Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr03 135709677
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 135709677
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 113 of 438
Found at i:32842383 original size:80 final size:79
Alignment explanation
Indices: 32842244--32842399 Score: 192
Period size: 80 Copynumber: 2.0 Consensus size: 79
32842234 GGACTAAGAT
* **
32842244 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTA-CT
1 CCGAAGGCATTTGTGCGAGCTACTAAATCCGGACTAAGATCCGAAGGCATTTGAACGAG-TAGCT
32842308 AAATCCGGGTTAAGTC
65 AAATCC-GGTTAAGTC
* * *
32842324 CCGAAGGCATTTGTGCGAGCTACTATAA-CCGGGCTATG-TCCCGAAGGTATTTGAACGAGTAGC
1 CCGAAGGCATTTGTGCGAGCTACTA-AATCCGGACTAAGAT-CCGAAGGCATTTGAACGAGTAGC
*
32842387 TATATCCGGTTAA
64 TAAATCCGGTTAA
32842400 ACTCCGAAGG
Statistics
Matches: 66, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
79 9 0.14
80 55 0.83
81 2 0.03
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGCTACTAAATCCGGACTAAGATCCGAAGGCATTTGAACGAGTAGCTA
AATCCGGTTAAGTC
Found at i:32847425 original size:47 final size:47
Alignment explanation
Indices: 32847364--32847536 Score: 176
Period size: 47 Copynumber: 3.7 Consensus size: 47
32847354 TAGATATTTG
*
32847364 GGCATTCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTA
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTA
* ** * * *
32847411 GGCATCCGAGCTCGTTGAGTTGAGTTTGAGTTCACTTATGGATGCGAAC--
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTA
32847460 -G--TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTA
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTA
* * * *
32847504 GACATCCGAGCTCGTTAAGTTGAGTCTGAGTTC
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTC
32847537 ACTTATGGAC
Statistics
Matches: 100, Mismatches: 17, Indels: 18
0.74 0.13 0.13
Matches are distributed among these distances:
42 3 0.03
43 4 0.04
45 2 0.02
46 26 0.26
47 55 0.55
48 3 0.03
50 4 0.04
51 3 0.03
ACGTcount: A:0.22, C:0.18, G:0.29, T:0.30
Consensus pattern (47 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:32847488 original size:46 final size:46
Alignment explanation
Indices: 32847415--32847590 Score: 153
Period size: 46 Copynumber: 3.8 Consensus size: 46
32847405 TAACTAGGCA
* **
32847415 TCCGAGCTCGTTGAGTTGAGTTTGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * * *
32847461 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGACA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-ACG
* * * * *
32847508 TCCGAGCTCGTTAAGTTGAGTCTGAGTTCACTTATGGACGGGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* *
32847554 -CCCAAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAA-CTCGTTGAGTTGAGTCCGAGTTCACTTATGG
32847591 GCGGGTTACA
Statistics
Matches: 101, Mismatches: 21, Indels: 16
0.73 0.15 0.12
Matches are distributed among these distances:
43 4 0.04
45 5 0.05
46 58 0.57
47 29 0.29
48 2 0.02
50 3 0.03
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:32847534 original size:93 final size:92
Alignment explanation
Indices: 32847370--32847583 Score: 356
Period size: 93 Copynumber: 2.3 Consensus size: 92
32847360 TTTGGGCATT
* *
32847370 CGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCATCCGAGCTCGTTGAGTTGAG
1 CGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGACATCCGAGCTCGTTAAGTTGAG
* *
32847435 TTTGAGTTCACTTATGGATGCGAACGTC
66 TCTGAGTTCACTTATGGACGCGAACG-C
32847463 CGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGACATCCGAGCTCGTTAAGTTGAG
1 CGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGACATCCGAGCTCGTTAAGTTGAG
*
32847528 TCTGAGTTCACTTATGGACGGGAACGC
66 TCTGAGTTCACTTATGGACGCGAACGC
*
32847555 CCAAGCTCGTTGAGTTGAGTCCGAGTTCG
1 CGAA-CTCGTTGAGTTGAGTCCGAGTTCG
32847584 CTTATGGGCG
Statistics
Matches: 114, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
92 4 0.04
93 110 0.96
ACGTcount: A:0.22, C:0.20, G:0.30, T:0.29
Consensus pattern (92 bp):
CGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGACATCCGAGCTCGTTAAGTTGAG
TCTGAGTTCACTTATGGACGCGAACGC
Found at i:32851878 original size:13 final size:13
Alignment explanation
Indices: 32851860--32851885 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
32851850 TGTGGCTCAA
32851860 GACCAACCAAAAT
1 GACCAACCAAAAT
32851873 GACCAACCAAAAT
1 GACCAACCAAAAT
32851886 AAGTAAAATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.31, G:0.08, T:0.08
Consensus pattern (13 bp):
GACCAACCAAAAT
Found at i:32855631 original size:28 final size:29
Alignment explanation
Indices: 32855570--32855632 Score: 76
Period size: 28 Copynumber: 2.2 Consensus size: 29
32855560 TCTTTTAATT
**
32855570 TTAAAATTAAATAAATTAATTCCTCTTAA
1 TTAAAATTAAATAAATTAATTCAACTTAA
* *
32855599 -AAAAATTAAATAATTTAATTCAAC-TAA
1 TTAAAATTAAATAAATTAATTCAACTTAA
32855626 TTAAAAT
1 TTAAAAT
32855633 ATTAATATTT
Statistics
Matches: 28, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
27 3 0.11
28 25 0.89
ACGTcount: A:0.54, C:0.08, G:0.00, T:0.38
Consensus pattern (29 bp):
TTAAAATTAAATAAATTAATTCAACTTAA
Found at i:32855682 original size:18 final size:19
Alignment explanation
Indices: 32855649--32855685 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
32855639 ATTTTTATCA
*
32855649 ATTATACATAATTTTAATT
1 ATTATACATAAATTTAATT
32855668 ATTATA-ATAAATTTAATT
1 ATTATACATAAATTTAATT
32855686 TTTAAAATTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 11 0.65
19 6 0.35
ACGTcount: A:0.46, C:0.03, G:0.00, T:0.51
Consensus pattern (19 bp):
ATTATACATAAATTTAATT
Found at i:32861091 original size:30 final size:28
Alignment explanation
Indices: 32861026--32861091 Score: 80
Period size: 30 Copynumber: 2.3 Consensus size: 28
32861016 AAAAATGAAA
32861026 ATCATTTTATGAGCCTAAGGGCAAAATC
1 ATCATTTTATGAGCCTAAGGGCAAAATC
* *
32861054 ATAATTTTATGAAAGTCTAAGGGCAAAA-C
1 ATCATTTTATG--AGCCTAAGGGCAAAATC
32861083 GATCATTTT
1 -ATCATTTT
32861092 GTCGAAGTAG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
28 10 0.31
29 1 0.03
30 21 0.66
ACGTcount: A:0.38, C:0.14, G:0.17, T:0.32
Consensus pattern (28 bp):
ATCATTTTATGAGCCTAAGGGCAAAATC
Found at i:32861488 original size:48 final size:48
Alignment explanation
Indices: 32861417--32861654 Score: 266
Period size: 48 Copynumber: 5.0 Consensus size: 48
32861407 ATTAGGGTTA
* * * *
32861417 TATGTGAGCCAATGTAAGACCATGTTTGGAACATGGCATCGACATTGT
1 TATGTAAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACATTGT
* * * * *
32861465 TGTG-AGAGCTAGTGTAAGACCATGTCTGGGACATGGCGTCGACCTTGA
1 TATGTA-AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACATTGT
* * * ** *
32861513 TATGTGAGCCAATGTAAGACCATGTTTGAAACATGGCATC-AGTATTGT
1 TATGTAAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGA-CATTGT
*
32861561 TATGTAAGCCAGTGTAAGACCATGTCTGGGACATGGCATC-AGTATTGT
1 TATGTAAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGA-CATTGT
* *
32861609 TATGTAAGCCAGTGTAAGACCATGTCAGGGACATGGCATCGGCATT
1 TATGTAAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACATT
32861655 TTACCCATTG
Statistics
Matches: 158, Mismatches: 28, Indels: 8
0.81 0.14 0.04
Matches are distributed among these distances:
47 1 0.01
48 157 0.99
ACGTcount: A:0.28, C:0.17, G:0.27, T:0.28
Consensus pattern (48 bp):
TATGTAAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACATTGT
Found at i:32861643 original size:96 final size:95
Alignment explanation
Indices: 32861416--32861654 Score: 304
Period size: 96 Copynumber: 2.5 Consensus size: 95
32861406 TATTAGGGTT
* *
32861416 ATATGTGAGCCAATGTAAGACCATGTTTGGAACATGGCATCGACATTGTTGTGAGAGCTAGTGTA
1 ATATGTGAGCCAATGTAAGACCATGTTTGGAACATGGCATCGACATTGTTATGAGAGCCAGTGTA
*
32861481 AGACCATGTCTGGGACATGGCGTCGACCTTG
66 AGACCATGTCTGGGACATGGCATCGA-CTTG
* *
32861512 ATATGTGAGCCAATGTAAGACCATGTTTGAAACATGGCATC-AGTATTGTTATGTA-AGCCAGTG
1 ATATGTGAGCCAATGTAAGACCATGTTTGGAACATGGCATCGA-CATTGTTATG-AGAGCCAGTG
32861575 TAAGACCATGTCTGGGACATGGCATCAGTA-TTG
64 TAAGACCATGTCTGGGACATGGCATC-G-ACTTG
* * * ** * *
32861608 TTATGTAAGCCAGTGTAAGACCATGTCAGGGACATGGCATCGGCATT
1 ATATGTGAGCCAATGTAAGACCATGTTTGGAACATGGCATCGACATT
32861655 TTACCCATTG
Statistics
Matches: 124, Mismatches: 14, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
95 1 0.01
96 120 0.97
97 2 0.02
98 1 0.01
ACGTcount: A:0.28, C:0.17, G:0.27, T:0.28
Consensus pattern (95 bp):
ATATGTGAGCCAATGTAAGACCATGTTTGGAACATGGCATCGACATTGTTATGAGAGCCAGTGTA
AGACCATGTCTGGGACATGGCATCGACTTG
Found at i:32863367 original size:24 final size:24
Alignment explanation
Indices: 32863340--32863390 Score: 84
Period size: 24 Copynumber: 2.1 Consensus size: 24
32863330 GGAGCAGTGG
* *
32863340 CGGATGATGTAGCGAGTAATGTGC
1 CGGATGATATAGAGAGTAATGTGC
32863364 CGGATGATATAGAGAGTAATGTGC
1 CGGATGATATAGAGAGTAATGTGC
32863388 CGG
1 CGG
32863391 CTCCCGCTGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.27, C:0.12, G:0.37, T:0.24
Consensus pattern (24 bp):
CGGATGATATAGAGAGTAATGTGC
Found at i:32873754 original size:50 final size:50
Alignment explanation
Indices: 32873630--32873871 Score: 229
Period size: 50 Copynumber: 4.8 Consensus size: 50
32873620 AGCCGAAGCT
* * * *
32873630 ATCTGATACGCATAGTAGCCTGCACTTAGTACTACACATGCGACC-AACA
1 ATCTGATACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACC
* * * * *
32873679 ATCCGGTACACGTAGTAGTCTGCACTTAGTACTACACACGTGACCTCACC
1 ATCTGATACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACC
* * * *
32873729 ATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTC
1 ATCTGATACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAA-CC
* * * * * *
32873780 AT-TGAGTACGCATAGTAGCCTGCACGTAGTACTACACATGCGACTTAA-T
1 ATCTGA-TACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACC
* * * *
32873829 AGTATGGTATACATAGTAGCCTGCACTTAATACTACACACGTG
1 A-TCTGATACACATAGTAGCCTGCACTTAGTACTACACACGTG
32873872 TATTCACAAT
Statistics
Matches: 156, Mismatches: 32, Indels: 9
0.79 0.16 0.05
Matches are distributed among these distances:
49 39 0.25
50 78 0.50
51 39 0.25
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (50 bp):
ATCTGATACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACC
Found at i:32876650 original size:51 final size:50
Alignment explanation
Indices: 32876569--32876744 Score: 177
Period size: 51 Copynumber: 3.6 Consensus size: 50
32876559 AGATATGTGG
** *
32876569 CATCCGAGCTTGTTGAGGGGTCCGAGTTCATAATGGATGCGATTCATGTAA
1 CATCCGAGCTCATTGAGAGGTCCGAGTTCATAATGGATG-GATTCATGTAA
* * *
32876620 CATCTGAGCTCATTGAGAGGTCCGAGTTCATTATGGATGG------G-AG
1 CATCCGAGCTCATTGAGAGGTCCGAGTTCATAATGGATGGATTCATGTAA
* * * *
32876663 CATCCAAGCTCGTTGAGAGGTCCGAATTCATAATGGATGAAATTCATGTAA
1 CATCCGAGCTCATTGAGAGGTCCGAGTTCATAATGGATG-GATTCATGTAA
* *
32876714 CATCCGAGCTCATTGAGAGGACCAAGTTCAT
1 CATCCGAGCTCATTGAGAGGTCCGAGTTCAT
32876745 TATAGATGTG
Statistics
Matches: 99, Mismatches: 18, Indels: 16
0.74 0.14 0.12
Matches are distributed among these distances:
43 35 0.35
44 1 0.01
50 2 0.02
51 61 0.62
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (50 bp):
CATCCGAGCTCATTGAGAGGTCCGAGTTCATAATGGATGGATTCATGTAA
Found at i:32876699 original size:94 final size:94
Alignment explanation
Indices: 32876568--32876752 Score: 280
Period size: 94 Copynumber: 2.0 Consensus size: 94
32876558 GAGATATGTG
* * * * ** *
32876568 GCATCCGAGCTTGTTGAGGGGTCCGAGTTCATAATGGATGCGATTCATGTAACATCTGAGCTCAT
1 GCATCCAAGCTCGTTGAGAGGTCCGAATTCATAATGGATGAAATTCATGTAACATCCGAGCTCAT
* * *
32876633 TGAGAGGTCCGAGTTCATTATGGATGGGA
66 TGAGAGGACCAAGTTCATTATAGATGGGA
32876662 GCATCCAAGCTCGTTGAGAGGTCCGAATTCATAATGGATGAAATTCATGTAACATCCGAGCTCAT
1 GCATCCAAGCTCGTTGAGAGGTCCGAATTCATAATGGATGAAATTCATGTAACATCCGAGCTCAT
32876727 TGAGAGGACCAAGTTCATTATAGATG
66 TGAGAGGACCAAGTTCATTATAGATG
32876753 TGTTACATGT
Statistics
Matches: 81, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
94 81 1.00
ACGTcount: A:0.28, C:0.18, G:0.27, T:0.28
Consensus pattern (94 bp):
GCATCCAAGCTCGTTGAGAGGTCCGAATTCATAATGGATGAAATTCATGTAACATCCGAGCTCAT
TGAGAGGACCAAGTTCATTATAGATGGGA
Found at i:32883826 original size:25 final size:25
Alignment explanation
Indices: 32883797--32883844 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
32883787 TTATAATATG
* * *
32883797 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
32883822 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
32883845 GTTTATATAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:32883895 original size:9 final size:9
Alignment explanation
Indices: 32883883--32883939 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
32883873 TTTGATAAAC
32883883 ATGATATGT
1 ATGATATGT
*
32883892 ATGATATGCAC
1 ATGATATG--T
*
32883903 ATGACATGT
1 ATGATATGT
*
32883912 ATGATATGCAC
1 ATGATATG--T
32883923 ATGATATGT
1 ATGATATGT
32883932 ATGATATG
1 ATGATATG
32883940 CACACGAGAT
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:32883906 original size:20 final size:20
Alignment explanation
Indices: 32883881--32883943 Score: 117
Period size: 20 Copynumber: 3.1 Consensus size: 20
32883871 ATTTTGATAA
32883881 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
32883901 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
32883921 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
32883941 ACA
1 ACA
32883944 CGAGATGTTC
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.37, C:0.13, G:0.19, T:0.32
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:32884024 original size:24 final size:24
Alignment explanation
Indices: 32883997--32884139 Score: 229
Period size: 24 Copynumber: 6.0 Consensus size: 24
32883987 GAGGAAGTGC
32883997 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
32884021 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
32884045 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
32884069 -AAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
32884092 AAAAAGGGCTT-TGCCCCAGTTATT
1 -AAAAGGGCTTATGCCCCAGTTATT
*
32884116 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
32884140 ATGATAAAGC
Statistics
Matches: 113, Mismatches: 1, Indels: 9
0.92 0.01 0.07
Matches are distributed among these distances:
23 29 0.26
24 67 0.59
25 17 0.15
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.28
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:32884091 original size:47 final size:48
Alignment explanation
Indices: 32883997--32884118 Score: 221
Period size: 47 Copynumber: 2.6 Consensus size: 48
32883987 GAGGAAGTGC
32883997 AAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTATT-
1 AAAAGGGCTTATGCCCCAGTTATT-AAAGGGCTTATGCCCCAGTTATTA
32884045 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATTA
1 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATTA
32884093 AAAAGGGCTT-TGCCCCAGTTATTAAA
1 AAAAGGGCTTATGCCCCAGTTATTAAA
32884119 AGAGGCTAGG
Statistics
Matches: 73, Mismatches: 0, Indels: 3
0.96 0.00 0.04
Matches are distributed among these distances:
47 39 0.53
48 34 0.47
ACGTcount: A:0.30, C:0.20, G:0.20, T:0.29
Consensus pattern (48 bp):
AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATTA
Found at i:32884114 original size:71 final size:72
Alignment explanation
Indices: 32883998--32884139 Score: 236
Period size: 71 Copynumber: 2.0 Consensus size: 72
32883988 AGGAAGTGCA
*
32883998 AAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTATTAAAAG-GGCTTATGCC-C
1 AAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTATTAAAAGAGGC-TAGGCCTC
32884061 CAGTTATT
65 CAGTTATT
32884069 AAAGGGCTTATGCCCCAGTTATTAAAAAGGGCTT-TGCCCCAGTTATTAAAAGAGGCTAGGCCTC
1 AAAGGGCTTATGCCCCAGTTATT-AAAAGGGCTTATGCCCCAGTTATTAAAAGAGGCTAGGCCTC
32884133 CAGTTAT
65 CAGTTAT
32884140 ATGATAAAGC
Statistics
Matches: 67, Mismatches: 1, Indels: 5
0.92 0.01 0.07
Matches are distributed among these distances:
71 46 0.69
72 21 0.31
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.28
Consensus pattern (72 bp):
AAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTATTAAAAGAGGCTAGGCCTCC
AGTTATT
Found at i:32884361 original size:31 final size:31
Alignment explanation
Indices: 32884326--32884389 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
32884316 CGTTTACAGT
32884326 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
** *
32884357 AAAGGCTTCGGCCCAGTGTTATGAATTATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
32884388 AA
1 AA
32884390 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:32891887 original size:25 final size:25
Alignment explanation
Indices: 32891858--32891905 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
32891848 TTATAATATG
* * *
32891858 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
32891883 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
32891906 GTTTATATAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:32891956 original size:9 final size:9
Alignment explanation
Indices: 32891944--32892000 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
32891934 TTTGATAAAC
32891944 ATGATATGT
1 ATGATATGT
*
32891953 ATGATATGCAC
1 ATGATATG--T
*
32891964 ATGACATGT
1 ATGATATGT
*
32891973 ATGATATGCAC
1 ATGATATG--T
32891984 ATGATATGT
1 ATGATATGT
32891993 ATGATATG
1 ATGATATG
32892001 CACACGAGAT
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:32891967 original size:20 final size:20
Alignment explanation
Indices: 32891942--32892004 Score: 117
Period size: 20 Copynumber: 3.1 Consensus size: 20
32891932 ATTTTGATAA
32891942 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
32891962 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
32891982 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
32892002 ACA
1 ACA
32892005 CGAGATGTTC
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.37, C:0.13, G:0.19, T:0.32
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:32892137 original size:23 final size:24
Alignment explanation
Indices: 32892058--32892201 Score: 222
Period size: 24 Copynumber: 6.0 Consensus size: 24
32892048 GAGGAAGTGC
32892058 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
32892082 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
32892106 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
32892130 -AAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
32892153 AAAAAAGGGCTT-TGCCCCAGTTATT
1 --AAAAGGGCTTATGCCCCAGTTATT
*
32892178 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
32892202 ATGATAAAGC
Statistics
Matches: 113, Mismatches: 1, Indels: 11
0.90 0.01 0.09
Matches are distributed among these distances:
23 29 0.26
24 54 0.48
25 21 0.19
26 9 0.08
ACGTcount: A:0.30, C:0.21, G:0.22, T:0.28
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:32892429 original size:31 final size:31
Alignment explanation
Indices: 32892394--32892457 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
32892384 CGTTTACAGT
32892394 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
** *
32892425 AAAGGCTTCGGCCCAGTGTTATGAATTATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
32892456 AA
1 AA
32892458 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:32900780 original size:29 final size:30
Alignment explanation
Indices: 32900736--32900795 Score: 77
Period size: 29 Copynumber: 2.0 Consensus size: 30
32900726 TTCCCGAACC
32900736 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
1 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
* * * *
32900766 TAGGGG-AAAATTGTAATTTTGCCAAAGTT
1 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
32900795 T
1 T
32900796 GAGTTAAGGA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
29 20 0.77
30 6 0.23
ACGTcount: A:0.38, C:0.07, G:0.25, T:0.30
Consensus pattern (30 bp):
TAGGGGCAAAAGTGTAAATATGCAAAAGTT
Found at i:32901609 original size:64 final size:64
Alignment explanation
Indices: 32901461--32901711 Score: 206
Period size: 67 Copynumber: 3.8 Consensus size: 64
32901451 TACAGATAGT
* ** * * * *
32901461 ATGTAGCTAGGTCACATGTATGGTGCTA-GTGCACATCATGT-GTACAAGAGAGCTACAAGACAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAG-ACAAGAGAGCTAC--GAGA-
*
32901524 TATG
62 TA-A
* * *
32901528 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * *
32901592 ATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
32901657 AA
63 AA
* * *
32901659 AT-TGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT-GTACAAGAGAGC
1 ATGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAGC
32901712 CGAACTATAT
Statistics
Matches: 151, Mismatches: 26, Indels: 18
0.77 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.13
64 25 0.17
65 2 0.01
66 23 0.15
67 56 0.37
68 24 0.16
69 1 0.01
ACGTcount: A:0.29, C:0.17, G:0.29, T:0.24
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:32907176 original size:51 final size:51
Alignment explanation
Indices: 32907100--32907203 Score: 181
Period size: 51 Copynumber: 2.0 Consensus size: 51
32907090 GACGCACGGC
*
32907100 CGTACCACACGCCCATGGGGTTGACCATGTGTCACACACGGCCTAGACACA
1 CGTACCACACGCCCATGGGGTTGACCATGTGTCACACACGGCCAAGACACA
* *
32907151 CGTACCACACGCCTATGGGGTTGACCATGTGTTACACACGGCCAAGACACA
1 CGTACCACACGCCCATGGGGTTGACCATGTGTCACACACGGCCAAGACACA
32907202 CG
1 CG
32907204 CCCGTGTGTC
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
51 50 1.00
ACGTcount: A:0.26, C:0.34, G:0.24, T:0.16
Consensus pattern (51 bp):
CGTACCACACGCCCATGGGGTTGACCATGTGTCACACACGGCCAAGACACA
Found at i:32911676 original size:29 final size:27
Alignment explanation
Indices: 32911642--32911744 Score: 98
Period size: 29 Copynumber: 3.6 Consensus size: 27
32911632 TACTCAATCA
*
32911642 CGCACACTTAGTGCCATGTGATTCAAGCC
1 CGCACACTTAGTGCCAT-T-ATTCAAGCT
* * *
32911671 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCAT-TA-TTCAAGCT
*
32911700 CGCACACTTAGTGCCATACATTACAAGCT
1 CGCACACTTAGTGCCAT-TATT-CAAGCT
*
32911729 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
32911745 ATCTCGTCCC
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 2 0.03
29 60 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (27 bp):
CGCACACTTAGTGCCATTATTCAAGCT
Found at i:32919703 original size:29 final size:27
Alignment explanation
Indices: 32919669--32919771 Score: 98
Period size: 29 Copynumber: 3.6 Consensus size: 27
32919659 TACTCAATCA
*
32919669 CGCACACTTAGTGCCATGTGATTCAAGCC
1 CGCACACTTAGTGCCAT-T-ATTCAAGCT
* * *
32919698 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCAT-TA-TTCAAGCT
*
32919727 CGCACACTTAGTGCCATACATTACAAGCT
1 CGCACACTTAGTGCCAT-TATT-CAAGCT
*
32919756 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
32919772 ATCTCGTCCC
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 2 0.03
29 60 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (27 bp):
CGCACACTTAGTGCCATTATTCAAGCT
Found at i:32924605 original size:40 final size:40
Alignment explanation
Indices: 32924524--32924712 Score: 158
Period size: 39 Copynumber: 4.8 Consensus size: 40
32924514 GGATATAACG
* *
32924524 ACTCGCTCAAATGCCTTC-GGAC-AAAGCCC-GGTTATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAA-CCCGGGTT-TAGTA
*
32924563 ACTCGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAACCCGGGTTTAGTA
* * *
32924603 ACTCGCACAAATGCCTTCGGG-CTTAGCCCGGATTTATTA
1 ACTCGCACAAATGCCTTCGGGACTTAACCCGGGTTTAGTA
* * ** * * *
32924642 ACTCGCACGAACGCCTTC-GGATCTTAGTCC-GATATAGTC
1 ACTCGCACAAATGCCTTCGGGA-CTTAACCCGGGTTTAGTA
* *
32924681 ACTTAGCACAAA-GCCTTCGGGACTTAGCCCGG
1 AC-TCGCACAAATGCCTTCGGGACTTAACCCGG
32924713 ACATCATTCA
Statistics
Matches: 126, Mismatches: 16, Indels: 15
0.80 0.10 0.10
Matches are distributed among these distances:
38 2 0.02
39 68 0.54
40 50 0.40
41 6 0.05
ACGTcount: A:0.24, C:0.29, G:0.22, T:0.24
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAACCCGGGTTTAGTA
Found at i:32924631 original size:79 final size:78
Alignment explanation
Indices: 32924524--32924713 Score: 206
Period size: 79 Copynumber: 2.4 Consensus size: 78
32924514 GGATATAACG
* * ** *
32924524 ACTCGCTCAAATGCCTTCGGACAAAGCCCGG-TTATAGTAACTCGCACGAATGCCTTCGGGA-CT
1 ACTCGCACAAATGCCTTCGGGCTTAGCCCGGATT-TAGTAACTCGCACGAACGCCTTC-GGATCT
* *
32924587 TAACCCGGGTTTAGTA
64 TAACCC-GATATAGTA
*
32924603 ACTCGCACAAATGCCTTCGGGCTTAGCCCGGATTTATTAACTCGCACGAACGCCTTCGGATCTTA
1 ACTCGCACAAATGCCTTCGGGCTTAGCCCGGATTTAGTAACTCGCACGAACGCCTTCGGATCTTA
** *
32924668 GTCCGATATAGTC
66 ACCCGATATAGTA
*
32924681 ACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
1 AC-TCGCACAAATGCCTTCGGG-CTTAGCCCGGA
32924714 CATCATTCAA
Statistics
Matches: 95, Mismatches: 12, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
78 20 0.21
79 73 0.77
80 2 0.02
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.24
Consensus pattern (78 bp):
ACTCGCACAAATGCCTTCGGGCTTAGCCCGGATTTAGTAACTCGCACGAACGCCTTCGGATCTTA
ACCCGATATAGTA
Found at i:32932621 original size:79 final size:80
Alignment explanation
Indices: 32932485--32932702 Score: 232
Period size: 79 Copynumber: 2.8 Consensus size: 80
32932475 GAATCACGTA
*** * **
32932485 CCTTCGGAAT-TTAA-CCGGATATAACGACTCGCTCAAATGCCTTCGGGACAAAGCCCGG-TTAT
1 CCTTCGG-ATCTTAACCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATT-T
*
32932547 AGTAACTCGCACGAATG
64 AGTAACTCGCACGAACG
* *
32932564 CCTTCGGGA-CTTAACCCGGGTTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGCCCGGATTTA
1 CCTTC-GGATCTTAACCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTA
*
32932627 TTAACTCGCACGAACG
65 GTAACTCGCACGAACG
** * *
32932643 CCTTCGGATCTTAGTCCGGATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
1 CCTTCGGATCTTAACCCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGCCCGGA
32932703 CATCATTCAA
Statistics
Matches: 116, Mismatches: 16, Indels: 13
0.80 0.11 0.09
Matches are distributed among these distances:
78 3 0.03
79 63 0.54
80 50 0.43
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.24
Consensus pattern (80 bp):
CCTTCGGATCTTAACCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAG
TAACTCGCACGAACG
Found at i:32932702 original size:40 final size:39
Alignment explanation
Indices: 32932511--32932702 Score: 190
Period size: 40 Copynumber: 4.8 Consensus size: 39
32932501 GGATATAACG
* ** *
32932511 ACTCGCTCAAATGCCTTCGGGACAAAGCCCGGTTATAGTA
1 ACTCGCACAAA-GCCTTCGGGACTTAGCCCGGATATAGTA
* * * *
32932551 ACTCGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTA
1 ACTCGCAC-AAAGCCTTCGGGACTTAGCCCGGATATAGTA
* *
32932591 ACTCGCACAAATGCCTTCGGG-CTTAGCCCGGATTTATTA
1 ACTCGCACAAA-GCCTTCGGGACTTAGCCCGGATATAGTA
* * *
32932630 ACTCGCACGAACGCCTTC-GGATCTTAGTCCGGATATAGTC
1 ACTCGCAC-AAAGCCTTCGGGA-CTTAGCCCGGATATAGTA
*
32932670 ACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 AC-TCGCACAAAGCCTTCGGGACTTAGCCCGGA
32932703 CATCATTCAA
Statistics
Matches: 126, Mismatches: 19, Indels: 14
0.79 0.12 0.09
Matches are distributed among these distances:
38 2 0.02
39 31 0.25
40 83 0.66
41 10 0.08
ACGTcount: A:0.24, C:0.29, G:0.23, T:0.24
Consensus pattern (39 bp):
ACTCGCACAAAGCCTTCGGGACTTAGCCCGGATATAGTA
Found at i:32934759 original size:56 final size:58
Alignment explanation
Indices: 32934690--32934818 Score: 165
Period size: 56 Copynumber: 2.3 Consensus size: 58
32934680 ATTTAAGCCC
* * *
32934690 GCACACATAGTGCCATACCCTTCGAGC-TCGCACACCCAGTG-C-TATATTTCCAGCAT
1 GCACACTTAGTGCCATACACTTCCAGCAT-GCACACCCAGTGCCATATATTTCCAGCAT
* * **
32934746 GCACACTTAGTGCCATATATTTCCAGCATGCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATACACTTCCAGCATGCACACCCAGTGCCATATATTTCCAGCAT
32934804 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
32934819 ATCTCGTCAC
Statistics
Matches: 63, Mismatches: 7, Indels: 4
0.85 0.09 0.05
Matches are distributed among these distances:
56 32 0.51
57 2 0.03
58 29 0.46
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (58 bp):
GCACACTTAGTGCCATACACTTCCAGCATGCACACCCAGTGCCATATATTTCCAGCAT
Found at i:32934774 original size:29 final size:29
Alignment explanation
Indices: 32934732--32934818 Score: 174
Period size: 29 Copynumber: 3.0 Consensus size: 29
32934722 CACCCAGTGC
32934732 TATATTTCCAGCATGCACACTTAGTGCCA
1 TATATTTCCAGCATGCACACTTAGTGCCA
32934761 TATATTTCCAGCATGCACACTTAGTGCCA
1 TATATTTCCAGCATGCACACTTAGTGCCA
32934790 TATATTTCCAGCATGCACACTTAGTGCCA
1 TATATTTCCAGCATGCACACTTAGTGCCA
32934819 ATCTCGTCAC
Statistics
Matches: 58, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 58 1.00
ACGTcount: A:0.28, C:0.28, G:0.14, T:0.31
Consensus pattern (29 bp):
TATATTTCCAGCATGCACACTTAGTGCCA
Found at i:32943249 original size:27 final size:28
Alignment explanation
Indices: 32943193--32943261 Score: 115
Period size: 28 Copynumber: 2.5 Consensus size: 28
32943183 AAAATTGTAC
32943193 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
32943221 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
32943248 AGCACT-AGTGTGCG
1 AGCACTAAGTGTGCG
32943262 GACTCACTAT
Statistics
Matches: 40, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
26 8 0.20
27 15 0.38
28 17 0.43
ACGTcount: A:0.28, C:0.14, G:0.28, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:32943272 original size:26 final size:27
Alignment explanation
Indices: 32943193--32943273 Score: 69
Period size: 28 Copynumber: 3.0 Consensus size: 27
32943183 AAAATTGTAC
* *
32943193 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
32943221 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
32943248 AGCACT-AGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
32943274 GCTTTTGAAT
Statistics
Matches: 48, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
25 1 0.02
26 15 0.31
27 14 0.29
28 18 0.38
ACGTcount: A:0.28, C:0.16, G:0.25, T:0.31
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:32951163 original size:27 final size:28
Alignment explanation
Indices: 32951107--32951175 Score: 115
Period size: 28 Copynumber: 2.5 Consensus size: 28
32951097 AAAATTGTAC
32951107 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
32951135 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
32951162 AGCACT-AGTGTGCG
1 AGCACTAAGTGTGCG
32951176 GACTCACTAT
Statistics
Matches: 40, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
26 8 0.20
27 15 0.38
28 17 0.43
ACGTcount: A:0.28, C:0.14, G:0.28, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:32951186 original size:26 final size:27
Alignment explanation
Indices: 32951107--32951187 Score: 69
Period size: 28 Copynumber: 3.0 Consensus size: 27
32951097 AAAATTGTAC
* *
32951107 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
32951135 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
32951162 AGCACT-AGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
32951188 GCTTTTGAAT
Statistics
Matches: 48, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
25 1 0.02
26 15 0.31
27 14 0.29
28 18 0.38
ACGTcount: A:0.28, C:0.16, G:0.25, T:0.31
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:32965609 original size:21 final size:20
Alignment explanation
Indices: 32965571--32965615 Score: 54
Period size: 21 Copynumber: 2.2 Consensus size: 20
32965561 TTTTCCTAAG
32965571 ATGTGAATTGAATGAAATTGA
1 ATGTGAATTGAATGAAATT-A
** *
32965592 ATGTGAATTTTATTAAATTA
1 ATGTGAATTGAATGAAATTA
32965612 ATGT
1 ATGT
32965616 TAACTTCATT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
20 5 0.24
21 16 0.76
ACGTcount: A:0.40, C:0.00, G:0.18, T:0.42
Consensus pattern (20 bp):
ATGTGAATTGAATGAAATTA
Found at i:32968283 original size:38 final size:35
Alignment explanation
Indices: 32968224--32968341 Score: 126
Period size: 31 Copynumber: 3.5 Consensus size: 35
32968214 TCAATCATGC
*
32968224 ACTGGGCCGTAGCCCTTTTCATATTTCATATTTCATAAT
1 ACTGGGCCGAAG-CCTTTTCATATTTCATATTT-AT--T
32968263 ACTGGGCCGAAGCCTTTTCATATTTC--A--TATT
1 ACTGGGCCGAAGCCTTTTCATATTTCATATTTATT
*
32968294 ACTGGGCCGAAGCCTTTTCAGATTTC--A--TATT
1 ACTGGGCCGAAGCCTTTTCATATTTCATATTTATT
32968325 ACTGGGCCGAAGCCTTT
1 ACTGGGCCGAAGCCTTT
32968342 ACTGTAAACG
Statistics
Matches: 77, Mismatches: 2, Indels: 8
0.89 0.02 0.09
Matches are distributed among these distances:
31 48 0.62
33 2 0.03
34 1 0.01
36 1 0.01
38 14 0.18
39 11 0.14
ACGTcount: A:0.22, C:0.24, G:0.18, T:0.36
Consensus pattern (35 bp):
ACTGGGCCGAAGCCTTTTCATATTTCATATTTATT
Found at i:32968285 original size:31 final size:31
Alignment explanation
Indices: 32968247--32968341 Score: 172
Period size: 31 Copynumber: 3.1 Consensus size: 31
32968237 CCTTTTCATA
*
32968247 TTTCATATTTCATAATACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
32968278 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
*
32968309 TTTCAGATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
32968340 TT
1 TT
32968342 ACTGTAAACG
Statistics
Matches: 62, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 62 1.00
ACGTcount: A:0.23, C:0.22, G:0.17, T:0.38
Consensus pattern (31 bp):
TTTCATATTTCATATTACTGGGCCGAAGCCT
Found at i:32968584 original size:24 final size:24
Alignment explanation
Indices: 32968533--32968675 Score: 209
Period size: 24 Copynumber: 6.0 Consensus size: 24
32968523 GCTTTATCAT
*
32968533 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
32968558 ATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTA
32968582 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
*
32968605 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
32968629 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
32968653 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
32968676 TCACTTCCTC
Statistics
Matches: 111, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
23 23 0.21
24 76 0.68
25 12 0.11
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:32968612 original size:47 final size:48
Alignment explanation
Indices: 32968533--32968674 Score: 207
Period size: 47 Copynumber: 3.0 Consensus size: 48
32968523 GCTTTATCAT
* *
32968533 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTCA
**
32968582 ATAACTGGGGCATAAGCCCTTTT-ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
*
32968629 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTT
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTT
32968675 TTCACTTCCT
Statistics
Matches: 87, Mismatches: 4, Indels: 5
0.91 0.04 0.05
Matches are distributed among these distances:
47 44 0.51
48 31 0.36
49 12 0.14
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.28
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
Found at i:32968633 original size:71 final size:72
Alignment explanation
Indices: 32968532--32968675 Score: 220
Period size: 71 Copynumber: 2.0 Consensus size: 72
32968522 TGCTTTATCA
*
32968532 TATAACTGGAGGCCTAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
1 TATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
32968597 GCCCTTT
66 GCCCTTT
* * **
32968604 TATAACTGG-GGCATAAGCC-CTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATA
1 TATAACTGGAGGCAT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATA
32968667 AGCCCTTT
65 AGCCCTTT
32968675 T
1 T
32968676 TCACTTCCTC
Statistics
Matches: 66, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
71 53 0.80
72 13 0.20
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.29
Consensus pattern (72 bp):
TATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
GCCCTTT
Found at i:32968751 original size:20 final size:20
Alignment explanation
Indices: 32968726--32968785 Score: 102
Period size: 20 Copynumber: 3.0 Consensus size: 20
32968716 TATGATTACC
32968726 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
* *
32968746 TCATGTGCATAGCATACATT
1 TCATGTGCATATCATACATA
32968766 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
32968786 CCATATTTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.33, C:0.20, G:0.12, T:0.35
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:32968873 original size:24 final size:25
Alignment explanation
Indices: 32968828--32968874 Score: 69
Period size: 24 Copynumber: 1.9 Consensus size: 25
32968818 ATACATAAAC
* *
32968828 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCATAACGGTCATTTTTA
32968853 CCTAGGGGCA-AACGGTCATTTT
1 CCTAGGGGCATAACGGTCATTTT
32968875 CATATTATAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 11 0.55
25 9 0.45
ACGTcount: A:0.23, C:0.17, G:0.26, T:0.34
Consensus pattern (25 bp):
CCTAGGGGCATAACGGTCATTTTTA
Found at i:32970090 original size:27 final size:27
Alignment explanation
Indices: 32970028--32970092 Score: 87
Period size: 27 Copynumber: 2.4 Consensus size: 27
32970018 GGGCATATTC
32970028 GTCATTTTACCATACAGGGGTATTACG
1 GTCATTTTACCATACAGGGGTATTACG
* *
32970055 GTCACTTTACCCTACAGGGGCT-TTACG
1 GTCATTTTACCATACAGGGG-TATTACG
*
32970082 GTCTTTTTACC
1 GTCATTTTACC
32970093 TTTTAGGGGT
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
27 32 0.97
28 1 0.03
ACGTcount: A:0.20, C:0.25, G:0.20, T:0.35
Consensus pattern (27 bp):
GTCATTTTACCATACAGGGGTATTACG
Found at i:32970176 original size:27 final size:27
Alignment explanation
Indices: 32970154--32970373 Score: 140
Period size: 27 Copynumber: 8.1 Consensus size: 27
32970144 ACAAACCAAA
* *
32970154 GGTATTTCAGTAATTTTGTAAACCAAT
1 GGTATTTCAGTAATTTTGTAAATCAAG
32970181 GGTA-TTCTA-TAATTTT-TAAAAGTCAAG
1 GGTATTTC-AGTAATTTTGT-AAA-TCAAG
* * *
32970208 GGTATTTCTGTAACTTTGTAAATCAGG
1 GGTATTTCAGTAATTTTGTAAATCAAG
** ** **
32970235 GGTATTTTGGTAATTTTACAAATTGAG
1 GGTATTTCAGTAATTTTGTAAATCAAG
*
32970262 GGTATTTCAGTAATTTTGTAAATCGAG
1 GGTATTTCAGTAATTTTGTAAATCAAG
*** *
32970289 GGTAAAACAGTAATTCTGTAAATCAAG
1 GGTATTTCAGTAATTTTGTAAATCAAG
*** * * *
32970316 GGTAAAACAGTAATTCTATAAATCGAG
1 GGTATTTCAGTAATTTTGTAAATCAAG
*** * * *
32970343 GGTAAAACGGTAATTCTGTAAATCGAG
1 GGTATTTCAGTAATTTTGTAAATCAAG
32970370 GGTA
1 GGTA
32970374 AAACGATAAT
Statistics
Matches: 160, Mismatches: 27, Indels: 12
0.80 0.14 0.06
Matches are distributed among these distances:
25 1 0.01
26 13 0.08
27 133 0.83
28 12 0.08
29 1 0.01
ACGTcount: A:0.35, C:0.09, G:0.20, T:0.35
Consensus pattern (27 bp):
GGTATTTCAGTAATTTTGTAAATCAAG
Found at i:32970374 original size:27 final size:27
Alignment explanation
Indices: 32970271--32971021 Score: 872
Period size: 27 Copynumber: 27.8 Consensus size: 27
32970261 GGGTATTTCA
* * *
32970271 GTAATTTTGTAAATCGAGGGTAAAACA
1 GTAATTCTATAAATCGAGGGTAAAACG
* * *
32970298 GTAATTCTGTAAATCAAGGGTAAAACA
1 GTAATTCTATAAATCGAGGGTAAAACG
32970325 GTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
*
32970352 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
* *
32970379 ATAATTCTATAAGTCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
* * *
32970406 ATAATTATGTAAATC-AGGGGTAAAACG
1 GTAATTCTATAAATCGA-GGGTAAAACG
* * *
32970433 GTAATTATGTAAAT-TAGGGGTAAAACG
1 GTAATTCTATAAATCGA-GGGTAAAACG
* **
32970460 ATAATTCTATAAATCGAGGGTAAAATA
1 GTAATTCTATAAATCGAGGGTAAAACG
* *
32970487 GTAATTCTGTAAA-CTGAGGGTAAAATG
1 GTAATTCTATAAATC-GAGGGTAAAACG
32970514 GTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
* *
32970541 GTAATTTTACAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
*
32970568 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
* *
32970595 ATAATTCTATAAGTCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
* * * *
32970622 ATAATTATGTAAAT-TAGGGGTAAAACG
1 GTAATTCTATAAATCGA-GGGTAAAACG
* * *
32970649 GTAATTATGTAAAT-TAGGGGTAAAACG
1 GTAATTCTATAAATCGA-GGGTAAAACG
* **
32970676 ATAATTCTATAAATCGAGGGTAAAATA
1 GTAATTCTATAAATCGAGGGTAAAACG
* *
32970703 GTAATTCTGTAAA-CTGAGGGTAAAATG
1 GTAATTCTATAAATC-GAGGGTAAAACG
32970730 GTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
32970757 GTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
* *
32970784 GTAATTCTGTAAATCAAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
* *
32970811 ATAATTCTATAAGTCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
* * *
32970838 ATAATTATGTAAATC-AGGGGTAAAACG
1 GTAATTCTATAAATCGA-GGGTAAAACG
* * *
32970865 GTAATTATGTAAAT-TAGGGGTAAAACG
1 GTAATTCTATAAATCGA-GGGTAAAACG
* **
32970892 ATAATTCTATAAATCGAGGGTAAAATA
1 GTAATTCTATAAATCGAGGGTAAAACG
* *
32970919 GTAATTCTGTAAA-CTGAGGGTAAAATG
1 GTAATTCTATAAATC-GAGGGTAAAACG
32970946 GTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
* *
32970973 GTAATTTTACAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
32971000 GTAATTCTATAAATCGAGGGTA
1 GTAATTCTATAAATCGAGGGTA
32971022 CTTTGGTAAT
Statistics
Matches: 637, Mismatches: 73, Indels: 28
0.86 0.10 0.04
Matches are distributed among these distances:
26 6 0.01
27 625 0.98
28 6 0.01
ACGTcount: A:0.41, C:0.09, G:0.22, T:0.28
Consensus pattern (27 bp):
GTAATTCTATAAATCGAGGGTAAAACG
Found at i:32971058 original size:27 final size:27
Alignment explanation
Indices: 32971028--32971092 Score: 103
Period size: 27 Copynumber: 2.4 Consensus size: 27
32971018 GGTACTTTGG
32971028 TAATTTTACAAGTCGAGGGTATTTCAA
1 TAATTTTACAAGTCGAGGGTATTTCAA
* *
32971055 TAATTTTACAGGTCGAGGGTATTTCAG
1 TAATTTTACAAGTCGAGGGTATTTCAA
*
32971082 TAATTTCACAA
1 TAATTTTACAA
32971093 ATTAGGGGTA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.32, C:0.12, G:0.18, T:0.37
Consensus pattern (27 bp):
TAATTTTACAAGTCGAGGGTATTTCAA
Found at i:32971101 original size:27 final size:27
Alignment explanation
Indices: 32971071--32971249 Score: 245
Period size: 27 Copynumber: 6.7 Consensus size: 27
32971061 TACAGGTCGA
** * *
32971071 GGGTATTTCAGTAATTTCACAAATTAG
1 GGGTATTTTGGTAATTTTACAAACTAG
32971098 GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACTAG
* *
32971125 GGGTATTTTGATAATTTTACAAACTAA
1 GGGTATTTTGGTAATTTTACAAACTAG
32971152 GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACTAG
* * *
32971179 GGGTATTTTGGTAATTTTATAAACCAA
1 GGGTATTTTGGTAATTTTACAAACTAG
*
32971206 GGGTATTTTAGTAATTTTACAAAGC-A-
1 GGGTATTTTGGTAATTTTACAAA-CTAG
32971232 GGGTATTTTGGTAATTTT
1 GGGTATTTTGGTAATTTT
32971250 GTAAACCAAA
Statistics
Matches: 137, Mismatches: 14, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
26 17 0.12
27 119 0.87
28 1 0.01
ACGTcount: A:0.31, C:0.07, G:0.20, T:0.41
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACTAG
Found at i:32971102 original size:216 final size:216
Alignment explanation
Indices: 32970270--32971021 Score: 1371
Period size: 216 Copynumber: 3.5 Consensus size: 216
32970260 AGGGTATTTC
* ** * * *
32970270 AGTAATTTTGTAAA-TCGAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAACAGTAATTCTA
1 AGTAATTCTGTAAACT-GAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTA
*
32970334 TAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGATAATTCTATAAGTCGAGGG
65 CAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGATAATTCTATAAGTCGAGGG
32970399 TAAAACGATAATTATGTAAATCAGGGGTAAAACGGTAATTATGTAAATTAGGGGTAAAACGATAA
130 TAAAACGATAATTATGTAAATCAGGGGTAAAACGGTAATTATGTAAATTAGGGGTAAAACGATAA
32970464 TTCTATAAATCGAGGGTAAAAT
195 TTCTATAAATCGAGGGTAAAAT
*
32970486 AGTAATTCTGTAAACTGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGGTAATTTTAC
1 AGTAATTCTGTAAACTGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTAC
32970551 AAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGATAATTCTATAAGTCGAGGGT
66 AAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGATAATTCTATAAGTCGAGGGT
*
32970616 AAAACGATAATTATGTAAATTAGGGGTAAAACGGTAATTATGTAAATTAGGGGTAAAACGATAAT
131 AAAACGATAATTATGTAAATCAGGGGTAAAACGGTAATTATGTAAATTAGGGGTAAAACGATAAT
32970681 TCTATAAATCGAGGGTAAAAT
196 TCTATAAATCGAGGGTAAAAT
*
32970702 AGTAATTCTGTAAACTGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTAT
1 AGTAATTCTGTAAACTGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTAC
*
32970767 AAATCGAGGGTAAAACGGTAATTCTGTAAATCAAGGGTAAAACGATAATTCTATAAGTCGAGGGT
66 AAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGATAATTCTATAAGTCGAGGGT
32970832 AAAACGATAATTATGTAAATCAGGGGTAAAACGGTAATTATGTAAATTAGGGGTAAAACGATAAT
131 AAAACGATAATTATGTAAATCAGGGGTAAAACGGTAATTATGTAAATTAGGGGTAAAACGATAAT
32970897 TCTATAAATCGAGGGTAAAAT
196 TCTATAAATCGAGGGTAAAAT
*
32970918 AGTAATTCTGTAAACTGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGGTAATTTTAC
1 AGTAATTCTGTAAACTGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTAC
*
32970983 AAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTA
66 AAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTA
32971022 CTTTGGTAAT
Statistics
Matches: 518, Mismatches: 17, Indels: 2
0.96 0.03 0.00
Matches are distributed among these distances:
216 517 1.00
217 1 0.00
ACGTcount: A:0.41, C:0.09, G:0.22, T:0.28
Consensus pattern (216 bp):
AGTAATTCTGTAAACTGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTAC
AAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGATAATTCTATAAGTCGAGGGT
AAAACGATAATTATGTAAATCAGGGGTAAAACGGTAATTATGTAAATTAGGGGTAAAACGATAAT
TCTATAAATCGAGGGTAAAAT
Found at i:32971155 original size:81 final size:81
Alignment explanation
Indices: 32971017--32971228 Score: 241
Period size: 81 Copynumber: 2.6 Consensus size: 81
32971007 TATAAATCGA
* * * * ** *
32971017 GGGTACTTTGGTAATTTTAC-AAGTCGAGGGTATTTCAATAATTTTAC-AGGTCGAGGGTATTTC
1 GGGTATTTTGGTAATTTTACAAACTAG-GGGTATTT-TATAATTTTACAAACTCAAGGGTATTTC
*
32971080 AGTAATTTCACAAATTAG
64 AGTAATTTCACAAACTAG
**
32971098 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGATAATTTTACAAACT-AAGGGTATTTTG
1 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTT-ATAATTTTACAAACTCAAGGGTATTTCA
*
32971162 GTAATTTTACAAACTAG
65 GTAATTTCACAAACTAG
* * *
32971179 GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAA
1 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTA-TAATTTTACAAA
32971229 GCAGGGTATT
Statistics
Matches: 113, Mismatches: 14, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
80 1 0.01
81 106 0.94
82 6 0.05
ACGTcount: A:0.32, C:0.08, G:0.20, T:0.40
Consensus pattern (81 bp):
GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTATAATTTTACAAACTCAAGGGTATTTCAG
TAATTTCACAAACTAG
Found at i:32974007 original size:38 final size:35
Alignment explanation
Indices: 32973948--32974065 Score: 135
Period size: 31 Copynumber: 3.5 Consensus size: 35
32973938 TCAATCATGC
*
32973948 ACTGGGCCGTAGCCCTTTTCATATTTCATATTTCATAAT
1 ACTGGGCCGAAG-CCTTTTCATATTTCATATTT-AT--T
32973987 ACTGGGCCGAAGCCTTTTCATATTTC--A--TATT
1 ACTGGGCCGAAGCCTTTTCATATTTCATATTTATT
32974018 ACTGGGCCGAAGCCTTTTCATATTTC--A--TATT
1 ACTGGGCCGAAGCCTTTTCATATTTCATATTTATT
32974049 ACTGGGCCGAAGCCTTT
1 ACTGGGCCGAAGCCTTT
32974066 ACTGTAAACG
Statistics
Matches: 78, Mismatches: 1, Indels: 8
0.90 0.01 0.09
Matches are distributed among these distances:
31 49 0.63
33 2 0.03
34 1 0.01
36 1 0.01
38 14 0.18
39 11 0.14
ACGTcount: A:0.22, C:0.24, G:0.17, T:0.37
Consensus pattern (35 bp):
ACTGGGCCGAAGCCTTTTCATATTTCATATTTATT
Found at i:32974009 original size:31 final size:31
Alignment explanation
Indices: 32973971--32974065 Score: 181
Period size: 31 Copynumber: 3.1 Consensus size: 31
32973961 CCTTTTCATA
*
32973971 TTTCATATTTCATAATACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
32974002 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
32974033 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
32974064 TT
1 TT
32974066 ACTGTAAACG
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
31 63 1.00
ACGTcount: A:0.23, C:0.22, G:0.16, T:0.39
Consensus pattern (31 bp):
TTTCATATTTCATATTACTGGGCCGAAGCCT
Found at i:32974308 original size:24 final size:24
Alignment explanation
Indices: 32974257--32974399 Score: 209
Period size: 24 Copynumber: 6.0 Consensus size: 24
32974247 GCTTTATCAT
*
32974257 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
32974282 ATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTA
32974306 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
*
32974329 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
32974353 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
32974377 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
32974400 TCACTTCCTC
Statistics
Matches: 111, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
23 23 0.21
24 76 0.68
25 12 0.11
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:32974336 original size:47 final size:48
Alignment explanation
Indices: 32974257--32974398 Score: 207
Period size: 47 Copynumber: 3.0 Consensus size: 48
32974247 GCTTTATCAT
* *
32974257 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTCA
**
32974306 ATAACTGGGGCATAAGCCCTTTT-ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
*
32974353 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTT
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTT
32974399 TTCACTTCCT
Statistics
Matches: 87, Mismatches: 4, Indels: 5
0.91 0.04 0.05
Matches are distributed among these distances:
47 44 0.51
48 31 0.36
49 12 0.14
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.28
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
Found at i:32974357 original size:71 final size:72
Alignment explanation
Indices: 32974256--32974399 Score: 220
Period size: 71 Copynumber: 2.0 Consensus size: 72
32974246 TGCTTTATCA
*
32974256 TATAACTGGAGGCCTAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
1 TATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
32974321 GCCCTTT
66 GCCCTTT
* * **
32974328 TATAACTGG-GGCATAAGCC-CTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATA
1 TATAACTGGAGGCAT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATA
32974391 AGCCCTTT
65 AGCCCTTT
32974399 T
1 T
32974400 TCACTTCCTC
Statistics
Matches: 66, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
71 53 0.80
72 13 0.20
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.29
Consensus pattern (72 bp):
TATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
GCCCTTT
Found at i:32974475 original size:20 final size:20
Alignment explanation
Indices: 32974450--32974509 Score: 102
Period size: 20 Copynumber: 3.0 Consensus size: 20
32974440 TATGATTACC
32974450 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
* *
32974470 TCATGTGCATAGCATACATT
1 TCATGTGCATATCATACATA
32974490 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
32974510 CCATATTTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.33, C:0.20, G:0.12, T:0.35
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:32974584 original size:25 final size:25
Alignment explanation
Indices: 32974552--32974599 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
32974542 ATACATAAAC
* * *
32974552 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
32974577 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
32974600 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:32975819 original size:27 final size:27
Alignment explanation
Indices: 32975758--32975821 Score: 76
Period size: 27 Copynumber: 2.4 Consensus size: 27
32975748 GGCATATTCG
*
32975758 TCATTTTACCATACAGGGGTATTACGG
1 TCATTTTACCATACAGGGGTATTACGA
* *
32975785 TCACTTTACCCTACAGGGGCT-TTACGA
1 TCATTTTACCATACAGGGG-TATTACGA
*
32975812 TCTTTTTACC
1 TCATTTTACC
32975822 TTTTAGGGGT
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
27 30 0.97
28 1 0.03
ACGTcount: A:0.22, C:0.25, G:0.17, T:0.36
Consensus pattern (27 bp):
TCATTTTACCATACAGGGGTATTACGA
Found at i:32975905 original size:27 final size:26
Alignment explanation
Indices: 32975875--32975930 Score: 69
Period size: 27 Copynumber: 2.1 Consensus size: 26
32975865 GTAAGTCAAC
*
32975875 AAACCAAAGGTATTTC-AGTAATTTTGT
1 AAACCAAAGGTACTTCTA-TAATTTT-T
*
32975902 AAACCAATGGTACTTCTATAATTTTT
1 AAACCAAAGGTACTTCTATAATTTTT
32975928 AAA
1 AAA
32975931 AAGTCAAGGG
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
26 4 0.15
27 21 0.81
28 1 0.04
ACGTcount: A:0.39, C:0.12, G:0.11, T:0.38
Consensus pattern (26 bp):
AAACCAAAGGTACTTCTATAATTTTT
Found at i:32976014 original size:26 final size:27
Alignment explanation
Indices: 32975883--32976534 Score: 156
Period size: 27 Copynumber: 23.8 Consensus size: 27
32975873 ACAAACCAAA
* * * * *
32975883 GGTATTTCAGTAATTTTGTAAACCAAT
1 GGTATTTCGGTAATTTTATAAATCGAG
* ** * *
32975910 GGTACTTCTATAATTTTTAAAAAGTCAAG
1 GGTATTTCGGTAA-TTTTATAAA-TCGAG
* * * *
32975939 GGTGTTTCTGTAACTTTGTAAATC-AGG
1 GGTATTTCGGTAATTTTATAAATCGA-G
* *
32975966 GGTATTTTGGTAATTTTATAAATTGAG
1 GGTATTTCGGTAATTTTATAAATCGAG
*
32975993 GGTATTTCGGT-ATTTTGTAAATCGAG
1 GGTATTTCGGTAATTTTATAAATCGAG
*** * * * *
32976019 GGTAAAACAGTAATTCTGTAAATCAAG
1 GGTATTTCGGTAATTTTATAAATCGAG
*** * *
32976046 GGTAAAACAGTAATTCTATAAATCGAG
1 GGTATTTCGGTAATTTTATAAATCGAG
*** *
32976073 GGTAAAACGGTAATTCTATAAATCGAG
1 GGTATTTCGGTAATTTTATAAATCGAG
*** * * *
32976100 GGTAAAACGGTAATTCTGTAAGTCGAG
1 GGTATTTCGGTAATTTTATAAATCGAG
*** * * *
32976127 GGTAAAACGATAATTATGTAAATC-AGG
1 GGTATTTCGGTAATTTTATAAATCGA-G
*** * * * *
32976154 GGTAAAACGATAATTATGTAAAT-TAGG
1 GGTATTTCGGTAATTTTATAAATCGA-G
*** *
32976181 GGTAAAACGGTAATTCTATAAATCGAG
1 GGTATTTCGGTAATTTTATAAATCGAG
** * * *
32976208 GGTAAAAT-AGTAATTCTGTAAA-CTGAG
1 GGT-ATTTCGGTAATTTTATAAATC-GAG
***
32976235 GGTAAAACGGTAATTCTATAAATTCTATAAATCGAG
1 GGTATTTCGGTAATT-T-T--A---TA-A-ATCGAG
*** *
32976271 GGTAAAACGGTAATTTTACAAATCGAG
1 GGTATTTCGGTAATTTTATAAATCGAG
*** *
32976298 GGTAAAACGGTAATTCTATAAATCGAG
1 GGTATTTCGGTAATTTTATAAATCGAG
* *
32976325 GGTACTTT-GGTAATTTTACAAGTCGAG
1 GGTA-TTTCGGTAATTTTATAAATCGAG
** * **
32976352 GGTATTTCAATAATTTTACAGGTCGAG
1 GGTATTTCGGTAATTTTATAAATCGAG
* * * *
32976379 GGTATTTCAGTAATTTCACAAAT-TAGG
1 GGTATTTCGGTAATTTTATAAATCGA-G
* * *
32976406 GGTATTTTGGTAATTTTACAAA-CTAGG
1 GGTATTTCGGTAATTTTATAAATCGA-G
* * * *
32976433 GGTATTTTGATAATTTTACAAA-CTAGG
1 GGTATTTCGGTAATTTTATAAATCGA-G
* * *
32976460 GGTATTTTGGTAATTTTATAAACCAAG
1 GGTATTTCGGTAATTTTATAAATCGAG
** * *
32976487 GGTATTTTAGTAATTTTACAAAGC-AG
1 GGTATTTCGGTAATTTTATAAATCGAG
* *
32976513 GGTATTTTGGTAATTTTGTAAA
1 GGTATTTCGGTAATTTTATAAA
32976535 CCAAAGTATT
Statistics
Matches: 522, Mismatches: 77, Indels: 53
0.80 0.12 0.08
Matches are distributed among these distances:
26 51 0.10
27 409 0.78
28 21 0.04
29 15 0.03
32 1 0.00
34 3 0.01
35 2 0.00
36 19 0.04
37 1 0.00
ACGTcount: A:0.36, C:0.09, G:0.21, T:0.34
Consensus pattern (27 bp):
GGTATTTCGGTAATTTTATAAATCGAG
Found at i:32976041 original size:27 final size:27
Alignment explanation
Indices: 32975974--32976328 Score: 349
Period size: 27 Copynumber: 12.9 Consensus size: 27
32975964 GGGGTATTTT
* * ***
32975974 GGTAATTTTATAAATTGAGGGTATTTC
1 GGTAATTCTATAAATCGAGGGTAAAAC
* *
32976001 GGT-ATTTTGTAAATCGAGGGTAAAAC
1 GGTAATTCTATAAATCGAGGGTAAAAC
* * *
32976027 AGTAATTCTGTAAATCAAGGGTAAAAC
1 GGTAATTCTATAAATCGAGGGTAAAAC
*
32976054 AGTAATTCTATAAATCGAGGGTAAAAC
1 GGTAATTCTATAAATCGAGGGTAAAAC
32976081 GGTAATTCTATAAATCGAGGGTAAAAC
1 GGTAATTCTATAAATCGAGGGTAAAAC
* *
32976108 GGTAATTCTGTAAGTCGAGGGTAAAAC
1 GGTAATTCTATAAATCGAGGGTAAAAC
* * *
32976135 GATAATTATGTAAATC-AGGGGTAAAAC
1 GGTAATTCTATAAATCGA-GGGTAAAAC
* * * *
32976162 GATAATTATGTAAAT-TAGGGGTAAAAC
1 GGTAATTCTATAAATCGA-GGGTAAAAC
*
32976189 GGTAATTCTATAAATCGAGGGTAAAAT
1 GGTAATTCTATAAATCGAGGGTAAAAC
* *
32976216 AGTAATTCTGTAAA-CTGAGGGTAAAAC
1 GGTAATTCTATAAATC-GAGGGTAAAAC
32976243 GGTAATTCTATAAATTCTATAAATCGAGGGTAAAAC
1 GG--------T-AATTCTATAAATCGAGGGTAAAAC
* *
32976279 GGTAATTTTACAAATCGAGGGTAAAAC
1 GGTAATTCTATAAATCGAGGGTAAAAC
32976306 GGTAATTCTATAAATCGAGGGTA
1 GGTAATTCTATAAATCGAGGGTA
32976329 CTTTGGTAAT
Statistics
Matches: 283, Mismatches: 30, Indels: 30
0.83 0.09 0.09
Matches are distributed among these distances:
26 22 0.08
27 234 0.83
28 2 0.01
35 1 0.00
36 23 0.08
37 1 0.00
ACGTcount: A:0.40, C:0.09, G:0.22, T:0.29
Consensus pattern (27 bp):
GGTAATTCTATAAATCGAGGGTAAAAC
Found at i:32976264 original size:63 final size:63
Alignment explanation
Indices: 32976192--32976320 Score: 199
Period size: 63 Copynumber: 2.0 Consensus size: 63
32976182 GTAAAACGGT
* *
32976192 AATTCTATAAATCGAGGGTAAAATAGTAATTCTGTA-AACT-GAGGGTAAAACGGTAATTCTATA
1 AATTCTATAAATCGAGGGTAAAACAGTAATT-T-TACAAATCGAGGGTAAAACGGTAATTCTATA
*
32976255 AATTCTATAAATCGAGGGTAAAACGGTAATTTTACAAATCGAGGGTAAAACGGTAATTCTATA
1 AATTCTATAAATCGAGGGTAAAACAGTAATTTTACAAATCGAGGGTAAAACGGTAATTCTATA
32976318 AAT
1 AAT
32976321 CGAGGGTACT
Statistics
Matches: 61, Mismatches: 3, Indels: 4
0.90 0.04 0.06
Matches are distributed among these distances:
61 2 0.03
62 4 0.07
63 55 0.90
ACGTcount: A:0.42, C:0.10, G:0.19, T:0.29
Consensus pattern (63 bp):
AATTCTATAAATCGAGGGTAAAACAGTAATTTTACAAATCGAGGGTAAAACGGTAATTCTATA
Found at i:32976408 original size:27 final size:27
Alignment explanation
Indices: 32976378--32976529 Score: 184
Period size: 27 Copynumber: 5.7 Consensus size: 27
32976368 TACAGGTCGA
* * *
32976378 GGGTATTTCAGTAATTTCACAAATTAG
1 GGGTATTTTAGTAATTTTACAAACTAG
*
32976405 GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTAGTAATTTTACAAACTAG
32976432 GGGTATTTT-GATAATTTTACAAACTAG
1 GGGTATTTTAG-TAATTTTACAAACTAG
* * * *
32976459 GGGTATTTTGGTAATTTTATAAACCAA
1 GGGTATTTTAGTAATTTTACAAACTAG
32976486 GGGTATTTTAGTAATTTTACAAAGC-A-
1 GGGTATTTTAGTAATTTTACAAA-CTAG
*
32976512 GGGTATTTTGGTAATTTT
1 GGGTATTTTAGTAATTTT
32976530 GTAAACCAAA
Statistics
Matches: 112, Mismatches: 10, Indels: 7
0.87 0.08 0.05
Matches are distributed among these distances:
26 18 0.16
27 92 0.82
28 2 0.02
ACGTcount: A:0.31, C:0.07, G:0.20, T:0.41
Consensus pattern (27 bp):
GGGTATTTTAGTAATTTTACAAACTAG
Found at i:32976463 original size:81 final size:81
Alignment explanation
Indices: 32976323--32976529 Score: 206
Period size: 81 Copynumber: 2.6 Consensus size: 81
32976313 CTATAAATCG
* * * ** ** *
32976323 AGGGTACTTTGGTAATTTTAC-AAGTCGAGGGTATTTCAATAATTTTACAGGTCGAGGGTATTTC
1 AGGGTATTTTGGTAATTTTACAAACTAG-GGGTATTTTGATAATTTTACAACTAGAGGGTATTTC
**
32976387 AGTAATTTCACAAATTA
65 AGTAATTTCACAAACCA
* *
32976404 GGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGATAATTTTACAAACTAG-GGGTATTTT
1 AGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGATAATTTTAC-AACTAGAGGGTATTTC
* * *
32976468 GGTAATTTTATAAACCA
65 AGTAATTTCACAAACCA
* *
32976485 AGGGTATTTTAGTAATTTTACAAAGC-A-GGGTATTTTGGTAATTTT
1 AGGGTATTTTGGTAATTTTACAAA-CTAGGGGTATTTTGATAATTTT
32976530 GTAAACCAAA
Statistics
Matches: 105, Mismatches: 18, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
80 17 0.16
81 80 0.76
82 8 0.08
ACGTcount: A:0.30, C:0.08, G:0.21, T:0.40
Consensus pattern (81 bp):
AGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGATAATTTTACAACTAGAGGGTATTTCA
GTAATTTCACAAACCA
Found at i:32979420 original size:68 final size:67
Alignment explanation
Indices: 32979348--32979497 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
32979338 CATCATGTGT
* * * *
32979348 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
32979410 ATGTAG
62 ATGTAG
** * *
32979416 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
32979481 AG
66 AG
32979483 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
32979498 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:32979453 original size:64 final size:64
Alignment explanation
Indices: 32979372--32979555 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
32979362 AGACATTATG
* *
32979372 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
32979436 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
32979501 AA
63 AA
* * * *
32979503 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
32979556 CGAACTATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 21 0.21
65 8 0.08
66 16 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:32980646 original size:2 final size:2
Alignment explanation
Indices: 32980639--32980663 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
32980629 TCATGACATG
32980639 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
32980664 GACTAGTCTC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:32992191 original size:29 final size:31
Alignment explanation
Indices: 32992158--32992228 Score: 101
Period size: 31 Copynumber: 2.4 Consensus size: 31
32992148 CTCTTGCTCG
32992158 TTCTCTGT-GTAT-TTTAAGCTTCGCCTTAT
1 TTCTCTGTGGTATCTTTAAGCTTCGCCTTAT
* *
32992187 TTCTCTTTGGTTTCTTTAAGCTTCGCCTTAT
1 TTCTCTGTGGTATCTTTAAGCTTCGCCTTAT
*
32992218 TTCTCTTTGGT
1 TTCTCTGTGGT
32992229 TTCTACGAAC
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
29 7 0.18
30 3 0.08
31 28 0.74
ACGTcount: A:0.10, C:0.21, G:0.14, T:0.55
Consensus pattern (31 bp):
TTCTCTGTGGTATCTTTAAGCTTCGCCTTAT
Found at i:32992206 original size:31 final size:31
Alignment explanation
Indices: 32992170--32992232 Score: 126
Period size: 31 Copynumber: 2.0 Consensus size: 31
32992160 CTCTGTGTAT
32992170 TTTAAGCTTCGCCTTATTTCTCTTTGGTTTC
1 TTTAAGCTTCGCCTTATTTCTCTTTGGTTTC
32992201 TTTAAGCTTCGCCTTATTTCTCTTTGGTTTC
1 TTTAAGCTTCGCCTTATTTCTCTTTGGTTTC
32992232 T
1 T
32992233 ACGAACTATG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.10, C:0.22, G:0.13, T:0.56
Consensus pattern (31 bp):
TTTAAGCTTCGCCTTATTTCTCTTTGGTTTC
Found at i:33000413 original size:29 final size:31
Alignment explanation
Indices: 33000380--33000450 Score: 101
Period size: 31 Copynumber: 2.4 Consensus size: 31
33000370 CTCTTGCTCG
33000380 TTCTCTGT-GTAT-TTTAAGCTTCGCCTTAT
1 TTCTCTGTGGTATCTTTAAGCTTCGCCTTAT
* *
33000409 TTCTCTTTGGTTTCTTTAAGCTTCGCCTTAT
1 TTCTCTGTGGTATCTTTAAGCTTCGCCTTAT
*
33000440 TTCTCTTTGGT
1 TTCTCTGTGGT
33000451 TTCTACGAAC
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
29 7 0.18
30 3 0.08
31 28 0.74
ACGTcount: A:0.10, C:0.21, G:0.14, T:0.55
Consensus pattern (31 bp):
TTCTCTGTGGTATCTTTAAGCTTCGCCTTAT
Found at i:33000428 original size:31 final size:31
Alignment explanation
Indices: 33000392--33000454 Score: 126
Period size: 31 Copynumber: 2.0 Consensus size: 31
33000382 CTCTGTGTAT
33000392 TTTAAGCTTCGCCTTATTTCTCTTTGGTTTC
1 TTTAAGCTTCGCCTTATTTCTCTTTGGTTTC
33000423 TTTAAGCTTCGCCTTATTTCTCTTTGGTTTC
1 TTTAAGCTTCGCCTTATTTCTCTTTGGTTTC
33000454 T
1 T
33000455 ACGAACTATG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.10, C:0.22, G:0.13, T:0.56
Consensus pattern (31 bp):
TTTAAGCTTCGCCTTATTTCTCTTTGGTTTC
Found at i:33008606 original size:29 final size:31
Alignment explanation
Indices: 33008573--33008643 Score: 101
Period size: 31 Copynumber: 2.4 Consensus size: 31
33008563 CTCTTGCTCG
33008573 TTCTCTGT-GTAT-TTTAAGCTTCGCCTTAT
1 TTCTCTGTGGTATCTTTAAGCTTCGCCTTAT
* *
33008602 TTCTCTTTGGTTTCTTTAAGCTTCGCCTTAT
1 TTCTCTGTGGTATCTTTAAGCTTCGCCTTAT
*
33008633 TTCTCTTTGGT
1 TTCTCTGTGGT
33008644 TTCTACGAAC
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
29 7 0.18
30 3 0.08
31 28 0.74
ACGTcount: A:0.10, C:0.21, G:0.14, T:0.55
Consensus pattern (31 bp):
TTCTCTGTGGTATCTTTAAGCTTCGCCTTAT
Found at i:33008621 original size:31 final size:31
Alignment explanation
Indices: 33008585--33008647 Score: 126
Period size: 31 Copynumber: 2.0 Consensus size: 31
33008575 CTCTGTGTAT
33008585 TTTAAGCTTCGCCTTATTTCTCTTTGGTTTC
1 TTTAAGCTTCGCCTTATTTCTCTTTGGTTTC
33008616 TTTAAGCTTCGCCTTATTTCTCTTTGGTTTC
1 TTTAAGCTTCGCCTTATTTCTCTTTGGTTTC
33008647 T
1 T
33008648 ACGAACTATG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.10, C:0.22, G:0.13, T:0.56
Consensus pattern (31 bp):
TTTAAGCTTCGCCTTATTTCTCTTTGGTTTC
Found at i:33017895 original size:46 final size:45
Alignment explanation
Indices: 33017845--33018113 Score: 242
Period size: 46 Copynumber: 5.8 Consensus size: 45
33017835 TGGTTGAGCA
* *
33017845 TCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAACG
* * *
33017891 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAAC---G
* *
33017936 CATCTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAGCG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAACG
* * *** * *
33017984 TCCGAACTTGTTGAGTTGAGTCCAAGTTCGAGAGATGTAACTAGG--CA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GGAACG
*
33018031 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAACG
* *
33018077 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
33018114 GCGGGTTACT
Statistics
Matches: 180, Mismatches: 27, Indels: 32
0.75 0.11 0.13
Matches are distributed among these distances:
42 2 0.01
43 5 0.03
44 2 0.01
45 4 0.02
46 95 0.53
47 59 0.33
48 4 0.02
49 2 0.01
50 5 0.03
51 2 0.01
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAACG
Found at i:33017959 original size:47 final size:47
Alignment explanation
Indices: 33017891--33018059 Score: 202
Period size: 47 Copynumber: 3.6 Consensus size: 47
33017881 GATGCGAATG
33017891 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCA
* * * * *
33017938 TCTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGT---GA-GCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
* * *
33017984 TCCGAACTTGTTGAGTTGAGTCCAAGTTCGAGAGATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCA
*
33018031 TCCGAGCTCGTTGAGTTGAGTCCGAGTTC
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC
33018060 ACTTATGGAT
Statistics
Matches: 99, Mismatches: 16, Indels: 14
0.77 0.12 0.11
Matches are distributed among these distances:
43 5 0.05
45 1 0.01
46 29 0.29
47 57 0.58
48 2 0.02
50 5 0.05
ACGTcount: A:0.22, C:0.19, G:0.30, T:0.30
Consensus pattern (47 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCA
Found at i:33018001 original size:93 final size:93
Alignment explanation
Indices: 33017842--33018105 Score: 429
Period size: 93 Copynumber: 2.8 Consensus size: 93
33017832 GGATGGTTGA
* *
33017842 GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
*
33017907 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGAGAGATGTAACTAG
* * * *
33017935 GCATCTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAGCGTCCGAACTTGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
*
33018000 TGAGTCCAAGTTCGAGAGATGTAACTAG
66 TGAGTCCGAGTTCGAGAGATGTAACTAG
* * *
33018028 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
33018093 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
33018106 ACTTATGGGC
Statistics
Matches: 155, Mismatches: 16, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 155 1.00
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGAGAGATGTAACTAG
Found at i:33021400 original size:29 final size:29
Alignment explanation
Indices: 33021367--33021497 Score: 210
Period size: 29 Copynumber: 4.6 Consensus size: 29
33021357 CCTTCGAGCT
** * *
33021367 CGCACACCCAGTGCCGTATTTTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
33021396 TGCACACTTAGTG-CATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
33021424 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
33021453 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
33021482 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
33021498 ATCTCGTCAC
Statistics
Matches: 95, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
28 25 0.26
29 70 0.74
ACGTcount: A:0.26, C:0.32, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:33021457 original size:86 final size:86
Alignment explanation
Indices: 33021338--33021495 Score: 217
Period size: 86 Copynumber: 1.8 Consensus size: 86
33021328 AATTTAAGCC
* * * * * *
33021338 CGCACACATAGTGCCATACCCTTCGAGCTCGCACACCCAGTGCCGTATTTTTCCAGCATGCACAC
1 CGCACACATAGTGCCATACACTTCCAGCACGCACACCCAGTGCCATATATTTCCAGCACGCACAC
33021403 TTAGTGCATATATTTCCAGCA
66 TTAGTGCATATATTTCCAGCA
* * * **
33021424 CGCACACTTAGTGCCATATATTTCCAGCACGCACACTTAGTGCCATATATTTCCAGCACGCACAC
1 CGCACACATAGTGCCATACACTTCCAGCACGCACACCCAGTGCCATATATTTCCAGCACGCACAC
33021489 TTAGTGC
66 TTAGTGC
33021496 CAATCTCGTC
Statistics
Matches: 61, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
86 61 1.00
ACGTcount: A:0.25, C:0.33, G:0.16, T:0.26
Consensus pattern (86 bp):
CGCACACATAGTGCCATACACTTCCAGCACGCACACCCAGTGCCATATATTTCCAGCACGCACAC
TTAGTGCATATATTTCCAGCA
Found at i:33021494 original size:58 final size:58
Alignment explanation
Indices: 33021338--33021497 Score: 214
Period size: 57 Copynumber: 2.8 Consensus size: 58
33021328 AATTTAAGCC
* *** * * ** * *
33021338 CGCACACATAGTGCCATACCCTTCGAGCTCGCACACCCAGTGCCGTATTTTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCACGCACACTTAGTGCCATATATTTCCAGCA
*
33021396 TGCACACTTAGTG-CATATATTTCCAGCACGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCACGCACACTTAGTGCCATATATTTCCAGCA
33021453 CGCACACTTAGTGCCATATATTTCCAGCACGCACACTTAGTGCCA
1 CGCACACTTAGTGCCATATATTTCCAGCACGCACACTTAGTGCCA
33021498 ATCTCGTCAC
Statistics
Matches: 89, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
57 47 0.53
58 42 0.47
ACGTcount: A:0.26, C:0.33, G:0.16, T:0.26
Consensus pattern (58 bp):
CGCACACTTAGTGCCATATATTTCCAGCACGCACACTTAGTGCCATATATTTCCAGCA
Found at i:33029437 original size:29 final size:29
Alignment explanation
Indices: 33029404--33029535 Score: 210
Period size: 29 Copynumber: 4.6 Consensus size: 29
33029394 CCTTCGAGCT
** * *
33029404 CGCACACCCAGTGCCGTATTTTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
* *
33029433 TGCACACTTAGTGTCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
33029462 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
33029491 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
33029520 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
33029536 ATCTCGTCAC
Statistics
Matches: 95, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
29 95 1.00
ACGTcount: A:0.26, C:0.32, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:33029438 original size:58 final size:58
Alignment explanation
Indices: 33029375--33029535 Score: 178
Period size: 58 Copynumber: 2.8 Consensus size: 58
33029365 AATTTAAGCC
* * * * * *
33029375 CGCACACATAGTGCCATACCCTTCGAGCTCGCACACCCAGTGCCGTATTTTTCCAGCA
1 CGCACACTTAGTGCCATACACTTCCAGCACGCACACCCAGTGCCATATATTTCCAGCA
* * * * **
33029433 TGCACACTTAGTGTCATATATTTCCAGCACGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATACACTTCCAGCACGCACACCCAGTGCCATATATTTCCAGCA
* * **
33029491 CGCACACTTAGTGCCATATATTTCCAGCACGCACACTTAGTGCCA
1 CGCACACTTAGTGCCATACACTTCCAGCACGCACACCCAGTGCCA
33029536 ATCTCGTCAC
Statistics
Matches: 89, Mismatches: 14, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
58 89 1.00
ACGTcount: A:0.25, C:0.33, G:0.16, T:0.26
Consensus pattern (58 bp):
CGCACACTTAGTGCCATACACTTCCAGCACGCACACCCAGTGCCATATATTTCCAGCA
Found at i:33033668 original size:2 final size:2
Alignment explanation
Indices: 33033661--33033691 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
33033651 AGCTATTGCT
33033661 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
33033692 CTACGTATTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:33034588 original size:43 final size:43
Alignment explanation
Indices: 33034522--33034633 Score: 145
Period size: 43 Copynumber: 2.6 Consensus size: 43
33034512 AGGGGTGTTA
* * * *
33034522 CAGACAGGGTCTTAC-TCGAAATCATAATACAATATCAATGTCC
1 CAGACATGGTCTTACAT-GTAATCACAATACAATACCAATGTCC
* *
33034565 TAGACATGGTCTTACATGTAATCACAATACAATGCCAATGTCC
1 CAGACATGGTCTTACATGTAATCACAATACAATACCAATGTCC
*
33034608 CAGACATGGTTTTACATGTAATCACA
1 CAGACATGGTCTTACATGTAATCACA
33034634 TCTCGATAAT
Statistics
Matches: 60, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
43 59 0.98
44 1 0.02
ACGTcount: A:0.36, C:0.22, G:0.14, T:0.28
Consensus pattern (43 bp):
CAGACATGGTCTTACATGTAATCACAATACAATACCAATGTCC
Found at i:33038898 original size:31 final size:31
Alignment explanation
Indices: 33038863--33038921 Score: 109
Period size: 31 Copynumber: 1.9 Consensus size: 31
33038853 TGCTTTCAAA
33038863 CTATCGCAGATCACTTTCACTTTTTCTTCAT
1 CTATCGCAGATCACTTTCACTTTTTCTTCAT
*
33038894 CTATCGCGGATCACTTTCACTTTTTCTT
1 CTATCGCAGATCACTTTCACTTTTTCTT
33038922 TAGTCTCTCT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.17, C:0.29, G:0.08, T:0.46
Consensus pattern (31 bp):
CTATCGCAGATCACTTTCACTTTTTCTTCAT
Found at i:33042914 original size:40 final size:40
Alignment explanation
Indices: 33042816--33042965 Score: 132
Period size: 40 Copynumber: 3.8 Consensus size: 40
33042806 AATTGAATGA
* * * **
33042816 TATCCGGGCTAAGCCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGTCA-TAC
* *
33042856 TAT-CGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGT--CATAC
*
33042896 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTCATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTCATAC
*
33042935 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
33042966 ACATGGTTAT
Statistics
Matches: 90, Mismatches: 11, Indels: 18
0.76 0.09 0.15
Matches are distributed among these distances:
38 1 0.01
39 33 0.37
40 54 0.60
41 2 0.02
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATAC
Found at i:33042979 original size:40 final size:40
Alignment explanation
Indices: 33042853--33042981 Score: 145
Period size: 40 Copynumber: 3.2 Consensus size: 40
33042843 ATGCTGGAAA
* * *
33042853 TTATAT-CGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * * **
33042892 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* *
33042932 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
33042972 TTATATCCGG
1 TTATATCCGG
33042982 TTATATTCCG
Statistics
Matches: 72, Mismatches: 16, Indels: 3
0.79 0.18 0.03
Matches are distributed among these distances:
39 5 0.07
40 67 0.93
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:33046866 original size:20 final size:21
Alignment explanation
Indices: 33046833--33046871 Score: 55
Period size: 20 Copynumber: 1.9 Consensus size: 21
33046823 CAGCCAAAAC
33046833 ATGCCAATTCATAA-CAATTT
1 ATGCCAATTCATAATCAATTT
33046853 ATGCCAAATT-ATAATCAAT
1 ATGCC-AATTCATAATCAAT
33046872 CATTTCACAA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
20 9 0.53
21 8 0.47
ACGTcount: A:0.44, C:0.18, G:0.05, T:0.33
Consensus pattern (21 bp):
ATGCCAATTCATAATCAATTT
Found at i:33047751 original size:43 final size:43
Alignment explanation
Indices: 33047695--33047860 Score: 192
Period size: 43 Copynumber: 3.9 Consensus size: 43
33047685 AGCTCACACA
* * * *
33047695 ATGCC-ATATCCCAGATATGGTCTTACATGTTATCAC-ATATCG
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACAATA-CG
* * * *
33047737 ATGCCACTGTCCCAGACAAGGTCTTACACGAAATCATAATACG
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACAATACG
* *
33047780 ATGCCAATGTTCCAGACATGGTCTTACACGTAATCACAATACC
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACAATACG
* * *
33047823 ATGTCAATGTCTCAGACATGGTCTTACATGTAATCACA
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACA
33047861 TCTTGATAAT
Statistics
Matches: 104, Mismatches: 18, Indels: 3
0.83 0.14 0.02
Matches are distributed among these distances:
42 5 0.05
43 96 0.92
44 3 0.03
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.28
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACAATACG
Found at i:33049042 original size:31 final size:31
Alignment explanation
Indices: 33049004--33049082 Score: 133
Period size: 31 Copynumber: 2.5 Consensus size: 31
33048994 TTTAACGGTT
33049004 ACTGGGCCGAAGCCTTTTCA-AAACTCATATC
1 ACTGGGCCGAAGCCTTTTCATAAA-TCATATC
33049035 ACTGGGCCGAAGCCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
*
33049066 ATTGGGCCGAAGCCTTT
1 ACTGGGCCGAAGCCTTT
33049083 ACTGTAAATG
Statistics
Matches: 46, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
31 43 0.93
32 3 0.07
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.28
Consensus pattern (31 bp):
ACTGGGCCGAAGCCTTTTCATAAATCATATC
Found at i:33049157 original size:42 final size:42
Alignment explanation
Indices: 33049110--33049197 Score: 131
Period size: 42 Copynumber: 2.1 Consensus size: 42
33049100 CCTTAGGCCT
* ** *
33049110 ATTTCAATATCACATGTAATGTCAATGGATGTATACAAGCCC
1 ATTTCAATATCACATGAAATACCAATGAATGTATACAAGCCC
*
33049152 ATTTCAATATCACATGAAATACCAATGAATGTATGCAAGCCC
1 ATTTCAATATCACATGAAATACCAATGAATGTATACAAGCCC
33049194 ATTT
1 ATTT
33049198 GGGGAGACTA
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
42 41 1.00
ACGTcount: A:0.38, C:0.19, G:0.12, T:0.31
Consensus pattern (42 bp):
ATTTCAATATCACATGAAATACCAATGAATGTATACAAGCCC
Found at i:33049413 original size:26 final size:26
Alignment explanation
Indices: 33049342--33049516 Score: 273
Period size: 26 Copynumber: 6.8 Consensus size: 26
33049332 CCTCTTTAGT
**
33049342 AACTGGGGCA-AAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCAATA
33049367 AACTGGGGCA-AAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAATA
**
33049392 AACTGGGGCATAAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCAATA
*
33049418 AACTGGGGCATAAGCCCTTTTGAATA
1 AACTGGGGCATAAGCCCTTTTCAATA
* *
33049444 AATTGGGGCATAAGCCCTTTTCAGTA
1 AACTGGGGCATAAGCCCTTTTCAATA
33049470 AACTGGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAATA
33049496 AACTGGGGCATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTT
33049517 GCACTTCCTC
Statistics
Matches: 137, Mismatches: 12, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
25 33 0.24
26 104 0.76
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.27
Consensus pattern (26 bp):
AACTGGGGCATAAGCCCTTTTCAATA
Found at i:33049455 original size:52 final size:52
Alignment explanation
Indices: 33049342--33049516 Score: 309
Period size: 52 Copynumber: 3.4 Consensus size: 52
33049332 CCTCTTTAGT
33049342 AACTGGGGCA-AAGCCCTTTTCGGTAAACTGGGGCA-AAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATA
*
33049392 AACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTGAATA
1 AACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATA
* *
33049444 AATTGGGGCATAAGCCCTTTTCAGTAAACTGGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATA
33049496 AACTGGGGCATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTT
33049517 GCACTTCCTC
Statistics
Matches: 118, Mismatches: 5, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
50 10 0.08
51 25 0.21
52 83 0.70
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.27
Consensus pattern (52 bp):
AACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATA
Found at i:33050418 original size:27 final size:27
Alignment explanation
Indices: 33050322--33050408 Score: 120
Period size: 27 Copynumber: 3.2 Consensus size: 27
33050312 TATTTTCCAT
* * * *
33050322 TTTACCATATAGGGGTATTACGGTCAC
1 TTTACCCTACAGGGGTTTTACGGTCTC
*
33050349 TTTACCCTACAGGGGATTTACGGTCTC
1 TTTACCCTACAGGGGTTTTACGGTCTC
*
33050376 TTTACCCTACAGGGGTTTTACGGTCTT
1 TTTACCCTACAGGGGTTTTACGGTCTC
33050403 TTTACC
1 TTTACC
33050409 TAATAGGGGT
Statistics
Matches: 53, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 53 1.00
ACGTcount: A:0.20, C:0.23, G:0.21, T:0.37
Consensus pattern (27 bp):
TTTACCCTACAGGGGTTTTACGGTCTC
Found at i:33050646 original size:81 final size:80
Alignment explanation
Indices: 33050550--33050784 Score: 346
Period size: 81 Copynumber: 2.9 Consensus size: 80
33050540 TTTGTAAATC
33050550 AGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTTACAAACCAGTGGTATTTT
1 AGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTTACAAACCAG-GGTATTTT
*
33050615 GGTAATTTTACAAACT
65 AGTAATTTTACAAACT
* *
33050631 AGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCTGTAATTTTACAAACCAGGGGTATTGT
1 AGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTTACAAACCA-GGGTATTTT
*
33050696 AGCAATTTTACAAACT
65 AGTAATTTTACAAACT
** * * **
33050712 A-GGGTATTTTGGTAATTTTACTGATCGAGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTT
1 AGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTTACAAACC-AGGGTATTTT
33050776 AGTAATTTT
65 AGTAATTTT
33050785 GTAAATCGAG
Statistics
Matches: 139, Mismatches: 13, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
80 61 0.44
81 77 0.55
82 1 0.01
ACGTcount: A:0.29, C:0.08, G:0.22, T:0.41
Consensus pattern (80 bp):
AGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTTACAAACCAGGGTATTTTA
GTAATTTTACAAACT
Found at i:33050789 original size:27 final size:27
Alignment explanation
Indices: 33050441--33050784 Score: 246
Period size: 27 Copynumber: 12.7 Consensus size: 27
33050431 TCATCCTACG
* * *
33050441 AGGGTGTTTTGGTAAATCTACAAACCA
1 AGGGTATTTTGGTAATTTTACAAACCA
** **
33050468 AGGGTATTTCAGTAATTTTGTAAACCA
1 AGGGTATTTTGGTAATTTTACAAACCA
** *** * **
33050495 CTGGTATTTCCATAATTTTTAGAAAGTTA
1 AGGGTATTTTGGTAA-TTTTACAAA-CCA
* ** *
33050524 AGGGTATTTCT-GTAACTTTGTAAATCA
1 AGGGTATTT-TGGTAATTTTACAAACCA
* ***
33050551 GGGGTATTTTGGTAATTTTACAAATTG
1 AGGGTATTTTGGTAATTTTACAAACCA
*
33050578 AGGGTATTTCGGTAATTTTACAAACC-
1 AGGGTATTTTGGTAATTTTACAAACCA
*
33050604 AGTGGTATTTTGGTAATTTTACAAACTA
1 AG-GGTATTTTGGTAATTTTACAAACCA
* ***
33050632 GGGGTATTTTGGTAATTTTACAAATTG
1 AGGGTATTTTGGTAATTTTACAAACCA
33050659 AGGGTATTTCT-GTAATTTTACAAACCA
1 AGGGTATTT-TGGTAATTTTACAAACCA
* * * * *
33050686 GGGGTATTGTAGCAATTTTACAAA-CT
1 AGGGTATTTTGGTAATTTTACAAACCA
** * *
33050712 AGGGTATTTTGGTAATTTTACTGATCG
1 AGGGTATTTTGGTAATTTTACAAACCA
**
33050739 AGGGTATTTTGGTAATTTTGTAAACCA
1 AGGGTATTTTGGTAATTTTACAAACCA
*
33050766 AGGGTATTTTAGTAATTTT
1 AGGGTATTTTGGTAATTTT
33050785 GTAAATCGAG
Statistics
Matches: 248, Mismatches: 60, Indels: 18
0.76 0.18 0.06
Matches are distributed among these distances:
26 23 0.09
27 199 0.80
28 15 0.06
29 11 0.04
ACGTcount: A:0.30, C:0.09, G:0.21, T:0.40
Consensus pattern (27 bp):
AGGGTATTTTGGTAATTTTACAAACCA
Found at i:33050796 original size:27 final size:27
Alignment explanation
Indices: 33050524--33050920 Score: 236
Period size: 27 Copynumber: 14.7 Consensus size: 27
33050514 TAGAAAGTTA
* *
33050524 AGGGTATTTCT-GTAACTTTGTAAATC-
1 AGGGTATTT-TGGTAATTTTATAAATCG
* *
33050550 AGGGGTATTTTGGTAATTTTACAAATTG
1 A-GGGTATTTTGGTAATTTTATAAATCG
* * *
33050578 AGGGTATTTCGGTAATTTTACAAA-CC
1 AGGGTATTTTGGTAATTTTATAAATCG
* *
33050604 AGTGGTATTTTGGTAATTTTACAAA-CT
1 AG-GGTATTTTGGTAATTTTATAAATCG
* *
33050631 AGGGGTATTTTGGTAATTTTACAAATTG
1 A-GGGTATTTTGGTAATTTTATAAATCG
* *
33050659 AGGGTATTTCT-GTAATTTTACAAA-CC
1 AGGGTATTT-TGGTAATTTTATAAATCG
* * * * *
33050685 AGGGGTATTGTAGCAATTTTACAAA-CT
1 A-GGGTATTTTGGTAATTTTATAAATCG
*
33050712 AGGGTATTTTGGTAATTTTACT-GATCG
1 AGGGTATTTTGGTAATTTTA-TAAATCG
* * *
33050739 AGGGTATTTTGGTAATTTTGTAAACCA
1 AGGGTATTTTGGTAATTTTATAAATCG
* *
33050766 AGGGTATTTTAGTAATTTTGTAAATCG
1 AGGGTATTTTGGTAATTTTATAAATCG
*** * *
33050793 AGGGTAAAATAGTAATTCTATAAATCG
1 AGGGTATTTTGGTAATTTTATAAATCG
**** * *
33050820 AGGGTAAAACGGTAATTCTGTAAATCG
1 AGGGTATTTTGGTAATTTTATAAATCG
**** * *
33050847 AGGGTAAAACGGTAATTCTGTAAATCG
1 AGGGTATTTTGGTAATTTTATAAATCG
**** * *
33050874 AGGGTAAAACGGTAATTCTATAAATTG
1 AGGGTATTTTGGTAATTTTATAAATCG
33050901 AGGGTACTTTT-GTAATTTTA
1 AGGGTA-TTTTGGTAATTTTA
33050921 CAATTTGAGG
Statistics
Matches: 314, Mismatches: 44, Indels: 25
0.82 0.11 0.07
Matches are distributed among these distances:
26 24 0.08
27 286 0.91
28 4 0.01
ACGTcount: A:0.32, C:0.09, G:0.22, T:0.38
Consensus pattern (27 bp):
AGGGTATTTTGGTAATTTTATAAATCG
Found at i:33052851 original size:46 final size:46
Alignment explanation
Indices: 33052801--33052976 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
33052791 TATTTGGGCA
33052801 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
33052847 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
33052894 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
33052940 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
33052977 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:33052956 original size:93 final size:93
Alignment explanation
Indices: 33052797--33052968 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
33052787 TGGATATTTG
* *
33052797 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
33052862 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
33052890 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
33052955 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
33052969 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:33055084 original size:18 final size:18
Alignment explanation
Indices: 33055061--33055096 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
33055051 TATGCAAGTG
33055061 TAGAAATCATCAAAAACC
1 TAGAAATCATCAAAAACC
33055079 TAGAAATCATCAAAAACC
1 TAGAAATCATCAAAAACC
33055097 GAGCTCAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.56, C:0.22, G:0.06, T:0.17
Consensus pattern (18 bp):
TAGAAATCATCAAAAACC
Found at i:33055090 original size:72 final size:72
Alignment explanation
Indices: 33054995--33055142 Score: 253
Period size: 72 Copynumber: 2.1 Consensus size: 72
33054985 CAAAGCAATG
*
33054995 ATCACAAAAACATAGAAATCATCAAAAACTGAGCTCAAAACATACCTCAATCAAGCTATGCAAGT
1 ATCACAAAAACATAGAAATCATCAAAAACCGAGCTCAAAACATACCTCAATCAAGCTATGCAAGT
33055060 GTAGAA-
66 GTAGAAT
*
33055066 ATCATCAAAAACCTAGAAATCATCAAAAACCGAGCTCAAAACATACCTCAATCAAGCTATGCAAG
1 ATCA-CAAAAACATAGAAATCATCAAAAACCGAGCTCAAAACATACCTCAATCAAGCTATGCAAG
*
33055131 TGTCGAAT
65 TGTAGAAT
33055139 ATCA
1 ATCA
33055143 AAGCCCTATT
Statistics
Matches: 72, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
71 4 0.06
72 64 0.89
73 4 0.06
ACGTcount: A:0.47, C:0.23, G:0.11, T:0.19
Consensus pattern (72 bp):
ATCACAAAAACATAGAAATCATCAAAAACCGAGCTCAAAACATACCTCAATCAAGCTATGCAAGT
GTAGAAT
Found at i:33056582 original size:24 final size:24
Alignment explanation
Indices: 33056555--33056613 Score: 66
Period size: 25 Copynumber: 2.4 Consensus size: 24
33056545 TTGGAGGTCT
33056555 AGCCTCTTTTAAT-AACTAGGGCAA
1 AGCC-CTTTTAATAAACTAGGGCAA
** *
33056579 AGCCCTTTTCGGTAAACTGGGGCAA
1 AGCCCTTTT-AATAAACTAGGGCAA
33056604 AGCCCTTTTA
1 AGCCCTTTTA
33056614 GCACTTCCTC
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
23 5 0.17
24 5 0.17
25 19 0.66
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (24 bp):
AGCCCTTTTAATAAACTAGGGCAA
Found at i:33056894 original size:27 final size:27
Alignment explanation
Indices: 33056859--33057175 Score: 384
Period size: 27 Copynumber: 11.8 Consensus size: 27
33056849 TTCTACCCTA
* * * *
33056859 CAAGTGTATTTTAGTAATTTCACAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAC
* * *
33056886 CAGGGGTATTTTGGTAACTTTATAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAC
33056913 CAAGGGTATTTTGGTAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAC
**
33056940 CAAGGGTATTTTGGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAC
** *
33056967 CAAGGGTATTTTGGTAATTTTGTAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAC
33056994 CAAGGGTATTTTGGTAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAC
* *
33057021 CAGGGGTATTTTGGTAATTTTATAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAC
* *
33057048 CAAAGGTATTTTAGTAATTTTAC-AAC
1 CAAGGGTATTTTGGTAATTTTACAAAC
* *
33057074 CAGGGGTATTTTAGTAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAC
* * *
33057101 CAGGGGTATTTTGGTAATTTTACTAAT
1 CAAGGGTATTTTGGTAATTTTACAAAC
* ** *
33057128 CGAGGGTATTTTGGTAATTTTGTAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAC
**
33057155 CAAGGGTATTTCAGTAATTTT
1 CAAGGGTATTTTGGTAATTTT
33057176 GTAAATCGAG
Statistics
Matches: 254, Mismatches: 35, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
26 24 0.09
27 230 0.91
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.40
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTACAAAC
Found at i:33057199 original size:27 final size:27
Alignment explanation
Indices: 33057177--33057539 Score: 432
Period size: 27 Copynumber: 13.5 Consensus size: 27
33057167 AGTAATTTTG
33057177 TAAATCGAGGGTAAAATGATAATTCTA
1 TAAATCGAGGGTAAAATGATAATTCTA
* * *
33057204 TAAATCGAGGGTAAAA-CAGTTATTCTG
1 TAAATCGAGGGTAAAATGA-TAATTCTA
* *
33057231 TAAGTCGAGGGTAAAATGGTAATTCTA
1 TAAATCGAGGGTAAAATGATAATTCTA
*
33057258 TAAATCGAGGGTAAAA-CAGTAATTCTA
1 TAAATCGAGGGTAAAATGA-TAATTCTA
*
33057285 TAAATCGAGGGTAAAA-CAGTAATTCTA
1 TAAATCGAGGGTAAAATGA-TAATTCTA
*
33057312 TAAATCGAGGGTAAAATGGTAATTCTA
1 TAAATCGAGGGTAAAATGATAATTCTA
* *
33057339 TAAAT-GAGGGTAAAATGGTAATTCTG
1 TAAATCGAGGGTAAAATGATAATTCTA
* * * *
33057365 TAAATTGAGGGTAAAA-CAGTAATTTTG
1 TAAATCGAGGGTAAAATGA-TAATTCTA
*
33057392 TAAATCGAGGGTAAAACGATAATTCTA
1 TAAATCGAGGGTAAAATGATAATTCTA
* *
33057419 TAAATTGAGGGTAAAATGGTAATTCTA
1 TAAATCGAGGGTAAAATGATAATTCTA
* *
33057446 TAAATCAAGGGTAAAATGGTAATTCTA
1 TAAATCGAGGGTAAAATGATAATTCTA
* *
33057473 TAAATCGAGGGTAAAACGGTAATTCTA
1 TAAATCGAGGGTAAAATGATAATTCTA
* *
33057500 TAAATCGAGGGTAAAACTG-TAATTTTG
1 TAAATCGAGGGTAAAA-TGATAATTCTA
33057527 TAAATCGAGGGTA
1 TAAATCGAGGGTA
33057540 CTTCGGTAAT
Statistics
Matches: 297, Mismatches: 31, Indels: 16
0.86 0.09 0.05
Matches are distributed among these distances:
26 26 0.09
27 269 0.91
28 2 0.01
ACGTcount: A:0.41, C:0.08, G:0.22, T:0.29
Consensus pattern (27 bp):
TAAATCGAGGGTAAAATGATAATTCTA
Found at i:33057200 original size:54 final size:54
Alignment explanation
Indices: 33057166--33057539 Score: 502
Period size: 54 Copynumber: 6.9 Consensus size: 54
33057156 AAGGGTATTT
* *
33057166 CAGTAATTTTGTAAATCGAGGGTAAAATGATAATTCTATAAATCGAGGGTAAAA
1 CAGTAATTCTATAAATCGAGGGTAAAATGATAATTCTATAAATCGAGGGTAAAA
* * * *
33057220 CAGTTATTCTGTAAGTCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAA
1 CAGTAATTCTATAAATCGAGGGTAAAATGATAATTCTATAAATCGAGGGTAAAA
*
33057274 CAGTAATTCTATAAATCGAGGGTAAAA-CAGTAATTCTATAAATCGAGGGTAAAA
1 CAGTAATTCTATAAATCGAGGGTAAAATGA-TAATTCTATAAATCGAGGGTAAAA
** * * *
33057328 TGGTAATTCTATAAAT-GAGGGTAAAATGGTAATTCTGTAAATTGAGGGTAAAA
1 CAGTAATTCTATAAATCGAGGGTAAAATGATAATTCTATAAATCGAGGGTAAAA
* * * *
33057381 CAGTAATTTTGTAAATCGAGGGTAAAACGATAATTCTATAAATTGAGGGTAAAA
1 CAGTAATTCTATAAATCGAGGGTAAAATGATAATTCTATAAATCGAGGGTAAAA
** * *
33057435 TGGTAATTCTATAAATCAAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAA
1 CAGTAATTCTATAAATCGAGGGTAAAATGATAATTCTATAAATCGAGGGTAAAA
* * *
33057489 CGGTAATTCTATAAATCGAGGGTAAAACTG-TAATTTTGTAAATCGAGGGTA
1 CAGTAATTCTATAAATCGAGGGTAAAA-TGATAATTCTATAAATCGAGGGTA
33057540 CTTCGGTAAT
Statistics
Matches: 282, Mismatches: 34, Indels: 8
0.87 0.10 0.02
Matches are distributed among these distances:
53 44 0.16
54 236 0.84
55 2 0.01
ACGTcount: A:0.41, C:0.08, G:0.22, T:0.30
Consensus pattern (54 bp):
CAGTAATTCTATAAATCGAGGGTAAAATGATAATTCTATAAATCGAGGGTAAAA
Found at i:33057210 original size:81 final size:81
Alignment explanation
Indices: 33056889--33057578 Score: 379
Period size: 81 Copynumber: 8.5 Consensus size: 81
33056879 CACAAATCAG
* * * * * * * ***
33056889 GGGTATTTTGGTAACTTTATAAACCAAGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGG
1 GGGTAATTTGGTAATTTTATAAATCAAGGGTATTTCGGTAATTTTATAAATCGAGGGTAAAATGG
* * * *
33056954 TAATTTTGTAAACCAA
66 TAATTCTATAAATCGA
* * * * * ***
33056970 GGGTATTTTGGTAATTTTGTAAATCAAGGGTATTTTGGTAATTTTACAAA-CCAGGGGTATTTTG
1 GGGTAATTTGGTAATTTTATAAATCAAGGGTATTTCGGTAATTTTATAAATCGA-GGGTAAAATG
* * *
33057034 GTAATTTTATAAACCAA
65 GTAATTCTATAAATCGA
* * * * * * ** * * ***
33057051 AGGTATTTTAGTAATTTTA-CAACCAGGGGTATTTTAGTAATTTTACAAA-CCAGGGGTATTTTG
1 GGGTAATTTGGTAATTTTATAAATCAAGGGTATTTCGGTAATTTTATAAATCGA-GGGTAAAATG
*
33057114 GTAATTTTACT-AATCGA
65 GTAATTCTA-TAAATCGA
* * * * *
33057131 GGGTATTTTGGTAATTTTGTAAATCAAGGGTATTTCAGTAATTTTGTAAATCGAGGGTAAAATGA
1 GGGTAATTTGGTAATTTTATAAATCAAGGGTATTTCGGTAATTTTATAAATCGAGGGTAAAATGG
33057196 TAATTCTATAAATCGA
66 TAATTCTATAAATCGA
**** * * * * * ** * **
33057212 GGGTAAAACAGTTATTCTGTAAGTCGAGGGTAAAAT-GGTAATTCTATAAATCGAGGGTAAAACA
1 GGGTAATTTGGTAATTTTATAAATCAAGGGT-ATTTCGGTAATTTTATAAATCGAGGGTAAAATG
33057276 GTAATTCTATAAATCGA
65 GTAATTCTATAAATCGA
**** * * ** *
33057293 GGGTAAAACAGTAATTCTATAAATCGAGGGTAAAAT-GGTAATTCTATAAAT-GAGGGTAAAATG
1 GGGTAATTTGGTAATTTTATAAATCAAGGGT-ATTTCGGTAATTTTATAAATCGAGGGTAAAATG
* *
33057356 GTAATTCTGTAAATTGA
65 GTAATTCTATAAATCGA
**** * * *** * * *
33057373 GGGTAAAACAGTAATTTTGTAAATCGAGGGTAAAACGATAATTCTATAAATTGAGGGTAAAATGG
1 GGGTAATTTGGTAATTTTATAAATCAAGGGTATTTCGGTAATTTTATAAATCGAGGGTAAAATGG
*
33057438 TAATTCTATAAATCAA
66 TAATTCTATAAATCGA
** * * *** *
33057454 GGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACT-
1 GGGTAATTTGGTAATTTTATAAATCAAGGGTATTTCGGTAATTTTATAAATCGAGGGTAAAA-TG
* *
33057518 GTAATTTTGTAAATCGA
65 GTAATTCTATAAATCGA
* * * * * * *
33057535 GGGTACTTCGGTAATTTTACAATTTAAGGGCATTTCAGTAATTT
1 GGGTAATTTGGTAATTTTATAAATCAAGGGTATTTCGGTAATTT
33057579 GGTAAACTAA
Statistics
Matches: 516, Mismatches: 84, Indels: 18
0.83 0.14 0.03
Matches are distributed among these distances:
79 3 0.01
80 140 0.27
81 368 0.71
82 5 0.01
ACGTcount: A:0.36, C:0.08, G:0.21, T:0.35
Consensus pattern (81 bp):
GGGTAATTTGGTAATTTTATAAATCAAGGGTATTTCGGTAATTTTATAAATCGAGGGTAAAATGG
TAATTCTATAAATCGA
Found at i:33057548 original size:27 final size:27
Alignment explanation
Indices: 33057113--33057553 Score: 358
Period size: 27 Copynumber: 16.4 Consensus size: 27
33057103 GGGGTATTTT
** *
33057113 GGTAATTTTACT-AATCGAGGGTATTTT
1 GGTAATTTTA-TAAATCGAGGGTAAATC
* * **
33057140 GGTAATTTTGTAAATCAAGGGTATTTC
1 GGTAATTTTATAAATCGAGGGTAAATC
* *
33057167 AGTAATTTTGTAAATCGAGGGTAAAAT-
1 GGTAATTTTATAAATCGAGGGT-AAATC
* * *
33057194 GATAATTCTATAAATCGAGGGTAAAAC
1 GGTAATTTTATAAATCGAGGGTAAATC
* * * * *
33057221 AGTTATTCTGTAAGTCGAGGGTAAAAT-
1 GGTAATTTTATAAATCGAGGGT-AAATC
* *
33057248 GGTAATTCTATAAATCGAGGGTAAAAC
1 GGTAATTTTATAAATCGAGGGTAAATC
* * *
33057275 AGTAATTCTATAAATCGAGGGTAAAAC
1 GGTAATTTTATAAATCGAGGGTAAATC
* *
33057302 AGTAATTCTATAAATCGAGGGTAAAAT-
1 GGTAATTTTATAAATCGAGGGT-AAATC
*
33057329 GGTAATTCTATAAAT-GAGGGTAAAAT-
1 GGTAATTTTATAAATCGAGGGT-AAATC
* * * *
33057355 GGTAATTCTGTAAATTGAGGGTAAAAC
1 GGTAATTTTATAAATCGAGGGTAAATC
* * *
33057382 AGTAATTTTGTAAATCGAGGGTAAAAC
1 GGTAATTTTATAAATCGAGGGTAAATC
* * *
33057409 GATAATTCTATAAATTGAGGGTAAAAT-
1 GGTAATTTTATAAATCGAGGGT-AAATC
* *
33057436 GGTAATTCTATAAATCAAGGGTAAAAT-
1 GGTAATTTTATAAATCGAGGGT-AAATC
* *
33057463 GGTAATTCTATAAATCGAGGGTAAAAC
1 GGTAATTTTATAAATCGAGGGTAAATC
* *
33057490 GGTAATTCTATAAATCGAGGGTAAAAC
1 GGTAATTTTATAAATCGAGGGTAAATC
* * **
33057517 TGTAATTTTGTAAATCGAGGGTACTTC
1 GGTAATTTTATAAATCGAGGGTAAATC
33057544 GGTAATTTTA
1 GGTAATTTTA
33057554 CAATTTAAGG
Statistics
Matches: 354, Mismatches: 50, Indels: 20
0.83 0.12 0.05
Matches are distributed among these distances:
26 38 0.11
27 305 0.86
28 11 0.03
ACGTcount: A:0.39, C:0.08, G:0.22, T:0.32
Consensus pattern (27 bp):
GGTAATTTTATAAATCGAGGGTAAATC
Found at i:33059787 original size:25 final size:25
Alignment explanation
Indices: 33059754--33059823 Score: 122
Period size: 25 Copynumber: 2.8 Consensus size: 25
33059744 CTCTTTTAAT
* *
33059754 AACTGGGGCAAAGCCCTTTTTGGTA
1 AACTAGGGCAAAGCCCTTTTCGGTA
33059779 AACTAGGGCAAAGCCCTTTTCGGTA
1 AACTAGGGCAAAGCCCTTTTCGGTA
33059804 AACTAGGGCAAAGCCCTTTT
1 AACTAGGGCAAAGCCCTTTT
33059824 AGCACTTCCT
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 43 1.00
ACGTcount: A:0.27, C:0.23, G:0.24, T:0.26
Consensus pattern (25 bp):
AACTAGGGCAAAGCCCTTTTCGGTA
Found at i:33060114 original size:27 final size:27
Alignment explanation
Indices: 33060084--33060362 Score: 378
Period size: 27 Copynumber: 10.3 Consensus size: 27
33060074 GGTATGTCAA
* * *
33060084 TAATTTCACAAATCAGGGGTATTTTGG
1 TAATTTTACAAACCAAGGGTATTTTGG
**
33060111 TAATTTTGTAAACCAAGGGTATTTTGG
1 TAATTTTACAAACCAAGGGTATTTTGG
*
33060138 TAATTTTACAAACCAAGGGTATTTTCG
1 TAATTTTACAAACCAAGGGTATTTTGG
** *
33060165 TAATTTTGTAAACCAACGGTATTTTGG
1 TAATTTTACAAACCAAGGGTATTTTGG
*
33060192 TAATTTTACAAACCAGGGGTATTTTGG
1 TAATTTTACAAACCAAGGGTATTTTGG
** *
33060219 TAATTTTGTAAACCAAAGGTATTTTGG
1 TAATTTTACAAACCAAGGGTATTTTGG
* *
33060246 TAATTTTACAAACTAGGGGTATTTTGG
1 TAATTTTACAAACCAAGGGTATTTTGG
* * *
33060273 TAATTTTATAAACCAAGTGTATTTTAG
1 TAATTTTACAAACCAAGGGTATTTTGG
* *
33060300 TAATTTTACAAACCAGGGGTATTTTAG
1 TAATTTTACAAACCAAGGGTATTTTGG
33060327 TAATTTTACAAACCAAGGGTATTTTGG
1 TAATTTTACAAACCAAGGGTATTTTGG
33060354 TAATTTTAC
1 TAATTTTAC
33060363 TGATGGTATT
Statistics
Matches: 217, Mismatches: 35, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 217 1.00
ACGTcount: A:0.32, C:0.10, G:0.18, T:0.40
Consensus pattern (27 bp):
TAATTTTACAAACCAAGGGTATTTTGG
Found at i:33060128 original size:54 final size:54
Alignment explanation
Indices: 33060084--33060410 Score: 446
Period size: 54 Copynumber: 6.1 Consensus size: 54
33060074 GGTATGTCAA
* *
33060084 TAATTTCACAAATCAGGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTGG
1 TAATTTTACAAACCAGGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTGG
* * *
33060138 TAATTTTACAAACCAAGGGTATTTTCGTAATTTTGTAAACCAACGGTATTTTGG
1 TAATTTTACAAACCAGGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTGG
*
33060192 TAATTTTACAAACCAGGGGTATTTTGGTAATTTTGTAAACCAAAGGTATTTTGG
1 TAATTTTACAAACCAGGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTGG
* * * *
33060246 TAATTTTACAAACTAGGGGTATTTTGGTAATTTTATAAACCAAGTGTATTTTAG
1 TAATTTTACAAACCAGGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTGG
* **
33060300 TAATTTTACAAACCAGGGGTATTTTAGTAATTTTACAAACCAAGGGTATTTTGG
1 TAATTTTACAAACCAGGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTGG
** * * * **
33060354 TAATTTTAC---TGA-TGGTATTTTGGTAATTTTGTAAATCAATGGTATTTCAG
1 TAATTTTACAAACCAGGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTGG
33060404 TAATTTT
1 TAATTTT
33060411 GTAAATCGAG
Statistics
Matches: 245, Mismatches: 28, Indels: 4
0.88 0.10 0.01
Matches are distributed among these distances:
50 37 0.15
51 1 0.00
54 207 0.84
ACGTcount: A:0.31, C:0.09, G:0.18, T:0.41
Consensus pattern (54 bp):
TAATTTTACAAACCAGGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTGG
Found at i:33060155 original size:81 final size:81
Alignment explanation
Indices: 33060070--33060410 Score: 377
Period size: 81 Copynumber: 4.3 Consensus size: 81
33060060 TTCTATCCTA
* * * * * *
33060070 CAAGGGTATGTCAATAATTTCACAAATCAGGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTT
1 CAAGGGTATTTCAGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTATAAACCAAGGGTATTT
33060135 TGGTAATTTTACAAAC
66 TGGTAATTTTACAAAC
** * * *
33060151 CAAGGGTATTTTC-GTAATTTTGTAAACCAACGGTATTTTGGTAATTTTACAAACCAGGGGTATT
1 CAAGGGTA-TTTCAGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTATAAACCAAGGGTATT
**
33060215 TTGGTAATTTTGTAAAC
65 TTGGTAATTTTACAAAC
* ** * * *
33060232 CAAAGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTATAAACCAAGTGTATTT
1 CAAGGGTATTTCAGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTATAAACCAAGGGTATTT
*
33060297 TAGTAATTTTACAAAC
66 TGGTAATTTTACAAAC
* * ** *
33060313 CAGGGGTATTTTAGTAATTTTACAAACCAAGGGTATTTTGGTAA-TTT-T--ACTGATGGTATTT
1 CAAGGGTATTTCAGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTATAAACCAAGGGTATTT
** *
33060374 TGGTAATTTTGTAAAT
66 TGGTAATTTTACAAAC
*
33060390 CAATGGTATTTCAGTAATTTT
1 CAAGGGTATTTCAGTAATTTT
33060411 GTAAATCGAG
Statistics
Matches: 216, Mismatches: 42, Indels: 8
0.81 0.16 0.03
Matches are distributed among these distances:
77 39 0.18
79 1 0.00
80 6 0.03
81 167 0.77
82 3 0.01
ACGTcount: A:0.31, C:0.09, G:0.19, T:0.40
Consensus pattern (81 bp):
CAAGGGTATTTCAGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTATAAACCAAGGGTATTT
TGGTAATTTTACAAAC
Found at i:33060785 original size:27 final size:27
Alignment explanation
Indices: 33060403--33060774 Score: 539
Period size: 27 Copynumber: 13.8 Consensus size: 27
33060393 TGGTATTTCA
* *
33060403 GTAATTTTGTAAATCGAGGGT-AAACG
1 GTAATTCTGTAAATCGAGGGTAAAATG
*
33060429 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAATG
* *
33060456 GTAATTCTGTAAGTCAAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAATG
*
33060483 GTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAATG
* **
33060510 GTAATTTTGTAAATCGAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAATG
* * *
33060537 TTAATTCTATAAATAGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAATG
*
33060564 GTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAATG
33060591 GTAATTCTGTAAATCGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAATG
* *
33060618 GTAATTTTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAATG
*
33060645 GTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAATG
* * *
33060672 ATAATTCTATAAATCGAAGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAATG
*
33060699 GTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAATG
* *
33060726 GTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAATG
33060753 GTAATTCTGTAAATCGAGGGTA
1 GTAATTCTGTAAATCGAGGGTA
33060775 CTTTGGTAAT
Statistics
Matches: 314, Mismatches: 31, Indels: 1
0.91 0.09 0.00
Matches are distributed among these distances:
26 20 0.06
27 294 0.94
ACGTcount: A:0.40, C:0.08, G:0.23, T:0.30
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAATG
Found at i:33067002 original size:27 final size:27
Alignment explanation
Indices: 33066972--33067059 Score: 149
Period size: 27 Copynumber: 3.3 Consensus size: 27
33066962 TTTGGGCTAA
33066972 ATGGGCCACACGAGGGTGTGGACCCAC
1 ATGGGCCACACGAGGGTGTGGACCCAC
* *
33066999 ATGGACTACACGAGGGTGTGGACCCAC
1 ATGGGCCACACGAGGGTGTGGACCCAC
33067026 ATGGGCCACACGAGGGTGTGGACCCAC
1 ATGGGCCACACGAGGGTGTGGACCCAC
*
33067053 TTGGGCC
1 ATGGGCC
33067060 GAATAATGAG
Statistics
Matches: 56, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 56 1.00
ACGTcount: A:0.22, C:0.28, G:0.36, T:0.14
Consensus pattern (27 bp):
ATGGGCCACACGAGGGTGTGGACCCAC
Found at i:33071008 original size:22 final size:22
Alignment explanation
Indices: 33070991--33071037 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
33070981 TTAGTCTTCT
*
33070991 TGTCTACTGCATTGAGTCATCC
1 TGTCTACAGCATTGAGTCATCC
* * *
33071013 TGTCTACAGCGTTGAGCCGTCC
1 TGTCTACAGCATTGAGTCATCC
33071035 TGT
1 TGT
33071038 TAACTTAGTG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.15, C:0.28, G:0.23, T:0.34
Consensus pattern (22 bp):
TGTCTACAGCATTGAGTCATCC
Found at i:33074545 original size:93 final size:93
Alignment explanation
Indices: 33074437--33074608 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
33074427 CGCCCATAAG
* *
33074437 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
33074502 ATGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
33074530 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
33074595 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
33074609 TCAACCATCC
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Done.