Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr03 135709677
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 135709677
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 112 of 438
Found at i:32557680 original size:22 final size:22
Alignment explanation
Indices: 32557655--32557704 Score: 57
Period size: 22 Copynumber: 2.3 Consensus size: 22
32557645 TTTCTCATTT
*
32557655 GTTTAGTTTATTTGGGTATT-GG
1 GTTTAGTTGA-TTGGGTATTAGG
* *
32557677 GTTTTGTTGATTGGGTTTTAGG
1 GTTTAGTTGATTGGGTATTAGG
32557699 GTTTAG
1 GTTTAG
32557705 GCTAAAATTG
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
21 8 0.35
22 15 0.65
ACGTcount: A:0.12, C:0.00, G:0.34, T:0.54
Consensus pattern (22 bp):
GTTTAGTTGATTGGGTATTAGG
Found at i:32558089 original size:21 final size:21
Alignment explanation
Indices: 32558064--32558113 Score: 64
Period size: 21 Copynumber: 2.4 Consensus size: 21
32558054 ATAAGATCTA
** *
32558064 CAACTTCAATGTGCTCGACTG
1 CAACTTCAATCAGCTCCACTG
32558085 CAACTTCAATCAGCTCCACTG
1 CAACTTCAATCAGCTCCACTG
*
32558106 TAACTTCA
1 CAACTTCA
32558114 GGGCTCTGTT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.28, C:0.32, G:0.12, T:0.28
Consensus pattern (21 bp):
CAACTTCAATCAGCTCCACTG
Found at i:32558375 original size:76 final size:73
Alignment explanation
Indices: 32558285--32558670 Score: 247
Period size: 76 Copynumber: 5.0 Consensus size: 73
32558275 AAAAATAGAA
*
32558285 TTTGAAAAACAGAAACTGAAAATACCTCAACGTGTCCCAAGGTTCAACTCACCTCTCGCAATATG
1 TTTGAAAAACAGAAACTGAAAATACCTCAACGTGTCCCAAGGCTCAACTCACCTCTCGCAATATG
32558350 AGCTTGAATTT
66 AG-TTG-A-TT
* ** *
32558361 TTTGAAAAACAGAAATTGAAAATACCTCAACGTGTTTCGAGGCTCAACTCACCTCTCGCAATATG
1 TTTGAAAAACAGAAACTGAAAATACCTCAACGTGTCCCAAGGCTCAACTCACCTCTCGCAATATG
32558426 AGTTGATT
66 AGTTGATT
* * ***** * ** ** * * *
32558434 TTTGAAACATAAATTGAAAAATGAAAATTGAAAATACCT-TAGCGTGTCTTGAGGCTCAACTCAC
1 TTTGAAA-A-ACA--G-AAACTGAAAATACCTCA-ACGTGTCCCAAGGC-TCA---AC---TCAC
*
32558498 CTCTAGCAATATGAGTTGA-T
53 CTCTCGCAATATGAGTTGATT
** * * * * * *
32558518 TTTGACGAACAGAAATTAAAAATACCTCAGCATGTAAGCCGAGGCTCAACTCACCTCTCGCAATA
1 TTTGAAAAACAGAAACTGAAAATACCTCAACGTGT--CCCAAGGCTCAACTCACCTCTCGCAATA
32558583 TGAGTTGATTTT
64 TGAGTTGA--TT
** * * **
32558595 TTTGATGAACAGAAA-TTAAAATTACCTCATCGTGTCCTGAGGCTCAACTCACCTCTCGCAATAT
1 TTTGAAAAACAGAAACTGAAAA-TACCTCAACGTGTCCCAAGGCTCAACTCACCTCTCGCAATAT
32558659 GAGTTGATT
65 GAGTTGATT
32558668 TTT
1 TTT
32558671 TTTTTGAAAG
Statistics
Matches: 245, Mismatches: 45, Indels: 43
0.74 0.14 0.13
Matches are distributed among these distances:
73 14 0.06
74 24 0.10
75 39 0.16
76 67 0.27
77 28 0.11
78 18 0.07
79 16 0.07
80 3 0.01
81 4 0.02
82 3 0.01
83 1 0.00
84 6 0.02
85 22 0.09
ACGTcount: A:0.34, C:0.20, G:0.16, T:0.29
Consensus pattern (73 bp):
TTTGAAAAACAGAAACTGAAAATACCTCAACGTGTCCCAAGGCTCAACTCACCTCTCGCAATATG
AGTTGATT
Found at i:32558509 original size:161 final size:159
Alignment explanation
Indices: 32558232--32558669 Score: 440
Period size: 161 Copynumber: 2.8 Consensus size: 159
32558222 GGCATATGAC
* *
32558232 CCGAGGCTCAACTCACCTCTCGTAATATGAGCTGACTTTTAATAAAAATAGAATTTGAAAAACAG
1 CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTT--TAAAAATAGAATTTGAAAAACAG
* *
32558297 AAACTGAAAATACCTCAACGTGTCCCAAGGTTCAACTCACCTCTCGCAATATGAGCTTGAATTTT
63 AAACTGAAAATACCTCAACGTGTCCCAAGGCTCAACTCACCTCTAGCAATATGAG-TTG-A--TT
* * *
32558362 TTGAAAAACAGAAATTGAAAATACCTCAACGTGT-T
124 TTGAAAAACAGAAATTAAAAATACCTCAACATGTAG
* * *
32558397 TCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAACATA-AA-TTGAAAAA-TGAA
1 CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT-AAAAATAGAATTTGAAAAACAG-A
* * * *** *
32558459 AATTGAAAATACCTTAGCGTGTCTTGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAC
64 AACTGAAAATACCTCAACGTGTCCCAAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAA
* *
32558524 GAACAGAAATTAAAAATACCTCAGCATGTAAG
129 AAACAGAAATTAAAAATACCTCAACATGT-AG
*
32558556 CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT-----TTG-A--TG---AACAGAAA
1 CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTAAAAATAGAATTTGAAAAACAGAAA
* * ** *
32558610 -TTAAAATTACCTCATCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
66 CTGAAAA-TACCTCAACGTGTCCCAAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTT
32558670 TTTTTTGAAA
Statistics
Matches: 239, Mismatches: 27, Indels: 30
0.81 0.09 0.10
Matches are distributed among these distances:
148 5 0.02
149 54 0.23
150 1 0.00
152 2 0.01
153 2 0.01
157 31 0.13
159 40 0.17
160 4 0.02
161 55 0.23
162 3 0.01
163 6 0.03
164 4 0.02
165 32 0.13
ACGTcount: A:0.34, C:0.21, G:0.16, T:0.29
Consensus pattern (159 bp):
CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTAAAAATAGAATTTGAAAAACAGAAA
CTGAAAATACCTCAACGTGTCCCAAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAA
ACAGAAATTAAAAATACCTCAACATGTAG
Found at i:32558539 original size:85 final size:85
Alignment explanation
Indices: 32558373--32558540 Score: 252
Period size: 85 Copynumber: 2.0 Consensus size: 85
32558363 TGAAAAACAG
*
32558373 AAATTGAAAATACCTCAACGTGTTTCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG
1 AAATTGAAAATACCTCAACGTGTTTCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTTG
*
32558438 AAACATAAATTGAAAAATGA
66 AAACAGAAATTGAAAAATGA
* *
32558458 AAATTGAAAATACCTTAGCGTGTCTT-GAGGCTCAACTCACCTCTAGCAATATGAGTTGA-TTTT
1 AAATTGAAAATACCTCAACGTGT-TTCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTT
32558521 GACGAACAGAAATT-AAAAAT
65 GA--AACAGAAATTGAAAAAT
32558541 ACCTCAGCAT
Statistics
Matches: 76, Mismatches: 4, Indels: 6
0.88 0.05 0.07
Matches are distributed among these distances:
84 6 0.08
85 59 0.78
86 11 0.14
ACGTcount: A:0.38, C:0.17, G:0.16, T:0.29
Consensus pattern (85 bp):
AAATTGAAAATACCTCAACGTGTTTCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTTG
AAACAGAAATTGAAAAATGA
Found at i:32558581 original size:74 final size:72
Alignment explanation
Indices: 32558458--32558669 Score: 282
Period size: 74 Copynumber: 2.9 Consensus size: 72
32558448 TGAAAAATGA
* * * * *
32558458 AAATTGAAAATACCTTAGCGTGTCTTGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGA
1 AAATTAAAAATACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGA
32558523 CGAACAG
66 CGAACAG
32558530 AAATTAAAAATACCTCAGCATGTAAGCC-GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
1 AAATTAAAAATACCTCAGCATGT---CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA---
*
32558594 TTTTGATGAACAG
60 TTTTGACGAACAG
* * *
32558607 AAATTAAAATTACCTCATCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
1 AAATTAAAAATACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
32558670 TTTTTTGAAA
Statistics
Matches: 124, Mismatches: 9, Indels: 14
0.84 0.06 0.10
Matches are distributed among these distances:
72 24 0.19
74 34 0.27
75 34 0.27
77 32 0.26
ACGTcount: A:0.32, C:0.21, G:0.17, T:0.30
Consensus pattern (72 bp):
AAATTAAAAATACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGA
CGAACAG
Found at i:32558660 original size:75 final size:74
Alignment explanation
Indices: 32558458--32558672 Score: 294
Period size: 75 Copynumber: 2.9 Consensus size: 74
32558448 TGAAAAATGA
* * *
32558458 AAATTGAAAATACCTTAGCGTGTCTTGAGGCTCAACTCACCTCTAGCAATATGAGTTGA---TTT
1 AAATT-AAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
32558520 TGACGAACAG
65 TGACGAACAG
*
32558530 AAATTAAAAATACCTCAGCATGTAAGCC-GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
1 AAATT-AAAATACCTCAGCGTGT---CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
*
32558594 TTTTGATGAACAG
62 TTTTGACGAACAG
*
32558607 AAATTAAAATTACCTCATCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
1 AAATTAAAA-TACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
32558672 T
65 T
32558673 TTTGAAAGAC
Statistics
Matches: 127, Mismatches: 8, Indels: 13
0.86 0.05 0.09
Matches are distributed among these distances:
72 20 0.16
74 34 0.27
75 41 0.32
76 4 0.03
77 28 0.22
ACGTcount: A:0.31, C:0.21, G:0.17, T:0.31
Consensus pattern (74 bp):
AAATTAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT
GACGAACAG
Found at i:32558693 original size:14 final size:14
Alignment explanation
Indices: 32558674--32558708 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
32558664 GATTTTTTTT
*
32558674 TTGAAAGACAGAAA
1 TTGAAAAACAGAAA
32558688 TTGAAAAACAGAAA
1 TTGAAAAACAGAAA
32558702 TTGAAAA
1 TTGAAAA
32558709 TACCTCAGCG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.60, C:0.06, G:0.17, T:0.17
Consensus pattern (14 bp):
TTGAAAAACAGAAA
Found at i:32558753 original size:241 final size:235
Alignment explanation
Indices: 32558328--32558761 Score: 662
Period size: 241 Copynumber: 1.8 Consensus size: 235
32558318 GTCCCAAGGT
32558328 TCAACTCACCTCTCGCAATATGAGCTTGAATTTTTTGAAAAACAGAAATTGAAAATACCTCAACG
1 TCAACTCACCTCTCGCAATATGAGCTTGAATTTTTTGAAAAACAGAAATTGAAAATACCTCAACG
* * *
32558393 TGTTTCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAACATAAATTGAAAAATGA
66 TGTCTCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAACAGAAATTGAAAAAAGA
*
32558458 AAATTGAAAATACCTTAGCGTGTCTTGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGA
131 AAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGA
32558523 CGAACAGAAATTAAAAATACCTCAGCATGTAAGCCGAGGC
196 CGAACAGAAATTAAAAATACCTCAGCATGTAAGCCGAGGC
* ** *
32558563 TCAACTCACCTCTCGCAATATGAG-TTGATTTTTTTGATGAACAGAAATT-AAAATTACCTCATC
1 TCAACTCACCTCTCGCAATATGAGCTTGAATTTTTTGAAAAACAGAAATTGAAAA-TACCTCAAC
32558626 GTGTC-CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTTGAAAGACAGAAATT
65 GTGTCTC-GAGGCTCAACTCACCTCTCGCAATATGAGTTGA-----TTTTTG-AA-ACAGAAATT
32558690 GAAAAACAG-AAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCA-CAATATGA
122 GAAAAA-AGAAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCACCTCT-AGCAATATGA
32558753 GTTGATTTT
185 GTTGATTTT
32558762 TGAAATAGAA
Statistics
Matches: 180, Mismatches: 8, Indels: 16
0.88 0.04 0.08
Matches are distributed among these distances:
233 5 0.03
234 67 0.37
235 24 0.13
239 6 0.03
240 2 0.01
241 74 0.41
242 2 0.01
ACGTcount: A:0.34, C:0.20, G:0.16, T:0.30
Consensus pattern (235 bp):
TCAACTCACCTCTCGCAATATGAGCTTGAATTTTTTGAAAAACAGAAATTGAAAATACCTCAACG
TGTCTCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAACAGAAATTGAAAAAAGA
AAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGA
CGAACAGAAATTAAAAATACCTCAGCATGTAAGCCGAGGC
Found at i:32560991 original size:28 final size:29
Alignment explanation
Indices: 32560960--32561090 Score: 131
Period size: 29 Copynumber: 4.6 Consensus size: 29
32560950 GTGACGAGAT
32560960 TGGCACTAAGTGTGCGTGCTGGAAA-ATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
32560988 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* * ****
32561017 TGGCACTAAGTGTGCGAGCTCGAAGGGCA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* * * **
32561046 TGGCACTATGTGTGCGGGCT-TAAATCGCA
1 TGGCACTAAGTGTGCGTGCTGGAAAT-ATA
32561075 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
32561091 AAATCGAGTA
Statistics
Matches: 87, Mismatches: 14, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
28 26 0.30
29 61 0.70
ACGTcount: A:0.25, C:0.18, G:0.33, T:0.24
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:32561027 original size:29 final size:28
Alignment explanation
Indices: 32560960--32561031 Score: 126
Period size: 28 Copynumber: 2.5 Consensus size: 28
32560950 GTGACGAGAT
*
32560960 TGGCACTAAGTGTGCGTGCTGGAAAATA
1 TGGCACTAAGTGTGCATGCTGGAAAATA
32560988 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAA-ATA
32561017 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
32561032 GAGCTCGAAG
Statistics
Matches: 42, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
28 24 0.57
29 18 0.43
ACGTcount: A:0.28, C:0.15, G:0.31, T:0.26
Consensus pattern (28 bp):
TGGCACTAAGTGTGCATGCTGGAAAATA
Found at i:32567878 original size:28 final size:29
Alignment explanation
Indices: 32567847--32567977 Score: 131
Period size: 29 Copynumber: 4.6 Consensus size: 29
32567837 GTGACGAGAT
32567847 TGGCACTAAGTGTGCGTGCTGGAAA-ATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
32567875 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* * ****
32567904 TGGCACTAAGTGTGCGAGCTCGAAGGGCA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* * * **
32567933 TGGCACTATGTGTGCGGGCT-TAAATCGCA
1 TGGCACTAAGTGTGCGTGCTGGAAAT-ATA
32567962 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
32567978 AAATCGAGTA
Statistics
Matches: 87, Mismatches: 14, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
28 26 0.30
29 61 0.70
ACGTcount: A:0.25, C:0.18, G:0.33, T:0.24
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:32567914 original size:29 final size:28
Alignment explanation
Indices: 32567847--32567918 Score: 126
Period size: 28 Copynumber: 2.5 Consensus size: 28
32567837 GTGACGAGAT
*
32567847 TGGCACTAAGTGTGCGTGCTGGAAAATA
1 TGGCACTAAGTGTGCATGCTGGAAAATA
32567875 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAA-ATA
32567904 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
32567919 GAGCTCGAAG
Statistics
Matches: 42, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
28 24 0.57
29 18 0.43
ACGTcount: A:0.28, C:0.15, G:0.31, T:0.26
Consensus pattern (28 bp):
TGGCACTAAGTGTGCATGCTGGAAAATA
Found at i:32571266 original size:70 final size:71
Alignment explanation
Indices: 32571124--32571286 Score: 303
Period size: 70 Copynumber: 2.3 Consensus size: 71
32571114 CGATTTGTCT
32571124 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
32571189 CTTTCA
66 CTTTCA
32571195 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTT-GAATCACGCATGCGA-CTAGGCTACATTTA
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTA-GCTACATTTA
32571258 TCTTTCA
65 TCTTTCA
32571265 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
32571287 GATACATCTC
Statistics
Matches: 91, Mismatches: 0, Indels: 3
0.97 0.00 0.03
Matches are distributed among these distances:
69 3 0.03
70 54 0.59
71 34 0.37
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.36
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:32573180 original size:29 final size:29
Alignment explanation
Indices: 32573090--32573249 Score: 180
Period size: 29 Copynumber: 5.5 Consensus size: 29
32573080 ACTCGATTTC
* * **
32573090 GCACACTTAGTGCCATGTGATTT-AAGCCC
1 GCACACTTAGTGCCATAT-ATTTCCAGCAT
* *** *
32573119 GCACACATAGTGCCATACCCTTCGAGC-T
1 GCACACTTAGTGCCATATATTTCCAGCAT
** *
32573147 CGCACACCCAGTGCCGTATATTTCCAGCAT
1 -GCACACTTAGTGCCATATATTTCCAGCAT
32573177 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
32573206 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
32573235 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
32573250 ATCTCGTCAC
Statistics
Matches: 111, Mismatches: 17, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
28 2 0.02
29 108 0.97
30 1 0.01
ACGTcount: A:0.26, C:0.31, G:0.17, T:0.26
Consensus pattern (29 bp):
GCACACTTAGTGCCATATATTTCCAGCAT
Found at i:32581289 original size:29 final size:29
Alignment explanation
Indices: 32581199--32581358 Score: 180
Period size: 29 Copynumber: 5.5 Consensus size: 29
32581189 ACTCGATTTC
* * **
32581199 GCACACTTAGTGCCATGTGATTT-AAGCCC
1 GCACACTTAGTGCCATAT-ATTTCCAGCAT
* *** *
32581228 GCACACATAGTGCCATACCCTTCGAGC-T
1 GCACACTTAGTGCCATATATTTCCAGCAT
** *
32581256 CGCACACCCAGTGCCGTATATTTCCAGCAT
1 -GCACACTTAGTGCCATATATTTCCAGCAT
32581286 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
32581315 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
32581344 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
32581359 ATCTCGTCAC
Statistics
Matches: 111, Mismatches: 17, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
28 2 0.02
29 108 0.97
30 1 0.01
ACGTcount: A:0.26, C:0.31, G:0.17, T:0.26
Consensus pattern (29 bp):
GCACACTTAGTGCCATATATTTCCAGCAT
Found at i:32582804 original size:70 final size:71
Alignment explanation
Indices: 32582698--32582829 Score: 162
Period size: 70 Copynumber: 1.9 Consensus size: 71
32582688 TCTCCATTTC
* * * * *
32582698 TTTATTCTTTCTAACATGATCCATTAACTAGACATGTTTGAA-ACATG-TTCCTTTTGCCCATGC
1 TTTATTATTTCTAACATCATCCATTAACAAAACATG-TTCAAGACATGTTTCCTTTTGCCCATGC
32582761 TCTTTAT
65 TCTTTAT
* *
32582768 TTTATTATTTCTAACATCCA-CCATTAGCAAAACATGTTCAAGACATGTTTTCTTTTGCCCAT
1 TTTATTATTTCTAACAT-CATCCATTAACAAAACATGTTCAAGACATGTTTCCTTTTGCCCAT
32582830 CTTCATTACC
Statistics
Matches: 52, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
69 4 0.08
70 34 0.65
71 14 0.27
ACGTcount: A:0.27, C:0.22, G:0.09, T:0.42
Consensus pattern (71 bp):
TTTATTATTTCTAACATCATCCATTAACAAAACATGTTCAAGACATGTTTCCTTTTGCCCATGCT
CTTTAT
Found at i:32584428 original size:20 final size:18
Alignment explanation
Indices: 32584398--32584440 Score: 52
Period size: 20 Copynumber: 2.3 Consensus size: 18
32584388 TTTGTAAAGT
*
32584398 TTGTAAAATAAGTTGTAAA
1 TTGTGAAATAA-TTGTAAA
32584417 TATGTGAAATAATTG-AAA
1 T-TGTGAAATAATTGTAAA
32584435 TTGTGA
1 TTGTGA
32584441 GTTGTTATAG
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
17 5 0.23
18 4 0.18
19 4 0.18
20 9 0.41
ACGTcount: A:0.44, C:0.00, G:0.19, T:0.37
Consensus pattern (18 bp):
TTGTGAAATAATTGTAAA
Found at i:32590097 original size:89 final size:89
Alignment explanation
Indices: 32589946--32590123 Score: 338
Period size: 89 Copynumber: 2.0 Consensus size: 89
32589936 GAATTGGGCC
32589946 CTTCAATGCTTTATCAGCCCAACTGGCCTTACTGAATTGGACCCTTTGAGCGCTGTTTCCTTATT
1 CTTCAATGCTTTATCAGCCCAACTGGCCTTACTGAATTGGACCCTTTGAGCGCTGTTTCCTTATT
*
32590011 ATTAATCTGGGCCTGAGCAGGATT
66 ATTAATCTGAGCCTGAGCAGGATT
32590035 CTTCAATGCTTTATCAGCCCAACTGGCCTTACTGAATTGGACCCTTTGAGCGCTGTTTCCTTATT
1 CTTCAATGCTTTATCAGCCCAACTGGCCTTACTGAATTGGACCCTTTGAGCGCTGTTTCCTTATT
*
32590100 ATTAATCTGAGCCTGAGTAGGATT
66 ATTAATCTGAGCCTGAGCAGGATT
32590124 GAAATCTTGG
Statistics
Matches: 87, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
89 87 1.00
ACGTcount: A:0.21, C:0.24, G:0.20, T:0.35
Consensus pattern (89 bp):
CTTCAATGCTTTATCAGCCCAACTGGCCTTACTGAATTGGACCCTTTGAGCGCTGTTTCCTTATT
ATTAATCTGAGCCTGAGCAGGATT
Found at i:32593374 original size:7 final size:7
Alignment explanation
Indices: 32593362--32593408 Score: 85
Period size: 7 Copynumber: 6.7 Consensus size: 7
32593352 TAGCCGTTTC
32593362 GTATTTA
1 GTATTTA
32593369 GTATTTA
1 GTATTTA
32593376 GTATTTA
1 GTATTTA
32593383 GTATTTA
1 GTATTTA
32593390 GTATTTA
1 GTATTTA
*
32593397 TTATTTA
1 GTATTTA
32593404 GTATT
1 GTATT
32593409 ACCTATATAA
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
7 38 1.00
ACGTcount: A:0.28, C:0.00, G:0.13, T:0.60
Consensus pattern (7 bp):
GTATTTA
Found at i:32594049 original size:18 final size:18
Alignment explanation
Indices: 32594026--32594067 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
32594016 TGTCAGGTGT
*
32594026 TATCCTAGCCCTTATATG
1 TATCCTAACCCTTATATG
*
32594044 TATCCTAACCCTTTTATG
1 TATCCTAACCCTTATATG
*
32594062 TTTCCT
1 TATCCT
32594068 TTTCCTAGTC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.19, C:0.29, G:0.07, T:0.45
Consensus pattern (18 bp):
TATCCTAACCCTTATATG
Found at i:32594339 original size:22 final size:21
Alignment explanation
Indices: 32594314--32594358 Score: 81
Period size: 21 Copynumber: 2.1 Consensus size: 21
32594304 CCCACAACTA
32594314 AATCCCCAGCCGGAGCAACCAC
1 AATCCCCA-CCGGAGCAACCAC
32594336 AATCCCCACCGGAGCAACCAC
1 AATCCCCACCGGAGCAACCAC
32594357 AA
1 AA
32594359 CCCTCGCCGG
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
21 15 0.65
22 8 0.35
ACGTcount: A:0.36, C:0.44, G:0.16, T:0.04
Consensus pattern (21 bp):
AATCCCCACCGGAGCAACCAC
Found at i:32594368 original size:21 final size:21
Alignment explanation
Indices: 32594314--32594369 Score: 78
Period size: 21 Copynumber: 2.6 Consensus size: 21
32594304 CCCACAACTA
32594314 AATCCCCAGCCGGAGCAACCAC
1 AATCCCC-GCCGGAGCAACCAC
*
32594336 AATCCCCACCGGAGCAACCAC
1 AATCCCCGCCGGAGCAACCAC
32594357 AA-CCCTCGCCGGA
1 AATCCC-CGCCGGA
32594370 AGCTGAACCA
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
20 3 0.10
21 21 0.68
22 7 0.23
ACGTcount: A:0.30, C:0.46, G:0.18, T:0.05
Consensus pattern (21 bp):
AATCCCCGCCGGAGCAACCAC
Found at i:32594631 original size:9 final size:9
Alignment explanation
Indices: 32594617--32594647 Score: 55
Period size: 9 Copynumber: 3.6 Consensus size: 9
32594607 TTGACTACGG
32594617 TAATATTTT
1 TAATATTTT
32594626 TAATATTTT
1 TAATATTTT
32594635 T-ATATTTT
1 TAATATTTT
32594643 TAATA
1 TAATA
32594648 AAATATAAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
8 8 0.38
9 13 0.62
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (9 bp):
TAATATTTT
Found at i:32597998 original size:125 final size:126
Alignment explanation
Indices: 32597680--32598266 Score: 888
Period size: 126 Copynumber: 4.7 Consensus size: 126
32597670 AGTCTAAGGC
* * * ** *
32597680 TTTT-TCAGATACTACTATAGCAAAAGAGCGTCCACTTGGGAGCTTTTTTTCATAATTTTGCTGA
1 TTTTATCAGATACTACTGTAGCAAAAGAGTGTCCACGTGGGAGCTTTTTCCCGTAATTTTGCTGA
*
32597744 AAGTGCATCCTTCTTAAAGCGTTTTTGACACTATTTGTTCAGAAACATCTTCTCAAAATTA
66 AAGTGCATCCTTCTTGAAGCGTTTTTGACACTATTTGTTCAGAAACATCTTCTCAAAATTA
* * * *
32597805 TTTTATCAGATACTACTGTAGCAAAAGAGTGGCCACATGGGAGCTTTTTCTCGTAATTTTGCTAA
1 TTTTATCAGATACTACTGTAGCAAAAGAGTGTCCACGTGGGAGCTTTTTCCCGTAATTTTGCTGA
32597870 AAGTGCATCCTTCTTGAAGCGTTTTTGACACTATTTGTTCAGAAACATCTTCTC-AAATTA
66 AAGTGCATCCTTCTTGAAGCGTTTTTGACACTATTTGTTCAGAAACATCTTCTCAAAATTA
* *
32597930 TTTTATCAGATACTACTGTAGCAAAAGAGTTTCCACGTGGGAGATTTTTCCCGTAATTTTGCTGA
1 TTTTATCAGATACTACTGTAGCAAAAGAGTGTCCACGTGGGAGCTTTTTCCCGTAATTTTGCTGA
* * * *
32597995 AAGTGCATCATTCTTTAAGCGTTTTTGACACAATTTGTTCAGAAACATCTTTTCAAAATTA
66 AAGTGCATCCTTCTTGAAGCGTTTTTGACACTATTTGTTCAGAAACATCTTCTCAAAATTA
*
32598056 TTTTATCAGATACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTTTTCCCGTAATTTTGCTGA
1 TTTTATCAGATACTACTGTAGCAAAAGAGTGTCCACGTGGGAGCTTTTTCCCGTAATTTTGCTGA
*
32598121 AAGTGCAT-C--CTT----CGTTTTTGACACTATTTGTTCAAAAACATCTTCTCAAAATTA
66 AAGTGCATCCTTCTTGAAGCGTTTTTGACACTATTTGTTCAGAAACATCTTCTCAAAATTA
** * **
32598175 TTTTATCAGATACTACTACAGCAAAAGAGTGTCCATGTGGGAGC-TTTTCCTATAATTTTGCTGA
1 TTTTATCAGATACTACTGTAGCAAAAGAGTGTCCACGTGGGAGCTTTTTCCCGTAATTTTGCTGA
32598239 AAGTGCATCCTTCTTGAAGCGTTTTTGA
66 AAGTGCATCCTTCTTGAAGCGTTTTTGA
32598267 ATCTTCTCAA
Statistics
Matches: 422, Mismatches: 31, Indels: 18
0.90 0.07 0.04
Matches are distributed among these distances:
118 26 0.06
119 80 0.19
121 3 0.01
123 3 0.01
125 128 0.30
126 182 0.43
ACGTcount: A:0.28, C:0.18, G:0.16, T:0.37
Consensus pattern (126 bp):
TTTTATCAGATACTACTGTAGCAAAAGAGTGTCCACGTGGGAGCTTTTTCCCGTAATTTTGCTGA
AAGTGCATCCTTCTTGAAGCGTTTTTGACACTATTTGTTCAGAAACATCTTCTCAAAATTA
Found at i:32598127 original size:251 final size:244
Alignment explanation
Indices: 32597680--32598266 Score: 881
Period size: 251 Copynumber: 2.4 Consensus size: 244
32597670 AGTCTAAGGC
* * **
32597680 TTTT-TCAGATACTACTATAGCAAAAGAGCGTCCACTTGGGAGCTTTTTTTCATAATTTTGCTGA
1 TTTTATCAGATACTACTATAGCAAAAGAGTGTCCACGTGGGAG-TTTTTCCCATAATTTTGCTGA
*
32597744 AAGTGCATCCTTCTTAAAGCGTTTTTGACACTATTTGTTCAGAAACATCTTCTCAAAATTATTTT
65 AAGTGCATCCTTCTTAAAGCGTTTTTGACACAATTTGTTCAGAAACATCTTCTCAAAATTATTTT
* *
32597809 ATCAGATACTACTGTAGCAAAAGAGTGGCCACATGGGAGCTTTTTCTCGTAATTTTGCTAAAAGT
130 ATCAGATACTACTGTAGCAAAAGAGCGGCCACATGGGAGCTTTTTCCCGTAATTTTGCTAAAAGT
*
32597874 GCATCCTTCTTGAAGCGTTTTTGACACTATTTGTTCAGAAACATCTTCTC-AAATTA
195 GCAT-C--CTT----CGTTTTTGACACTATTTGTTCAAAAACATCTTCTCAAAATTA
* * *
32597930 TTTTATCAGATACTACTGTAGCAAAAGAGTTTCCACGTGGGAGATTTTTCCCGTAATTTTGCTGA
1 TTTTATCAGATACTACTATAGCAAAAGAGTGTCCACGTGGGAG-TTTTTCCCATAATTTTGCTGA
* * *
32597995 AAGTGCATCATTCTTTAAGCGTTTTTGACACAATTTGTTCAGAAACATCTTTTCAAAATTATTTT
65 AAGTGCATCCTTCTTAAAGCGTTTTTGACACAATTTGTTCAGAAACATCTTCTCAAAATTATTTT
* * *
32598060 ATCAGATACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTTTTCCCGTAATTTTGCTGAAAGT
130 ATCAGATACTACTGTAGCAAAAGAGCGGCCACATGGGAGCTTTTTCCCGTAATTTTGCTAAAAGT
32598125 GCATCCTTCGTTTTTGACACTATTTGTTCAAAAACATCTTCTCAAAATTA
195 GCATCCTTCGTTTTTGACACTATTTGTTCAAAAACATCTTCTCAAAATTA
* * * *
32598175 TTTTATCAGATACTACTACAGCAAAAGAGTGTCCATGTGGGAGCTTTTCCTATAATTTTGCTGAA
1 TTTTATCAGATACTACTATAGCAAAAGAGTGTCCACGTGGGAGTTTTTCCCATAATTTTGCTGAA
*
32598240 AGTGCATCCTTCTTGAAGCGTTTTTGA
66 AGTGCATCCTTCTTAAAGCGTTTTTGA
32598267 ATCTTCTCAA
Statistics
Matches: 308, Mismatches: 27, Indels: 10
0.89 0.08 0.03
Matches are distributed among these distances:
244 78 0.25
245 45 0.15
248 3 0.01
250 5 0.02
251 177 0.57
ACGTcount: A:0.28, C:0.18, G:0.16, T:0.37
Consensus pattern (244 bp):
TTTTATCAGATACTACTATAGCAAAAGAGTGTCCACGTGGGAGTTTTTCCCATAATTTTGCTGAA
AGTGCATCCTTCTTAAAGCGTTTTTGACACAATTTGTTCAGAAACATCTTCTCAAAATTATTTTA
TCAGATACTACTGTAGCAAAAGAGCGGCCACATGGGAGCTTTTTCCCGTAATTTTGCTAAAAGTG
CATCCTTCGTTTTTGACACTATTTGTTCAAAAACATCTTCTCAAAATTA
Found at i:32598601 original size:122 final size:123
Alignment explanation
Indices: 32598369--32598610 Score: 289
Period size: 130 Copynumber: 2.0 Consensus size: 123
32598359 AAATCCTAAA
**
32598369 AAACCCTAAACCCTAATTTAATTATTTTTTTATTTTTGTAGTTAATTTAATTAATTAACCCTGAA
1 AAACCCTAAACCCTAATTTAATTATTTTTTTATTTTCATAGTTAATTTAATTAATTAACCCTG-A
* *
32598434 CTCTAATTAAATTAATTTTCCCTTAAAAAATATTAAAAACCCTAAACCACCAAAAAACCCT
65 -TCTAATTAAATT-ATTTTCCCTTAAAAAACACTAAAAACCCTAAACCACCAAAAAACCCT
* *
32598495 AAACCACTAAGCCTTAATTTAATTGATTTTTTCTTATTTTCATAGTTAATTTAATTAATTAACCC
1 AAACC-CTAAACCCTAATTTAATT-A-TTTTT-TTATTTTCATAGTTAATTTAATTAATTAACCC
* * *
32598560 TCG-T-TCATT-AA-T-TTTTCCCTTAAAAACCACT-AAAACCCTAAACCACTAAAA
62 T-GATCTAATTAAATTATTTTCCCTTAAAAAACACTAAAAACCCTAAACCACCAAAA
32598611 CCTTAACCCC
Statistics
Matches: 102, Mismatches: 9, Indels: 14
0.82 0.07 0.11
Matches are distributed among these distances:
122 19 0.19
123 16 0.16
125 1 0.01
126 7 0.07
127 20 0.20
128 2 0.02
129 5 0.05
130 31 0.30
131 1 0.01
ACGTcount: A:0.39, C:0.20, G:0.03, T:0.38
Consensus pattern (123 bp):
AAACCCTAAACCCTAATTTAATTATTTTTTTATTTTCATAGTTAATTTAATTAATTAACCCTGAT
CTAATTAAATTATTTTCCCTTAAAAAACACTAAAAACCCTAAACCACCAAAAAACCCT
Found at i:32598623 original size:15 final size:16
Alignment explanation
Indices: 32598583--32598625 Score: 61
Period size: 15 Copynumber: 2.8 Consensus size: 16
32598573 TTTCCCTTAA
32598583 AAACCACTAAAACCCT
1 AAACCACTAAAACCCT
32598599 AAACCACTAAAA-CCT
1 AAACCACTAAAACCCT
* *
32598614 TAACCCCTAAAA
1 AAACCACTAAAA
32598626 TAATCAAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
15 13 0.52
16 12 0.48
ACGTcount: A:0.51, C:0.35, G:0.00, T:0.14
Consensus pattern (16 bp):
AAACCACTAAAACCCT
Found at i:32598809 original size:97 final size:98
Alignment explanation
Indices: 32598631--32598904 Score: 532
Period size: 97 Copynumber: 2.8 Consensus size: 98
32598621 TAAAATAATC
*
32598631 AAAAACCCTAAAAACCCTAAACCACTAAGCCCTAATATAATTGATTTTTTCTTATTTTCATAGTT
1 AAAAACCCTAAAAACCCTAAACCACTAAGCCCTAATTTAATTGATTTTTTCTTATTTTCATAGTT
32598696 AATTTAATTAATTAGTTCATTAATTTTTCCTTA
66 AATTTAATTAATTAGTTCATTAATTTTTCCTTA
32598729 AAAAACCCTAAAAACCCTAAACCACTAAGCCCTAATTTAATTGATTTTTTCTTA-TTTCATAGTT
1 AAAAACCCTAAAAACCCTAAACCACTAAGCCCTAATTTAATTGATTTTTTCTTATTTTCATAGTT
32598793 AATTTAATTAATTAGTTCATTAATTTTTCCTTA
66 AATTTAATTAATTAGTTCATTAATTTTTCCTTA
32598826 AAAAACCCTAAAAACCCTAAACCACTAAGCCCTAATTTAATTGATTTTTTCTTATTTTCATAGTT
1 AAAAACCCTAAAAACCCTAAACCACTAAGCCCTAATTTAATTGATTTTTTCTTATTTTCATAGTT
32598891 AATTTAATTAATTA
66 AATTTAATTAATTA
32598905 ACCCTCAACT
Statistics
Matches: 174, Mismatches: 1, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
97 97 0.56
98 77 0.44
ACGTcount: A:0.37, C:0.18, G:0.04, T:0.41
Consensus pattern (98 bp):
AAAAACCCTAAAAACCCTAAACCACTAAGCCCTAATTTAATTGATTTTTTCTTATTTTCATAGTT
AATTTAATTAATTAGTTCATTAATTTTTCCTTA
Found at i:32599131 original size:17 final size:17
Alignment explanation
Indices: 32599109--32599170 Score: 97
Period size: 17 Copynumber: 3.6 Consensus size: 17
32599099 AAAAAACCCT
32599109 AAAAACCCTAAACCACC
1 AAAAACCCTAAACCACC
*
32599126 AAAAACCATAAACCACC
1 AAAAACCCTAAACCACC
*
32599143 AAAAACCCTAAACCACT
1 AAAAACCCTAAACCACC
*
32599160 AAAAATCCTAA
1 AAAAACCCTAA
32599171 CCTTAAAAAA
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 41 1.00
ACGTcount: A:0.56, C:0.34, G:0.00, T:0.10
Consensus pattern (17 bp):
AAAAACCCTAAACCACC
Found at i:32600859 original size:21 final size:21
Alignment explanation
Indices: 32600835--32600890 Score: 94
Period size: 21 Copynumber: 2.7 Consensus size: 21
32600825 AACAGCGGTG
*
32600835 GCGGTGAGATTAGTTACTGTA
1 GCGGTGAGATTAGATACTGTA
*
32600856 GCGGTGAGATTGGATACTGTA
1 GCGGTGAGATTAGATACTGTA
32600877 GCGGTGAGATTAGA
1 GCGGTGAGATTAGA
32600891 AACAGCGGTG
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.25, C:0.09, G:0.38, T:0.29
Consensus pattern (21 bp):
GCGGTGAGATTAGATACTGTA
Found at i:32607476 original size:17 final size:17
Alignment explanation
Indices: 32607447--32607481 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
32607437 GTTTAGGTTT
32607447 ATTTGTTTCAAAATTTA
1 ATTTGTTTCAAAATTTA
32607464 ATTT-TTTCTAAAATTTA
1 ATTTGTTTC-AAAATTTA
32607481 A
1 A
32607482 AAGGATATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 4 0.24
17 13 0.76
ACGTcount: A:0.37, C:0.06, G:0.03, T:0.54
Consensus pattern (17 bp):
ATTTGTTTCAAAATTTA
Found at i:32608883 original size:19 final size:18
Alignment explanation
Indices: 32608844--32608887 Score: 52
Period size: 19 Copynumber: 2.4 Consensus size: 18
32608834 ACAAGAAATA
32608844 AAAAATTCAAAAAAACAT
1 AAAAATTCAAAAAAACAT
* **
32608862 AAATAATTCATAAAAATTT
1 AAA-AATTCAAAAAAACAT
32608881 AAAAATT
1 AAAAATT
32608888 ATCATAAAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
18 7 0.32
19 15 0.68
ACGTcount: A:0.66, C:0.07, G:0.00, T:0.27
Consensus pattern (18 bp):
AAAAATTCAAAAAAACAT
Found at i:32613793 original size:20 final size:21
Alignment explanation
Indices: 32613768--32613806 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
32613758 CCCTTGAAAT
32613768 AGGGC-ACACGCCCGTGTGGA
1 AGGGCAACACGCCCGTGTGGA
32613788 AGGGCAACACGCCCGTGTG
1 AGGGCAACACGCCCGTGTG
32613807 ACCATTATGA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.21, C:0.31, G:0.38, T:0.10
Consensus pattern (21 bp):
AGGGCAACACGCCCGTGTGGA
Found at i:32615078 original size:48 final size:50
Alignment explanation
Indices: 32614959--32615094 Score: 174
Period size: 48 Copynumber: 2.8 Consensus size: 50
32614949 TGGGGTATAA
* *
32614959 TGCTAATGCCATGTCCCAGACATGGTCTTACACT-AGC-TCTCACATATTCG
1 TGCTGATGCCATGTCCCAGACATGGTCTTACACTGA-CATCT-ACATATACG
* *
32615009 TGCTGATGCCATGTCTCAGACATGGCCTTACACTGACATCT-C-TATACG
1 TGCTGATGCCATGTCCCAGACATGGTCTTACACTGACATCTACATATACG
32615057 TG-TCGATGCCATGTCCCAGACATGGTCTTACACTGACA
1 TGCT-GATGCCATGTCCCAGACATGGTCTTACACTGACA
32615095 CATCTCGTAG
Statistics
Matches: 77, Mismatches: 6, Indels: 8
0.85 0.07 0.09
Matches are distributed among these distances:
47 1 0.01
48 39 0.51
49 1 0.01
50 32 0.42
51 4 0.05
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.29
Consensus pattern (50 bp):
TGCTGATGCCATGTCCCAGACATGGTCTTACACTGACATCTACATATACG
Found at i:32615154 original size:46 final size:45
Alignment explanation
Indices: 32615066--32615184 Score: 136
Period size: 46 Copynumber: 2.6 Consensus size: 45
32615056 GTGTCGATGC
32615066 CATGTCCCAGACATGGTCTTACACT-GAC-ACATCTCGTAGCCGATA
1 CATGTCCCAGACAT-GTCTTACACTAG-CTACATCTCGTAGCCGATA
* *
32615111 CATGTCCCAGATATGTCTTACACTAGCTTACATCTCG-AGGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGC-TACATCTCGTA-GCCGATA
* **
32615157 CATGTCCCAAACATGAATTACACTAGCT
1 CATGTCCCAGACATGTCTTACACTAGCT
32615185 CTTAATGTCG
Statistics
Matches: 64, Mismatches: 6, Indels: 8
0.82 0.08 0.10
Matches are distributed among these distances:
44 11 0.17
45 16 0.25
46 37 0.58
ACGTcount: A:0.28, C:0.29, G:0.17, T:0.26
Consensus pattern (45 bp):
CATGTCCCAGACATGTCTTACACTAGCTACATCTCGTAGCCGATA
Found at i:32624346 original size:13 final size:13
Alignment explanation
Indices: 32624328--32624380 Score: 61
Period size: 13 Copynumber: 3.8 Consensus size: 13
32624318 GGGCGTGTGT
32624328 CACACATGGGCAA
1 CACACATGGGCAA
*
32624341 CACACATGGGCATGTGT
1 CACACATGGGCA----A
32624358 CACACATGGGCAA
1 CACACATGGGCAA
32624371 CACACATGGG
1 CACACATGGG
32624381 AATGTGAGCC
Statistics
Matches: 34, Mismatches: 2, Indels: 8
0.77 0.05 0.18
Matches are distributed among these distances:
13 22 0.65
17 12 0.35
ACGTcount: A:0.32, C:0.28, G:0.26, T:0.13
Consensus pattern (13 bp):
CACACATGGGCAA
Found at i:32624349 original size:30 final size:30
Alignment explanation
Indices: 32624313--32624386 Score: 130
Period size: 30 Copynumber: 2.5 Consensus size: 30
32624303 ACAGCTTGGC
*
32624313 CACATGGGCGTGTGTCACACATGGGCAACA
1 CACATGGGCATGTGTCACACATGGGCAACA
32624343 CACATGGGCATGTGTCACACATGGGCAACA
1 CACATGGGCATGTGTCACACATGGGCAACA
*
32624373 CACATGGGAATGTG
1 CACATGGGCATGTG
32624387 AGCCAAGTTA
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
30 42 1.00
ACGTcount: A:0.28, C:0.24, G:0.30, T:0.18
Consensus pattern (30 bp):
CACATGGGCATGTGTCACACATGGGCAACA
Found at i:32624369 original size:17 final size:17
Alignment explanation
Indices: 32624313--32624369 Score: 68
Period size: 17 Copynumber: 3.6 Consensus size: 17
32624303 ACAGCTTGGC
*
32624313 CACATGGGCGTGTGTCA
1 CACATGGGCATGTGTCA
*
32624330 CACATGGGCA----ACA
1 CACATGGGCATGTGTCA
32624343 CACATGGGCATGTGTCA
1 CACATGGGCATGTGTCA
32624360 CACATGGGCA
1 CACATGGGCA
32624370 ACACACATGG
Statistics
Matches: 33, Mismatches: 3, Indels: 8
0.75 0.07 0.18
Matches are distributed among these distances:
13 12 0.36
17 21 0.64
ACGTcount: A:0.26, C:0.26, G:0.30, T:0.18
Consensus pattern (17 bp):
CACATGGGCATGTGTCA
Found at i:32629652 original size:68 final size:68
Alignment explanation
Indices: 32629502--32629659 Score: 160
Period size: 68 Copynumber: 2.3 Consensus size: 68
32629492 CTAGCCAATT
* * *
32629502 TATCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACACATGCGACCTAGCTACA
1 TATCTCGTAGCTCTCTTGTCTACATGGTGTACATCAC-TCGAATCACACATGCGACCTAGCTACA
**
32629567 TTTA
65 CATA
* * *
32629571 TCTCTCCCGTAGCTCTCTTGTCTACATGG-GATACATC-C-CGTATCACACATGTGACCTAGCTA
1 TATCT--CGTAGCTCTCTTGTCTACATGGTG-TACATCACTCGAATCACACATGCGACCTAGCTA
32629633 CTACATA
63 C-ACATA
*
32629640 GTATCTCGTAGCTTTCTTGT
1 -TATCTCGTAGCTCTCTTGT
32629660 ACACATGATG
Statistics
Matches: 74, Mismatches: 10, Indels: 11
0.78 0.11 0.12
Matches are distributed among these distances:
68 35 0.47
69 7 0.09
70 6 0.08
71 26 0.35
ACGTcount: A:0.21, C:0.28, G:0.16, T:0.35
Consensus pattern (68 bp):
TATCTCGTAGCTCTCTTGTCTACATGGTGTACATCACTCGAATCACACATGCGACCTAGCTACAC
ATA
Found at i:32649770 original size:24 final size:26
Alignment explanation
Indices: 32649743--32649791 Score: 68
Period size: 24 Copynumber: 2.0 Consensus size: 26
32649733 CCCATTTCAT
32649743 TTCATATA-CAATTC-ATT-CAATTTA
1 TTCA-ATACCAATTCTATTGCAATTTA
32649767 TTCAATACCAATTCTATTGCAATTT
1 TTCAATACCAATTCTATTGCAATTT
32649792 GTTCTTTTAC
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
23 3 0.14
24 10 0.45
25 3 0.14
26 6 0.27
ACGTcount: A:0.35, C:0.18, G:0.02, T:0.45
Consensus pattern (26 bp):
TTCAATACCAATTCTATTGCAATTTA
Found at i:32649956 original size:21 final size:21
Alignment explanation
Indices: 32649930--32649979 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
32649920 TCAGAAGTAA
*
32649930 TAATACGACACACATGGTGCC
1 TAATACGACACACATAGTGCC
* *
32649951 TAATACGATACATATAGTGCC
1 TAATACGACACACATAGTGCC
32649972 TAAT-CGAC
1 TAATACGAC
32649980 TCGAGGCCGA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
20 3 0.12
21 22 0.88
ACGTcount: A:0.36, C:0.24, G:0.16, T:0.24
Consensus pattern (21 bp):
TAATACGACACACATAGTGCC
Found at i:32651031 original size:21 final size:21
Alignment explanation
Indices: 32651007--32651047 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
32650997 TGTTTATTAA
*
32651007 TAATATTATAATAATATAATT
1 TAATAATATAATAATATAATT
* *
32651028 TAATAATATACTTATATAAT
1 TAATAATATAATAATATAAT
32651048 AAGTAAACAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.46
Consensus pattern (21 bp):
TAATAATATAATAATATAATT
Found at i:32651157 original size:5 final size:5
Alignment explanation
Indices: 32651147--32651195 Score: 89
Period size: 5 Copynumber: 9.6 Consensus size: 5
32651137 ATTTTACATA
32651147 ATAAT ATAAT ATAAT ATAAT ATAAT ATATAT ATAAT ATAAT ATAAT ATA
1 ATAAT ATAAT ATAAT ATAAT ATAAT ATA-AT ATAAT ATAAT ATAAT ATA
32651196 TTTATATTAA
Statistics
Matches: 43, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
5 38 0.88
6 5 0.12
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (5 bp):
ATAAT
Found at i:32651181 original size:26 final size:25
Alignment explanation
Indices: 32651151--32651209 Score: 93
Period size: 26 Copynumber: 2.4 Consensus size: 25
32651141 TACATAATAA
32651151 TATAATATAATATAATATAATATATA
1 TATAATATAATATAATAT-ATATATA
*
32651177 TATAATATAATATAATATATTTATA
1 TATAATATAATATAATATATATATA
32651202 T-TAATATA
1 TATAATATA
32651210 TTTAAAACAT
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
24 7 0.22
25 7 0.22
26 18 0.56
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (25 bp):
TATAATATAATATAATATATATATA
Found at i:32651210 original size:21 final size:21
Alignment explanation
Indices: 32651147--32651209 Score: 96
Period size: 21 Copynumber: 3.1 Consensus size: 21
32651137 ATTTTACATA
32651147 ATAATATA-ATATAATATAAT
1 ATAATATATATATAATATAAT
32651167 ATAATATATATATAATATAAT
1 ATAATATATATATAATATAAT
*
32651188 ATAATATATTTAT-AT-TAAT
1 ATAATATATATATAATATAAT
32651207 ATA
1 ATA
32651210 TTTAAAACAT
Statistics
Matches: 41, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
19 7 0.17
20 10 0.24
21 24 0.59
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (21 bp):
ATAATATATATATAATATAAT
Found at i:32652512 original size:20 final size:20
Alignment explanation
Indices: 32652489--32652526 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
32652479 AATTACTGGC
*
32652489 AGCTTGTCTACAATACTAGT
1 AGCTTGTCCACAATACTAGT
32652509 AGCTTGTCCACAATACTA
1 AGCTTGTCCACAATACTA
32652527 CTAGTTTATT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.32, C:0.24, G:0.13, T:0.32
Consensus pattern (20 bp):
AGCTTGTCCACAATACTAGT
Found at i:32652594 original size:39 final size:40
Alignment explanation
Indices: 32652502--32652600 Score: 121
Period size: 39 Copynumber: 2.5 Consensus size: 40
32652492 TTGTCTACAA
* *
32652502 TACTAGTA-GCTTGTCCACAATACTACTAGTTTATTTGTAT
1 TACTAG-AGGCTTGTCCACAATACCACTAGTTTATCTGTAT
* * *
32652542 TACTAGTGACTTGTCCACAATACCGC-AGTTTATCTGTAT
1 TACTAGAGGCTTGTCCACAATACCACTAGTTTATCTGTAT
*
32652581 TATTAGAGGCTTGTCCACAA
1 TACTAGAGGCTTGTCCACAA
32652601 ATTGGTGTGC
Statistics
Matches: 50, Mismatches: 8, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
39 29 0.58
40 21 0.42
ACGTcount: A:0.27, C:0.20, G:0.15, T:0.37
Consensus pattern (40 bp):
TACTAGAGGCTTGTCCACAATACCACTAGTTTATCTGTAT
Found at i:32654756 original size:18 final size:19
Alignment explanation
Indices: 32654719--32654756 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 19
32654709 TACACACTTA
*
32654719 TCCTTTATCCTTCTAATTT
1 TCCTTTATCCTTCAAATTT
*
32654738 TCCTTT-TCTTTCAAATTT
1 TCCTTTATCCTTCAAATTT
32654756 T
1 T
32654757 TATCTTTCCA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 11 0.65
19 6 0.35
ACGTcount: A:0.16, C:0.24, G:0.00, T:0.61
Consensus pattern (19 bp):
TCCTTTATCCTTCAAATTT
Found at i:32656073 original size:5 final size:5
Alignment explanation
Indices: 32656065--32656214 Score: 59
Period size: 5 Copynumber: 30.2 Consensus size: 5
32656055 AAAAAACAAA
* *
32656065 ATAAT ATAATAT ATAAT AGAAT A-AAA ATAAT ATAAT GAATAAT ATATAT
1 ATAAT AT-A-AT ATAAT ATAAT ATAAT ATAAT ATAAT --ATAAT ATA-AT
* * * *
32656114 AGTAAA ATGAT ATAAT AT-AT AATAAA AT-AT ATAA- ATAAA AT-AT ATAAT
1 A-TAAT ATAAT ATAAT ATAAT -ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT
* * * *
32656162 AAAAT ATAA- ATAAT ATGAT A-AACA ATACAT A-AAT A-AAA ATAAT AT-AT
1 ATAAT ATAAT ATAAT ATAAT ATAA-T ATA-AT ATAAT ATAAT ATAAT ATAAT
32656209 ATAAT A
1 ATAAT A
32656215 ATTTTTTACA
Statistics
Matches: 109, Mismatches: 18, Indels: 36
0.67 0.11 0.22
Matches are distributed among these distances:
4 30 0.28
5 57 0.52
6 10 0.09
7 12 0.11
ACGTcount: A:0.63, C:0.01, G:0.03, T:0.32
Consensus pattern (5 bp):
ATAAT
Found at i:32656080 original size:12 final size:12
Alignment explanation
Indices: 32656065--32656216 Score: 89
Period size: 12 Copynumber: 13.4 Consensus size: 12
32656055 AAAAAACAAA
32656065 ATAATATAATAT
1 ATAATATAATAT
*
32656077 ATAATAGAATA-
1 ATAATATAATAT
32656088 A-AA-ATAATAT
1 ATAATATAATAT
*
32656098 AATGA-ATAATAT
1 -ATAATATAATAT
32656110 AT-ATAGTAA-A-
1 ATAATA-TAATAT
*
32656120 ATGATATAATAT
1 ATAATATAATAT
*
32656132 ATAATAAAATAT
1 ATAATATAATAT
*
32656144 ATAAATAAAATAT
1 AT-AATATAATAT
32656157 ATAATA-AA-AT
1 ATAATATAATAT
32656167 ATAA-ATAATAT
1 ATAATATAATAT
* *
32656178 GATAA-ACAATAC
1 -ATAATATAATAT
*
32656190 ATAA-ATAA-AA
1 ATAATATAATAT
32656200 ATAATAT-ATAT
1 ATAATATAATAT
32656211 AATAAT
1 -ATAAT
32656217 TTTTTACATA
Statistics
Matches: 115, Mismatches: 10, Indels: 30
0.74 0.06 0.19
Matches are distributed among these distances:
9 6 0.05
10 22 0.19
11 24 0.21
12 51 0.44
13 12 0.10
ACGTcount: A:0.63, C:0.01, G:0.03, T:0.32
Consensus pattern (12 bp):
ATAATATAATAT
Found at i:32656121 original size:29 final size:32
Alignment explanation
Indices: 32656068--32656170 Score: 89
Period size: 29 Copynumber: 3.4 Consensus size: 32
32656058 AAACAAAATA
32656068 ATATAATATATAATAGAATAAAAATAATATAAT
1 ATATAATATATAATAG-ATAAAAATAATATAAT
*
32656101 GA-ATAATATAT-ATAG-T-AAAATGATATAAT
1 -ATATAATATATAATAGATAAAAATAATATAAT
*
32656130 ATATAATA-A-AATATATAAATAA-AATAT-AT
1 ATATAATATATAATAGATAAA-AATAATATAAT
*
32656159 A-ATAAAATATAA
1 ATATAATATATAA
32656171 ATAATATGAT
Statistics
Matches: 58, Mismatches: 4, Indels: 18
0.73 0.05 0.22
Matches are distributed among these distances:
28 10 0.17
29 23 0.40
30 9 0.16
31 2 0.03
32 4 0.07
33 9 0.16
34 1 0.02
ACGTcount: A:0.63, C:0.00, G:0.04, T:0.33
Consensus pattern (32 bp):
ATATAATATATAATAGATAAAAATAATATAAT
Found at i:32656144 original size:32 final size:34
Alignment explanation
Indices: 32656091--32656162 Score: 96
Period size: 32 Copynumber: 2.2 Consensus size: 34
32656081 TAGAATAAAA
* *
32656091 ATAATATAATGAATAATATATAT-AGTAAAATGAT
1 ATAATATAATGAATAAAATATATAAATAAAAT-AT
32656125 ATAATAT-AT-AATAAAATATATAAATAAAATAT
1 ATAATATAATGAATAAAATATATAAATAAAATAT
32656157 ATAATA
1 ATAATA
32656163 AAATATAAAT
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
32 19 0.54
33 9 0.26
34 7 0.20
ACGTcount: A:0.61, C:0.00, G:0.04, T:0.35
Consensus pattern (34 bp):
ATAATATAATGAATAAAATATATAAATAAAATAT
Found at i:32656152 original size:13 final size:12
Alignment explanation
Indices: 32656065--32656174 Score: 90
Period size: 12 Copynumber: 9.6 Consensus size: 12
32656055 AAAAAACAAA
*
32656065 ATAATATAATAT
1 ATAATAAAATAT
*
32656077 ATAATAGAATA-
1 ATAATAAAATAT
* *
32656088 AAAATAATATA-
1 ATAATAAAATAT
*
32656099 ATGAATAATATAT
1 AT-AATAAAATAT
* *
32656112 ATAGTAAAAT-G
1 ATAATAAAATAT
32656123 AT-AT--AATAT
1 ATAATAAAATAT
32656132 ATAATAAAATAT
1 ATAATAAAATAT
32656144 ATAAATAAAATAT
1 AT-AATAAAATAT
32656157 ATAATAAAATAT
1 ATAATAAAATAT
32656169 A-AATAA
1 ATAATAA
32656175 TATGATAAAC
Statistics
Matches: 81, Mismatches: 10, Indels: 15
0.76 0.09 0.14
Matches are distributed among these distances:
8 3 0.04
9 2 0.02
10 3 0.04
11 16 0.20
12 43 0.53
13 14 0.17
ACGTcount: A:0.64, C:0.00, G:0.04, T:0.33
Consensus pattern (12 bp):
ATAATAAAATAT
Found at i:32656216 original size:80 final size:80
Alignment explanation
Indices: 32656067--32656216 Score: 187
Period size: 80 Copynumber: 1.9 Consensus size: 80
32656057 AAAACAAAAT
* * * * * * *
32656067 AATATAATATATAATAGAATAAAAATAATATAATGAATAATATATATAGTAAAATGATATAATAT
1 AATAAAATATATAATAAAATAAAAATAATATAATAAACAATACATATAATAAAATAATATAATAT
32656132 ATAATAAAATATATA
66 ATAATAAAATATATA
* *
32656147 AATAAAATATATAATAAAATATAAATAATATGATAAACAATACATA-AATAAAAATAATAT-ATA
1 AATAAAATATATAATAAAATAAAAATAATATAATAAACAATACATATAAT-AAAATAATATAATA
32656210 TAATAAT
65 T-ATAAT
32656217 TTTTTACATA
Statistics
Matches: 59, Mismatches: 9, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
79 6 0.10
80 53 0.90
ACGTcount: A:0.63, C:0.01, G:0.03, T:0.32
Consensus pattern (80 bp):
AATAAAATATATAATAAAATAAAAATAATATAATAAACAATACATATAATAAAATAATATAATAT
ATAATAAAATATATA
Found at i:32656275 original size:25 final size:25
Alignment explanation
Indices: 32656247--32656300 Score: 74
Period size: 25 Copynumber: 2.2 Consensus size: 25
32656237 GTTTATAGTA
* *
32656247 AAAATAAAT-AATATATAAAATATTT
1 AAAATAAATAAAT-TATAAAAAAATT
32656272 AAAATAAATAAATTATAAAAAAATT
1 AAAATAAATAAATTATAAAAAAATT
32656297 AAAA
1 AAAA
32656301 GGATTAAAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
25 23 0.88
26 3 0.12
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (25 bp):
AAAATAAATAAATTATAAAAAAATT
Found at i:32659012 original size:20 final size:21
Alignment explanation
Indices: 32658970--32659018 Score: 55
Period size: 20 Copynumber: 2.4 Consensus size: 21
32658960 CAATTAAGCC
* * *
32658970 ATTTTATTATTAAAATCATTA
1 ATTTAATTATTAAAATAACTA
32658991 ATTTAATTATT-AAATAACTA
1 ATTTAATTATTAAAATAACTA
*
32659011 ATTAAATT
1 ATTTAATT
32659019 TTATGTGACA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
20 14 0.58
21 10 0.42
ACGTcount: A:0.47, C:0.04, G:0.00, T:0.49
Consensus pattern (21 bp):
ATTTAATTATTAAAATAACTA
Found at i:32663181 original size:41 final size:41
Alignment explanation
Indices: 32663124--32663205 Score: 164
Period size: 41 Copynumber: 2.0 Consensus size: 41
32663114 TCTGAATCTT
32663124 CCTCCAAACGTCTATCCAACCAACTAATGCTTCCTGTGTGA
1 CCTCCAAACGTCTATCCAACCAACTAATGCTTCCTGTGTGA
32663165 CCTCCAAACGTCTATCCAACCAACTAATGCTTCCTGTGTGA
1 CCTCCAAACGTCTATCCAACCAACTAATGCTTCCTGTGTGA
32663206 GCTGATATCA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 41 1.00
ACGTcount: A:0.27, C:0.34, G:0.12, T:0.27
Consensus pattern (41 bp):
CCTCCAAACGTCTATCCAACCAACTAATGCTTCCTGTGTGA
Found at i:32666732 original size:25 final size:24
Alignment explanation
Indices: 32666641--32666767 Score: 98
Period size: 25 Copynumber: 5.1 Consensus size: 24
32666631 CACTAGGGAT
* *
32666641 TACCGATTCTCAGCTTGTATGAGCT
1 TACCGATT-TCAGCTCGTATGAGCA
* *
32666666 TACCGATTGCAGCTCGTGA-GAGCT
1 TACCGATTTCAGCTCGT-ATGAGCA
* * *
32666690 TATCAATTCTCAGTTCGTATGAGCA
1 TACCGATT-TCAGCTCGTATGAGCA
32666715 TACCGATTTACAGCTCGT-TAGAGCA
1 TACCGATTT-CAGCTCGTAT-GAGCA
*
32666740 TACAGA-TTCATAGCTCGTATGAGCA
1 TACCGATTTC--AGCTCGTATGAGCA
32666765 TAC
1 TAC
32666768 ATGCATAAGA
Statistics
Matches: 83, Mismatches: 11, Indels: 16
0.75 0.10 0.15
Matches are distributed among these distances:
23 1 0.01
24 23 0.28
25 58 0.70
26 1 0.01
ACGTcount: A:0.26, C:0.23, G:0.20, T:0.31
Consensus pattern (24 bp):
TACCGATTTCAGCTCGTATGAGCA
Found at i:32666758 original size:50 final size:49
Alignment explanation
Indices: 32666646--32666767 Score: 149
Period size: 50 Copynumber: 2.5 Consensus size: 49
32666636 GGGATTACCG
* * * *
32666646 ATTCTCAGCTTGTATGAGCTTACCGATTGCAGCTCGTGAGAGCTTATCA
1 ATTCTCAGCTCGTATGAGCATACCGATTACAGCTCGTGAGAGCATATCA
* *
32666695 ATTCTCAGTTCGTATGAGCATACCGATTTACAGCTCGTTAGAGCATA-CA
1 ATTCTCAGCTCGTATGAGCATACCGA-TTACAGCTCGTGAGAGCATATCA
32666744 GATTCAT-AGCTCGTATGAGCATAC
1 -ATTC-TCAGCTCGTATGAGCATAC
32666768 ATGCATAAGA
Statistics
Matches: 63, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
49 25 0.40
50 37 0.59
51 1 0.02
ACGTcount: A:0.26, C:0.22, G:0.20, T:0.31
Consensus pattern (49 bp):
ATTCTCAGCTCGTATGAGCATACCGATTACAGCTCGTGAGAGCATATCA
Found at i:32668784 original size:40 final size:40
Alignment explanation
Indices: 32668729--32668946 Score: 298
Period size: 40 Copynumber: 5.5 Consensus size: 40
32668719 CGGATGATAA
* * *
32668729 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
32668769 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
32668809 CTGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
32668849 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
32668889 CCGGGCTATGTCCCGAAGGCATTCGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
32668929 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
32668947 TACCTGGCTT
Statistics
Matches: 161, Mismatches: 15, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
39 16 0.10
40 145 0.90
ACGTcount: A:0.22, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:32675303 original size:40 final size:40
Alignment explanation
Indices: 32675231--32675415 Score: 234
Period size: 40 Copynumber: 4.7 Consensus size: 40
32675221 GCTACTTGTT
*
32675231 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
* *
32675271 CAAATGCCTTCGGGACTTAACCTGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
32675311 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * *
32675350 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
32675391 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
32675416 CATCATTCGA
Statistics
Matches: 126, Mismatches: 14, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
38 2 0.02
39 32 0.25
40 79 0.63
41 13 0.10
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:32675331 original size:79 final size:80
Alignment explanation
Indices: 32675233--32675415 Score: 232
Period size: 79 Copynumber: 2.3 Consensus size: 80
32675223 TACTTGTTCA
* *
32675233 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTA-ACCTG
1 AATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAGACC-G
* *
32675295 GATTTAGTAAC-TCGCACC
63 GATATAGTAACTTAGCA-C
*
32675313 AATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGAT
1 AATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAGACCGGAT
*
32675377 ATAGTCACTTAGCAC
66 ATAGTAACTTAGCAC
*
32675392 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
32675416 CATCATTCGA
Statistics
Matches: 91, Mismatches: 7, Indels: 10
0.84 0.06 0.09
Matches are distributed among these distances:
78 3 0.03
79 58 0.64
80 30 0.33
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (80 bp):
AATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAGACCGGAT
ATAGTAACTTAGCAC
Found at i:32677710 original size:23 final size:23
Alignment explanation
Indices: 32677684--32677729 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
32677674 GTATAGTAAT
32677684 TTAGTCATTCAGTAACTATCAAA
1 TTAGTCATTCAGTAACTATCAAA
32677707 TTAGTCATTCAGTAACTATCAAA
1 TTAGTCATTCAGTAACTATCAAA
32677730 CATTCATGAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.39, C:0.17, G:0.09, T:0.35
Consensus pattern (23 bp):
TTAGTCATTCAGTAACTATCAAA
Found at i:32678485 original size:48 final size:45
Alignment explanation
Indices: 32678414--32678535 Score: 129
Period size: 46 Copynumber: 2.6 Consensus size: 45
32678404 AAGCTGACGC
* * * * *
32678414 CATGTCCCAGATAGGTCTTACACTAGCTTGTATCTCGCGAGGCCAATG
1 CATGTCCCAGACATGTCTTACACTAGCTT-CA-C-CGCAAGGCCAATA
* * *
32678462 CATGTCCCAGACATGTCTTACACTAGCTCTCACCTCAATGCCGATA
1 CATGTCCCAGACATGTCTTACACTAGCT-TCACCGCAAGGCCAATA
32678508 CATGTCCCAGACATGTCTTAC-CTAGCTT
1 CATGTCCCAGACATGTCTTACACTAGCTT
32678536 AAATATCTCG
Statistics
Matches: 65, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
44 1 0.02
45 6 0.09
46 29 0.45
47 1 0.02
48 27 0.42
49 1 0.02
ACGTcount: A:0.24, C:0.31, G:0.17, T:0.28
Consensus pattern (45 bp):
CATGTCCCAGACATGTCTTACACTAGCTTCACCGCAAGGCCAATA
Found at i:32687875 original size:11 final size:11
Alignment explanation
Indices: 32687859--32687891 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
32687849 TATATATTTA
32687859 AAAATAATAAT
1 AAAATAATAAT
32687870 AAAATAAT-AT
1 AAAATAATAAT
*
32687880 AAAAAAATAAT
1 AAAATAATAAT
32687891 A
1 A
32687892 CGGGCGGGCC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
10 9 0.45
11 11 0.55
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (11 bp):
AAAATAATAAT
Found at i:32689959 original size:42 final size:43
Alignment explanation
Indices: 32689856--32690012 Score: 183
Period size: 43 Copynumber: 3.7 Consensus size: 43
32689846 TGTGTTATCG
* * * * *
32689856 TGTAAGACCACGTCTGGGACGTTGGCATCGATTTGTGATTTACG
1 TGTAAGACCATGTCTGGGACATTGGCATCGATATATGATTT-CA
*
32689900 TGTAAGACCATGTCTGGGACATTGGCATCG-TATATGATTTCT
1 TGTAAGACCATGTCTGGGACATTGGCATCGATATATGATTTCA
* * *
32689942 TGTAAGACTC-TGTCTGGGACAGTGGCATCGATATTTGATTACA
1 TGTAAGAC-CATGTCTGGGACATTGGCATCGATATATGATTTCA
* *
32689985 TGTAAGACCACGCCTGGGACATTGGCAT
1 TGTAAGACCATGTCTGGGACATTGGCAT
32690013 TGTACCAGCT
Statistics
Matches: 98, Mismatches: 12, Indels: 7
0.84 0.10 0.06
Matches are distributed among these distances:
42 29 0.30
43 41 0.42
44 28 0.29
ACGTcount: A:0.24, C:0.18, G:0.27, T:0.31
Consensus pattern (43 bp):
TGTAAGACCATGTCTGGGACATTGGCATCGATATATGATTTCA
Found at i:32693399 original size:15 final size:15
Alignment explanation
Indices: 32693379--32693409 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
32693369 ACCTACAAAG
32693379 AAATAAAAAATAATT
1 AAATAAAAAATAATT
*
32693394 AAATAAAATATAATT
1 AAATAAAAAATAATT
32693409 A
1 A
32693410 TTCATATAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (15 bp):
AAATAAAAAATAATT
Found at i:32693611 original size:38 final size:38
Alignment explanation
Indices: 32693569--32693643 Score: 150
Period size: 38 Copynumber: 2.0 Consensus size: 38
32693559 CGGCATGAGC
32693569 TGTAGCAAATTTAATTAAAAACAAAGTTAAAACTTAGG
1 TGTAGCAAATTTAATTAAAAACAAAGTTAAAACTTAGG
32693607 TGTAGCAAATTTAATTAAAAACAAAGTTAAAACTTAG
1 TGTAGCAAATTTAATTAAAAACAAAGTTAAAACTTAG
32693644 TTTATTGTAA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.51, C:0.08, G:0.12, T:0.29
Consensus pattern (38 bp):
TGTAGCAAATTTAATTAAAAACAAAGTTAAAACTTAGG
Found at i:32693690 original size:21 final size:21
Alignment explanation
Indices: 32693662--32693711 Score: 59
Period size: 21 Copynumber: 2.5 Consensus size: 21
32693652 AAAGGAAAAG
32693662 AAAT-GAGCTAAAACAAGCTA
1 AAATCGAGCTAAAACAAGCTA
* * *
32693682 AAATCGAGCTCAAACGAGCTG
1 AAATCGAGCTAAAACAAGCTA
32693703 AAA-CGAGCT
1 AAATCGAGCT
32693712 GAAGTGAGCT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
20 10 0.38
21 16 0.62
ACGTcount: A:0.46, C:0.20, G:0.20, T:0.14
Consensus pattern (21 bp):
AAATCGAGCTAAAACAAGCTA
Found at i:32693699 original size:10 final size:10
Alignment explanation
Indices: 32693666--32693711 Score: 56
Period size: 10 Copynumber: 4.5 Consensus size: 10
32693656 GAAAAGAAAT
32693666 GAGCTAAAAC
1 GAGCTAAAAC
*
32693676 AAGCTAAAATC
1 GAGCTAAAA-C
*
32693687 GAGCTCAAAC
1 GAGCTAAAAC
*
32693697 GAGCTGAAAC
1 GAGCTAAAAC
32693707 GAGCT
1 GAGCT
32693712 GAAGTGAGCT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
10 23 0.74
11 8 0.26
ACGTcount: A:0.43, C:0.22, G:0.22, T:0.13
Consensus pattern (10 bp):
GAGCTAAAAC
Found at i:32693723 original size:10 final size:10
Alignment explanation
Indices: 32693661--32693714 Score: 54
Period size: 10 Copynumber: 5.3 Consensus size: 10
32693651 TAAAGGAAAA
*
32693661 GAAATGAGCT
1 GAAACGAGCT
* *
32693671 AAAACAAGCT
1 GAAACGAGCT
*
32693681 AAAATCGAGCT
1 GAAA-CGAGCT
*
32693692 CAAACGAGCT
1 GAAACGAGCT
32693702 GAAACGAGCT
1 GAAACGAGCT
32693712 GAA
1 GAA
32693715 GTGAGCTGAT
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
10 29 0.78
11 8 0.22
ACGTcount: A:0.46, C:0.19, G:0.22, T:0.13
Consensus pattern (10 bp):
GAAACGAGCT
Found at i:32695195 original size:22 final size:21
Alignment explanation
Indices: 32695162--32695203 Score: 50
Period size: 22 Copynumber: 2.0 Consensus size: 21
32695152 TCAAACCTAC
32695162 ACAAGCATGCAAAATTTACACA
1 ACAAGCATGCAAAA-TTACACA
*
32695184 ACAAGCCA-GCAACATTACAC
1 ACAAG-CATGCAAAATTACAC
32695204 CACCATCACA
Statistics
Matches: 18, Mismatches: 1, Indels: 3
0.82 0.05 0.14
Matches are distributed among these distances:
21 6 0.33
22 10 0.56
23 2 0.11
ACGTcount: A:0.48, C:0.29, G:0.10, T:0.14
Consensus pattern (21 bp):
ACAAGCATGCAAAATTACACA
Found at i:32695782 original size:12 final size:12
Alignment explanation
Indices: 32695760--32695791 Score: 55
Period size: 12 Copynumber: 2.6 Consensus size: 12
32695750 ATTTTCTTTT
32695760 TTTTCTCACATTC
1 TTTT-TCACATTC
32695773 TTTTTCACATTC
1 TTTTTCACATTC
32695785 TTTTTCA
1 TTTTTCA
32695792 ATTTCATTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 15 0.79
13 4 0.21
ACGTcount: A:0.16, C:0.25, G:0.00, T:0.59
Consensus pattern (12 bp):
TTTTTCACATTC
Found at i:32698891 original size:40 final size:40
Alignment explanation
Indices: 32698789--32699002 Score: 292
Period size: 40 Copynumber: 5.4 Consensus size: 40
32698779 ATGATAACCA
* *
32698789 GGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATTCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATA-TCCG
* *
32698829 AGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTATATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATATCCG
*
32698868 GGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATAACCG
1 GGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATATCCG
* *
32698908 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCG
1 GGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATATCCG
*
32698948 GGCTAAGTCCCGAAGGCATTTGAGCAAG-TAGCTATATCC-
1 GGCTAAGTCCCGAAGGCATTTGTGCAAGTTA-CTATATCCG
* *
32698987 GGCTAAATTCCGAAGG
1 GGCTAAGTCCCGAAGG
32699003 TACTTGGTTT
Statistics
Matches: 159, Mismatches: 12, Indels: 7
0.89 0.07 0.04
Matches are distributed among these distances:
39 50 0.31
40 109 0.69
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
GGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATATCCG
Found at i:32699000 original size:119 final size:119
Alignment explanation
Indices: 32698782--32699002 Score: 313
Period size: 119 Copynumber: 1.9 Consensus size: 119
32698772 TATTCGGATG
* *
32698782 ATAACCAGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCGAGCTAAGCCCGAAGGCAT
1 ATAACCAGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATACCGAGCTAAGCCCGAAGGCAT
* * *
32698847 TTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
66 TTGAGCAAGTTACTATATCCGGGCTAAATCCCGAAGGCATTTGTGCAAGTTACT
* * *
32698901 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTAAGTCCCGAAGGC
1 ATAACCAGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAAT-ACCGAGCTAAG-CCCGAAGGC
*
32698965 ATTTGAGCAAG-TAGCTATATCC-GGCTAAATTCCGAAGG
64 ATTTGAGCAAGTTA-CTATATCCGGGCTAAATCCCGAAGG
32699003 TACTTGGTTT
Statistics
Matches: 90, Mismatches: 9, Indels: 6
0.86 0.09 0.06
Matches are distributed among these distances:
118 2 0.02
119 62 0.69
120 26 0.29
ACGTcount: A:0.27, C:0.23, G:0.26, T:0.24
Consensus pattern (119 bp):
ATAACCAGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATACCGAGCTAAGCCCGAAGGCAT
TTGAGCAAGTTACTATATCCGGGCTAAATCCCGAAGGCATTTGTGCAAGTTACT
Found at i:32702006 original size:2 final size:2
Alignment explanation
Indices: 32701999--32702027 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
32701989 TCATGACATG
32701999 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
32702028 GACTAGTCTC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:32703551 original size:19 final size:19
Alignment explanation
Indices: 32703527--32703566 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
32703517 AGATCTTCAC
* *
32703527 TTTTTTTT-TAATTTTGTA
1 TTTTTTTTGAAATTTCGTA
32703545 TTTTTTTTGAAATTTCGTA
1 TTTTTTTTGAAATTTCGTA
32703564 TTT
1 TTT
32703567 CTCTTTTTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 8 0.42
19 11 0.58
ACGTcount: A:0.17, C:0.03, G:0.07, T:0.72
Consensus pattern (19 bp):
TTTTTTTTGAAATTTCGTA
Found at i:32705018 original size:10 final size:10
Alignment explanation
Indices: 32705005--32705057 Score: 52
Period size: 10 Copynumber: 5.2 Consensus size: 10
32704995 TAAATGAAAA
32705005 GAAATGAGCT
1 GAAATGAGCT
*
32705015 GAAACGAGCT
1 GAAATGAGCT
*
32705025 AAAATCGAGCT
1 GAAAT-GAGCT
*
32705036 GAAACGAGCT
1 GAAATGAGCT
* *
32705046 CAAGTGAGCT
1 GAAATGAGCT
32705056 GA
1 GA
32705058 TTGGAGCTGA
Statistics
Matches: 33, Mismatches: 9, Indels: 2
0.75 0.20 0.05
Matches are distributed among these distances:
10 25 0.76
11 8 0.24
ACGTcount: A:0.40, C:0.17, G:0.28, T:0.15
Consensus pattern (10 bp):
GAAATGAGCT
Found at i:32705034 original size:21 final size:20
Alignment explanation
Indices: 32705006--32705057 Score: 77
Period size: 21 Copynumber: 2.5 Consensus size: 20
32704996 AAATGAAAAG
32705006 AAATGAGCTGAAACGAGCTA
1 AAATGAGCTGAAACGAGCTA
*
32705026 AAATCGAGCTGAAACGAGCTC
1 AAAT-GAGCTGAAACGAGCTA
*
32705047 AAGTGAGCTGA
1 AAATGAGCTGA
32705058 TTGGAGCTGA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
20 11 0.38
21 18 0.62
ACGTcount: A:0.40, C:0.17, G:0.27, T:0.15
Consensus pattern (20 bp):
AAATGAGCTGAAACGAGCTA
Found at i:32705035 original size:11 final size:10
Alignment explanation
Indices: 32705005--32705045 Score: 55
Period size: 10 Copynumber: 4.0 Consensus size: 10
32704995 TAAATGAAAA
*
32705005 GAAATGAGCT
1 GAAACGAGCT
32705015 GAAACGAGCT
1 GAAACGAGCT
*
32705025 AAAATCGAGCT
1 GAAA-CGAGCT
32705036 GAAACGAGCT
1 GAAACGAGCT
32705046 CAAGTGAGCT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
10 18 0.67
11 9 0.33
ACGTcount: A:0.41, C:0.17, G:0.27, T:0.15
Consensus pattern (10 bp):
GAAACGAGCT
Found at i:32711867 original size:39 final size:39
Alignment explanation
Indices: 32711769--32711960 Score: 264
Period size: 39 Copynumber: 4.9 Consensus size: 39
32711759 TTCGAATGAT
* * *
32711769 ATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTA
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTA
*
32711809 TATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA
1 -ATCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTA
32711849 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA
32711888 ATCCGGGCTAAGTCCCGAAGGCA-TTGTGCGAGTTACTCTA
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA--CTA
* *
32711928 A-CCGGGCTATGTCCCGAAGGCATTTGAGCGAGT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
32711961 AGCTATATCC
Statistics
Matches: 139, Mismatches: 7, Indels: 11
0.89 0.04 0.07
Matches are distributed among these distances:
38 13 0.09
39 79 0.57
40 20 0.14
41 26 0.19
42 1 0.01
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (39 bp):
ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA
Found at i:32713893 original size:38 final size:38
Alignment explanation
Indices: 32713842--32713919 Score: 156
Period size: 38 Copynumber: 2.1 Consensus size: 38
32713832 CGGGTACTCG
32713842 ACGAGCTATCTTGCACACCCGATGAGTGCCTAAAGTGT
1 ACGAGCTATCTTGCACACCCGATGAGTGCCTAAAGTGT
32713880 ACGAGCTATCTTGCACACCCGATGAGTGCCTAAAGTGT
1 ACGAGCTATCTTGCACACCCGATGAGTGCCTAAAGTGT
32713918 AC
1 AC
32713920 TATCTCCTTG
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 40 1.00
ACGTcount: A:0.27, C:0.27, G:0.23, T:0.23
Consensus pattern (38 bp):
ACGAGCTATCTTGCACACCCGATGAGTGCCTAAAGTGT
Found at i:32719917 original size:40 final size:40
Alignment explanation
Indices: 32719818--32720012 Score: 268
Period size: 40 Copynumber: 4.8 Consensus size: 40
32719808 TTCGAATGAT
* * * *
32719818 ATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAA
*
32719859 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAA
1 ATCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAA
32719899 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
* *
32719939 ATCCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTCTA
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AA
* *
32719980 A-CCGGGCTATGTCCCGAAGGCATTTGAGCGAGT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
32720013 AGCTATATCC
Statistics
Matches: 140, Mismatches: 11, Indels: 7
0.89 0.07 0.04
Matches are distributed among these distances:
39 1 0.01
40 110 0.79
41 28 0.20
42 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
Found at i:32721689 original size:52 final size:50
Alignment explanation
Indices: 32721632--32721754 Score: 156
Period size: 50 Copynumber: 2.4 Consensus size: 50
32721622 ATGAACAAAT
* * * * *
32721632 GAGTTACTTATTGCATGACTTAATTTAATTATGCAAACTTTAACTACCATGG
1 GAGTTACATAATGCATGACTTAATTT-ATGATGCAAAC-TTAACTAACATGA
* * *
32721684 GAGTTACATAATACATGCCATAATTTATGATGCAAACTTAACTAACATGA
1 GAGTTACATAATGCATGACTTAATTTATGATGCAAACTTAACTAACATGA
32721734 GAGTTACATAATGCATGACTT
1 GAGTTACATAATGCATGACTT
32721755 TATTAAATGC
Statistics
Matches: 60, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
50 29 0.48
51 10 0.17
52 21 0.35
ACGTcount: A:0.37, C:0.15, G:0.14, T:0.34
Consensus pattern (50 bp):
GAGTTACATAATGCATGACTTAATTTATGATGCAAACTTAACTAACATGA
Found at i:32721856 original size:39 final size:39
Alignment explanation
Indices: 32721776--32721856 Score: 117
Period size: 39 Copynumber: 2.1 Consensus size: 39
32721766 TAACAAATAT
* * **
32721776 TAATGATGTCCGAACTATGACATAATTAAAGACTCGTAC
1 TAATGATGTCCAAACTATGACATAATTAAAGACACAAAC
*
32721815 TAATGATGTTCAAACTATGACATAATTAAAGACACAAAC
1 TAATGATGTCCAAACTATGACATAATTAAAGACACAAAC
32721854 TAA
1 TAA
32721857 ATAACTAAAG
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
39 37 1.00
ACGTcount: A:0.44, C:0.16, G:0.12, T:0.27
Consensus pattern (39 bp):
TAATGATGTCCAAACTATGACATAATTAAAGACACAAAC
Found at i:32724134 original size:24 final size:24
Alignment explanation
Indices: 32724102--32724149 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
32724092 GACTCGTGGT
32724102 GAATTGATCCCACTAAATCATGGC
1 GAATTGATCCCACTAAATCATGGC
32724126 GAATTGATCCCACTAAATCATGGC
1 GAATTGATCCCACTAAATCATGGC
32724150 ATAATCGGAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (24 bp):
GAATTGATCCCACTAAATCATGGC
Found at i:32727489 original size:40 final size:40
Alignment explanation
Indices: 32727431--32727646 Score: 303
Period size: 40 Copynumber: 5.4 Consensus size: 40
32727421 AAACCAAGTA
* * *
32727431 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* **
32727470 CCTTCTGGACTTAGCCCGGATATAGTAGTTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
32727510 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
** *
32727550 CCTTCGGGACTTAGCCCAAAAATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
32727590 CCTTCGGGACTTAGCCCGGA-ATTAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
*
32727630 CCTTCGAGACTTAGCCC
1 CCTTCGGGACTTAGCCC
32727647 CGTTATCATC
Statistics
Matches: 159, Mismatches: 15, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
39 13 0.08
40 146 0.92
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:32729401 original size:20 final size:20
Alignment explanation
Indices: 32729378--32729417 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
32729368 ATGAAACTAA
32729378 GTATTTTGTGAGATTAACTT
1 GTATTTTGTGAGATTAACTT
32729398 GTATTTTGTGAGATTAACTT
1 GTATTTTGTGAGATTAACTT
32729418 CTCTCAATTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.25, C:0.05, G:0.20, T:0.50
Consensus pattern (20 bp):
GTATTTTGTGAGATTAACTT
Found at i:32747887 original size:43 final size:43
Alignment explanation
Indices: 32747839--32748102 Score: 133
Period size: 43 Copynumber: 6.1 Consensus size: 43
32747829 TTCACCAAGC
*
32747839 CTTAACCCCCTAAGCAGTAGGGTAACAGGTTGAATTTACAGAT
1 CTTAACCCCCTAAGCAGTAGGGTAACAGGTCGAATTTACAGAT
* * * * *** *
32747882 CTTAACCCCATAAGCAGTGGGGAAACAGATCGAAGGCGAC-GAG
1 CTTAACCCCCTAAGCAGTAGGGTAACAGGTCGAA-TTTACAGAT
* * * * *
32747925 CTTTAGCCCCCTAAGTAGTAGGGTAACAAG-CTGAAGTTCATAGAT
1 C-TTAACCCCCTAAGCAGTAGGGTAACAGGTC-GAA-TTTACAGAT
* * * * * ** *
32747970 CTTATCACCCTAAGCAGTAAGGAAACAGATCGAAGATA-ATGAA
1 CTTAACCCCCTAAGCAGTAGGGTAACAGGTCGAATTTACA-GAT
* * * * *
32748013 CTTTAA-CCCCTAACCAGTAGGGTAACAAGCCAAATTTACAGAC
1 C-TTAACCCCCTAAGCAGTAGGGTAACAGGTCGAATTTACAGAT
* * * * *
32748056 CGTAAACCCCTAAGCAGTAAGGTAATA-GTCTGAAAATTACAGAT
1 CTTAACCCCCTAAGCAGTAGGGTAACAGGTC-G-AATTTACAGAT
32748100 CTT
1 CTT
32748103 GTCTCTCTGA
Statistics
Matches: 157, Mismatches: 53, Indels: 21
0.68 0.23 0.09
Matches are distributed among these distances:
42 6 0.04
43 80 0.51
44 67 0.43
45 4 0.03
ACGTcount: A:0.36, C:0.22, G:0.20, T:0.22
Consensus pattern (43 bp):
CTTAACCCCCTAAGCAGTAGGGTAACAGGTCGAATTTACAGAT
Found at i:32747994 original size:88 final size:87
Alignment explanation
Indices: 32747844--32748077 Score: 240
Period size: 87 Copynumber: 2.7 Consensus size: 87
32747834 CAAGCCTTAA
* * * **
32747844 CCCCCTAAGCAGTAGGGTAACAGGTTGAATTTACAGATCTTAACCCCATAAGCAGTGGGGAAACA
1 CCCCCTAAGCAGTAGGGTAACAAGCTGAATTCACAGATCTTAACCCCATAAGCAGTAAGGAAACA
32747909 GATCGAAGGCGACGAGCTTTAG
66 GATCGAAGGCGACGAGCTTTAG
* * *
32747931 CCCCCTAAGTAGTAGGGTAACAAGCTGAAGTTCATAGATCTTATCACCC-TAAGCAGTAAGGAAA
1 CCCCCTAAGCAGTAGGGTAACAAGCTGAA-TTCACAGATCTTAAC-CCCATAAGCAGTAAGGAAA
*** * *
32747995 CAGATCGAAGATAATGAACTTTA-
64 CAGATCGAAGGCGACGAGCTTTAG
* * ** * * *
32748018 ACCCCTAACCAGTAGGGTAACAAGCCAAATTTACAGACCGTAAACCCC-TAAGCAGTAAGG
1 CCCCCTAAGCAGTAGGGTAACAAGCTGAATTCACAGATC-TTAACCCCATAAGCAGTAAGG
32748078 TAATAGTCTG
Statistics
Matches: 121, Mismatches: 23, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
86 22 0.18
87 53 0.44
88 43 0.36
89 3 0.02
ACGTcount: A:0.36, C:0.23, G:0.22, T:0.20
Consensus pattern (87 bp):
CCCCCTAAGCAGTAGGGTAACAAGCTGAATTCACAGATCTTAACCCCATAAGCAGTAAGGAAACA
GATCGAAGGCGACGAGCTTTAG
Found at i:32750508 original size:22 final size:20
Alignment explanation
Indices: 32750482--32750524 Score: 50
Period size: 22 Copynumber: 2.0 Consensus size: 20
32750472 ACTTTATGTG
*
32750482 TTATTCATTTTAAATCATTTTA
1 TTATTCACTTTAAA--ATTTTA
*
32750504 TTATTTACTTTAAAATTTTA
1 TTATTCACTTTAAAATTTTA
32750524 T
1 T
32750525 ATCTATTATC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 7 0.37
22 12 0.63
ACGTcount: A:0.33, C:0.07, G:0.00, T:0.60
Consensus pattern (20 bp):
TTATTCACTTTAAAATTTTA
Found at i:32759613 original size:28 final size:27
Alignment explanation
Indices: 32759550--32759619 Score: 131
Period size: 27 Copynumber: 2.6 Consensus size: 27
32759540 ATAGTGAGTC
32759550 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
32759577 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
32759605 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
32759620 GTACAAATTT
Statistics
Matches: 42, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
27 23 0.55
28 19 0.45
ACGTcount: A:0.31, C:0.27, G:0.13, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:32781491 original size:18 final size:17
Alignment explanation
Indices: 32781470--32781504 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
32781460 AAATTTAAAG
32781470 AGAGTGAACAAAAAGAGA
1 AGAGTGAA-AAAAAGAGA
*
32781488 AGAGTGAAAAAGAGAGA
1 AGAGTGAAAAAAAGAGA
32781505 GAAAATAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.60, C:0.03, G:0.31, T:0.06
Consensus pattern (17 bp):
AGAGTGAAAAAAAGAGA
Found at i:32781529 original size:14 final size:16
Alignment explanation
Indices: 32781495--32781528 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
32781485 AGAAGAGTGA
32781495 AAAAGAGAGAGAAAAT
1 AAAAGAGAGAGAAAAT
*
32781511 AAAAGTGAGA-AAAAT
1 AAAAGAGAGAGAAAAT
32781526 AAA
1 AAA
32781529 GGAAAACAAG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 8 0.47
16 9 0.53
ACGTcount: A:0.71, C:0.00, G:0.21, T:0.09
Consensus pattern (16 bp):
AAAAGAGAGAGAAAAT
Found at i:32788664 original size:27 final size:26
Alignment explanation
Indices: 32788606--32788739 Score: 155
Period size: 27 Copynumber: 5.0 Consensus size: 26
32788596 AGGAAGCGTC
* *
32788606 CTGGTGGCTATGCCACAATTTATCTAAT
1 CTGGTGGCTCTGCCAC-ATATATCT-AT
32788634 CTGGTGGCTCTGCCACATATATCTAT
1 CTGGTGGCTCTGCCACATATATCTAT
*
32788660 CCTGGTGGCTATGCCACA-ATTATCTGAT
1 -CTGGTGGCTCTGCCACATA-TATCT-AT
*
32788688 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACATATATCT-AT
*
32788715 CTAGTGGCTCTGCCACA-ATATCTAT
1 CTGGTGGCTCTGCCACATATATCTAT
32788740 ATCTGGTGAC
Statistics
Matches: 95, Mismatches: 7, Indels: 11
0.84 0.06 0.10
Matches are distributed among these distances:
25 1 0.01
26 9 0.09
27 67 0.71
28 18 0.19
ACGTcount: A:0.21, C:0.25, G:0.19, T:0.34
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATATATCTAT
Found at i:32788701 original size:54 final size:54
Alignment explanation
Indices: 32788604--32788747 Score: 218
Period size: 54 Copynumber: 2.6 Consensus size: 54
32788594 GGAGGAAGCG
32788604 TCCTGGTGGCTATGCCACAATTTATCTAATCTGGTGGCTCTGCCACATATATCTA
1 TCCTGGTGGCTATGCCACAA-TTATCTAATCTGGTGGCTCTGCCACATATATCTA
* *
32788659 TCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTG
1 TCCTGGTGGCTATGCCACAATTATCTAATCTGGTGGCTCTGCCACATATATCTA
* * *
32788713 TTCTAGTGGCTCTGCCACAA-TATCTATATCTGGTG
1 TCCTGGTGGCTATGCCACAATTATCTA-ATCTGGTG
32788748 ACTTCGTCAC
Statistics
Matches: 82, Mismatches: 6, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
53 5 0.06
54 57 0.70
55 20 0.24
ACGTcount: A:0.20, C:0.25, G:0.20, T:0.35
Consensus pattern (54 bp):
TCCTGGTGGCTATGCCACAATTATCTAATCTGGTGGCTCTGCCACATATATCTA
Found at i:32788759 original size:81 final size:81
Alignment explanation
Indices: 32788606--32788765 Score: 200
Period size: 81 Copynumber: 2.0 Consensus size: 81
32788596 AGGAAGCGTC
* * *
32788606 CTGGTGGCTATGCCACAATTTATCTAATCTGGTGGCTCTGCCACATATATCTATCCTGGTGGCTA
1 CTGGTGGCTATGCCACAATATATCTAATCTAGTGGCTCTGCCACATATATCTATCCTGGTGACTA
32788671 TGCCACAATTATCTGAT
66 TGCCACAA-TATCTGAT
* ** *
32788688 CTGGTGGCTCTGCCAC-ATATATCTGTTCTAGTGGCTCTGCCACA-ATATCTATATCTGGTGACT
1 CTGGTGGCTATGCCACAATATATCTAATCTAGTGGCTCTGCCACATATATCTAT-CCTGGTGACT
*
32788751 -TCGTCACAATATCTG
65 AT-GCCACAATATCTG
32788766 GCAGCCTCGC
Statistics
Matches: 68, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
80 15 0.22
81 38 0.56
82 15 0.22
ACGTcount: A:0.21, C:0.25, G:0.19, T:0.34
Consensus pattern (81 bp):
CTGGTGGCTATGCCACAATATATCTAATCTAGTGGCTCTGCCACATATATCTATCCTGGTGACTA
TGCCACAATATCTGAT
Found at i:32796990 original size:2 final size:2
Alignment explanation
Indices: 32796983--32797010 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
32796973 GCTCTTGCAC
32796983 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
32797011 GTTTGCACAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:32797778 original size:40 final size:40
Alignment explanation
Indices: 32797734--32797903 Score: 159
Period size: 40 Copynumber: 4.2 Consensus size: 40
32797724 CTGAGTCCCA
*
32797734 AAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCG
1 AAGGCATTTGTGC-AAGTGACTAAATCCGGACTAAGATCCG
* * *
32797774 AAGGCATTCGTGCGAGTTACTAAATCCGGACTAAGATCCG
1 AAGGCATTTGTGCAAGTGACTAAATCCGGACTAAGATCCG
* * **
32797814 AAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAG-TCCCG
1 AAGGCATTTGTGCAAGTGACTAAATCCGGACTAAGAT-CCG
* * * * *
32797854 AAGGCATCTGTGCGAGTTACTATAA-CCGGGCTATG-TCCCG
1 AAGGCATTTGTGCAAGTGACTA-AATCCGGACTAAGAT-CCG
32797894 AAGGCATTTG
1 AAGGCATTTG
32797904 AATGAGTAGC
Statistics
Matches: 116, Mismatches: 11, Indels: 6
0.87 0.08 0.05
Matches are distributed among these distances:
39 1 0.01
40 107 0.92
41 8 0.07
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (40 bp):
AAGGCATTTGTGCAAGTGACTAAATCCGGACTAAGATCCG
Found at i:32797921 original size:80 final size:80
Alignment explanation
Indices: 32797752--32797936 Score: 195
Period size: 80 Copynumber: 2.3 Consensus size: 80
32797742 GTGCTAAGTG
**
32797752 ACTATATCCGGACTAAGATCCGAAGGCATTCGTGCGAGTTACTAAATCCGGACTAAGATCCGAAG
1 ACTATATCCGGGTTAAGATCCGAAGGCATTCGTGCGAGTTACTAAATCCGGACTAAGATCCGAAG
**
32797817 GCATTTGTGCGAGTT
66 GCATTTGAACGAGTT
* * *
32797832 ACTAAATCCGGGTTAAG-TCCCGAAGGCA-TCTGTGCGAGTTACTATAA-CCGGGCTATG-TCCC
1 ACTATATCCGGGTTAAGAT-CCGAAGGCATTC-GTGCGAGTTACTA-AATCCGGACTAAGAT-CC
*
32797893 GAAGGCATTTGAATGAG-T
62 GAAGGCATTTGAACGAGTT
32797911 AGCTATATCC-GGTTAA-ACTCCGAAGG
1 A-CTATATCCGGGTTAAGA-TCCGAAGG
32797937 TACGTGATTC
Statistics
Matches: 89, Mismatches: 9, Indels: 15
0.79 0.08 0.13
Matches are distributed among these distances:
79 19 0.21
80 68 0.76
81 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.25, T:0.25
Consensus pattern (80 bp):
ACTATATCCGGGTTAAGATCCGAAGGCATTCGTGCGAGTTACTAAATCCGGACTAAGATCCGAAG
GCATTTGAACGAGTT
Found at i:32799413 original size:8 final size:8
Alignment explanation
Indices: 32799400--32799429 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
32799390 AAATCGGCAC
32799400 AAGCCGAA
1 AAGCCGAA
32799408 AAGCCGAA
1 AAGCCGAA
*
32799416 ATGCCGAA
1 AAGCCGAA
32799424 AAGCCG
1 AAGCCG
32799430 GTATTTTGAG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.43, C:0.27, G:0.27, T:0.03
Consensus pattern (8 bp):
AAGCCGAA
Found at i:32799877 original size:27 final size:26
Alignment explanation
Indices: 32799819--32799952 Score: 146
Period size: 27 Copynumber: 5.0 Consensus size: 26
32799809 AGGAAGCGTC
* * *
32799819 CTGGTGGCTATGCCACAATTTATCTAAT
1 CTGGTGGCTCTGCCAC-ATATATCT-GT
32799847 CTGGTGGCTCTGCCACATATATCTGT
1 CTGGTGGCTCTGCCACATATATCTGT
*
32799873 CCTGGTGGCTATGCCACA-ATTATCTGAT
1 -CTGGTGGCTCTGCCACATA-TATCTG-T
*
32799901 CTGGTGGCTCTGCCACATATATTTGTT
1 CTGGTGGCTCTGCCACATATATCTG-T
*
32799928 CTAGTGGCTCTGCCACA-ATATCTGT
1 CTGGTGGCTCTGCCACATATATCTGT
32799953 ATCTGGTGAC
Statistics
Matches: 93, Mismatches: 9, Indels: 11
0.82 0.08 0.10
Matches are distributed among these distances:
25 1 0.01
26 8 0.09
27 67 0.72
28 17 0.18
ACGTcount: A:0.19, C:0.25, G:0.21, T:0.35
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATATATCTGT
Found at i:32799915 original size:54 final size:54
Alignment explanation
Indices: 32799816--32799960 Score: 220
Period size: 54 Copynumber: 2.7 Consensus size: 54
32799806 TGGAGGAAGC
*
32799816 GTCCTGGTGGCTATGCCACAATTTATCTAATCTGGTGGCTCTGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAA-TTATCTGATCTGGTGGCTCTGCCACATATATCT
*
32799871 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATTT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
* * *
32799925 GTTCTAGTGGCTCTGCCACAA-TATCTGTATCTGGTG
1 GTCCTGGTGGCTATGCCACAATTATCTG-ATCTGGTG
32799961 ACTTCGTCAC
Statistics
Matches: 84, Mismatches: 5, Indels: 3
0.91 0.05 0.03
Matches are distributed among these distances:
53 6 0.07
54 57 0.68
55 21 0.25
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.35
Consensus pattern (54 bp):
GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
Found at i:32801262 original size:52 final size:50
Alignment explanation
Indices: 32801205--32801327 Score: 174
Period size: 50 Copynumber: 2.4 Consensus size: 50
32801195 ATGAACAAAT
* * *
32801205 GAGTTACTTATTGCATGACTTAATTTAATGATGCAAACTTTAACTAACATGG
1 GAGTTACATAATGCATGACTTAATTT-ATGATGCAAAC-TTAACTAACATGA
* * *
32801257 GAGTTACAAAATGCATGCCATAATTTATGATGCAAACTTAACTAACATGA
1 GAGTTACATAATGCATGACTTAATTTATGATGCAAACTTAACTAACATGA
32801307 GAGTTACATAATGCATGACTT
1 GAGTTACATAATGCATGACTT
32801328 TGTTAAATGC
Statistics
Matches: 62, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
50 30 0.48
51 11 0.18
52 21 0.34
ACGTcount: A:0.37, C:0.15, G:0.15, T:0.33
Consensus pattern (50 bp):
GAGTTACATAATGCATGACTTAATTTATGATGCAAACTTAACTAACATGA
Found at i:32801403 original size:39 final size:39
Alignment explanation
Indices: 32801341--32801429 Score: 142
Period size: 39 Copynumber: 2.3 Consensus size: 39
32801331 TAAATGCAGA
*
32801341 ACACATATTAATGATGTCCAAACTATGACATAATTAAAG
1 ACACATACTAATGATGTCCAAACTATGACATAATTAAAG
* *
32801380 ACTCATACTAATGATGTTCAAACTATGACATAATTAAAG
1 ACACATACTAATGATGTCCAAACTATGACATAATTAAAG
*
32801419 ACACAAACTAA
1 ACACATACTAA
32801430 AATAACTAAA
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 45 1.00
ACGTcount: A:0.47, C:0.17, G:0.09, T:0.27
Consensus pattern (39 bp):
ACACATACTAATGATGTCCAAACTATGACATAATTAAAG
Found at i:32805872 original size:53 final size:53
Alignment explanation
Indices: 32805695--32805901 Score: 198
Period size: 53 Copynumber: 3.8 Consensus size: 53
32805685 ATTAGGGTTT
* * * * *
32805695 AAGGATACCAAGTAAGACCATGCCAAGGCATGGCATTGGTAAGTTTTACAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAG-TTCATAAGGC
* * * * * * * * * *
32805749 AAGGAAATCGTGTAAGACCATGTCAAGATATGCCATTGATAAACTACAATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGT-AAGTTC-ATAAGGC
* * * *
32805804 AAAGATCCCATGTAAGACCATGCCAAGGCATGGCAATGGTGAGTTCATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCATAAGGC
* *
32805857 AAGGATACCACGTAAGACCATGTCAAGACATGGCAATGGTAAGTT
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTT
32805902 TAAAAAGAAA
Statistics
Matches: 118, Mismatches: 33, Indels: 5
0.76 0.21 0.03
Matches are distributed among these distances:
53 46 0.39
54 35 0.30
55 37 0.31
ACGTcount: A:0.37, C:0.18, G:0.24, T:0.20
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCATAAGGC
Found at i:32811748 original size:39 final size:39
Alignment explanation
Indices: 32811690--32811779 Score: 144
Period size: 39 Copynumber: 2.3 Consensus size: 39
32811680 TGATACTTGA
*
32811690 AAACATATCCGGACTTGAGGTCCGCAGGCTACGTGCTGG
1 AAACATATCCGGACCTGAGGTCCGCAGGCTACGTGCTGG
* *
32811729 AAACATATTCGGACCTGAGGTCCGCAGGCTATGTGCTGG
1 AAACATATCCGGACCTGAGGTCCGCAGGCTACGTGCTGG
*
32811768 AAATATATCCGG
1 AAACATATCCGG
32811780 GCTTAAAGTC
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 46 1.00
ACGTcount: A:0.26, C:0.23, G:0.29, T:0.22
Consensus pattern (39 bp):
AAACATATCCGGACCTGAGGTCCGCAGGCTACGTGCTGG
Found at i:32815302 original size:40 final size:40
Alignment explanation
Indices: 32815257--32815423 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
32815247 CGGAATATAA
32815257 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
32815297 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
32815337 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
32815377 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
32815416 CCGGATAT
1 CCGGATAT
32815424 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:32823274 original size:40 final size:40
Alignment explanation
Indices: 32823229--32823396 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
32823219 CGGAATATAA
32823229 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
32823269 CCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
32823309 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
32823349 CCGGATATAATTTCCAGCATAATTGTCTTCGGGAT-TTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGG-TCTTAGC
32823389 CCGGATAT
1 CCGGATAT
32823397 CATTCAATTT
Statistics
Matches: 103, Mismatches: 23, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
39 1 0.01
40 101 0.98
41 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:32823379 original size:80 final size:80
Alignment explanation
Indices: 32823245--32823394 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 80
32823235 ATAATCACGT
*
32823245 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGAT-TTAGC
32823309 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * * *
32823325 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTTAG
32823388 CCCGGAT
64 CCCGGAT
32823395 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
79 3 0.05
80 57 0.93
81 1 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Found at i:32827583 original size:39 final size:39
Alignment explanation
Indices: 32827539--32827853 Score: 549
Period size: 39 Copynumber: 8.1 Consensus size: 39
32827529 ATTATATTAT
* *
32827539 CAGCACAAAGCCTGCGGGACTTTAACCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
*
32827578 CAGCACGAAGCCTGCGGGACTTTGGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
32827617 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
* * *
32827656 TAGCACGAAGCCTGCGGGACTTTGGCCCGGATATATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
32827695 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
* *
32827734 CAGCACGAAGCCTGCGGGACTTTGGCCCGGATATATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
*
32827773 CAGCACGAAGCCTGCAGGACTTTAGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
32827812 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
32827851 CAG
1 CAG
32827854 TGTCTTGCAT
Statistics
Matches: 260, Mismatches: 16, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 260 1.00
ACGTcount: A:0.23, C:0.30, G:0.26, T:0.21
Consensus pattern (39 bp):
CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
Found at i:32830145 original size:2 final size:2
Alignment explanation
Indices: 32830138--32830163 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
32830128 GCCCTTGCAC
32830138 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
32830164 GTTTGCACAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:32831102 original size:40 final size:40
Alignment explanation
Indices: 32830877--32831074 Score: 276
Period size: 40 Copynumber: 5.0 Consensus size: 40
32830867 TCGAATGATG
* * * *
32830877 TCCGGGCTAAG-TCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGACTAAGAT-CCGAAGGCATTTGTGC-GAGTTACTAAA
*
32830917 TCCGGACTAAGATCCAAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
32830957 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
32830997 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
** *
32831037 TCCGGGTTAAG-TCTCGAAGGCATTTGTGCGAGCTACTA
1 TCCGGACTAAGATC-CGAAGGCATTTGTGCGAGTTACTA
32831075 TAACCGGGCT
Statistics
Matches: 146, Mismatches: 9, Indels: 6
0.91 0.06 0.04
Matches are distributed among these distances:
39 2 0.01
40 136 0.93
41 8 0.05
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.26
Consensus pattern (40 bp):
TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:32831109 original size:80 final size:80
Alignment explanation
Indices: 32830877--32831135 Score: 248
Period size: 80 Copynumber: 3.2 Consensus size: 80
32830867 TCGAATGATG
* * * *
32830877 TCCGGGCTAAG-TCCCGAAGGC-TTTGTGCTAAG-TGACTATATCCGGACTAAGATCCAAAGGCA
1 TCCGGGTTAAGAT-CCGAAGGCATTTGTGC-GAGCT-ACTAAATCCGGACTAAGATCCGAAGGCA
**
32830939 TTTGTGCGAGTTACTAAA
63 TTTGAACGAGTTACTAAA
** *
32830957 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGTTAAGATCCGAAGGCATTTGTGCGAGCTACTAAATCCGGACTAAGATCCGAAGGCATTT
**
32831022 GTGCGAGTTACTAAA
66 GAACGAGTTACTAAA
* * *
32831037 TCCGGGTTAAG-TCTCGAAGGCATTTGTGCGAGCTACTATAA-CCGGGCTATG-TCCCGAAGGTA
1 TCCGGGTTAAGATC-CGAAGGCATTTGTGCGAGCTACTA-AATCCGGACTAAGAT-CCGAAGGCA
*
32831099 TTTGAACGAG-TAGCTATA
63 TTTGAACGAGTTA-CTAAA
32831117 TCC-GGTTAA-ACTCCGAAGG
1 TCCGGGTTAAGA-TCCGAAGG
32831136 TACGTGATTC
Statistics
Matches: 157, Mismatches: 13, Indels: 19
0.83 0.07 0.10
Matches are distributed among these distances:
79 17 0.11
80 129 0.82
81 11 0.07
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.26
Consensus pattern (80 bp):
TCCGGGTTAAGATCCGAAGGCATTTGTGCGAGCTACTAAATCCGGACTAAGATCCGAAGGCATTT
GAACGAGTTACTAAA
Found at i:32831121 original size:120 final size:120
Alignment explanation
Indices: 32830877--32831109 Score: 269
Period size: 120 Copynumber: 1.9 Consensus size: 120
32830867 TCGAATGATG
* *
32830877 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAAGATCCAAAGGCATTT
1 TCCGGACTAAGTCCCGAAGGCTTTGTGCTAAGTGACTAAATCCGGACTAAGATCCAAAGGCATTT
* **
32830942 GTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
66 GTGCGAGCTACTAAATCCGGACTAAGATCCGAAGGCATTTGAACGAGTTACTAAA
* * ** *
32830997 TCCGGACTAAGAT-CCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCTCGAAGGCA
1 TCCGGACTAAG-TCCCGAAGGC-TTTGTGCTAAGTGACTAAATCCGGACTAAGATC-CAAAGGCA
* * *
32831059 TTTGTGCGAGCTACTATAA-CCGGGCTATG-TCCCGAAGGTATTTGAACGAGT
63 TTTGTGCGAGCTACTA-AATCCGGACTAAGAT-CCGAAGGCATTTGAACGAGT
32831110 AGCTATATCC
Statistics
Matches: 95, Mismatches: 13, Indels: 10
0.81 0.11 0.08
Matches are distributed among these distances:
119 3 0.03
120 82 0.86
121 10 0.11
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.26
Consensus pattern (120 bp):
TCCGGACTAAGTCCCGAAGGCTTTGTGCTAAGTGACTAAATCCGGACTAAGATCCAAAGGCATTT
GTGCGAGCTACTAAATCCGGACTAAGATCCGAAGGCATTTGAACGAGTTACTAAA
Found at i:32832609 original size:80 final size:80
Alignment explanation
Indices: 32832471--32832630 Score: 293
Period size: 80 Copynumber: 2.0 Consensus size: 80
32832461 CTCGGGTACG
* *
32832471 GGGTGTTACAGTTTTATTGGTATCAGAGCTACGATTTAGTCGATTCTAGGACTACCGTAATGCGT
1 GGGTATTACAATTTTATTGGTATCAGAGCTACGATTTAGTCGATTCTAGGACTACCGTAATGCGT
32832536 TTGGGTCTAGCTATA
66 TTGGGTCTAGCTATA
*
32832551 GGGTATTACAATTTTATTGGTATCAGAGCTACGGTTTAGTCGATTCTAGGACTACCGTAATGCGT
1 GGGTATTACAATTTTATTGGTATCAGAGCTACGATTTAGTCGATTCTAGGACTACCGTAATGCGT
32832616 TTGGGTCTAGCTATA
66 TTGGGTCTAGCTATA
32832631 CATGCCATTT
Statistics
Matches: 77, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
80 77 1.00
ACGTcount: A:0.23, C:0.15, G:0.26, T:0.36
Consensus pattern (80 bp):
GGGTATTACAATTTTATTGGTATCAGAGCTACGATTTAGTCGATTCTAGGACTACCGTAATGCGT
TTGGGTCTAGCTATA
Found at i:32835911 original size:27 final size:28
Alignment explanation
Indices: 32835854--32835923 Score: 115
Period size: 27 Copynumber: 2.5 Consensus size: 28
32835844 AAACTTGTAC
*
32835854 AGCACTAAGTGTGCGAGTTTGATCATGT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
32835882 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
32835909 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
32835924 GACTCACTAT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 23 0.57
28 17 0.43
ACGTcount: A:0.27, C:0.14, G:0.29, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:32835934 original size:27 final size:27
Alignment explanation
Indices: 32835854--32835935 Score: 69
Period size: 27 Copynumber: 3.0 Consensus size: 27
32835844 AAACTTGTAC
* * *
32835854 AGCACTAAGTGTGCGAGTTTGA-TCATGT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
32835882 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
32835909 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
32835936 GCTTTTGAAT
Statistics
Matches: 48, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
26 1 0.02
27 29 0.60
28 18 0.38
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:32842248 original size:40 final size:40
Alignment explanation
Indices: 32842191--32842376 Score: 218
Period size: 40 Copynumber: 4.7 Consensus size: 40
32842181 TCGAATGATG
* * * *
32842191 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGACTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
32842231 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
32842271 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
** *
32842311 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGCTACTATAA
1 TCCGGACTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* * *
32842352 -CCGGGCTATGTCCCGAAGGTATTTG
1 TCCGGACTAAGTCCCGAAGGCATTTG
32842377 AACGAGTAGC
Statistics
Matches: 132, Mismatches: 10, Indels: 8
0.88 0.07 0.05
Matches are distributed among these distances:
39 1 0.01
40 121 0.92
41 10 0.08
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGACTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Done.