Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr03 135709677
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 135709677
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 108 of 438
Found at i:31182125 original size:54 final size:54
Alignment explanation
Indices: 31182058--31182297 Score: 295
Period size: 54 Copynumber: 4.5 Consensus size: 54
31182048 TAAAATACTA
* * *
31182058 AAATACCCTTGTAGGGTAGAATTACTAAAATATCCCTATAGGGTAGAATTACCG
1 AAATACCCTTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAGAATTACCG
* * * * * * *
31182112 AAATACCCCTGTAGGGTAGAACTACCGAAATACCCTTGTAAGGTAGAAATACCA
1 AAATACCCTTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAGAATTACCG
* **
31182166 AAATACCCTTGTAGGGTAGAATTACCG-AATACCCCTGTAGGGTAGAATTATTG
1 AAATACCCTTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAGAATTACCG
*
31182219 AAATACCCTTGTAGGGTAGAATTA-TCGAAATACCCCTGTAGGGTAGAATTATCG
1 AAATACCCTTGTAGGGTAGAATTACT-GAAATACCCCTGTAGGGTAGAATTACCG
* * * *
31182273 AGATACCGTTGTGGGGTAAAATTAC
1 AAATACCCTTGTAGGGTAGAATTAC
31182298 CATTTTGCCC
Statistics
Matches: 159, Mismatches: 24, Indels: 5
0.85 0.13 0.03
Matches are distributed among these distances:
53 45 0.28
54 114 0.72
ACGTcount: A:0.35, C:0.17, G:0.21, T:0.26
Consensus pattern (54 bp):
AAATACCCTTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAGAATTACCG
Found at i:31182174 original size:134 final size:133
Alignment explanation
Indices: 31182032--31182284 Score: 314
Period size: 134 Copynumber: 1.9 Consensus size: 133
31182022 GAAATTATCG
* *
31182032 AAAAACCCTCG-ATTCGTA-AAATACTAAAATACCCTTGTAGGGTAGAATTACTAAAATATCCC-
1 AAAAACCCTCGTA-GCGTAGAAATAC-AAAATACCCCTGTAGGGTAGAATTACTAAAATA-CCCT
31182094 TATAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAACTACCGAAATACCCTTGTAAGGTAGA
63 TATAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAACTACCGAAATACCCTTGTAAGGTAGA
31182159 AATACC
128 AATACC
* * * ** * * *
31182165 AAAATACCCTTGTAGGGTAGAATTACCGAATACCCCTGTAGGGTAGAATTATTGAAATACCCTTG
1 AAAA-ACCCTCGTAGCGTAGAAATACAAAATACCCCTGTAGGGTAGAATTACTAAAATACCCTTA
* * * * *
31182230 TAGGGTAGAATTATCGAAATACCCCTGTAGGGTAGAATTATCGAGATACCGTTGT
65 TAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAACTACCGAAATACCCTTGT
31182285 GGGGTAAAAT
Statistics
Matches: 101, Mismatches: 15, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
133 7 0.07
134 88 0.87
135 6 0.06
ACGTcount: A:0.36, C:0.19, G:0.19, T:0.26
Consensus pattern (133 bp):
AAAAACCCTCGTAGCGTAGAAATACAAAATACCCCTGTAGGGTAGAATTACTAAAATACCCTTAT
AGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAACTACCGAAATACCCTTGTAAGGTAGAAAT
ACC
Found at i:31182537 original size:25 final size:25
Alignment explanation
Indices: 31182503--31182572 Score: 104
Period size: 25 Copynumber: 2.8 Consensus size: 25
31182493 AGGAAGTGCT
*
31182503 AAAAGGGCTTTGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCA
* * *
31182528 AAAAGGGCTTTACACCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTACCA
31182553 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
31182573 ATTAAAAGAG
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 39 1.00
ACGTcount: A:0.29, C:0.24, G:0.21, T:0.26
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCA
Found at i:31182585 original size:24 final size:24
Alignment explanation
Indices: 31182502--31182585 Score: 89
Period size: 25 Copynumber: 3.4 Consensus size: 24
31182492 GAGGAAGTGC
*
31182502 TAAAAGGGCTTTGCCCCAGTTTACC
1 TAAAAGGGCTTTGCCCCAGTTTA-T
* * *
31182527 GAAAAGGGCTTTACACCAGTTTAT
1 TAAAAGGGCTTTGCCCCAGTTTAT
*
31182551 CAAAAAGGGCTTTGCCCCAG-TTAT
1 -TAAAAGGGCTTTGCCCCAGTTTAT
31182575 TAAAAGAGGCT
1 TAAAAG-GGCT
31182586 AGGCCTCCAG
Statistics
Matches: 49, Mismatches: 8, Indels: 5
0.79 0.13 0.08
Matches are distributed among these distances:
23 5 0.10
24 8 0.16
25 36 0.73
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.26
Consensus pattern (24 bp):
TAAAAGGGCTTTGCCCCAGTTTAT
Found at i:31183634 original size:55 final size:53
Alignment explanation
Indices: 31183547--31183791 Score: 204
Period size: 55 Copynumber: 4.6 Consensus size: 53
31183537 ATTAAGGTTT
* *
31183547 AAGGATACCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTCTAAGGC
1 AAGGAAACCATGTAAGACCATGCCAAGACATGG-AATTGGTAA-GTTTCTAAGGC
* * * * *
31183602 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTACTATAAGGC
1 AAGGAAACCATGTAAGACCATGCCAAGACATGGAATTGGTAAGTT--TCTAAGGC
* * *
31183657 AAAGG--TCTCATGTAAGACCATGCCAATG-CATGGCATTGGTGAG-TTCATAAGGC
1 -AAGGAAAC-CATGTAAGACCATGCCAA-GACATGGAATTGGTAAGTTTC-TAAGGC
*
31183710 AA-GAATACCATGTAAGACCATGTCAAGACATGGCAA-TGGTAAGTTTC-AA---
1 AAGGAA-ACCATGTAAGACCATGCCAAGACATGG-AATTGGTAAGTTTCTAAGGC
* * *
31183759 AAGGATACCATGTAAGACCATGACAAGTCATGG
1 AAGGAAACCATGTAAGACCATGCCAAGACATGG
31183792 CAACGGTAAG
Statistics
Matches: 157, Mismatches: 20, Indels: 32
0.75 0.10 0.15
Matches are distributed among these distances:
49 27 0.17
50 2 0.01
51 1 0.01
52 6 0.04
53 37 0.24
54 13 0.08
55 66 0.42
56 5 0.03
ACGTcount: A:0.37, C:0.17, G:0.24, T:0.22
Consensus pattern (53 bp):
AAGGAAACCATGTAAGACCATGCCAAGACATGGAATTGGTAAGTTTCTAAGGC
Found at i:31183753 original size:108 final size:110
Alignment explanation
Indices: 31183555--31183754 Score: 300
Period size: 108 Copynumber: 1.8 Consensus size: 110
31183545 TTAAGGATAC
*
31183555 CATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTCTAAGGCAAGGAAATCATGTAAGAC
1 CATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGAC
*
31183620 CATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTCT
66 CATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTCT
* * *
31183665 CATGTAAGACCATGCCAATGCATGG-CATTGGTGA-G-TTCATAAGGCAA-GAATACCATGTAAG
1 CATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTC-TAAGGCAAGGAA-ACCATGTAAG
*
31183726 ACCATGTCAAGACATGGCAATGGTAAGTT
64 ACCATGTCAAGACATGGCAATGATAAGTT
31183755 TCAAAAGGAT
Statistics
Matches: 82, Mismatches: 6, Indels: 6
0.87 0.06 0.06
Matches are distributed among these distances:
107 6 0.07
108 45 0.55
109 7 0.09
110 24 0.29
ACGTcount: A:0.35, C:0.17, G:0.24, T:0.23
Consensus pattern (110 bp):
CATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGAC
CATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTCT
Found at i:31184014 original size:16 final size:16
Alignment explanation
Indices: 31183993--31184023 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
31183983 ATAAATTTGA
31183993 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
31184009 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
31184024 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:31187747 original size:40 final size:40
Alignment explanation
Indices: 31187688--31187895 Score: 202
Period size: 40 Copynumber: 5.2 Consensus size: 40
31187678 CAATTGAATG
* * * *
31187688 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
31187728 ATATCCGGGTTAAGACCCGAAGGCCA-TTGTGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGG-CATTTGTGCAAGTAATT
* * **
31187768 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
31187808 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
31187848 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
31187888 ATATCCGG
1 ATATCCGG
31187896 TTGTATTCCG
Statistics
Matches: 140, Mismatches: 26, Indels: 4
0.82 0.15 0.02
Matches are distributed among these distances:
39 2 0.01
40 136 0.97
41 2 0.01
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:31187826 original size:80 final size:80
Alignment explanation
Indices: 31187690--31187895 Score: 236
Period size: 80 Copynumber: 2.6 Consensus size: 80
31187680 ATTGAATGAT
* * ** * * *
31187690 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCCA-
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGG-CAT
*
31187754 TTGTGCTAGT-GACCAC
65 TTGTGCAAGTCGACC-C
* * *
31187770 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCATT
** *
31187835 TGTGCAAGTCGTTCT
66 TGTGCAAGTCGACCC
* *
31187850 ATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
31187896 TTGTATTCCG
Statistics
Matches: 107, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
79 2 0.02
80 103 0.96
81 2 0.02
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCATT
TGTGCAAGTCGACCC
Found at i:31194856 original size:40 final size:40
Alignment explanation
Indices: 31194784--31194990 Score: 193
Period size: 40 Copynumber: 5.2 Consensus size: 40
31194774 CAATTGAATG
* * ** *
31194784 ATATCC-GGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAATT
* * * **
31194823 ATATCCGGGTTAAGACCCGAAGGCCATT-GTGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGG-CATTCGTGCAAGTAATT
* **
31194863 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAATT
* * * **
31194903 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAATT
* * **
31194943 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAATT
31194983 ATATCCGG
1 ATATCCGG
31194991 TTGTATTCCG
Statistics
Matches: 140, Mismatches: 25, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
39 10 0.07
40 126 0.90
41 4 0.03
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAATT
Found at i:31194923 original size:80 final size:80
Alignment explanation
Indices: 31194825--31194990 Score: 219
Period size: 80 Copynumber: 2.1 Consensus size: 80
31194815 TAGTAATTAT
* *
31194825 ATCCGGGTTAAGACCCGAAGGCCA-TTGTGCTAGT-GACCACATCCGGGCTAAGACCCGAAGGCA
1 ATCCGGGCTAAGACCCGAAGG-CATTTGTGCAAGTCGACC-CATCCGGGCTAAGACCCGAAGGCA
*
31194888 TTCGTGCAAGTTGTTAA
64 TTCGTGCAAGTGGTTAA
* ** *
31194905 ATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTTCTATCCGGGCTAAGACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTCGACCCATCCGGGCTAAGACCCGAAGGCATT
* *
31194970 CGTGCATGTGGTTAT
66 CGTGCAAGTGGTTAA
31194985 ATCCGG
1 ATCCGG
31194991 TTGTATTCCG
Statistics
Matches: 75, Mismatches: 9, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
79 2 0.03
80 71 0.95
81 2 0.03
ACGTcount: A:0.24, C:0.25, G:0.28, T:0.23
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTCGACCCATCCGGGCTAAGACCCGAAGGCATT
CGTGCAAGTGGTTAA
Found at i:31199598 original size:130 final size:130
Alignment explanation
Indices: 31199423--31199682 Score: 484
Period size: 130 Copynumber: 2.0 Consensus size: 130
31199413 GTTATTCAGG
* * *
31199423 TACTTGAAGATATGCTTAGATGTTGTGTACTGGAATTTCAAGGCAGTTGGGAAAAATATTTATCA
1 TACTTGAAGATATGCTTAGATGCTATGTACTGGAATTTCAAGGCAGTTGGGAAAAATATTTACCA
31199488 TTAGTAGAGTTTGCCTACAATAATAGTTATCAGTCGAGTTTGAAGATGGCACCTTATGAAGCTTT
66 TTAGTAGAGTTTGCCTACAATAATAGTTATCAGTCGAGTTTGAAGATGGCACCTTATGAAGCTTT
31199553 TACTTGAAGATATGCTTAGATGCTATGTACTGGAATTTCAAGGCAGTTGGGAAAAATATTTACCA
1 TACTTGAAGATATGCTTAGATGCTATGTACTGGAATTTCAAGGCAGTTGGGAAAAATATTTACCA
*
31199618 TTAGTAGAGTTTGCCTACAATAATAGTTATCAGTCGAGTTTGATGATGGCACCTTATGAAGCTTT
66 TTAGTAGAGTTTGCCTACAATAATAGTTATCAGTCGAGTTTGAAGATGGCACCTTATGAAGCTTT
31199683 GTATGGACGT
Statistics
Matches: 126, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
130 126 1.00
ACGTcount: A:0.31, C:0.12, G:0.22, T:0.35
Consensus pattern (130 bp):
TACTTGAAGATATGCTTAGATGCTATGTACTGGAATTTCAAGGCAGTTGGGAAAAATATTTACCA
TTAGTAGAGTTTGCCTACAATAATAGTTATCAGTCGAGTTTGAAGATGGCACCTTATGAAGCTTT
Found at i:31201626 original size:55 final size:53
Alignment explanation
Indices: 31201539--31201793 Score: 234
Period size: 55 Copynumber: 4.8 Consensus size: 53
31201529 ATTAGGGTTT
*
31201539 AAGGATACCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGC
1 AAGGATATCATGTAAGACCATGCCAAGGCATGGC-ATTGGTAA-GTTTCTAAGGC
* * * * * * *
31201594 AAGGAAATCATGTAATACTATGTCAAGACATGGCATTGATAAGTTACTATAAGGC
1 AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGGTAAGTT--TCTAAGGC
* * * *
31201649 AAAGG-TCTCATGTAAGGCCAAGCCAAGGCATGGCATTGGTGAG-TTCATAAGGC
1 -AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGGTAAGTTTC-TAAGGC
* * *
31201702 AAGGATACCATGTAAGACCATGTCAAGGCATGGCAATGGTAAGTTTC-AA---
1 AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGGTAAGTTTCTAAGGC
* * * * *
31201751 AAGGATACCACGTAAGACCATGACAAGTCATGGCAATGGTAAG
1 AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGGTAAG
31201794 GTACCCGCGT
Statistics
Matches: 165, Mismatches: 29, Indels: 18
0.78 0.14 0.08
Matches are distributed among these distances:
49 40 0.24
52 7 0.04
53 40 0.24
54 11 0.07
55 63 0.38
56 4 0.02
ACGTcount: A:0.36, C:0.17, G:0.25, T:0.22
Consensus pattern (53 bp):
AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGGTAAGTTTCTAAGGC
Found at i:31201725 original size:108 final size:110
Alignment explanation
Indices: 31201547--31201746 Score: 280
Period size: 108 Copynumber: 1.8 Consensus size: 110
31201537 TTAAGGATAC
* * *
31201547 CATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAATCATGTAATAC
1 CATGTAAGACCAAGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGAC
* *
31201612 TATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTCT
66 CATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTCT
* * *
31201657 CATGTAAGGCCAAGCCAAGGCATGGC-ATTGGTGA-G-TTCATAAGGCAAGGATACCATGTAAGA
1 CATGTAAGACCAAGCCAAGGCATGGCAATTGGTAAGGTTTC-TAAGGCAAGGAAACCATGTAAGA
* *
31201719 CCATGTCAAGGCATGGCAATGGTAAGTT
65 CCATGTCAAGACATGGCAATGATAAGTT
31201747 TCAAAAGGAT
Statistics
Matches: 79, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
107 3 0.04
108 45 0.57
109 7 0.09
110 24 0.30
ACGTcount: A:0.34, C:0.17, G:0.26, T:0.23
Consensus pattern (110 bp):
CATGTAAGACCAAGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGAC
CATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTCT
Found at i:31201993 original size:4 final size:4
Alignment explanation
Indices: 31201984--31202032 Score: 53
Period size: 4 Copynumber: 12.2 Consensus size: 4
31201974 TAAATTTGAT
** ** *
31201984 TAAG TAAG TAAG TATT TAAG TAAG TAAG TATT TAAG TAAG TGAG TAAG
1 TAAG TAAG TAAG TAAG TAAG TAAG TAAG TAAG TAAG TAAG TAAG TAAG
31202032 T
1 T
31202033 GAAGAAGTTT
Statistics
Matches: 35, Mismatches: 10, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
4 35 1.00
ACGTcount: A:0.43, C:0.00, G:0.22, T:0.35
Consensus pattern (4 bp):
TAAG
Found at i:31202004 original size:16 final size:16
Alignment explanation
Indices: 31201983--31202029 Score: 85
Period size: 16 Copynumber: 2.9 Consensus size: 16
31201973 ATAAATTTGA
31201983 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
31201999 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
31202015 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
31202030 AGTGAAGAAG
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
16 30 1.00
ACGTcount: A:0.43, C:0.00, G:0.21, T:0.36
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:31206347 original size:20 final size:20
Alignment explanation
Indices: 31206322--31206368 Score: 78
Period size: 20 Copynumber: 2.4 Consensus size: 20
31206312 GATTTGATGT
31206322 ACATGAT-TGATATGATATGC
1 ACATGATATG-TATGATATGC
31206342 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
31206362 ACATGAT
1 ACATGAT
31206369 GTATTCATAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
20 24 0.92
21 2 0.08
ACGTcount: A:0.36, C:0.11, G:0.19, T:0.34
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:31206497 original size:50 final size:49
Alignment explanation
Indices: 31206416--31206523 Score: 139
Period size: 50 Copynumber: 2.2 Consensus size: 49
31206406 AGGAAGTGCA
* *
31206416 AAAAGGGC-TATGCCCCAGTTTACCGAGAAGGGCTTTTGCCCTAGTTTATT
1 AAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGC-TTTGCCCCAG-TTATT
* *
31206466 AAAAGGGCTTTTGCCCCAGTTTATC-AAAAGGGCTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTTTGCCCCAGTTATT
31206514 AAAAGAGGCT
1 AAAAG-GGCT
31206524 AGGCCTCCAG
Statistics
Matches: 52, Mismatches: 4, Indels: 5
0.85 0.07 0.08
Matches are distributed among these distances:
48 10 0.19
49 13 0.25
50 15 0.29
51 14 0.27
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29
Consensus pattern (49 bp):
AAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTTTGCCCCAGTTATT
Found at i:31206507 original size:24 final size:24
Alignment explanation
Indices: 31206416--31206523 Score: 119
Period size: 25 Copynumber: 4.4 Consensus size: 24
31206406 AGGAAGTGCA
* *
31206416 AAAAGGGCTATGCCCCAGTTTACC
1 AAAAGGGCTTTGCCCCAGTTTATC
* * *
31206440 GAGAAGGGCTTTTGCCCTAGTTTATT
1 -AAAAGGGC-TTTGCCCCAGTTTATC
31206466 AAAAGGGCTTTTGCCCCAGTTTATC
1 AAAAGGGC-TTTGCCCCAGTTTATC
*
31206491 AAAAGGGCTTTGCCCCAG-TTATT
1 AAAAGGGCTTTGCCCCAGTTTATC
31206514 AAAAGAGGCT
1 AAAAG-GGCT
31206524 AGGCCTCCAG
Statistics
Matches: 72, Mismatches: 9, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
23 9 0.12
24 14 0.19
25 37 0.51
26 12 0.17
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29
Consensus pattern (24 bp):
AAAAGGGCTTTGCCCCAGTTTATC
Found at i:31206770 original size:31 final size:33
Alignment explanation
Indices: 31206732--31206813 Score: 96
Period size: 38 Copynumber: 2.4 Consensus size: 33
31206722 CATTTACAAT
*
31206732 AAAGGCTTCGGCC-T-TGTAATATGAAATATGA
1 AAAGGCTTCGGCCGTATGAAATATGAAATATGA
31206763 AAAGGCTTCGGTCCAGTGTTATGAAATATGAAATATGA
1 AAAGGCTTCGG-CC---G-TATGAAATATGAAATATGA
31206801 AAAGGCTTCGGCC
1 AAAGGCTTCGGCC
31206814 CAGTATATGC
Statistics
Matches: 43, Mismatches: 1, Indels: 8
0.83 0.02 0.15
Matches are distributed among these distances:
31 11 0.26
32 2 0.05
37 3 0.07
38 27 0.63
ACGTcount: A:0.34, C:0.15, G:0.24, T:0.27
Consensus pattern (33 bp):
AAAGGCTTCGGCCGTATGAAATATGAAATATGA
Found at i:31207660 original size:20 final size:20
Alignment explanation
Indices: 31207603--31207673 Score: 83
Period size: 20 Copynumber: 3.6 Consensus size: 20
31207593 AAAAAGACAA
* * *
31207603 ATTTTAAATTTCTATAAA-T
1 ATTTTGAATTTTTAAAAATT
*
31207622 ATTTTGAA-TCTTAAAAATT
1 ATTTTGAATTTTTAAAAATT
*
31207641 ATTTTGAATTTTTGAAAATT
1 ATTTTGAATTTTTAAAAATT
31207661 ATTTTGAATTTTT
1 ATTTTGAATTTTT
31207674 TTTTTGTAAT
Statistics
Matches: 44, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
18 6 0.14
19 16 0.36
20 22 0.50
ACGTcount: A:0.37, C:0.03, G:0.06, T:0.55
Consensus pattern (20 bp):
ATTTTGAATTTTTAAAAATT
Found at i:31211889 original size:115 final size:115
Alignment explanation
Indices: 31211687--31211916 Score: 433
Period size: 115 Copynumber: 2.0 Consensus size: 115
31211677 ATGTAATTCA
*
31211687 CAATAGTAGGACTTCTTCTCCAAGAGAGAGTAAGGTTGTTGGTGGAAGTGCATGGTTGACCTTTC
1 CAATAGTAGGACTTCTTCTCCAAGAGAGAGAAAGGTTGTTGGTGGAAGTGCATGGTTGACCTTTC
31211752 ACTCGATCCATGATGAGACCACAAGTAAGGTAGGAAAAACAGATTTCCTG
66 ACTCGATCCATGATGAGACCACAAGTAAGGTAGGAAAAACAGATTTCCTG
*
31211802 CAATAGTAGGACTTCTTCTCCAAGAGAGGGAAAGGTTGTTGGTGGAAGTGCATGGTTGACCTTTC
1 CAATAGTAGGACTTCTTCTCCAAGAGAGAGAAAGGTTGTTGGTGGAAGTGCATGGTTGACCTTTC
*
31211867 ACTTGATCCATGATGAGACCACAAGTAAGGTAGGAAAAACAGATTTCCTG
66 ACTCGATCCATGATGAGACCACAAGTAAGGTAGGAAAAACAGATTTCCTG
31211917 AGGTAATAAG
Statistics
Matches: 112, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
115 112 1.00
ACGTcount: A:0.30, C:0.17, G:0.27, T:0.26
Consensus pattern (115 bp):
CAATAGTAGGACTTCTTCTCCAAGAGAGAGAAAGGTTGTTGGTGGAAGTGCATGGTTGACCTTTC
ACTCGATCCATGATGAGACCACAAGTAAGGTAGGAAAAACAGATTTCCTG
Found at i:31223942 original size:10 final size:10
Alignment explanation
Indices: 31223924--31223953 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
31223914 TTCACACAAC
*
31223924 GCAAAGTCTA
1 GCAATGTCTA
31223934 GCAATGTCTA
1 GCAATGTCTA
31223944 GCAATGTCTA
1 GCAATGTCTA
31223954 TCGATTTTAC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.33, C:0.20, G:0.20, T:0.27
Consensus pattern (10 bp):
GCAATGTCTA
Found at i:31230761 original size:56 final size:56
Alignment explanation
Indices: 31230701--31230931 Score: 311
Period size: 56 Copynumber: 4.1 Consensus size: 56
31230691 TCCCAGACAG
* * * *
31230701 GGTCTTACTCGTAAACACATATCAAAATCACATATCGATGCCAATGTATTAAACGT
1 GGTCTTACTCGCACACACATATCGAAATCACATATCGATGCCAACGTATTAAACGT
* * *
31230757 GGTCTTACTTGCACACACATATTGAAATCACATATCGATGCCAACGTATTAGACGT
1 GGTCTTACTCGCACACACATATCGAAATCACATATCGATGCCAACGTATTAAACGT
* * * *
31230813 GGTCTTACTTGCACACACATATCGAAATTACGTATCGATGCCAACGTATTAAATGT
1 GGTCTTACTCGCACACACATATCGAAATCACATATCGATGCCAACGTATTAAACGT
* * * * *
31230869 -GTCTTACTCGCACACACATATTGGAATCACATATCGATACCAACGCATTAAATGT
1 GGTCTTACTCGCACACACATATCGAAATCACATATCGATGCCAACGTATTAAACGT
31230924 GGTCTTAC
1 GGTCTTAC
31230932 ACTTAATCAC
Statistics
Matches: 155, Mismatches: 19, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
55 48 0.31
56 107 0.69
ACGTcount: A:0.33, C:0.23, G:0.15, T:0.29
Consensus pattern (56 bp):
GGTCTTACTCGCACACACATATCGAAATCACATATCGATGCCAACGTATTAAACGT
Found at i:31230912 original size:111 final size:112
Alignment explanation
Indices: 31230701--31230931 Score: 329
Period size: 111 Copynumber: 2.1 Consensus size: 112
31230691 TCCCAGACAG
* *
31230701 GGTCTTACTCGTAAACACATATCAAAATCACATATCGATGCCAATGTATTAAACGTGGTCTTACT
1 GGTCTTACTCGCAAACACATATCAAAATCACATATCGATGCCAACGTATTAAACGTGGTCTTACT
* * * *
31230766 TGCACACACATATTGAAATCACATATCGATGCCAACGTATTAGACGT
66 CGCACACACATATTGAAATCACATATCGATACCAACGCATTAAACGT
* * * * * *
31230813 GGTCTTACTTGCACACACATATCGAAATTACGTATCGATGCCAACGTATTAAATGT-GTCTTACT
1 GGTCTTACTCGCAAACACATATCAAAATCACATATCGATGCCAACGTATTAAACGTGGTCTTACT
* *
31230877 CGCACACACATATTGGAATCACATATCGATACCAACGCATTAAATGT
66 CGCACACACATATTGAAATCACATATCGATACCAACGCATTAAACGT
31230924 GGTCTTAC
1 GGTCTTAC
31230932 ACTTAATCAC
Statistics
Matches: 105, Mismatches: 14, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
111 57 0.54
112 48 0.46
ACGTcount: A:0.33, C:0.23, G:0.15, T:0.29
Consensus pattern (112 bp):
GGTCTTACTCGCAAACACATATCAAAATCACATATCGATGCCAACGTATTAAACGTGGTCTTACT
CGCACACACATATTGAAATCACATATCGATACCAACGCATTAAACGT
Found at i:31230969 original size:43 final size:43
Alignment explanation
Indices: 31230922--31231126 Score: 186
Period size: 43 Copynumber: 4.8 Consensus size: 43
31230912 CGCATTAAAT
* * *
31230922 GTGGTCTTACACTTAATCACATATCTATGCTAATGTCCCAAAC
1 GTGGTCTTACACGTAATCACATATCTATGCCAATGTCCCAGAC
* * * * **
31230965 GTGGTGTTACACAAG-AA-CACCTATCAATGCCACTGTCCTTGAC
1 GTGGTCTTACAC--GTAATCACATATCTATGCCAATGTCCCAGAC
** * **
31231008 AG-GGTCGAACACGTAATCACATATCGATGCCAACATCCCAGAC
1 -GTGGTCTTACACGTAATCACATATCTATGCCAATGTCCCAGAC
* *
31231051 GTGGTCTTACATGTAATCACATAT-TGATGCCAATGTCCCAGAT
1 GTGGTCTTACACGTAATCACATATCT-ATGCCAATGTCCCAGAC
31231094 GTGGTCTTACACGTAATCACATAT-TGATGCCAA
1 GTGGTCTTACACGTAATCACATATCT-ATGCCAA
31231127 CTCAAAAATG
Statistics
Matches: 128, Mismatches: 27, Indels: 14
0.76 0.16 0.08
Matches are distributed among these distances:
41 1 0.01
42 3 0.02
43 121 0.95
44 3 0.02
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.27
Consensus pattern (43 bp):
GTGGTCTTACACGTAATCACATATCTATGCCAATGTCCCAGAC
Found at i:31237536 original size:27 final size:27
Alignment explanation
Indices: 31237506--31237617 Score: 161
Period size: 27 Copynumber: 4.1 Consensus size: 27
31237496 TACTGAAATG
*
31237506 CCCTCGATTTGTAGAATTACCATTTTA
1 CCCTCGATTTATAGAATTACCATTTTA
* *
31237533 CCCTCGATTTATAGAATTATCGTTTTA
1 CCCTCGATTTATAGAATTACCATTTTA
* *
31237560 CCCTCAATTTATAGAATTACCGTTTTA
1 CCCTCGATTTATAGAATTACCATTTTA
* *
31237587 CCCTTGATTTACAGAATTACCATTTTA
1 CCCTCGATTTATAGAATTACCATTTTA
31237614 CCCT
1 CCCT
31237618 ATATTAGTAA
Statistics
Matches: 76, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 76 1.00
ACGTcount: A:0.27, C:0.23, G:0.09, T:0.41
Consensus pattern (27 bp):
CCCTCGATTTATAGAATTACCATTTTA
Found at i:31237631 original size:27 final size:27
Alignment explanation
Indices: 31237520--31237635 Score: 96
Period size: 27 Copynumber: 4.3 Consensus size: 27
31237510 CGATTTGTAG
*
31237520 AATTACCATTTTACCCTCGAT-TTATAG
1 AATTACCATTTTACCCTC-ATATTATAA
* * *
31237547 AATTATCGTTTTACCCTCA-ATTTATAG
1 AATTACCATTTTACCCTCATA-TTATAA
* * * *
31237574 AATTACCGTTTTACCCTTGAT-TTACAG
1 AATTACCATTTTACCC-TCATATTATAA
31237601 AATTACCATTTTACCCT-ATATTAGTAA
1 AATTACCATTTTACCCTCATATTA-TAA
31237628 AATTACCA
1 AATTACCA
31237636 AAATACCCTG
Statistics
Matches: 75, Mismatches: 8, Indels: 12
0.79 0.08 0.13
Matches are distributed among these distances:
25 2 0.03
26 5 0.07
27 66 0.88
28 2 0.03
ACGTcount: A:0.32, C:0.21, G:0.07, T:0.41
Consensus pattern (27 bp):
AATTACCATTTTACCCTCATATTATAA
Found at i:31237632 original size:54 final size:54
Alignment explanation
Indices: 31237506--31237635 Score: 147
Period size: 54 Copynumber: 2.4 Consensus size: 54
31237496 TACTGAAATG
* * * * * *
31237506 CCCTCGATTTGTAGAATTACCATTTTACCCTCGATTTATAGAATTATCGTTTTA
1 CCCTCAATTTATAAAATTACCATTTTACCCTCGATTTACAGAATTACCATTTTA
* * *
31237560 CCCTCAATTTATAGAATTACCGTTTTACCCTTGATTTACAGAATTACCATTTTA
1 CCCTCAATTTATAAAATTACCATTTTACCCTCGATTTACAGAATTACCATTTTA
31237614 CCCT--ATATTAGTAAAATTACCA
1 CCCTCAAT-TTA-TAAAATTACCA
31237636 AAATACCCTG
Statistics
Matches: 65, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
52 2 0.03
53 3 0.05
54 60 0.92
ACGTcount: A:0.30, C:0.22, G:0.08, T:0.40
Consensus pattern (54 bp):
CCCTCAATTTATAAAATTACCATTTTACCCTCGATTTACAGAATTACCATTTTA
Found at i:31237642 original size:27 final size:26
Alignment explanation
Indices: 31237624--31237793 Score: 171
Period size: 27 Copynumber: 6.4 Consensus size: 26
31237614 CCCTATATTA
* *
31237624 GTAAAATTACCAAAATACCCTGGTCT
1 GTAAAATTACCAAAATACCCTGATTT
* * *
31237650 GTAAAATTGCTAAAATACCCTTGGTTT
1 GTAAAATTACCAAAATACCC-TGATTT
*
31237677 ATAAAATTACCAAAATACCCCT-AGTTT
1 GTAAAATTACCAAAATA-CCCTGA-TTT
* *
31237704 GTAAAGTTACCAAAATACCACTGGTTT
1 GTAAAATTACCAAAATACC-CTGATTT
* * *
31237731 GTGAAATTACCGAAATACCCTCAATTT
1 GTAAAATTACCAAAATACCCT-GATTT
31237758 GTAAAATTACCAAAATACCCTGATTT
1 GTAAAATTACCAAAATACCCTGATTT
**
31237784 ACAAAATTAC
1 GTAAAATTAC
31237794 AGAAATATCC
Statistics
Matches: 118, Mismatches: 20, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
26 34 0.29
27 81 0.69
28 3 0.03
ACGTcount: A:0.40, C:0.20, G:0.10, T:0.30
Consensus pattern (26 bp):
GTAAAATTACCAAAATACCCTGATTT
Found at i:31237729 original size:54 final size:52
Alignment explanation
Indices: 31237625--31237887 Score: 206
Period size: 54 Copynumber: 4.9 Consensus size: 52
31237615 CCTATATTAG
* * * *
31237625 TAAAATTACCAAAATACCCTGGTCTGTAAAATTGCTAAAATACCCTTGGTTTA
1 TAAAATTACCAAAATACCCTAGTTTGTAAAATTACCAAAATACCC-TGGTTTA
* *
31237678 TAAAATTACCAAAATACCCCTAGTTTGTAAAGTTACCAAAATACCACTGGTTTG
1 TAAAATTACCAAAATA-CCCTAGTTTGTAAAATTACCAAAATACC-CTGGTTTA
* * * *
31237732 TGAAATTACCGAAATACCCTCAATTTGTAAAATTACCAAAATACCCTGATTTA
1 TAAAATTACCAAAATACCCT-AGTTTGTAAAATTACCAAAATACCCTGGTTTA
* * * * * *
31237785 CAAAATTA-CAGAAATATCCTTGACTTTTTAAAAATTA-TAGAAATACCATTGGTTTA
1 TAAAATTACCA-AAATA-CCCT-AGTTTGT-AAAATTACCA-AAATACC-CTGGTTTA
* ** * * * *
31237841 CAAAATTACTGAAATACCCTTGGTTTGTAGATTTACCAAAACACCCT
1 TAAAATTACCAAAATACCC-TAGTTTGTAAAATTACCAAAATACCCT
31237888 TATAGGATGA
Statistics
Matches: 166, Mismatches: 33, Indels: 22
0.75 0.15 0.10
Matches are distributed among these distances:
52 1 0.01
53 38 0.23
54 85 0.51
55 22 0.13
56 20 0.12
ACGTcount: A:0.40, C:0.19, G:0.10, T:0.32
Consensus pattern (52 bp):
TAAAATTACCAAAATACCCTAGTTTGTAAAATTACCAAAATACCCTGGTTTA
Found at i:31237763 original size:81 final size:80
Alignment explanation
Indices: 31237624--31237777 Score: 209
Period size: 81 Copynumber: 1.9 Consensus size: 80
31237614 CCCTATATTA
* * ***
31237624 GTAAAATTACCAAAATACCCTGGTCTGTAAAATTGCTAAAATACCCTTGGTTTATAAAATTACCA
1 GTAAAATTACCAAAATACCCTGGTCTGTAAAATTACCAAAATACCCTCAATTTATAAAATTACCA
31237689 AAATACCCCTAGTTT
66 AAATACCCCTAGTTT
* * * * *
31237704 GTAAAGTTACCAAAATACCACTGGTTTGTGAAATTACCGAAATACCCTCAATTTGTAAAATTACC
1 GTAAAATTACCAAAATACC-CTGGTCTGTAAAATTACCAAAATACCCTCAATTTATAAAATTACC
31237769 AAAATACCC
65 AAAATACCC
31237778 TGATTTACAA
Statistics
Matches: 63, Mismatches: 10, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
80 18 0.29
81 45 0.71
ACGTcount: A:0.40, C:0.21, G:0.10, T:0.29
Consensus pattern (80 bp):
GTAAAATTACCAAAATACCCTGGTCTGTAAAATTACCAAAATACCCTCAATTTATAAAATTACCA
AAATACCCCTAGTTT
Found at i:31237854 original size:27 final size:26
Alignment explanation
Indices: 31237811--31237866 Score: 78
Period size: 27 Copynumber: 2.1 Consensus size: 26
31237801 TCCTTGACTT
31237811 TTTAAAAATTATAGAAATACCATTGG
1 TTTAAAAATTATAGAAATACCATTGG
*
31237837 TTTACAAAATTACT-GAAATACCCTTGG
1 TTTA-AAAATTA-TAGAAATACCATTGG
31237864 TTT
1 TTT
31237867 GTAGATTTAC
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
26 4 0.15
27 22 0.81
28 1 0.04
ACGTcount: A:0.39, C:0.12, G:0.11, T:0.38
Consensus pattern (26 bp):
TTTAAAAATTATAGAAATACCATTGG
Found at i:31238560 original size:20 final size:20
Alignment explanation
Indices: 31238535--31238576 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
31238525 AACACTCGAA
31238535 AATATTGATAATTGTTGATG
1 AATATTGATAATTGTTGATG
31238555 AATATTGATAATTGTTGATG
1 AATATTGATAATTGTTGATG
31238575 AA
1 AA
31238577 CATGGAAAAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.38, C:0.00, G:0.19, T:0.43
Consensus pattern (20 bp):
AATATTGATAATTGTTGATG
Found at i:31238712 original size:20 final size:20
Alignment explanation
Indices: 31238678--31238754 Score: 97
Period size: 20 Copynumber: 4.0 Consensus size: 20
31238668 GATACGTGGG
31238678 GTATGATAT--ACATGAT-T
1 GTATGATATGCACATGATAT
31238695 GATATGATATGCACATGATAT
1 G-TATGATATGCACATGATAT
*
31238716 GTATAATATGCACATGATAT
1 GTATGATATGCACATGATAT
* *
31238736 GTATGAAATGCATATGATA
1 GTATGATATGCACATGATA
31238755 AATTCATAAA
Statistics
Matches: 52, Mismatches: 4, Indels: 5
0.85 0.07 0.08
Matches are distributed among these distances:
17 1 0.02
18 8 0.15
20 41 0.79
21 2 0.04
ACGTcount: A:0.39, C:0.08, G:0.18, T:0.35
Consensus pattern (20 bp):
GTATGATATGCACATGATAT
Found at i:31238960 original size:25 final size:26
Alignment explanation
Indices: 31238803--31238977 Score: 255
Period size: 26 Copynumber: 6.8 Consensus size: 26
31238793 GAGGAAGTGC
*
31238803 AAAAGGGCTTATGCCCTAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
*
31238829 AAAAGGGCTTATGCCCCAGTTTACTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
*
31238855 AAAAGGGCTTATGCCCTAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
*
31238881 AAAAGGGCTTATGCCCCAGTTTATCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
*
31238907 AAAAGGGCTTATGCTCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
* * **
31238933 AAAAAGACTT-TGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
31238958 AAAAGGGCTT-TGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
31238978 ATTAAAGAGG
Statistics
Matches: 134, Mismatches: 15, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
25 30 0.22
26 104 0.78
ACGTcount: A:0.27, C:0.21, G:0.22, T:0.30
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATTG
Found at i:31239181 original size:42 final size:42
Alignment explanation
Indices: 31239122--31239213 Score: 166
Period size: 42 Copynumber: 2.2 Consensus size: 42
31239112 TAGTCTCCCC
*
31239122 AAATGGGCTTGCATACATTCATTGGTATTTCATGTGATATTG
1 AAATGGGCTTGCATACATTCATTGATATTTCATGTGATATTG
*
31239164 AAATGGGCTTGCATACATTCATTGATATTTCATGTGTTATTG
1 AAATGGGCTTGCATACATTCATTGATATTTCATGTGATATTG
31239206 AAATGGGC
1 AAATGGGC
31239214 CTATGGGCCA
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
42 48 1.00
ACGTcount: A:0.27, C:0.12, G:0.22, T:0.39
Consensus pattern (42 bp):
AAATGGGCTTGCATACATTCATTGATATTTCATGTGATATTG
Found at i:31247052 original size:45 final size:45
Alignment explanation
Indices: 31246988--31247167 Score: 290
Period size: 45 Copynumber: 4.0 Consensus size: 45
31246978 ATTATCGTGC
*
31246988 GACACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGA
1 GACACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCAGTGA
*
31247033 GACACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGA
1 GACACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCAGTGA
* * *
31247078 GATACTATTTGGGCCTTTGAGCCTAGCAGGCTACAATGCCAGTGA
1 GACACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCAGTGA
*
31247123 GATACTATTCGGG-CTTTCGAGCCTAGCAGGCTATAATGCCAGTGA
1 GACACTATTCGGGCCTTT-GAGCCTAGCAGGCTATAATGCCAGTGA
31247168 AAGGATATCG
Statistics
Matches: 128, Mismatches: 6, Indels: 2
0.94 0.04 0.01
Matches are distributed among these distances:
44 4 0.03
45 124 0.97
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (45 bp):
GACACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCAGTGA
Found at i:31249513 original size:39 final size:39
Alignment explanation
Indices: 31249456--31249544 Score: 135
Period size: 39 Copynumber: 2.3 Consensus size: 39
31249446 TATAATTCCA
*
31249456 ACCTTAAGTCCGGTTATAATTCCAGAACATAGCCTGCGG
1 ACCTTAAGTCCGGATATAATTCCAGAACATAGCCTGCGG
* *
31249495 ACCTTAAGTCCGGATATAATTCCAGCACATAGTCTGCGG
1 ACCTTAAGTCCGGATATAATTCCAGAACATAGCCTGCGG
31249534 A-CTCTAAGTCC
1 ACCT-TAAGTCC
31249545 AGGTAAACAT
Statistics
Matches: 46, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
38 2 0.04
39 44 0.96
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.26
Consensus pattern (39 bp):
ACCTTAAGTCCGGATATAATTCCAGAACATAGCCTGCGG
Found at i:31258715 original size:39 final size:39
Alignment explanation
Indices: 31258662--31258824 Score: 195
Period size: 39 Copynumber: 4.2 Consensus size: 39
31258652 GGACTTTAGC
* * * *
31258662 CCGGACATATTTCCAGCACGTAGCCTGCTGACCTTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCAGACCTTAAGT
* **
31258701 CCGGTTATAATTCCAGCACATAGCCTGCAGACCTTAAAA
1 CCGGATATAATTCCAGCACATAGCCTGCAGACCTTAAGT
*
31258740 CCGGATATAATTCCAGCACATAGCCTGCGGA-CTCTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCAGACCT-TAAGT
* **
31258779 CTGGATATAATTCCAGCACATAGCCTGC-GGGCTCTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCAGACCT-TAAGT
31258818 CCGGATA
1 CCGGATA
31258825 AACATCACTG
Statistics
Matches: 108, Mismatches: 14, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
38 3 0.03
39 105 0.97
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.24
Consensus pattern (39 bp):
CCGGATATAATTCCAGCACATAGCCTGCAGACCTTAAGT
Found at i:31258824 original size:78 final size:78
Alignment explanation
Indices: 31258662--31258806 Score: 220
Period size: 78 Copynumber: 1.9 Consensus size: 78
31258652 GGACTTTAGC
* * * * *
31258662 CCGGACATATTTCCAGCACGTAGCCTGCTGACCTTAAGTCCGGTTATAATTCCAGCACATAGCCT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCTTAAGTCCGGATATAATTCCAGCACATAGCCT
31258727 GCAGACCTTAAAA
66 GCAGACCTTAAAA
*
31258740 CCGGATATAATTCCAGCACATAGCCTGCGGA-CTCTAAGTCTGGATATAATTCCAGCACATAGCC
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCT-TAAGTCCGGATATAATTCCAGCACATAGCC
31258804 TGC
65 TGC
31258807 GGGCTCTAAG
Statistics
Matches: 60, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
77 2 0.03
78 58 0.97
ACGTcount: A:0.28, C:0.29, G:0.19, T:0.24
Consensus pattern (78 bp):
CCGGATATAATTCCAGCACATAGCCTGCGGACCTTAAGTCCGGATATAATTCCAGCACATAGCCT
GCAGACCTTAAAA
Found at i:31270636 original size:54 final size:53
Alignment explanation
Indices: 31270507--31270752 Score: 240
Period size: 54 Copynumber: 4.7 Consensus size: 53
31270497 ATTAGGGTTT
* * *
31270507 AAGGATACCATGTAAGCCCATG-CTAAGGCATGACAATTGGTAAGGTTTC-TAAGGC
1 AAGGATACCATGTAAGACCATGTC-AAGACATGGC-ATTGGTAA-G-TTCATAAGGC
* * *
31270562 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTT-C-ATAAGGC
* * *
31270617 AAAGG-T-CCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGC
1 -AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTTCATAAGGC
*
31270669 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTT--TCAA---
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTTCAT-AAGGC
* * *
31270718 AAGGATACCATGTAAGACCAAGACAAGTCATGGCA
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCA
31270753 ATCGTAAGGT
Statistics
Matches: 164, Mismatches: 19, Indels: 22
0.80 0.09 0.11
Matches are distributed among these distances:
49 32 0.20
51 5 0.03
52 12 0.07
53 37 0.23
54 40 0.24
55 33 0.20
56 5 0.03
ACGTcount: A:0.37, C:0.17, G:0.24, T:0.22
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTTCATAAGGC
Found at i:31270702 original size:107 final size:109
Alignment explanation
Indices: 31270514--31270713 Score: 298
Period size: 107 Copynumber: 1.9 Consensus size: 109
31270504 TTTAAGGATA
* * *
31270514 CCATGTAAGCCCATGCTAAGGCATGACAATTGGTAAGGTTTCTAAGGCAAGGAAATCATGTAAGA
1 CCATGTAAGACCATGCCAAGGCATGACAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGA
*
31270579 CCATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGT
66 CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGT
* * *
31270623 CCATGTAAGACCATGCCAAGGCATGGC-ATTGGTGA-G-TTCATAAGGCAAGGATACCATGTAAG
1 CCATGTAAGACCATGCCAAGGCATGACAATTGGTAAGGTTTC-TAAGGCAAGGAAACCATGTAAG
*
31270685 ACCATGTCAAGACATGGCAATGGTAAGTT
65 ACCATGTCAAGACATGGCAATGATAAGTT
31270714 TCAAAAGGAT
Statistics
Matches: 82, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
106 3 0.04
107 48 0.59
108 7 0.09
109 24 0.29
ACGTcount: A:0.34, C:0.17, G:0.25, T:0.23
Consensus pattern (109 bp):
CCATGTAAGACCATGCCAAGGCATGACAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGA
CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGT
Found at i:31270973 original size:16 final size:16
Alignment explanation
Indices: 31270952--31270982 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
31270942 ATAAATTTGA
31270952 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
31270968 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
31270983 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:31308144 original size:49 final size:49
Alignment explanation
Indices: 31308063--31308328 Score: 469
Period size: 49 Copynumber: 5.4 Consensus size: 49
31308053 TTTACCACAT
* * *
31308063 ATATATATACACTTTCATATTCGTCACGTCGGCCATTAGGCCTTATCAC
1 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
*
31308112 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
31308161 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
31308210 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
*
31308259 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAC
1 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT--CAC
31308310 ATATATATACACTTTCACA
1 ATATATATACACTTTCACA
31308329 CTTGCACATT
Statistics
Matches: 208, Mismatches: 7, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
49 187 0.90
51 21 0.10
ACGTcount: A:0.31, C:0.27, G:0.08, T:0.34
Consensus pattern (49 bp):
ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
Found at i:31326567 original size:24 final size:23
Alignment explanation
Indices: 31326485--31326606 Score: 82
Period size: 24 Copynumber: 4.9 Consensus size: 23
31326475 GTGGACTCAC
** *
31326485 CTCAGCTCGTATGAGCTTACCAATA
1 CTCAGCTCGTA-GAGCTTA-CTGTT
31326510 CATCAGCTCGTAAGAGCTTACTGTT
1 C-TCAGCTCGT-AGAGCTTACTGTT
*
31326535 CTCAACTCGTCAGAGCTTACTGTT
1 CTCAGCTCGT-AGAGCTTACTGTT
* * * *
31326559 TTTAGCTCGATAGAGCTTACTATC
1 CTCAGCTCG-TAGAGCTTACTGTT
*
31326583 CATCAGCTCAGGAGGAGCTTACTG
1 C-TCAGCTC-GTA-GAGCTTACTG
31326607 ATCATAGCTC
Statistics
Matches: 77, Mismatches: 14, Indels: 11
0.75 0.14 0.11
Matches are distributed among these distances:
24 38 0.49
25 12 0.16
26 26 0.34
27 1 0.01
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.30
Consensus pattern (23 bp):
CTCAGCTCGTAGAGCTTACTGTT
Found at i:31326798 original size:20 final size:20
Alignment explanation
Indices: 31326769--31326806 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
31326759 TGAATTATTG
*
31326769 TTATATGGATGAAGTACTGT
1 TTATACGGATGAAGTACTGT
*
31326789 TTATACGGATGAGGTACT
1 TTATACGGATGAAGTACT
31326807 ATTATTGAAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.29, C:0.08, G:0.26, T:0.37
Consensus pattern (20 bp):
TTATACGGATGAAGTACTGT
Found at i:31331725 original size:10 final size:11
Alignment explanation
Indices: 31331696--31331724 Score: 58
Period size: 11 Copynumber: 2.6 Consensus size: 11
31331686 TGATTAAGTA
31331696 CGATTTTTGCT
1 CGATTTTTGCT
31331707 CGATTTTTGCT
1 CGATTTTTGCT
31331718 CGATTTT
1 CGATTTT
31331725 GATGTTTTTG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.10, C:0.17, G:0.17, T:0.55
Consensus pattern (11 bp):
CGATTTTTGCT
Found at i:31332163 original size:2 final size:2
Alignment explanation
Indices: 31332156--31332194 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
31332146 CTAATTTTGA
31332156 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
31332195 GATCAAGATA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:31335747 original size:27 final size:27
Alignment explanation
Indices: 31335717--31335818 Score: 123
Period size: 27 Copynumber: 3.8 Consensus size: 27
31335707 CCCTAATTGA
*
31335717 TAAAATGACTATTTTGCCCTTATGGGG
1 TAAAATGACTATTTTGCCCTTATGAGG
* * *
31335744 TAAAATGACTGTTTTTCCCTTGTGAGG
1 TAAAATGACTATTTTGCCCTTATGAGG
* * * *
31335771 TAAAATGATTGTTTTTCCCTTATGTGG
1 TAAAATGACTATTTTGCCCTTATGAGG
*
31335798 TAAAATAACTATTTTGCCCTT
1 TAAAATGACTATTTTGCCCTT
31335819 TTATGGTAAG
Statistics
Matches: 64, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 64 1.00
ACGTcount: A:0.25, C:0.15, G:0.18, T:0.42
Consensus pattern (27 bp):
TAAAATGACTATTTTGCCCTTATGAGG
Found at i:31335827 original size:54 final size:54
Alignment explanation
Indices: 31335717--31335850 Score: 144
Period size: 54 Copynumber: 2.5 Consensus size: 54
31335707 CCCTAATTGA
* * * * * * *
31335717 TAAAATGACTATTTTGCCCTTATGGGGTAAAATGACTGTTTTTCCCTTGTGAGG
1 TAAAATGATTGTTTTACCCTTATGTGGTAAAATAACTATTTTGCCCTTGTGAGG
* *
31335771 TAAAATGATTGTTTTTCCCTTATGTGGTAAAATAACTATTTTGCCCTT-TTATGG
1 TAAAATGATTGTTTTACCCTTATGTGGTAAAATAACTATTTTGCCCTTGTGA-GG
* * *
31335825 TAAGATAATTGTTTTACCCCTATGTG
1 TAAAATGATTGTTTTACCCTTATGTG
31335851 ATGTATGTTT
Statistics
Matches: 67, Mismatches: 12, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
53 2 0.03
54 65 0.97
ACGTcount: A:0.25, C:0.14, G:0.18, T:0.43
Consensus pattern (54 bp):
TAAAATGATTGTTTTACCCTTATGTGGTAAAATAACTATTTTGCCCTTGTGAGG
Found at i:31335839 original size:27 final size:27
Alignment explanation
Indices: 31335728--31335839 Score: 91
Period size: 27 Copynumber: 4.1 Consensus size: 27
31335718 AAAATGACTA
** * *
31335728 TTTTGCCCTTATGGGGTAAAATGACTG
1 TTTTGCCCTTATATGGTAAAATAATTG
* * *
31335755 TTTTTCCCTTGTGA-GGTAAAATGATTG
1 TTTTGCCCTTAT-ATGGTAAAATAATTG
* * * *
31335782 TTTTTCCCTTATGTGGTAAAATAACTA
1 TTTTGCCCTTATATGGTAAAATAATTG
* *
31335809 TTTTGCCCTTTTATGGTAAGATAATTG
1 TTTTGCCCTTATATGGTAAAATAATTG
31335836 TTTT
1 TTTT
31335840 ACCCCTATGT
Statistics
Matches: 68, Mismatches: 15, Indels: 4
0.78 0.17 0.05
Matches are distributed among these distances:
27 68 1.00
ACGTcount: A:0.23, C:0.12, G:0.19, T:0.46
Consensus pattern (27 bp):
TTTTGCCCTTATATGGTAAAATAATTG
Found at i:31348051 original size:29 final size:29
Alignment explanation
Indices: 31348017--31348177 Score: 207
Period size: 29 Copynumber: 5.6 Consensus size: 29
31348007 TACTCGATTT
** * *
31348017 CGCACACTTAGTGCCATGCGATTT-AAGCC
1 CGCACACTTAGTGCCAT-ATATTTCCAGCA
* *** * *
31348046 CGCACACATAGTGCCATACCCTTCGAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
31348075 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
31348104 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
31348133 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
31348162 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
31348178 ATCTCGTCAC
Statistics
Matches: 116, Mismatches: 15, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
28 2 0.02
29 114 0.98
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.25
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:31356008 original size:29 final size:29
Alignment explanation
Indices: 31355977--31356077 Score: 157
Period size: 29 Copynumber: 3.5 Consensus size: 29
31355967 TTTTCAGCTT
* * * *
31355977 GCACACATAGTGTCATATTTTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAC
*
31356006 GCACACTTAGTGCCTTATATTTCCAGCAC
1 GCACACTTAGTGCCATATATTTCCAGCAC
31356035 GCACACTTAGTGCCATATATTTCCAGCAC
1 GCACACTTAGTGCCATATATTTCCAGCAC
31356064 GCACACTTAGTGCC
1 GCACACTTAGTGCC
31356078 GATCTCGTCA
Statistics
Matches: 66, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
29 66 1.00
ACGTcount: A:0.26, C:0.30, G:0.15, T:0.30
Consensus pattern (29 bp):
GCACACTTAGTGCCATATATTTCCAGCAC
Found at i:31360986 original size:27 final size:28
Alignment explanation
Indices: 31360956--31361025 Score: 88
Period size: 27 Copynumber: 2.5 Consensus size: 28
31360946 ATAGTGAATC
*
31360956 CGCACACTTAGTGCTATAAAATC-AGCT
1 CGCACACTTAGTGCTATAAAATCAAACT
* * *
31360983 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATAAAATCAAACT
*
31361011 CGCACAGTTAGTGCT
1 CGCACACTTAGTGCT
31361026 GTACAATTTT
Statistics
Matches: 36, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
27 21 0.58
28 15 0.42
ACGTcount: A:0.33, C:0.24, G:0.16, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATAAAATCAAACT
Found at i:31361097 original size:42 final size:42
Alignment explanation
Indices: 31361033--31361139 Score: 196
Period size: 42 Copynumber: 2.5 Consensus size: 42
31361023 GCTGTACAAT
* *
31361033 TTTAAACCCGCACACGTAGTGCCAATCTTGTCACCGTGTCCA
1 TTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
31361075 TTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
1 TTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
31361117 TTTATACCCGCACACTTAGTGCC
1 TTTATACCCGCACACTTAGTGCC
31361140 GAGACCAATA
Statistics
Matches: 63, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
42 63 1.00
ACGTcount: A:0.22, C:0.34, G:0.15, T:0.29
Consensus pattern (42 bp):
TTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
Found at i:31364391 original size:57 final size:57
Alignment explanation
Indices: 31364303--31364417 Score: 203
Period size: 57 Copynumber: 2.0 Consensus size: 57
31364293 ATTACAGAGT
31364303 ATATATGACATGTATAGCTAGACTATCACACGCTACGTTAGTCCTAGAATTGACTAA
1 ATATATGACATGTATAGCTAGACTATCACACGCTACGTTAGTCCTAGAATTGACTAA
* * *
31364360 ATATATGGCATGTATAGCTAGACTATCACACGCTATGTTAGTCCTTGAATTGACTAA
1 ATATATGACATGTATAGCTAGACTATCACACGCTACGTTAGTCCTAGAATTGACTAA
31364417 A
1 A
31364418 CCGTAGCTCT
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
57 55 1.00
ACGTcount: A:0.34, C:0.18, G:0.17, T:0.31
Consensus pattern (57 bp):
ATATATGACATGTATAGCTAGACTATCACACGCTACGTTAGTCCTAGAATTGACTAA
Found at i:31382558 original size:27 final size:27
Alignment explanation
Indices: 31382498--31382559 Score: 72
Period size: 27 Copynumber: 2.3 Consensus size: 27
31382488 CATACATAAC
* * **
31382498 ATAGGGGTATATCAGTCATTTTACCTT
1 ATAGGGGTATAACAGTCATTTCACAGT
31382525 ATAGGGGTATAACAGTCATTTCATCAGT
1 ATAGGGGTATAACAGTCATTTCA-CAGT
31382553 AT-GGGGT
1 ATAGGGGT
31382560 CCAAGTATAC
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
27 26 0.87
28 4 0.13
ACGTcount: A:0.27, C:0.13, G:0.24, T:0.35
Consensus pattern (27 bp):
ATAGGGGTATAACAGTCATTTCACAGT
Found at i:31385843 original size:206 final size:206
Alignment explanation
Indices: 31385482--31385863 Score: 629
Period size: 206 Copynumber: 1.9 Consensus size: 206
31385472 TACTGTTAGT
* * * ** *
31385482 CATAAAAATAGGAATTGATTTGTCTTTTTCCTAAGGCTATTAGTGGGCACATGGCAAACAATAAC
1 CATAAAAATAAGAACTGATTTGTCTCTTTCCTAAGGAAATTAGTAGGCACATGGCAAACAATAAC
*
31385547 TTTAGAAAAATCCAAACCTGCAATTCAATTTGATACAGACAATGATCATATTTGAATCAACATTT
66 TTTAGAAAAATCCAAACCTGCAATTCAATTTGATACAAACAATGATCATATTTGAATCAACATTT
* *
31385612 AAAAAATATTTTGAATCATATTTGAATAATTCAATGACTTACACAGATTCAAATGATTTAATAAA
131 AAAAAATATTTTGAATCAAATTTGAATAATTCAATGACATACACAGATTCAAATGATTTAATAAA
31385677 GATTGATAGGC
196 GATTGATAGGC
* * *
31385688 CATAAAAATAAGAACTGATTTGTCTCTTTCCTAAGGAAATTAGTATGCACATGGCAGACAATACC
1 CATAAAAATAAGAACTGATTTGTCTCTTTCCTAAGGAAATTAGTAGGCACATGGCAAACAATAAC
* *
31385753 TTTAGAAAAATCCAAACCTGCAATTCACTTTGATACAAACAATGATCATATTTGGATCAACATTT
66 TTTAGAAAAATCCAAACCTGCAATTCAATTTGATACAAACAATGATCATATTTGAATCAACATTT
*
31385818 AAAAAATGTTTTGAATCAAATTTGAATAATTCAATGACATACACAG
131 AAAAAATATTTTGAATCAAATTTGAATAATTCAATGACATACACAG
31385864 TTTTGAATAA
Statistics
Matches: 161, Mismatches: 15, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
206 161 1.00
ACGTcount: A:0.41, C:0.15, G:0.13, T:0.31
Consensus pattern (206 bp):
CATAAAAATAAGAACTGATTTGTCTCTTTCCTAAGGAAATTAGTAGGCACATGGCAAACAATAAC
TTTAGAAAAATCCAAACCTGCAATTCAATTTGATACAAACAATGATCATATTTGAATCAACATTT
AAAAAATATTTTGAATCAAATTTGAATAATTCAATGACATACACAGATTCAAATGATTTAATAAA
GATTGATAGGC
Found at i:31389558 original size:3 final size:3
Alignment explanation
Indices: 31389550--31389611 Score: 56
Period size: 3 Copynumber: 20.3 Consensus size: 3
31389540 GGGTTCAAAT
* *
31389550 TTA TTA TTA TT- TTA TTA TTA TTA TTA TTAA TTCA TAA TTA TTA TAAA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT-A TT-A TTA TTA TTA T-TA
*
31389597 ATA TTA TT- TTA TTA T
1 TTA TTA TTA TTA TTA T
31389612 AAAATAAATA
Statistics
Matches: 48, Mismatches: 7, Indels: 8
0.76 0.11 0.13
Matches are distributed among these distances:
2 4 0.08
3 38 0.79
4 6 0.12
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.61
Consensus pattern (3 bp):
TTA
Found at i:31389575 original size:20 final size:20
Alignment explanation
Indices: 31389550--31389593 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
31389540 GGGTTCAAAT
* * *
31389550 TTATTATTATTTTATTATTA
1 TTATTATTAATTCATAATTA
31389570 TTATTATTAATTCATAATTA
1 TTATTATTAATTCATAATTA
31389590 TTAT
1 TTAT
31389594 AAAATATTAT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.64
Consensus pattern (20 bp):
TTATTATTAATTCATAATTA
Found at i:31390624 original size:27 final size:26
Alignment explanation
Indices: 31390576--31390635 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
31390566 GCGAGGCTGC
*
31390576 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
31390603 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
31390629 CAGATAT
1 CAGATAT
31390636 ATATATATGT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:31391353 original size:26 final size:27
Alignment explanation
Indices: 31391324--31391377 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
31391314 TCACACAAGT
*
31391324 TAGTCATTT-ACGCACGAGGGGCAAAA
1 TAGTCATTTAACACACGAGGGGCAAAA
* *
31391350 TAGTCATTTAACACCCTAGGGGCAAAA
1 TAGTCATTTAACACACGAGGGGCAAAA
31391377 T
1 T
31391378 GTAATTTTAC
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
26 9 0.38
27 15 0.62
ACGTcount: A:0.35, C:0.20, G:0.22, T:0.22
Consensus pattern (27 bp):
TAGTCATTTAACACACGAGGGGCAAAA
Found at i:31391486 original size:80 final size:81
Alignment explanation
Indices: 31391395--31391575 Score: 231
Period size: 80 Copynumber: 2.2 Consensus size: 81
31391385 TACCCCACAA
* *** * * **
31391395 GGGTATCTCGGTAATTCTACCCTACAGGGGTATTTTGGTATTTCTACCCTACAAAGGTATTTCGG
1 GGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAATAATTCTACCCTACAAAGGTAGTTCAA
*
31391460 TAATT-TATGC-TACAG
66 TAATTCTA-CCTTACAG
* **
31391475 GGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAATAATTCTACCTTACAGGGGTAGTTCAA
1 GGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAATAATTCTACCCTACAAAGGTAGTTCAA
31391540 TAATTCTACCTTACAG
66 TAATTCTACCTTACAG
31391556 GGGTATTTCGGTAATTCTAC
1 GGGTATTTCGGTAATTCTAC
31391576 AAATTATCCA
Statistics
Matches: 87, Mismatches: 12, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
80 60 0.69
81 27 0.31
ACGTcount: A:0.25, C:0.19, G:0.20, T:0.36
Consensus pattern (81 bp):
GGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAATAATTCTACCCTACAAAGGTAGTTCAA
TAATTCTACCTTACAG
Found at i:31391547 original size:107 final size:107
Alignment explanation
Indices: 31391378--31391571 Score: 253
Period size: 107 Copynumber: 1.8 Consensus size: 107
31391368 GGGGCAAAAT
* ** * *** *
31391378 GTAATTTTACCCCACAAGGGTATCTCGGTAATTCTACCCTACAGGGGTATTTTGGTATTTCTACC
1 GTAATTCTACCCCACAAGGGTATCTCAATAATTCTACCCTACAGGGGTAGTTCAATAATTCTACC
31391443 CTACAAAGGTATTTCGGTAATTTATGCTACAGGGGTATTTCG
66 CTACAAAGGTATTTCGGTAATTTATGCTACAGGGGTATTTCG
* * * *
31391485 GTAATTCTACCCTACAGGGGTATTTCAATAATTCTACCTTACAGGGGTAGTTCAATAATTCTACC
1 GTAATTCTACCCCACAAGGGTATCTCAATAATTCTACCCTACAGGGGTAGTTCAATAATTCTACC
* **
31391550 TTACAGGGGTATTTCGGTAATT
66 CTACAAAGGTATTTCGGTAATT
31391572 CTACAAATTA
Statistics
Matches: 72, Mismatches: 15, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
107 72 1.00
ACGTcount: A:0.26, C:0.19, G:0.20, T:0.36
Consensus pattern (107 bp):
GTAATTCTACCCCACAAGGGTATCTCAATAATTCTACCCTACAGGGGTAGTTCAATAATTCTACC
CTACAAAGGTATTTCGGTAATTTATGCTACAGGGGTATTTCG
Found at i:31391572 original size:27 final size:27
Alignment explanation
Indices: 31391378--31391575 Score: 236
Period size: 27 Copynumber: 7.4 Consensus size: 27
31391368 GGGGCAAAAT
* * * *
31391378 GTAATTTTACCCCACAAGGGTATCTCG
1 GTAATTCTACCCTACAGGGGTATTTCG
*
31391405 GTAATTCTACCCTACAGGGGTATTTTG
1 GTAATTCTACCCTACAGGGGTATTTCG
* **
31391432 GTATTTCTACCCTACAAAGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCG
**
31391459 GTAATT-TATGCTACAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCG
*
31391485 GTAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCG
* * * *
31391512 ATAATTCTACCTTACAGGGGTAGTTCA
1 GTAATTCTACCCTACAGGGGTATTTCG
* *
31391539 ATAATTCTACCTTACAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCG
31391566 GTAATTCTAC
1 GTAATTCTAC
31391576 AAATTATCCA
Statistics
Matches: 147, Mismatches: 23, Indels: 2
0.85 0.13 0.01
Matches are distributed among these distances:
26 22 0.15
27 125 0.85
ACGTcount: A:0.26, C:0.20, G:0.19, T:0.35
Consensus pattern (27 bp):
GTAATTCTACCCTACAGGGGTATTTCG
Found at i:31397815 original size:27 final size:26
Alignment explanation
Indices: 31397767--31397818 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
31397757 TAATATGTCC
31397767 CAGATATTGTGACGAAGACACCAGAA
1 CAGATATTGTGACGAAGACACCAGAA
* * *
31397793 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGACACCAGA
31397819 TTGCAACGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.37, C:0.21, G:0.27, T:0.15
Consensus pattern (26 bp):
CAGATATTGTGACGAAGACACCAGAA
Found at i:31398488 original size:27 final size:27
Alignment explanation
Indices: 31398433--31398489 Score: 69
Period size: 27 Copynumber: 2.1 Consensus size: 27
31398423 TACGCATGAG
* **
31398433 GGGCAAAATAGTCATTTAACACCTTAA
1 GGGCAAAATAGTAATTTAACACCACAA
* *
31398460 GGGCAAAATGGTAATTTTACACCACAA
1 GGGCAAAATAGTAATTTAACACCACAA
31398487 GGG
1 GGG
31398490 TATCTCGATA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.39, C:0.18, G:0.21, T:0.23
Consensus pattern (27 bp):
GGGCAAAATAGTAATTTAACACCACAA
Found at i:31398517 original size:27 final size:27
Alignment explanation
Indices: 31398469--31398641 Score: 213
Period size: 27 Copynumber: 6.4 Consensus size: 27
31398459 AGGGCAAAAT
* * * *
31398469 GGTAATTTTACACCACAAGGGTATCTC
1 GGTAATTCTACTCTACAAGGGTATTTC
* *
31398496 GATAATTCTACTCTACAGGGGTATTTC
1 GGTAATTCTACTCTACAAGGGTATTTC
* * *
31398523 GGTATTTCTACCCTATAAGGGTATTTC
1 GGTAATTCTACTCTACAAGGGTATTTC
*
31398550 GGTAATTCTA-TCCTACAGGGGTATTTC
1 GGTAATTCTACT-CTACAAGGGTATTTC
* *
31398577 GGTAATTCTACCCTACAAGGGTATTTT
1 GGTAATTCTACTCTACAAGGGTATTTC
*
31398604 GGTAATTCTACTTTACAAGGGTATTTC
1 GGTAATTCTACTCTACAAGGGTATTTC
31398631 GGTAATTCTAC
1 GGTAATTCTAC
31398642 AACTTATCCA
Statistics
Matches: 123, Mismatches: 21, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
27 123 1.00
ACGTcount: A:0.25, C:0.18, G:0.19, T:0.37
Consensus pattern (27 bp):
GGTAATTCTACTCTACAAGGGTATTTC
Found at i:31398567 original size:54 final size:54
Alignment explanation
Indices: 31398469--31398641 Score: 242
Period size: 54 Copynumber: 3.2 Consensus size: 54
31398459 AGGGCAAAAT
* * *
31398469 GGTAATTTTACACC-ACAAGGGTATCTCGATAATTCTACTCTACAGGGGTATTTC
1 GGTAATTCTAC-CCTACAAGGGTATTTCGGTAATTCTACTCTACAGGGGTATTTC
* *
31398523 GGTATTTCTACCCTATAAGGGTATTTCGGTAATTCTA-TCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACT-CTACAGGGGTATTTC
* * *
31398577 GGTAATTCTACCCTACAAGGGTATTTTGGTAATTCTACTTTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACTCTACAGGGGTATTTC
31398631 GGTAATTCTAC
1 GGTAATTCTAC
31398642 AACTTATCCA
Statistics
Matches: 106, Mismatches: 10, Indels: 6
0.87 0.08 0.05
Matches are distributed among these distances:
53 3 0.03
54 102 0.96
55 1 0.01
ACGTcount: A:0.25, C:0.18, G:0.19, T:0.37
Consensus pattern (54 bp):
GGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACTCTACAGGGGTATTTC
Found at i:31405543 original size:10 final size:10
Alignment explanation
Indices: 31405521--31405572 Score: 52
Period size: 10 Copynumber: 5.1 Consensus size: 10
31405511 AAACCTGTCG
*
31405521 AAAA-TAATA
1 AAAATTAATT
*
31405530 AAAATTAATC
1 AAAATTAATT
31405540 AAAATTAATTAT
1 AAAATTAA-T-T
31405552 AAAATTAATT
1 AAAATTAATT
*
31405562 AAAATTCATT
1 AAAATTAATT
31405572 A
1 A
31405573 TGTTAGTAAT
Statistics
Matches: 37, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
9 4 0.11
10 23 0.62
11 2 0.05
12 8 0.22
ACGTcount: A:0.62, C:0.04, G:0.00, T:0.35
Consensus pattern (10 bp):
AAAATTAATT
Found at i:31405557 original size:22 final size:22
Alignment explanation
Indices: 31405530--31405573 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
31405520 GAAAATAATA
31405530 AAAATTAATCAAAATTAATTAT
1 AAAATTAATCAAAATTAATTAT
* *
31405552 AAAATTAATTAAAATTCATTAT
1 AAAATTAATCAAAATTAATTAT
31405574 GTTAGTAATT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.57, C:0.05, G:0.00, T:0.39
Consensus pattern (22 bp):
AAAATTAATCAAAATTAATTAT
Found at i:31410786 original size:31 final size:31
Alignment explanation
Indices: 31410751--31410814 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
31410741 CCTTTTCATA
31410751 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
** *
31410782 TTTCATATTTCATATTACTGGTCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
31410813 TT
1 TT
31410815 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.23, C:0.23, G:0.14, T:0.39
Consensus pattern (31 bp):
TTTCATATTTCATAACACTGGGCCGAAGCCT
Found at i:31411125 original size:25 final size:25
Alignment explanation
Indices: 31411036--31411117 Score: 130
Period size: 25 Copynumber: 3.3 Consensus size: 25
31411026 CTATTTTAAT
31411036 AACTGGGGC-AAAGCCCTTTTGATA
1 AACTGGGGCAAAAGCCCTTTTGATA
*
31411060 AACTGGGGCAAAAGCCCTTTTAATA
1 AACTGGGGCAAAAGCCCTTTTGATA
*
31411085 AACTGGGGCAAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAAGCCCTTTT-GATA
31411111 AACTGGG
1 AACTGGG
31411118 ACATAGCCTT
Statistics
Matches: 53, Mismatches: 3, Indels: 2
0.91 0.05 0.03
Matches are distributed among these distances:
24 9 0.17
25 35 0.66
26 9 0.17
ACGTcount: A:0.30, C:0.21, G:0.26, T:0.23
Consensus pattern (25 bp):
AACTGGGGCAAAAGCCCTTTTGATA
Found at i:31411208 original size:40 final size:39
Alignment explanation
Indices: 31411164--31411242 Score: 90
Period size: 40 Copynumber: 2.0 Consensus size: 39
31411154 CCCAACCCAA
*
31411164 TGCATTATGAATAC-ATCATGTGCATATCATA-CATATCATG
1 TGCA-TAT-AATACAATCATGTGCAAATCATATCA-ATCATG
*
31411204 TGCATATCATACATATCATGTGCAAATCATATCAATCAT
1 TGCATATAATACA-ATCATGTGCAAATCATATCAATCAT
31411243 TTATATCAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
38 4 0.12
39 3 0.09
40 25 0.74
41 2 0.06
ACGTcount: A:0.37, C:0.19, G:0.10, T:0.34
Consensus pattern (39 bp):
TGCATATAATACAATCATGTGCAAATCATATCAATCATG
Found at i:31411209 original size:11 final size:11
Alignment explanation
Indices: 31411178--31411233 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
31411168 TTATGAATAC
31411178 ATCATGTGCAT
1 ATCATGTGCAT
*
31411189 ATCA--TACAT
1 ATCATGTGCAT
31411198 ATCATGTGCAT
1 ATCATGTGCAT
*
31411209 ATCA--TACAT
1 ATCATGTGCAT
*
31411218 ATCATGTGCAA
1 ATCATGTGCAT
31411229 ATCAT
1 ATCAT
31411234 ATCAATCATT
Statistics
Matches: 36, Mismatches: 5, Indels: 8
0.73 0.10 0.16
Matches are distributed among these distances:
9 16 0.44
11 20 0.56
ACGTcount: A:0.36, C:0.20, G:0.11, T:0.34
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:31411242 original size:20 final size:20
Alignment explanation
Indices: 31411178--31411234 Score: 105
Period size: 20 Copynumber: 2.9 Consensus size: 20
31411168 TTATGAATAC
31411178 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
31411198 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
31411218 ATCATGTGCAAATCATA
1 ATCATGTGCATATCATA
31411235 TCAATCATTT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.37, C:0.19, G:0.11, T:0.33
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:31414103 original size:40 final size:40
Alignment explanation
Indices: 31414024--31414229 Score: 308
Period size: 40 Copynumber: 5.2 Consensus size: 40
31414014 AACCCAAGTA
* * * *
31414024 CCTTCGGAATTTAG-CCGGATATAG-CAACTCGCACGAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
*
31414063 CCTTCGGGACTTAGCCCGGACATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
* *
31414103 CCTTCGGGGCTTAGCCCGGATATAGTCACTAGCACATATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
31414143 CCTTCGGGACTTAGCCCGGATATAATCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
31414183 CCTTCGGGACTTAGCCCGGATATAATCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
31414223 CCTTCGG
1 CCTTCGG
31414230 ATCTTAGTCC
Statistics
Matches: 154, Mismatches: 11, Indels: 3
0.92 0.07 0.02
Matches are distributed among these distances:
39 12 0.08
40 141 0.92
41 1 0.01
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:31421267 original size:80 final size:79
Alignment explanation
Indices: 31421105--31421271 Score: 187
Period size: 80 Copynumber: 2.1 Consensus size: 79
31421095 AAATTGAATG
*
31421105 ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCAA
1 ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCAA
*
31421170 ATGTGCTAGTGGCT
66 ATGTGCTAGTGACT
* * * * *
31421184 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGATATTCTATCTGGGCTAAGACCCGAAGG
1 ATATCCGGGCTAAG-CCCGAAGACAATT-ATGCTG-GAAATTATATCCGGGCTAAGACCCGAAGG
** *
31421247 CATTTGTGC-ACGTGATT
63 CAAATGTGCTA-GTGACT
31421264 ATATCCGG
1 ATATCCGG
31421272 TTATATTCCG
Statistics
Matches: 74, Mismatches: 10, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
79 19 0.26
80 55 0.74
ACGTcount: A:0.28, C:0.22, G:0.27, T:0.24
Consensus pattern (79 bp):
ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCAA
ATGTGCTAGTGACT
Found at i:31425326 original size:31 final size:31
Alignment explanation
Indices: 31425284--31425347 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
31425274 CCTTTTCATA
*
31425284 TTTCATTTTTCATAACACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
**
31425315 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
31425346 TT
1 TT
31425348 ACTGTAAATG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.22, C:0.23, G:0.16, T:0.39
Consensus pattern (31 bp):
TTTCATATTTCATAACACTGGGCCGAAGCCT
Found at i:31425612 original size:25 final size:24
Alignment explanation
Indices: 31425562--31425663 Score: 143
Period size: 25 Copynumber: 4.2 Consensus size: 24
31425552 GCCTAGCCTA
31425562 TTTTAAT-AACTGGGGCAAAGCCC
1 TTTTAATAAACTGGGGCAAAGCCC
*
31425585 TTTTGATAAACTGGGGCAAAAGCCC
1 TTTTAATAAACTGGGGC-AAAGCCC
31425610 TTTTAATAAACTGGGGCAAAAGCCC
1 TTTTAATAAACTGGGGC-AAAGCCC
* *
31425635 TTTTCAGTAAACTGGGGCATAGCCC
1 TTTT-AATAAACTGGGGCAAAGCCC
31425660 TTTT
1 TTTT
31425664 TGCACTTCCT
Statistics
Matches: 72, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
23 6 0.08
24 9 0.12
25 45 0.62
26 12 0.17
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.28
Consensus pattern (24 bp):
TTTTAATAAACTGGGGCAAAGCCC
Found at i:31425734 original size:20 final size:20
Alignment explanation
Indices: 31425711--31425777 Score: 109
Period size: 20 Copynumber: 3.4 Consensus size: 20
31425701 TTATGAATAC
31425711 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
31425731 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
31425751 ATTATGTGCATATCATATCA-
1 ATCATGTGCATATCATA-CAT
31425771 ATCATGT
1 ATCATGT
31425778 ATATCAAATC
Statistics
Matches: 44, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
20 42 0.95
21 2 0.05
ACGTcount: A:0.34, C:0.18, G:0.10, T:0.37
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:31425741 original size:40 final size:39
Alignment explanation
Indices: 31425697--31425777 Score: 94
Period size: 40 Copynumber: 2.0 Consensus size: 39
31425687 CCCAACCCAA
31425697 TGCATTATGAATAC-ATCATGTGCATATCATA-CATATCATG
1 TGCA-TAT-AATACAATCATGTGCATATCATATCA-ATCATG
* *
31425737 TGCATATCATACATATTATGTGCATATCATATCAATCATG
1 TGCATATAATACA-ATCATGTGCATATCATATCAATCATG
31425777 T
1 T
31425778 ATATCAAATC
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
38 4 0.11
39 3 0.08
40 27 0.75
41 2 0.06
ACGTcount: A:0.35, C:0.17, G:0.11, T:0.37
Consensus pattern (39 bp):
TGCATATAATACAATCATGTGCATATCATATCAATCATG
Found at i:31425742 original size:11 final size:11
Alignment explanation
Indices: 31425711--31425766 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
31425701 TTATGAATAC
31425711 ATCATGTGCAT
1 ATCATGTGCAT
*
31425722 ATCA--TACAT
1 ATCATGTGCAT
31425731 ATCATGTGCAT
1 ATCATGTGCAT
*
31425742 ATCA--TACAT
1 ATCATGTGCAT
*
31425751 ATTATGTGCAT
1 ATCATGTGCAT
31425762 ATCAT
1 ATCAT
31425767 ATCAATCATG
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.34, C:0.18, G:0.11, T:0.38
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:31428224 original size:37 final size:37
Alignment explanation
Indices: 31428183--31428272 Score: 144
Period size: 37 Copynumber: 2.4 Consensus size: 37
31428173 AACCTTTAGT
* * *
31428183 TCGGGGCTTACCCGGACAAAATCTCCACCCGTGGTCA
1 TCGGGTCTTACCCGGACAAAATCTCCACACGTAGTCA
*
31428220 TCGGGTCTTACCCGGACATAATCTCCACACGTAGTCA
1 TCGGGTCTTACCCGGACAAAATCTCCACACGTAGTCA
31428257 TCGGGTCTTACCCGGA
1 TCGGGTCTTACCCGGA
31428273 TATTAGTACA
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 49 1.00
ACGTcount: A:0.21, C:0.33, G:0.23, T:0.22
Consensus pattern (37 bp):
TCGGGTCTTACCCGGACAAAATCTCCACACGTAGTCA
Found at i:31429763 original size:47 final size:47
Alignment explanation
Indices: 31429694--31430506 Score: 1322
Period size: 47 Copynumber: 17.3 Consensus size: 47
31429684 CCCTTCGGGA
* * * * *
31429694 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
31429741 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
31429788 CTTATCACATATATGCACTTTCACATTCATCACATGGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
31429835 CTTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * * *
31429882 CTTATCTCATATATGCACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
31429929 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
31429976 CTTGTCACATATATACACTTTCACATTCATCACATCGG-CATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
31430022 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
31430069 CTTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * * *
31430116 CTTATCTCATATATGCACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
31430163 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
31430210 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTTGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
31430257 CTTATCACATATATACACTTCCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
31430304 CTTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGCC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * * *
31430351 CTTATCTCATATATGCACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
31430398 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
31430445 CTTATCACATATATGCACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
31430492 CTTATCACATATATA
1 CTTATCACATATATA
31430507 TATCTCATAC
Statistics
Matches: 711, Mismatches: 54, Indels: 2
0.93 0.07 0.00
Matches are distributed among these distances:
46 45 0.06
47 666 0.94
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:31429772 original size:25 final size:25
Alignment explanation
Indices: 31429744--31429822 Score: 85
Period size: 25 Copynumber: 3.3 Consensus size: 25
31429734 ACTCGGCCTT
*
31429744 ATCACATATATACACTTTCACATTC
1 ATCACATATATGCACTTTCACATTC
* * *
31429769 ATCACAT-T-GGC-CATTCGACCTT-
1 ATCACATATATGCACTTTC-ACATTC
31429791 ATCACATATATGCACTTTCACATTC
1 ATCACATATATGCACTTTCACATTC
31429816 ATCACAT
1 ATCACAT
31429823 GGGCCATTAG
Statistics
Matches: 42, Mismatches: 7, Indels: 10
0.71 0.12 0.17
Matches are distributed among these distances:
22 11 0.26
23 6 0.14
24 7 0.17
25 18 0.43
ACGTcount: A:0.32, C:0.29, G:0.05, T:0.34
Consensus pattern (25 bp):
ATCACATATATGCACTTTCACATTC
Found at i:31430407 original size:22 final size:22
Alignment explanation
Indices: 31430379--31430501 Score: 61
Period size: 22 Copynumber: 5.3 Consensus size: 22
31430369 TTTCACATTC
31430379 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
** * * *
31430401 ATCACATATATACACTTTC-ACATT
1 ATCACAT-T-GGC-CATTCGGCCTT
* *
31430425 CATCACATCGGCCATTAGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
* * * *
31430448 ATCACATATATGCACTTTC-ACATT
1 ATCACAT-T-GGC-CATTCGGCCTT
31430472 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
31430495 ATCACAT
1 ATCACAT
31430502 ATATATATCT
Statistics
Matches: 69, Mismatches: 22, Indels: 20
0.62 0.20 0.18
Matches are distributed among these distances:
22 28 0.41
23 10 0.14
24 10 0.14
25 21 0.30
ACGTcount: A:0.27, C:0.30, G:0.11, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:31433932 original size:43 final size:43
Alignment explanation
Indices: 31433822--31433933 Score: 136
Period size: 43 Copynumber: 2.6 Consensus size: 43
31433812 TAAATGTGAT
* *
31433822 GAAATGGATTTAGCCTGGATGGGTAATCCATTGATCTTAGTATG
1 GAAA-GGATTTAGCCTGGATGGGTAACCCATTGATCTTAGTATA
* **
31433866 GAATGGATTTAGCCCAGATGGGTAACCCATTGAT-TTCAGTATA
1 GAAAGGATTTAGCCTGGATGGGTAACCCATTGATCTT-AGTATA
* *
31433909 TAAAGGATTTAGCCTGGACGGGTAA
1 GAAAGGATTTAGCCTGGATGGGTAA
31433934 TCTTGAGTTG
Statistics
Matches: 57, Mismatches: 10, Indels: 3
0.81 0.14 0.04
Matches are distributed among these distances:
42 2 0.04
43 52 0.91
44 3 0.05
ACGTcount: A:0.29, C:0.13, G:0.27, T:0.30
Consensus pattern (43 bp):
GAAAGGATTTAGCCTGGATGGGTAACCCATTGATCTTAGTATA
Found at i:31439448 original size:28 final size:28
Alignment explanation
Indices: 31439379--31439479 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
31439369 GACAAGATTG
* * * *
31439379 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
31439409 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
31439437 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
31439466 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
31439480 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:31447372 original size:28 final size:28
Alignment explanation
Indices: 31447303--31447403 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
31447293 GACAAGATTG
* * * *
31447303 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
31447333 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
31447361 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
31447390 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
31447404 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:31464509 original size:42 final size:42
Alignment explanation
Indices: 31464462--31464568 Score: 196
Period size: 42 Copynumber: 2.5 Consensus size: 42
31464452 TATTGGTCTC
31464462 GGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGATT
1 GGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGATT
31464504 GGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGATT
1 GGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGATT
* *
31464546 GGCACTACGTGTGCGGGTTTAAA
1 GGCACTAAGTGTGCGGGTATAAA
31464569 ATTGTACAGC
Statistics
Matches: 63, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
42 63 1.00
ACGTcount: A:0.29, C:0.15, G:0.34, T:0.22
Consensus pattern (42 bp):
GGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGATT
Found at i:31464633 original size:27 final size:28
Alignment explanation
Indices: 31464576--31464645 Score: 97
Period size: 27 Copynumber: 2.5 Consensus size: 28
31464566 AAAATTGTAC
**
31464576 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
* *
31464604 AGCACTATGTGTGCG-AGCTGATTTTAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
31464631 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
31464646 GATTCACTAT
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
27 23 0.62
28 14 0.38
ACGTcount: A:0.27, C:0.14, G:0.26, T:0.33
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAAGCTGATTATAT
Found at i:31468372 original size:28 final size:28
Alignment explanation
Indices: 31468303--31468403 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
31468293 GACAAGATTG
* * * *
31468303 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
31468333 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
31468361 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
31468390 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
31468404 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:31476287 original size:28 final size:28
Alignment explanation
Indices: 31476218--31476318 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
31476208 GACAAGATTG
* * * *
31476218 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
31476248 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
31476276 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
31476305 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
31476319 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:31480332 original size:42 final size:42
Alignment explanation
Indices: 31480271--31480399 Score: 132
Period size: 42 Copynumber: 3.1 Consensus size: 42
31480261 ACAAAAGCAG
* * * *
31480271 ATAAGTGCTAAATAGAAACCTGTAAAGGTTGAACGGAAGCTC
1 ATAAGAGCTAAATGGAAACCTATAAAGGTTAAACGGAAGCTC
* * *
31480313 ATAAGAGCTGAATGGAAACCTATAAGGGTTAAACTGAAGCTC
1 ATAAGAGCTAAATGGAAACCTATAAAGGTTAAACGGAAGCTC
* * * * * * *
31480355 AAAAGACCTAAATGGAAACCCATTAGGGTTAAACAGAAACTC
1 ATAAGAGCTAAATGGAAACCTATAAAGGTTAAACGGAAGCTC
31480397 ATA
1 ATA
31480400 TGAGTTAACA
Statistics
Matches: 72, Mismatches: 15, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
42 72 1.00
ACGTcount: A:0.43, C:0.16, G:0.21, T:0.20
Consensus pattern (42 bp):
ATAAGAGCTAAATGGAAACCTATAAAGGTTAAACGGAAGCTC
Found at i:31490800 original size:42 final size:42
Alignment explanation
Indices: 31490740--31490839 Score: 155
Period size: 42 Copynumber: 2.4 Consensus size: 42
31490730 TCCTTACTCG
* * * *
31490740 TGTAACTCTCAAAGTTGCCTTACACGCTCGTGTGCTAGGCCT
1 TGTAACTCACTAACTTGCCTTACACGCTCGTGTGCCAGGCCT
31490782 TGTAACTCACTAACTTGCCTTACACGCTCGTGTGCCAGGCCT
1 TGTAACTCACTAACTTGCCTTACACGCTCGTGTGCCAGGCCT
*
31490824 TGTAACTCACTGACTT
1 TGTAACTCACTAACTT
31490840 AAACCTTAAG
Statistics
Matches: 53, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 53 1.00
ACGTcount: A:0.20, C:0.30, G:0.19, T:0.31
Consensus pattern (42 bp):
TGTAACTCACTAACTTGCCTTACACGCTCGTGTGCCAGGCCT
Found at i:31493701 original size:48 final size:47
Alignment explanation
Indices: 31493557--31493675 Score: 213
Period size: 46 Copynumber: 2.5 Consensus size: 47
31493547 ACGATGCCTC
31493557 ATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAACG
1 ATGCCGATGCCATGT-CCAGACATGGTCTTACACTGGCTCACATAACG
31493605 ATGCCGATGCCATG-CCAGACATGGTCTTACACTGGCTCACATAACG
1 ATGCCGATGCCATGTCCAGACATGGTCTTACACTGGCTCACATAACG
31493651 ATGCCGATGCCATGTCCGAGACATG
1 ATGCCGATGCCATGTCC-AGACATG
31493676 ATATTATACG
Statistics
Matches: 69, Mismatches: 0, Indels: 4
0.95 0.00 0.05
Matches are distributed among these distances:
46 46 0.67
47 2 0.03
48 21 0.30
ACGTcount: A:0.25, C:0.30, G:0.23, T:0.22
Consensus pattern (47 bp):
ATGCCGATGCCATGTCCAGACATGGTCTTACACTGGCTCACATAACG
Found at i:31496971 original size:20 final size:20
Alignment explanation
Indices: 31496948--31496987 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
31496938 AAAAGTTAGG
31496948 AAAAAACTCGTTAAG-TGCCA
1 AAAAAACTC-TTAAGTTGCCA
*
31496968 AAAAGACTCTTAAGTTGCCA
1 AAAAAACTCTTAAGTTGCCA
31496988 CAACGAATTG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 5 0.28
20 13 0.72
ACGTcount: A:0.42, C:0.20, G:0.15, T:0.23
Consensus pattern (20 bp):
AAAAAACTCTTAAGTTGCCA
Found at i:31496980 original size:19 final size:20
Alignment explanation
Indices: 31496948--31496987 Score: 57
Period size: 19 Copynumber: 2.0 Consensus size: 20
31496938 AAAAGTTAGG
31496948 AAAAAACTCGTTAAG-TGCC
1 AAAAAACTCGTTAAGTTGCC
31496967 AAAAAGACTC-TTAAGTTGCC
1 AAAAA-ACTCGTTAAGTTGCC
31496987 A
1 A
31496988 CAACGAATTG
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 10 0.53
20 9 0.47
ACGTcount: A:0.42, C:0.20, G:0.15, T:0.23
Consensus pattern (20 bp):
AAAAAACTCGTTAAGTTGCC
Found at i:31497635 original size:23 final size:23
Alignment explanation
Indices: 31497608--31497653 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
31497598 AAAAATGAGT
*
31497608 ATTTTCTTTCTTTCTT-TTTTCTA
1 ATTTTCTTTATTT-TTCTTTTCTA
31497631 ATTTTCTTTATTTTTCTTTTCTA
1 ATTTTCTTTATTTTTCTTTTCTA
31497654 CTCACTTTGC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 2 0.10
23 19 0.90
ACGTcount: A:0.11, C:0.15, G:0.00, T:0.74
Consensus pattern (23 bp):
ATTTTCTTTATTTTTCTTTTCTA
Found at i:31501375 original size:4 final size:4
Alignment explanation
Indices: 31501366--31501421 Score: 78
Period size: 4 Copynumber: 13.5 Consensus size: 4
31501356 AAAGATAAAG
31501366 ATAA ATAA ATAA CGA-AA ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATAAA
1 ATAA ATAA ATAA --ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATAA AT-AA
31501416 ATAA AT
1 ATAA AT
31501422 CAATGAACTA
Statistics
Matches: 48, Mismatches: 0, Indels: 8
0.86 0.00 0.14
Matches are distributed among these distances:
3 1 0.02
4 40 0.83
5 6 0.12
6 1 0.02
ACGTcount: A:0.73, C:0.02, G:0.02, T:0.23
Consensus pattern (4 bp):
ATAA
Found at i:31503902 original size:84 final size:86
Alignment explanation
Indices: 31503758--31504004 Score: 266
Period size: 84 Copynumber: 2.9 Consensus size: 86
31503748 AAAAGCATCG
* * * * * ** **
31503758 CTATAGAACGTGACCTTTAGCGGCACTTTTCCCACAAATGCTTCTATAGAATGTGGCCTTTAGCG
1 CTATAGAACGTGGCCTTTAGTGACGCTTTTTCCACAAACACCACTATAGAATGTGGCCTTTAGCG
* *
31503823 GCGCTTTTCCCACAAACGCC-
66 GCACTTGTCCCACAAACGCCA
* * *
31503843 GT-TAGAACGTGGCCTTTAGTGACGC-TTTTCGCACAAACACCACTATAGAACGTGGCCTTTAGT
1 CTATAGAACGTGGCCTTTAGTGACGCTTTTTC-CACAAACACCACTATAGAATGTGGCCTTTAGC
31503906 GGCACTTGTCCCACAAACGCCA
65 GGCACTTGTCCCACAAACGCCA
* * * * ** *
31503928 CTATAGAATGTGGCTTTTAGTGGCGCTTTTTCCACAAACATCGTTATAGAATGTGGCCTTTAGCA
1 CTATAGAACGTGGCCTTTAGTGACGCTTTTTCCACAAACACCACTATAGAATGTGGCCTTTAGCG
*
31503993 ACACTTGTCCCA
66 GCACTTGTCCCA
31504005 TAAATACTGC
Statistics
Matches: 133, Mismatches: 25, Indels: 7
0.81 0.15 0.04
Matches are distributed among these distances:
83 4 0.03
84 64 0.48
85 2 0.02
86 58 0.44
87 5 0.04
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.29
Consensus pattern (86 bp):
CTATAGAACGTGGCCTTTAGTGACGCTTTTTCCACAAACACCACTATAGAATGTGGCCTTTAGCG
GCACTTGTCCCACAAACGCCA
Found at i:31504053 original size:129 final size:126
Alignment explanation
Indices: 31503756--31504086 Score: 401
Period size: 129 Copynumber: 2.6 Consensus size: 126
31503746 GAAAAAGCAT
* *
31503756 CGCTATAGAACGTGACCTTTAGCGGCACTTTTCCCACAAATGCTTCTATAGAATGTGGCCTTTAG
1 CGCTATAGAACGTGACCTTTAGCGGCAC-TTTCCCACAAACGCTACTATAGAATGTGGCCTTTAG
* ** * * *
31503821 CGGCGCTTTTCCCACAAACGCCGTTAGAACGTGGCCTTTAGTGACGCTTTTCGCACAAACAC
65 CGGCGCTTTTCCCACAAACACCGTTAGAACGTGGCCTTTAGCAACACTTGTCCCACAAACAC
* * * * *
31503883 CACTATAGAACGTGGCCTTTAGTGGCACTTGTCCCACAAACGCCACTATAGAATGTGGCTTTTAG
1 CGCTATAGAACGTGACCTTTAGCGGCACTT-TCCCACAAACGCTACTATAGAATGTGGCCTTTAG
* * * * * *
31503948 TGGCGCTTTTTCCACAAACATCGTTATAGAATGTGGCCTTTAGCAACACTTGTCCCATAAATAC
65 CGGCGCTTTTCCCACAAACACCG-T-TAGAACGTGGCCTTTAGCAACACTTGTCCCACAAACAC
* * * * *
31504012 TGCTATAGAATGTGACCTTTAGCGGCACTTTCACCATAAACGCTGCTATAGAATGTGGCCTTCAG
1 CGCTATAGAACGTGACCTTTAGCGGCACTTTC-CCACAAACGCTACTATAGAATGTGGCCTTTAG
31504077 CGGCGCTTTT
65 CGGCGCTTTT
31504087 ACTAAAAACG
Statistics
Matches: 170, Mismatches: 30, Indels: 6
0.83 0.15 0.03
Matches are distributed among these distances:
126 2 0.01
127 74 0.44
128 3 0.02
129 91 0.54
ACGTcount: A:0.25, C:0.26, G:0.20, T:0.29
Consensus pattern (126 bp):
CGCTATAGAACGTGACCTTTAGCGGCACTTTCCCACAAACGCTACTATAGAATGTGGCCTTTAGC
GGCGCTTTTCCCACAAACACCGTTAGAACGTGGCCTTTAGCAACACTTGTCCCACAAACAC
Found at i:31504096 original size:43 final size:43
Alignment explanation
Indices: 31503756--31504102 Score: 313
Period size: 43 Copynumber: 8.1 Consensus size: 43
31503746 GAAAAAGCAT
* * *
31503756 CGCTATAGAACGTGACCTTTAGCGGCACTTTTCCCACAAATGC
1 CGCTATAGAATGTGGCCTTTAGCGGCACTTTTCCCACAAACGC
** *
31503799 TTCTATAGAATGTGGCCTTTAGCGGCGCTTTTCCCACAAACGC
1 CGCTATAGAATGTGGCCTTTAGCGGCACTTTTCCCACAAACGC
* * * * * *
31503842 CG-T-TAGAACGTGGCCTTTAGTGACGCTTTTCGCACAAACAC
1 CGCTATAGAATGTGGCCTTTAGCGGCACTTTTCCCACAAACGC
* * * *
31503883 CACTATAGAACGTGGCCTTTAGTGGCACTTGTCCCACAAACGC
1 CGCTATAGAATGTGGCCTTTAGCGGCACTTTTCCCACAAACGC
* * * * * **
31503926 CACTATAGAATGTGGCTTTTAGTGGCGCTTTTTCCACAAACAT
1 CGCTATAGAATGTGGCCTTTAGCGGCACTTTTCCCACAAACGC
* ** * * **
31503969 CGTTATAGAATGTGGCCTTTAGCAACACTTGTCCCATAAATAC
1 CGCTATAGAATGTGGCCTTTAGCGGCACTTTTCCCACAAACGC
* * *
31504012 TGCTATAGAATGTGACCTTTAGCGGCAC-TTTCACCATAAACGC
1 CGCTATAGAATGTGGCCTTTAGCGGCACTTTTC-CCACAAACGC
* * * * * *
31504055 TGCTATAGAATGTGGCCTTCAGCGGCGCTTTTACTAAAAACGC
1 CGCTATAGAATGTGGCCTTTAGCGGCACTTTTCCCACAAACGC
31504098 CGCTA
1 CGCTA
31504103 ACTTTGGCAG
Statistics
Matches: 247, Mismatches: 53, Indels: 8
0.80 0.17 0.03
Matches are distributed among these distances:
41 34 0.14
42 5 0.02
43 205 0.83
44 3 0.01
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (43 bp):
CGCTATAGAATGTGGCCTTTAGCGGCACTTTTCCCACAAACGC
Found at i:31504900 original size:13 final size:14
Alignment explanation
Indices: 31504874--31504902 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
31504864 ACAAACGATG
31504874 AATTAAACCATTAT
1 AATTAAACCATTAT
31504888 AATTAAA-CATTAT
1 AATTAAACCATTAT
31504901 AA
1 AA
31504903 ATATTTAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.53
14 7 0.47
ACGTcount: A:0.55, C:0.10, G:0.00, T:0.34
Consensus pattern (14 bp):
AATTAAACCATTAT
Found at i:31507137 original size:13 final size:13
Alignment explanation
Indices: 31507119--31507146 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
31507109 CCTATCAATT
31507119 TGAGGACTAACAG
1 TGAGGACTAACAG
31507132 TGAGGACTAACAG
1 TGAGGACTAACAG
31507145 TG
1 TG
31507147 GGTCATATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.36, C:0.14, G:0.32, T:0.18
Consensus pattern (13 bp):
TGAGGACTAACAG
Found at i:31508056 original size:34 final size:34
Alignment explanation
Indices: 31507980--31508071 Score: 89
Period size: 34 Copynumber: 2.7 Consensus size: 34
31507970 GATATGGTAT
* * *
31507980 TGAATTGGGCTAAGGCCCACACTGTTACTGCTAC
1 TGAAATGGGCTAAGGCCCACACTGATACTACTAC
* * *
31508014 TGCAATGGGCTAAGGCCCACATTGATATTACTAC
1 TGAAATGGGCTAAGGCCCACACTGATACTACTAC
*
31508048 T-AATATGGGCTTAA-GCCCAGACTG
1 TGAA-ATGGGC-TAAGGCCCACACTG
31508072 TTCAGCACTA
Statistics
Matches: 47, Mismatches: 9, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
33 1 0.02
34 43 0.91
35 3 0.06
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (34 bp):
TGAAATGGGCTAAGGCCCACACTGATACTACTAC
Found at i:31508508 original size:19 final size:19
Alignment explanation
Indices: 31508484--31508524 Score: 82
Period size: 19 Copynumber: 2.2 Consensus size: 19
31508474 TTGGATTAAT
31508484 CAAGATAGTTTTTTCCAAA
1 CAAGATAGTTTTTTCCAAA
31508503 CAAGATAGTTTTTTCCAAA
1 CAAGATAGTTTTTTCCAAA
31508522 CAA
1 CAA
31508525 CCACAAACAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.39, C:0.17, G:0.10, T:0.34
Consensus pattern (19 bp):
CAAGATAGTTTTTTCCAAA
Found at i:31512676 original size:9 final size:9
Alignment explanation
Indices: 31512664--31512735 Score: 65
Period size: 9 Copynumber: 8.0 Consensus size: 9
31512654 AGGTGTAAAC
31512664 TATGTAAGT
1 TATGTAAGT
31512673 TATGTAAGT
1 TATGTAAGT
* *
31512682 TATGGTATGA
1 TAT-GTAAGT
* *
31512692 TATAT-ATT
1 TATGTAAGT
* *
31512700 TTTGTACGT
1 TATGTAAGT
*
31512709 TATGTAAAT
1 TATGTAAGT
31512718 TATGTAAGT
1 TATGTAAGT
31512727 TATGTAAGT
1 TATGTAAGT
31512736 CCATAGATAT
Statistics
Matches: 47, Mismatches: 14, Indels: 4
0.72 0.22 0.06
Matches are distributed among these distances:
8 3 0.06
9 37 0.79
10 7 0.15
ACGTcount: A:0.32, C:0.01, G:0.19, T:0.47
Consensus pattern (9 bp):
TATGTAAGT
Found at i:31512751 original size:54 final size:55
Alignment explanation
Indices: 31512657--31512771 Score: 153
Period size: 56 Copynumber: 2.1 Consensus size: 55
31512647 ATCTAATAGG
* * * *
31512657 TGTAAACTATGTAAGTTATGTAAGTTATGGTATG-ATATATATTTTTGTACGTTA
1 TGTAAACTATGTAAGTTATGTAAGTCATGATATGAATATATATTTATGTAAGTTA
*
31512711 TGTAAATTATGTAAGTTATGTAAGTCCATAGATATG-ATATATATTTATGTAAGTTA
1 TGTAAACTATGTAAGTTATGTAAGT-CAT-GATATGAATATATATTTATGTAAGTTA
31512767 TGTAA
1 TGTAA
31512772 GTCCATAGAT
Statistics
Matches: 54, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
54 24 0.44
55 2 0.04
56 28 0.52
ACGTcount: A:0.35, C:0.03, G:0.17, T:0.44
Consensus pattern (55 bp):
TGTAAACTATGTAAGTTATGTAAGTCATGATATGAATATATATTTATGTAAGTTA
Found at i:31512768 original size:38 final size:38
Alignment explanation
Indices: 31512717--31512809 Score: 163
Period size: 38 Copynumber: 2.5 Consensus size: 38
31512707 GTTATGTAAA
*
31512717 TTATGTAAGTTATGTAAGTCCATAGATATGATATATAT
1 TTATGTAAGTTATGTAAGTCCATAGATATCATATATAT
31512755 TTATGTAAGTTATGTAAGTCCATAGATATCATATATAT
1 TTATGTAAGTTATGTAAGTCCATAGATATCATATATAT
31512793 TTATGT-A-TTATGTAAGT
1 TTATGTAAGTTATGTAAGT
31512810 TATGATCCAA
Statistics
Matches: 54, Mismatches: 1, Indels: 2
0.95 0.02 0.04
Matches are distributed among these distances:
36 10 0.19
37 1 0.02
38 43 0.80
ACGTcount: A:0.35, C:0.05, G:0.15, T:0.44
Consensus pattern (38 bp):
TTATGTAAGTTATGTAAGTCCATAGATATCATATATAT
Found at i:31516272 original size:41 final size:40
Alignment explanation
Indices: 31516195--31516277 Score: 112
Period size: 41 Copynumber: 2.0 Consensus size: 40
31516185 TTAATATATA
*
31516195 TTAGCGGTGTTTGGAAAAAAACACCACTATCGCTCAACTT
1 TTAGCGGTGTTTGGAAAAAAACACCACTATCACTCAACTT
* * * *
31516235 TTAGCGGTGTTTGGACCAAAAACGCCATTATTACTCAACTT
1 TTAGCGGTGTTTGGA-AAAAAACACCACTATCACTCAACTT
31516276 TT
1 TT
31516278 TGAAGCGTTT
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
40 15 0.41
41 22 0.59
ACGTcount: A:0.30, C:0.22, G:0.17, T:0.31
Consensus pattern (40 bp):
TTAGCGGTGTTTGGAAAAAAACACCACTATCACTCAACTT
Found at i:31518596 original size:21 final size:20
Alignment explanation
Indices: 31518570--31518623 Score: 63
Period size: 21 Copynumber: 2.5 Consensus size: 20
31518560 ATAATCTTTG
31518570 AATTTATTTTTTAGAATTTTT
1 AATTTATTTTTT-GAATTTTT
*
31518591 AATTTATATATTTGAATTTTT
1 AATTTAT-TTTTTGAATTTTT
*
31518612 ATATATATTTTT
1 A-ATTTATTTTT
31518624 CAATTTCATA
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
21 19 0.68
22 9 0.32
ACGTcount: A:0.31, C:0.00, G:0.04, T:0.65
Consensus pattern (20 bp):
AATTTATTTTTTGAATTTTT
Found at i:31518618 original size:20 final size:21
Alignment explanation
Indices: 31518583--31518629 Score: 60
Period size: 20 Copynumber: 2.3 Consensus size: 21
31518573 TTATTTTTTA
*
31518583 GAATTTTTAATTTATATATTT
1 GAATTTTTAATATATATATTT
*
31518604 GAATTTTT-ATATATATTTTT
1 GAATTTTTAATATATATATTT
*
31518624 CAATTT
1 GAATTT
31518630 CATATAATTA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
20 15 0.65
21 8 0.35
ACGTcount: A:0.32, C:0.02, G:0.04, T:0.62
Consensus pattern (21 bp):
GAATTTTTAATATATATATTT
Found at i:31527923 original size:15 final size:14
Alignment explanation
Indices: 31527880--31527927 Score: 53
Period size: 15 Copynumber: 3.3 Consensus size: 14
31527870 TAATATAAGT
31527880 AAAAAAATTATATA
1 AAAAAAATTATATA
*
31527894 ACAAATATATT-TATA
1 A-AAA-AAATTATATA
31527909 AAAAAAATTGATATA
1 AAAAAAATT-ATATA
31527924 AAAA
1 AAAA
31527928 GTGAGGCTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 7
0.76 0.05 0.19
Matches are distributed among these distances:
13 4 0.14
14 4 0.14
15 16 0.57
16 4 0.14
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.29
Consensus pattern (14 bp):
AAAAAAATTATATA
Found at i:31529888 original size:19 final size:19
Alignment explanation
Indices: 31529864--31529901 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
31529854 AATGTTCTTG
31529864 TTGATTTATCTTGAAAATA
1 TTGATTTATCTTGAAAATA
31529883 TTGATTTATCTTGAAAATA
1 TTGATTTATCTTGAAAATA
31529902 GACTCATTAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.37, C:0.05, G:0.11, T:0.47
Consensus pattern (19 bp):
TTGATTTATCTTGAAAATA
Found at i:31535471 original size:20 final size:20
Alignment explanation
Indices: 31535446--31535511 Score: 62
Period size: 20 Copynumber: 3.3 Consensus size: 20
31535436 TAAATGCGTT
*
31535446 CAGGGGTATCGGAGTACAAA
1 CAGGGGTATCGAAGTACAAA
* * * *
31535466 CAGGGGCAT-GTATGTGCAAT
1 CAGGGGTATCG-AAGTACAAA
*
31535486 CAGGGGTACCGAAGTACAAA
1 CAGGGGTATCGAAGTACAAA
31535506 CAGGGG
1 CAGGGG
31535512 CACGTTTGTG
Statistics
Matches: 34, Mismatches: 10, Indels: 4
0.71 0.21 0.08
Matches are distributed among these distances:
19 1 0.03
20 32 0.94
21 1 0.03
ACGTcount: A:0.32, C:0.17, G:0.36, T:0.15
Consensus pattern (20 bp):
CAGGGGTATCGAAGTACAAA
Found at i:31535502 original size:40 final size:40
Alignment explanation
Indices: 31535445--31535527 Score: 121
Period size: 40 Copynumber: 2.1 Consensus size: 40
31535435 GTAAATGCGT
* * *
31535445 TCAGGGGTATCGGAGTACAAACAGGGGCATGTATGTGCAA
1 TCAGGGGTACCGAAGTACAAACAGGGGCACGTATGTGCAA
* *
31535485 TCAGGGGTACCGAAGTACAAACAGGGGCACGTTTGTGTAA
1 TCAGGGGTACCGAAGTACAAACAGGGGCACGTATGTGCAA
31535525 TCA
1 TCA
31535528 TACAATAATT
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 38 1.00
ACGTcount: A:0.30, C:0.17, G:0.33, T:0.20
Consensus pattern (40 bp):
TCAGGGGTACCGAAGTACAAACAGGGGCACGTATGTGCAA
Found at i:31535592 original size:26 final size:26
Alignment explanation
Indices: 31535561--31535615 Score: 110
Period size: 26 Copynumber: 2.1 Consensus size: 26
31535551 ATATTTACAG
31535561 AATCATAATATAAAAACACAAGTAGA
1 AATCATAATATAAAAACACAAGTAGA
31535587 AATCATAATATAAAAACACAAGTAGA
1 AATCATAATATAAAAACACAAGTAGA
31535613 AAT
1 AAT
31535616 TCATTTACGT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.62, C:0.11, G:0.07, T:0.20
Consensus pattern (26 bp):
AATCATAATATAAAAACACAAGTAGA
Done.