Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr03 135709677
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 135709677
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 114 of 438
Found at i:33074605 original size:46 final size:46
Alignment explanation
Indices: 33074430--33074605 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
33074420 TGTAACCCGC
* * *
33074430 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* * *
33074476 CCATAAGTGAACTCGGACTCAACTCAATGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
33074526 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
33074569 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
33074606 TGCTCAACCA
Statistics
Matches: 109, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 62 0.57
47 28 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:33078610 original size:32 final size:32
Alignment explanation
Indices: 33078574--33078635 Score: 97
Period size: 32 Copynumber: 1.9 Consensus size: 32
33078564 TTGAATTTCC
33078574 GTACATACATGTACCATCTCGTACCAATTTTT
1 GTACATACATGTACCATCTCGTACCAATTTTT
* * *
33078606 GTACATACCTGTACCGTCTTGTACCAATTT
1 GTACATACATGTACCATCTCGTACCAATTT
33078636 CATACTCAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.11, T:0.37
Consensus pattern (32 bp):
GTACATACATGTACCATCTCGTACCAATTTTT
Found at i:33078775 original size:42 final size:41
Alignment explanation
Indices: 33078746--33078863 Score: 200
Period size: 42 Copynumber: 2.8 Consensus size: 41
33078736 ACGCAATAAT
33078746 GCACACTAAGTGCCAATGCATAGTCGAAGCTATCCTGATCTC
1 GCACACTAAGTGCCAATGCATAGTCGAAGCTATCC-GATCTC
*
33078788 GCACACTAAGTGCCAATGCATAGCCGAAGCTATCCCGATCTC
1 GCACACTAAGTGCCAATGCATAGTCGAAGCTAT-CCGATCTC
*
33078830 GCACACTAATTGCCAATGCATAGTCGAAGCTATC
1 GCACACTAAGTGCCAATGCATAGTCGAAGCTATC
33078864 TCAAATATTT
Statistics
Matches: 72, Mismatches: 3, Indels: 3
0.92 0.04 0.04
Matches are distributed among these distances:
41 1 0.01
42 69 0.96
43 2 0.03
ACGTcount: A:0.30, C:0.30, G:0.19, T:0.22
Consensus pattern (41 bp):
GCACACTAAGTGCCAATGCATAGTCGAAGCTATCCGATCTC
Found at i:33078845 original size:84 final size:84
Alignment explanation
Indices: 33078699--33078863 Score: 233
Period size: 84 Copynumber: 2.0 Consensus size: 84
33078689 TTACTCGGGA
* * *
33078699 ATCTAGCACACTAAGTGCCAATACGTAGCTGAAGCTAACGCAATAATGCACACTAAGTGCCAATG
1 ATCTAGCACACTAAGTGCCAATACATAGCCGAAGCTAACCCAATAATGCACACTAAGTGCCAATG
33078764 CATAGTCGAAGCTATCCTG
66 CATAGTCGAAGCTATCCTG
* * * * * *
33078783 ATCTCGCACACTAAGTGCCAATGCATAGCCGAAGCTATCCCGAT-CTCGCACACTAATTGCCAAT
1 ATCTAGCACACTAAGTGCCAATACATAGCCGAAGCTAACCCAATAAT-GCACACTAAGTGCCAAT
33078847 GCATAGTCGAAGCTATC
65 GCATAGTCGAAGCTATC
33078864 TCAAATATTT
Statistics
Matches: 71, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
83 1 0.01
84 70 0.99
ACGTcount: A:0.32, C:0.28, G:0.18, T:0.22
Consensus pattern (84 bp):
ATCTAGCACACTAAGTGCCAATACATAGCCGAAGCTAACCCAATAATGCACACTAAGTGCCAATG
CATAGTCGAAGCTATCCTG
Found at i:33083012 original size:18 final size:18
Alignment explanation
Indices: 33082989--33083025 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
33082979 TATGTTTCAA
* *
33082989 TTGAATGTTGTATTTGTT
1 TTGAATGTGGTATATGTT
33083007 TTGAATGTGGTATATGTT
1 TTGAATGTGGTATATGTT
33083025 T
1 T
33083026 ATGATATTTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.19, C:0.00, G:0.24, T:0.57
Consensus pattern (18 bp):
TTGAATGTGGTATATGTT
Found at i:33084402 original size:29 final size:29
Alignment explanation
Indices: 33084353--33084423 Score: 124
Period size: 29 Copynumber: 2.4 Consensus size: 29
33084343 CACATGGGTA
*
33084353 GACACACGGGCGTATGTCTTGACCGTGTGT
1 GACACAC-GGCTTATGTCTTGACCGTGTGT
33084383 GACACACGGCTTATGTCTTGACCGTGTGT
1 GACACACGGCTTATGTCTTGACCGTGTGT
33084412 GACACACGGCTT
1 GACACACGGCTT
33084424 GGCACATGGG
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
29 33 0.82
30 7 0.17
ACGTcount: A:0.18, C:0.25, G:0.30, T:0.27
Consensus pattern (29 bp):
GACACACGGCTTATGTCTTGACCGTGTGT
Found at i:33086403 original size:23 final size:23
Alignment explanation
Indices: 33086330--33086403 Score: 80
Period size: 23 Copynumber: 3.3 Consensus size: 23
33086320 AAACTGAGTT
33086330 TATTTGATTATTCAAATAAAATA
1 TATTTGATTATTCAAATAAAATA
* ***
33086353 TATTTGGTT-TTCTCTTAGAAA-A
1 TATTTGATTATTCAAATA-AAATA
*
33086375 TATTTGATTATTCGAATAAAATA
1 TATTTGATTATTCAAATAAAATA
33086398 TATTTG
1 TATTTG
33086404 GATCGAACCA
Statistics
Matches: 40, Mismatches: 8, Indels: 6
0.74 0.15 0.11
Matches are distributed among these distances:
22 17 0.43
23 23 0.57
ACGTcount: A:0.38, C:0.05, G:0.09, T:0.47
Consensus pattern (23 bp):
TATTTGATTATTCAAATAAAATA
Found at i:33090435 original size:45 final size:45
Alignment explanation
Indices: 33090371--33090628 Score: 318
Period size: 45 Copynumber: 5.9 Consensus size: 45
33090361 CGTACAGTAA
** *
33090371 TATTCGGGCCTTTGAGCCTAGCAGGCTATGATGCCGGTGAGATAC
1 TATTCGGGCCTTTGAGCCTAGCAGGCTACAATGCCGGTGAAATAC
33090416 TATTCGGGCCTTTGAGCCTAGCAGGCTACAATGCCGGTGAAATAC
1 TATTCGGGCCTTTGAGCCTAGCAGGCTACAATGCCGGTGAAATAC
*
33090461 TATTCAGGCCTTTGAGCCTAGCAGGCTACAATGCCGGTGAAATAC
1 TATTCGGGCCTTTGAGCCTAGCAGGCTACAATGCCGGTGAAATAC
*
33090506 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAATGA-
1 TATTCGGGCCTTTGAGCCTAGCAGGCTACAATGCCGGTGAAAT-AC
* * * * *
33090551 TA-TC-GGACTTCGAGCCTAGCAGGCGA-AATGCCAGTG-GATGA-
1 TATTCGGGCCTTTGAGCCTAGCAGGCTACAATGCCGGTGAAAT-AC
** *
33090592 -ATTCGGG-CTTAAAACCTAGCAGGCTA-AATGCCGGTGA
1 TATTCGGGCCTTTGAGCCTAGCAGGCTACAATGCCGGTGA
33090629 TTTGATAAAA
Statistics
Matches: 193, Mismatches: 16, Indels: 11
0.88 0.07 0.05
Matches are distributed among these distances:
40 1 0.01
41 30 0.16
42 11 0.06
43 19 0.10
44 2 0.01
45 129 0.67
46 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.24
Consensus pattern (45 bp):
TATTCGGGCCTTTGAGCCTAGCAGGCTACAATGCCGGTGAAATAC
Found at i:33101707 original size:37 final size:38
Alignment explanation
Indices: 33101606--33101709 Score: 185
Period size: 37 Copynumber: 2.8 Consensus size: 38
33101596 CGAATAGTCC
*
33101606 CCACACGTAGTTATCGGGTCTTACCC-GAACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGAACAAAATCT
33101643 CCACACGTAGTCATCGGGTCTTACCCGGAA-AAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGAACAAAATCT
33101680 CCACACGTAGTCATCGGGTCTTACCCGGAA
1 CCACACGTAGTCATCGGGTCTTACCCGGAA
33101710 TACATTTCCA
Statistics
Matches: 65, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
37 62 0.95
38 3 0.05
ACGTcount: A:0.28, C:0.31, G:0.19, T:0.22
Consensus pattern (38 bp):
CCACACGTAGTCATCGGGTCTTACCCGGAACAAAATCT
Found at i:33101828 original size:48 final size:48
Alignment explanation
Indices: 33101757--33102269 Score: 846
Period size: 48 Copynumber: 10.7 Consensus size: 48
33101747 ACAACATTCG
*
33101757 CATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATTTCA
1 CATTAGCCATTCGGCTTTACCACATATACATATCTCACATATATTTCA
* * *
33101805 CATTAGCCATTCGGCTTTCCCACATATACATATCTCATACATATTTCA
1 CATTAGCCATTCGGCTTTACCACATATACATATCTCACATATATTTCA
* * *
33101853 CATTCGCCTTTCGGCTTTACCACATATACATATCACACATATATTTCA
1 CATTAGCCATTCGGCTTTACCACATATACATATCTCACATATATTTCA
* *
33101901 CATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
1 CATTAGCCATTCGGCTTTACCACATATACATATCTCACATATATTTCA
* *
33101949 CATTCGCCATTCGGCTTTACCACATATACATATCTCATATATATTTCA
1 CATTAGCCATTCGGCTTTACCACATATACATATCTCACATATATTTCA
*
33101997 CATTAGCCATTCGGCTTTACCACATATACATATCACACATATATTTCA
1 CATTAGCCATTCGGCTTTACCACATATACATATCTCACATATATTTCA
33102045 CATTAGCCATTCGGCTTTACCACATATACATATCTCACATATATTTCA
1 CATTAGCCATTCGGCTTTACCACATATACATATCTCACATATATTTCA
*
33102093 CATTAGCCATTCGGCTTTACCACATATACATATCACACATATATTTCA
1 CATTAGCCATTCGGCTTTACCACATATACATATCTCACATATATTTCA
*
33102141 CATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATTTCA
1 CATTAGCCATTCGGCTTTACCACATATACATATCTCACATATATTTCA
* * *
33102189 CATTCGCCATTCGGCTTTACCACATACACATATCACACATATATTTCA
1 CATTAGCCATTCGGCTTTACCACATATACATATCTCACATATATTTCA
* * *
33102237 CATTAGCCATTCGGCTTCACCACACATATATAT
1 CATTAGCCATTCGGCTTTACCACATATACATAT
33102270 ATTTATCTTG
Statistics
Matches: 434, Mismatches: 31, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
48 434 1.00
ACGTcount: A:0.31, C:0.28, G:0.06, T:0.35
Consensus pattern (48 bp):
CATTAGCCATTCGGCTTTACCACATATACATATCTCACATATATTTCA
Found at i:33105357 original size:40 final size:40
Alignment explanation
Indices: 33105311--33105591 Score: 382
Period size: 40 Copynumber: 7.0 Consensus size: 40
33105301 CCGAATACAC
* * * *
33105311 ATCACCAGCATGATTGCTCTTCGGGACCTAGCCCGGATAT
1 ATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
* * * ** *
33105351 AACACCAGCACGAATGCTCTTTGGGGTTTAGCACGGATAT
1 ATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
* * *
33105391 ATCACTAGCACGAATGCTCTTCAGAACTTAGCCCAGATAT
1 ATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
33105431 ATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
1 ATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
* *
33105471 ATCACTAGCATGAATGCTCTTCGGAACTTAGCCCGGATAT
1 ATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
* **
33105511 ATCACTAGCACGAATGCTCTTCGGAACAAAGCCCGGATAT
1 ATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
* *
33105551 ATCACTAGCACGAATGCTCTTCAGGACTTAGCCCGGCTAT
1 ATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
33105591 A
1 A
33105592 CAATTCTCAA
Statistics
Matches: 211, Mismatches: 30, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 211 1.00
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
ATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
Found at i:33107714 original size:48 final size:48
Alignment explanation
Indices: 33107643--33108245 Score: 938
Period size: 48 Copynumber: 12.8 Consensus size: 48
33107633 TGTTACAACA
*
33107643 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
*
33107691 TTCACATTCGCCATTCGGCTTTACCACATATACATATCTCATATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
* *
33107739 TTCACATTCGCCA--------T--CACATATACATATCTCATACATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
* * *
33107777 TTCACATTCGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
*
33107825 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
* * *
33107873 TTCACATTCGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
33107921 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
* *
33107969 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
33108017 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
* *
33108065 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
33108113 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
* * * *
33108161 TTCACATTCGCCATTCGGCTTTACCACATACACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
* * *
33108209 TTCACATTAGCCATTCGGCTTCACCACACATATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATAT
33108246 ATTTATCTTG
Statistics
Matches: 511, Mismatches: 34, Indels: 20
0.90 0.06 0.04
Matches are distributed among these distances:
38 36 0.07
40 1 0.00
46 1 0.00
48 473 0.93
ACGTcount: A:0.32, C:0.28, G:0.06, T:0.35
Consensus pattern (48 bp):
TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
Found at i:33107760 original size:38 final size:38
Alignment explanation
Indices: 33107715--33107790 Score: 143
Period size: 38 Copynumber: 2.0 Consensus size: 38
33107705 TCGGCTTTAC
*
33107715 CACATATACATATCTCATATATATTTCACATTCGCCAT
1 CACATATACATATCTCATACATATTTCACATTCGCCAT
33107753 CACATATACATATCTCATACATATTTCACATTCGCCAT
1 CACATATACATATCTCATACATATTTCACATTCGCCAT
33107791 TCGGCTTTAC
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.34, C:0.28, G:0.03, T:0.36
Consensus pattern (38 bp):
CACATATACATATCTCATACATATTTCACATTCGCCAT
Found at i:33111465 original size:45 final size:45
Alignment explanation
Indices: 33111401--33111604 Score: 288
Period size: 45 Copynumber: 4.6 Consensus size: 45
33111391 CGTACAGTAA
* ** *
33111401 TATTCGGGCCTTTAAGCCTAGCAGGCTATGATGCCGGTGAGATAC
1 TATTCGGGCCTTTGAGCCTAGCAGGCTACAATGCCGGTGAAATAC
*
33111446 TATTCGGGCCTTTGAGCCTAGCAGGCTACAATACCGGTGAAATAC
1 TATTCGGGCCTTTGAGCCTAGCAGGCTACAATGCCGGTGAAATAC
*
33111491 TATTCGGGCCTTTGAGCCTATCAGGCTACAATGCCGGTGAAATAC
1 TATTCGGGCCTTTGAGCCTAGCAGGCTACAATGCCGGTGAAATAC
* *
33111536 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGATGAAATGA-
1 TATTCGGGCCTTTGAGCCTAGCAGGCTACAATGCCGGTGAAAT-AC
* *
33111581 TA-TCGGG-CTTCGAGCTTAGCAGGC
1 TATTCGGGCCTTTGAGCCTAGCAGGC
33111605 GAAATGTCGG
Statistics
Matches: 146, Mismatches: 12, Indels: 4
0.90 0.07 0.02
Matches are distributed among these distances:
43 15 0.10
44 5 0.03
45 125 0.86
46 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (45 bp):
TATTCGGGCCTTTGAGCCTAGCAGGCTACAATGCCGGTGAAATAC
Found at i:33116301 original size:17 final size:19
Alignment explanation
Indices: 33116259--33116302 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
33116249 ACGAAATTTT
*
33116259 AATTAGTATTATGAGATAA
1 AATTATTATTATGAGATAA
*
33116278 AATTATTATTATTAGA-AA
1 AATTATTATTATGAGATAA
33116296 AA-TATTA
1 AATTATTA
33116303 CTGTATGTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 5 0.22
18 4 0.17
19 14 0.61
ACGTcount: A:0.50, C:0.00, G:0.09, T:0.41
Consensus pattern (19 bp):
AATTATTATTATGAGATAA
Found at i:33129098 original size:46 final size:46
Alignment explanation
Indices: 33129031--33129208 Score: 187
Period size: 46 Copynumber: 3.8 Consensus size: 46
33129021 TGTAACCAGC
* *
33129031 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGGTGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGTTCGCAT
* * * * *
33129077 CCATAAGTTAACTCGGACTCAACTCAATGAGCTCGGATGCCTAG-TT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATG-TTCGCAT
* *** * * **
33129123 ACATCTCTCGAACTCGGACTCAACTCAATGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGATGTTCGCAT
*
33129170 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATG
33129209 CCCAAATATC
Statistics
Matches: 104, Mismatches: 25, Indels: 6
0.77 0.19 0.04
Matches are distributed among these distances:
46 70 0.67
47 34 0.33
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.24
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGTTCGCAT
Found at i:33129167 original size:93 final size:93
Alignment explanation
Indices: 33129039--33129210 Score: 263
Period size: 93 Copynumber: 1.8 Consensus size: 93
33129029 GCCCATAAGT
*** *
33129039 GAACTCAGACTCAACTCAACGAGCTCGGGTGTTCGCATCCATAAGTTAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
33129104 TGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
* * *
33129132 GAACTCGGACTCAACTCAATGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
33129197 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
33129211 CAAATATCCT
Statistics
Matches: 70, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.23
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:33131639 original size:15 final size:14
Alignment explanation
Indices: 33131591--33131653 Score: 63
Period size: 15 Copynumber: 4.3 Consensus size: 14
33131581 CAAAGATAAT
*
33131591 AAGAAAACCGAATA
1 AAGAAATCCGAATA
*
33131605 AAGAAATCCAAGATA
1 AAGAAATCCGA-ATA
* *
33131620 GAGAAACCCTGAATA
1 AAGAAATCC-GAATA
33131635 AAGAAATCCAGAATA
1 AAGAAATCC-GAATA
33131650 AAGA
1 AAGA
33131654 GATCAAGGAT
Statistics
Matches: 39, Mismatches: 8, Indels: 3
0.78 0.16 0.06
Matches are distributed among these distances:
14 9 0.23
15 29 0.74
16 1 0.03
ACGTcount: A:0.59, C:0.14, G:0.16, T:0.11
Consensus pattern (14 bp):
AAGAAATCCGAATA
Found at i:33131665 original size:15 final size:15
Alignment explanation
Indices: 33131600--33131670 Score: 63
Period size: 15 Copynumber: 4.7 Consensus size: 15
33131590 TAAGAAAACC
33131600 GAATAAAGAAATCCAA
1 GAATAAAGAAAT-CAA
* * **
33131616 G-ATAGAGAAACCCT
1 GAATAAAGAAATCAA
*
33131630 GAATAAAGAAATCCA
1 GAATAAAGAAATCAA
*
33131645 GAATAAAGAGATCAA
1 GAATAAAGAAATCAA
*
33131660 GGATAAAGAAA
1 GAATAAAGAAA
33131671 CCCAAGATAC
Statistics
Matches: 43, Mismatches: 11, Indels: 3
0.75 0.19 0.05
Matches are distributed among these distances:
14 2 0.05
15 40 0.93
16 1 0.02
ACGTcount: A:0.58, C:0.11, G:0.18, T:0.13
Consensus pattern (15 bp):
GAATAAAGAAATCAA
Found at i:33131679 original size:15 final size:15
Alignment explanation
Indices: 33131602--33131679 Score: 54
Period size: 15 Copynumber: 5.2 Consensus size: 15
33131592 AGAAAACCGA
*
33131602 ATAAAGAAATCCAAG
1 ATAAAGAAACCCAAG
* *
33131617 ATAGAGAAACCC-TG
1 ATAAAGAAACCCAAG
*
33131631 AATAAAGAAATCC-AG
1 -ATAAAGAAACCCAAG
* *
33131646 AATAAAGAGA-TCAAGG
1 -ATAAAGAAACCCAA-G
33131662 ATAAAGAAACCCAAG
1 ATAAAGAAACCCAAG
33131677 ATA
1 ATA
33131680 CGATATTATG
Statistics
Matches: 49, Mismatches: 10, Indels: 8
0.73 0.15 0.12
Matches are distributed among these distances:
14 2 0.04
15 43 0.88
16 4 0.08
ACGTcount: A:0.56, C:0.14, G:0.17, T:0.13
Consensus pattern (15 bp):
ATAAAGAAACCCAAG
Found at i:33133416 original size:27 final size:27
Alignment explanation
Indices: 33133359--33133438 Score: 106
Period size: 27 Copynumber: 2.9 Consensus size: 27
33133349 GTGACAGAGT
* *
33133359 CACCAGATACAGATATTTTGTAGCAGTGC
1 CACCAGA-ACAGATA-TTTGTGGCAGGGC
*
33133388 CACCAGAACAGATATATGTGGCAGGGC
1 CACCAGAACAGATATTTGTGGCAGGGC
33133415 CACCAGAACAGATAATTTGTGGCA
1 CACCAGAACAGAT-ATTTGTGGCA
33133439 TAACAACCAG
Statistics
Matches: 46, Mismatches: 4, Indels: 3
0.87 0.08 0.06
Matches are distributed among these distances:
27 23 0.50
28 16 0.35
29 7 0.15
ACGTcount: A:0.34, C:0.21, G:0.24, T:0.21
Consensus pattern (27 bp):
CACCAGAACAGATATTTGTGGCAGGGC
Found at i:33133447 original size:28 final size:27
Alignment explanation
Indices: 33133389--33133448 Score: 66
Period size: 28 Copynumber: 2.2 Consensus size: 27
33133379 TAGCAGTGCC
** *
33133389 ACCAGAACAGATATATGTGGCAGGGCC
1 ACCAGAACAGATATATGTGGCAGAACA
* *
33133416 ACCAGAACAGATAATTTGTGGCATAACA
1 ACCAGAACAGAT-ATATGTGGCAGAACA
33133444 ACCAG
1 ACCAG
33133449 GACGCTTCCT
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
27 12 0.44
28 15 0.56
ACGTcount: A:0.38, C:0.22, G:0.23, T:0.17
Consensus pattern (27 bp):
ACCAGAACAGATATATGTGGCAGAACA
Found at i:33138633 original size:24 final size:24
Alignment explanation
Indices: 33138606--33138672 Score: 116
Period size: 24 Copynumber: 2.8 Consensus size: 24
33138596 GCTAGAAATA
*
33138606 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTCAC
*
33138630 TATGGCACTATGTGTGCGATTCGC
1 TATGGCACTATGTGTGCGATTCAC
33138654 TATGGCACTATGTGTGCGA
1 TATGGCACTATGTGTGCGA
33138673 ACATAATAAG
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 41 1.00
ACGTcount: A:0.19, C:0.18, G:0.28, T:0.34
Consensus pattern (24 bp):
TATGGCACTATGTGTGCGATTCAC
Found at i:33149907 original size:39 final size:39
Alignment explanation
Indices: 33149823--33149975 Score: 225
Period size: 39 Copynumber: 3.9 Consensus size: 39
33149813 TATGGTAACC
** * *
33149823 CGCACAAAGGCCTTCGGGACTTAACCCGGATATCACAATT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
33149863 TGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
33149902 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
33149941 TGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
33149976 TCGAACATTC
Statistics
Matches: 103, Mismatches: 10, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 88 0.85
40 15 0.15
ACGTcount: A:0.24, C:0.30, G:0.21, T:0.25
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:33149948 original size:78 final size:79
Alignment explanation
Indices: 33149792--33149974 Score: 278
Period size: 78 Copynumber: 2.3 Consensus size: 79
33149782 TCATTCAAAC
* * **
33149792 GCCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATC
1 GCCTTCGGG-CTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATC
33149857 ACAATTTGCACAATT
65 ACAATTTGCACAATT
* ** *
33149872 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTGCCTTCGGG-CTTAGCCCGGATATCA
1 GCCTTCGGGCTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATCA
33149936 CAATTTGCACAATT
66 CAATTTGCACAATT
33149950 GCCTTCGGGCTTAGCCCGGATATCA
1 GCCTTCGGGCTTAGCCCGGATATCA
33149975 CTCGAACATT
Statistics
Matches: 95, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
78 54 0.57
79 32 0.34
80 9 0.09
ACGTcount: A:0.23, C:0.30, G:0.22, T:0.25
Consensus pattern (79 bp):
GCCTTCGGGCTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATCA
CAATTTGCACAATT
Found at i:33152818 original size:49 final size:49
Alignment explanation
Indices: 33152746--33152977 Score: 277
Period size: 49 Copynumber: 4.7 Consensus size: 49
33152736 CTGGTATGCA
* * *
33152746 TAGTAGCCCGCACTTAGTACTACACATGTGACCAATTATCCAGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACG
* ** *
33152795 TAGTAGCTTGCACTTAGTACTACACACGTGACCTAACCA-CCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC-AATTATCC-GGTACACG
* * * * *
33152845 TAGTAGCCTGAACTTAGTACTACACACGTGATCGAAGTTATCGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-TTATCCGGTACACG
* *
33152896 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACG
* *
33152945 TAGTATCCTACACTTAGTACTACACACGTGACC
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC
33152978 TCACAATAGA
Statistics
Matches: 151, Mismatches: 27, Indels: 10
0.80 0.14 0.05
Matches are distributed among these distances:
49 72 0.48
50 43 0.28
51 35 0.23
52 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.18, T:0.25
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACG
Found at i:33152919 original size:101 final size:98
Alignment explanation
Indices: 33152746--33152977 Score: 270
Period size: 101 Copynumber: 2.3 Consensus size: 98
33152736 CTGGTATGCA
* * * * *
33152746 TAGTAGCCCGCACTTAGTACTACACATGTGACCAATTATCCAGTACACGTAGTAGCTTGCACTTA
1 TAGTAGCCTGAACTTAGTACTACACACGTGACCAATTATCCAGTACACATAGTAGCCTGCACTTA
*
33152811 GTACTACACACGTGACCTAACCA-CCTGATACACG
66 GTACTACACACGCGACC-AACCATCC-GATACACG
* ** *
33152845 TAGTAGCCTGAACTTAGTACTACACACGTGATCGAAGTTATCGGGTACGCATAGTAGCCTGCACT
1 TAGTAGCCTGAACTTAGTACTACACACGTGA-CCAA-TTATCCAGTACACATAGTAGCCTGCACT
* ** *
33152910 TAGTACTACACATGCGACCAATTATCCGGTACACG
64 TAGTACTACACACGCGACCAACCATCCGATACACG
*
33152945 TAGTATCCT-ACACTTAGTACTACACACGTGACC
1 TAGTAGCCTGA-ACTTAGTACTACACACGTGACC
33152978 TCACAATAGA
Statistics
Matches: 113, Mismatches: 16, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
99 30 0.27
100 41 0.36
101 42 0.37
ACGTcount: A:0.30, C:0.28, G:0.18, T:0.25
Consensus pattern (98 bp):
TAGTAGCCTGAACTTAGTACTACACACGTGACCAATTATCCAGTACACATAGTAGCCTGCACTTA
GTACTACACACGCGACCAACCATCCGATACACG
Found at i:33158233 original size:47 final size:47
Alignment explanation
Indices: 33158180--33158303 Score: 221
Period size: 47 Copynumber: 2.6 Consensus size: 47
33158170 TTTAGGATTT
*
33158180 AATGTGATGAATGTGAACATGCACATATGTGATAAGGCCGAATGGCC
1 AATGTGATGAATGTGAACATGCACATATGTGATAAGGCCGAATGCCC
* *
33158227 AATGTGACGAATGTGAACATCCACATATGTGATAAGGCCGAATGCCC
1 AATGTGATGAATGTGAACATGCACATATGTGATAAGGCCGAATGCCC
33158274 AATGTGATGAATGTGAACATGCACATATGT
1 AATGTGATGAATGTGAACATGCACATATGT
33158304 ATGTGAACAT
Statistics
Matches: 72, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 72 1.00
ACGTcount: A:0.35, C:0.16, G:0.25, T:0.24
Consensus pattern (47 bp):
AATGTGATGAATGTGAACATGCACATATGTGATAAGGCCGAATGCCC
Found at i:33158309 original size:20 final size:20
Alignment explanation
Indices: 33158284--33158323 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
33158274 AATGTGATGA
33158284 ATGTGAACATGCACATATGT
1 ATGTGAACATGCACATATGT
33158304 ATGTGAACATGCACATATGT
1 ATGTGAACATGCACATATGT
33158324 GATAAGGCCG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.35, C:0.15, G:0.20, T:0.30
Consensus pattern (20 bp):
ATGTGAACATGCACATATGT
Found at i:33158319 original size:67 final size:67
Alignment explanation
Indices: 33158237--33158370 Score: 241
Period size: 67 Copynumber: 2.0 Consensus size: 67
33158227 AATGTGACGA
*
33158237 ATGTGAACATCCACATATGTGATAAGGCCGAATGCCCAATGTGATGAATGTGAACATGCACATAT
1 ATGTGAACATCCACATATGTGATAAGGCCGAATGCCCAATGTGATAAATGTGAACATGCACATAT
33158302 GT
66 GT
* *
33158304 ATGTGAACATGCACATATGTGATAAGGCCGAATGGCCAATGTGATAAATGTGAACATGCACATAT
1 ATGTGAACATCCACATATGTGATAAGGCCGAATGCCCAATGTGATAAATGTGAACATGCACATAT
33158369 GT
66 GT
33158371 GATAAGGCCG
Statistics
Matches: 64, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
67 64 1.00
ACGTcount: A:0.35, C:0.16, G:0.23, T:0.25
Consensus pattern (67 bp):
ATGTGAACATCCACATATGTGATAAGGCCGAATGCCCAATGTGATAAATGTGAACATGCACATAT
GT
Found at i:33158360 original size:47 final size:47
Alignment explanation
Indices: 33158304--33158626 Score: 504
Period size: 47 Copynumber: 6.9 Consensus size: 47
33158294 GCACATATGT
*
33158304 ATGTGAACATGCACATATGTGATAAGGCCGAATGGCCAATGTGATAA
1 ATGTGAACATGCACATATGTGATAAGGCCGAATGGCCAATGTGATGA
33158351 ATGTGAACATGCACATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAACATGCACATATGTGATAAGGCCGAATGGCCAATGTGATGA
*
33158398 ATGTGAACATGCACATATGTGATAAGGCCGAATGGACAATGTGATGA
1 ATGTGAACATGCACATATGTGATAAGGCCGAATGGCCAATGTGATGA
*
33158445 ATGTGAACATGCACATATGTGATAAGGCCGAATGGCCAATGTGATAA
1 ATGTGAACATGCACATATGTGATAAGGCCGAATGGCCAATGTGATGA
* *
33158492 ATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAACATGCACATATGTGATAAGGCCGAATGGCCAATGTGATGA
* *
33158539 ATGTGAACATGCACATATGCGATAAGGCCAAATGGCCAATGTGATGA
1 ATGTGAACATGCACATATGTGATAAGGCCGAATGGCCAATGTGATGA
* * * * * * *
33158586 ACGTGGAA-GTGTATATATGTGGTAAAGCCGAATGGCTAATG
1 ATGT-GAACATGCACATATGTGATAAGGCCGAATGGCCAATG
33158627 CGAAATGCGT
Statistics
Matches: 255, Mismatches: 20, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
47 252 0.99
48 3 0.01
ACGTcount: A:0.35, C:0.14, G:0.28, T:0.24
Consensus pattern (47 bp):
ATGTGAACATGCACATATGTGATAAGGCCGAATGGCCAATGTGATGA
Found at i:33158390 original size:114 final size:114
Alignment explanation
Indices: 33158190--33158417 Score: 420
Period size: 114 Copynumber: 2.0 Consensus size: 114
33158180 AATGTGATGA
*
33158190 ATGTGAACATGCACATATGTGATAAGGCCGAATGGCCAATGTGACGAATGTGAACATCCACATAT
1 ATGTGAACATGCACATATGTGATAAGGCCGAATGGCCAATGTGACAAATGTGAACATCCACATAT
33158255 GTGATAAGGCCGAATGCCCAATGTGATGAATGTGAACATGCACATATGT
66 GTGATAAGGCCGAATGCCCAATGTGATGAATGTGAACATGCACATATGT
* *
33158304 ATGTGAACATGCACATATGTGATAAGGCCGAATGGCCAATGTGATAAATGTGAACATGCACATAT
1 ATGTGAACATGCACATATGTGATAAGGCCGAATGGCCAATGTGACAAATGTGAACATCCACATAT
*
33158369 GTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCACATATGT
66 GTGATAAGGCCGAATGCCCAATGTGATGAATGTGAACATGCACATATGT
33158418 GATAAGGCCG
Statistics
Matches: 110, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
114 110 1.00
ACGTcount: A:0.35, C:0.16, G:0.25, T:0.24
Consensus pattern (114 bp):
ATGTGAACATGCACATATGTGATAAGGCCGAATGGCCAATGTGACAAATGTGAACATCCACATAT
GTGATAAGGCCGAATGCCCAATGTGATGAATGTGAACATGCACATATGT
Found at i:33158652 original size:46 final size:46
Alignment explanation
Indices: 33158600--33158690 Score: 137
Period size: 46 Copynumber: 2.0 Consensus size: 46
33158590 GGAAGTGTAT
* *
33158600 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGCGTATGAGATGG
1 ATATGTGGTAAAGCCAAATGGCTAATGCGAAATACGTATGAGATGG
* * *
33158646 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTATGAGATG
1 ATATGTGGTAAAGCCAAATGGCTAATGCGAAATACGTATGAGATG
33158691 TGTATATATA
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 40 1.00
ACGTcount: A:0.34, C:0.09, G:0.31, T:0.26
Consensus pattern (46 bp):
ATATGTGGTAAAGCCAAATGGCTAATGCGAAATACGTATGAGATGG
Found at i:33160352 original size:29 final size:29
Alignment explanation
Indices: 33160312--33160391 Score: 108
Period size: 29 Copynumber: 2.7 Consensus size: 29
33160302 CTTAATAATC
33160312 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGTA-TTTCA
**
33160342 AACTTGCACACTTAGTGCCATGTATTTCA
1 AACCCGCACACTTAGTGCCATGTATTTCA
*
33160371 AGCCCGCACACTTAGTGCCAT
1 AACCCGCACACTTAGTGCCAT
33160392 TCTCTCAACC
Statistics
Matches: 44, Mismatches: 5, Indels: 3
0.85 0.10 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.30, G:0.15, T:0.28
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGTATTTCA
Found at i:33162976 original size:35 final size:34
Alignment explanation
Indices: 33162887--33162997 Score: 141
Period size: 35 Copynumber: 3.2 Consensus size: 34
33162877 TACTCTTTGT
* *
33162887 TTGGTGTGTTTTAGTGGACTAGCTCTTTTGAGTA
1 TTGGTGTGTTTTGGTGGACTAGCTCTTTTGAGCA
* * *
33162921 TTGGTGTGTTTCGGAAGGACTAGCCCTTTTGAGCA
1 TTGGTGTGTTTTGG-TGGACTAGCTCTTTTGAGCA
*
33162956 TTGGTGTGTTTTGGTTGGACTAGCTCTTATGAGCA
1 TTGGTGTGTTTTGG-TGGACTAGCTCTTTTGAGCA
*
33162991 TGGGTGT
1 TTGGTGT
33162998 ATTCTAGAAG
Statistics
Matches: 65, Mismatches: 11, Indels: 1
0.84 0.14 0.01
Matches are distributed among these distances:
34 12 0.18
35 53 0.82
ACGTcount: A:0.14, C:0.12, G:0.32, T:0.41
Consensus pattern (34 bp):
TTGGTGTGTTTTGGTGGACTAGCTCTTTTGAGCA
Found at i:33163024 original size:70 final size:70
Alignment explanation
Indices: 33162887--33163043 Score: 167
Period size: 70 Copynumber: 2.2 Consensus size: 70
33162877 TACTCTTTGT
* * * * * *
33162887 TTGGTGTGTTTTAG-TGGACTAGCTCTTTTGAGTATTGGTGTGTTTCGGAAGGACTAGCCCTTTT
1 TTGGTGTGTTTTGGTTGGACTAGCTCTTATGAGCATTGGTGTGTTTCAGAAGGACTAGCCCGTGT
33162951 GAGCA
66 GAGCA
* * *
33162956 TTGGTGTGTTTTGGTTGGACTAGCTCTTATGAGCA-TGG-GTGTATTCTAGAAGGATTGGCTCGT
1 TTGGTGTGTTTTGGTTGGACTAGCTCTTATGAGCATTGGTGTGT-TTC-AGAAGGACTAGCCCGT
33163019 GTGAGCA
64 GTGAGCA
**
33163026 TCTATTGTGTTTTGGTTG
1 T-TGGTGTGTTTTGGTTG
33163044 AACTGGCAAT
Statistics
Matches: 73, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
68 4 0.05
69 19 0.26
70 36 0.49
71 14 0.19
ACGTcount: A:0.15, C:0.11, G:0.32, T:0.41
Consensus pattern (70 bp):
TTGGTGTGTTTTGGTTGGACTAGCTCTTATGAGCATTGGTGTGTTTCAGAAGGACTAGCCCGTGT
GAGCA
Found at i:33166668 original size:47 final size:45
Alignment explanation
Indices: 33166556--33166682 Score: 132
Period size: 47 Copynumber: 2.7 Consensus size: 45
33166546 TCATTTGTGT
**
33166556 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGA
1 GAGCCAGTGTAAGACATGTCTCAGACATGCATCGG-CACATTATGA
33166602 GAGCCAGTGTAAGACCATGTCTCAGACATGGCATC-G-ACATTGAGATGA
1 GAGCCAGTGTAAGA-CATGTCTCAGACAT-GCATCGGCACATT---ATGA
* * * *
33166650 GTGCTAGTGTAAGACATGTCTAAAACATGCATC
1 GAGCCAGTGTAAGACATGTCTCAGACATGCATC
33166683 AGCCTCGGGA
Statistics
Matches: 70, Mismatches: 6, Indels: 10
0.81 0.07 0.12
Matches are distributed among these distances:
45 5 0.07
46 19 0.27
47 25 0.36
48 21 0.30
ACGTcount: A:0.31, C:0.20, G:0.26, T:0.23
Consensus pattern (45 bp):
GAGCCAGTGTAAGACATGTCTCAGACATGCATCGGCACATTATGA
Found at i:33166807 original size:50 final size:49
Alignment explanation
Indices: 33166556--33166874 Score: 211
Period size: 46 Copynumber: 6.7 Consensus size: 49
33166546 TCATTTGTGT
** **
33166556 GAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCAC-ATTATGA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCGTCGAAGATGA
** * * *
33166602 GAGCCAGTGTAAGACCATGTCTCAGACATGGCATCGACATTG-AGATGA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCGTCGAAGATGA
* * *** * * * *
33166650 GTGCTAGTGTAAGA-CATGTCTAAAACAT-GCATCAGCCTCG-GGACGTA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCGTCGAAGATG-A
* * ** *
33166697 -AGCCAGTATAATA-GGTGTCTGGGACAT-GCATCAGC-TACG-AGAT--
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCGT-CGAAGATGA
* * *
33166740 GTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCAAGGT-TATG-TGA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC---GTCGAAGATGA
* * *
33166790 GAGCTAGTGTAAGACCATGCCTGGGACATGGCATCAGCGTCGAAGATGA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCGTCGAAGATGA
*
33166839 TAGCCAGTGTAAGACCATGTCTGGGACATGGCATCG
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCG
33166875 ACACTTTACC
Statistics
Matches: 209, Mismatches: 47, Indels: 31
0.73 0.16 0.11
Matches are distributed among these distances:
44 10 0.05
45 13 0.06
46 62 0.30
47 27 0.13
48 26 0.12
49 36 0.17
50 35 0.17
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.22
Consensus pattern (49 bp):
GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCGTCGAAGATGA
Found at i:33168012 original size:21 final size:20
Alignment explanation
Indices: 33167978--33168016 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
33167968 TCGAAATGGT
*
33167978 CACACGGGCATGTTACCCTTC
1 CACACGGACATGTT-CCCTTC
*
33167999 CACACGGACGTGTTCCCT
1 CACACGGACATGTTCCCT
33168017 ATTTTAAGGT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 4 0.25
21 12 0.75
ACGTcount: A:0.18, C:0.38, G:0.21, T:0.23
Consensus pattern (20 bp):
CACACGGACATGTTCCCTTC
Found at i:33173913 original size:21 final size:20
Alignment explanation
Indices: 33173875--33173919 Score: 54
Period size: 21 Copynumber: 2.2 Consensus size: 20
33173865 TTTTCCTAAG
33173875 ATGTGAATTGAATGAAATTGA
1 ATGTGAATTGAATGAAATT-A
** *
33173896 ATGTGAATTTTATTAAATTA
1 ATGTGAATTGAATGAAATTA
33173916 ATGT
1 ATGT
33173920 TAAATTAGTT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
20 5 0.24
21 16 0.76
ACGTcount: A:0.40, C:0.00, G:0.18, T:0.42
Consensus pattern (20 bp):
ATGTGAATTGAATGAAATTA
Found at i:33176991 original size:16 final size:16
Alignment explanation
Indices: 33176970--33177002 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
33176960 GTGTAACACC
33176970 CCAAAAATCCCGAAAT
1 CCAAAAATCCCGAAAT
33176986 CCAAAAATCCCGAAAT
1 CCAAAAATCCCGAAAT
33177002 C
1 C
33177003 TTGAATTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.48, C:0.33, G:0.06, T:0.12
Consensus pattern (16 bp):
CCAAAAATCCCGAAAT
Found at i:33178527 original size:29 final size:29
Alignment explanation
Indices: 33178485--33178601 Score: 107
Period size: 29 Copynumber: 4.1 Consensus size: 29
33178475 GTGAGCTTGA
*
33178485 ATAT-AAGGTGATTTGGGCCTAACGGGCC
1 ATATAAAGGTGATTTGGGCCTAATGGGCC
* *
33178513 ATATAAAGGTGATTTGGGACTAATAGGCC
1 ATATAAAGGTGATTTGGGCCTAATGGGCC
* ** * *
33178542 ATATGAATATGAATTGGGCCTGATGGGCC
1 ATATAAAGGTGATTTGGGCCTAATGGGCC
**
33178571 ATATAAA--TGAGATGGGCC-AAGTGGGCC
1 ATATAAAGGTGATTTGGGCCTAA-TGGGCC
33178598 ATAT
1 ATAT
33178602 GCATGTATGT
Statistics
Matches: 73, Mismatches: 14, Indels: 5
0.79 0.15 0.05
Matches are distributed among these distances:
26 1 0.01
27 19 0.26
28 4 0.05
29 49 0.67
ACGTcount: A:0.31, C:0.14, G:0.30, T:0.26
Consensus pattern (29 bp):
ATATAAAGGTGATTTGGGCCTAATGGGCC
Found at i:33178588 original size:27 final size:29
Alignment explanation
Indices: 33178538--33178602 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 29
33178528 GGGACTAATA
*
33178538 GGCCATATGAATATGAATTGGGCC-TGATG
1 GGCCATATGAATATGAATTGGGCCAAG-TG
33178567 GGCCATAT-AA-ATGAGA-TGGGCCAAGTG
1 GGCCATATGAATATGA-ATTGGGCCAAGTG
33178594 GGCCATATG
1 GGCCATATG
33178603 CATGTATGTA
Statistics
Matches: 32, Mismatches: 1, Indels: 7
0.80 0.03 0.17
Matches are distributed among these distances:
27 20 0.62
28 4 0.12
29 8 0.25
ACGTcount: A:0.29, C:0.15, G:0.32, T:0.23
Consensus pattern (29 bp):
GGCCATATGAATATGAATTGGGCCAAGTG
Found at i:33180043 original size:30 final size:30
Alignment explanation
Indices: 33180007--33180075 Score: 129
Period size: 30 Copynumber: 2.3 Consensus size: 30
33179997 CACATGGGTA
*
33180007 GACACACGGGCATGTGTCTAGGTCGTGTGT
1 GACACACGGGCATGTGTCTAGGCCGTGTGT
33180037 GACACACGGGCATGTGTCTAGGCCGTGTGT
1 GACACACGGGCATGTGTCTAGGCCGTGTGT
33180067 GACACACGG
1 GACACACGG
33180076 TTAGCCCTAT
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 38 1.00
ACGTcount: A:0.19, C:0.23, G:0.36, T:0.22
Consensus pattern (30 bp):
GACACACGGGCATGTGTCTAGGCCGTGTGT
Found at i:33180500 original size:21 final size:21
Alignment explanation
Indices: 33180475--33180529 Score: 101
Period size: 21 Copynumber: 2.6 Consensus size: 21
33180465 TCAAAATGGT
33180475 CACACGGGCGTGTTACCCTTC
1 CACACGGGCGTGTTACCCTTC
33180496 CACACGGGCGTGTTACCCTTC
1 CACACGGGCGTGTTACCCTTC
*
33180517 CACACAGGCGTGT
1 CACACGGGCGTGT
33180530 GCCCTATTTT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.16, C:0.36, G:0.25, T:0.22
Consensus pattern (21 bp):
CACACGGGCGTGTTACCCTTC
Found at i:33181937 original size:18 final size:19
Alignment explanation
Indices: 33181898--33181941 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 19
33181888 CAGGTTGAAG
33181898 ACACGGGTGTGTTCGAAGTC
1 ACACGGGTGTGTTC-AAGTC
33181918 ACACGGGTGTGTGT-AA-TC
1 ACACGGGTGTGT-TCAAGTC
33181936 ACACGG
1 ACACGG
33181942 TCTACCCACA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
18 8 0.35
19 2 0.09
20 12 0.52
21 1 0.04
ACGTcount: A:0.23, C:0.20, G:0.34, T:0.23
Consensus pattern (19 bp):
ACACGGGTGTGTTCAAGTC
Found at i:33182384 original size:21 final size:20
Alignment explanation
Indices: 33182346--33182390 Score: 54
Period size: 21 Copynumber: 2.2 Consensus size: 20
33182336 TTTTCCTAAG
33182346 ATGTGAATTGAATGAAATTGA
1 ATGTGAATTGAATGAAATT-A
** *
33182367 ATGTGAATTTTATTAAATTA
1 ATGTGAATTGAATGAAATTA
33182387 ATGT
1 ATGT
33182391 TAAATTTGTT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
20 5 0.24
21 16 0.76
ACGTcount: A:0.40, C:0.00, G:0.18, T:0.42
Consensus pattern (20 bp):
ATGTGAATTGAATGAAATTA
Found at i:33193341 original size:28 final size:28
Alignment explanation
Indices: 33193310--33193393 Score: 134
Period size: 28 Copynumber: 3.0 Consensus size: 28
33193300 GGGGTATATT
*
33193310 GGTAATTTTGCTATTTAAGGGTAATTTC
1 GGTAATTTTGCTCTTTAAGGGTAATTTC
*
33193338 GGTAATTTTGCTCTTTAGGGGTAATTTC
1 GGTAATTTTGCTCTTTAAGGGTAATTTC
*
33193366 AGTAATTTTGCTCTTT-AGGGTAATTTC
1 GGTAATTTTGCTCTTTAAGGGTAATTTC
33193393 G
1 G
33193394 TGATCTACGC
Statistics
Matches: 51, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
27 10 0.20
28 41 0.80
ACGTcount: A:0.21, C:0.10, G:0.23, T:0.46
Consensus pattern (28 bp):
GGTAATTTTGCTCTTTAAGGGTAATTTC
Found at i:33194059 original size:27 final size:27
Alignment explanation
Indices: 33194028--33194188 Score: 214
Period size: 27 Copynumber: 6.0 Consensus size: 27
33194018 TTCTACCCTA
*
33194028 CAAGGGTATTTCGGTAATTTTATAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
* * *
33194055 AAAGGGTATTTTAGTAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
* *
33194082 CAGGGGTATTTTGGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
* *
33194109 CAAGGGTATTTTAGTAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
* * *
33194136 TAGGGGTATTTTGGTGATTTTATAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
*
33194163 CAAGGGTATTTTGGTAATTCTATAAA
1 CAAGGGTATTTTGGTAATTTTATAAA
33194189 TTGAAGGTAA
Statistics
Matches: 112, Mismatches: 22, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 112 1.00
ACGTcount: A:0.33, C:0.08, G:0.20, T:0.39
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTATAAAC
Found at i:33194098 original size:54 final size:54
Alignment explanation
Indices: 33194031--33194181 Score: 248
Period size: 54 Copynumber: 2.8 Consensus size: 54
33194021 TACCCTACAA
* *
33194031 GGGTATTTCGGTAATTTTATAAACAAAGGGTATTTTAGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAACCAG
* *
33194085 GGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTAGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAACCAG
* *
33194139 GGGTATTTTGGTGATTTTATAAACCAAGGGTATTTTGGTAATT
1 GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATT
33194182 CTATAAATTG
Statistics
Matches: 90, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
54 90 1.00
ACGTcount: A:0.31, C:0.07, G:0.21, T:0.40
Consensus pattern (54 bp):
GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAACCAG
Found at i:33194207 original size:81 final size:81
Alignment explanation
Indices: 33194039--33194208 Score: 180
Period size: 81 Copynumber: 2.1 Consensus size: 81
33194029 AAGGGTATTT
* * * *
33194039 CGGTAATTTTATAAACAAAGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTG
1 CGGTAATTTTACAAACAAAGGGTATTTTAGTAATTTTACAAACCAAGGGTATTTTGGTAATTCTA
***
33194104 TAAACCAAGGGTATTT
66 TAAACCAAGGGTAAAA
** * * * * *
33194120 TAGTAATTTTACAAACTAGGGGTATTTTGGTGATTTTATAAACCAAGGGTATTTTGGTAATTCTA
1 CGGTAATTTTACAAACAAAGGGTATTTTAGTAATTTTACAAACCAAGGGTATTTTGGTAATTCTA
**
33194185 TAAATTGAA-GGTAAAA
66 TAAA-CCAAGGGTAAAA
33194201 CGGTAATT
1 CGGTAATT
33194209 CTGTAAACTG
Statistics
Matches: 70, Mismatches: 18, Indels: 2
0.78 0.20 0.02
Matches are distributed among these distances:
81 68 0.97
82 2 0.03
ACGTcount: A:0.34, C:0.08, G:0.20, T:0.38
Consensus pattern (81 bp):
CGGTAATTTTACAAACAAAGGGTATTTTAGTAATTTTACAAACCAAGGGTATTTTGGTAATTCTA
TAAACCAAGGGTAAAA
Found at i:33194276 original size:27 final size:27
Alignment explanation
Indices: 33194174--33194262 Score: 117
Period size: 27 Copynumber: 3.3 Consensus size: 27
33194164 AAGGGTATTT
* * *
33194174 TGGTAATTCTATAAATTGAAGGTAAAA
1 TGGTAATTCTGTAAATCGAGGGTAAAA
* *
33194201 CGGTAATTCTGTAAA-CTGAGGATAAAA
1 TGGTAATTCTGTAAATC-GAGGGTAAAA
33194228 TGGTAATTCTGTAAATCGAGGGTAAAA
1 TGGTAATTCTGTAAATCGAGGGTAAAA
33194255 TGGTAATT
1 TGGTAATT
33194263 TTACAAGTCG
Statistics
Matches: 53, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
27 52 0.98
28 1 0.02
ACGTcount: A:0.39, C:0.07, G:0.22, T:0.31
Consensus pattern (27 bp):
TGGTAATTCTGTAAATCGAGGGTAAAA
Found at i:33208799 original size:42 final size:42
Alignment explanation
Indices: 33208753--33208843 Score: 128
Period size: 42 Copynumber: 2.2 Consensus size: 42
33208743 GTGTCTCAAC
* * *
33208753 CGTGTGTGACACACTACCATGTGCACGGACGTGTGGTTTGGT
1 CGTGTGTGACACACGACCATGTGCACGAACGTGTGGTGTGGT
* * *
33208795 CGTGTGTGACACACGGCCATGTGTATGAACGTGTGGTGTGGT
1 CGTGTGTGACACACGACCATGTGCACGAACGTGTGGTGTGGT
33208837 CGTGTGT
1 CGTGTGT
33208844 CCCCAGCATC
Statistics
Matches: 43, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.15, C:0.19, G:0.36, T:0.30
Consensus pattern (42 bp):
CGTGTGTGACACACGACCATGTGCACGAACGTGTGGTGTGGT
Found at i:33229152 original size:49 final size:49
Alignment explanation
Indices: 33229094--33229617 Score: 888
Period size: 49 Copynumber: 10.9 Consensus size: 49
33229084 GTATGAGATG
*
33229094 TATATATGTGATACGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
33229143 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
* *
33229192 TATACATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAG--
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
*
33229239 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAG--
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
33229286 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
33229335 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
* *
33229384 TATACATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAG--
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
33229431 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
*
33229480 TATA-ATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAG--
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
* *
33229526 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTA
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
*
33229575 TATATATGTGATAAGGCCTAAT-GCCGATGTGATGAATGTGAAA
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
33229618 TATATGTGTG
Statistics
Matches: 454, Mismatches: 14, Indels: 15
0.94 0.03 0.03
Matches are distributed among these distances:
46 4 0.01
47 176 0.39
48 61 0.13
49 213 0.47
ACGTcount: A:0.35, C:0.09, G:0.27, T:0.29
Consensus pattern (49 bp):
TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
Found at i:33229420 original size:192 final size:192
Alignment explanation
Indices: 33229093--33229617 Score: 957
Period size: 192 Copynumber: 2.7 Consensus size: 192
33229083 TGTATGAGAT
*
33229093 GTATATATGTGATACGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAG
1 GTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAG
33229158 GCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATACATGTGATAAGGCCTAATGGCCAATGT
66 GCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATACATGTGATAAGGCCTAATGGCCAATGT
33229223 GATGAATGTGAAAGAGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGA
131 GATGAATGTGAAAGAGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGA
33229285 GTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAG
1 GTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAG
33229350 GCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATACATGTGATAAGGCCTAATGGCCAATGT
66 GCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATACATGTGATAAGGCCTAATGGCCAATGT
*
33229415 GATGAATGTGAAAGAGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGT
131 GATGAATGTGAAAGAGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGA
*
33229477 GTATATAATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAG--TATATATGTGATAA
1 GTATAT-ATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAA
* * * *
33229540 GGCCTAATGGCCGATGTGATGAATGTGAAGGTGTATATATATGTGATAAGGCCTAAT-GCCGATG
65 GGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATACATGTGATAAGGCCTAATGGCCAATG
33229604 TGATGAATGTGAAA
130 TGATGAATGTGAAA
33229618 TATATGTGTG
Statistics
Matches: 325, Mismatches: 7, Indels: 4
0.97 0.02 0.01
Matches are distributed among these distances:
190 20 0.06
191 68 0.21
192 196 0.60
193 41 0.13
ACGTcount: A:0.35, C:0.09, G:0.27, T:0.29
Consensus pattern (192 bp):
GTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAG
GCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATACATGTGATAAGGCCTAATGGCCAATGT
GATGAATGTGAAAGAGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGA
Found at i:33229661 original size:48 final size:48
Alignment explanation
Indices: 33229609--33229760 Score: 286
Period size: 48 Copynumber: 3.2 Consensus size: 48
33229599 CGATGTGATG
*
33229609 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAAGGGCT
1 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
33229657 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
1 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
*
33229705 AATGTGAAATATATGTGTGATATGTATGTGTGGTAAAGCCGAATGGCT
1 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
33229753 AATGTGAA
1 AATGTGAA
33229761 TGTTGTAACA
Statistics
Matches: 102, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 102 1.00
ACGTcount: A:0.34, C:0.06, G:0.28, T:0.32
Consensus pattern (48 bp):
AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
Found at i:33229664 original size:96 final size:96
Alignment explanation
Indices: 33229094--33229617 Score: 749
Period size: 96 Copynumber: 5.5 Consensus size: 96
33229084 GTATGAGATG
* *
33229094 TATATATGTGATACGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGG
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAG--TATATATGTGATAAGG
* *
33229159 CCTAATGGCC-AATGTGATGAATGTGAAAGTGTA
64 CCTAATAGCCGAA-GGGATGAATGTGAAAGTGTA
*
33229192 TATACATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTATATATGTGATAAGGCC
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTATATATGTGATAAGGCC
* * *
33229257 TAATGGCC-AATGTGATGAATGTGAAAGAG--
66 TAATAGCCGAA-GGGATGAATGTGAAAGTGTA
*
33229286 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGG
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAG--TATATATGTGATAAGG
* *
33229351 CCTAATGGCC-AATGTGATGAATGTGAAAGTGTA
64 CCTAATAGCCGAA-GGGATGAATGTGAAAGTGTA
*
33229384 TATACATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTATATATGTGATAAGGCC
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTATATATGTGATAAGGCC
* *
33229449 TAATGGCC-AATGTGATGAATGTGAAAGTGTA
66 TAATAGCCGAA-GGGATGAATGTGAAAGTGTA
33229480 TATA-ATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTATATATGTGATAAGGCC
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTATATATGTGATAAGGCC
* * * *
33229544 TAATGGCCGATGTGATGAATGTGAAGGTGTA
66 TAATAGCCGAAGGGATGAATGTGAAAGTGTA
*
33229575 TATATATGTGATAAGGCCTAAT-GCCGATGTGATGAATGTGAAA
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
33229618 TATATGTGTG
Statistics
Matches: 408, Mismatches: 12, Indels: 15
0.94 0.03 0.03
Matches are distributed among these distances:
94 45 0.11
95 111 0.27
96 163 0.40
98 89 0.22
ACGTcount: A:0.35, C:0.09, G:0.27, T:0.29
Consensus pattern (96 bp):
TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTATATATGTGATAAGGCC
TAATAGCCGAAGGGATGAATGTGAAAGTGTA
Found at i:33231798 original size:40 final size:40
Alignment explanation
Indices: 33231752--33232052 Score: 299
Period size: 40 Copynumber: 7.5 Consensus size: 40
33231742 TGAATGATAC
**
33231752 CCGGGCTAAGTCCCGAAG-GCATTTATGCTAGTGAATATAT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG-ATATAT
* * * *
33231792 CCGGGCTAAGACCCGAAG-GCATTTGTG-TGAGTTGTTATAC
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCT-AG-TGATATAT
* * * *
33231832 CCGGGTTAAGACCCGAAG-GCAATT-GTGCTTGTGGTTATAT
1 CCGGGCTAAGTCCCGAAGAGC-ATTCGTGCTAGT-GATATAT
* * *
33231872 CC-GGCTAAATTCCGAAGAGCATTCGTGCTAATGATATAT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATAT
* ** *
33231911 CCGGGCTAAATTTCGAAGAGCATTCGTGCTAGTGATGTAT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATAT
* * *
33231951 CCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTAT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATAT
* * *
33231991 CCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTAT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATAT
*
33232031 CCGGGCTAGGTCCCGAAGAGCA
1 CCGGGCTAAGTCCCGAAGAGCA
33232053 ATCATGCTGG
Statistics
Matches: 230, Mismatches: 23, Indels: 16
0.86 0.09 0.06
Matches are distributed among these distances:
39 24 0.10
40 200 0.87
41 6 0.03
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATAT
Found at i:33235684 original size:49 final size:48
Alignment explanation
Indices: 33235621--33236052 Score: 728
Period size: 49 Copynumber: 9.0 Consensus size: 48
33235611 ATGTATGAGA
*
33235621 TGTATAT-ATGTGATACGGCCTAATGGCCAATGTGATGAATGTGAAAG
1 TGTATATAATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAG
33235668 TGTATATACATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAG
1 TGTATATA-ATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAG
*
33235717 AGTATAT-ATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAG
1 TGTATATAATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAG
33235764 TGTATATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAG
1 TGTATATA-ATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAG
33235813 TGTATATACATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAG
1 TGTATATA-ATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAG
*
33235862 AGTATAT-ATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAG
1 TGTATATAATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAG
33235909 TGTATATACATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAG
1 TGTATATA-ATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAG
* * *
33235958 AGTATAT-ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGG
1 TGTATATAATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAG
*
33236005 TGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 TGTATATA-ATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
33236053 TATATGTGTG
Statistics
Matches: 366, Mismatches: 11, Indels: 14
0.94 0.03 0.04
Matches are distributed among these distances:
47 143 0.39
49 223 0.61
ACGTcount: A:0.34, C:0.09, G:0.28, T:0.29
Consensus pattern (48 bp):
TGTATATAATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAG
Found at i:33235786 original size:96 final size:94
Alignment explanation
Indices: 33235621--33236052 Score: 711
Period size: 96 Copynumber: 4.5 Consensus size: 94
33235611 ATGTATGAGA
* *
33235621 TGTATATATGTGATACGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATACATGTGATAA
1 TGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTATAT--ATGTGATAA
33235686 GGCCTAATGGCCAATGTGATGAATGTGAAAG
64 GGCCTAATGGCCAATGTGATGAATGTGAAAG
* *
33235717 AGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAA
1 TGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAG--TATATATGTGATAA
33235782 GGCCTAATGGCCAATGTGATGAATGTGAAAG
64 GGCCTAATGGCCAATGTGATGAATGTGAAAG
33235813 TGTATATACATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTATATATGTGATAA
1 TGTATAT--ATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTATATATGTGATAA
33235878 GGCCTAATGGCCAATGTGATGAATGTGAAAG
64 GGCCTAATGGCCAATGTGATGAATGTGAAAG
33235909 TGTATATACATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTATATATGTGATAA
1 TGTATAT--ATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTATATATGTGATAA
* *
33235974 GGCCTAATGGCCGATGTGATGAATGTGAAGG
64 GGCCTAATGGCCAATGTGATGAATGTGAAAG
*
33236005 TGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 TG--TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
33236053 TATATGTGTG
Statistics
Matches: 323, Mismatches: 7, Indels: 12
0.94 0.02 0.04
Matches are distributed among these distances:
96 272 0.84
98 51 0.16
ACGTcount: A:0.34, C:0.09, G:0.28, T:0.29
Consensus pattern (94 bp):
TGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTATATATGTGATAAGG
CCTAATGGCCAATGTGATGAATGTGAAAG
Found at i:33235886 original size:145 final size:145
Alignment explanation
Indices: 33235623--33236052 Score: 765
Period size: 145 Copynumber: 3.0 Consensus size: 145
33235613 GTATGAGATG
*
33235623 TATATATGTGATACGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATACATGTGATAAGG
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATACATGTGATAAGG
33235688 CCTAATGGCCAATGTGATGAATGTGAAAGAGTATATATGTGATAAGGCCTAATGGCCAATGTGAT
66 CCTAATGGCCAATGTGATGAATGTGAAAGAGTATATATGTGATAAGGCCTAATGGCCAATGTGAT
33235753 GAATGTGAAAGTGTA
131 GAATGTGAAAGTGTA
33235768 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATACATGTGATAAGG
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATACATGTGATAAGG
33235833 CCTAATGGCCAATGTGATGAATGTGAAAGAGTATATATGTGATAAGGCCTAATGGCCAATGTGAT
66 CCTAATGGCCAATGTGATGAATGTGAAAGAGTATATATGTGATAAGGCCTAATGGCCAATGTGAT
33235898 GAATGTGAAAGTGTA
131 GAATGTGAAAGTGTA
* *
33235913 TATACATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTATAT--ATGTGATAAGG
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATACATGTGATAAGG
* * * *
33235976 CCTAATGGCCGATGTGATGAATGTGAAGGTGTATATATATGTGATAAGGCCTAATGGCCGATGTG
66 CCTAATGGCCAATGTGATGAATGTGAAAGAG--TATATATGTGATAAGGCCTAATGGCCAATGTG
33236041 ATGAATGTGAAA
129 ATGAATGTGAAA
33236053 TATATGTGTG
Statistics
Matches: 276, Mismatches: 7, Indels: 4
0.96 0.02 0.01
Matches are distributed among these distances:
143 39 0.14
145 237 0.86
ACGTcount: A:0.34, C:0.09, G:0.27, T:0.29
Consensus pattern (145 bp):
TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATACATGTGATAAGG
CCTAATGGCCAATGTGATGAATGTGAAAGAGTATATATGTGATAAGGCCTAATGGCCAATGTGAT
GAATGTGAAAGTGTA
Found at i:33236101 original size:48 final size:48
Alignment explanation
Indices: 33236044--33236195 Score: 268
Period size: 48 Copynumber: 3.2 Consensus size: 48
33236034 CGATGTGATG
* *
33236044 AATGTGAAATATATGTGTGATGTGTATATGTGGTAAAGCCGAAGGGCT
1 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
*
33236092 AATGTGAAATATATGCGTGATATGTATATGTGGTAAAGCCGAATGGCT
1 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
*
33236140 AATGTGAAATATATGTGTGATATGTATGTGTGGTAAAGCCGAATGGCT
1 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
33236188 AATGTGAA
1 AATGTGAA
33236196 TGTTGTAACA
Statistics
Matches: 99, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
48 99 1.00
ACGTcount: A:0.33, C:0.07, G:0.29, T:0.32
Consensus pattern (48 bp):
AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
Found at i:33236289 original size:37 final size:37
Alignment explanation
Indices: 33236235--33236362 Score: 220
Period size: 37 Copynumber: 3.4 Consensus size: 37
33236225 AACTTGGAAA
*
33236235 TATGTTCCGGGTGAGACCCGATGACTACGTGTGGAGAT
1 TATG-TCCGGGTAAGACCCGATGACTACGTGTGGAGAT
*
33236273 TATGTCTGGGTAAGACCCGATGACTACGTGTGGAGAT
1 TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
*
33236310 TATGTCCGGGTAAGACCCGATGACTACATGTGGAGAT
1 TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
33236347 TATGTCCGGGTAAGAC
1 TATGTCCGGGTAAGAC
33236363 TTCGTAATAA
Statistics
Matches: 86, Mismatches: 4, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
37 82 0.95
38 4 0.05
ACGTcount: A:0.24, C:0.18, G:0.32, T:0.26
Consensus pattern (37 bp):
TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
Found at i:33243885 original size:47 final size:47
Alignment explanation
Indices: 33243806--33243935 Score: 154
Period size: 47 Copynumber: 2.8 Consensus size: 47
33243796 TCTGTTTTAT
* * *
33243806 AGTACCTATACAATGGCCCATAGCCAAATCAAGGTAACTTATC-CCA
1 AGTACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTCATCTCCA
* * * *
33243852 GAGTATCTATACCATGGCCCGTAGCCAAGTCAAGGTAACTCCTCTCTA
1 -AGTACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTCATCTCCA
** *
33243900 AAAACCTATACCATGGCCCGTAGCCAAATCTAGGTA
1 AGTACCTATACCATGGCCCGTAGCCAAATCAAGGTA
33243936 TTATTCACAC
Statistics
Matches: 70, Mismatches: 12, Indels: 2
0.83 0.14 0.02
Matches are distributed among these distances:
47 68 0.97
48 2 0.03
ACGTcount: A:0.33, C:0.28, G:0.16, T:0.22
Consensus pattern (47 bp):
AGTACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTCATCTCCA
Found at i:33248859 original size:42 final size:41
Alignment explanation
Indices: 33248782--33248872 Score: 119
Period size: 42 Copynumber: 2.2 Consensus size: 41
33248772 TGTGTCTCAA
* * *
33248782 CCGTGTGTGACACACACTATGTGCACGGACGTGTGGTTTGG
1 CCGTGTGTGACACACACCATGTGCACGAACGTGTGGTGTGG
* * *
33248823 TCGTGTGTGACACACGGCCATGTGTACGAACGTGTGGTGTGG
1 CCGTGTGTGACACAC-ACCATGTGCACGAACGTGTGGTGTGG
33248865 CCGTGTGT
1 CCGTGTGT
33248873 CCCTAGCATC
Statistics
Matches: 42, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
41 14 0.33
42 28 0.67
ACGTcount: A:0.15, C:0.21, G:0.36, T:0.27
Consensus pattern (41 bp):
CCGTGTGTGACACACACCATGTGCACGAACGTGTGGTGTGG
Found at i:33256962 original size:29 final size:29
Alignment explanation
Indices: 33256929--33257059 Score: 122
Period size: 29 Copynumber: 4.5 Consensus size: 29
33256919 GTGACGAGAT
33256929 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
33256958 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
* ** * ***
33256987 CGGCACTGGGTGTGCGA-GCTCGAAGGGTA
1 TGGCACTAAGTGTGC-ATGCTGGAAATATA
* ** * *
33257016 TGGCACTATGTGTGCGGGCT-TAAATCACA
1 TGGCACTAAGTGTGCATGCTGGAAAT-ATA
33257045 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
33257060 GAAATCGAGT
Statistics
Matches: 82, Mismatches: 17, Indels: 6
0.78 0.16 0.06
Matches are distributed among these distances:
28 2 0.02
29 79 0.96
30 1 0.01
ACGTcount: A:0.25, C:0.18, G:0.32, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:33262297 original size:55 final size:53
Alignment explanation
Indices: 33262179--33262364 Score: 161
Period size: 55 Copynumber: 3.5 Consensus size: 53
33262169 TTCCTTTTTA
* * *
33262179 AACTTACCATTGCCATGTCTTGACATGGTCTTACGTG-GTATCCTTGCCTTAT-G
1 AACTTACCAATGCCATGCCTTG-CATGGTCTTACATGAG-ATCCTTGCCTTATAG
* *
33262232 AAC-T--C--TGCCATGCCTTCGCATGGTCTTACATGGGATCTTTGCCTTATAG
1 AACTTACCAATGCCATGCCTT-GCATGGTCTTACATGAGATCCTTGCCTTATAG
** * * ** *
33262281 TAGTTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTGTAG
1 -AACTTACCAATGCCATGCCTTG-CATGGTCTTACATGAGATCCTTGCCTTATAG
33262336 AACTTACCAATGCCATGCCTTGGCATGGT
1 AACTTACCAATGCCATGCCTT-GCATGGT
33262365 ATTATCCTTA
Statistics
Matches: 107, Mismatches: 15, Indels: 21
0.75 0.10 0.15
Matches are distributed among these distances:
48 35 0.33
49 3 0.03
50 2 0.02
51 1 0.01
52 1 0.01
53 4 0.04
54 24 0.22
55 37 0.35
ACGTcount: A:0.20, C:0.24, G:0.19, T:0.37
Consensus pattern (53 bp):
AACTTACCAATGCCATGCCTTGCATGGTCTTACATGAGATCCTTGCCTTATAG
Found at i:33269729 original size:53 final size:54
Alignment explanation
Indices: 33269660--33269854 Score: 196
Period size: 53 Copynumber: 3.6 Consensus size: 54
33269650 TTCCTTTTTA
* * * *
33269660 AACTTACCATTTCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTAT-G
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
* * * *
33269713 AACTCACCATTGCCATGCCTTCG-CATGGTCTTACATGGGATCTTTGCCTTATAG
1 AACTTACCAATGCCATGCCTT-GACATGGTCTTACATGGTATCCTTGCCTTATAG
** * * * * * *
33269767 TAGTTTATCAATGCCATGTCTTGACATGATCTTACATGATTTCCTTGCCTTCTAG
1 -AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
* *
33269822 AAGTTACCAATGCCATGCCTTGGCATGGTCTTA
1 AACTTACCAATGCCATGCCTTGACATGGTCTTA
33269855 TCCTTAAACC
Statistics
Matches: 114, Mismatches: 24, Indels: 7
0.79 0.17 0.05
Matches are distributed among these distances:
53 44 0.39
54 30 0.26
55 40 0.35
ACGTcount: A:0.21, C:0.25, G:0.17, T:0.37
Consensus pattern (54 bp):
AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
Found at i:33275012 original size:25 final size:26
Alignment explanation
Indices: 33274958--33275012 Score: 62
Period size: 25 Copynumber: 2.2 Consensus size: 26
33274948 TTTCATATTT
*
33274958 TATAATAAGGTTAAATATGTAACTAA
1 TATAATAACGTTAAATATGTAACTAA
*
33274984 -ATAAT-ACGTTAATATATGTTA-TAA
1 TATAATAACGTTAA-ATATGTAACTAA
33275008 TATAA
1 TATAA
33275013 CATAAATTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
24 9 0.36
25 16 0.64
ACGTcount: A:0.49, C:0.04, G:0.09, T:0.38
Consensus pattern (26 bp):
TATAATAACGTTAAATATGTAACTAA
Found at i:33285115 original size:21 final size:21
Alignment explanation
Indices: 33285067--33285120 Score: 56
Period size: 21 Copynumber: 2.6 Consensus size: 21
33285057 TATTTTAAAT
*
33285067 ATTTATAGAAAATAATTATAA
1 ATTTATAGAAAATAATAATAA
**
33285088 AAATATA-AAAATAAATAATAA
1 ATTTATAGAAAAT-AATAATAA
*
33285109 ATTTATATAAAA
1 ATTTATAGAAAA
33285121 ATTTTAAAAA
Statistics
Matches: 26, Mismatches: 5, Indels: 3
0.76 0.15 0.09
Matches are distributed among these distances:
20 5 0.19
21 17 0.65
22 4 0.15
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (21 bp):
ATTTATAGAAAATAATAATAA
Found at i:33285164 original size:14 final size:15
Alignment explanation
Indices: 33285145--33285174 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
33285135 TTAACCATTA
33285145 TTTAAAAT-TTATAT
1 TTTAAAATATTATAT
33285159 TTTAAAATATTATAT
1 TTTAAAATATTATAT
33285174 T
1 T
33285175 CTATATCAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 8 0.53
15 7 0.47
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (15 bp):
TTTAAAATATTATAT
Found at i:33285280 original size:14 final size:14
Alignment explanation
Indices: 33285269--33285298 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
33285259 ATAAAATGTT
33285269 TTTC-GGAAAATGA
1 TTTCTGGAAAATGA
33285282 TTTCTGGAAAATGA
1 TTTCTGGAAAATGA
33285296 TTT
1 TTT
33285299 ACTTTTCTAG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 4 0.25
14 12 0.75
ACGTcount: A:0.33, C:0.07, G:0.20, T:0.40
Consensus pattern (14 bp):
TTTCTGGAAAATGA
Found at i:33291323 original size:46 final size:47
Alignment explanation
Indices: 33291076--33291333 Score: 176
Period size: 46 Copynumber: 5.5 Consensus size: 47
33291066 ATGCCGGCGC
* * * *
33291076 CATGTCCCAAACATGGTGTTACGCTGGCTCT-CAT-CTATTGGTGTTGATG
1 CATGTCCCAGACAT-GTCTTACACTGGCTCTACATACTA-T-G-GCTGATG
* ** * * *
33291125 TCATGTCCCAGACAGGTCTTACACTAACAC-ACA-AC-A-AGCTGACG
1 -CATGTCCCAGACATGTCTTACACTGGCTCTACATACTATGGCTGATG
* * * * * *
33291169 CCATGTCCCAGACATGTCTTACACTAGCTCTCGCCT-CAAT-GCCGATT
1 -CATGTCCCAGACATGTCTTACACTGGCTCT-ACATACTATGGCTGATG
* * **
33291216 CATGTCCCAGACATATCTTACACTGGCT-TAAATATCTCGGGGCTGATG
1 CATGTCCCAGACATGTCTTACACTGGCTCTACATA-CT-ATGGCTGATG
33291264 CATGTCCCAGACATGTCTTACACTGGCTCT-CATACTATGGCTGATG
1 CATGTCCCAGACATGTCTTACACTGGCTCTACATACTATGGCTGATG
*
33291310 CATGTCCTAGACATGTCTTACACT
1 CATGTCCCAGACATGTCTTACACT
33291334 AGCACACAAA
Statistics
Matches: 162, Mismatches: 34, Indels: 28
0.72 0.15 0.12
Matches are distributed among these distances:
44 32 0.20
45 1 0.01
46 60 0.37
47 7 0.04
48 36 0.22
49 14 0.09
50 12 0.07
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.29
Consensus pattern (47 bp):
CATGTCCCAGACATGTCTTACACTGGCTCTACATACTATGGCTGATG
Found at i:33291794 original size:35 final size:36
Alignment explanation
Indices: 33291751--33291822 Score: 137
Period size: 35 Copynumber: 2.0 Consensus size: 36
33291741 TTTTTATCGA
33291751 ATTTATTCATATCTTAAG-CTAGCCAAACCCTTTTT
1 ATTTATTCATATCTTAAGCCTAGCCAAACCCTTTTT
33291786 ATTTATTCATATCTTAAGCCTAGCCAAACCCTTTTT
1 ATTTATTCATATCTTAAGCCTAGCCAAACCCTTTTT
33291822 A
1 A
33291823 CTTTTACAGA
Statistics
Matches: 36, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
35 18 0.50
36 18 0.50
ACGTcount: A:0.29, C:0.24, G:0.06, T:0.42
Consensus pattern (36 bp):
ATTTATTCATATCTTAAGCCTAGCCAAACCCTTTTT
Found at i:33295727 original size:77 final size:79
Alignment explanation
Indices: 33295640--33295821 Score: 251
Period size: 77 Copynumber: 2.3 Consensus size: 79
33295630 AATGTTCGAG
33295640 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGACATCCGGGCTAAG-CCC-AAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGACATCCGGGCTAAGTCCCGAAGGC
33295703 AATTGTGCGAGTTA
66 AATTGTGCGAGTTA
* * * *
33295717 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGACATCCGGGCTAAGTCCCGAAGGC
* *
33295782 ATTTGTGCGGGTTA
66 AATTGTGCGAGTTA
** * *
33295796 CCATAACCGGGCTATGTCCCGAAGGC
1 TGATATCCGGGCTAAG-CCCGAAGGC
33295822 GTTTGAACGA
Statistics
Matches: 92, Mismatches: 10, Indels: 3
0.88 0.10 0.03
Matches are distributed among these distances:
77 51 0.55
78 3 0.03
79 29 0.32
80 9 0.10
ACGTcount: A:0.24, C:0.23, G:0.30, T:0.23
Consensus pattern (79 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGACATCCGGGCTAAGTCCCGAAGGC
AATTGTGCGAGTTA
Found at i:33295788 original size:40 final size:39
Alignment explanation
Indices: 33295639--33295790 Score: 234
Period size: 39 Copynumber: 3.9 Consensus size: 39
33295629 AAATGTTCGA
* *
33295639 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
*
33295678 GTGACATCCGGGCTAAGCCC-AAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
*
33295716 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
* *
33295755 GTGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCG
1 GTGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCG
33295791 GGTTACCATA
Statistics
Matches: 103, Mismatches: 8, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
38 34 0.33
39 52 0.50
40 17 0.17
ACGTcount: A:0.24, C:0.21, G:0.31, T:0.24
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
Found at i:33295806 original size:40 final size:39
Alignment explanation
Indices: 33295640--33295821 Score: 231
Period size: 39 Copynumber: 4.6 Consensus size: 39
33295630 AATGTTCGAG
* * *
33295640 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
*
33295679 TGACATCCGGGCTAAGCCC-AAGGCAATTGTGCGAGTTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
*
33295717 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* * *
33295756 TGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTA
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTA
** * *
33295796 CCATAACCGGGCTATGTCCCGAAGGC
1 TGATATCCGGGCTAAG-CCCGAAGGC
33295822 GTTTGAACGA
Statistics
Matches: 126, Mismatches: 15, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
38 34 0.27
39 51 0.40
40 41 0.33
ACGTcount: A:0.24, C:0.23, G:0.30, T:0.23
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
Found at i:33298434 original size:28 final size:27
Alignment explanation
Indices: 33298371--33298440 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
33298361 ATAGTGAGTC
33298371 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
* *
33298398 CACACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
33298426 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
33298441 GTACAAGTTT
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
27 21 0.54
28 18 0.46
ACGTcount: A:0.31, C:0.27, G:0.13, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:33300972 original size:15 final size:15
Alignment explanation
Indices: 33300952--33300993 Score: 84
Period size: 15 Copynumber: 2.8 Consensus size: 15
33300942 ATTGTTGCTT
33300952 GATAACACGGTGATC
1 GATAACACGGTGATC
33300967 GATAACACGGTGATC
1 GATAACACGGTGATC
33300982 GATAACACGGTG
1 GATAACACGGTG
33300994 TGGGAGGCAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 27 1.00
ACGTcount: A:0.33, C:0.19, G:0.29, T:0.19
Consensus pattern (15 bp):
GATAACACGGTGATC
Found at i:33303925 original size:2 final size:2
Alignment explanation
Indices: 33303915--33303947 Score: 50
Period size: 2 Copynumber: 17.0 Consensus size: 2
33303905 TTTTGGTTTG
*
33303915 TA TA T- TA TA TA TA TA TA TA TA CA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
33303948 CGTCAATGGT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
1 1 0.04
2 27 0.96
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.48
Consensus pattern (2 bp):
TA
Found at i:33313564 original size:29 final size:27
Alignment explanation
Indices: 33313530--33313632 Score: 98
Period size: 29 Copynumber: 3.6 Consensus size: 27
33313520 TACTCAATCA
*
33313530 CGCACACTTAGTGCCATGTGATTCAAGCC
1 CGCACACTTAGTGCCAT-T-ATTCAAGCT
* * *
33313559 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCAT-TA-TTCAAGCT
*
33313588 CGCACACTTAGTGCCATACATTACAAGCT
1 CGCACACTTAGTGCCAT-TATT-CAAGCT
*
33313617 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
33313633 ATCTCATCCC
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 2 0.03
29 60 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (27 bp):
CGCACACTTAGTGCCATTATTCAAGCT
Found at i:33315818 original size:39 final size:40
Alignment explanation
Indices: 33315718--33315899 Score: 167
Period size: 40 Copynumber: 4.6 Consensus size: 40
33315708 TTGAATGATG
* * *
33315718 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGC-AAGTTACTAAA
* * * *
33315758 TCCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTCGTGCAAGTTACTAAA
33315798 TCCGGGCTAAG-CCCGAAGGCATT-GTGCAAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCAAGTTACTAAA
* * * **
33315836 CCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCGCTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCAAGTTACTA-AA
** *
33315877 -CCGGGCTTCGTCCTGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
33315900 TGAGCGAGTC
Statistics
Matches: 116, Mismatches: 20, Indels: 12
0.78 0.14 0.08
Matches are distributed among these distances:
38 22 0.19
39 23 0.20
40 62 0.53
41 9 0.08
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCAAGTTACTAAA
Found at i:33315863 original size:78 final size:80
Alignment explanation
Indices: 33315718--33315868 Score: 209
Period size: 78 Copynumber: 1.9 Consensus size: 80
33315708 TTGAATGATG
* * * *
33315718 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATTC
1 TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
33315783 GTGCGAGTTAATAAA
66 GTGCGAGTTAATAAA
* **
33315798 TCCGGGCTAAG-CCCGAAGGCATTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCATT
33315860 CGTGCGAGT
65 CGTGCGAGT
33315869 CGCTATAACC
Statistics
Matches: 63, Mismatches: 7, Indels: 4
0.85 0.09 0.05
Matches are distributed among these distances:
77 1 0.02
78 36 0.57
79 15 0.24
80 11 0.17
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.23
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
GTGCGAGTTAATAAA
Found at i:33323337 original size:39 final size:40
Alignment explanation
Indices: 33323237--33323418 Score: 176
Period size: 40 Copynumber: 4.6 Consensus size: 40
33323227 TCGAATGATG
* * *
33323237 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGC-AAGTTACTAAA
* * * *
33323277 TCCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTCGTGCAAGTTACTAAA
33323317 TCCGGGCTAAG-CCCGAAGGCATT-GTGCAAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCAAGTTACTAAA
* * * **
33323355 CCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCGCTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCAAGTTACTA-AA
**
33323396 -CCGGGCTTCGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
33323419 TGAGCGAGTC
Statistics
Matches: 117, Mismatches: 19, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
38 22 0.19
39 23 0.20
40 63 0.54
41 9 0.08
ACGTcount: A:0.24, C:0.25, G:0.28, T:0.23
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCAAGTTACTAAA
Found at i:33323382 original size:78 final size:80
Alignment explanation
Indices: 33323237--33323418 Score: 210
Period size: 78 Copynumber: 2.3 Consensus size: 80
33323227 TCGAATGATG
* * * *
33323237 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATTC
1 TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
33323302 GTGCGAGTTAATAAA
66 GTGCGAGTTAATAAA
* **
33323317 TCCGGGCTAAG-CCCGAAGGCATTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCATT
***
33323379 CGTGCGAGTCGCTATAA
65 CGTGCGAGTTAATA-AA
**
33323396 -CCGGGCTTCGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
33323419 TGAGCGAGTC
Statistics
Matches: 87, Mismatches: 12, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
77 1 0.01
78 46 0.53
79 29 0.33
80 11 0.13
ACGTcount: A:0.24, C:0.25, G:0.28, T:0.23
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
GTGCGAGTTAATAAA
Found at i:33324544 original size:40 final size:40
Alignment explanation
Indices: 33324489--33324692 Score: 182
Period size: 40 Copynumber: 5.1 Consensus size: 40
33324479 TGATACCCGG
* *
33324489 GCTAAGTCCCGAAGGCATTTATGCTAGTGATTATATCCGA
1 GCTAAGACCCGAAGGCATTTGTGCTAGTGATTATATCCGA
* * * *
33324529 GCTAAGACCCGAAGGCATTCGTGCGAGTTATTATATCCGG
1 GCTAAGACCCGAAGGCATTTGTGCTAGTGATTATATCCGA
* *
33324569 GCTAAGACCCGAAGGCATTCGTG-TGAGTTG-TTATAT-CTA
1 GCTAAGACCCGAAGGCATTTGTGCT-AG-TGATTATATCCGA
* * ** * *
33324608 GGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAATCCGG
1 -GCTAAGACCCGAAGGCATTTGTGCTAGTGATTATATCCGA
* * * * *
33324649 GTTAAGAACCGAAGGCAATTGTGCTTGTGGTTATATCCG-
1 GCTAAGACCCGAAGGCATTTGTGCTAGTGATTATATCCGA
33324688 GCTAA
1 GCTAA
33324693 ATTCCGAAGA
Statistics
Matches: 129, Mismatches: 29, Indels: 13
0.75 0.17 0.08
Matches are distributed among these distances:
39 6 0.05
40 121 0.94
41 2 0.02
ACGTcount: A:0.27, C:0.20, G:0.26, T:0.27
Consensus pattern (40 bp):
GCTAAGACCCGAAGGCATTTGTGCTAGTGATTATATCCGA
Found at i:33324682 original size:80 final size:80
Alignment explanation
Indices: 33324485--33324685 Score: 219
Period size: 80 Copynumber: 2.5 Consensus size: 80
33324475 TGAATGATAC
** * * * *
33324485 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATATCCGAGCTAAGACCCGAAGGCATTCG
1 CCGGGCTAAGAACCGAAGGCAATTGTGCTAGTGGTTATATCAGAGCTAAGACCCGAAGGCATTCG
* ** *
33324550 TGCGAGTTATTATAT
66 TGCAAGTTACCAAAT
* *
33324565 CCGGGCTAAGACCCGAAGGC-ATTCGTG-TGAGTTGTTATATCTAG-GCTAAGACCCGAAGGCAT
1 CCGGGCTAAGAACCGAAGGCAATT-GTGCT-AGTGGTTATATC-AGAGCTAAGACCCGAAGGCAT
*
33324627 TTGTGCAAGTTACCAAAT
63 TCGTGCAAGTTACCAAAT
* *
33324645 CCGGGTTAAGAACCGAAGGCAATTGTGCTTGTGGTTATATC
1 CCGGGCTAAGAACCGAAGGCAATTGTGCTAGTGGTTATATC
33324686 CGGCTAAATT
Statistics
Matches: 101, Mismatches: 15, Indels: 10
0.80 0.12 0.08
Matches are distributed among these distances:
79 3 0.03
80 93 0.92
81 5 0.05
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.27
Consensus pattern (80 bp):
CCGGGCTAAGAACCGAAGGCAATTGTGCTAGTGGTTATATCAGAGCTAAGACCCGAAGGCATTCG
TGCAAGTTACCAAAT
Found at i:33326790 original size:30 final size:30
Alignment explanation
Indices: 33326754--33326913 Score: 213
Period size: 29 Copynumber: 5.5 Consensus size: 30
33326744 GACAAGATTG
* * * * *
33326754 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
* *
33326784 GCACTAAGTGTGCGAGTTTG---ATTATACA
1 GCACTAAGTGTGCGAG-CTGAAAATTATATA
33326812 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
33326841 GCACTAAGTGTGCGAGCTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
33326871 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
33326900 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
33326914 GATTCACTAT
Statistics
Matches: 120, Mismatches: 5, Indels: 11
0.88 0.04 0.08
Matches are distributed among these distances:
27 2 0.02
28 23 0.19
29 48 0.40
30 45 0.38
31 2 0.02
ACGTcount: A:0.33, C:0.14, G:0.26, T:0.27
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGCTGAAAATTATATA
Found at i:33326882 original size:59 final size:57
Alignment explanation
Indices: 33326754--33326913 Score: 214
Period size: 59 Copynumber: 2.8 Consensus size: 57
33326744 GACAAGATTG
* * * * * *
33326754 GCACTAAGTGTGCGGGTTTAAAATTGTACAGCACTAAGTGTGCGAGTTTGATTATACA
1 GCACTAAGTGTGCGAGCTGAAAA-TATATAGCACTAAGTGTGCGAGTCTGATTATACA
*
33326812 GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCGAG-CTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCGAGTCTG---ATTATACA
33326871 GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCG
1 GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCG
33326914 GATTCACTAT
Statistics
Matches: 92, Mismatches: 7, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
56 2 0.02
57 20 0.22
58 20 0.22
59 50 0.54
ACGTcount: A:0.33, C:0.14, G:0.26, T:0.27
Consensus pattern (57 bp):
GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCGAGTCTGATTATACA
Found at i:33328327 original size:41 final size:41
Alignment explanation
Indices: 33328282--33328399 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
33328272 TGAAAGATAA
33328282 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
33328323 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
33328353 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
33328394 ATGTAG
1 ATGTAG
33328400 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:33328338 original size:71 final size:71
Alignment explanation
Indices: 33328250--33328413 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
33328240 GAGATGTATC
33328250 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
33328315 AGGACA
66 AGGACA
33328321 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
33328386 AGGACA
66 AGGACA
33328392 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
33328414 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:33337602 original size:30 final size:30
Alignment explanation
Indices: 33337566--33337725 Score: 213
Period size: 29 Copynumber: 5.5 Consensus size: 30
33337556 GACAAGATTG
* * * * *
33337566 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
* *
33337596 GCACTAAGTGTGCGAGTTTG---ATTATACA
1 GCACTAAGTGTGCGAG-CTGAAAATTATATA
33337624 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
33337653 GCACTAAGTGTGCGAGCTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
33337683 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
33337712 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
33337726 GATTCACTAT
Statistics
Matches: 120, Mismatches: 5, Indels: 11
0.88 0.04 0.08
Matches are distributed among these distances:
27 2 0.02
28 23 0.19
29 48 0.40
30 45 0.38
31 2 0.02
ACGTcount: A:0.33, C:0.14, G:0.26, T:0.27
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGCTGAAAATTATATA
Found at i:33337694 original size:59 final size:57
Alignment explanation
Indices: 33337566--33337725 Score: 214
Period size: 59 Copynumber: 2.8 Consensus size: 57
33337556 GACAAGATTG
* * * * * *
33337566 GCACTAAGTGTGCGGGTTTAAAATTGTACAGCACTAAGTGTGCGAGTTTGATTATACA
1 GCACTAAGTGTGCGAGCTGAAAA-TATATAGCACTAAGTGTGCGAGTCTGATTATACA
*
33337624 GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCGAG-CTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCGAGTCTG---ATTATACA
33337683 GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCG
1 GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCG
33337726 GATTCACTAT
Statistics
Matches: 92, Mismatches: 7, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
56 2 0.02
57 20 0.22
58 20 0.22
59 50 0.54
ACGTcount: A:0.33, C:0.14, G:0.26, T:0.27
Consensus pattern (57 bp):
GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCGAGTCTGATTATACA
Found at i:33348443 original size:29 final size:29
Alignment explanation
Indices: 33348411--33348483 Score: 101
Period size: 29 Copynumber: 2.5 Consensus size: 29
33348401 CTTCGAGCTC
*
33348411 GCACACCCAGTGCCGTATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
33348440 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
33348469 GCACACTTAGTGCCA
1 GCACACCCAGTGCCA
33348484 ATCTCGTCAC
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (29 bp):
GCACACCCAGTGCCATATATTTCCAGCAT
Found at i:33357616 original size:21 final size:22
Alignment explanation
Indices: 33357590--33357630 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
33357580 CTCTTAACAA
*
33357590 AGGGGC-ACACGCTAGTGTGGG
1 AGGGGCAACACGCCAGTGTGGG
33357611 AGGGGCAACACGCCAGTGTG
1 AGGGGCAACACGCCAGTGTG
33357631 ACATTTCAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 6 0.33
22 12 0.67
ACGTcount: A:0.22, C:0.22, G:0.44, T:0.12
Consensus pattern (22 bp):
AGGGGCAACACGCCAGTGTGGG
Found at i:33367747 original size:40 final size:39
Alignment explanation
Indices: 33367679--33367845 Score: 172
Period size: 39 Copynumber: 4.2 Consensus size: 39
33367669 ATTTGATGTG
* * *
33367679 TATCAGGGCTTAAAGACCCACAGCCTATATGCTGGAATTA
1 TATCCGGGCTT-AAGACCCGCAGGCTATATGCTGGAATTA
33367719 TATCCGGGCTTAAAGACCCGCAGGCTATATGCTGGAATTA
1 TATCCGGGCTT-AAGACCCGCAGGCTATATGCTGGAATTA
* * ** *
33367759 TACCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTA
1 TATCCGGGCTTAAGACCCGCAGGCTATATGCTGGAATTA
* * ** ** *
33367798 TAACCGGACTTAAGGTCCGCAGGCTACGTGCTGGAAATA
1 TATCCGGGCTTAAGACCCGCAGGCTATATGCTGGAATTA
*
33367837 TGTCCGGGC
1 TATCCGGGC
33367846 AAAAGTCCTG
Statistics
Matches: 113, Mismatches: 14, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
39 67 0.59
40 46 0.41
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.24
Consensus pattern (39 bp):
TATCCGGGCTTAAGACCCGCAGGCTATATGCTGGAATTA
Found at i:33367791 original size:39 final size:39
Alignment explanation
Indices: 33367703--33367833 Score: 181
Period size: 39 Copynumber: 3.3 Consensus size: 39
33367693 GACCCACAGC
* * **
33367703 CTATATGCTGGAATTATATCCGGGCTTAAAGACCCGCAGG
1 CTATATGCTGGAATTATAACCGGACTT-AAGGTCCGCAGG
*
33367743 CTATATGCTGGAATTATACCCGGACTTAAGGTCCGCAGG
1 CTATATGCTGGAATTATAACCGGACTTAAGGTCCGCAGG
*
33367782 CTATGTGCTGGAATTATAACCGGACTTAAGGTCCGCAGG
1 CTATATGCTGGAATTATAACCGGACTTAAGGTCCGCAGG
**
33367821 CTACGTGCTGGAA
1 CTATATGCTGGAA
33367834 ATATGTCCGG
Statistics
Matches: 84, Mismatches: 7, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
39 59 0.70
40 25 0.30
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (39 bp):
CTATATGCTGGAATTATAACCGGACTTAAGGTCCGCAGG
Found at i:33370363 original size:11 final size:11
Alignment explanation
Indices: 33370347--33370372 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
33370337 CGAAGCCCAC
33370347 ATCACAATAAT
1 ATCACAATAAT
33370358 ATCACAATAAT
1 ATCACAATAAT
33370369 ATCA
1 ATCA
33370373 TACGTGCAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.54, C:0.19, G:0.00, T:0.27
Consensus pattern (11 bp):
ATCACAATAAT
Found at i:33371197 original size:17 final size:18
Alignment explanation
Indices: 33371175--33371208 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
33371165 TGCCTATTAT
33371175 GGGCCCA-ATAGCCCATC
1 GGGCCCATATAGCCCATC
*
33371192 GGGCCCATTTAGCCCAT
1 GGGCCCATATAGCCCAT
33371209 ACTGCCTTGT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.21, C:0.38, G:0.24, T:0.18
Consensus pattern (18 bp):
GGGCCCATATAGCCCATC
Found at i:33371369 original size:16 final size:16
Alignment explanation
Indices: 33371327--33371371 Score: 63
Period size: 16 Copynumber: 2.8 Consensus size: 16
33371317 ATAGCCAAAC
33371327 TTTCGGCTTTTCGACA
1 TTTCGGCTTTTCGACA
* * *
33371343 TTTCAGTTTTTTGACA
1 TTTCGGCTTTTCGACA
33371359 TTTCGGCTTTTCG
1 TTTCGGCTTTTCG
33371372 GGATTTGCCG
Statistics
Matches: 23, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.11, C:0.20, G:0.18, T:0.51
Consensus pattern (16 bp):
TTTCGGCTTTTCGACA
Found at i:33374158 original size:13 final size:13
Alignment explanation
Indices: 33374136--33374168 Score: 57
Period size: 13 Copynumber: 2.5 Consensus size: 13
33374126 AAGCTACATC
*
33374136 AGTAGCGAGTGTT
1 AGTAGTGAGTGTT
33374149 AGTAGTGAGTGTT
1 AGTAGTGAGTGTT
33374162 AGTAGTG
1 AGTAGTG
33374169 TGAAAGACAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.24, C:0.03, G:0.39, T:0.33
Consensus pattern (13 bp):
AGTAGTGAGTGTT
Found at i:33375966 original size:31 final size:31
Alignment explanation
Indices: 33375931--33375989 Score: 109
Period size: 31 Copynumber: 1.9 Consensus size: 31
33375921 CACCAGTGTT
*
33375931 AGTTCAGCTTGAGTCGGGTAAAGAATTCATA
1 AGTTCAGATTGAGTCGGGTAAAGAATTCATA
33375962 AGTTCAGATTGAGTCGGGTAAAGAATTC
1 AGTTCAGATTGAGTCGGGTAAAGAATTC
33375990 GTAGTTTTCA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.32, C:0.12, G:0.27, T:0.29
Consensus pattern (31 bp):
AGTTCAGATTGAGTCGGGTAAAGAATTCATA
Found at i:33382576 original size:42 final size:42
Alignment explanation
Indices: 33382517--33382611 Score: 154
Period size: 42 Copynumber: 2.3 Consensus size: 42
33382507 CACATGGGCA
* **
33382517 TGTGCCCAGGCCATGTGAGTCACACGGTTAAGGACACGGCTG
1 TGTGCCCAGGCCATGTGAGTCACACGGTCAAGGACACAACTG
33382559 TGTGCCCAGGCCATGTGAGTCACACGGTCAAGGACACAACTG
1 TGTGCCCAGGCCATGTGAGTCACACGGTCAAGGACACAACTG
*
33382601 TGTGTCCAGGC
1 TGTGCCCAGGC
33382612 AGTGTAACTC
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 49 1.00
ACGTcount: A:0.22, C:0.27, G:0.32, T:0.19
Consensus pattern (42 bp):
TGTGCCCAGGCCATGTGAGTCACACGGTCAAGGACACAACTG
Found at i:33388829 original size:49 final size:49
Alignment explanation
Indices: 33388768--33388976 Score: 300
Period size: 49 Copynumber: 4.3 Consensus size: 49
33388758 ATGTATGAGA
*
33388768 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTG
* * *
33388817 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGAGAAGGTG
1 TATATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTG
33388866 TATATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTG
1 TATATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTG
* * * * * *
33388915 --TATATATGTGATAGGGCCGAGTGGCCAAAGTGATGGATGTGGAAGTG
1 TATATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTG
33388962 TATA-A-ATGTGATAAG
1 TATATATATGTGATAAG
33388977 TCCGAAGGGC
Statistics
Matches: 146, Mismatches: 12, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
47 50 0.34
48 1 0.01
49 95 0.65
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (49 bp):
TATATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTG
Found at i:33394207 original size:42 final size:41
Alignment explanation
Indices: 33394160--33394295 Score: 115
Period size: 39 Copynumber: 3.3 Consensus size: 41
33394150 CTTGATATCA
33394160 CACACTAAGTGCCAATACATAGTCGAAGCTATTACAATCTCT-
1 CACACTAAGTGCCAATACATAGTCGAAGCTATT-CAATCT-TG
* * * * *
33394202 CACACTTAGCT-CC-TTAC--AGCCAAAGCTATCTCAGTCTTG
1 CACACTAAG-TGCCAATACATAGTCGAAGCTAT-TCAATCTTG
*
33394241 CACACTAAGTGCCAAGACATAGTCGAAGCTATTCTGAATC--G
1 CACACTAAGTGCCAATACATAGTCGAAGCTATTC--AATCTTG
33394282 CACACTAAGTGCCA
1 CACACTAAGTGCCA
33394296 TATATATATA
Statistics
Matches: 74, Mismatches: 11, Indels: 19
0.71 0.11 0.18
Matches are distributed among these distances:
38 2 0.03
39 25 0.34
40 3 0.04
41 20 0.27
42 20 0.27
43 4 0.05
ACGTcount: A:0.32, C:0.29, G:0.15, T:0.24
Consensus pattern (41 bp):
CACACTAAGTGCCAATACATAGTCGAAGCTATTCAATCTTG
Found at i:33401638 original size:42 final size:41
Alignment explanation
Indices: 33401576--33401800 Score: 203
Period size: 42 Copynumber: 5.5 Consensus size: 41
33401566 AATACTCAAT
* *
33401576 ATCTCGCACACTAAGGGCCAATACATAGCTGAAGCTATTATA
1 ATCTCGCACACTAAGTGCCAATACATAGCCGAAGCTATT-TA
* *
33401618 ATCTCACACAGTAAGTGCCAATACATAGCCGAAGCTATTATA
1 ATCTCGCACACTAAGTGCCAATACATAGCCGAAGCTATT-TA
* * * **
33401660 ATCTCGCACAGTAAGTTCC-TTACATAGCCGAAGCTATCTCG
1 ATCTCGCACACTAAGTGCCAATACATAGCCGAAGCTAT-TTA
* * **
33401701 GTCTCGCACACTAAGTGCC-ATATATAGCTAAAGCTATTTCGA
1 ATCTCGCACACTAAGTGCCAATACATAGCCGAAGCTATTT--A
* *
33401743 A--TCGCACACTAAGTG-CAATATATAGCCGAAGCTATCTCGA
1 ATCTCGCACACTAAGTGCCAATACATAGCCGAAGCTAT-T-TA
33401783 AT-T-GCACACTAAGTGCCA
1 ATCTCGCACACTAAGTGCCA
33401801 TATATATATC
Statistics
Matches: 153, Mismatches: 22, Indels: 17
0.80 0.11 0.09
Matches are distributed among these distances:
39 1 0.01
40 45 0.29
41 51 0.33
42 56 0.37
ACGTcount: A:0.33, C:0.25, G:0.16, T:0.25
Consensus pattern (41 bp):
ATCTCGCACACTAAGTGCCAATACATAGCCGAAGCTATTTA
Found at i:33401757 original size:40 final size:40
Alignment explanation
Indices: 33401579--33401806 Score: 172
Period size: 40 Copynumber: 5.6 Consensus size: 40
33401569 ACTCAATATC
* * ** **
33401579 TCGCACACTAAGGGCCAATACATAGCTGAAGCTAT-TATAA
1 TCGCACACTAAGTGCC-ATATATAGCCAAAGCTATCTCGAA
* * * **
33401619 TCTCACACAGTAAGTGCCAATACATAGCCGAAGCTAT-TATAA
1 TCGCACAC--TAAGTGCC-ATATATAGCCAAAGCTATCTCGAA
* * * * * **
33401661 TCTCGCACAGTAAGTTCCTTACATAGCCGAAGCTATCTCGGTC
1 --TCGCACACTAAGTGCCATATATAGCCAAAGCTATCTC-GAA
* *
33401704 TCGCACACTAAGTGCCATATATAGCTAAAGCTATTTCGAA
1 TCGCACACTAAGTGCCATATATAGCCAAAGCTATCTCGAA
* *
33401744 TCGCACACTAAGTGCAATATATAGCCGAAGCTATCTCGAA
1 TCGCACACTAAGTGCCATATATAGCCAAAGCTATCTCGAA
*
33401784 TTGCACACTAAGTGCCATATATA
1 TCGCACACTAAGTGCCATATATA
33401807 TATCTGAATC
Statistics
Matches: 156, Mismatches: 26, Indels: 12
0.80 0.13 0.06
Matches are distributed among these distances:
40 65 0.42
41 47 0.30
42 38 0.24
44 6 0.04
ACGTcount: A:0.34, C:0.25, G:0.16, T:0.25
Consensus pattern (40 bp):
TCGCACACTAAGTGCCATATATAGCCAAAGCTATCTCGAA
Found at i:33401807 original size:42 final size:41
Alignment explanation
Indices: 33401576--33401800 Score: 203
Period size: 41 Copynumber: 5.5 Consensus size: 41
33401566 AATACTCAAT
* * **
33401576 ATCTCGCACACTAAGGGCCAATACATAGCTGAAGCTATTATA
1 ATCT-GCACACTAAGTGCCAATACATAGCCGAAGCTATTCGA
**
33401618 ATCT-CACACAGTAAGTGCCAATACATAGCCGAAGCTATTATA
1 ATCTGCACAC--TAAGTGCCAATACATAGCCGAAGCTATTCGA
* * *
33401660 ATCTCGCACAGTAAGTTCC-TTACATAGCCGAAGCTATCTCG-
1 ATCT-GCACACTAAGTGCCAATACATAGCCGAAGCTAT-TCGA
* * **
33401701 GTCTCGCACACTAAGTGCC-ATATATAGCTAAAGCTATTTCGA
1 ATCT-GCACACTAAGTGCCAATACATAGCCGAAGCTA-TTCGA
*
33401743 ATC-GCACACTAAGTG-CAATATATAGCCGAAGCTATCTCGA
1 ATCTGCACACTAAGTGCCAATACATAGCCGAAGCTAT-TCGA
33401783 AT-TGCACACTAAGTGCCA
1 ATCTGCACACTAAGTGCCA
33401801 TATATATATC
Statistics
Matches: 155, Mismatches: 17, Indels: 23
0.79 0.09 0.12
Matches are distributed among these distances:
39 2 0.01
40 50 0.32
41 51 0.33
42 48 0.31
44 4 0.03
ACGTcount: A:0.33, C:0.25, G:0.16, T:0.25
Consensus pattern (41 bp):
ATCTGCACACTAAGTGCCAATACATAGCCGAAGCTATTCGA
Found at i:33406443 original size:20 final size:20
Alignment explanation
Indices: 33406414--33406455 Score: 66
Period size: 20 Copynumber: 2.1 Consensus size: 20
33406404 AAAATCGATG
*
33406414 GATATATGATTTCTCGAAAT
1 GATATATGATTTCCCGAAAT
*
33406434 GATATGTGATTTCCCGAAAT
1 GATATATGATTTCCCGAAAT
33406454 GA
1 GA
33406456 ATGAGGTCCT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.33, C:0.12, G:0.19, T:0.36
Consensus pattern (20 bp):
GATATATGATTTCCCGAAAT
Found at i:33409025 original size:40 final size:40
Alignment explanation
Indices: 33408968--33409171 Score: 205
Period size: 40 Copynumber: 5.1 Consensus size: 40
33408958 TGAATGATAC
* * * * * *
33408968 CCGGGCTAAGTCTCGAAGGCATTTATGCTAGTGATTATGT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCAAGTGATTATAT
*
33409008 CCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCAATT-GTGCAAG-TGATTATAT
* ** *
33409048 CCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCAAGTGATTATAT
* ** *
33409088 CCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCAAGTGATTATAT
* ** *
33409128 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCAAGTGATTATAT
33409168 CCGG
1 CCGG
33409172 TTAAATCCCG
Statistics
Matches: 141, Mismatches: 19, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
39 3 0.02
40 133 0.94
41 5 0.04
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCAATTGTGCAAGTGATTATAT
Found at i:33409170 original size:80 final size:80
Alignment explanation
Indices: 33408968--33409171 Score: 230
Period size: 80 Copynumber: 2.5 Consensus size: 80
33408958 TGAATGATAC
* * * * *
33408968 CCGGGCTAAGTCTCGAAGGCATTTATGCTAGTGATTATGTCCGGGCTAAGACCCGAAGGCATTCG
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATATCCGGGCTAAGACCCGAAGGCATTCG
* *** *
33409033 TGCGAGTTGTTATAT
66 TGCAAGTTACCAAAT
* * ** *
33409048 CCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTACCAAATCCGGGCTAAGACCCGAAGGCAATT-
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATATCCGGGCTAAGACCCGAAGGC-ATTC
33409112 GTGCAAGTTACCAAAT
65 GTGCAAGTTACCAAAT
* * *
33409128 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATATCCGG
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATATCCGG
33409172 TTAAATCCCG
Statistics
Matches: 100, Mismatches: 23, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
80 97 0.97
81 3 0.03
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (80 bp):
CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATATCCGGGCTAAGACCCGAAGGCATTCG
TGCAAGTTACCAAAT
Found at i:33417214 original size:40 final size:40
Alignment explanation
Indices: 33417101--33417215 Score: 153
Period size: 40 Copynumber: 2.9 Consensus size: 40
33417091 TGAATGATAC
* * * *
33417101 CCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTG-TTATAT
*
33417141 CCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCAATT-GTGCAAGTTGTTATAT
33417181 CCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGT
33417216 GCAAGTTACC
Statistics
Matches: 67, Mismatches: 5, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
39 2 0.03
40 60 0.90
41 5 0.07
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGTTATAT
Found at i:33427757 original size:16 final size:18
Alignment explanation
Indices: 33427736--33427769 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
33427726 CTTCAAGAAG
33427736 CTCAAG-TCT-GTTCTGA
1 CTCAAGCTCTAGTTCTGA
33427752 CTCAAGCTCTAGTTCTGA
1 CTCAAGCTCTAGTTCTGA
33427770 TACAGCCTGA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 6 0.38
17 3 0.19
18 7 0.44
ACGTcount: A:0.21, C:0.26, G:0.18, T:0.35
Consensus pattern (18 bp):
CTCAAGCTCTAGTTCTGA
Found at i:33435752 original size:30 final size:30
Alignment explanation
Indices: 33435718--33435775 Score: 107
Period size: 30 Copynumber: 1.9 Consensus size: 30
33435708 GGATATAAAT
33435718 GTCATGACATTAGGGTTATTTAAGTTTAAC
1 GTCATGACATTAGGGTTATTTAAGTTTAAC
*
33435748 GTCATGACATTAGGGTTATTTGAGTTTA
1 GTCATGACATTAGGGTTATTTAAGTTTA
33435776 CGTGTAAGAC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.28, C:0.09, G:0.22, T:0.41
Consensus pattern (30 bp):
GTCATGACATTAGGGTTATTTAAGTTTAAC
Found at i:33438933 original size:80 final size:77
Alignment explanation
Indices: 33438849--33438994 Score: 184
Period size: 80 Copynumber: 1.9 Consensus size: 77
33438839 TATGGTAACC
* * *
33438849 CGCACCAAGGCCTACGGGACTTAACCCGGATATCACGATTTGCACAAATGCCTTCGGGTCTTAGC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAGCAC---TAGCACAAATGCCTTCGGGTCTTAAC
33438914 CCGGATAGAATGACT
63 CCGGATAGAATGACT
* * * * * *
33438929 CGCACGAATGCCTTCGGGTCTTAGCCCGGATAGCACTAGCACAATTGCCTTCGGGTCTTAACCCG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAGCACTAGCACAAATGCCTTCGGGTCTTAACCCG
33438994 G
66 G
33438995 TATAATTTCC
Statistics
Matches: 57, Mismatches: 9, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
77 27 0.47
80 30 0.53
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (77 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATAGCACTAGCACAAATGCCTTCGGGTCTTAACCCG
GATAGAATGACT
Found at i:33438939 original size:40 final size:36
Alignment explanation
Indices: 33438890--33438994 Score: 129
Period size: 40 Copynumber: 2.8 Consensus size: 36
33438880 ATCACGATTT
* *
33438890 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAG---CACTA
33438930 GCACGAATGCCTTCGGGTCTTAGCCCGGATAGCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAGCACTA
*
33438967 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
33438995 TATAATTTCC
Statistics
Matches: 60, Mismatches: 4, Indels: 5
0.87 0.06 0.07
Matches are distributed among these distances:
36 2 0.03
37 27 0.45
40 31 0.52
ACGTcount: A:0.22, C:0.30, G:0.26, T:0.23
Consensus pattern (36 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATAGCACTA
Found at i:33448441 original size:40 final size:40
Alignment explanation
Indices: 33448356--33448506 Score: 141
Period size: 40 Copynumber: 3.8 Consensus size: 40
33448346 AATTGAATGA
* * * *
33448356 TATCCGGGCTAAGCCCCGAAGTCAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
33448396 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
33448437 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
33448476 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
33448507 ACGTGGTTAT
Statistics
Matches: 92, Mismatches: 12, Indels: 14
0.78 0.10 0.12
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 80 0.87
41 3 0.03
42 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.27, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:33448520 original size:40 final size:40
Alignment explanation
Indices: 33448393--33448522 Score: 154
Period size: 40 Copynumber: 3.2 Consensus size: 40
33448383 ATGCTGGAAA
* * *
33448393 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * * ***
33448433 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGACA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
*
33448473 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
33448513 TTATATCCGG
1 TTATATCCGG
33448523 TTATATTCCG
Statistics
Matches: 72, Mismatches: 17, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
39 1 0.01
40 71 0.99
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:33448521 original size:80 final size:80
Alignment explanation
Indices: 33448355--33448522 Score: 207
Period size: 80 Copynumber: 2.1 Consensus size: 80
33448345 AAATTGAATG
* * *
33448355 ATATCCGGGCTAAGCCCCGAAGTCAATTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCA
33448420 ATTGTGCTAGTGGCT
66 ATTGTGCTAGTGGCT
* * * *
33448435 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGACATTCTATCCGGGCTAAGACCCGAAGG
1 ATATCCGGGCTAAGACCCGAAGGCAATT-ATGCTG-GAAATTATATCCGGGCTAAGACCCGAAGG
* *
33448498 CATTTGTGC-ACGTGGTT
64 CAATTGTGCTA-GTGGCT
33448515 ATATCCGG
1 ATATCCGG
33448523 TTATATTCCG
Statistics
Matches: 75, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
79 5 0.07
80 70 0.93
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCA
ATTGTGCTAGTGGCT
Found at i:33452147 original size:43 final size:43
Alignment explanation
Indices: 33452086--33452170 Score: 170
Period size: 43 Copynumber: 2.0 Consensus size: 43
33452076 GAGAGGGGAG
33452086 TAAGCATATAGCTTAGTAAGTACGTATGTAAATAATAAAAAAC
1 TAAGCATATAGCTTAGTAAGTACGTATGTAAATAATAAAAAAC
33452129 TAAGCATATAGCTTAGTAAGTACGTATGTAAATAATAAAAAA
1 TAAGCATATAGCTTAGTAAGTACGTATGTAAATAATAAAAAA
33452171 ATTATTAACA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 42 1.00
ACGTcount: A:0.49, C:0.08, G:0.14, T:0.28
Consensus pattern (43 bp):
TAAGCATATAGCTTAGTAAGTACGTATGTAAATAATAAAAAAC
Done.