Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr03 135709677
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 135709677
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 111 of 438
Found at i:32194830 original size:21 final size:20
Alignment explanation
Indices: 32194789--32194828 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
32194779 AATTATTATT
32194789 TTTTCATAAAAATTATAAAA
1 TTTTCATAAAAATTATAAAA
32194809 TTTT-ATATAAAATTATAAAA
1 TTTTCATA-AAAATTATAAAA
32194829 ATATGAAAAC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 3 0.16
20 16 0.84
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (20 bp):
TTTTCATAAAAATTATAAAA
Found at i:32194844 original size:18 final size:16
Alignment explanation
Indices: 32194813--32194860 Score: 51
Period size: 18 Copynumber: 2.8 Consensus size: 16
32194803 ATAAAATTTT
32194813 ATATAAAATTATAAAA
1 ATATAAAATTATAAAA
32194829 ATATGAAAACTTATAAATA
1 ATAT-AAAA-TTATAAA-A
*
32194848 TTATAAAAATTAT
1 ATAT-AAAATTAT
32194861 TATAAATTAT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
16 4 0.15
17 4 0.15
18 11 0.41
19 8 0.30
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.35
Consensus pattern (16 bp):
ATATAAAATTATAAAA
Found at i:32194882 original size:21 final size:22
Alignment explanation
Indices: 32194839--32194888 Score: 63
Period size: 21 Copynumber: 2.4 Consensus size: 22
32194829 ATATGAAAAC
32194839 TTATAAA-TATTATAAAAATTA
1 TTATAAATTATTATAAAAATTA
32194860 TTATAAATTATTA-AAAACA-TA
1 TTATAAATTATTATAAAA-ATTA
32194881 TTA-AAATT
1 TTATAAATT
32194889 CAAAAAAGCT
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
20 5 0.19
21 16 0.59
22 6 0.22
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (22 bp):
TTATAAATTATTATAAAAATTA
Found at i:32195348 original size:20 final size:20
Alignment explanation
Indices: 32195323--32195364 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
32195313 TGACCGATTC
32195323 AATTAAATAAAT-TATTAAAA
1 AATTAAA-AAATATATTAAAA
*
32195343 AATTAAAAAATATTTTAAAA
1 AATTAAAAAATATATTAAAA
32195363 AA
1 AA
32195365 ATCTAATTCA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 4 0.20
20 16 0.80
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (20 bp):
AATTAAAAAATATATTAAAA
Found at i:32204341 original size:46 final size:48
Alignment explanation
Indices: 32204227--32204353 Score: 170
Period size: 46 Copynumber: 2.7 Consensus size: 48
32204217 ATATCTAAGT
* * *
32204227 CGATGCCATGTCCCAGACAGGTCTTACACTAGCTTGCATACCTCGAGGT
1 CGATG-CATGTCCCAGACATGTCTTACACTAGCTTGCATACATCGAGGC
*
32204276 CGATGCATGTCCCAGACATGTCTTACACTAGCTCT-CATA-AT-GTGGC
1 CGATGCATGTCCCAGACATGTCTTACACTAGCT-TGCATACATCGAGGC
*
32204322 CGATGCATGTCCTAGACATGTCTTACACTAGC
1 CGATGCATGTCCCAGACATGTCTTACACTAGC
32204354 ACACATATCA
Statistics
Matches: 72, Mismatches: 5, Indels: 5
0.88 0.06 0.06
Matches are distributed among these distances:
46 34 0.47
47 1 0.01
48 31 0.43
49 6 0.08
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (48 bp):
CGATGCATGTCCCAGACATGTCTTACACTAGCTTGCATACATCGAGGC
Found at i:32206215 original size:41 final size:41
Alignment explanation
Indices: 32206158--32206235 Score: 138
Period size: 41 Copynumber: 1.9 Consensus size: 41
32206148 CAGTTGAAAG
* *
32206158 GGGTAGCTACGTCTTGACTGACAGCTTGTGTGAGCAGCACC
1 GGGTAGCTACATCTTGACTGACAACTTGTGTGAGCAGCACC
32206199 GGGTAGCTACATCTTGACTGACAACTTGTGTGAGCAG
1 GGGTAGCTACATCTTGACTGACAACTTGTGTGAGCAG
32206236 ACCTATTGAT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 35 1.00
ACGTcount: A:0.22, C:0.22, G:0.31, T:0.26
Consensus pattern (41 bp):
GGGTAGCTACATCTTGACTGACAACTTGTGTGAGCAGCACC
Found at i:32213571 original size:61 final size:61
Alignment explanation
Indices: 32213472--32213594 Score: 228
Period size: 61 Copynumber: 2.0 Consensus size: 61
32213462 TAATTCCGAG
32213472 TATATCTGAGATATCTCAGTATCCTCACAATTAATTTCCAGTGGTTTTCCCCTGGATTGCT
1 TATATCTGAGATATCTCAGTATCCTCACAATTAATTTCCAGTGGTTTTCCCCTGGATTGCT
* *
32213533 TATATCTGAGATATCTCAGTATCCTCACAATTACTTTCCAGTGGTTTTCTCCTGGATTGCT
1 TATATCTGAGATATCTCAGTATCCTCACAATTAATTTCCAGTGGTTTTCCCCTGGATTGCT
32213594 T
1 T
32213595 GTGAATCTAC
Statistics
Matches: 60, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
61 60 1.00
ACGTcount: A:0.22, C:0.23, G:0.15, T:0.41
Consensus pattern (61 bp):
TATATCTGAGATATCTCAGTATCCTCACAATTAATTTCCAGTGGTTTTCCCCTGGATTGCT
Found at i:32217670 original size:40 final size:40
Alignment explanation
Indices: 32217625--32217792 Score: 162
Period size: 40 Copynumber: 4.2 Consensus size: 40
32217615 CGGAATATAA
32217625 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * *
32217665 CCGGATAGAAT-ATCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCA-CTAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
32217705 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
32217745 CCGGATATAATTTCCAGCATAATTGTCTTCGGGAT-TTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGG-TCTTAGC
32217785 CCGGATAT
1 CCGGATAT
32217793 CATTCAATTT
Statistics
Matches: 105, Mismatches: 19, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
39 2 0.02
40 101 0.96
41 2 0.02
ACGTcount: A:0.24, C:0.26, G:0.23, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:32217775 original size:80 final size:80
Alignment explanation
Indices: 32217641--32217790 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 80
32217631 ATAATCACGT
*
32217641 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATATCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATATCTCGCACGAATGCCTTCGGGAT-TTAGC
32217705 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * * *
32217721 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATATCTC-GCACGAA-TGCCTTCGGGATTTAG
32217784 CCCGGAT
64 CCCGGAT
32217791 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
79 3 0.05
80 57 0.93
81 1 0.02
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATATCTCGCACGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Found at i:32219670 original size:50 final size:50
Alignment explanation
Indices: 32219554--32219849 Score: 290
Period size: 50 Copynumber: 5.9 Consensus size: 50
32219544 ATTGTGAGAA
* * * * *** *
32219554 CACATGTGAAGTACTATGTGCAGGCTAATATGTGTTTAAGATGGTTGTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAG-T-TAGGT
*
32219606 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGT
* * ** * * * * *
32219656 CGCATGTGTAGTACTAAGTGCAGGCTACTATGCATACCCGACAACTTCGAT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA-TAGTTAGGT
* * *
32219707 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGT
* * *
32219757 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATTGTT-GGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGT
* * **
32219806 CGA-ATATGTAGTACTAAGTGCAGGCTACTATGCATACCAGATAG
1 C-ACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAG
32219850 CTTCAGTTAC
Statistics
Matches: 201, Mismatches: 41, Indels: 7
0.81 0.16 0.03
Matches are distributed among these distances:
49 38 0.19
50 88 0.44
51 40 0.20
52 35 0.17
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.29
Consensus pattern (50 bp):
CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGT
Found at i:32219732 original size:101 final size:101
Alignment explanation
Indices: 32219605--32219786 Score: 328
Period size: 101 Copynumber: 1.8 Consensus size: 101
32219595 TGGTTGTAGG
*
32219605 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGTCGCATGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGTCACATGTGTAGTAC
32219670 TAAGTGCAGGCTACTATGCATACCCGACAACTTCGA
66 TAAGTGCAGGCTACTATGCATACCCGACAACTTCGA
* * *
32219706 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGTCACATGTGTAGTAC
32219771 TAAGTGCAGGCTACTA
66 TAAGTGCAGGCTACTA
32219787 CGTGTACCGG
Statistics
Matches: 77, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
101 77 1.00
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.28
Consensus pattern (101 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGTCACATGTGTAGTAC
TAAGTGCAGGCTACTATGCATACCCGACAACTTCGA
Found at i:32223029 original size:6 final size:7
Alignment explanation
Indices: 32223011--32223039 Score: 58
Period size: 7 Copynumber: 4.1 Consensus size: 7
32223001 ATCAACAACC
32223011 GAAAAAA
1 GAAAAAA
32223018 GAAAAAA
1 GAAAAAA
32223025 GAAAAAA
1 GAAAAAA
32223032 GAAAAAA
1 GAAAAAA
32223039 G
1 G
32223040 GAAGCCATTG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (7 bp):
GAAAAAA
Found at i:32227631 original size:40 final size:40
Alignment explanation
Indices: 32227576--32227739 Score: 170
Period size: 40 Copynumber: 4.1 Consensus size: 40
32227566 TGAATGATAC
* * *
32227576 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
*
32227616 CCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCAATT-GTGCTAG-TGATTATAT
* * * ** *
32227656 CCGGGCTAAGACCCGAAGGCAATTGTGCAAATCACCAAAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
* * * *
32227696 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTGTAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
32227736 CCGG
1 CCGG
32227740 TTAAATCCCG
Statistics
Matches: 100, Mismatches: 20, Indels: 8
0.78 0.16 0.06
Matches are distributed among these distances:
39 3 0.03
40 92 0.92
41 5 0.05
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
Found at i:32235619 original size:40 final size:40
Alignment explanation
Indices: 32235564--32235661 Score: 144
Period size: 40 Copynumber: 2.5 Consensus size: 40
32235554 AATGATACCC
* * *
32235564 GGCTAAGTCCCGAAGGCATTTATGCTAG-TGATTATATCCG
1 GGCTAAGACCCGAAGGCATTCATGCGAGTTG-TTATATCCG
*
32235604 GGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATATCCG
1 GGCTAAGACCCGAAGGCATTCATGCGAGTTGTTATATCCG
32235644 GGCTAAGACCCGAAGGCA
1 GGCTAAGACCCGAAGGCA
32235662 ATTGTGCAAA
Statistics
Matches: 53, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
40 51 0.96
41 2 0.04
ACGTcount: A:0.26, C:0.22, G:0.29, T:0.23
Consensus pattern (40 bp):
GGCTAAGACCCGAAGGCATTCATGCGAGTTGTTATATCCG
Found at i:32235683 original size:40 final size:40
Alignment explanation
Indices: 32235599--32235706 Score: 114
Period size: 40 Copynumber: 2.8 Consensus size: 40
32235589 TAGTGATTAT
* * **** *
32235599 ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTGTTAT
1 ATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAATCACCAA
32235639 ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAATCACCAA
1 ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAATCACCAA
*
32235679 ATCC--GTTAAGACCCGAAGGCAATTGTGC
1 ATCCGGGCTAAGACCCGAAGGCAATTGTGC
32235707 TTGTGGTTGT
Statistics
Matches: 59, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
38 23 0.39
40 33 0.56
41 3 0.05
ACGTcount: A:0.29, C:0.25, G:0.26, T:0.20
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAATCACCAA
Found at i:32240272 original size:40 final size:40
Alignment explanation
Indices: 32240217--32240380 Score: 170
Period size: 40 Copynumber: 4.1 Consensus size: 40
32240207 TGAATGATAC
* * *
32240217 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
*
32240257 CCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCAATT-GTGCTAG-TGATTATAT
* * * ** *
32240297 CCGGGCTAAGACCCGAAGGCAATTGTGCAAATCACCAAAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
* * * *
32240337 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTGTAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
32240377 CCGG
1 CCGG
32240381 TTAAATCCGA
Statistics
Matches: 100, Mismatches: 20, Indels: 8
0.78 0.16 0.06
Matches are distributed among these distances:
39 3 0.03
40 92 0.92
41 5 0.05
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
Found at i:32245000 original size:40 final size:40
Alignment explanation
Indices: 32244945--32245154 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
32244935 AACATTGAAA
32244945 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
32244985 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
32245025 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
32245065 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
32245104 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
32245145 CTATATCCGG
1 ATATATCCGG
32245155 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:32253326 original size:29 final size:28
Alignment explanation
Indices: 32253293--32253372 Score: 83
Period size: 28 Copynumber: 2.8 Consensus size: 28
32253283 AGAAACAAAC
32253293 TGGGCCTGAGCCCATTATAGAATATCAGG
1 TGGGCCT-AGCCCATTATAGAATATCAGG
* *
32253322 TGGGCTTTAGCCCATTA-ACAGA-ATCAGG
1 TGGGC-CTAGCCCATTATAGA-ATATCAGG
*
32253350 TGGGCCTACGCCCAGTATAGAAT
1 TGGGCCTA-GCCCATTATAGAAT
32253373 CAGTATCAGA
Statistics
Matches: 41, Mismatches: 5, Indels: 10
0.73 0.09 0.18
Matches are distributed among these distances:
27 2 0.05
28 21 0.51
29 17 0.41
30 1 0.02
ACGTcount: A:0.28, C:0.23, G:0.26, T:0.24
Consensus pattern (28 bp):
TGGGCCTAGCCCATTATAGAATATCAGG
Found at i:32259607 original size:25 final size:27
Alignment explanation
Indices: 32259570--32259622 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
32259560 TCAAACATGC
32259570 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
* *
32259596 ATTTCGGT-AATTTATCTCCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
32259622 A
1 A
32259623 AAATGTAAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.25, C:0.15, G:0.23, T:0.38
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACTCCTAGGGGT
Found at i:32261121 original size:26 final size:26
Alignment explanation
Indices: 32261085--32261220 Score: 236
Period size: 26 Copynumber: 5.2 Consensus size: 26
32261075 ACATGAATTC
32261085 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
32261111 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
32261137 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
32261163 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
32261189 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
32261215 TTATCA
1 TTATCA
32261221 ATTTGTATCA
Statistics
Matches: 104, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 104 1.00
ACGTcount: A:0.37, C:0.25, G:0.05, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:32265408 original size:25 final size:27
Alignment explanation
Indices: 32265371--32265423 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
32265361 TCAAACATGC
32265371 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
* *
32265397 ATTTCGGT-AATTTATCTCCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
32265423 A
1 A
32265424 AAACTGTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.25, C:0.15, G:0.23, T:0.38
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACTCCTAGGGGT
Found at i:32266923 original size:26 final size:26
Alignment explanation
Indices: 32266887--32267022 Score: 236
Period size: 26 Copynumber: 5.2 Consensus size: 26
32266877 ACATGAATTC
32266887 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
32266913 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
32266939 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
32266965 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
32266991 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
32267017 TTATCA
1 TTATCA
32267023 ATTTGTATCA
Statistics
Matches: 104, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 104 1.00
ACGTcount: A:0.37, C:0.25, G:0.05, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:32267252 original size:18 final size:18
Alignment explanation
Indices: 32267229--32267266 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
32267219 TCACCCCTTT
32267229 TATGGAACAAAAATTAAC
1 TATGGAACAAAAATTAAC
32267247 TATGGAACAAAAATTAAC
1 TATGGAACAAAAATTAAC
32267265 TA
1 TA
32267267 AAATTGTCGG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.55, C:0.11, G:0.11, T:0.24
Consensus pattern (18 bp):
TATGGAACAAAAATTAAC
Found at i:32268511 original size:16 final size:16
Alignment explanation
Indices: 32268479--32268512 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
32268469 TATATAAATC
*
32268479 AAAGAATTATTAGAAA
1 AAAGAATTAATAGAAA
32268495 AAAG-ATTAATAGAAA
1 AAAGAATTAATAGAAA
32268510 AAA
1 AAA
32268513 CTAATAGTCC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 13 0.76
16 4 0.24
ACGTcount: A:0.68, C:0.00, G:0.12, T:0.21
Consensus pattern (16 bp):
AAAGAATTAATAGAAA
Found at i:32269012 original size:16 final size:16
Alignment explanation
Indices: 32268991--32269021 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
32268981 GAGTCCTACG
*
32268991 AAAATAGAATTAGAAA
1 AAAATAGAAATAGAAA
32269007 AAAATAGAAATAGAA
1 AAAATAGAAATAGAA
32269022 TTTTTAGGAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.71, C:0.00, G:0.13, T:0.16
Consensus pattern (16 bp):
AAAATAGAAATAGAAA
Found at i:32273464 original size:8 final size:8
Alignment explanation
Indices: 32273451--32273507 Score: 55
Period size: 8 Copynumber: 7.1 Consensus size: 8
32273441 TCACTCGAAT
32273451 TCACATAG
1 TCACATAG
32273459 TCACATA-
1 TCACATAG
*
32273466 TACACATAA
1 T-CACATAG
*
32273475 TCTCATGAG
1 TCACAT-AG
*
32273484 -CTCATAG
1 TCACATAG
32273491 TCACATAG
1 TCACATAG
32273499 TCACATAG
1 TCACATAG
32273507 T
1 T
32273508 TCCTAGTGGC
Statistics
Matches: 42, Mismatches: 3, Indels: 8
0.79 0.06 0.15
Matches are distributed among these distances:
7 3 0.07
8 37 0.88
9 2 0.05
ACGTcount: A:0.37, C:0.25, G:0.11, T:0.28
Consensus pattern (8 bp):
TCACATAG
Found at i:32278002 original size:43 final size:41
Alignment explanation
Indices: 32277935--32278052 Score: 123
Period size: 43 Copynumber: 2.8 Consensus size: 41
32277925 AGCTCGTATA
* *
32277935 ATGCCAATGTCCCAGACGTGGTCTTACATGTAA-TCAAATATCG
1 ATGCC-ATGTCCCAGAC-AGGTCTTACACGTAAGTCAAATAT-G
*
32277978 ATGCCACTGTCCCAGACAGAGTCTTATACG-AAGTCAAATATG
1 ATGCCA-TGTCCCAGACAG-GTCTTACACGTAAGTCAAATATG
*
32278020 ATGCTGATGTCCCAGACATGGTCTTACACGTAA
1 ATGC-CATGTCCCAGACA-GGTCTTACACGTAA
32278053 ATCTCAAATC
Statistics
Matches: 64, Mismatches: 5, Indels: 12
0.79 0.06 0.15
Matches are distributed among these distances:
42 29 0.45
43 35 0.55
ACGTcount: A:0.31, C:0.24, G:0.19, T:0.26
Consensus pattern (41 bp):
ATGCCATGTCCCAGACAGGTCTTACACGTAAGTCAAATATG
Found at i:32279369 original size:12 final size:12
Alignment explanation
Indices: 32279352--32279387 Score: 63
Period size: 12 Copynumber: 3.0 Consensus size: 12
32279342 CTCATAGCAT
32279352 CTTCGGGCTCCC
1 CTTCGGGCTCCC
32279364 CTTCGGGCTCCC
1 CTTCGGGCTCCC
*
32279376 CTTCGAGCTCCC
1 CTTCGGGCTCCC
32279388 ACATAGCCTC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.03, C:0.50, G:0.22, T:0.25
Consensus pattern (12 bp):
CTTCGGGCTCCC
Found at i:32282598 original size:40 final size:40
Alignment explanation
Indices: 32282513--32282663 Score: 141
Period size: 40 Copynumber: 3.8 Consensus size: 40
32282503 AATTGAATGA
* * * **
32282513 TATCCGGGCTAAGCCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGTCA-TAC
* *
32282553 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGT--CATAC
*
32282594 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTCATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTCATAC
*
32282633 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
32282664 ACATGGTTAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 1 0.01
39 5 0.05
40 84 0.91
41 2 0.02
ACGTcount: A:0.26, C:0.25, G:0.27, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATAC
Found at i:32282677 original size:40 final size:40
Alignment explanation
Indices: 32282550--32282679 Score: 154
Period size: 40 Copynumber: 3.2 Consensus size: 40
32282540 ATGCTGGAAA
* * *
32282550 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * * **
32282590 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* *
32282630 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
32282670 TTATATCCGG
1 TTATATCCGG
32282680 TTATATTCCG
Statistics
Matches: 73, Mismatches: 16, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
39 1 0.01
40 72 0.99
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:32290596 original size:40 final size:40
Alignment explanation
Indices: 32290511--32290661 Score: 141
Period size: 40 Copynumber: 3.8 Consensus size: 40
32290501 AATTGAATGA
* * * **
32290511 TATCCGGGCTAAGCCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGTCA-TAC
* *
32290551 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGT--CATAC
*
32290592 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTCATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTCATAC
*
32290631 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
32290662 ACATGGTTAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 1 0.01
39 5 0.05
40 84 0.91
41 2 0.02
ACGTcount: A:0.26, C:0.25, G:0.27, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATAC
Found at i:32290675 original size:40 final size:40
Alignment explanation
Indices: 32290548--32290677 Score: 154
Period size: 40 Copynumber: 3.2 Consensus size: 40
32290538 ATGCTGGAAA
* * *
32290548 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * * **
32290588 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* *
32290628 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
32290668 TTATATCCGG
1 TTATATCCGG
32290678 TTATATTCCG
Statistics
Matches: 73, Mismatches: 16, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
39 1 0.01
40 72 0.99
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:32295739 original size:12 final size:12
Alignment explanation
Indices: 32295718--32295750 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
32295708 CTGAGACACA
32295718 TGCCCGTGTCTC
1 TGCCCGTGTCTC
*
32295730 TGCTCGTGTCTC
1 TGCCCGTGTCTC
32295742 TGCCCGTGT
1 TGCCCGTGT
32295751 GGACAAAAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.00, C:0.36, G:0.27, T:0.36
Consensus pattern (12 bp):
TGCCCGTGTCTC
Found at i:32308364 original size:20 final size:22
Alignment explanation
Indices: 32308339--32308386 Score: 57
Period size: 20 Copynumber: 2.3 Consensus size: 22
32308329 TATTTAATTA
32308339 ATAATT-TTTAATAAA-AT-ATT
1 ATAATTATTT-ATAAATATCATT
*
32308359 ATAATTATTTTTAAATATCATT
1 ATAATTATTTATAAATATCATT
32308381 ATAATT
1 ATAATT
32308387 GTAACACCCC
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
20 10 0.42
21 5 0.21
22 9 0.38
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (22 bp):
ATAATTATTTATAAATATCATT
Found at i:32309929 original size:33 final size:33
Alignment explanation
Indices: 32309875--32309985 Score: 152
Period size: 33 Copynumber: 3.4 Consensus size: 33
32309865 TACTCTCTAT
* * *
32309875 TTGGTGTGCTGGTTGGATTAGCTTTTATGAACA
1 TTGGTGTGATGGTTGGTTTAGCTCTTATGAACA
* *
32309908 TTGTTGTGATGGTTGGTTTAGCTCTTATGAGCA
1 TTGGTGTGATGGTTGGTTTAGCTCTTATGAACA
32309941 TTGGTGTGATGGTTGGTTTAGCTCTTAT-AAGCA
1 TTGGTGTGATGGTTGGTTTAGCTCTTATGAA-CA
*
32309974 TTGGTATGATGG
1 TTGGTGTGATGG
32309986 ATGGATTGGC
Statistics
Matches: 69, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
32 1 0.01
33 68 0.99
ACGTcount: A:0.17, C:0.08, G:0.32, T:0.43
Consensus pattern (33 bp):
TTGGTGTGATGGTTGGTTTAGCTCTTATGAACA
Found at i:32309954 original size:66 final size:67
Alignment explanation
Indices: 32309873--32310025 Score: 168
Period size: 66 Copynumber: 2.3 Consensus size: 67
32309863 TATACTCTCT
* * * * * * *
32309873 ATTTGGTGTGCTGGTTGGATTAGCTTTTATGAA-CATTGTTGTGATGGTTGGTTTAGCTCTTA-T
1 ATTTGGTGTGATGGTTGGATTAGCTCTTAT-AAGCATTGGTATGATGGATGGATTAGCTC-GAGT
32309936 GAGC
64 GAGC
* *
32309940 A-TTGGTGTGATGGTTGGTTTAGCTCTTATAAGCATTGGTATGATGGATGGATTGGCTCGAGTGA
1 ATTTGGTGTGATGGTTGGATTAGCTCTTATAAGCATTGGTATGATGGATGGATTAGCTCGAGTGA
32310004 GC
66 GC
*
32310006 ATTTGGTGTGTTTGGTTGGA
1 ATTTGGTGTG-ATGGTTGGA
32310026 CTGATGATGT
Statistics
Matches: 71, Mismatches: 11, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
65 3 0.04
66 52 0.73
67 9 0.13
68 7 0.10
ACGTcount: A:0.17, C:0.08, G:0.33, T:0.42
Consensus pattern (67 bp):
ATTTGGTGTGATGGTTGGATTAGCTCTTATAAGCATTGGTATGATGGATGGATTAGCTCGAGTGA
GC
Found at i:32310007 original size:33 final size:33
Alignment explanation
Indices: 32309888--32310008 Score: 100
Period size: 33 Copynumber: 3.7 Consensus size: 33
32309878 GTGTGCTGGT
* * * * * *
32309888 TGGATTAGCTTTTATGAACATTGTTGTGATGGT
1 TGGATTAGCTCTGATGAGCATTGGTATGATGGA
* * * *
32309921 TGGTTTAGCTCTTATGAGCATTGGTGTGATGGT
1 TGGATTAGCTCTGATGAGCATTGGTATGATGGA
* * *
32309954 TGGTTTAGCTCTTATAAGCATTGGTATGATGGA
1 TGGATTAGCTCTGATGAGCATTGGTATGATGGA
*
32309987 TGGATTGGCTC-GAGTGAGCATT
1 TGGATTAGCTCTGA-TGAGCATT
32310009 TGGTGTGTTT
Statistics
Matches: 76, Mismatches: 11, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
32 1 0.01
33 75 0.99
ACGTcount: A:0.20, C:0.09, G:0.31, T:0.40
Consensus pattern (33 bp):
TGGATTAGCTCTGATGAGCATTGGTATGATGGA
Found at i:32310197 original size:20 final size:20
Alignment explanation
Indices: 32310172--32310212 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
32310162 ATGACAGGAA
**
32310172 ACTTTTAGGGTTGTTATATT
1 ACTTTTAGAATTGTTATATT
*
32310192 ACTTTTTGAATTGTTATATT
1 ACTTTTAGAATTGTTATATT
32310212 A
1 A
32310213 ATTTCAGTAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.24, C:0.05, G:0.15, T:0.56
Consensus pattern (20 bp):
ACTTTTAGAATTGTTATATT
Found at i:32316962 original size:40 final size:40
Alignment explanation
Indices: 32316879--32316980 Score: 123
Period size: 40 Copynumber: 2.5 Consensus size: 40
32316869 TAGTGGCTAC
* * **
32316879 ATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATTCT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAATCATGAT
* *
32316919 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGTGAT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAATCATGAT
* * *
32316959 ATCCGGGTTAAGTCCCGTAGGC
1 ATCCGGGCTAAGACCCGAAGGC
32316981 CTTGGTGCGG
Statistics
Matches: 53, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 53 1.00
ACGTcount: A:0.24, C:0.25, G:0.28, T:0.23
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAATCATGAT
Found at i:32326227 original size:40 final size:39
Alignment explanation
Indices: 32326062--32326245 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
32326052 AAATTGAATG
* * *
32326062 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
32326102 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
32326142 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
32326182 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
32326221 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
32326246 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:32326270 original size:80 final size:81
Alignment explanation
Indices: 32326102--32326290 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
32326092 GCTGGAAATT
* * * *
32326102 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
32326167 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
32326183 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
32326246 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
32326262 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
32326291 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:32329396 original size:13 final size:13
Alignment explanation
Indices: 32329378--32329403 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
32329368 GCAAAAAGGA
32329378 TAATTTAGCATGT
1 TAATTTAGCATGT
32329391 TAATTTAGCATGT
1 TAATTTAGCATGT
32329404 ACTAAATCGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.08, G:0.15, T:0.46
Consensus pattern (13 bp):
TAATTTAGCATGT
Found at i:32329939 original size:13 final size:13
Alignment explanation
Indices: 32329917--32329951 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
32329907 AAGTAATTCA
*
32329917 ACACAAGTGGGAC
1 ACACAGGTGGGAC
*
32329930 ACACGGGTGGGAC
1 ACACAGGTGGGAC
32329943 ACACAGGTG
1 ACACAGGTG
32329952 TGTCCCTAAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.31, C:0.23, G:0.37, T:0.09
Consensus pattern (13 bp):
ACACAGGTGGGAC
Found at i:32330477 original size:43 final size:42
Alignment explanation
Indices: 32330416--32330525 Score: 132
Period size: 43 Copynumber: 2.6 Consensus size: 42
32330406 CAACGCCAAC
* *
32330416 ATCCCAGACGTGGTCTTACATGTAATCAAATATTGATG-CCACT
1 ATCCCAGACATGGTCTTACATGTAATCAAATA-AGATGTCCA-T
* * *
32330459 ATCCCAGACAAGGTCTTACATGAAATCAAATAAGATGTCGAT
1 ATCCCAGACATGGTCTTACATGTAATCAAATAAGATGTCCAT
* *
32330501 GTCCCAGACATGGTCTTACACGTAA
1 ATCCCAGACATGGTCTTACATGTAA
32330526 ATCTCAAATC
Statistics
Matches: 57, Mismatches: 9, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
42 26 0.46
43 31 0.54
ACGTcount: A:0.34, C:0.23, G:0.17, T:0.26
Consensus pattern (42 bp):
ATCCCAGACATGGTCTTACATGTAATCAAATAAGATGTCCAT
Found at i:32330528 original size:43 final size:42
Alignment explanation
Indices: 32330417--32330565 Score: 124
Period size: 43 Copynumber: 3.5 Consensus size: 42
32330407 AACGCCAACA
* * * * *
32330417 TCCCAGACGTGGTCTTACATGT-AATCAAATATTGATGCCACTA
1 TCCCAGACATGGTCTTACACGTAAATCAAATA-AGATG-CAATG
* * *
32330460 TCCCAGACAAGGTCTTACATG-AAATCAAATAAGATGTCGATG
1 TCCCAGACATGGTCTTACACGTAAATCAAATAAGATG-CAATG
*
32330502 TCCCAGACATGGTCTTACACGTAAATCTCAAAT-CGATGCCAATG
1 TCCCAGACATGGTCTTACACGTAAA--TCAAATAAGATG-CAATG
* *
32330546 TCCTAGACGTGGTCTTACAC
1 TCCCAGACATGGTCTTACAC
32330566 AAAATCACAT
Statistics
Matches: 88, Mismatches: 14, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
42 25 0.28
43 31 0.35
44 26 0.30
45 6 0.07
ACGTcount: A:0.32, C:0.24, G:0.17, T:0.27
Consensus pattern (42 bp):
TCCCAGACATGGTCTTACACGTAAATCAAATAAGATGCAATG
Found at i:32333199 original size:34 final size:34
Alignment explanation
Indices: 32333150--32333220 Score: 124
Period size: 34 Copynumber: 2.1 Consensus size: 34
32333140 ATTTAAAATG
*
32333150 CAAAATGCAAAAAGTAAGCTATGTTTATGTGTTT
1 CAAAATACAAAAAGTAAGCTATGTTTATGTGTTT
*
32333184 CAAAATACAACAAGTAAGCTATGTTTATGTGTTT
1 CAAAATACAAAAAGTAAGCTATGTTTATGTGTTT
32333218 CAA
1 CAA
32333221 TTCAATAGTA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.39, C:0.11, G:0.15, T:0.34
Consensus pattern (34 bp):
CAAAATACAAAAAGTAAGCTATGTTTATGTGTTT
Found at i:32335886 original size:32 final size:34
Alignment explanation
Indices: 32335826--32335898 Score: 100
Period size: 32 Copynumber: 2.2 Consensus size: 34
32335816 AGGGGTGTTA
32335826 CATTTCACATCTCAATACATCATTTCATATC-T-
1 CATTTCACATCTCAATACATCATTTCATATCTTC
32335858 CATTTCACATCTC-ATA-ATCATTTCTCATATCTTC
1 CATTTCACATCTCAATACATCA-TT-TCATATCTTC
32335892 CATTTCA
1 CATTTCA
32335899 ATATTTTCTC
Statistics
Matches: 37, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
30 4 0.11
31 5 0.14
32 20 0.54
33 1 0.03
34 7 0.19
ACGTcount: A:0.29, C:0.29, G:0.00, T:0.42
Consensus pattern (34 bp):
CATTTCACATCTCAATACATCATTTCATATCTTC
Found at i:32338804 original size:28 final size:27
Alignment explanation
Indices: 32338741--32338810 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
32338731 ATAGTGAGTC
*
32338741 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
*
32338768 CGCACACTTAGTGCTACATGATCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
32338796 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
32338811 GTACAAGTTT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 21 0.52
28 19 0.47
ACGTcount: A:0.30, C:0.29, G:0.14, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:32346668 original size:28 final size:27
Alignment explanation
Indices: 32346605--32346674 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
32346595 ATAGTGAGTC
*
32346605 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
*
32346632 CGCACACTTAGTGCTACATGATCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
32346660 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
32346675 GTACAAGTTT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 21 0.52
28 19 0.47
ACGTcount: A:0.30, C:0.29, G:0.14, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:32350924 original size:26 final size:26
Alignment explanation
Indices: 32350859--32350918 Score: 111
Period size: 26 Copynumber: 2.3 Consensus size: 26
32350849 AATTCGATCA
*
32350859 TTTACCCTCAAGGGCAAAATAGTCAT
1 TTTACCCTCAAGGGCAAAACAGTCAT
32350885 TTTACCCTCAAGGGCAAAACAGTCAT
1 TTTACCCTCAAGGGCAAAACAGTCAT
32350911 TTTACCCT
1 TTTACCCT
32350919 ACAGGGGTAT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 33 1.00
ACGTcount: A:0.32, C:0.27, G:0.13, T:0.28
Consensus pattern (26 bp):
TTTACCCTCAAGGGCAAAACAGTCAT
Found at i:32350947 original size:27 final size:27
Alignment explanation
Indices: 32350906--32350982 Score: 91
Period size: 27 Copynumber: 2.9 Consensus size: 27
32350896 GGGCAAAACA
* *
32350906 GTCATTTTACCCTACAGGGGTATGTCG
1 GTCATTTTACACTACAAGGGTATGTCG
* * * *
32350933 GTCATTTTACACTACAACGATATTTTG
1 GTCATTTTACACTACAAGGGTATGTCG
*
32350960 GTAATTTTACACTACAAGGGTAT
1 GTCATTTTACACTACAAGGGTAT
32350983 TTTGATAATT
Statistics
Matches: 41, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 41 1.00
ACGTcount: A:0.27, C:0.18, G:0.18, T:0.36
Consensus pattern (27 bp):
GTCATTTTACACTACAAGGGTATGTCG
Found at i:32350983 original size:27 final size:27
Alignment explanation
Indices: 32350953--32351269 Score: 291
Period size: 27 Copynumber: 11.5 Consensus size: 27
32350943 ACTACAACGA
* *
32350953 TATTTTGGTAATTTTAC-ACTACAAGGG
1 TATTTCGGTAATTTTACAAAT-CAAGGG
* * * *
32350980 TATTTTGATAATTTAACAAATCAGGGG
1 TATTTCGGTAATTTTACAAATCAAGGG
*
32351007 TATTTCAGTAATTTTACAAATCAAGGG
1 TATTTCGGTAATTTTACAAATCAAGGG
* *
32351034 TATTTCAGTAATTTTACAAATCGAGGG
1 TATTTCGGTAATTTTACAAATCAAGGG
*
32351061 TATTTCGGTAATTTTACAAATTGTAAAATTAAGGG
1 TATTTCGGTAATTTTAC--------AAATCAAGGG
* *
32351096 TATTTCGATAATTTTA-AAATCGAGGG
1 TATTTCGGTAATTTTACAAATCAAGGG
* * * *
32351122 TGTTTCGGTAATTTCAAAAATCGAGGG
1 TATTTCGGTAATTTTACAAATCAAGGG
*
32351149 TATTTCGGTAATTTTACAAATAAAGGG
1 TATTTCGGTAATTTTACAAATCAAGGG
*** * *
32351176 TATTTTAATAA-TTT-CATAATCGAGGA
1 TATTTCGGTAATTTTACA-AATCAAGGG
*
32351202 CATTTCGGTAATTTTACAAATCAAGGG
1 TATTTCGGTAATTTTACAAATCAAGGG
*
32351229 TATTTCGGTAATTTTACAAATCAAGAG
1 TATTTCGGTAATTTTACAAATCAAGGG
*
32351256 TATTTCAGTAATTT
1 TATTTCGGTAATTT
32351270 CTCTTTATTA
Statistics
Matches: 238, Mismatches: 39, Indels: 26
0.79 0.13 0.09
Matches are distributed among these distances:
25 2 0.01
26 37 0.16
27 172 0.72
28 4 0.02
35 23 0.10
ACGTcount: A:0.35, C:0.09, G:0.17, T:0.38
Consensus pattern (27 bp):
TATTTCGGTAATTTTACAAATCAAGGG
Found at i:32351188 original size:115 final size:116
Alignment explanation
Indices: 32350975--32351189 Score: 290
Period size: 115 Copynumber: 1.9 Consensus size: 116
32350965 TTTACACTAC
* * *
32350975 AAGGGTATTTTGATAATTTAACAAATCAGGGGTATTTCAGTAATTTTACAAATCAAGGGTATTTC
1 AAGGGTATTTCGATAATTTAACAAATCAGGGGTATTTCAGTAATTTCAAAAATCAAGGGTATTTC
** **
32351040 AGTAATTTTACAAATCGAGGGTATTTCGGTAATTTTACAAATTGTAAAATT
66 AGTAATTTTACAAATAAAGGGTATTTCAATAATTTTACAAATTGTAAAATT
* * * *
32351091 AAGGGTATTTCGATAATTTTA-AAATC-GAGGGTGTTTCGGTAATTTCAAAAATCGAGGGTATTT
1 AAGGGTATTTCGATAATTTAACAAATCAG-GGGTATTTCAGTAATTTCAAAAATCAAGGGTATTT
* *
32351154 CGGTAATTTTACAAATAAAGGGTATTTTAATAATTT
65 CAGTAATTTTACAAATAAAGGGTATTTCAATAATTT
32351190 CATAATCGAG
Statistics
Matches: 85, Mismatches: 13, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
114 1 0.01
115 65 0.76
116 19 0.22
ACGTcount: A:0.35, C:0.08, G:0.19, T:0.38
Consensus pattern (116 bp):
AAGGGTATTTCGATAATTTAACAAATCAGGGGTATTTCAGTAATTTCAAAAATCAAGGGTATTTC
AGTAATTTTACAAATAAAGGGTATTTCAATAATTTTACAAATTGTAAAATT
Found at i:32351197 original size:53 final size:54
Alignment explanation
Indices: 32351092--32351269 Score: 189
Period size: 53 Copynumber: 3.3 Consensus size: 54
32351082 TGTAAAATTA
* * * **
32351092 AGGGTATTTCGATAATTTTA-AAATCGAGGGTGTTTCGGTAATTTCAAAAATCG
1 AGGGTATTTCGGTAATTTTACAAATCAAGGGTATTTCAATAATTTCAAAAATCG
* * *
32351145 AGGGTATTTCGGTAATTTTACAAATAAAGGGTATTTTAATAATTTC-ATAATCG
1 AGGGTATTTCGGTAATTTTACAAATCAAGGGTATTTCAATAATTTCAAAAATCG
** ** * * *
32351198 AGGACATTTCGGTAATTTTACAAATCAAGGGTATTTCGGTAATTTTACAAATCA
1 AGGGTATTTCGGTAATTTTACAAATCAAGGGTATTTCAATAATTTCAAAAATCG
* *
32351252 AGAGTATTTCAGTAATTT
1 AGGGTATTTCGGTAATTT
32351270 CTCTTTATTA
Statistics
Matches: 101, Mismatches: 22, Indels: 3
0.80 0.17 0.02
Matches are distributed among these distances:
53 64 0.63
54 37 0.37
ACGTcount: A:0.34, C:0.10, G:0.19, T:0.38
Consensus pattern (54 bp):
AGGGTATTTCGGTAATTTTACAAATCAAGGGTATTTCAATAATTTCAAAAATCG
Found at i:32351229 original size:80 final size:80
Alignment explanation
Indices: 32351086--32351270 Score: 244
Period size: 80 Copynumber: 2.3 Consensus size: 80
32351076 ACAAATTGTA
* * * *** *
32351086 AAATTAAGGGTATTTCGATAATTTTAAAATCGAGGGTGTTTCGGTAATTTCAAAAATCGAGGGTA
1 AAATAAAGGGTATTTCAATAATTTCAAAATCGAGGACATTTCGGTAATTTCAAAAATCAAGGGTA
32351151 TTTCGGTAATTTTAC
66 TTTCGGTAATTTTAC
* * * *
32351166 AAATAAAGGGTATTTTAATAATTTCATAATCGAGGACATTTCGGTAATTTTACAAATCAAGGGTA
1 AAATAAAGGGTATTTCAATAATTTCAAAATCGAGGACATTTCGGTAATTTCAAAAATCAAGGGTA
32351231 TTTCGGTAATTTTAC
66 TTTCGGTAATTTTAC
* * *
32351246 AAATCAAGAGTATTTCAGTAATTTC
1 AAATAAAGGGTATTTCAATAATTTC
32351271 TCTTTATTAC
Statistics
Matches: 90, Mismatches: 15, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
80 90 1.00
ACGTcount: A:0.35, C:0.10, G:0.18, T:0.37
Consensus pattern (80 bp):
AAATAAAGGGTATTTCAATAATTTCAAAATCGAGGACATTTCGGTAATTTCAAAAATCAAGGGTA
TTTCGGTAATTTTAC
Found at i:32351621 original size:28 final size:28
Alignment explanation
Indices: 32351580--32351651 Score: 135
Period size: 28 Copynumber: 2.6 Consensus size: 28
32351570 TTCATTTGGC
*
32351580 CCCATCAGGACCAATCTCGTTCACATGG
1 CCCATCAGGCCCAATCTCGTTCACATGG
32351608 CCCATCAGGCCCAATCTCGTTCACATGG
1 CCCATCAGGCCCAATCTCGTTCACATGG
32351636 CCCATCAGGCCCAATC
1 CCCATCAGGCCCAATC
32351652 ACTTCCCACC
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
28 43 1.00
ACGTcount: A:0.24, C:0.40, G:0.17, T:0.19
Consensus pattern (28 bp):
CCCATCAGGCCCAATCTCGTTCACATGG
Found at i:32357182 original size:48 final size:48
Alignment explanation
Indices: 32357109--32357431 Score: 319
Period size: 48 Copynumber: 6.7 Consensus size: 48
32357099 TATGAGAGCT
* *
32357109 AGTGTAAGACCACGTCTAGG-ACATGGCATCGGCCTCGATATGTAAGCC
1 AGTGTAAGACCATGT-TTGGAACATGGCATCGGCCTCGATATGTAAGCC
* * ** *
32357157 AATGTAAGACCATGTTTGGAACATGGCATCGGCATTTATATG-AGAGCT
1 AGTGTAAGACCATGTTTGGAACATGGCATCGGCCTCGATATGTA-AGCC
* * * *
32357205 AGTGTAAGACCATGTCTGGGACATGGCATCAGCCTCGATATGTGAGCC
1 AGTGTAAGACCATGTTTGGAACATGGCATCGGCCTCGATATGTAAGCC
* * * * ** * *
32357253 AATGTAAGACCATGCTTGGAACATGGCATTGGCATATATATGAAAGCT
1 AGTGTAAGACCATGTTTGGAACATGGCATCGGCCTCGATATGTAAGCC
* * * ** *
32357301 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGACATGTGGGCT
1 AGTGTAAGACCATGTTTGGAACATGGCATCGGCCTCGATATGTAAGCC
* *
32357349 AGTGTAAGACCATGTTTGGAACATGGCATCGACAC-CGATATATGAGAGCC
1 AGTGTAAGACCATGTTTGGAACATGGCATCGGC-CTCGATATGT-A-AGCC
* *
32357399 AGTGTAAGACCATGTCTGGGACATGGCATCGGC
1 AGTGTAAGACCATGTTTGGAACATGGCATCGGC
32357432 ATCTTACCCT
Statistics
Matches: 218, Mismatches: 51, Indels: 10
0.78 0.18 0.04
Matches are distributed among these distances:
47 4 0.02
48 181 0.83
49 1 0.00
50 32 0.15
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (48 bp):
AGTGTAAGACCATGTTTGGAACATGGCATCGGCCTCGATATGTAAGCC
Found at i:32357263 original size:96 final size:96
Alignment explanation
Indices: 32357099--32357431 Score: 513
Period size: 96 Copynumber: 3.4 Consensus size: 96
32357089 ATACTATGGT
* * *
32357099 TATGAGAGCTAGTGTAAGACCACGTCTAGGACATGGCATCGGCCTCGATATGTAAGCCAATGTAA
1 TATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATATGTGAGCCAATGTAA
*
32357164 GACCATGTTTGGAACATGGCATCGGCATTTA
66 GACCATGTTTGGAACATGGCATCGGCATATA
*
32357195 TATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCTCGATATGTGAGCCAATGTAA
1 TATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATATGTGAGCCAATGTAA
* *
32357260 GACCATGCTTGGAACATGGCATTGGCATATA
66 GACCATGTTTGGAACATGGCATCGGCATATA
* * * * *
32357291 TATGAAAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGACATGTGGGCTAGTGTAA
1 TATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATATGTGAGCCAATGTAA
* *
32357356 GACCATGTTTGGAACATGGCATCGACACCGATA
66 GACCATGTTTGGAACATGGCATCGGCA--TATA
*
32357389 TATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC
1 TATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGC
32357432 ATCTTACCCT
Statistics
Matches: 216, Mismatches: 19, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
96 172 0.80
98 44 0.20
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (96 bp):
TATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATATGTGAGCCAATGTAA
GACCATGTTTGGAACATGGCATCGGCATATA
Found at i:32357373 original size:144 final size:145
Alignment explanation
Indices: 32357099--32357433 Score: 383
Period size: 144 Copynumber: 2.3 Consensus size: 145
32357089 ATACTATGGT
* * * * ** * * *
32357099 TATGAGAGCTAGTGTAAGACCACGTCTAGG-ACATGGCATCGGCCTCGATATGTAAGCCAATGTA
1 TATGAGAGCCAATGTAAGACCATGTCT-GGAACATGGCATCGGCATATATATGAAAGCTAGTGTA
* ** * *
32357163 AGACCATGTTTGGAACATGGCATCGGCATTTATATGAGAGCTAGTGTAAGACCATGTCTGGGACA
65 AGACCATGTCTGGAACATGGCATCGGCATCGACATGAGAGCTAGTGTAAGACCATGTCTGGAACA
32357228 TGGCATC-AGC-CTCG-A
130 TGGCATCGA-CAC-CGAA
* *
32357243 TATGTGAGCCAATGTAAGACCATG-CTTGGAACATGGCATTGGCATATATATGAAAGCTAGTGTA
1 TATGAGAGCCAATGTAAGACCATGTC-TGGAACATGGCATCGGCATATATATGAAAGCTAGTGTA
* * * * *
32357307 AGACCATGTCTGGGACATGGCATCGGCCTCGACATGTGGGCTAGTGTAAGACCATGTTTGGAACA
65 AGACCATGTCTGGAACATGGCATCGGCATCGACATGAGAGCTAGTGTAAGACCATGTCTGGAACA
32357372 TGGCATCGACACCGATA
130 TGGCATCGACACCGA-A
* *
32357389 TATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCAT
1 TATGAGAGCCAATGTAAGACCATGTCTGGAACATGGCATCGGCAT
32357434 CTTACCCTTT
Statistics
Matches: 159, Mismatches: 25, Indels: 12
0.81 0.13 0.06
Matches are distributed among these distances:
143 3 0.02
144 113 0.71
145 2 0.01
146 40 0.25
147 1 0.01
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (145 bp):
TATGAGAGCCAATGTAAGACCATGTCTGGAACATGGCATCGGCATATATATGAAAGCTAGTGTAA
GACCATGTCTGGAACATGGCATCGGCATCGACATGAGAGCTAGTGTAAGACCATGTCTGGAACAT
GGCATCGACACCGAA
Found at i:32365818 original size:2 final size:2
Alignment explanation
Indices: 32365811--32365847 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
32365801 GAGACTAGTC
32365811 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
32365848 CATGTCATGA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:32375682 original size:352 final size:352
Alignment explanation
Indices: 32375030--32375733 Score: 1212
Period size: 352 Copynumber: 2.0 Consensus size: 352
32375020 ATCTCCAACA
* *
32375030 ATCTCCGATCCGAGTTAGCTTGGCGACACTATAAAACATGGAAAATAAACGGAGTAAGCTATATA
1 ATCTCCGATCCGAGTTAACTTGGCGACACTATAAAACATGGAAAATAAACGGAGTAAGATATATA
32375095 GCTTAGTAAGCTCGTATGCAAGAAATAAGCAAACCTTACCATACATATAACATTCAAATAAATGT
66 GCTTAGTAAGCTCGTATGCAAGAAATAAGCAAACCTTACCATACATATAACATTCAAATAAATGT
* *
32375160 AAATTTACCATAGTCTCATGATCATAACTTATTCCACCATAAAACTTACCTCATATTCATCCTTT
131 AAATTTACCATAGTCTCATGATCATAACTCATTCCACCACAAAACTTACCTCATATTCATCCTTT
32375225 CAAGAATTTAACAAACATGGGCTTTATGTACATACCTGAACCATCTCGAAATGACTTTACACATA
196 CAAGAATTTAACAAACATGGGCTTTATGTACATACCTGAACCATCTCGAAATGACTTTACACATA
* * * *
32375290 TTCTCATCTTTGACATACCCGTGAACCACTCAGAATAATAATGCCGGATACTCGAGATTTTTTCA
261 TTCTCATCTTTAACATACCCGTGAACCACTCAGAATAATAATGCCGAATACTCAAGATTTTTGCA
* *
32375355 CACTAAGTTCCACATATGTAGCCAATG
326 CACTAAGTGCCACATACGTAGCCAATG
* *
32375382 ATCTCCGATCTGAGTTAACTTGGCGACACTATAAAACATGGAAAATAAATGGAGTAAGATATATA
1 ATCTCCGATCCGAGTTAACTTGGCGACACTATAAAACATGGAAAATAAACGGAGTAAGATATATA
* *
32375447 GCTTAGTAAGCTCGTATGCAAGAAATAAGTAAATCTTACCATACATATAACATTCAAATAAATGT
66 GCTTAGTAAGCTCGTATGCAAGAAATAAGCAAACCTTACCATACATATAACATTCAAATAAATGT
* *
32375512 AAATTTACCATAGTCTCATGATCATAACTCATTCTACCACAAAACTTACCTCATATTCATCGTTT
131 AAATTTACCATAGTCTCATGATCATAACTCATTCCACCACAAAACTTACCTCATATTCATCCTTT
32375577 CAA-ACATTTAACAAACATGGGCTTTATGTACATACCTGAACCATCTCGAAATGACTTTACACAT
196 CAAGA-ATTTAACAAACATGGGCTTTATGTACATACCTGAACCATCTCGAAATGACTTTACACAT
** *
32375641 ATTCTCATCTTTAACATACCCGTGAACCACTCATTATAATAATGTCGAATACTCAAGATTTTTGC
260 ATTCTCATCTTTAACATACCCGTGAACCACTCAGAATAATAATGCCGAATACTCAAGATTTTTGC
*
32375706 ACACTAAGTGCCACATACGTAGCTAATG
325 ACACTAAGTGCCACATACGTAGCCAATG
32375734 TTACCTCAAT
Statistics
Matches: 331, Mismatches: 20, Indels: 2
0.94 0.06 0.01
Matches are distributed among these distances:
351 1 0.00
352 330 1.00
ACGTcount: A:0.37, C:0.21, G:0.12, T:0.30
Consensus pattern (352 bp):
ATCTCCGATCCGAGTTAACTTGGCGACACTATAAAACATGGAAAATAAACGGAGTAAGATATATA
GCTTAGTAAGCTCGTATGCAAGAAATAAGCAAACCTTACCATACATATAACATTCAAATAAATGT
AAATTTACCATAGTCTCATGATCATAACTCATTCCACCACAAAACTTACCTCATATTCATCCTTT
CAAGAATTTAACAAACATGGGCTTTATGTACATACCTGAACCATCTCGAAATGACTTTACACATA
TTCTCATCTTTAACATACCCGTGAACCACTCAGAATAATAATGCCGAATACTCAAGATTTTTGCA
CACTAAGTGCCACATACGTAGCCAATG
Found at i:32380116 original size:79 final size:82
Alignment explanation
Indices: 32379976--32380160 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
32379966 TCGAATGATG
* * *
32379976 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
*
32380040 CGTGCGAGTTAATA-AA
66 CGTGCGAGTCAATATAA
* **
32380056 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCAT
*
32380118 TCGTGCGAGTCACTATAA
65 TCGTGCGAGTCAATATAA
**
32380136 -CCGGGCTTCGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
32380161 AGCGAGTCGT
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 56 0.62
80 34 0.37
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (82 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTCAATATAA
Found at i:32380168 original size:40 final size:40
Alignment explanation
Indices: 32379977--32380168 Score: 151
Period size: 40 Copynumber: 4.8 Consensus size: 40
32379967 CGAATGATGT
* * * * *
32379977 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTCACTAAAC
** * * * * *
32380017 CCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATAAAT
1 CCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTCACTAAAC
* * *
32380057 CCGGGCTAAG-CCCGAAGGCATTTGTGCAAGTTACTAAAC
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAAC
*
32380096 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCACTATAA-
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTA-AAC
* *
32380136 CCGGGCTT-CGTCCCGAAGGCATTTGAGCGAGTC
1 CCGGG-TTAAGTCCCGAAGGCATTTGTGCGAGTC
32380169 GTTATATCCG
Statistics
Matches: 126, Mismatches: 20, Indels: 12
0.80 0.13 0.08
Matches are distributed among these distances:
39 33 0.26
40 82 0.65
41 11 0.09
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.23
Consensus pattern (40 bp):
CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAAC
Found at i:32391838 original size:40 final size:40
Alignment explanation
Indices: 32391782--32391932 Score: 139
Period size: 40 Copynumber: 3.8 Consensus size: 40
32391772 TCGGAATTAA
* * *
32391782 CCGGATATAATGACTCGCTCAAATGCCTTCGGGAC-GAAGC
1 CCGGTTATAGTGACTCGCACAAATGCCTTCGGGACTGAA-C
* *
32391822 CCGGTTATAGTGACTCGCACGAATGCCTTCGGGACTTAAC
1 CCGGTTATAGTGACTCGCACAAATGCCTTCGGGACTGAAC
* * * *
32391862 CCGGGTT-TAGTAACTTGCACAAATGCCTTCGGG-CTTAGC
1 CC-GGTTATAGTGACTCGCACAAATGCCTTCGGGACTGAAC
* * *
32391901 CCGGATT-TATTAACTCGCACGAATGCCTTCGG
1 CCGG-TTATAGTGACTCGCACAAATGCCTTCGG
32391933 ATCCTAGTCC
Statistics
Matches: 96, Mismatches: 12, Indels: 7
0.83 0.10 0.06
Matches are distributed among these distances:
38 2 0.02
39 31 0.32
40 57 0.59
41 6 0.06
ACGTcount: A:0.23, C:0.27, G:0.25, T:0.25
Consensus pattern (40 bp):
CCGGTTATAGTGACTCGCACAAATGCCTTCGGGACTGAAC
Found at i:32391917 original size:79 final size:81
Alignment explanation
Indices: 32391801--32391983 Score: 223
Period size: 79 Copynumber: 2.3 Consensus size: 81
32391791 ATGACTCGCT
** * *
32391801 CAAATGCCTTCGGGACGAAGCCCGGTTATAGTGACTCGCACGAATGCCTTCGGGA-CTTAACCCG
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACGAATGCCTTC-GGATCCTAACCCG
* *
32391865 GGTTTAGTAACTT-GCA
65 GATATAGTAACTTAGCA
* **
32391881 CAAATGCCTTCGGG-CTTAGCCCGGATT-TATTAACTCGCACGAATGCCTTCGGATCCTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAACTCGCACGAATGCCTTCGGATCCTAACCCG
*
32391944 GATATAGTCACTTAGCA
65 GATATAGTAACTTAGCA
32391961 CAAA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGACTTAGCCCG
32391984 ACATCATTCG
Statistics
Matches: 89, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.61
80 32 0.36
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.25
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACGAATGCCTTCGGATCCTAACCCGG
ATATAGTAACTTAGCA
Found at i:32393971 original size:40 final size:39
Alignment explanation
Indices: 32393806--32393989 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
32393796 AAATTGAATG
* * *
32393806 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
32393846 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
32393886 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
32393926 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
32393965 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
32393990 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:32394014 original size:80 final size:81
Alignment explanation
Indices: 32393846--32394034 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
32393836 GCTGGAAATT
* * * *
32393846 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
32393911 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
32393927 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
32393990 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
32394006 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
32394035 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:32402057 original size:40 final size:39
Alignment explanation
Indices: 32401892--32402075 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
32401882 AAATTGAATG
* * *
32401892 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
32401932 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
32401972 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
32402012 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
32402051 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
32402076 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:32402100 original size:80 final size:81
Alignment explanation
Indices: 32401932--32402120 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
32401922 GCTGGAAATT
* * * *
32401932 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
32401997 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
32402013 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
32402076 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
32402092 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
32402121 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:32417374 original size:16 final size:15
Alignment explanation
Indices: 32417348--32417377 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
32417338 TTGGGTTAAA
32417348 AAATTATTTAATTAG
1 AAATTATTTAATTAG
32417363 AAATTAATTTAATTA
1 AAATT-ATTTAATTA
32417378 ATTAAAAATA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (15 bp):
AAATTATTTAATTAG
Found at i:32417475 original size:24 final size:24
Alignment explanation
Indices: 32417443--32417489 Score: 94
Period size: 24 Copynumber: 2.0 Consensus size: 24
32417433 ATATAAAGAG
32417443 TTGGGTCAATATCCAAGAAGCACT
1 TTGGGTCAATATCCAAGAAGCACT
32417467 TTGGGTCAATATCCAAGAAGCAC
1 TTGGGTCAATATCCAAGAAGCAC
32417490 ATATAATTTG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.34, C:0.21, G:0.21, T:0.23
Consensus pattern (24 bp):
TTGGGTCAATATCCAAGAAGCACT
Found at i:32419943 original size:13 final size:13
Alignment explanation
Indices: 32419925--32419959 Score: 70
Period size: 13 Copynumber: 2.7 Consensus size: 13
32419915 AGCATATAAG
32419925 TACAATTCAACCA
1 TACAATTCAACCA
32419938 TACAATTCAACCA
1 TACAATTCAACCA
32419951 TACAATTCA
1 TACAATTCA
32419960 TAACCAATTC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.46, C:0.29, G:0.00, T:0.26
Consensus pattern (13 bp):
TACAATTCAACCA
Found at i:32422306 original size:46 final size:45
Alignment explanation
Indices: 32422253--32422428 Score: 178
Period size: 46 Copynumber: 3.8 Consensus size: 45
32422243 TATTTGGGCA
32422253 TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAA-G
* *** * *
32422299 TCCGAACTCGTTGACTTGAGTCTGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCTGAGTTC-ACTTATG-GA-T-GCGAAG
*
32422346 TCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAA-G
* * *
32422392 -CTCGAGCTCTTTGAGTTGAGTCCGAGTTCACTTATGG
1 TC-CGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGG
32422429 GCGGGTTACA
Statistics
Matches: 107, Mismatches: 15, Indels: 16
0.78 0.11 0.12
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 2 0.02
46 65 0.61
47 31 0.29
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.21, C:0.19, G:0.28, T:0.31
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAAG
Found at i:32422411 original size:93 final size:93
Alignment explanation
Indices: 32422249--32422420 Score: 274
Period size: 93 Copynumber: 1.8 Consensus size: 93
32422239 AGGATATTTG
*
32422249 GGCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAC
1 GGCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAC
*
32422314 TTGAGTCTGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* * *
32422342 GGCATCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACG-CTCGAGCTCTTTGA
1 GGCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGTC-CGAACTCGTTGA
*
32422406 GTTGAGTCCGAGTTC
65 CTTGAGTCCGAGTTC
32422421 ACTTATGGGC
Statistics
Matches: 72, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
92 1 0.01
93 71 0.99
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.30
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAC
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:32431089 original size:29 final size:29
Alignment explanation
Indices: 32430971--32431117 Score: 122
Period size: 29 Copynumber: 5.1 Consensus size: 29
32430961 ACATACATGC
* *
32430971 ATATGGCCCACTT-GGCCC-AATCTCATTT
1 ATATGGCCCA-TTAGGCCCAAATCACCTTT
* * * *
32430999 ATATGGTCCATCAGGCCCAATTCACAC-TC
1 ATATGGCCCATTAGGCCCAAATCAC-CTTT
* * * ** *
32431028 ATATGGCTCATCAGGCCCAATTCATATTC
1 ATATGGCCCATTAGGCCCAAATCACCTTT
32431057 ATATGGCCCATTAGGCCCAAATCACCTTT
1 ATATGGCCCATTAGGCCCAAATCACCTTT
* *
32431086 ATATGGCCCGTTAGGCCCAAATTACC-TT
1 ATATGGCCCATTAGGCCCAAATCACCTTT
32431114 ATAT
1 ATAT
32431118 TCATGCTCAC
Statistics
Matches: 97, Mismatches: 18, Indels: 8
0.79 0.15 0.07
Matches are distributed among these distances:
27 1 0.01
28 20 0.21
29 76 0.78
ACGTcount: A:0.27, C:0.30, G:0.14, T:0.29
Consensus pattern (29 bp):
ATATGGCCCATTAGGCCCAAATCACCTTT
Found at i:32431102 original size:58 final size:57
Alignment explanation
Indices: 32430970--32431105 Score: 152
Period size: 58 Copynumber: 2.4 Consensus size: 57
32430960 TACATACATG
* *
32430970 CATATGGCCCACTT-GGCCCAATCTCATTTATATGGTCCATCAGGCCCAATTCACACT
1 CATATGGCCCA-TTAGGCCCAATCTCATTTATATGGCCCATCAGGCCCAAATCACACT
* * *
32431027 CATATGGCTCATCAGGCCCAAT-TCATATTCATATGGCCCATTAGGCCCAAATCAC-CTT
1 CATATGGCCCATTAGGCCCAATCTCAT-TT-ATATGGCCCATCAGGCCCAAATCACAC-T
* *
32431085 TATATGGCCCGTTAGGCCCAA
1 CATATGGCCCATTAGGCCCAA
32431106 ATTACCTTAT
Statistics
Matches: 66, Mismatches: 9, Indels: 7
0.80 0.11 0.09
Matches are distributed among these distances:
56 5 0.08
57 21 0.32
58 40 0.61
ACGTcount: A:0.26, C:0.32, G:0.15, T:0.27
Consensus pattern (57 bp):
CATATGGCCCATTAGGCCCAATCTCATTTATATGGCCCATCAGGCCCAAATCACACT
Found at i:32431992 original size:26 final size:26
Alignment explanation
Indices: 32431962--32432016 Score: 110
Period size: 26 Copynumber: 2.1 Consensus size: 26
32431952 TCGGCTAAGC
32431962 GAAACAAAGAAAATTATGTAGAGAAA
1 GAAACAAAGAAAATTATGTAGAGAAA
32431988 GAAACAAAGAAAATTATGTAGAGAAA
1 GAAACAAAGAAAATTATGTAGAGAAA
32432014 GAA
1 GAA
32432017 TAGAAATCGG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.62, C:0.04, G:0.20, T:0.15
Consensus pattern (26 bp):
GAAACAAAGAAAATTATGTAGAGAAA
Found at i:32432092 original size:22 final size:23
Alignment explanation
Indices: 32432049--32432093 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
32432039 AGAGTAAAAT
* **
32432049 AAAAGGGTTTTCGGCTTTTAGGG
1 AAAAGGGTTTCCGGCTAATAGGG
32432072 AAAAGGGTTTCCGG-TAATAGGG
1 AAAAGGGTTTCCGGCTAATAGGG
32432094 TGAAGAAAAT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
22 6 0.32
23 13 0.68
ACGTcount: A:0.27, C:0.09, G:0.36, T:0.29
Consensus pattern (23 bp):
AAAAGGGTTTCCGGCTAATAGGG
Found at i:32436272 original size:44 final size:44
Alignment explanation
Indices: 32436223--32436306 Score: 132
Period size: 44 Copynumber: 1.9 Consensus size: 44
32436213 CCAAAACATG
* *
32436223 TGTCATACATATCACGAACTCAGACACAACTCAATGAGTTTGGA
1 TGTCATACATATCACGAACTCAAACACAACTCAATAAGTTTGGA
* *
32436267 TGTCATATATATCATGAACTCAAACACAACTCAATAAGTT
1 TGTCATACATATCACGAACTCAAACACAACTCAATAAGTT
32436307 CAGATTACAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
44 36 1.00
ACGTcount: A:0.39, C:0.21, G:0.12, T:0.27
Consensus pattern (44 bp):
TGTCATACATATCACGAACTCAAACACAACTCAATAAGTTTGGA
Found at i:32444647 original size:70 final size:71
Alignment explanation
Indices: 32444496--32444658 Score: 310
Period size: 70 Copynumber: 2.3 Consensus size: 71
32444486 GAGATGTATC
32444496 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
32444561 AGGACA
66 AGGACA
32444567 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCT-GGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
*
32444631 CGGACA
66 AGGACA
32444637 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
32444659 AGACAAATCG
Statistics
Matches: 91, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
70 51 0.56
71 40 0.44
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:32452175 original size:70 final size:71
Alignment explanation
Indices: 32452024--32452186 Score: 310
Period size: 70 Copynumber: 2.3 Consensus size: 71
32452014 GAGATGTATC
32452024 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
32452089 AGGACA
66 AGGACA
32452095 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCT-GGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
*
32452159 CGGACA
66 AGGACA
32452165 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
32452187 AGACAAATCG
Statistics
Matches: 91, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
70 51 0.56
71 40 0.44
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:32469287 original size:30 final size:30
Alignment explanation
Indices: 32469232--32469391 Score: 213
Period size: 29 Copynumber: 5.5 Consensus size: 30
32469222 ATAGTGAATC
32469232 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
32469261 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
32469291 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
* *
32469320 CGCACACTTAGTGCTGTATAA---TCAAACT
1 CGCACACTTAGTGCTATATAATTTTC-AGCT
* * * * *
32469348 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAATTTTCAGCT
32469378 CGCACACTTAGTGC
1 CGCACACTTAGTGC
32469392 CAATCTTGTC
Statistics
Matches: 120, Mismatches: 5, Indels: 11
0.88 0.04 0.08
Matches are distributed among these distances:
27 2 0.02
28 23 0.19
29 47 0.39
30 47 0.39
31 1 0.01
ACGTcount: A:0.27, C:0.26, G:0.14, T:0.33
Consensus pattern (30 bp):
CGCACACTTAGTGCTATATAATTTTCAGCT
Found at i:32469324 original size:59 final size:57
Alignment explanation
Indices: 32469232--32469391 Score: 214
Period size: 59 Copynumber: 2.8 Consensus size: 57
32469222 ATAGTGAATC
*
32469232 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTC-AGCT
1 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAA---TCAAACT
*
32469291 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTGTATAATCAAACT
1 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATCAAACT
* * * * *
32469348 CGCACACTTAGTGCTGTACAATTTTAAACCCGCACACTTAGTGC
1 CGCACACTTAGTGCTATA-TATTTTCAGCTCGCACACTTAGTGC
32469392 CAATCTTGTC
Statistics
Matches: 92, Mismatches: 7, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
56 2 0.02
57 20 0.22
58 21 0.23
59 49 0.53
ACGTcount: A:0.27, C:0.26, G:0.14, T:0.33
Consensus pattern (57 bp):
CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATCAAACT
Found at i:32478788 original size:40 final size:40
Alignment explanation
Indices: 32478680--32478889 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
32478670 CGGGATTTAA
* * * * *
32478680 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
32478720 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
32478760 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
32478800 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
32478840 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
32478880 CCGGATATAT
1 CCGGATATAT
32478890 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:32486923 original size:40 final size:40
Alignment explanation
Indices: 32486815--32487024 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
32486805 CGGGATTTAA
* * * * *
32486815 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
32486855 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
32486895 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
32486935 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
32486975 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
32487015 CCGGATATAT
1 CCGGATATAT
32487025 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:32495616 original size:13 final size:13
Alignment explanation
Indices: 32495598--32495623 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
32495588 GGTATGATTC
32495598 TTTGAAAATTTTG
1 TTTGAAAATTTTG
32495611 TTTGAAAATTTTG
1 TTTGAAAATTTTG
32495624 ACGTTTAGGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.00, G:0.15, T:0.54
Consensus pattern (13 bp):
TTTGAAAATTTTG
Found at i:32498823 original size:43 final size:43
Alignment explanation
Indices: 32498747--32498869 Score: 160
Period size: 42 Copynumber: 2.9 Consensus size: 43
32498737 TCTGAACTCA
* * *
32498747 TTCACCGGCATT-TCGCTTGCTAGGCTTGAAGCCCGATATCAT
1 TTCACCGGCATTATAGCCTGCTAGGCCTGAAGCCCGATATCAT
* * *
32498789 TTCACCGGCATTATAGCCTGTTAGGCCCGAAGCCCGATATTAT
1 TTCACCGGCATTATAGCCTGCTAGGCCTGAAGCCCGATATCAT
* *
32498832 CTCACC-GTATTATAGCCTGCTAGGCCTGAAGCCCGATA
1 TTCACCGGCATTATAGCCTGCTAGGCCTGAAGCCCGATA
32498870 ATATTATTCA
Statistics
Matches: 70, Mismatches: 10, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
42 41 0.59
43 29 0.41
ACGTcount: A:0.22, C:0.29, G:0.21, T:0.28
Consensus pattern (43 bp):
TTCACCGGCATTATAGCCTGCTAGGCCTGAAGCCCGATATCAT
Found at i:32505980 original size:42 final size:42
Alignment explanation
Indices: 32505879--32506034 Score: 154
Period size: 43 Copynumber: 3.7 Consensus size: 42
32505869 TGTGTTATCC
* * * * *
32505879 TGTAAGACCACATCTAGGACGTTGGCATCAATTTGTGATTT-A
1 TGTAAGACCACATCTGGGACATTGGCATC-GTATATGATTTCA
**
32505921 CTGTAAGACCATGTCTGGGACATTGGCATCGTATATGATTTCA
1 -TGTAAGACCACATCTGGGACATTGGCATCGTATATGATTTCA
* * *
32505964 TGTAAGACC-CTATCTGGGACAGTGGCATCGATATTTGATTACA
1 TGTAAGACCAC-ATCTGGGACATTGGCATCG-TATATGATTTCA
* *
32506007 TGTAAGACCACGTCTGGGACGTTGGCAT
1 TGTAAGACCACATCTGGGACATTGGCAT
32506035 TGTACGAGCT
Statistics
Matches: 94, Mismatches: 15, Indels: 8
0.80 0.13 0.07
Matches are distributed among these distances:
42 34 0.36
43 59 0.63
44 1 0.01
ACGTcount: A:0.26, C:0.19, G:0.24, T:0.31
Consensus pattern (42 bp):
TGTAAGACCACATCTGGGACATTGGCATCGTATATGATTTCA
Found at i:32505992 original size:85 final size:85
Alignment explanation
Indices: 32505879--32506034 Score: 212
Period size: 85 Copynumber: 1.8 Consensus size: 85
32505869 TGTGTTATCC
*
32505879 TGTAAGACCACATCTAGGACGTTGGCATCAAT-TTGTGATTTAC-TGTAAGACCATGTCTGGGAC
1 TGTAAGACCACATCTAGGACGTTGGCATCAATATT-TGA-TTACATGTAAGACCACGTCTGGGAC
32505942 ATTGGCATCGTATATGATTTCA
64 ATTGGCATCGTATATGATTTCA
* *
32505964 TGTAAGACC-CTATCTGGGACAG-TGGCATCGATATTTGATTACATGTAAGACCACGTCTGGGAC
1 TGTAAGACCAC-ATCTAGGAC-GTTGGCATCAATATTTGATTACATGTAAGACCACGTCTGGGAC
*
32506027 GTTGGCAT
64 ATTGGCAT
32506035 TGTACGAGCT
Statistics
Matches: 63, Mismatches: 4, Indels: 8
0.84 0.05 0.11
Matches are distributed among these distances:
84 5 0.08
85 55 0.87
86 3 0.05
ACGTcount: A:0.26, C:0.19, G:0.24, T:0.31
Consensus pattern (85 bp):
TGTAAGACCACATCTAGGACGTTGGCATCAATATTTGATTACATGTAAGACCACGTCTGGGACAT
TGGCATCGTATATGATTTCA
Found at i:32515429 original size:24 final size:24
Alignment explanation
Indices: 32515397--32515481 Score: 161
Period size: 24 Copynumber: 3.5 Consensus size: 24
32515387 AATCTCAAAT
32515397 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
*
32515421 GCACTATGTGTGCGATTTACTATA
1 GCACTATGTGTGCGATTTACTATG
32515445 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
32515469 GCACTATGTGTGC
1 GCACTATGTGTGC
32515482 AACGTTTGGT
Statistics
Matches: 59, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 59 1.00
ACGTcount: A:0.21, C:0.18, G:0.25, T:0.36
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATG
Found at i:32521719 original size:13 final size:13
Alignment explanation
Indices: 32521701--32521725 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
32521691 CTTTCACATA
32521701 CATTTAATCATTT
1 CATTTAATCATTT
32521714 CATTTAATCATT
1 CATTTAATCATT
32521726 ATTCAATCTC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.00, T:0.52
Consensus pattern (13 bp):
CATTTAATCATTT
Found at i:32523688 original size:10 final size:9
Alignment explanation
Indices: 32523660--32523684 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
32523650 GCCCCTAATA
32523660 TTTCACATT
1 TTTCACATT
32523669 TTTCACATT
1 TTTCACATT
32523678 TTTCACA
1 TTTCACA
32523685 ATTTAGTCCT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.24, C:0.24, G:0.00, T:0.52
Consensus pattern (9 bp):
TTTCACATT
Found at i:32534457 original size:27 final size:27
Alignment explanation
Indices: 32534441--32534691 Score: 287
Period size: 27 Copynumber: 9.3 Consensus size: 27
32534431 CGACTTGTAA
32534441 AATTACCATTTTACCCTCGATTTACAG
1 AATTACCATTTTACCCTCGATTTACAG
*
32534468 AATTACCATTTTACCCTC-AGTTTACAA
1 AATTACCATTTTACCCTCGA-TTTACAG
**
32534495 AATTACTGTTTTACCCTCGATTTACAG
1 AATTACCATTTTACCCTCGATTTACAG
* *
32534522 AATTACCGTTTTACCCT-TAGTTTACAG
1 AATTACCATTTTACCCTCGA-TTTACAG
* *
32534549 AATTACTATTTTATCCTCGATTTACAG
1 AATTACCATTTTACCCTCGATTTACAG
**
32534576 AATTACTGTTTT-CACCTC-AGTTTACAG
1 AATTACCATTTTAC-CCTCGA-TTTACAG
* *
32534603 AATTACTATTTTACCCTCGATTTATAG
1 AATTACCATTTTACCCTCGATTTACAG
*
32534630 AATTACCGTTTTACCCTC-AGTTTACAG
1 AATTACCATTTTACCCTCGA-TTTACAG
* * *
32534657 AATTACCGTTTTACCTTCAATTTACAG
1 AATTACCATTTTACCCTCGATTTACAG
32534684 AATTACCA
1 AATTACCA
32534692 AAATACCCTT
Statistics
Matches: 195, Mismatches: 19, Indels: 20
0.83 0.08 0.09
Matches are distributed among these distances:
26 4 0.02
27 186 0.95
28 5 0.03
ACGTcount: A:0.29, C:0.23, G:0.08, T:0.40
Consensus pattern (27 bp):
AATTACCATTTTACCCTCGATTTACAG
Found at i:32534497 original size:54 final size:54
Alignment explanation
Indices: 32534441--32534690 Score: 376
Period size: 54 Copynumber: 4.6 Consensus size: 54
32534431 CGACTTGTAA
* * *
32534441 AATTACCATTTTACCCTCGATTTACAGAATTACCATTTTACCCTCAGTTTACAA
1 AATTACTATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCAGTTTACAG
* *
32534495 AATTACTGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTTAGTTTACAG
1 AATTACTATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCAGTTTACAG
* *
32534549 AATTACTATTTTATCCTCGATTTACAGAATTACTGTTTT-CACCTCAGTTTACAG
1 AATTACTATTTTACCCTCGATTTACAGAATTACCGTTTTAC-CCTCAGTTTACAG
*
32534603 AATTACTATTTTACCCTCGATTTATAGAATTACCGTTTTACCCTCAGTTTACAG
1 AATTACTATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCAGTTTACAG
** * *
32534657 AATTACCGTTTTACCTTCAATTTACAGAATTACC
1 AATTACTATTTTACCCTCGATTTACAGAATTACC
32534691 AAAATACCCT
Statistics
Matches: 177, Mismatches: 17, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
53 1 0.01
54 175 0.99
55 1 0.01
ACGTcount: A:0.29, C:0.23, G:0.08, T:0.40
Consensus pattern (54 bp):
AATTACTATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCAGTTTACAG
Found at i:32534698 original size:27 final size:27
Alignment explanation
Indices: 32534590--32534777 Score: 72
Period size: 27 Copynumber: 7.0 Consensus size: 27
32534580 ACTGTTTTCA
* * ***
32534590 CCTCAGTTTACAGAATTACTATTTTAC
1 CCTCAATTTACAGAATTACCAAAATAC
* * ****
32534617 CCTCGATTTATAGAATTACCGTTTTAC
1 CCTCAATTTACAGAATTACCAAAATAC
* ****
32534644 CCTCAGTTTACAGAATTACCGTTTTAC
1 CCTCAATTTACAGAATTACCAAAATAC
*
32534671 CTTCAATTTACAGAATTACCAAAATAC
1 CCTCAATTTACAGAATTACCAAAATAC
*** * * *
32534698 CCTTGGTTTATAAAATCACCAAAATAC
1 CCTCAATTTACAGAATTACCAAAATAC
* ** * *
32534725 CC-CTAGTTTGTAAAATTACTAAAATAC
1 CCTC-AATTTACAGAATTACCAAAATAC
*** *
32534752 CCTTGGTTTACAAAATTACCAAAATA
1 CCTCAATTTACAGAATTACCAAAATA
32534778 TTCATGGTTT
Statistics
Matches: 128, Mismatches: 31, Indels: 4
0.79 0.19 0.02
Matches are distributed among these distances:
27 128 1.00
ACGTcount: A:0.36, C:0.22, G:0.08, T:0.35
Consensus pattern (27 bp):
CCTCAATTTACAGAATTACCAAAATAC
Found at i:32534709 original size:81 final size:80
Alignment explanation
Indices: 32534441--32534691 Score: 344
Period size: 81 Copynumber: 3.1 Consensus size: 80
32534431 CGACTTGTAA
*
32534441 AATTACCATTTTACCCTCGATTTACAGAATTACCATTTTACCCTCAGTTTACAAAATTACTGTTT
1 AATTACCATTTTACCCTCGATTTACAGAATTACCATTTTACCCTCAGTTTACAGAATTACTGTTT
*
32534506 TACCCTCGATTTACAG
66 TA-CCTCAATTTACAG
* * * *
32534522 AATTACCGTTTTACCCT-TAGTTTACAGAATTACTATTTTATCCTC-GATTTACAGAATTACTGT
1 AATTACCATTTTACCCTCGA-TTTACAGAATTACCATTTTACCCTCAG-TTTACAGAATTACTGT
*
32534585 TTTCACCTCAGTTTACAG
64 TTT-ACCTCAATTTACAG
* * * *
32534603 AATTACTATTTTACCCTCGATTTATAGAATTACCGTTTTACCCTCAGTTTACAGAATTACCGTTT
1 AATTACCATTTTACCCTCGATTTACAGAATTACCATTTTACCCTCAGTTTACAGAATTACTGTTT
32534668 TACCTTCAATTTACAG
66 TACC-TCAATTTACAG
32534684 AATTACCA
1 AATTACCA
32534692 AAATACCCTT
Statistics
Matches: 147, Mismatches: 17, Indels: 12
0.84 0.10 0.07
Matches are distributed among these distances:
80 5 0.03
81 139 0.95
82 3 0.02
ACGTcount: A:0.29, C:0.23, G:0.08, T:0.40
Consensus pattern (80 bp):
AATTACCATTTTACCCTCGATTTACAGAATTACCATTTTACCCTCAGTTTACAGAATTACTGTTT
TACCTCAATTTACAG
Found at i:32534742 original size:54 final size:54
Alignment explanation
Indices: 32534684--32534807 Score: 176
Period size: 54 Copynumber: 2.3 Consensus size: 54
32534674 CAATTTACAG
* * * *
32534684 AATTACCAAAATACCCTTGGTTTATAAAATCACCAAAATACCCCTAGTTTGTAA
1 AATTACTAAAATACCCTTGGTTTACAAAATCACCAAAATACCCATAGTTTGAAA
* ** *
32534738 AATTACTAAAATACCCTTGGTTTACAAAATTACCAAAATATTCATGGTTTGAAA
1 AATTACTAAAATACCCTTGGTTTACAAAATCACCAAAATACCCATAGTTTGAAA
32534792 AATTACTAAAATACCC
1 AATTACTAAAATACCC
32534808 CTGTAGGGTA
Statistics
Matches: 62, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
54 62 1.00
ACGTcount: A:0.43, C:0.19, G:0.07, T:0.31
Consensus pattern (54 bp):
AATTACTAAAATACCCTTGGTTTACAAAATCACCAAAATACCCATAGTTTGAAA
Found at i:32534762 original size:81 final size:81
Alignment explanation
Indices: 32534677--32534838 Score: 211
Period size: 81 Copynumber: 2.0 Consensus size: 81
32534667 TTACCTTCAA
* * **
32534677 TTTACAGAATTACCAAAATACCCTTGGTTT-ATAAAATCACCAAAATACCCCTAGT-TTGTAAAA
1 TTTACAAAATTACCAAAATACCCATGGTTTGA-AAAATCACCAAAATACCCCT-GTAGGGTAAAA
32534740 TTACTAAAATACCCTTGG
64 TTACTAAAATACCCTTGG
** * *
32534758 TTTACAAAATTACCAAAATATTCATGGTTTGAAAAATTACTAAAATACCCCTGTAGGGTAAAATT
1 TTTACAAAATTACCAAAATACCCATGGTTTGAAAAATCACCAAAATACCCCTGTAGGGTAAAATT
*
32534823 ACTGAAATACCCTTGG
66 ACTAAAATACCCTTGG
32534839 GGTAAAATTA
Statistics
Matches: 70, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
80 2 0.03
81 67 0.96
82 1 0.01
ACGTcount: A:0.40, C:0.19, G:0.10, T:0.31
Consensus pattern (81 bp):
TTTACAAAATTACCAAAATACCCATGGTTTGAAAAATCACCAAAATACCCCTGTAGGGTAAAATT
ACTAAAATACCCTTGG
Found at i:32534785 original size:27 final size:27
Alignment explanation
Indices: 32534677--32534807 Score: 138
Period size: 27 Copynumber: 4.9 Consensus size: 27
32534667 TTACCTTCAA
*
32534677 TTTACAGAATTACCAAAATACCCTTGG
1 TTTACAAAATTACCAAAATACCCTTGG
* * * *
32534704 TTTATAAAATCACCAAAATACCCCTAG
1 TTTACAAAATTACCAAAATACCCTTGG
** *
32534731 TTTGTAAAATTACTAAAATACCCTTGG
1 TTTACAAAATTACCAAAATACCCTTGG
** *
32534758 TTTACAAAATTACCAAAATATTCATGG
1 TTTACAAAATTACCAAAATACCCTTGG
*
32534785 TTTGA-AAAATTACTAAAATACCC
1 TTT-ACAAAATTACCAAAATACCC
32534808 CTGTAGGGTA
Statistics
Matches: 84, Mismatches: 19, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
27 83 0.99
28 1 0.01
ACGTcount: A:0.42, C:0.19, G:0.08, T:0.31
Consensus pattern (27 bp):
TTTACAAAATTACCAAAATACCCTTGG
Found at i:32534847 original size:25 final size:27
Alignment explanation
Indices: 32534790--32534849 Score: 88
Period size: 27 Copynumber: 2.3 Consensus size: 27
32534780 CATGGTTTGA
32534790 AAAATTACTAAAATACCCCTGTAGGGT
1 AAAATTACTAAAATACCCCTGTAGGGT
* *
32534817 AAAATTACTGAAATA-CCCT-TGGGGT
1 AAAATTACTAAAATACCCCTGTAGGGT
32534842 AAAATTAC
1 AAAATTAC
32534850 CATTTTGCCC
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
25 13 0.42
26 4 0.13
27 14 0.45
ACGTcount: A:0.42, C:0.17, G:0.15, T:0.27
Consensus pattern (27 bp):
AAAATTACTAAAATACCCCTGTAGGGT
Found at i:32535502 original size:28 final size:28
Alignment explanation
Indices: 32535470--32535538 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
32535460 GCGTAGATCA
32535470 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
32535498 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
32535526 CGATA-TACCCCTA
1 CGAAATTACCCCTA
32535539 GGGTTTTAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 8 0.20
28 32 0.80
ACGTcount: A:0.43, C:0.28, G:0.10, T:0.19
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:32538681 original size:27 final size:27
Alignment explanation
Indices: 32538665--32538915 Score: 287
Period size: 27 Copynumber: 9.3 Consensus size: 27
32538655 CGACTTGTAA
32538665 AATTACCATTTTACCCTCGATTTACAG
1 AATTACCATTTTACCCTCGATTTACAG
32538692 AATTACCATTTTACCCTC-AGTTTACAG
1 AATTACCATTTTACCCTCGA-TTTACAG
**
32538719 AATTACTGTTTTACCCTCGATTTACAG
1 AATTACCATTTTACCCTCGATTTACAG
* *
32538746 AATTACCGTTTTACCCT-TAGTTTACAG
1 AATTACCATTTTACCCTCGA-TTTACAG
* *
32538773 AATTACTATTTTATCCTCGATTTACAG
1 AATTACCATTTTACCCTCGATTTACAG
**
32538800 AATTACTGTTTT-CACCTC-AGTTTACAG
1 AATTACCATTTTAC-CCTCGA-TTTACAG
* * *
32538827 AATTACTATTTTACCCTTGATTTATAG
1 AATTACCATTTTACCCTCGATTTACAG
*
32538854 AATTACCGTTTTACCCTC-AGTTTACAG
1 AATTACCATTTTACCCTCGA-TTTACAG
* * *
32538881 AATTACCGTTTTACCTTCAATTTACAG
1 AATTACCATTTTACCCTCGATTTACAG
32538908 AATTACCA
1 AATTACCA
32538916 AAATACCCTT
Statistics
Matches: 195, Mismatches: 19, Indels: 20
0.83 0.08 0.09
Matches are distributed among these distances:
26 4 0.02
27 186 0.95
28 5 0.03
ACGTcount: A:0.29, C:0.22, G:0.09, T:0.40
Consensus pattern (27 bp):
AATTACCATTTTACCCTCGATTTACAG
Found at i:32538723 original size:54 final size:54
Alignment explanation
Indices: 32538665--32538914 Score: 376
Period size: 54 Copynumber: 4.6 Consensus size: 54
32538655 CGACTTGTAA
* *
32538665 AATTACCATTTTACCCTCGATTTACAGAATTACCATTTTACCCTCAGTTTACAG
1 AATTACTATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCAGTTTACAG
* *
32538719 AATTACTGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTTAGTTTACAG
1 AATTACTATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCAGTTTACAG
* *
32538773 AATTACTATTTTATCCTCGATTTACAGAATTACTGTTTT-CACCTCAGTTTACAG
1 AATTACTATTTTACCCTCGATTTACAGAATTACCGTTTTAC-CCTCAGTTTACAG
* *
32538827 AATTACTATTTTACCCTTGATTTATAGAATTACCGTTTTACCCTCAGTTTACAG
1 AATTACTATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCAGTTTACAG
** * *
32538881 AATTACCGTTTTACCTTCAATTTACAGAATTACC
1 AATTACTATTTTACCCTCGATTTACAGAATTACC
32538915 AAAATACCCT
Statistics
Matches: 176, Mismatches: 18, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
53 1 0.01
54 174 0.99
55 1 0.01
ACGTcount: A:0.28, C:0.22, G:0.09, T:0.40
Consensus pattern (54 bp):
AATTACTATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCAGTTTACAG
Found at i:32538922 original size:27 final size:27
Alignment explanation
Indices: 32538676--32539004 Score: 77
Period size: 27 Copynumber: 12.2 Consensus size: 27
32538666 ATTACCATTT
* ***
32538676 TACCCTCGATTTACAGAATTACCATTT
1 TACCCTCAATTTACAGAATTACCAAAA
* *****
32538703 TACCCTCAGTTTACAGAATTACTGTTT
1 TACCCTCAATTTACAGAATTACCAAAA
* ****
32538730 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCAATTTACAGAATTACCAAAA
* * * ***
32538757 TACCCTTAGTTTACAGAATTACTATTT
1 TACCCTCAATTTACAGAATTACCAAAA
* * ****
32538784 TATCCTCGATTTACAGAATTA-CTGTT
1 TACCCTCAATTTACAGAATTACCAAAA
* * * ***
32538810 TTCACCTCAGTTTACAGAATTACTATTT
1 TAC-CCTCAATTTACAGAATTACCAAAA
** * ****
32538838 TACCCTTGATTTATAGAATTACCGTTT
1 TACCCTCAATTTACAGAATTACCAAAA
* ****
32538865 TACCCTCAGTTTACAGAATTACCGTTT
1 TACCCTCAATTTACAGAATTACCAAAA
*
32538892 TACCTTCAATTTACAGAATTACCAAAA
1 TACCCTCAATTTACAGAATTACCAAAA
*** * * *
32538919 TACCCTTGGTTTATAAAATCACCAAAA
1 TACCCTCAATTTACAGAATTACCAAAA
* ** * *
32538946 TACCC-CTAGTTTGTAAAATTACTAAAA
1 TACCCTC-AATTTACAGAATTACCAAAA
*** *
32538973 TACCCTTGGTTTACAAAATTACCAAAA
1 TACCCTCAATTTACAGAATTACCAAAA
32539000 TACCC
1 TACCC
32539005 ATGGTTTGAA
Statistics
Matches: 238, Mismatches: 60, Indels: 8
0.78 0.20 0.03
Matches are distributed among these distances:
26 3 0.01
27 231 0.97
28 4 0.02
ACGTcount: A:0.32, C:0.22, G:0.09, T:0.37
Consensus pattern (27 bp):
TACCCTCAATTTACAGAATTACCAAAA
Found at i:32538933 original size:81 final size:80
Alignment explanation
Indices: 32538665--32538915 Score: 353
Period size: 81 Copynumber: 3.1 Consensus size: 80
32538655 CGACTTGTAA
*
32538665 AATTACCATTTTACCCTCGATTTACAGAATTACCATTTTACCCTCAGTTTACAGAATTACTGTTT
1 AATTACCATTTTACCCTTGATTTACAGAATTACCATTTTACCCTCAGTTTACAGAATTACTGTTT
*
32538730 TACCCTCGATTTACAG
66 TA-CCTCAATTTACAG
* * *
32538746 AATTACCGTTTTACCCTT-AGTTTACAGAATTACTATTTTATCCTC-GATTTACAGAATTACTGT
1 AATTACCATTTTACCCTTGA-TTTACAGAATTACCATTTTACCCTCAG-TTTACAGAATTACTGT
*
32538809 TTTCACCTCAGTTTACAG
64 TTT-ACCTCAATTTACAG
* * * *
32538827 AATTACTATTTTACCCTTGATTTATAGAATTACCGTTTTACCCTCAGTTTACAGAATTACCGTTT
1 AATTACCATTTTACCCTTGATTTACAGAATTACCATTTTACCCTCAGTTTACAGAATTACTGTTT
32538892 TACCTTCAATTTACAG
66 TACC-TCAATTTACAG
32538908 AATTACCA
1 AATTACCA
32538916 AAATACCCTT
Statistics
Matches: 149, Mismatches: 15, Indels: 12
0.85 0.09 0.07
Matches are distributed among these distances:
80 5 0.03
81 141 0.95
82 3 0.02
ACGTcount: A:0.29, C:0.22, G:0.09, T:0.40
Consensus pattern (80 bp):
AATTACCATTTTACCCTTGATTTACAGAATTACCATTTTACCCTCAGTTTACAGAATTACTGTTT
TACCTCAATTTACAG
Found at i:32538957 original size:81 final size:81
Alignment explanation
Indices: 32538703--32538950 Score: 189
Period size: 81 Copynumber: 3.1 Consensus size: 81
32538693 ATTACCATTT
* * ****
32538703 TACCCTCAGTTTACAGAATTACTGTTTT-ACCCTCGATTTACAGAATTACCGTTTTACCCTT-AG
1 TACCCTCAGTTTACAGAATTACCGTTTTCA-CCTCAATTTACAGAATTACCAAAATACCCTTGA-
* * * * ***
32538766 TTTACAGAATTACTATTT
64 TTTATAAAATCACCAAAA
* * * * ***
32538784 TATCCTC-GATTTACAGAATTACTGTTTTCACCTCAGTTTACAGAATTACTATTTTACCCTTGAT
1 TACCCTCAG-TTTACAGAATTACCGTTTTCACCTCAATTTACAGAATTACCAAAATACCCTTGAT
* * ****
32538848 TTATAGAATTACCGTTT
65 TTATAAAATCACCAAAA
*
32538865 TACCCTCAGTTTACAGAATTACCGTTTT-ACCTTCAATTTACAGAATTACCAAAATACCCTTGGT
1 TACCCTCAGTTTACAGAATTACCGTTTTCACC-TCAATTTACAGAATTACCAAAATACCCTTGAT
32538929 TTATAAAATCACCAAAA
65 TTATAAAATCACCAAAA
32538946 TACCC
1 TACCC
32538951 CTAGTTTGTA
Statistics
Matches: 140, Mismatches: 22, Indels: 10
0.81 0.13 0.06
Matches are distributed among these distances:
80 4 0.03
81 133 0.95
82 3 0.02
ACGTcount: A:0.30, C:0.23, G:0.09, T:0.38
Consensus pattern (81 bp):
TACCCTCAGTTTACAGAATTACCGTTTTCACCTCAATTTACAGAATTACCAAAATACCCTTGATT
TATAAAATCACCAAAA
Found at i:32538966 original size:54 final size:54
Alignment explanation
Indices: 32538908--32539031 Score: 194
Period size: 54 Copynumber: 2.3 Consensus size: 54
32538898 CAATTTACAG
* * * *
32538908 AATTACCAAAATACCCTTGGTTTATAAAATCACCAAAATACCCCTAGTTTGTAA
1 AATTACTAAAATACCCTTGGTTTACAAAATCACCAAAATACCCATAGTTTGAAA
* *
32538962 AATTACTAAAATACCCTTGGTTTACAAAATTACCAAAATACCCATGGTTTGAAA
1 AATTACTAAAATACCCTTGGTTTACAAAATCACCAAAATACCCATAGTTTGAAA
32539016 AATTACTAAAATACCC
1 AATTACTAAAATACCC
32539032 CTGTAGGGTA
Statistics
Matches: 64, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
54 64 1.00
ACGTcount: A:0.43, C:0.21, G:0.07, T:0.29
Consensus pattern (54 bp):
AATTACTAAAATACCCTTGGTTTACAAAATCACCAAAATACCCATAGTTTGAAA
Found at i:32539009 original size:27 final size:27
Alignment explanation
Indices: 32538901--32539031 Score: 156
Period size: 27 Copynumber: 4.9 Consensus size: 27
32538891 TTACCTTCAA
*
32538901 TTTACAGAATTACCAAAATACCCTTGG
1 TTTACAAAATTACCAAAATACCCTTGG
* * * *
32538928 TTTATAAAATCACCAAAATACCCCTAG
1 TTTACAAAATTACCAAAATACCCTTGG
** *
32538955 TTTGTAAAATTACTAAAATACCCTTGG
1 TTTACAAAATTACCAAAATACCCTTGG
*
32538982 TTTACAAAATTACCAAAATACCCATGG
1 TTTACAAAATTACCAAAATACCCTTGG
*
32539009 TTTGA-AAAATTACTAAAATACCC
1 TTT-ACAAAATTACCAAAATACCC
32539032 CTGTAGGGTA
Statistics
Matches: 88, Mismatches: 15, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
27 87 0.99
28 1 0.01
ACGTcount: A:0.42, C:0.21, G:0.08, T:0.30
Consensus pattern (27 bp):
TTTACAAAATTACCAAAATACCCTTGG
Found at i:32539044 original size:27 final size:27
Alignment explanation
Indices: 32539014--32539075 Score: 97
Period size: 27 Copynumber: 2.3 Consensus size: 27
32539004 CATGGTTTGA
32539014 AAAATTACTAAAATACCCCTGTAGGGT
1 AAAATTACTAAAATACCCCTGTAGGGT
* * *
32539041 AAAATTACTGAAATACCCTTGTGGGGT
1 AAAATTACTAAAATACCCCTGTAGGGT
32539068 AAAATTAC
1 AAAATTAC
32539076 CATTTTGCCC
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.40, C:0.16, G:0.16, T:0.27
Consensus pattern (27 bp):
AAAATTACTAAAATACCCCTGTAGGGT
Found at i:32539045 original size:54 final size:52
Alignment explanation
Indices: 32538908--32539058 Score: 151
Period size: 54 Copynumber: 2.8 Consensus size: 52
32538898 CAATTTACAG
* * * * *
32538908 AATTACCAAAATACCCTTGGTTTATAAAATCACCAAAATACCCCTAGTTTGTAA
1 AATTACTAAAATACCCTTGG--TGTAAAATTACCAAAATACCCATAGTTTGAAA
* *
32538962 AATTACTAAAATACCCTTGGTTTACAAAATTACCAAAATACCCATGGTTTGAAA
1 AATTACTAAAATACCCTTGGTGT--AAAATTACCAAAATACCCATAGTTTGAAA
**
32539016 AATTACTAAAATACCCCTGTAGG-GTAAAATTACTGAAATACCC
1 AATTACTAAAATA-CCCT-T-GGTGTAAAATTACCAAAATACCC
32539059 TTGTGGGGTA
Statistics
Matches: 83, Mismatches: 9, Indels: 10
0.81 0.09 0.10
Matches are distributed among these distances:
52 2 0.02
54 73 0.88
55 4 0.05
56 2 0.02
57 2 0.02
ACGTcount: A:0.42, C:0.21, G:0.09, T:0.28
Consensus pattern (52 bp):
AATTACTAAAATACCCTTGGTGTAAAATTACCAAAATACCCATAGTTTGAAA
Found at i:32539061 original size:81 final size:81
Alignment explanation
Indices: 32538901--32539061 Score: 227
Period size: 81 Copynumber: 2.0 Consensus size: 81
32538891 TTACCTTCAA
* * **
32538901 TTTACAGAATTACCAAAATACCCTTGGTTTATAAAATCACCAAAATACCCCTAGTTTGTAAAATT
1 TTTACAAAATTACCAAAATACCCATGGTTTATAAAATCACCAAAATACCCCTAGTGGGTAAAATT
32538966 ACTAAAATACCCTTGG
66 ACTAAAATACCCTTGG
* *
32538982 TTTACAAAATTACCAAAATACCCATGGTTTGA-AAAATTACTAAAATACCCCT-GTAGGGTAAAA
1 TTTACAAAATTACCAAAATACCCATGGTTT-ATAAAATCACCAAAATACCCCTAGT-GGGTAAAA
*
32539045 TTACTGAAATACCCTTG
64 TTACTAAAATACCCTTG
32539062 TGGGGTAAAA
Statistics
Matches: 71, Mismatches: 7, Indels: 4
0.87 0.09 0.05
Matches are distributed among these distances:
80 2 0.03
81 68 0.96
82 1 0.01
ACGTcount: A:0.40, C:0.20, G:0.10, T:0.30
Consensus pattern (81 bp):
TTTACAAAATTACCAAAATACCCATGGTTTATAAAATCACCAAAATACCCCTAGTGGGTAAAATT
ACTAAAATACCCTTGG
Found at i:32539736 original size:28 final size:28
Alignment explanation
Indices: 32539704--32539772 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
32539694 GCGTAGATCA
32539704 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
32539732 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
32539760 CGATA-TACCCCTA
1 CGAAATTACCCCTA
32539773 GGGTTTTAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 8 0.20
28 32 0.80
ACGTcount: A:0.43, C:0.28, G:0.10, T:0.19
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:32542404 original size:47 final size:47
Alignment explanation
Indices: 32542347--32542455 Score: 164
Period size: 47 Copynumber: 2.3 Consensus size: 47
32542337 GTATGAGATA
*
32542347 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCGAATGGCCAACGTGATGAATGTGAAAGTG
* * * *
32542394 TATATATGTGATAGGGCCGAGTGGCCAACGTGATGGATGTGGAAGTG
1 TATATATGTGATAAGGCCGAATGGCCAACGTGATGAATGTGAAAGTG
*
32542441 TATAAATGTGATAAG
1 TATATATGTGATAAG
32542456 TCCCGAAGGG
Statistics
Matches: 55, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
47 55 1.00
ACGTcount: A:0.32, C:0.08, G:0.32, T:0.28
Consensus pattern (47 bp):
TATATATGTGATAAGGCCGAATGGCCAACGTGATGAATGTGAAAGTG
Found at i:32546072 original size:66 final size:68
Alignment explanation
Indices: 32545963--32546096 Score: 254
Period size: 66 Copynumber: 2.0 Consensus size: 68
32545953 TACTAATATG
32545963 TATGTATGTATGTATTTTATTTTATTTTTTTATTTTTTTTAAGAACAAGTCAAATAACATAGATC
1 TATGTATGTATGTATTTTATTTTATTTTTTTATTTTTTTTAAGAACAAGTCAAATAACATAGATC
32546028 TTT
66 TTT
32546031 TATGTATGTATGTATTTT-TTTTATTTTTTTA-TTTTTTTAAGAACAAGTCAAATAACATAGATC
1 TATGTATGTATGTATTTTATTTTATTTTTTTATTTTTTTTAAGAACAAGTCAAATAACATAGATC
32546094 TTT
66 TTT
32546097 GCTAACTATT
Statistics
Matches: 66, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
66 35 0.53
67 13 0.20
68 18 0.27
ACGTcount: A:0.31, C:0.06, G:0.09, T:0.54
Consensus pattern (68 bp):
TATGTATGTATGTATTTTATTTTATTTTTTTATTTTTTTTAAGAACAAGTCAAATAACATAGATC
TTT
Found at i:32556239 original size:25 final size:24
Alignment explanation
Indices: 32556206--32556270 Score: 69
Period size: 26 Copynumber: 2.7 Consensus size: 24
32556196 ATACATACGT
32556206 ATATA-TATTAAAATATGAACATA
1 ATATAGTATTAAAATATGAACATA
* *
32556229 ATAATAGTATTGAAAATATGTACCTA
1 AT-ATAGTATT-AAAATATGAACATA
**
32556255 ATATAGCGTTAAAATA
1 ATATAGTATTAAAATA
32556271 CATTAATAAT
Statistics
Matches: 35, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
23 2 0.06
24 9 0.26
25 10 0.29
26 14 0.40
ACGTcount: A:0.51, C:0.06, G:0.09, T:0.34
Consensus pattern (24 bp):
ATATAGTATTAAAATATGAACATA
Found at i:32556324 original size:25 final size:24
Alignment explanation
Indices: 32556290--32556380 Score: 89
Period size: 25 Copynumber: 3.8 Consensus size: 24
32556280 TATAGTTATT
*
32556290 TAAAAAATATAAACATAAGATAATA
1 TAAAATATATAAACATAA-ATAATA
* *
32556315 TAAAATATATATACATGAAATAGTA
1 TAAAATATATAAACAT-AAATAATA
32556340 TAAAATATATATAAC-T-AATAATA
1 TAAAATATATA-AACATAAATAATA
*
32556363 TTAAAA-ATATATACATAA
1 -TAAAATATATAAACATAA
32556381 TATATATTAG
Statistics
Matches: 55, Mismatches: 6, Indels: 11
0.76 0.08 0.15
Matches are distributed among these distances:
22 2 0.04
23 12 0.22
24 6 0.11
25 31 0.56
26 4 0.07
ACGTcount: A:0.62, C:0.04, G:0.03, T:0.31
Consensus pattern (24 bp):
TAAAATATATAAACATAAATAATA
Found at i:32556381 original size:23 final size:23
Alignment explanation
Indices: 32556292--32556394 Score: 86
Period size: 25 Copynumber: 4.3 Consensus size: 23
32556282 TAGTTATTTA
*
32556292 AAAAATATAAACATAAGATAATA-T
1 AAAAATATATACAT-A-ATAATATT
*
32556316 AAAATATATATACATGA-AATAGTAT
1 AAAA-ATATATACATAATAATA-T-T
32556341 AAAATATATATA-ACTAATAATATT
1 AAAA-ATATATACA-TAATAATATT
32556365 AAAAATATATACATAATATATATT
1 AAAAATATATACATAATA-ATATT
*
32556389 AGAAAT
1 AAAAAT
32556395 GATAATAATA
Statistics
Matches: 67, Mismatches: 4, Indels: 16
0.77 0.05 0.18
Matches are distributed among these distances:
22 4 0.06
23 13 0.19
24 21 0.31
25 25 0.37
26 4 0.06
ACGTcount: A:0.60, C:0.04, G:0.04, T:0.32
Consensus pattern (23 bp):
AAAAATATATACATAATAATATT
Found at i:32556517 original size:3 final size:3
Alignment explanation
Indices: 32556487--32556527 Score: 50
Period size: 3 Copynumber: 14.0 Consensus size: 3
32556477 ATACTAGTAC
*
32556487 TAA TAA TAT TAA TAA -AA TAA -ATA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TA-A TAA TAA TAA TAA TAA TAA
32556528 ATATACATGC
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
2 3 0.09
3 29 0.88
4 1 0.03
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:32556602 original size:14 final size:14
Alignment explanation
Indices: 32556583--32556644 Score: 54
Period size: 14 Copynumber: 4.2 Consensus size: 14
32556573 GTAACTACAT
32556583 ATAATATAATAATA
1 ATAATATAATAATA
*
32556597 ATAATATAA-AAAA
1 ATAATATAATAATA
* *
32556610 ATAGTGATAACAATA
1 ATAAT-ATAATAATA
32556625 ATATATATACATGAATA
1 ATA-ATATA-AT-AATA
32556642 ATA
1 ATA
32556645 TTTAAAGCTA
Statistics
Matches: 38, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
13 7 0.18
14 13 0.34
15 9 0.24
16 2 0.05
17 7 0.18
ACGTcount: A:0.61, C:0.03, G:0.05, T:0.31
Consensus pattern (14 bp):
ATAATATAATAATA
Found at i:32556611 original size:39 final size:42
Alignment explanation
Indices: 32556564--32556645 Score: 102
Period size: 39 Copynumber: 2.0 Consensus size: 42
32556554 ACCATACATT
32556564 TAAAAAAAT-GTAACT-ACATATAATATA-ATA-AT-AATAATA
1 TAAAAAAATAGTAA-TAACA-ATAATATATATACATGAATAATA
*
32556603 TAAAAAAATAGTGATAACAATAATATATATACATGAATAATA
1 TAAAAAAATAGTAATAACAATAATATATATACATGAATAATA
32556645 T
1 T
32556646 TTAAAGCTAA
Statistics
Matches: 37, Mismatches: 1, Indels: 7
0.82 0.02 0.16
Matches are distributed among these distances:
39 18 0.49
40 9 0.24
41 2 0.05
42 8 0.22
ACGTcount: A:0.60, C:0.05, G:0.05, T:0.30
Consensus pattern (42 bp):
TAAAAAAATAGTAATAACAATAATATATATACATGAATAATA
Done.