCTT-AGATG-A
29178300 -AGCCAGTGTAAGACATGTCTGGGACATGCATC
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATC
29178332 GGCTACAAGA
Statistics
Matches: 103, Mismatches: 20, Indels: 8
0.79 0.15 0.06
Matches are distributed among these distances:
46 53 0.51
47 28 0.27
48 21 0.20
49 1 0.01
ACGTcount: A:0.29, C:0.20, G:0.27, T:0.24
Consensus pattern (45 bp):
GAGCCAGTGTAAGACATGTCTGGGACATGCATCAGCCTTAGATGA
Found at i:29184935 original size:96 final size:97
Alignment explanation
Indices: 29184771--29185099 Score: 396
Period size: 96 Copynumber: 3.4 Consensus size: 97
29184761 TGAATTGTCA
* * * ** * ** * *
29184771 ATGCCATGTTCCAAACATGGTCTTACACTAGCTTACATGTTGAGGTCGATGCCATGTCCCAGACA
1 ATGCCATATCCCAGACATGGTCTTACACTAGCACACATATCAATGCCGATGCCATGTCCCAGACA
* * *
29184836 TGGTCTTACACTAGCTCTCGTCTCAAT-ACCG
66 TGGTCTTACACTAGCTCTCATATCAATGGCCG
* *
29184867 ATGCCATATCCTAGACATGGTCTTACACTAGCGCACATATCAATGCCGATGCCATGTCCCAGACA
1 ATGCCATATCCCAGACATGGTCTTACACTAGCACACATATCAATGCCGATGCCATGTCCCAGACA
* *
29184932 TGGTCTTA-ACTAGCTCTCATAT-AGTGGTCG
66 TGGTCTTACACTAGCTCTCATATCAATGGCCG
** * * * *
29184962 GCGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCAATGCCCATGCCATGTCCTAGACA
1 ATGCCATATCCCAGACATGGTCTTACACTAGCACACATATCAATGCCGATGCCATGTCCCAGACA
* *
29185027 TGGTCTTGCACTAGCTCTAATATC-ATGGCCG
66 TGGTCTTACACTAGCTCTCATATCAATGGCCG
*
29185058 ATGCCATATCCCAGACATGGTCTTACACTGGCACACATATCA
1 ATGCCATATCCCAGACATGGTCTTACACTAGCACACATATCA
29185100 CCCAAATGTC
Statistics
Matches: 199, Mismatches: 31, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
94 2 0.01
95 78 0.39
96 119 0.60
ACGTcount: A:0.26, C:0.29, G:0.19, T:0.27
Consensus pattern (97 bp):
ATGCCATATCCCAGACATGGTCTTACACTAGCACACATATCAATGCCGATGCCATGTCCCAGACA
TGGTCTTACACTAGCTCTCATATCAATGGCCG
Found at i:29185058 original size:143 final size:144
Alignment explanation
Indices: 29184771--29185086 Score: 415
Period size: 143 Copynumber: 2.2 Consensus size: 144
29184761 TGAATTGTCA
* * * * *
29184771 ATGCCATGTTCCAAACATGGTCTTACACTAGCTTACATGTTGAGGTCGATGCCATGTCCCAGACA
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTTACATATAGAGGTCGACGCCATGTCCCAGACA
* * * * *
29184836 TGGTCTTACACTAGCTCTCGTCTCAATACCGATGCCATATCCTAGACATGGTCTTACACTAGCGC
66 TGGTCTTACACTAGCACACATATCAATACCCATGCCATATCCTAGACATGGTCTTACACTAGCGC
29184901 ACATATCAATGCCG
131 ACATATCAATGCCG
* *
29184915 ATGCCATGTCCCAGACATGGTCTTA-ACTAGCTCT-CATATAGTGGTCGGCGCCATGTCCCAGAC
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCT-TACATATAGAGGTCGACGCCATGTCCCAGAC
* * * * *
29184978 ATGGTCTTACACTGGCACACATATCAATGCCCATGCCATGTCCTAGACATGGTCTTGCACTAGCT
65 ATGGTCTTACACTAGCACACATATCAATACCCATGCCATATCCTAGACATGGTCTTACACTAGCG
29185043 CTA-ATATC-ATGGCCG
130 C-ACATATCAAT-GCCG
*
29185058 ATGCCATATCCCAGACATGGTCTTACACT
1 ATGCCATGTCCCAGACATGGTCTTACACT
29185087 GGCACACATA
Statistics
Matches: 150, Mismatches: 18, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
142 2 0.01
143 120 0.80
144 28 0.19
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (144 bp):
ATGCCATGTCCCAGACATGGTCTTACACTAGCTTACATATAGAGGTCGACGCCATGTCCCAGACA
TGGTCTTACACTAGCACACATATCAATACCCATGCCATATCCTAGACATGGTCTTACACTAGCGC
ACATATCAATGCCG
Found at i:29185098 original size:48 final size:48
Alignment explanation
Indices: 29184771--29185099 Score: 351
Period size: 48 Copynumber: 6.9 Consensus size: 48
29184761 TGAATTGTCA
* * * * ** * *
29184771 ATGCCATGTTCCAAACATGGTCTTACACTAGCTTACATGTTGAGGTCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCAATGCCG
* * * *
29184819 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCGTCTCAATACCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCAATGCCG
* * *
29184867 ATGCCATATCCTAGACATGGTCTTACACTAGCGCACATATCAATGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCAATGCCG
* * *
29184915 ATGCCATGTCCCAGACATGGTCTTA-ACTAGCTCTCATAT-AGTGGTCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCAAT-GCCG
** * * *
29184962 GCGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCAATGCCC
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCAATGCCG
* *
29185010 ATGCCATGTCCTAGACATGGTCTTGCACTAGCTCTA-ATATC-ATGGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTC-ACATATCAAT-GCCG
* * *
29185058 ATGCCATATCCCAGACATGGTCTTACACTGGCACACATATCA
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCA
29185100 CCCAAATGTC
Statistics
Matches: 230, Mismatches: 44, Indels: 13
0.80 0.15 0.05
Matches are distributed among these distances:
46 2 0.01
47 41 0.18
48 184 0.80
49 3 0.01
ACGTcount: A:0.26, C:0.29, G:0.19, T:0.27
Consensus pattern (48 bp):
ATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCAATGCCG
Found at i:29186414 original size:48 final size:47
Alignment explanation
Indices: 29186303--29186618 Score: 371
Period size: 48 Copynumber: 6.6 Consensus size: 47
29186293 TATTACACCA
* * ** * * *
29186303 TGTAAGACTATGTCTGGGACATGGTATCGACATCTGAGATGTGTGCCTA
1 TGTAAGACCATGTCTGGGACATGGCATCGTGA--TGATATATGTGCCTG
* *
29186352 TGTAAGACCATGTCTGGGACATGGCATCAGTGATGCTATATGTGTCTG
1 TGTAAGACCATGTCTGGGACATGGCATC-GTGATGATATATGTGCCTG
* *
29186400 TGTAAGACCATGTCTGGGACATGGCATCGACGACGATATATGTGCCTG
1 TGTAAGACCATGTCTGGGACATGGCATCG-TGATGATATATGTGCCTG
* * *
29186448 TGTAAGACCATGTCTAGGACATGGCATCGGCGATGATATATTTGCCTG
1 TGTAAGACCATGTCTGGGACATGGCATC-GTGATGATATATGTGCCTG
* *
29186496 TGTAAGACCAAGTCTAGGACATGGCATCGGTGATGATATATGTGCCTG
1 TGTAAGACCATGTCTGGGACATGGCATC-GTGATGATATATGTGCCTG
* * * * *
29186544 TGTAAGATCATGTCTGGGACATGGCATCATCGGTGATATGTGTGCCAG
1 TGTAAGACCATGTCTGGGACATGGCATCGT-GATGATATATGTGCCTG
*
29186592 TGTAAGACCATGTCAGGGACATGGCAT
1 TGTAAGACCATGTCTGGGACATGGCAT
29186619 TGGTACTTTA
Statistics
Matches: 235, Mismatches: 28, Indels: 9
0.86 0.10 0.03
Matches are distributed among these distances:
47 2 0.01
48 204 0.87
49 27 0.11
50 2 0.01
ACGTcount: A:0.25, C:0.18, G:0.29, T:0.28
Consensus pattern (47 bp):
TGTAAGACCATGTCTGGGACATGGCATCGTGATGATATATGTGCCTG
Found at i:29186564 original size:144 final size:144
Alignment explanation
Indices: 29186346--29186618 Score: 415
Period size: 144 Copynumber: 1.9 Consensus size: 144
29186336 CTGAGATGTG
* * * *
29186346 TGCCTATGTAAGACCATGTCTGGGACATGGCATCAGTGATGCTATATGTGTCTGTGTAAGACCAT
1 TGCCTATGTAAGACCAAGTCTAGGACATGGCATCAGTGATGATATATGTGCCTGTGTAAGACCAT
*
29186411 GTCTGGGACATGGCATCGA-CGACGATATATGTGCCTGTGTAAGACCATGTCTA-GGACATGGCA
66 GTCTGGGACATGGCATC-ATCGACGATATATGTGCCAGTGTAAGACCATGTC-AGGGACATGGCA
29186474 TCGGCGATGATATATT
129 TCGGCGATGATATATT
* * *
29186490 TGCCTGTGTAAGACCAAGTCTAGGACATGGCATCGGTGATGATATATGTGCCTGTGTAAGATCAT
1 TGCCTATGTAAGACCAAGTCTAGGACATGGCATCAGTGATGATATATGTGCCTGTGTAAGACCAT
** *
29186555 GTCTGGGACATGGCATCATCGGTGATATGTGTGCCAGTGTAAGACCATGTCAGGGACATGGCAT
66 GTCTGGGACATGGCATCATCGACGATATATGTGCCAGTGTAAGACCATGTCAGGGACATGGCAT
29186619 TGGTACTTTA
Statistics
Matches: 116, Mismatches: 11, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
143 2 0.02
144 114 0.98
ACGTcount: A:0.25, C:0.18, G:0.29, T:0.28
Consensus pattern (144 bp):
TGCCTATGTAAGACCAAGTCTAGGACATGGCATCAGTGATGATATATGTGCCTGTGTAAGACCAT
GTCTGGGACATGGCATCATCGACGATATATGTGCCAGTGTAAGACCATGTCAGGGACATGGCATC
GGCGATGATATATT
Found at i:29189753 original size:38 final size:40
Alignment explanation
Indices: 29189702--29189810 Score: 143
Period size: 38 Copynumber: 2.8 Consensus size: 40
29189692 CTGGAAATTA
* *
29189702 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAG-T-GGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTTAGGC
**
29189740 TATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTTAGGC
*
29189780 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
29189811 ACGTGATTAT
Statistics
Matches: 62, Mismatches: 5, Indels: 6
0.85 0.07 0.08
Matches are distributed among these distances:
37 3 0.05
38 28 0.45
39 1 0.02
40 28 0.45
41 2 0.03
ACGTcount: A:0.23, C:0.24, G:0.29, T:0.24
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTTAGGC
Found at i:29189824 original size:40 final size:40
Alignment explanation
Indices: 29189662--29189826 Score: 162
Period size: 40 Copynumber: 4.2 Consensus size: 40
29189652 AAATTGAATG
* * **
29189662 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTG-GAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGTGATT
* * *
29189701 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTG--G
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGATT
* *
29189739 CTATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTGATT
* *
29189779 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGA-GTGATT
29189819 ATATCCGG
1 ATATCCGG
29189827 TTATATTCCG
Statistics
Matches: 104, Mismatches: 15, Indels: 13
0.79 0.11 0.10
Matches are distributed among these distances:
37 3 0.03
38 29 0.28
39 14 0.13
40 56 0.54
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGATT
Found at i:29196249 original size:78 final size:76
Alignment explanation
Indices: 29196119--29196267 Score: 264
Period size: 78 Copynumber: 1.9 Consensus size: 76
29196109 TTAGTGTTAT
29196119 AAAGGTGAATTCCACTAGAAAGGACTTAGTAGTGAACTTTGAAAGTACGATAGGGAAATGATGTG
1 AAAGGTGAATTCCACTAGAAAGGACTTAGTAGTGAACTTTGAAAGTACGATAGGG-AA--ATGTG
29196184 ATGACTAATGATTG
63 ATGACTAATGATTG
29196198 AAAGGTGAATT-CACTAGAAAGGACTTAGTAGTGAACTTTGAAAGTACGATAGGGAAATGTGATG
1 AAAGGTGAATTCCACTAGAAAGGACTTAGTAGTGAACTTTGAAAGTACGATAGGGAAATGTGATG
29196262 ACTAAT
66 ACTAAT
29196268 TAAAGCATGC
Statistics
Matches: 70, Mismatches: 0, Indels: 4
0.95 0.00 0.05
Matches are distributed among these distances:
75 14 0.20
77 2 0.03
78 43 0.61
79 11 0.16
ACGTcount: A:0.39, C:0.09, G:0.26, T:0.26
Consensus pattern (76 bp):
AAAGGTGAATTCCACTAGAAAGGACTTAGTAGTGAACTTTGAAAGTACGATAGGGAAATGTGATG
ACTAATGATTG
Found at i:29197830 original size:39 final size:40
Alignment explanation
Indices: 29197777--29197886 Score: 136
Period size: 39 Copynumber: 2.8 Consensus size: 40
29197767 CTGGAAATTA
* *
29197777 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAG-T-GGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTTAGGC
**
29197815 TATTCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATTC
1 TA-TCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTTAGGC
*
29197856 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
29197887 ACGTGATTAT
Statistics
Matches: 62, Mismatches: 5, Indels: 8
0.83 0.07 0.11
Matches are distributed among these distances:
38 5 0.08
39 26 0.42
40 26 0.42
41 5 0.08
ACGTcount: A:0.23, C:0.24, G:0.29, T:0.25
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTTAGGC
Found at i:29197900 original size:40 final size:40
Alignment explanation
Indices: 29197736--29197902 Score: 171
Period size: 40 Copynumber: 4.2 Consensus size: 40
29197726 AAATTGAATG
* * * **
29197736 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-GAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGTGATT
* * **
29197776 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGATT
*
29197816 AT-TCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTGATT
* *
29197855 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGA-GTGATT
29197895 ATATCCGG
1 ATATCCGG
29197903 TTATATTCCG
Statistics
Matches: 104, Mismatches: 18, Indels: 10
0.79 0.14 0.08
Matches are distributed among these distances:
38 3 0.03
39 30 0.29
40 69 0.66
41 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGATT
Found at i:29201715 original size:17 final size:17
Alignment explanation
Indices: 29201675--29201717 Score: 52
Period size: 17 Copynumber: 2.5 Consensus size: 17
29201665 ACAATGGAAT
29201675 TTTAAATAAAAATGAAA
1 TTTAAATAAAAATGAAA
**
29201692 TAAAAATAAAAAT-AATA
1 TTTAAATAAAAATGAA-A
29201709 TTTAAATAA
1 TTTAAATAA
29201718 GCACGCTCGT
Statistics
Matches: 21, Mismatches: 4, Indels: 2
0.78 0.15 0.07
Matches are distributed among these distances:
16 2 0.10
17 19 0.90
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.30
Consensus pattern (17 bp):
TTTAAATAAAAATGAAA
Found at i:29208896 original size:43 final size:42
Alignment explanation
Indices: 29208755--29208897 Score: 114
Period size: 43 Copynumber: 3.3 Consensus size: 42
29208745 AAACCACGTC
* *
29208755 TGGGACGTTGGCATCGAT-TTGAGATTTACATGTAAGACCAT-GTT
1 TGGGACGTTGGCATC-ATATT-TGA-TTACATGTAAGACC-TCATT
* * * * * *
29208799 TGGGACATTGGCATCGTATATGATTTCGTGTAAGA-CTCTATC
1 TGGGACGTTGGCATCATATTTGATTACATGTAAGACCTC-ATT
29208841 TGGGACAG-TGGCATCAATATTTGATTACATGTAAGACCTCATT
1 TGGGAC-GTTGGCATC-ATATTTGATTACATGTAAGACCTCATT
*
29208884 TAGGACGTTGGCAT
1 TGGGACGTTGGCAT
29208898 TTTATGAGCT
Statistics
Matches: 77, Mismatches: 15, Indels: 15
0.72 0.14 0.14
Matches are distributed among these distances:
40 1 0.01
41 1 0.01
42 25 0.32
43 32 0.42
44 18 0.23
ACGTcount: A:0.26, C:0.15, G:0.25, T:0.34
Consensus pattern (42 bp):
TGGGACGTTGGCATCATATTTGATTACATGTAAGACCTCATT
Found at i:29216299 original size:49 final size:50
Alignment explanation
Indices: 29216126--29216309 Score: 217
Period size: 50 Copynumber: 3.7 Consensus size: 50
29216116 ATCTATTGTG
* * * *
29216126 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-TT
* * * * * **
29216177 CGATCACGTGTGTAGTACTAAGTACAGGCTACTACGTGTATCAGATGGTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* *
29216227 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTGCGTGTACCGGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
**
29216277 -GGTCGTATGTGTAGTACTAAGTGCAGGCTACTA
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTA
29216310 TACATACTAG
Statistics
Matches: 112, Mismatches: 21, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
49 30 0.27
50 43 0.38
51 39 0.35
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.29
Consensus pattern (50 bp):
AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
Found at i:29219775 original size:29 final size:29
Alignment explanation
Indices: 29219735--29219834 Score: 112
Period size: 29 Copynumber: 3.5 Consensus size: 29
29219725 AATGTGACTA
* *
29219735 GGCCTAACGGGCCATATAAATGTGATTTT
1 GGCCTAATGGGCCATATAAATGTGATTTG
* * *
29219764 TGCCTAATGGGCCATATACAGGTGATTTG
1 GGCCTAATGGGCCATATAAATGTGATTTG
* * *
29219793 GGCCTAATGGGCCATATGAATATGA-TCG
1 GGCCTAATGGGCCATATAAATGTGATTTG
*
29219821 GGCTTAATGGGCCA
1 GGCCTAATGGGCCA
29219835 AATACGGTAT
Statistics
Matches: 59, Mismatches: 12, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
28 15 0.25
29 44 0.75
ACGTcount: A:0.26, C:0.18, G:0.28, T:0.28
Consensus pattern (29 bp):
GGCCTAATGGGCCATATAAATGTGATTTG
Found at i:29231375 original size:50 final size:50
Alignment explanation
Indices: 29231313--29231409 Score: 194
Period size: 50 Copynumber: 1.9 Consensus size: 50
29231303 CCTTTGTATA
29231313 TAACCAATCCCAACTTGAATAGCTGCATTAATCACTTTGTAACAGCCATG
1 TAACCAATCCCAACTTGAATAGCTGCATTAATCACTTTGTAACAGCCATG
29231363 TAACCAATCCCAACTTGAATAGCTGCATTAATCACTTTGTAACAGCC
1 TAACCAATCCCAACTTGAATAGCTGCATTAATCACTTTGTAACAGCC
29231410 CTTCTACATA
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
50 47 1.00
ACGTcount: A:0.34, C:0.27, G:0.11, T:0.28
Consensus pattern (50 bp):
TAACCAATCCCAACTTGAATAGCTGCATTAATCACTTTGTAACAGCCATG
Found at i:29231592 original size:19 final size:19
Alignment explanation
Indices: 29231565--29231603 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
29231555 TTATTCTGGC
*
29231565 AACTTAATTAACTAAGATG
1 AACTCAATTAACTAAGATG
29231584 AACTCAATTAACTAAGATG
1 AACTCAATTAACTAAGATG
29231603 A
1 A
29231604 GTAATTTACT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.49, C:0.13, G:0.10, T:0.28
Consensus pattern (19 bp):
AACTCAATTAACTAAGATG
Found at i:29235615 original size:40 final size:40
Alignment explanation
Indices: 29235555--29235738 Score: 230
Period size: 40 Copynumber: 4.6 Consensus size: 40
29235545 TATTCGAATG
* *
29235555 ATATCCAGGCTAAG-TCCCGAAGGCTTTTATGCTAGTGACT
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTATGCTAGTGACT
* * *
29235595 ATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAG-TGACT
* * *
29235635 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAGTGACT
*
29235675 ATATCCGGGCTAAG-TCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTATGCTAGTGACT
*
29235715 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGATCCGAAGGC
29235739 CTTGTGCGAG
Statistics
Matches: 125, Mismatches: 14, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
39 1 0.01
40 121 0.97
41 3 0.02
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAGTGACT
Found at i:29235688 original size:80 final size:80
Alignment explanation
Indices: 29235555--29235738 Score: 255
Period size: 80 Copynumber: 2.3 Consensus size: 80
29235545 TATTCGAATG
* * * *
29235555 ATATCCAGGCTAAGTCCCGAAGGCTTTTATGCTAGTGACTATATCCGGACTAAGAT-CCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGCGACTATATCCGGACTAAG-TCCCGAAGGC
* *
29235619 ATTTGTGCGAGTTG-CT
65 ATTTATGCGAG-TGACC
* *
29235635 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACTATATCCGGGCTAAGTCCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGCGACTATATCCGGACTAAGTCCCGAAGGCA
*
29235700 TTTATGCTAGTGACC
66 TTTATGCGAGTGACC
29235715 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
29235739 CTTGTGCGAG
Statistics
Matches: 93, Mismatches: 9, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
79 3 0.03
80 90 0.97
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGCGACTATATCCGGACTAAGTCCCGAAGGCA
TTTATGCGAGTGACC
Found at i:29236043 original size:22 final size:22
Alignment explanation
Indices: 29236001--29236044 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
29235991 AAAATGTGCA
* *
29236001 TATATGAAGTTATTCATTTAGC
1 TATATGAAGTTATACACTTAGC
29236023 TATATGAATGTTATAC-CTTAGC
1 TATATGAA-GTTATACACTTAGC
29236045 CGAAACTAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 13 0.68
23 6 0.32
ACGTcount: A:0.32, C:0.11, G:0.14, T:0.43
Consensus pattern (22 bp):
TATATGAAGTTATACACTTAGC
Found at i:29238605 original size:42 final size:43
Alignment explanation
Indices: 29238501--29238657 Score: 142
Period size: 43 Copynumber: 3.7 Consensus size: 43
29238491 TGTGTTTTCA
* * * *
29238501 TGTAAGACCACGTTTGGAACGTTGGCATC-A-ACTTATGATTTATG
1 TGTAAGACCACGTCTGGGACATTGGCATCGATA-TT-TGA-TTACG
* *
29238545 TGTAAGACCACGTTTGGGACATTGGCATCG-TATTTGATTTCG
1 TGTAAGACCACGTCTGGGACATTGGCATCGATATTTGATTACG
* * * *
29238587 TGTAAGACC-CTGTCTGGGATAGTGGCATTGATATTTGATTACA
1 TGTAAGACCAC-GTCTGGGACATTGGCATCGATATTTGATTACG
* *
29238630 TGTAAGACCACGTCTGAGACGTTGGCAT
1 TGTAAGACCACGTCTGGGACATTGGCAT
29238658 TGTACGAGCT
Statistics
Matches: 94, Mismatches: 14, Indels: 11
0.79 0.12 0.09
Matches are distributed among these distances:
41 1 0.01
42 27 0.29
43 35 0.37
44 30 0.32
45 1 0.01
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (43 bp):
TGTAAGACCACGTCTGGGACATTGGCATCGATATTTGATTACG
Found at i:29238622 original size:43 final size:42
Alignment explanation
Indices: 29238501--29238645 Score: 125
Period size: 44 Copynumber: 3.4 Consensus size: 42
29238491 TGTGTTTTCA
* * * *
29238501 TGTAAGACCACGTTTGGAAC-GTTGGCATC-AACTTATGATTTATG
1 TGTAAGACCACGTCTGGGACAG-TGGCATCGTA-TT-TGA-TTACG
* * *
29238545 TGTAAGACCACGTTTGGGACATTGGCATCGTATTTGATTTCG
1 TGTAAGACCACGTCTGGGACAGTGGCATCGTATTTGATTACG
* * *
29238587 TGTAAGACC-CTGTCTGGGATAGTGGCATTGATATTTGATTACA
1 TGTAAGACCAC-GTCTGGGACAGTGGCATCG-TATTTGATTACG
29238630 TGTAAGACCACGTCTG
1 TGTAAGACCACGTCTG
29238646 AGACGTTGGC
Statistics
Matches: 85, Mismatches: 11, Indels: 11
0.79 0.10 0.10
Matches are distributed among these distances:
41 1 0.01
42 27 0.32
43 27 0.32
44 29 0.34
45 1 0.01
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.34
Consensus pattern (42 bp):
TGTAAGACCACGTCTGGGACAGTGGCATCGTATTTGATTACG
Found at i:29244225 original size:11 final size:10
Alignment explanation
Indices: 29244193--29244247 Score: 51
Period size: 11 Copynumber: 5.5 Consensus size: 10
29244183 CATGATATTT
29244193 TGATAT-ACA
1 TGATATGACA
*
29244202 TGATTTGACA
1 TGATATGACA
29244212 TGATATGCACA
1 TGATATG-ACA
*
29244223 TGATATG-TA
1 TGATATGACA
*
29244232 TGATAAGCACA
1 TGATATG-ACA
29244243 TGATA
1 TGATA
29244248 AATTCATATA
Statistics
Matches: 37, Mismatches: 5, Indels: 6
0.77 0.10 0.12
Matches are distributed among these distances:
9 12 0.32
10 9 0.24
11 16 0.43
ACGTcount: A:0.38, C:0.11, G:0.18, T:0.33
Consensus pattern (10 bp):
TGATATGACA
Found at i:29244329 original size:25 final size:24
Alignment explanation
Indices: 29244294--29244364 Score: 106
Period size: 25 Copynumber: 2.9 Consensus size: 24
29244284 GGAGGAAGTG
*
29244294 CAAAAGGGCTTTGCCCGAGTTTAC
1 CAAAAGGGCTTTGCCCCAGTTTAC
*
29244318 CGAAAAGGGCTTTGCCCCAGTTTAT
1 C-AAAAGGGCTTTGCCCCAGTTTAC
29244343 CAGAAAGGGCTTTGCCCCAGTT
1 CA-AAAGGGCTTTGCCCCAGTT
29244365 ATTAAAAGAG
Statistics
Matches: 43, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
24 2 0.05
25 41 0.95
ACGTcount: A:0.24, C:0.25, G:0.25, T:0.25
Consensus pattern (24 bp):
CAAAAGGGCTTTGCCCCAGTTTAC
Found at i:29244377 original size:24 final size:23
Alignment explanation
Indices: 29244294--29244391 Score: 97
Period size: 25 Copynumber: 4.0 Consensus size: 23
29244284 GGAGGAAGTG
* *
29244294 CAAAAGGGCTTTGCCCGAGTTTAC
1 CAAAAGGGCTTTGCCCCAG-TTAT
29244318 CGAAAAGGGCTTTGCCCCAGTTTAT
1 C-AAAAGGGCTTTGCCCCAG-TTAT
29244343 CAGAAAGGGCTTTGCCCCAGTTAT
1 CA-AAAGGGCTTTGCCCCAGTTAT
* **
29244367 TAAAAGAGGCTAGGCCTCCAGTTAT
1 CAAAAG-GGCTTTGCC-CCAGTTAT
29244392 ATGATAAAGC
Statistics
Matches: 65, Mismatches: 5, Indels: 7
0.84 0.06 0.09
Matches are distributed among these distances:
23 4 0.06
24 14 0.22
25 47 0.72
ACGTcount: A:0.27, C:0.23, G:0.24, T:0.26
Consensus pattern (23 bp):
CAAAAGGGCTTTGCCCCAGTTAT
Found at i:29246985 original size:40 final size:41
Alignment explanation
Indices: 29246941--29247165 Score: 261
Period size: 40 Copynumber: 5.7 Consensus size: 41
29246931 GCTACTCGTT
* * *
29246941 CAAATACCTTCGGGA-CATAGCCCGG-TTATAGTAGCTCGCA
1 CAAATGCCTTCGGGATCTTAGCCCGGATT-TAGTAACTCGCA
*
29246981 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGATCTTAGCCCGGATTTAGTAACTCGCA
* *
29247021 CAAATGCCTTC-GGATCTTAGTCCAGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGATCTTAGCCCGGATTTAGTAACTCGCA
* *
29247061 CAAATGCCTTC-GGATCTTAGTCTGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGATCTTAGCCCGGATTTAGTAACTCGCA
* * * *
29247101 CAAATGCCTTC-GGATCTTAG-TCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGATCTTAGCCCGGATTTAGTAAC-TCGCA
29247141 CAAA-GCCTTCGGGA-CTTAGCCCGGA
1 CAAATGCCTTCGGGATCTTAGCCCGGA
29247166 CATCATTCGA
Statistics
Matches: 165, Mismatches: 15, Indels: 10
0.87 0.08 0.05
Matches are distributed among these distances:
39 24 0.15
40 139 0.84
41 2 0.01
ACGTcount: A:0.27, C:0.26, G:0.21, T:0.27
Consensus pattern (41 bp):
CAAATGCCTTCGGGATCTTAGCCCGGATTTAGTAACTCGCA
Found at i:29255050 original size:40 final size:39
Alignment explanation
Indices: 29255006--29255223 Score: 211
Period size: 38 Copynumber: 5.5 Consensus size: 39
29254996 CGTCAAAGTA
*
29255006 CCTTCGGGATTTAGCCCGGTATAGTAGACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGG-ATAGTAGACTCGCACAAATG
*
29255046 CCTTCGGG-CTTA-CCCGGATTAGTACACT-GCACAAATG
1 CCTTCGGGACTTAGCCCGGA-TAGTAGACTCGCACAAATG
*
29255083 CCTTCGGGACTTAGTACTC-GAT-GTTAGAACTCCGCACAAATG
1 CCTTCGGGACTTAG--CCCGGATAG-TAG-ACT-CGCACAAATG
* *
29255125 CCTTC-GGATCTTCGCCCGGATTTAGTA-ACTAGCAACAAATG
1 CCTTCGGGA-CTTAGCCCGGA--TAGTAGACTCGC-ACAAATG
*
29255166 CCTTC-GGACTTAGCCCGGATA-TAGTACTCGTACAAATG
1 CCTTCGGGACTTAGCCCGGATAGTAG-ACTCGCACAAATG
29255204 CCTTCGGGACTTAGCCCGGA
1 CCTTCGGGACTTAGCCCGGA
29255224 CTATCATCGA
Statistics
Matches: 150, Mismatches: 10, Indels: 37
0.76 0.05 0.19
Matches are distributed among these distances:
37 20 0.13
38 32 0.21
39 24 0.16
40 27 0.18
41 25 0.17
42 18 0.12
43 3 0.02
44 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (39 bp):
CCTTCGGGACTTAGCCCGGATAGTAGACTCGCACAAATG
Found at i:29255201 original size:79 final size:76
Alignment explanation
Indices: 29255006--29255223 Score: 228
Period size: 79 Copynumber: 2.8 Consensus size: 76
29254996 CGTCAAAGTA
* * *
29255006 CCTTCGGGATTTAGCCCGG-TATAGTAGACTCGCACAAATGCCTTCGGGCTTACCCGGATTAGTA
1 CCTTCGGGACTTAGCCCGGATATAGT--ACTCGCACAAATGCCTTCGGACTTGCCCGGATTAGTA
29255070 CACTGCACAAATG
64 CACTGCACAAATG
* * *
29255083 CCTTCGGGACTTAGTACTC-GATGTTAGAACTCCGCACAAATGCCTTCGGATCTTCGCCCGGATT
1 CCTTCGGGACTTAG--CCCGGAT-ATAGTACT-CGCACAAATGCCTTCGGA-CTT-GCCCGGA-T
29255147 TAGTA-ACTAGCAACAAATG
59 TAGTACACT-GC-ACAAATG
*
29255166 CCTTC-GGACTTAGCCCGGATATAGTACTCGTACAAATGCCTTCGGGACTTAGCCCGGA
1 CCTTCGGGACTTAGCCCGGATATAGTACTCGCACAAATGCCTTC-GGACTT-GCCCGGA
29255224 CTATCATCGA
Statistics
Matches: 118, Mismatches: 11, Indels: 22
0.78 0.07 0.15
Matches are distributed among these distances:
77 13 0.11
78 4 0.03
79 44 0.37
80 17 0.14
81 12 0.10
82 16 0.14
83 12 0.10
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (76 bp):
CCTTCGGGACTTAGCCCGGATATAGTACTCGCACAAATGCCTTCGGACTTGCCCGGATTAGTACA
CTGCACAAATG
Found at i:29257906 original size:29 final size:28
Alignment explanation
Indices: 29257874--29257976 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
29257864 GGGACGAGAT
* *
29257874 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTG-AATATA
* *
29257903 TGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTT-GAATATA
* * *
29257932 TGGCACTATGTGTGCGGGCTTGAATCACA
1 TGGCACTAAGTGTGCGAGCTTGAAT-ATA
29257961 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
29257977 TGATTGAGTA
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 3 0.05
29 58 0.94
30 1 0.02
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (28 bp):
TGGCACTAAGTGTGCGAGCTTGAATATA
Found at i:29265932 original size:29 final size:28
Alignment explanation
Indices: 29265900--29266002 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
29265890 GGGACGAGAT
* *
29265900 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTG-AATATA
* *
29265929 TGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTT-GAATATA
* * *
29265958 TGGCACTATGTGTGCGGGCTTGAATCACA
1 TGGCACTAAGTGTGCGAGCTTGAAT-ATA
29265987 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
29266003 TGATTGAGTA
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 3 0.05
29 58 0.94
30 1 0.02
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (28 bp):
TGGCACTAAGTGTGCGAGCTTGAATATA
Found at i:29273965 original size:29 final size:28
Alignment explanation
Indices: 29273932--29274034 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
29273922 GGGACGAGAT
* *
29273932 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTG-AATATA
* *
29273961 TGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTT-GAATATA
* * *
29273990 TGGCACTATGTGTGCGGGCTTGAATCACA
1 TGGCACTAAGTGTGCGAGCTTGAAT-ATA
29274019 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
29274035 TGATTGAGTA
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 3 0.05
29 58 0.94
30 1 0.02
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (28 bp):
TGGCACTAAGTGTGCGAGCTTGAATATA
Found at i:29276497 original size:27 final size:26
Alignment explanation
Indices: 29276449--29276508 Score: 66
Period size: 27 Copynumber: 2.3 Consensus size: 26
29276439 ATGAGGCTGC
*
29276449 CAGATATTGTGACAAAGTCACCAGATA
1 CAGATATTGTGACAAAGCCACCAGA-A
* * *
29276476 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACAAAGCCACCAGAA
*
29276502 CAAATAT
1 CAGATAT
29276509 ATATATATAT
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 7 0.25
27 21 0.75
ACGTcount: A:0.38, C:0.20, G:0.20, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACAAAGCCACCAGAA
Found at i:29277296 original size:27 final size:26
Alignment explanation
Indices: 29277240--29277410 Score: 175
Period size: 27 Copynumber: 6.4 Consensus size: 26
29277230 AGGCAAAATG
* *
29277240 GTAATTTTAGCCC-ACAA-GGTATCTC
1 GTAATTCTA-CCCTACAAGGGTATTTC
29277265 GGTAATTCTACCCTACAAGGGTATTTC
1 -GTAATTCTACCCTACAAGGGTATTTC
* * *
29277292 AGTAATTCTATCCTACAGGGGTAGTTC
1 -GTAATTCTACCCTACAAGGGTATTTC
* *
29277319 GATAATTCTACCCTATAGGGGTATTTC
1 G-TAATTCTACCCTACAAGGGTATTTC
* *
29277346 AATAATTCTACCCTACAGGGGTATTTC
1 -GTAATTCTACCCTACAAGGGTATTTC
*
29277373 GGTAATTCTACCTTACAAGGGTATTTC
1 -GTAATTCTACCCTACAAGGGTATTTC
29277400 GATAATTCTAC
1 G-TAATTCTAC
29277411 AGCTTATCCA
Statistics
Matches: 125, Mismatches: 15, Indels: 9
0.84 0.10 0.06
Matches are distributed among these distances:
25 3 0.02
26 14 0.11
27 108 0.86
ACGTcount: A:0.27, C:0.20, G:0.18, T:0.35
Consensus pattern (26 bp):
GTAATTCTACCCTACAAGGGTATTTC
Found at i:29277326 original size:54 final size:54
Alignment explanation
Indices: 29277267--29277410 Score: 209
Period size: 54 Copynumber: 2.7 Consensus size: 54
29277257 GGTATCTCGG
*
29277267 TAATTCTACCCTACAAGGGTATTTCAGTAATTCTATCCTACAGGGGTAGTTCGA
1 TAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTAGTTCGA
* * * * *
29277321 TAATTCTACCCTATAGGGGTATTTCAATAATTCTACCCTACAGGGGTATTTCGG
1 TAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTAGTTCGA
*
29277375 TAATTCTACCTTACAAGGGTATTTC-GATAATTCTAC
1 TAATTCTACCCTACAAGGGTATTTCAG-TAATTCTAC
29277411 AGCTTATCCA
Statistics
Matches: 79, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
54 79 1.00
ACGTcount: A:0.28, C:0.20, G:0.17, T:0.35
Consensus pattern (54 bp):
TAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTAGTTCGA
Found at i:29282232 original size:37 final size:36
Alignment explanation
Indices: 29282182--29282268 Score: 129
Period size: 37 Copynumber: 2.3 Consensus size: 36
29282172 TACGAAGTCT
* *
29282182 TACCCGAACATAATCTCCACACGTATTCATCGGGTC
1 TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
29282218 GTACCCGGACATAATCTCCACACGTAGTCATCGGGTC
1 -TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
29282255 TCACCCGGAACATA
1 T-ACCCGG-ACATA
29282269 TTTCCAAGTT
Statistics
Matches: 46, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
36 1 0.02
37 40 0.87
38 5 0.11
ACGTcount: A:0.28, C:0.33, G:0.17, T:0.22
Consensus pattern (36 bp):
TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
Found at i:29282404 original size:49 final size:49
Alignment explanation
Indices: 29282337--29282685 Score: 617
Period size: 49 Copynumber: 7.1 Consensus size: 49
29282327 TTTACCACAT
* *
29282337 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
29282386 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
* * *
29282435 ATATACATACACTTTCACATTCATCACATCGGCCATTTGGCCTTATCAC
1 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
29282484 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
*
29282533 ATATATATACATTTTCACATTCATCACCTCGGCCATTAGGCCTTATCAC
1 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
* * *
29282582 ATATATATACACTTTCACATTCATCACGTCGGCCCTTAGGCCTTATCAC
1 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
29282631 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
29282680 ATATAT
1 ATATAT
29282686 TATTATGTAC
Statistics
Matches: 285, Mismatches: 15, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
49 285 1.00
ACGTcount: A:0.30, C:0.28, G:0.09, T:0.34
Consensus pattern (49 bp):
ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
Found at i:29285010 original size:22 final size:24
Alignment explanation
Indices: 29284965--29285016 Score: 63
Period size: 22 Copynumber: 2.2 Consensus size: 24
29284955 TACCATTAGC
29284965 AACCAATCTCATGTTCATAACATA
1 AACCAATCTCATGTTCATAACATA
* **
29284989 TACCAAT-TCATG-TCATTCCATA
1 AACCAATCTCATGTTCATAACATA
29285011 AACCAA
1 AACCAA
29285017 AAACATACCA
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
22 13 0.54
23 5 0.21
24 6 0.25
ACGTcount: A:0.40, C:0.27, G:0.04, T:0.29
Consensus pattern (24 bp):
AACCAATCTCATGTTCATAACATA
Found at i:29288620 original size:40 final size:40
Alignment explanation
Indices: 29288561--29288729 Score: 173
Period size: 40 Copynumber: 4.2 Consensus size: 40
29288551 CGGGACTTTA
* * *
29288561 CCCGGATATCACGATTTGCACAAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* *
29288601 CCCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * * * *
29288641 CCCGGATATAGCTACTAGCACAATTGCCTTCGGGTCTTAA
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * *
29288681 CCCGGATAT-A-AA-TTTCAGCATAATTGTCTTCGGGGCTTAG
1 CCCGGATATAACAACTTGCA-CA-AA-TGCCTTCGGGTCTTAG
29288721 CCCGGATAT
1 CCCGGATAT
29288730 CATTCAATTT
Statistics
Matches: 106, Mismatches: 20, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
37 3 0.03
38 3 0.03
39 1 0.01
40 99 0.93
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (40 bp):
CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
Found at i:29295909 original size:40 final size:40
Alignment explanation
Indices: 29295850--29296018 Score: 173
Period size: 40 Copynumber: 4.2 Consensus size: 40
29295840 CGGGACTTTA
* * *
29295850 CCCGGATATCACGATTTGCACAAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* *
29295890 CCCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * * * *
29295930 CCCGGATATAGCTACTAGCACAATTGCCTTCGGGTCTTAA
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * *
29295970 CCCGGATAT-A-AA-TTTCAGCATAATTGTCTTCGGGGCTTAG
1 CCCGGATATAACAACTTGCA-CA-AA-TGCCTTCGGGTCTTAG
29296010 CCCGGATAT
1 CCCGGATAT
29296019 CATTCAATTT
Statistics
Matches: 106, Mismatches: 20, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
37 3 0.03
38 3 0.03
39 1 0.01
40 99 0.93
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (40 bp):
CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
Found at i:29301205 original size:46 final size:44
Alignment explanation
Indices: 29301062--29301205 Score: 114
Period size: 46 Copynumber: 3.1 Consensus size: 44
29301052 CCCGCCCATA
* *
29301062 AGTGAACTCGAACTCAACTCAACGAGCTCGGATGCCTAGTTA-CATCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A---ACCATCT
* * * * *
29301109 CA-CGAACTCGGACTCAACTCAATGAGTTCGGACATTCGCATCCAT-A
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGC-CAACCATCT
29301155 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CAACCAT-CT
29301201 AGTGA
1 AGTGA
29301206 CATGTCACTT
Statistics
Matches: 76, Mismatches: 13, Indels: 16
0.72 0.12 0.15
Matches are distributed among these distances:
44 9 0.12
45 1 0.01
46 32 0.42
47 28 0.37
48 1 0.01
49 4 0.05
50 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.22
Consensus pattern (44 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCAACCATCT
Found at i:29306101 original size:44 final size:42
Alignment explanation
Indices: 29305960--29306124 Score: 156
Period size: 43 Copynumber: 3.9 Consensus size: 42
29305950 AGCTCCTACA
* * * * **
29305960 ATGCCAACGTCCCAGACATGGTCTTATATGTAATCGAATATTA
1 ATGCCAACGTCCCAGACATGGTCTTACACGAAATCAAATA-CG
*
29306003 ATGCC-ACTGTCCCAGACAGGGTCTTACACGAAATCAAATACG
1 ATGCCAAC-GTCCCAGACATGGTCTTACACGAAATCAAATACG
* *
29306045 ATGCCGATGTCCCTA-ACATGGTCTTACACGTAAATCATAAGT-CG
1 ATGCCAACGTCCC-AGACATGGTCTTACACG-AAATCA-AA-TACG
* *
29306089 ATGCCAACGTCCCAGACGTGGTCTTACATGAAATCA
1 ATGCCAACGTCCCAGACATGGTCTTACACGAAATCA
29306125 CATATCGAAT
Statistics
Matches: 102, Mismatches: 13, Indels: 14
0.79 0.10 0.11
Matches are distributed among these distances:
42 26 0.25
43 47 0.46
44 28 0.27
45 1 0.01
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.25
Consensus pattern (42 bp):
ATGCCAACGTCCCAGACATGGTCTTACACGAAATCAAATACG
Found at i:29307730 original size:24 final size:24
Alignment explanation
Indices: 29307701--29307748 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
29307691 TGTTGATGTT
29307701 TGATTATGATATAATGAAGTATGA
1 TGATTATGATATAATGAAGTATGA
*
29307725 TGATTATGATATAATGTAGTATGA
1 TGATTATGATATAATGAAGTATGA
29307749 CTCTTAGTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.40, C:0.00, G:0.21, T:0.40
Consensus pattern (24 bp):
TGATTATGATATAATGAAGTATGA
Found at i:29314584 original size:40 final size:40
Alignment explanation
Indices: 29314521--29314745 Score: 323
Period size: 40 Copynumber: 5.7 Consensus size: 40
29314511 GCTACTCGTT
* *
29314521 CAAATG-CTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
29314560 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
29314600 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
29314640 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** * * *
29314680 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
29314721 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
29314746 CATCATTCGA
Statistics
Matches: 173, Mismatches: 8, Indels: 9
0.91 0.04 0.05
Matches are distributed among these distances:
39 9 0.05
40 151 0.87
41 13 0.08
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:29322119 original size:29 final size:29
Alignment explanation
Indices: 29322080--29322154 Score: 107
Period size: 29 Copynumber: 2.6 Consensus size: 29
29322070 GGTTGAGAGA
* *
29322080 ATGGCACTAAGTGTGCGGGCTTGAAA-TGC
1 ATGGCACTAAGTGTGCGAG-TTGAAAGTAC
*
29322109 ATGGCACTAAGTGTGCGAGTTTAAAGTAC
1 ATGGCACTAAGTGTGCGAGTTGAAAGTAC
29322138 ATGGCACTAAGTGTGCG
1 ATGGCACTAAGTGTGCG
29322155 TGGTTGATTA
Statistics
Matches: 42, Mismatches: 3, Indels: 2
0.89 0.06 0.04
Matches are distributed among these distances:
28 5 0.12
29 37 0.88
ACGTcount: A:0.27, C:0.16, G:0.32, T:0.25
Consensus pattern (29 bp):
ATGGCACTAAGTGTGCGAGTTGAAAGTAC
Found at i:29322195 original size:2 final size:2
Alignment explanation
Indices: 29322190--29322220 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
29322180 GCAAACCCAC
*
29322190 TA TA TA AA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
29322221 TTTCTATCAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
TA
Found at i:29336469 original size:24 final size:24
Alignment explanation
Indices: 29336416--29336469 Score: 58
Period size: 24 Copynumber: 2.2 Consensus size: 24
29336406 AAAGTTTGAG
*
29336416 TCATATAGCACTGTGTGCGAGTTA
1 TCATATAGCACTGTGTGCGAGTCA
*
29336440 TTATATAGCACTAAGTGTGCGA-TCA
1 TCATATAGCACT--GTGTGCGAGTCA
29336465 -CATAT
1 TCATAT
29336470 GTAATCACTT
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
24 15 0.60
25 2 0.08
26 8 0.32
ACGTcount: A:0.30, C:0.17, G:0.20, T:0.33
Consensus pattern (24 bp):
TCATATAGCACTGTGTGCGAGTCA
Found at i:29340139 original size:29 final size:26
Alignment explanation
Indices: 29340080--29340150 Score: 79
Period size: 29 Copynumber: 2.6 Consensus size: 26
29340070 GTGACGAGAT
*
29340080 CGGCACTAAGTGTGCGTGGAAATATA
1 CGGCACTAAGTGTGCGTGGAAAAATA
*
29340106 TGGCACTAAGTGTGCAAGCTGGAAAAATA
1 CGGCACTAAGTGTGC--G-TGGAAAAATA
**
29340135 CGGCACTGGGTGTGCG
1 CGGCACTAAGTGTGCG
29340151 AGCTCGGAGG
Statistics
Matches: 37, Mismatches: 5, Indels: 5
0.79 0.11 0.11
Matches are distributed among these distances:
26 14 0.38
27 1 0.03
28 1 0.03
29 21 0.57
ACGTcount: A:0.28, C:0.17, G:0.34, T:0.21
Consensus pattern (26 bp):
CGGCACTAAGTGTGCGTGGAAAAATA
Found at i:29340154 original size:29 final size:29
Alignment explanation
Indices: 29340080--29340141 Score: 85
Period size: 29 Copynumber: 2.2 Consensus size: 29
29340070 GTGACGAGAT
*
29340080 CGGCACTAAGTGTGC--G-TGGAAATATA
1 CGGCACTAAGTGTGCAAGCTGGAAAAATA
*
29340106 TGGCACTAAGTGTGCAAGCTGGAAAAATA
1 CGGCACTAAGTGTGCAAGCTGGAAAAATA
29340135 CGGCACT
1 CGGCACT
29340142 GGGTGTGCGA
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
26 14 0.47
28 1 0.03
29 15 0.50
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (29 bp):
CGGCACTAAGTGTGCAAGCTGGAAAAATA
Found at i:29347934 original size:29 final size:29
Alignment explanation
Indices: 29347900--29347977 Score: 102
Period size: 29 Copynumber: 2.7 Consensus size: 29
29347890 GTGACGAGAT
* *
29347900 CGGCACTAAGTGTGCGTGCTGGAAATATA
1 CGGCACTAAGTGTGCGAGCTGGAAAAATA
* *
29347929 TGGCACTAAGTGTGCAAGCTGGAAAAATA
1 CGGCACTAAGTGTGCGAGCTGGAAAAATA
**
29347958 CGGCACTGGGTGTGCGAGCT
1 CGGCACTAAGTGTGCGAGCT
29347978 CGGAGGGTAT
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.27, C:0.18, G:0.33, T:0.22
Consensus pattern (29 bp):
CGGCACTAAGTGTGCGAGCTGGAAAAATA
Found at i:29354056 original size:29 final size:29
Alignment explanation
Indices: 29354016--29354074 Score: 91
Period size: 29 Copynumber: 2.0 Consensus size: 29
29354006 TCATGGAAGA
* * *
29354016 GGTGGAGAACTTTTTCATTGAGAGTTCGT
1 GGTGAAGAACTTGTTCATTGAGAATTCGT
29354045 GGTGAAGAACTTGTTCATTGAGAATTCGT
1 GGTGAAGAACTTGTTCATTGAGAATTCGT
29354074 G
1 G
29354075 TCAAGGTGGA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.24, C:0.10, G:0.31, T:0.36
Consensus pattern (29 bp):
GGTGAAGAACTTGTTCATTGAGAATTCGT
Found at i:29355428 original size:24 final size:24
Alignment explanation
Indices: 29355393--29355444 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 24
29355383 CAATATTAAA
* *
29355393 TGGCTTGGCCACAAAGTTATGGAG
1 TGGCTTGACCACAAAGCTATGGAG
* *
29355417 TGGCTTGACCACAACGCTATTGAG
1 TGGCTTGACCACAAAGCTATGGAG
29355441 TGGC
1 TGGC
29355445 ATACCCACAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.23, C:0.21, G:0.31, T:0.25
Consensus pattern (24 bp):
TGGCTTGACCACAAAGCTATGGAG
Done.