Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr03 135709677
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 135709677
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 117 of 438
Found at i:34262251 original size:24 final size:24
Alignment explanation
Indices: 34262219--34262266 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
34262209 CTGAGAAGAA
34262219 GCTCTGTTGTATGCAAGTGATGAT
1 GCTCTGTTGTATGCAAGTGATGAT
34262243 GCTCTGTTGTATGCAAGTGATGAT
1 GCTCTGTTGTATGCAAGTGATGAT
34262267 TAAATCTTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.21, C:0.12, G:0.29, T:0.38
Consensus pattern (24 bp):
GCTCTGTTGTATGCAAGTGATGAT
Found at i:34263095 original size:28 final size:28
Alignment explanation
Indices: 34263045--34263100 Score: 76
Period size: 28 Copynumber: 2.0 Consensus size: 28
34263035 GACTCACACG
** * *
34263045 GGTAGAACACACGGTCGTGCCATTCTAA
1 GGTAGAACACACGCCCATACCATTCTAA
34263073 GGTAGAACACACGCCCATACCATTCTAA
1 GGTAGAACACACGCCCATACCATTCTAA
34263101 CAGGTTCGAG
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.32, C:0.29, G:0.20, T:0.20
Consensus pattern (28 bp):
GGTAGAACACACGCCCATACCATTCTAA
Found at i:34265769 original size:19 final size:19
Alignment explanation
Indices: 34265747--34265783 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
34265737 TGTGGACACA
34265747 TGACACGCCCGTGTCCCCC
1 TGACACGCCCGTGTCCCCC
*
34265766 TGACACGCTCGTGTCCCC
1 TGACACGCCCGTGTCCCC
34265784 AAGCTGTGTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.11, C:0.49, G:0.22, T:0.19
Consensus pattern (19 bp):
TGACACGCCCGTGTCCCCC
Found at i:34267111 original size:48 final size:48
Alignment explanation
Indices: 34267055--34267275 Score: 216
Period size: 48 Copynumber: 4.6 Consensus size: 48
34267045 TAAAGTACGA
* * *
34267055 ATGCCATGTCCCCGACATGGTCTTACA-T-GAATCCATATGTCATTC-CCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCA--CATATATCA-TCACCG
* * * * *
34267103 ATGCCATGTTCCAGACATGGTTTTACACTAGCACATATATCAACGCCA
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCACATATATCATCACCG
* *
34267151 ATGCCATGTCCCAAACATGGTCTTACACTGGCACATATATCATCACCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCACATATATCATCACCG
* * * * * * *
34267199 ATTCCATGTCCCAAACATGGTCTTATA-TAGGTACATATCTCATATACTG
1 ATGCCATGTCCCAGACATGGTCTTACACTA-GCACATATATCAT-CACCG
34267248 ATGCCATGTCCCAGACATGGTCTTACAC
1 ATGCCATGTCCCAGACATGGTCTTACAC
34267276 GAAATCTCAT
Statistics
Matches: 143, Mismatches: 24, Indels: 10
0.81 0.14 0.06
Matches are distributed among these distances:
47 2 0.01
48 111 0.78
49 28 0.20
50 2 0.01
ACGTcount: A:0.28, C:0.29, G:0.15, T:0.29
Consensus pattern (48 bp):
ATGCCATGTCCCAGACATGGTCTTACACTAGCACATATATCATCACCG
Found at i:34267218 original size:96 final size:97
Alignment explanation
Indices: 34267054--34267275 Score: 238
Period size: 96 Copynumber: 2.3 Consensus size: 97
34267044 ATAAAGTACG
* * * *
34267054 AATGCCATGTCCCCGACATGGTCTTACA-TGAATCCATATGTCATTCCCGATGCCATGTTCCAGA
1 AATGCCATGTCCCAGACATGGTCTTACACTGAA-CCATATATCATTCCCGATGCCATGTCCCAAA
* *
34267118 CATGGTTTTACACTA-GCACATATATCA-ACGCC
65 CATGGTCTTACA-TAGGCACATATATCATACACC
* * *
34267150 AATGCCATGTCCCAAACATGGTCTTACACTG-GCACATATATCA-TCACCGATTCCATGTCCCAA
1 AATGCCATGTCCCAGACATGGTCTTACACTGAAC-CATATATCATTC-CCGATGCCATGTCCCAA
* * * * *
34267213 ACATGGTCTTATATAGGTACATATCTCATATACT
64 ACATGGTCTTACATAGGCACATATATCATACACC
*
34267247 GATGCCATGTCCCAGACATGGTCTTACAC
1 AATGCCATGTCCCAGACATGGTCTTACAC
34267276 GAAATCTCAT
Statistics
Matches: 105, Mismatches: 16, Indels: 9
0.81 0.12 0.07
Matches are distributed among these distances:
95 5 0.05
96 69 0.66
97 31 0.30
ACGTcount: A:0.28, C:0.28, G:0.15, T:0.28
Consensus pattern (97 bp):
AATGCCATGTCCCAGACATGGTCTTACACTGAACCATATATCATTCCCGATGCCATGTCCCAAAC
ATGGTCTTACATAGGCACATATATCATACACC
Found at i:34274783 original size:46 final size:46
Alignment explanation
Indices: 34274716--34274844 Score: 222
Period size: 46 Copynumber: 2.8 Consensus size: 46
34274706 TGTAACCCGC
* * * *
34274716 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
34274762 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
34274808 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
34274845 TGCTCAACCA
Statistics
Matches: 79, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
46 79 1.00
ACGTcount: A:0.29, C:0.29, G:0.22, T:0.19
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:34274863 original size:46 final size:45
Alignment explanation
Indices: 34274724--34274863 Score: 140
Period size: 46 Copynumber: 3.0 Consensus size: 45
34274714 GCCCATAAGC
* ** * *
34274724 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTC-GCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCACCATCC-T-AGT
*** *
34274770 GAACTCGGACTCAACTCAACGAGTTCGGACATTC-GCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCACCATCC-T-AGT
34274816 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCTAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCTC-ACCATCCTAGT
34274862 GA
1 GA
34274864 CATGTCACTT
Statistics
Matches: 85, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
46 79 0.93
47 1 0.01
48 5 0.06
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (45 bp):
GAACTCGGACTCAACTCAACGAGTTCGGATGCTCACCATCCTAGT
Found at i:34280047 original size:52 final size:52
Alignment explanation
Indices: 34279969--34280074 Score: 212
Period size: 52 Copynumber: 2.0 Consensus size: 52
34279959 GCTATCGGTC
34279969 TTTTCTTCCAATTTCTAGTCTCAGCCTCTACCTTTTTCTTTTCTTTAAGTAA
1 TTTTCTTCCAATTTCTAGTCTCAGCCTCTACCTTTTTCTTTTCTTTAAGTAA
34280021 TTTTCTTCCAATTTCTAGTCTCAGCCTCTACCTTTTTCTTTTCTTTAAGTAA
1 TTTTCTTCCAATTTCTAGTCTCAGCCTCTACCTTTTTCTTTTCTTTAAGTAA
34280073 TT
1 TT
34280075 CTTCGGCCTT
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
52 54 1.00
ACGTcount: A:0.17, C:0.25, G:0.06, T:0.53
Consensus pattern (52 bp):
TTTTCTTCCAATTTCTAGTCTCAGCCTCTACCTTTTTCTTTTCTTTAAGTAA
Found at i:34282398 original size:93 final size:93
Alignment explanation
Indices: 34282285--34282456 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
34282275 CGCCCATAAG
* *
34282285 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
34282350 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
34282378 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
34282443 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
34282457 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:34282453 original size:46 final size:46
Alignment explanation
Indices: 34282278--34282453 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
34282268 TGTAACCCGC
* * *
34282278 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
34282324 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
34282374 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
34282417 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
34282454 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:34287882 original size:67 final size:67
Alignment explanation
Indices: 34287803--34287935 Score: 230
Period size: 67 Copynumber: 2.0 Consensus size: 67
34287793 CTATGAAACT
*
34287803 AGGACTCAACTTGCCTTTCCTACCGAATCTCCAAACCTTTCTCCATAGGGATACTTTCAAAAATA
1 AGGACTCAACTTGCCTTTCCTACCAAATCTCCAAACCTTTCTCCATAGGGATACTTTCAAAAATA
34287868 CG
66 CG
** *
34287870 AGGACTCAACTTGCCTTTCCTACCAAATCTTTAAACCTTTCTCCATGGGGATACTTTCAAAAATA
1 AGGACTCAACTTGCCTTTCCTACCAAATCTCCAAACCTTTCTCCATAGGGATACTTTCAAAAATA
34287935 C
66 C
34287936 TTTATCTCCC
Statistics
Matches: 62, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
67 62 1.00
ACGTcount: A:0.30, C:0.29, G:0.11, T:0.30
Consensus pattern (67 bp):
AGGACTCAACTTGCCTTTCCTACCAAATCTCCAAACCTTTCTCCATAGGGATACTTTCAAAAATA
CG
Found at i:34294079 original size:40 final size:39
Alignment explanation
Indices: 34294034--34294241 Score: 227
Period size: 40 Copynumber: 5.2 Consensus size: 39
34294024 CGGAATACAA
*
34294034 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* *
34294074 CCGGATATAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
34294114 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* ** * *
34294154 CCGGATGTAGTCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
** * * *
34294194 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
34294234 CCGGATAT
1 CCGGATAT
34294242 CATTCAATTG
Statistics
Matches: 144, Mismatches: 23, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
39 1 0.01
40 143 0.99
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.26
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:34294174 original size:80 final size:80
Alignment explanation
Indices: 34294034--34294241 Score: 256
Period size: 80 Copynumber: 2.6 Consensus size: 80
34294024 CGGAATACAA
* * *
34294034 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTTGCACAAATG
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTAGCACAAATG
*
34294099 CCTTCGGGTATTAGC
66 CCTTCGGGTATTAAC
* * * *
34294114 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGTC-ACTAGCACAATT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATATA-ACGACTAGCACAAAT
*
34294178 GCCTTCGGGTCTTAAC
65 GCCTTCGGGTATTAAC
** * ** * *
34294194 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGATAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAT
34294242 CATTCAATTG
Statistics
Matches: 109, Mismatches: 18, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
80 108 0.99
81 1 0.01
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.26
Consensus pattern (80 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTAGCACAAATG
CCTTCGGGTATTAAC
Found at i:34302094 original size:40 final size:39
Alignment explanation
Indices: 34302049--34302256 Score: 227
Period size: 40 Copynumber: 5.2 Consensus size: 39
34302039 CGGAATACAA
*
34302049 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* *
34302089 CCGGATATAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
34302129 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* ** * *
34302169 CCGGATGTAGTCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
** * * *
34302209 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
34302249 CCGGATAT
1 CCGGATAT
34302257 CATTCAATTG
Statistics
Matches: 144, Mismatches: 23, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
39 1 0.01
40 143 0.99
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.26
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:34302189 original size:80 final size:80
Alignment explanation
Indices: 34302049--34302256 Score: 256
Period size: 80 Copynumber: 2.6 Consensus size: 80
34302039 CGGAATACAA
* * *
34302049 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTTGCACAAATG
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTAGCACAAATG
*
34302114 CCTTCGGGTATTAGC
66 CCTTCGGGTATTAAC
* * * *
34302129 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGTC-ACTAGCACAATT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATATA-ACGACTAGCACAAAT
*
34302193 GCCTTCGGGTCTTAAC
65 GCCTTCGGGTATTAAC
** * ** * *
34302209 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGATAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAT
34302257 CATTCAATTG
Statistics
Matches: 109, Mismatches: 18, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
80 108 0.99
81 1 0.01
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.26
Consensus pattern (80 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTAGCACAAATG
CCTTCGGGTATTAAC
Found at i:34309943 original size:44 final size:43
Alignment explanation
Indices: 34309878--34309960 Score: 139
Period size: 44 Copynumber: 1.9 Consensus size: 43
34309868 CGTTGACATT
*
34309878 GATTTGAGATATCGTGTAAGACCGTGTCTGGGACATAGGTCTC
1 GATTTGAGATATCGTGTAAGACCATGTCTGGGACATAGGTCTC
*
34309921 GATTTGAGATTTACGTGTAAGACCATGTCTGGGACATAGG
1 GATTTGAGATAT-CGTGTAAGACCATGTCTGGGACATAGG
34309961 CATCGTATCT
Statistics
Matches: 37, Mismatches: 2, Indels: 1
0.93 0.05 0.03
Matches are distributed among these distances:
43 11 0.30
44 26 0.70
ACGTcount: A:0.25, C:0.14, G:0.30, T:0.30
Consensus pattern (43 bp):
GATTTGAGATATCGTGTAAGACCATGTCTGGGACATAGGTCTC
Found at i:34309994 original size:42 final size:42
Alignment explanation
Indices: 34309884--34310009 Score: 132
Period size: 44 Copynumber: 3.0 Consensus size: 42
34309874 CATTGATTTG
* * *
34309884 AGATATCGTGTAAGACCGTGTCTGGGACATAGGTC-TCGATTT
1 AGATTTCGTGTAAGACCATGTCTGGGACATAGG-CATCGATCT
34309926 GAGATTTACGTGTAAGACCATGTCTGGGACATAGGCATCGTATCT
1 -AGATTT-CGTGTAAGACCATGTCTGGGACATAGGCATCG-ATCT
* * *
34309971 -GATTTCGTGTAAGATCC-TATCTGGGATAGAGGCATCGAT
1 AGATTTCGTGTAAGA-CCATGTCTGGGACATAGGCATCGAT
34310010 ACTGAATTAC
Statistics
Matches: 73, Mismatches: 6, Indels: 10
0.82 0.07 0.11
Matches are distributed among these distances:
41 2 0.03
42 26 0.36
43 13 0.18
44 29 0.40
45 3 0.04
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (42 bp):
AGATTTCGTGTAAGACCATGTCTGGGACATAGGCATCGATCT
Found at i:34315376 original size:48 final size:48
Alignment explanation
Indices: 34315305--34315621 Score: 381
Period size: 48 Copynumber: 6.6 Consensus size: 48
34315295 TAAAGTACCA
* * * * *
34315305 ATGCCATGTCCCCGACATGGTCTTACA-T-GAATCCACATGTCATCGTCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCA--CATATATCATCGCCG
* * *
34315353 ATGCCATGTCACAGACATGGTCTTACATTGGCACATATATCATCGCCA
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCACATATATCATCGCCG
* *
34315401 ATGCCATGTCCCAGACATGGTCTTACACTGGCACATATATCATTGCTG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCACATATATCATCGCCG
34315449 ATGCCATGTCCCAGACATGGTCTTACACTGGCACATATATCATCGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCACATATATCATCGCCG
* * * *
34315497 ATGCCATGTCCCAGACATAGTTTTACACTGGCACATACATTATCGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCACATATATCATCGCCG
* * * * *
34315545 ATGCAATGTCCCAGACACGGTCTTACACAGGCACATATCTCAGAT-GCCA
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCACATATATC--ATCGCCG
*
34315594 ATGCCATGTCCCAGAAAAT-GTCTTACAC
1 ATGCCATGTCCCAG-ACATGGTCTTACAC
34315622 AAAATCTCAT
Statistics
Matches: 234, Mismatches: 30, Indels: 9
0.86 0.11 0.03
Matches are distributed among these distances:
48 202 0.86
49 26 0.11
50 6 0.03
ACGTcount: A:0.27, C:0.29, G:0.18, T:0.26
Consensus pattern (48 bp):
ATGCCATGTCCCAGACATGGTCTTACACTGGCACATATATCATCGCCG
Found at i:34332093 original size:29 final size:30
Alignment explanation
Indices: 34332060--34332119 Score: 79
Period size: 30 Copynumber: 2.0 Consensus size: 30
34332050 TCCTTTACTC
34332060 AAAC-TTTGCAAAAATTACA-TTTTGCCCCT
1 AAACTTTTGC-AAAATTACACTTTTGCCCCT
* *
34332089 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTTGCAAAATTACACTTTTGCCCCT
34332119 A
1 A
34332120 GGCTCAGGAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
29 11 0.41
30 16 0.59
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.38
Consensus pattern (30 bp):
AAACTTTTGCAAAATTACACTTTTGCCCCT
Found at i:34336412 original size:17 final size:18
Alignment explanation
Indices: 34336371--34336416 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 18
34336361 TCAGGCCGCG
* *
34336371 ATGGGCCGAAAGGGCCAT
1 ATGGGCCCAATGGGCCAT
*
34336389 GTGGGCCCAATGGGCC-T
1 ATGGGCCCAATGGGCCAT
34336406 ATGGGCCCAAT
1 ATGGGCCCAAT
34336417 TGGATAAGTT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
17 11 0.46
18 13 0.54
ACGTcount: A:0.22, C:0.26, G:0.37, T:0.15
Consensus pattern (18 bp):
ATGGGCCCAATGGGCCAT
Found at i:34336998 original size:27 final size:27
Alignment explanation
Indices: 34336632--34336997 Score: 497
Period size: 27 Copynumber: 13.6 Consensus size: 27
34336622 AAAGTACTCC
*
34336632 CGATTTATAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
34336659 C-AGTTTACAGAATTACTGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
34336686 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
** *
34336713 CGATTTGTAAAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
34336740 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
**
34336767 C-AGTTTACAGAATTACTATTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
* *
34336794 CGATTTATAGAATTACCGTTTTTCCC-
1 CGATTTACAGAATTACCGTTTTACCCT
* * *
34336820 CTAATTTACATAATTACCATTTTACCC-
1 C-GATTTACAGAATTACCGTTTTACCCT
* *
34336847 CGATTTACATAATTATCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
34336874 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
34336901 CGATTTACAGAATTACCATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
34336928 CGATTTATAGAATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
34336955 TGATTTACAGAATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
34336982 CGATTTACAAAATTAC
1 CGATTTACAGAATTAC
34336998 TAAAATACCC
Statistics
Matches: 300, Mismatches: 33, Indels: 12
0.87 0.10 0.03
Matches are distributed among these distances:
26 25 0.08
27 273 0.91
28 2 0.01
ACGTcount: A:0.28, C:0.23, G:0.09, T:0.40
Consensus pattern (27 bp):
CGATTTACAGAATTACCGTTTTACCCT
Found at i:34337034 original size:81 final size:81
Alignment explanation
Indices: 34336632--34337041 Score: 272
Period size: 81 Copynumber: 5.1 Consensus size: 81
34336622 AAAGTACTCC
* * ***** *
34336632 CGATTTATAGAATTACCGTTTTACCCTC-AGTTTACAGAATTACTGTTTTACCCTCGATTTACAG
1 CGATTTACAGAATTACCGTTTTACCCTCGA-TTTACAAAATTACCAAAATACCCTCGATTTATAG
***
34336696 AATTACCGTTTTACCCT
65 AATTACCGCAATACCCT
** * * **** *
34336713 CGATTTGTAAAATTACCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTC-AGTTTACAG
1 CGATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACCAAAATACCCTCGA-TTTATAG
*****
34336777 AATTACTATTTTACCCT
65 AATTACCGCAATACCCT
* * * * *** * *
34336794 CGATTTATAGAATTACCGTTTTTCCC-CTAATTTACATAATTACCATTTTACCC-CGATTTACAT
1 CGATTTACAGAATTACCGTTTTACCCTC-GATTTACAAAATTACCAAAATACCCTCGATTTATAG
* ***
34336857 AATTATCGTTTTACCCT
65 AATTACCGCAATACCCT
* ***
34336874 CGATTTACAGAATTACCGTTTTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTATAGA
1 CGATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACCAAAATACCCTCGATTTATAGA
* ***
34336939 ATTACTGTTTTACCCT
66 ATTACCGCAATACCCT
* * * * * *
34336955 TGATTTACAGAATTACTGTTTTACCCTCGATTTACAAAATTACTAAAATACCCTTGGTTTGT-GA
1 CGATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACCAAAATACCCTCGATTTATAG-
34337019 AATTACCGCAATACCCT
65 AATTACCGCAATACCCT
*
34337036 CAATTT
1 CGATTT
34337042 GTAAAACTAC
Statistics
Matches: 283, Mismatches: 39, Indels: 14
0.84 0.12 0.04
Matches are distributed among these distances:
80 71 0.25
81 211 0.75
82 1 0.00
ACGTcount: A:0.28, C:0.23, G:0.10, T:0.40
Consensus pattern (81 bp):
CGATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACCAAAATACCCTCGATTTATAGA
ATTACCGCAATACCCT
Found at i:34338335 original size:9 final size:9
Alignment explanation
Indices: 34338323--34338399 Score: 64
Period size: 9 Copynumber: 7.9 Consensus size: 9
34338313 TTTGATAAAC
34338323 ATGATATGT
1 ATGATATGT
*
34338332 ATGATATGCAC
1 ATGATATG--T
34338343 ATGATATGT
1 ATGATATGT
*
34338352 ATGATATGCAC
1 ATGATATG--T
*
34338363 ATGACATGT
1 ATGATATGT
*
34338372 ATGATATGCAC
1 ATGATATG--T
34338383 ATGATATGT
1 ATGATATGT
34338392 ATGATATG
1 ATGATATG
34338400 CACACGAGAT
Statistics
Matches: 54, Mismatches: 8, Indels: 12
0.73 0.11 0.16
Matches are distributed among these distances:
9 31 0.57
11 23 0.43
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:34338348 original size:11 final size:11
Alignment explanation
Indices: 34338332--34338403 Score: 66
Period size: 11 Copynumber: 7.1 Consensus size: 11
34338322 CATGATATGT
34338332 ATGATATGCAC
1 ATGATATGCAC
*
34338343 ATGATATG--T
1 ATGATATGCAC
34338352 ATGATATGCAC
1 ATGATATGCAC
* *
34338363 ATGACATG--T
1 ATGATATGCAC
34338372 ATGATATGCAC
1 ATGATATGCAC
*
34338383 ATGATATG--T
1 ATGATATGCAC
34338392 ATGATATGCAC
1 ATGATATGCAC
34338403 A
1 A
34338404 CGAGATGTTC
Statistics
Matches: 47, Mismatches: 8, Indels: 12
0.70 0.12 0.18
Matches are distributed among these distances:
9 23 0.49
11 24 0.51
ACGTcount: A:0.36, C:0.12, G:0.19, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:34338411 original size:20 final size:20
Alignment explanation
Indices: 34338321--34338403 Score: 157
Period size: 20 Copynumber: 4.2 Consensus size: 20
34338311 ATTTTGATAA
34338321 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
34338341 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
34338361 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
34338381 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
34338401 ACA
1 ACA
34338404 CGAGATGTTC
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 61 1.00
ACGTcount: A:0.36, C:0.12, G:0.19, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:34338514 original size:24 final size:24
Alignment explanation
Indices: 34338458--34338647 Score: 269
Period size: 24 Copynumber: 8.0 Consensus size: 24
34338448 GAGGAAGTGA
34338458 AAAAGGGCTTATGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
* *
34338481 TAAAGGGCTTATGCCCTAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
34338505 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
34338529 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
*
34338553 AAAAGGGCTTACGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
* *
34338576 TAAAGGGCTTATGCCCCAGTTATA
1 AAAAGGGCTTATGCCCCAGTTATC
* *
34338600 AAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
*
34338624 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
34338648 ATGATAAAGC
Statistics
Matches: 151, Mismatches: 12, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
23 42 0.28
24 98 0.65
25 11 0.07
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:34338527 original size:47 final size:47
Alignment explanation
Indices: 34338458--34338626 Score: 284
Period size: 47 Copynumber: 3.6 Consensus size: 47
34338448 GAGGAAGTGA
*
34338458 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCTAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATC
*
34338505 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTAT-TAAAGGGCTTATGCCCCAGTTATC
* *
34338553 AAAAGGGCTTACGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATA
1 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATC
*
34338600 AAAAGGGCTTTTGCCCCAGTTATTAAA
1 AAAAGGGCTTATGCCCCAGTTATTAAA
34338627 AGAGGCTAGG
Statistics
Matches: 114, Mismatches: 7, Indels: 2
0.93 0.06 0.02
Matches are distributed among these distances:
47 70 0.61
48 44 0.39
ACGTcount: A:0.30, C:0.22, G:0.21, T:0.27
Consensus pattern (47 bp):
AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATC
Found at i:34338581 original size:71 final size:71
Alignment explanation
Indices: 34338457--34338647 Score: 269
Period size: 71 Copynumber: 2.7 Consensus size: 71
34338447 GGAGGAAGTG
* * *
34338457 AAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCTAGTTATCAAAAGGGCTTATGCCCC
1 AAAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTACGCCCCAGTTATCAAAAGGGCTTATGCCCC
34338522 AGTTAT
66 AGTTAT
* *
34338528 CAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTACGCCCCAGTTAT-TAAAGGGCTTATGCCC
1 AAAAAGGGCTTATGCCCCAGTTAT-AAAAGGGCTTACGCCCCAGTTATCAAAAGGGCTTATGCCC
34338592 CAGTTAT
65 CAGTTAT
* *
34338599 AAAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAAGGGCTTATGCCCCAGTTA-TAAAAG-GGCTTACGCC-CCAGTTAT
34338648 ATGATAAAGC
Statistics
Matches: 108, Mismatches: 8, Indels: 7
0.88 0.07 0.06
Matches are distributed among these distances:
71 76 0.70
72 32 0.30
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.27
Consensus pattern (71 bp):
AAAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTACGCCCCAGTTATCAAAAGGGCTTATGCCCC
AGTTAT
Found at i:34338875 original size:31 final size:31
Alignment explanation
Indices: 34338840--34338903 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
34338830 CGTTTACAGT
*
34338840 AAAGGCTTCGGCCCAGTAATATGAAATTTGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
34338871 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
34338902 AA
1 AA
34338904 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:34344566 original size:3 final size:3
Alignment explanation
Indices: 34344558--34344613 Score: 112
Period size: 3 Copynumber: 18.7 Consensus size: 3
34344548 ATTCTAAAAA
34344558 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
34344606 ATT ATT AT
1 ATT ATT AT
34344614 GTGTGTTTTC
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 53 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:34347349 original size:2 final size:2
Alignment explanation
Indices: 34347342--34347371 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
34347332 AATCATGGAC
*
34347342 AT AT AT AT AT AT AT AT AT AT AT AT GT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
34347372 TCGATTATAT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (2 bp):
AT
Found at i:34347599 original size:13 final size:13
Alignment explanation
Indices: 34347581--34347605 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
34347571 TATGTTGCCA
34347581 TCGATATGTGATT
1 TCGATATGTGATT
34347594 TCGATATGTGAT
1 TCGATATGTGAT
34347606 GTGCGAGTAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.08, G:0.24, T:0.44
Consensus pattern (13 bp):
TCGATATGTGATT
Found at i:34347646 original size:101 final size:101
Alignment explanation
Indices: 34347495--34347694 Score: 276
Period size: 101 Copynumber: 2.0 Consensus size: 101
34347485 TATGAATTCT
* **
34347495 GATATGTGATGTGTGAGTAAGACCATGGCATCGATGTGTGATTCCTATATATGTGCGCGAGTAAG
1 GATATGTGATGTGCGAGTAAGACCATGGCATCGACATGTGATTCCTATATATGTGCGCGAGTAAG
*
34347560 ACCACGTTTAATATGTTGCCATCGATATGTGATTTC
66 ACCACGTTTAATATGTTGCCATCGAAATGTGATTTC
* *
34347596 GATATGTGATGTGCGAGTAAGACCATGGCATCGACATGTGATT-CTGATATATGTGTGCGAGTCA
1 GATATGTGATGTGCGAGTAAGACCATGGCATCGACATGTGATTCCT-ATATATGTGCGCGAGTAA
** * * * *
34347660 GTTCACGTTTTATTTGTTGGCATCTAAATGTGATT
65 GACCACGTTTAATATGTTGCCATCGAAATGTGATT
34347695 CTAATATATG
Statistics
Matches: 86, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
100 2 0.02
101 84 0.98
ACGTcount: A:0.25, C:0.14, G:0.26, T:0.35
Consensus pattern (101 bp):
GATATGTGATGTGCGAGTAAGACCATGGCATCGACATGTGATTCCTATATATGTGCGCGAGTAAG
ACCACGTTTAATATGTTGCCATCGAAATGTGATTTC
Found at i:34354598 original size:99 final size:93
Alignment explanation
Indices: 34354469--34354691 Score: 229
Period size: 99 Copynumber: 2.4 Consensus size: 93
34354459 ACACATCAAA
* * * * *
34354469 GTCGATGCTATGTCCTAGACATGCTCTTACACTGACTCTTATATATCGAGGCTAATGCCATGTCC
1 GTCGATGCCATGTCCCAGACATGGTCTTACACTGAC-C---CATATC-AAGCTAATGCCATGTCC
* *
34354534 CATACACAGT-GTACACTGGCTCTCAT-CTGTCGG
61 CAGACACAGTCGTACACTGGCTCTCATAATGT--G
* *
34354567 TGTCGATGCCATGTCCCAGACATGGTCTTACATTGACCCATATCAAGCTGATGCCATGTCCCAGA
1 -GTCGATGCCATGTCCCAGACATGGTCTTACACTGACCCATATCAAGCTAATGCCATGTCCCAGA
** *
34354632 CATGGTCTTACACTGGCTCTCATAATGTG
65 CACAGTCGTACACTGGCTCTCATAATGTG
*
34354661 GTCGATG-CATCTCCCAGACAT-GTCTTACACT
1 GTCGATGCCATGTCCCAGACATGGTCTTACACT
34354692 AGCACACATA
Statistics
Matches: 108, Mismatches: 14, Indels: 12
0.81 0.10 0.09
Matches are distributed among these distances:
91 9 0.08
92 13 0.12
93 7 0.06
94 23 0.21
95 20 0.19
96 3 0.03
98 1 0.01
99 32 0.30
ACGTcount: A:0.23, C:0.28, G:0.19, T:0.30
Consensus pattern (93 bp):
GTCGATGCCATGTCCCAGACATGGTCTTACACTGACCCATATCAAGCTAATGCCATGTCCCAGAC
ACAGTCGTACACTGGCTCTCATAATGTG
Found at i:34358102 original size:44 final size:42
Alignment explanation
Indices: 34358026--34358130 Score: 113
Period size: 44 Copynumber: 2.5 Consensus size: 42
34358016 TGATAAGTGT
* ** ** *
34358026 TTTCATGTAAGACCGCGTCTGGGATGTTGGCATCA-ACTTATGA
1 TTTCGTGTAAGACCATGTCTGGGACATCGGCATCATA-TT-TGA
34358069 TTTACGTGTAAGACCATGTCTGGGACATCGGCATCATATTTGA
1 TTT-CGTGTAAGACCATGTCTGGGACATCGGCATCATATTTGA
*
34358112 TTTCGTGTAAGACCCTGTC
1 TTTCGTGTAAGACCATGTC
34358131 AAGGACAGTG
Statistics
Matches: 53, Mismatches: 7, Indels: 5
0.82 0.11 0.08
Matches are distributed among these distances:
42 15 0.28
43 9 0.17
44 28 0.53
45 1 0.02
ACGTcount: A:0.23, C:0.20, G:0.24, T:0.33
Consensus pattern (42 bp):
TTTCGTGTAAGACCATGTCTGGGACATCGGCATCATATTTGA
Found at i:34360482 original size:50 final size:50
Alignment explanation
Indices: 34360422--34360637 Score: 202
Period size: 50 Copynumber: 4.3 Consensus size: 50
34360412 ATCACACATT
** * *
34360422 TGGCCGAATATACAAGATCAAATATATTATCACATATATGCATACCTATG
1 TGGCCGAATATACAAGATCAAATATAACATCACATATGTGCATACCTATA
* * * ** * *
34360472 TGGCCAAATATGCAAGACCAAACCTAACATCACATATGTGCTTACTTATA
1 TGGCCGAATATACAAGATCAAATATAACATCACATATGTGCATACCTATA
* * * *
34360522 TGGCTGAATATACAA-ATTCAAATATAACGTCACATTTGTGCATACCTTTA
1 TGGCCGAATATACAAGA-TCAAATATAACATCACATATGTGCATACCTATA
* * * * * *
34360572 T-ACTTGAATATACAAGATCCAATATAACATCATATATGTACATACCTATG
1 TGGC-CGAATATACAAGATCAAATATAACATCACATATGTGCATACCTATA
*
34360622 TGGCCGAATATTCAAG
1 TGGCCGAATATACAAG
34360638 GTCATTTAGC
Statistics
Matches: 129, Mismatches: 33, Indels: 8
0.76 0.19 0.05
Matches are distributed among these distances:
49 2 0.02
50 125 0.97
51 2 0.02
ACGTcount: A:0.38, C:0.19, G:0.12, T:0.30
Consensus pattern (50 bp):
TGGCCGAATATACAAGATCAAATATAACATCACATATGTGCATACCTATA
Found at i:34363382 original size:66 final size:69
Alignment explanation
Indices: 34363236--34363391 Score: 185
Period size: 66 Copynumber: 2.3 Consensus size: 69
34363226 CTAACCGATT
34363236 TGTCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACA
1 TGTCTCGTAGCTCTCTTGTCTACATGGTG--CTTCACTTGGAATCACGCATGCGACCTAGCTACA
** *
34363301 TTTATC
64 TACAGC
* * *
34363307 TTTCACGTAGCTCTCTTGTCTACAT-G-G-TTCACTTGGAATCACGCATGTGACCTAGCTAC-TA
1 TGTCTCGTAGCTCTCTTGTCTACATGGTGCTTCACTTGGAATCACGCATGCGACCTAGCTACATA
*
34363368 CAGGG
66 CA-GC
*
34363373 TGTCTCGTAGCTTTCTTGT
1 TGTCTCGTAGCTCTCTTGT
34363392 ACACATGATG
Statistics
Matches: 74, Mismatches: 10, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
65 2 0.03
66 47 0.64
69 1 0.01
70 1 0.01
71 23 0.31
ACGTcount: A:0.18, C:0.26, G:0.20, T:0.36
Consensus pattern (69 bp):
TGTCTCGTAGCTCTCTTGTCTACATGGTGCTTCACTTGGAATCACGCATGCGACCTAGCTACATA
CAGC
Found at i:34368922 original size:29 final size:29
Alignment explanation
Indices: 34368880--34368961 Score: 155
Period size: 29 Copynumber: 2.8 Consensus size: 29
34368870 ATTATTTTTT
34368880 TTTCCAGCATGCACACTTAGTGCCATATA
1 TTTCCAGCATGCACACTTAGTGCCATATA
34368909 TTTCCAGCATGCACACTTAGTGCCATATA
1 TTTCCAGCATGCACACTTAGTGCCATATA
*
34368938 TTTCCAGCACGCACACTTAGTGCC
1 TTTCCAGCATGCACACTTAGTGCC
34368962 TATCTCGTCA
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 52 1.00
ACGTcount: A:0.26, C:0.30, G:0.15, T:0.29
Consensus pattern (29 bp):
TTTCCAGCATGCACACTTAGTGCCATATA
Found at i:34376826 original size:29 final size:29
Alignment explanation
Indices: 34376784--34376865 Score: 155
Period size: 29 Copynumber: 2.8 Consensus size: 29
34376774 TTATTTTTTT
34376784 TTTCCAGCATGCACACTTAGTGCCATATA
1 TTTCCAGCATGCACACTTAGTGCCATATA
34376813 TTTCCAGCATGCACACTTAGTGCCATATA
1 TTTCCAGCATGCACACTTAGTGCCATATA
*
34376842 TTTCCAGCACGCACACTTAGTGCC
1 TTTCCAGCATGCACACTTAGTGCC
34376866 TATCTCGTCA
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 52 1.00
ACGTcount: A:0.26, C:0.30, G:0.15, T:0.29
Consensus pattern (29 bp):
TTTCCAGCATGCACACTTAGTGCCATATA
Found at i:34381014 original size:29 final size:29
Alignment explanation
Indices: 34380972--34381053 Score: 155
Period size: 29 Copynumber: 2.8 Consensus size: 29
34380962 TTATTTTTTT
34380972 TTTCCAGCATGCACACTTAGTGCCATATA
1 TTTCCAGCATGCACACTTAGTGCCATATA
34381001 TTTCCAGCATGCACACTTAGTGCCATATA
1 TTTCCAGCATGCACACTTAGTGCCATATA
*
34381030 TTTCCAGCACGCACACTTAGTGCC
1 TTTCCAGCATGCACACTTAGTGCC
34381054 TATCTCGTCA
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 52 1.00
ACGTcount: A:0.26, C:0.30, G:0.15, T:0.29
Consensus pattern (29 bp):
TTTCCAGCATGCACACTTAGTGCCATATA
Found at i:34385204 original size:29 final size:29
Alignment explanation
Indices: 34385162--34385243 Score: 155
Period size: 29 Copynumber: 2.8 Consensus size: 29
34385152 ATTTTTTTTT
34385162 TTTCCAGCATGCACACTTAGTGCCATATA
1 TTTCCAGCATGCACACTTAGTGCCATATA
34385191 TTTCCAGCATGCACACTTAGTGCCATATA
1 TTTCCAGCATGCACACTTAGTGCCATATA
*
34385220 TTTCCAGCACGCACACTTAGTGCC
1 TTTCCAGCATGCACACTTAGTGCC
34385244 TATCTCGTCA
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 52 1.00
ACGTcount: A:0.26, C:0.30, G:0.15, T:0.29
Consensus pattern (29 bp):
TTTCCAGCATGCACACTTAGTGCCATATA
Found at i:34401173 original size:50 final size:50
Alignment explanation
Indices: 34401058--34401236 Score: 126
Period size: 50 Copynumber: 3.6 Consensus size: 50
34401048 TTTGGCTAAG
** * *
34401058 TATACAAGATCCAATATAATATCACATATATGCATACCTATGTGGCCAAA
1 TATACAAGATAAAATATAACATCACATATATGCATACCTATATGGCCAAA
* * * * **
34401108 TATGCAAGATAAAATATAACATCACATATGTGCTTACTTATATGGCTGAA
1 TATACAAGATAAAATATAACATCACATATATGCATACCTATATGGCCAAA
* * * * * * * ** *
34401158 TATACAA-ATTCAAATACAATATGACATTTGTGCATACCTTTATACCCGAA
1 TATACAAGA-TAAAATATAACATCACATATATGCATACCTATATGGCCAAA
** * *
34401208 TATACAAGATCTAATATAAAATCATATAT
1 TATACAAGATAAAATATAACATCACATAT
34401237 GTACAAACCT
Statistics
Matches: 99, Mismatches: 28, Indels: 4
0.76 0.21 0.03
Matches are distributed among these distances:
49 1 0.01
50 97 0.98
51 1 0.01
ACGTcount: A:0.42, C:0.17, G:0.09, T:0.31
Consensus pattern (50 bp):
TATACAAGATAAAATATAACATCACATATATGCATACCTATATGGCCAAA
Found at i:34406320 original size:28 final size:28
Alignment explanation
Indices: 34406280--34406388 Score: 137
Period size: 28 Copynumber: 3.9 Consensus size: 28
34406270 TGGAAAGTAG
*
34406280 TTGGTCCTGATGGGCCATATGAATGTGA
1 TTGGGCCTGATGGGCCATATGAATGTGA
*
34406308 TTGGGCCTGATGGGCCATATGAATGTGG
1 TTGGGCCTGATGGGCCATATGAATGTGA
* * **
34406336 TTGGGCCTGATGGGCCATGTGAACGAAA
1 TTGGGCCTGATGGGCCATATGAATGTGA
* *
34406364 TTGGGCCTAAATGGGCCAAATGAAT
1 TTGGGCCT-GATGGGCCATATGAAT
34406389 AAGCGTAGAT
Statistics
Matches: 69, Mismatches: 11, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
28 57 0.83
29 12 0.17
ACGTcount: A:0.24, C:0.16, G:0.34, T:0.27
Consensus pattern (28 bp):
TTGGGCCTGATGGGCCATATGAATGTGA
Found at i:34406874 original size:107 final size:106
Alignment explanation
Indices: 34406688--34407241 Score: 571
Period size: 107 Copynumber: 5.2 Consensus size: 106
34406678 TAATAAAGTG
* * * * *
34406688 AAATTACTGAAATACCTTTGATTTATATAATTACCGAAACACCATCGATTTGTAAAATTA-TCGA
1 AAATTACCGAAATACCCTCGATTTGTAAAATTACCGAAACACCATCGATTTGTAAAATTACT-GA
34406752 AATACCCTCAATTGTGAAATTACTAAAATACTCTCAATTTGTA
65 AATACCCTCAATTGTGAAATTACTAAAATAC-CTCAATTTGTA
* * * * *
34406795 AAATTATCGAAATACCCTCGATTTGTGAAATTATCGAAACACCTTCGATTTGTAAAATTACTAAA
1 AAATTACCGAAATACCCTCGATTTGTAAAATTACCGAAACACCATCGATTTGTAAAATTACTGAA
*
34406860 ATACCCTCAATTGTGAAATTACTAAAATACCCTCGATTTGTA
66 ATACCCTCAATTGTGAAATTACTAAAATA-CCTCAATTTGTA
* * * * * *
34406902 AAATTACCAAAATACCCTC-AATTGTGAAATTACCGAAATACCCTCGATTTGTGAAATTACTGAA
1 AAATTACCGAAATACCCTCGATTTGTAAAATTACCGAAACACCATCGATTTGTAAAATTACTGAA
* * *
34406966 ATACCCTCGATTTGTGAAATTA-TCAAAACACCTTCAATTTTTA
66 ATACCCTC-AATTGTGAAATTACT-AAAATACC-TCAATTTGTA
* ** * ** * * * *
34407009 AAATTACCAAAATACTTTTGATTTGTAAAATTACTAAAATACCCTCGA-TTGTGAAATTACTTAA
1 AAATTACCGAAATACCCTCGATTTGTAAAATTACCGAAACACCATCGATTTGTAAAATTACTGAA
* * * * *
34407073 CTACCCTCGATTTGTAAAATTA-TCAAAATACTCTCGATTTGTG
66 ATACCCTC-AATTGTGAAATTACT-AAAATAC-CTCAATTTGTA
* *
34407116 AAATTACCGAAACACCCTCAATTTGTAAAATTACCGAAACACCATCGATTTGTAAAATTA-TCGA
1 AAATTACCGAAATACCCTCGATTTGTAAAATTACCGAAACACCATCGATTTGTAAAATTACT-GA
* * * *
34407180 AATACCCTCAATTTGTAAAATTACCAAAACACCCCTAATTTGTA
65 AATACCCTCAA-TTGTGAAATTACTAAAATACCTC-AATTTGTA
* *
34407224 AAATTATCGAAATCCCCT
1 AAATTACCGAAATACCCT
34407242 TGTAGCAAAA
Statistics
Matches: 376, Mismatches: 59, Indels: 23
0.82 0.13 0.05
Matches are distributed among these distances:
106 50 0.13
107 242 0.64
108 84 0.22
ACGTcount: A:0.39, C:0.19, G:0.09, T:0.32
Consensus pattern (106 bp):
AAATTACCGAAATACCCTCGATTTGTAAAATTACCGAAACACCATCGATTTGTAAAATTACTGAA
ATACCCTCAATTGTGAAATTACTAAAATACCTCAATTTGTA
Found at i:34407213 original size:27 final size:27
Alignment explanation
Indices: 34406688--34407229 Score: 491
Period size: 27 Copynumber: 20.2 Consensus size: 27
34406678 TAATAAAGTG
** * * *
34406688 AAATTACTGAAATACCTTTGATTTATA
1 AAATTACCAAAATACCCTCGATTTGTA
* * * *
34406715 TAATTACCGAAACACCATCGATTTGTA
1 AAATTACCAAAATACCCTCGATTTGTA
* * * *
34406742 AAATTATCGAAATACCCTC-AATTGTG
1 AAATTACCAAAATACCCTCGATTTGTA
* * *
34406768 AAATTACTAAAATACTCTCAATTTGTA
1 AAATTACCAAAATACCCTCGATTTGTA
* * *
34406795 AAATTATCGAAATACCCTCGATTTGTG
1 AAATTACCAAAATACCCTCGATTTGTA
* * * *
34406822 AAATTATCGAAACACCTTCGATTTGTA
1 AAATTACCAAAATACCCTCGATTTGTA
* * *
34406849 AAATTACTAAAATACCCTC-AATTGTG
1 AAATTACCAAAATACCCTCGATTTGTA
*
34406875 AAATTACTAAAATACCCTCGATTTGTA
1 AAATTACCAAAATACCCTCGATTTGTA
* *
34406902 AAATTACCAAAATACCCTC-AATTGTG
1 AAATTACCAAAATACCCTCGATTTGTA
* *
34406928 AAATTACCGAAATACCCTCGATTTGTG
1 AAATTACCAAAATACCCTCGATTTGTA
** *
34406955 AAATTACTGAAATACCCTCGATTTGTG
1 AAATTACCAAAATACCCTCGATTTGTA
* * * * *
34406982 AAATTATCAAAACACCTTCAATTTTTA
1 AAATTACCAAAATACCCTCGATTTGTA
** *
34407009 AAATTACCAAAATACTTTTGATTTGTA
1 AAATTACCAAAATACCCTCGATTTGTA
* *
34407036 AAATTACTAAAATACCCTCGA-TTGTG
1 AAATTACCAAAATACCCTCGATTTGTA
** *
34407062 AAATTACTTAACTACCCTCGATTTGTA
1 AAATTACCAAAATACCCTCGATTTGTA
* * *
34407089 AAATTATCAAAATACTCTCGATTTGTG
1 AAATTACCAAAATACCCTCGATTTGTA
* * *
34407116 AAATTACCGAAACACCCTCAATTTGTA
1 AAATTACCAAAATACCCTCGATTTGTA
* * *
34407143 AAATTACCGAAACACCATCGATTTGTA
1 AAATTACCAAAATACCCTCGATTTGTA
* * *
34407170 AAATTATCGAAATACCCTCAATTTGTA
1 AAATTACCAAAATACCCTCGATTTGTA
* *
34407197 AAATTACCAAAACACCC-CTAATTTGTA
1 AAATTACCAAAATACCCTC-GATTTGTA
34407224 AAATTA
1 AAATTA
34407230 TCGAAATCCC
Statistics
Matches: 425, Mismatches: 85, Indels: 10
0.82 0.16 0.02
Matches are distributed among these distances:
26 91 0.21
27 334 0.79
ACGTcount: A:0.39, C:0.19, G:0.09, T:0.33
Consensus pattern (27 bp):
AAATTACCAAAATACCCTCGATTTGTA
Found at i:34407255 original size:81 final size:80
Alignment explanation
Indices: 34406716--34407235 Score: 287
Period size: 80 Copynumber: 6.5 Consensus size: 80
34406706 TGATTTATAT
* * * * * * * * ** *
34406716 AATTACCGAAACACCATCGATTTGTAAAATTATCGAAATACCCTCAATTGTGAAATTA-CTAAAA
1 AATTACCAAAACACCCTCAATTTGTAAAATTACCGAAACACCATCGATAGAAAAATTATC-GAAA
*
34406780 TACTCTCAATTTGTAA
65 TACCCTCAATTTGTAA
* * * * * * * * * *
34406796 AATTATCGAAATACCCTCGATTTGTGAAATTATCGAAACACCTTCGATTTGTAAAATTA-CTAAA
1 AATTACCAAAACACCCTCAATTTGTAAAATTACCGAAACACCATCGA-TAGAAAAATTATC-GAA
*
34406860 ATACCCTCAA-TTGTGA
64 ATACCCTCAATTTGTAA
* * * * * * * * ** *
34406876 AATTACTAAAATACCCTCGATTTGTAAAATTACCAAAATACCCTCAATTGTGAAATTACCGAAAT
1 AATTACCAAAACACCCTCAATTTGTAAAATTACCGAAACACCATCGATAGAAAAATTATCGAAAT
* *
34406941 ACCCTCGATTTGTGA
66 ACCCTCAATTTGTAA
** * * * * * * * *** * *
34406956 AATTACTGAAATACCCTCGATTTGTGAAATTATCAAAACACCTTCAATTTTTAAAATTACCAAAA
1 AATTACCAAAACACCCTCAATTTGTAAAATTACCGAAACACCATCGA-TAGAAAAATTATCGAAA
** **
34407021 TACTTTTGATTTGTAA
65 TACCCTCAATTTGTAA
* * * * ** * * * *
34407037 AATTACTAAAATACCCTCGA-TTGTGAAATTA-CTTAACTACCCTCGATTTGTAAAATTATCAAA
1 AATTACCAAAACACCCTCAATTTGTAAAATTACCGAAAC-ACCATCGA-TAGAAAAATTATCGAA
* * *
34407100 ATACTCTCGATTTGTGA
64 ATACCCTCAATTTGTAA
* * *
34407117 AATTACCGAAACACCCTCAATTTGTAAAATTACCGAAACACCATCGATTTGTAAAATTATCGAAA
1 AATTACCAAAACACCCTCAATTTGTAAAATTACCGAAACACCATCGA-TAGAAAAATTATCGAAA
34407182 TACCCTCAATTTGTAA
65 TACCCTCAATTTGTAA
*
34407198 AATTACCAAAACACCC-CTAATTTGTAAAATTATCGAAA
1 AATTACCAAAACACCCTC-AATTTGTAAAATTACCGAAA
34407236 TCCCCTTGTA
Statistics
Matches: 374, Mismatches: 58, Indels: 15
0.84 0.13 0.03
Matches are distributed among these distances:
79 25 0.07
80 195 0.52
81 150 0.40
82 4 0.01
ACGTcount: A:0.40, C:0.19, G:0.09, T:0.32
Consensus pattern (80 bp):
AATTACCAAAACACCCTCAATTTGTAAAATTACCGAAACACCATCGATAGAAAAATTATCGAAAT
ACCCTCAATTTGTAA
Found at i:34407280 original size:27 final size:27
Alignment explanation
Indices: 34407222--34407281 Score: 75
Period size: 27 Copynumber: 2.2 Consensus size: 27
34407212 CCCTAATTTG
* *
34407222 TAAAATTATCGAAATCCCCTTGTAGCA
1 TAAAATTATCGAAATACCCTTATAGCA
* * *
34407249 AAAAATTGTCGAAATACCCTTATAGTA
1 TAAAATTATCGAAATACCCTTATAGCA
34407276 TAAAAT
1 TAAAAT
34407282 GACCGACATA
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.43, C:0.17, G:0.10, T:0.30
Consensus pattern (27 bp):
TAAAATTATCGAAATACCCTTATAGCA
Found at i:34407874 original size:27 final size:27
Alignment explanation
Indices: 34407815--34407874 Score: 66
Period size: 27 Copynumber: 2.2 Consensus size: 27
34407805 AGATGGGCTA
* * * *
34407815 GGCCCAACTGATTTTGTTATGGGCTGT
1 GGCCCAAATGATATTGTAACGGGCTGT
* *
34407842 GACCCAAATGATATTGTAACGGGCTTT
1 GGCCCAAATGATATTGTAACGGGCTGT
34407869 GGCCCA
1 GGCCCA
34407875 TATATGCTCT
Statistics
Matches: 26, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.22, C:0.22, G:0.27, T:0.30
Consensus pattern (27 bp):
GGCCCAAATGATATTGTAACGGGCTGT
Found at i:34421842 original size:686 final size:687
Alignment explanation
Indices: 34420518--34421885 Score: 2684
Period size: 686 Copynumber: 2.0 Consensus size: 687
34420508 GGGGAAAAAG
34420518 AAAAATAGTCGAATAGTCGATTTACACTGTTCGTTGATATCCGAGGTAAGTCTTTAAGCAATTAA
1 AAAAATAGTCGAATAGTCGATTTACACTGTTCGTTGATATCCGAGGTAAGTCTTTAAGCAATTAA
34420583 ACATTGTTAATTTTGAATGTAACTTAATTTACTATACTGATTTGGAATTCATAGATTTATAGTAA
66 ACATTGTTAATTTTGAATGTAACTTAATTTACTATACTGATTTGGAATTCATAGATTTATAGTAA
* *
34420648 AGTTAGCCGAATTGTAACGCCCCCGTACCCAAAACTGTCGCCAGAGTAGAGCACAAGGTGTTAAC
131 AGTTAGCCGAATTGTAACGCCCCCGTACCCAAAACCGTCACCAGAGTAGAGCACAAGGTGTTAAC
34420713 GGACTTAATTCATTAATTAAATAGTGTCAAACAATTTATTTTAGAATTTCCAGACAAGCTGGCTA
196 GGACTTAATTCATTAATTAAATAGTGTCAAACAATTTATTTTAGAATTTCCAGACAAGCTGGCTA
34420778 ACTGCATCACAGTCGCTAAAAAAAATCATATCTCGAGTTACAAAAGTTGAAATCCAATTCCGTAA
261 ACTGCATCACAGTCGCTAAAAAAAATCATATCTCGAGTTACAAAAGTTGAAATCCAATTCCGTAA
*
34420843 TTTTTTCCCGAAACTAGACTCAGATATCTACTTACTAATTGTTTTCTAGAATTTTTGGTCAGGCC
326 TTTTTTCCCGAAACTAGACTCAAATATCTACTTACTAATTGTTTTCTAGAATTTTTGGTCAGGCC
34420908 AATTAGTACAATTTATTAGTTAAAGTCTCCCCTATTTCAGGGTTCGGCTACTCTGAACCCTGTGC
391 AATTAGTACAATTTATTAGTTAAAGTCTCCCCTATTTCAGGGTTCGGCTACTCTGAACCCTGTGC
34420973 ACTACGAATCAAATTTATTCCTGTACAGAAGTCCAATGACTATGACGTTTATTTATATTAAAAAT
456 ACTACGAATCAAATTTATTCCTGTACAGAAGTCCAATGACTATGACGTTTATTTATATTAAAAAT
34421038 ATACTCAATAAGGAATCCATACATATAAAATTTGAGTCCTAATTATTTTTACACAATTTATGGTG
521 ATACTCAATAAGGAATCCATACATATAAAATTTGAGTCCTAATTATTTTTACACAATTTATGGTG
34421103 AATTTATAAAGTCAGAACAGGCGATCCAGAAATTGCTCTGACCCTGTTTCACCAAAACGTAAATA
586 AATTTATAAAGTCAGAACAGGCGATCCAGAAATTGCTCTGACCCTGTTTCACCAAAACGTAAATA
34421168 TCTCATAAAATAAAAGTTTTTTTACCTATTTTTCACC
651 TCTCATAAAATAAAAGTTTTTTTACCTATTTTTCACC
34421205 AAAAATAGTCGAATAGTCGATTTACACTGTTCGTTGATATCCGAGGTAAGTCTTTAAGCAATTAA
1 AAAAATAGTCGAATAGTCGATTTACACTGTTCGTTGATATCCGAGGTAAGTCTTTAAGCAATTAA
34421270 ACATTGTTAATTTTGAATGTAACTTAATTTACTATACTGATTTGGAATTCATAGATTTATAGTAA
66 ACATTGTTAATTTTGAATGTAACTTAATTTACTATACTGATTTGGAATTCATAGATTTATAGTAA
34421335 AGTTAGCCGAATTGTAACGCCCCCGTACCCAAAACCGTCACCAGAGTAGAGCACAAGGTGTTAAC
131 AGTTAGCCGAATTGTAACGCCCCCGTACCCAAAACCGTCACCAGAGTAGAGCACAAGGTGTTAAC
34421400 GGACTTAATTCATTAATTAAATAGTGTCAAACAATTTATTTTAGAATTTCCAGACAAGCTGGCTA
196 GGACTTAATTCATTAATTAAATAGTGTCAAACAATTTATTTTAGAATTTCCAGACAAGCTGGCTA
34421465 ACTGCATCACAGTCGCTAAAAAAAATCATATCTCGAGTTACAAAAGTTGAAATCCAATTCCGT-A
261 ACTGCATCACAGTCGCTAAAAAAAATCATATCTCGAGTTACAAAAGTTGAAATCCAATTCCGTAA
34421529 TTTTTTCCCGAAACTAGACTCAAATATCTACTTACTAATTGTTTTCTAGAATTTTTGGTCAGGCC
326 TTTTTTCCCGAAACTAGACTCAAATATCTACTTACTAATTGTTTTCTAGAATTTTTGGTCAGGCC
34421594 AATTAGTACAATTTATTAGTTAAAGTCTCCCCTATTTCAGGGTTCGGCTACTCTGAACCCTGTGC
391 AATTAGTACAATTTATTAGTTAAAGTCTCCCCTATTTCAGGGTTCGGCTACTCTGAACCCTGTGC
34421659 ACTACGAATCAAATTTATTCCTGTACAGAAGTCCAATGACTATGACGTTTATTTATATTAAAAAT
456 ACTACGAATCAAATTTATTCCTGTACAGAAGTCCAATGACTATGACGTTTATTTATATTAAAAAT
* *
34421724 ATACTCAATAAGGAATTCATACATATAAAATTTGAGTCCTAATTATTTTTAGACAATTTATGGTG
521 ATACTCAATAAGGAATCCATACATATAAAATTTGAGTCCTAATTATTTTTACACAATTTATGGTG
34421789 AATTTATAAAGTCAGAACAGGCGATCCAGAAATTGCTCTGACCCTGTTTCACCAAAACGTAAATA
586 AATTTATAAAGTCAGAACAGGCGATCCAGAAATTGCTCTGACCCTGTTTCACCAAAACGTAAATA
34421854 TCTCATAAAATAAAAGTTTTTTTACCTATTTT
651 TCTCATAAAATAAAAGTTTTTTTACCTATTTT
34421886 GTTTCTTCCA
Statistics
Matches: 676, Mismatches: 5, Indels: 1
0.99 0.01 0.00
Matches are distributed among these distances:
686 355 0.53
687 321 0.47
ACGTcount: A:0.35, C:0.18, G:0.14, T:0.34
Consensus pattern (687 bp):
AAAAATAGTCGAATAGTCGATTTACACTGTTCGTTGATATCCGAGGTAAGTCTTTAAGCAATTAA
ACATTGTTAATTTTGAATGTAACTTAATTTACTATACTGATTTGGAATTCATAGATTTATAGTAA
AGTTAGCCGAATTGTAACGCCCCCGTACCCAAAACCGTCACCAGAGTAGAGCACAAGGTGTTAAC
GGACTTAATTCATTAATTAAATAGTGTCAAACAATTTATTTTAGAATTTCCAGACAAGCTGGCTA
ACTGCATCACAGTCGCTAAAAAAAATCATATCTCGAGTTACAAAAGTTGAAATCCAATTCCGTAA
TTTTTTCCCGAAACTAGACTCAAATATCTACTTACTAATTGTTTTCTAGAATTTTTGGTCAGGCC
AATTAGTACAATTTATTAGTTAAAGTCTCCCCTATTTCAGGGTTCGGCTACTCTGAACCCTGTGC
ACTACGAATCAAATTTATTCCTGTACAGAAGTCCAATGACTATGACGTTTATTTATATTAAAAAT
ATACTCAATAAGGAATCCATACATATAAAATTTGAGTCCTAATTATTTTTACACAATTTATGGTG
AATTTATAAAGTCAGAACAGGCGATCCAGAAATTGCTCTGACCCTGTTTCACCAAAACGTAAATA
TCTCATAAAATAAAAGTTTTTTTACCTATTTTTCACC
Found at i:34427724 original size:40 final size:38
Alignment explanation
Indices: 34427677--34427816 Score: 120
Period size: 37 Copynumber: 3.7 Consensus size: 38
34427667 GAATCCAGTC
* *
34427677 ACCAGCACAAAACCTGCGAGACTTTAAGCTCAAATATAAT
1 ACCAGCACAAAGCCTGCGAGA-TTTAACCT-AAATATAAT
* * * *
34427717 ACCAGCACTAGGCCTGCGGGATTTAACCTAGATATAAT
1 ACCAGCACAAAGCCTGCGAGATTTAACCTAAATATAAT
* * * *** *
34427755 A-CAGCACGAAGCCTGCGGGATGTAACCCGGATATATT
1 ACCAGCACAAAGCCTGCGAGATTTAACCTAAATATAAT
* *
34427792 ACCAGCACAAAGCCTGTGGGATTTA
1 ACCAGCACAAAGCCTGCGAGATTTA
34427817 TCCCGGATAT
Statistics
Matches: 84, Mismatches: 15, Indels: 4
0.82 0.15 0.04
Matches are distributed among these distances:
37 31 0.37
38 29 0.35
39 7 0.08
40 17 0.20
ACGTcount: A:0.34, C:0.24, G:0.21, T:0.21
Consensus pattern (38 bp):
ACCAGCACAAAGCCTGCGAGATTTAACCTAAATATAAT
Found at i:34427807 original size:38 final size:38
Alignment explanation
Indices: 34427677--34427865 Score: 164
Period size: 38 Copynumber: 4.9 Consensus size: 38
34427667 GAATCCAGTC
* * * **
34427677 ACCAGCACAAAACCTGCGAGACTTTAAGCTCAAATATAAT
1 ACCAGCACAAAGCCTGCGGGA-TTTAA-CCCGGATATAAT
* * **
34427717 ACCAGCACTAGGCCTGCGGGATTTAACCTAGATATAAT
1 ACCAGCACAAAGCCTGCGGGATTTAACCCGGATATAAT
* * *
34427755 A-CAGCACGAAGCCTGCGGGATGTAACCCGGATATATT
1 ACCAGCACAAAGCCTGCGGGATTTAACCCGGATATAAT
* *
34427792 ACCAGCACAAAGCCTGTGGGATTTATCCCGGATATAAT
1 ACCAGCACAAAGCCTGCGGGATTTAACCCGGATATAAT
* * * * *
34427830 TCCAGCATATAGCCTGTGGGTCTTTAAGCCCGGATA
1 ACCAGCACAAAGCCTGCGGG-ATTTAA-CCCGGATA
34427866 CACATCAAAT
Statistics
Matches: 123, Mismatches: 23, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
37 31 0.25
38 58 0.47
39 9 0.07
40 25 0.20
ACGTcount: A:0.32, C:0.24, G:0.21, T:0.23
Consensus pattern (38 bp):
ACCAGCACAAAGCCTGCGGGATTTAACCCGGATATAAT
Found at i:34433381 original size:20 final size:20
Alignment explanation
Indices: 34433356--34433414 Score: 100
Period size: 20 Copynumber: 3.0 Consensus size: 20
34433346 TAAATATGGT
34433356 ATGTATGATATGCACATGAA
1 ATGTATGATATGCACATGAA
* *
34433376 ATGTATGTTATGCACATGAT
1 ATGTATGATATGCACATGAA
34433396 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
34433415 GGTAATCATA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.36, C:0.10, G:0.20, T:0.34
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:34433555 original size:25 final size:24
Alignment explanation
Indices: 34433464--34433559 Score: 140
Period size: 24 Copynumber: 4.0 Consensus size: 24
34433454 GAGGAAGTGA
34433464 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
34433488 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
* *
34433512 AAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
*
34433536 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
34433560 ATGATAAAGC
Statistics
Matches: 66, Mismatches: 4, Indels: 3
0.90 0.05 0.04
Matches are distributed among these distances:
24 55 0.83
25 11 0.17
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:34433841 original size:31 final size:31
Alignment explanation
Indices: 34433751--34433845 Score: 154
Period size: 31 Copynumber: 3.1 Consensus size: 31
34433741 CGTTTACAGT
*
34433751 AAAGGCTTCGGCCCAGTAACATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
34433782 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
** *
34433813 AAAGGCTTCGGCCCAGTGTTATGGAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
34433844 AA
1 AA
34433846 CATGAAAAGG
Statistics
Matches: 60, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 60 1.00
ACGTcount: A:0.37, C:0.17, G:0.24, T:0.22
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:34445365 original size:43 final size:43
Alignment explanation
Indices: 34445317--34445428 Score: 206
Period size: 43 Copynumber: 2.6 Consensus size: 43
34445307 CCGGCATTAC
*
34445317 GCCTGCTAGGCACGAAGGCTCGAATACACATCACCGGCACAAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACAAA
*
34445360 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACAAA
34445403 GCCTGCTAGGCACGAAGGCCCGAATA
1 GCCTGCTAGGCACGAAGGCCCGAATA
34445429 TAATACCAGC
Statistics
Matches: 67, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
43 67 1.00
ACGTcount: A:0.30, C:0.33, G:0.26, T:0.11
Consensus pattern (43 bp):
GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACAAA
Found at i:34445469 original size:38 final size:38
Alignment explanation
Indices: 34445421--34445528 Score: 128
Period size: 38 Copynumber: 2.8 Consensus size: 38
34445411 GGCACGAAGG
* * *
34445421 CCCGAATATAATACCAGCACTAGGCCTGCGGGATTTAT
1 CCCGGATATAATACCAGCACTAAGCCTGCGGGATTTAA
**
34445459 CCCGGATATAATACCATTA-TGAAGCCTGCGGGATTTAA
1 CCCGGATATAATACCAGCACT-AAGCCTGCGGGATTTAA
** *
34445497 CCCGGATATTTTACCAGCACGAAGCCTGCGGG
1 CCCGGATATAATACCAGCACTAAGCCTGCGGG
34445529 TCTTTAAGAC
Statistics
Matches: 58, Mismatches: 10, Indels: 4
0.81 0.14 0.06
Matches are distributed among these distances:
37 1 0.02
38 57 0.98
ACGTcount: A:0.28, C:0.26, G:0.23, T:0.23
Consensus pattern (38 bp):
CCCGGATATAATACCAGCACTAAGCCTGCGGGATTTAA
Found at i:34450379 original size:42 final size:43
Alignment explanation
Indices: 34450332--34450436 Score: 113
Period size: 43 Copynumber: 2.5 Consensus size: 43
34450322 GTGTGGTTTT
** *
34450332 GTGTAAGACCATGTCTGGGACATTGGCA-TCATATGAGATTAC
1 GTGTAAGACCATGTCTGGGACAAAGGCATTCATATGAGATAAC
* * * *
34450374 GTGTAAGACCCTGTCTAGGACAAAGGCATTGATATGTGATAAC
1 GTGTAAGACCATGTCTGGGACAAAGGCATTCATATGAGATAAC
* * *
34450417 ATGTAAGATCATATCTGGGA
1 GTGTAAGACCATGTCTGGGA
34450437 TATGGTATTG
Statistics
Matches: 50, Mismatches: 12, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
42 24 0.48
43 26 0.52
ACGTcount: A:0.31, C:0.15, G:0.26, T:0.28
Consensus pattern (43 bp):
GTGTAAGACCATGTCTGGGACAAAGGCATTCATATGAGATAAC
Found at i:34450423 original size:43 final size:42
Alignment explanation
Indices: 34450333--34450424 Score: 103
Period size: 42 Copynumber: 2.2 Consensus size: 42
34450323 TGTGGTTTTG
* ** * *
34450333 TGTAAGACCATGTCTGGGACATTGGCATCATATGAGATTACG
1 TGTAAGACCATGTCTAGGACAAAGGCATCATATGAGATAACA
* * *
34450375 TGTAAGACCCTGTCTAGGACAAAGGCATTGATATGTGATAACA
1 TGTAAGACCATGTCTAGGACAAAGGCA-TCATATGAGATAACA
34450418 TGTAAGA
1 TGTAAGA
34450425 TCATATCTGG
Statistics
Matches: 41, Mismatches: 8, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
42 23 0.56
43 18 0.44
ACGTcount: A:0.33, C:0.15, G:0.25, T:0.27
Consensus pattern (42 bp):
TGTAAGACCATGTCTAGGACAAAGGCATCATATGAGATAACA
Found at i:34452033 original size:19 final size:19
Alignment explanation
Indices: 34451992--34452034 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
34451982 GGTCACCTAT
* *
34451992 TAAAACATTTTGTTCCACT
1 TAAAACATTTTGGTCCACA
34452011 TAAAACAATTTTGGT-CACA
1 TAAAAC-ATTTTGGTCCACA
34452030 TAAAA
1 TAAAA
34452035 TTAAAAAATA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 14 0.67
20 7 0.33
ACGTcount: A:0.42, C:0.16, G:0.07, T:0.35
Consensus pattern (19 bp):
TAAAACATTTTGGTCCACA
Found at i:34455709 original size:48 final size:48
Alignment explanation
Indices: 34455638--34456016 Score: 668
Period size: 48 Copynumber: 7.9 Consensus size: 48
34455628 AAATATATGC
34455638 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATACGT
1 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATACGT
34455686 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATACGT
1 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATACGT
* *
34455734 ATATGTGGTAAAGCCGAATGACTAATGTGAAATATGTATGAGATAGGT
1 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATACGT
*
34455782 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGT
1 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATACGT
*
34455830 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGT
1 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATACGT
* *
34455878 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGT
1 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATACGT
*
34455926 ATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATACGT
1 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATACGT
* * *
34455974 ATATGTGGTAAAGCCGAAGGGCTAGTGTGAAATATGTAGGAGA
1 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGA
34456017 CGTGTGTATT
Statistics
Matches: 321, Mismatches: 10, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
48 321 1.00
ACGTcount: A:0.36, C:0.07, G:0.28, T:0.29
Consensus pattern (48 bp):
ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATACGT
Found at i:34456303 original size:37 final size:37
Alignment explanation
Indices: 34456158--34456302 Score: 191
Period size: 37 Copynumber: 3.9 Consensus size: 37
34456148 GGAAATATAT
* *
34456158 TCCGGGTAAGACCCGATGATTACGTGCGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* * *
34456195 TCCGGGGAAGACTCGATGACTACATGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
34456232 TCCGGGTAAGACCCGATGACTACGTGTCGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* * * *
34456269 TCCAGGTAAGACCAGATAACTTCGTGTGGAGATT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATT
34456303 TCATCTGAGC
Statistics
Matches: 93, Mismatches: 15, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
37 93 1.00
ACGTcount: A:0.26, C:0.19, G:0.30, T:0.26
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:34457629 original size:40 final size:40
Alignment explanation
Indices: 34457576--34457897 Score: 457
Period size: 40 Copynumber: 8.0 Consensus size: 40
34457566 TTGAGAGTTA
* *
34457576 TATAGCCGGGCTAAGTCCCAAAGAGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
* *
34457616 TATATCCGGGCTAAATCCCGAAGAGCATTCGTGCTAGTGAT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG-T
*
34457657 ATATAGCCGGGCTAAG-CCCGAAGAGCATTCGTGCTGGTGT
1 -TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
* *
34457697 TATATCCGGGCTAAGTCCCGAAGAGCATTTGTGCTAGTGAT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG-T
* *
34457738 ATATAGCCGGGCTAAGCCCCGAAGAGCATTCGTGCTGGTGT
1 -TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
* * *
34457779 TATATCCAGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGA
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
*
34457819 TATATCTGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
* * *
34457859 TATATCCGGGCTAGGTCCCGAAGAGCAATCATGCTGGTG
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG
34457898 ATGTGTATTC
Statistics
Matches: 250, Mismatches: 27, Indels: 10
0.87 0.09 0.03
Matches are distributed among these distances:
39 14 0.06
40 163 0.65
41 25 0.10
42 48 0.19
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.25
Consensus pattern (40 bp):
TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
Found at i:34457799 original size:82 final size:82
Alignment explanation
Indices: 34457574--34457899 Score: 541
Period size: 82 Copynumber: 4.0 Consensus size: 82
34457564 AATTGAGAGT
* *
34457574 TATATAGCCGGGCTAAGTCCCAAAGAGCATTCGTGCTGGTGTTATATCCGGGCTAAATCCCGAAG
1 TATATAGCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAG
34457639 AGCATTCGTGCTAGTGA
66 AGCATTCGTGCTAGTGA
34457656 TATATAGCCGGGCTAAG-CCCGAAGAGCATTCGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAG
1 TATATAGCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAG
*
34457720 AGCATTTGTGCTAGTGA
66 AGCATTCGTGCTAGTGA
* *
34457737 TATATAGCCGGGCTAAGCCCCGAAGAGCATTCGTGCTGGTGTTATATCCAGGCTAAGTCCCGAAG
1 TATATAGCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAG
34457802 AGCATTCGTGCTAGTGA
66 AGCATTCGTGCTAGTGA
* *
34457819 TATAT--CTGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATATCCGGGCTAGGTCCCGAAG
1 TATATAGCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAG
* * *
34457882 AGCAATCATGCTGGTGA
66 AGCATTCGTGCTAGTGA
34457899 T
1 T
34457900 GTGTATTCGG
Statistics
Matches: 231, Mismatches: 12, Indels: 4
0.94 0.05 0.02
Matches are distributed among these distances:
80 69 0.30
81 78 0.34
82 84 0.36
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.26
Consensus pattern (82 bp):
TATATAGCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAG
AGCATTCGTGCTAGTGA
Found at i:34458111 original size:25 final size:25
Alignment explanation
Indices: 34458061--34458111 Score: 59
Period size: 25 Copynumber: 2.0 Consensus size: 25
34458051 TGTGTAACAA
* *
34458061 CAAATGAATAGGGGCACTATGTGTG
1 CAAATGAATAGAGGCACTATGAGTG
*
34458086 CAAATGATTAGAGGCACTGA-GAGTG
1 CAAATGAATAGAGGCACT-ATGAGTG
34458111 C
1 C
34458112 GAGTTCTTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
25 21 0.95
26 1 0.05
ACGTcount: A:0.33, C:0.14, G:0.31, T:0.22
Consensus pattern (25 bp):
CAAATGAATAGAGGCACTATGAGTG
Found at i:34461556 original size:48 final size:48
Alignment explanation
Indices: 34461485--34461673 Score: 333
Period size: 48 Copynumber: 3.9 Consensus size: 48
34461475 ATAAATATAT
34461485 GTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATAC
1 GTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATAC
*
34461533 GTATATGTGGTAAAGCAGAATGGCTAATGTGAAATATGTATGAGATAC
1 GTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATAC
*
34461581 GTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATAC
1 GTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATAC
* * *
34461629 GTATATGTGGTAAAGCCGAAGGGCTAGTGTGAAATATGTAGGAGA
1 GTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGA
34461674 CGTGTGTATA
Statistics
Matches: 136, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 136 1.00
ACGTcount: A:0.35, C:0.07, G:0.30, T:0.28
Consensus pattern (48 bp):
GTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATAC
Found at i:34461960 original size:37 final size:37
Alignment explanation
Indices: 34461815--34461959 Score: 227
Period size: 37 Copynumber: 3.9 Consensus size: 37
34461805 GGAAATATAT
* *
34461815 TCCGGGTAAGACCCGATGATTATGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
34461852 TTCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
34461889 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* * *
34461926 TCCGGGTAAGACCAGATAACTTCGTGTGGAGATT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATT
34461960 TCATCTGAGC
Statistics
Matches: 100, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 100 1.00
ACGTcount: A:0.24, C:0.17, G:0.32, T:0.28
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:34463241 original size:30 final size:30
Alignment explanation
Indices: 34463206--34463266 Score: 113
Period size: 30 Copynumber: 2.0 Consensus size: 30
34463196 AAAATAATTG
34463206 TACAAATGAAAACAAACAAAATCATTAAAA
1 TACAAATGAAAACAAACAAAATCATTAAAA
*
34463236 TACAAATGAAAATAAACAAAATCATTAAAA
1 TACAAATGAAAACAAACAAAATCATTAAAA
34463266 T
1 T
34463267 GGATTAACAC
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.66, C:0.11, G:0.03, T:0.20
Consensus pattern (30 bp):
TACAAATGAAAACAAACAAAATCATTAAAA
Found at i:34464574 original size:24 final size:26
Alignment explanation
Indices: 34464538--34464586 Score: 75
Period size: 24 Copynumber: 1.9 Consensus size: 26
34464528 TATTGGTTTT
34464538 TTATTTTAATTTATTTTT-GTTTTTGG
1 TTATTTT-ATTTATTTTTGGTTTTTGG
34464564 TTATTTT-TTTATTTTTGGTTTTT
1 TTATTTTATTTATTTTTGGTTTTT
34464587 CTCTAGCTAA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
24 9 0.41
25 6 0.27
26 7 0.32
ACGTcount: A:0.12, C:0.00, G:0.10, T:0.78
Consensus pattern (26 bp):
TTATTTTATTTATTTTTGGTTTTTGG
Found at i:34467426 original size:27 final size:27
Alignment explanation
Indices: 34467403--34467798 Score: 522
Period size: 27 Copynumber: 14.7 Consensus size: 27
34467393 TTTAGTTTAC
* *
34467403 AAAATTACCAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATACCCTTGGTTTGT
*
34467430 AAATTTACCAAAATACCCTTGGTTTGT
1 AAAATTACCAAAATACCCTTGGTTTGT
* **
34467457 AAAATTACTAAAATACCCTTGGTTTAC
1 AAAATTACCAAAATACCCTTGGTTTGT
*
34467484 AAAATTACCAAAATACCCTTAGTTTGT
1 AAAATTACCAAAATACCCTTGGTTTGT
* **
34467511 AAAATTACTAAAATACCCTTGGTTTAC
1 AAAATTACCAAAATACCCTTGGTTTGT
* *
34467538 AAAATTACCAAAATACCCCTGGATTGT
1 AAAATTACCAAAATACCCTTGGTTTGT
34467565 AAAATTACCAAAATACCCTTGGTTTGT
1 AAAATTACCAAAATACCCTTGGTTTGT
*
34467592 AAAATTACCAGAATACCCTTGGTTTGT
1 AAAATTACCAAAATACCCTTGGTTTGT
* * * **
34467619 AAAATTACTAAAATACCGTTAGTTTAC
1 AAAATTACCAAAATACCCTTGGTTTGT
*
34467646 AAAATTACCAAAATACCCCTGGTTTGT
1 AAAATTACCAAAATACCCTTGGTTTGT
*
34467673 AAGATTACCAAAATACCCTTGGTTTGT
1 AAAATTACCAAAATACCCTTGGTTTGT
* **
34467700 AAAATTACTAAAATACCCTTGGTTTAC
1 AAAATTACCAAAATACCCTTGGTTTGT
* *
34467727 AAAATTACCAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATACCCTTGGTTTGT
* * **
34467754 AAAATTACTAAAATACCCTCGACTTGT
1 AAAATTACCAAAATACCCTTGGTTTGT
*
34467781 AAAATTACCAAAGTACCC
1 AAAATTACCAAAATACCC
34467799 CCAATTTACA
Statistics
Matches: 315, Mismatches: 54, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 315 1.00
ACGTcount: A:0.39, C:0.20, G:0.09, T:0.31
Consensus pattern (27 bp):
AAAATTACCAAAATACCCTTGGTTTGT
Found at i:34467811 original size:27 final size:27
Alignment explanation
Indices: 34467398--34467840 Score: 152
Period size: 27 Copynumber: 16.4 Consensus size: 27
34467388 AATACTTTAG
* *
34467398 TTTACAAAATTACCAAAATACCCCTAG
1 TTTACAAAATTACCAAAATACCCCCAA
** * ****
34467425 TTTGTAAATTTACCAAAATACCCTTGG
1 TTTACAAAATTACCAAAATACCCCCAA
** * ****
34467452 TTTGTAAAATTACTAAAATACCCTTGG
1 TTTACAAAATTACCAAAATACCCCCAA
** *
34467479 TTTACAAAATTACCAAAATACCCTTAG
1 TTTACAAAATTACCAAAATACCCCCAA
** * ****
34467506 TTTGTAAAATTACTAAAATACCCTTGG
1 TTTACAAAATTACCAAAATACCCCCAA
**
34467533 TTTACAAAATTACCAAAATACCCCTGGA
1 TTTACAAAATTACCAAAATACCCC-CAA
****
34467561 TTGT--AAAATTACCAAAATACCCTTGG
1 TT-TACAAAATTACCAAAATACCCCCAA
** * ****
34467587 TTTGTAAAATTACCAGAATACCCTTGG
1 TTTACAAAATTACCAAAATACCCCCAA
** * *** *
34467614 TTTGTAAAATTACTAAAATACCGTTAG
1 TTTACAAAATTACCAAAATACCCCCAA
***
34467641 TTTACAAAATTACCAAAATACCCCTGG
1 TTTACAAAATTACCAAAATACCCCCAA
** * ****
34467668 TTTGTAAGATTACCAAAATACCCTTGG
1 TTTACAAAATTACCAAAATACCCCCAA
** * ****
34467695 TTTGTAAAATTACTAAAATACCCTTGG
1 TTTACAAAATTACCAAAATACCCCCAA
* *
34467722 TTTACAAAATTACCAAAATACCCCTAG
1 TTTACAAAATTACCAAAATACCCCCAA
** * * *
34467749 TTTGTAAAATTACTAAAATACCCTCGA
1 TTTACAAAATTACCAAAATACCCCCAA
* ** *
34467776 CTTGTAAAATTACCAAAGTACCCCCAA
1 TTTACAAAATTACCAAAATACCCCCAA
*** *
34467803 TTTACAAAATTACCATTTTACCCCCGA
1 TTTACAAAATTACCAAAATACCCCCAA
34467830 TTTACAAAATT
1 TTTACAAAATT
34467841 TTTGAAATAC
Statistics
Matches: 347, Mismatches: 65, Indels: 8
0.83 0.15 0.02
Matches are distributed among these distances:
25 1 0.00
26 3 0.01
27 339 0.98
28 3 0.01
29 1 0.00
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.32
Consensus pattern (27 bp):
TTTACAAAATTACCAAAATACCCCCAA
Found at i:34467826 original size:81 final size:81
Alignment explanation
Indices: 34467397--34467817 Score: 599
Period size: 81 Copynumber: 5.2 Consensus size: 81
34467387 GAATACTTTA
*
34467397 GTTTACAAAATTACCAAAATACCCCTAGTTTGTAAATTTACCAAAATACCCTTGGTTTGTAAAAT
1 GTTTACAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTTGGTTTGTAAAAT
34467462 TACTAAAATACCCTTG
66 TACTAAAATACCCTTG
* * **
34467478 GTTTACAAAATTACCAAAATACCCTTAGTTTGTAAAATTACTAAAATACCCTTGGTTTACAAAAT
1 GTTTACAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTTGGTTTGTAAAAT
* *
34467543 TACCAAAATACCCCTG
66 TACTAAAATACCCTTG
* ** * * *
34467559 GATTGTAAAATTACCAAAATACCCTTGGTTTGTAAAATTACCAGAATACCCTTGGTTTGTAAAAT
1 GTTTACAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTTGGTTTGTAAAAT
* *
34467624 TACTAAAATACCGTTA
66 TACTAAAATACCCTTG
* *
34467640 GTTTACAAAATTACCAAAATACCCCTGGTTTGTAAGATTACCAAAATACCCTTGGTTTGTAAAAT
1 GTTTACAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTTGGTTTGTAAAAT
34467705 TACTAAAATACCCTTG
66 TACTAAAATACCCTTG
* * **
34467721 GTTTACAAAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAATACCCTCGACTTGTAAAAT
1 GTTTACAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTTGGTTTGTAAAAT
* * ***
34467786 TACCAAAGTACCCCCA
66 TACTAAAATACCCTTG
*
34467802 ATTTACAAAATTACCA
1 GTTTACAAAATTACCA
34467818 TTTTACCCCC
Statistics
Matches: 301, Mismatches: 39, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
81 301 1.00
ACGTcount: A:0.39, C:0.20, G:0.09, T:0.31
Consensus pattern (81 bp):
GTTTACAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTTGGTTTGTAAAAT
TACTAAAATACCCTTG
Found at i:34467874 original size:27 final size:27
Alignment explanation
Indices: 34467844--34468248 Score: 459
Period size: 27 Copynumber: 15.0 Consensus size: 27
34467834 CAAAATTTTT
* * ** *
34467844 GAAATACCCTTATAGGGTATTATTATC
1 GAAATACCCCTGTAGGGTAGAATTACC
* **
34467871 GAAATACCCCTATAGGGTATTATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
* **
34467898 GAAATACCCCTATAGGGTATTATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
* ** *
34467925 GAAATACCCCTATAGGGTATTATTACT
1 GAAATACCCCTGTAGGGTAGAATTACC
* * *
34467952 AAAATACCCCTGTAAGGTAGAATTGCC
1 GAAATACCCCTGTAGGGTAGAATTACC
* *
34467979 GAAATACCCATGTAGGGTAGAATTACT
1 GAAATACCCCTGTAGGGTAGAATTACC
*
34468006 GAAATACCCCTGTAGGGTAGAATTATC
1 GAAATACCCCTGTAGGGTAGAATTACC
* * *
34468033 GAAATACCCATGTAGGGTAGAATTGCT
1 GAAATACCCCTGTAGGGTAGAATTACC
*
34468060 GAAATACCCCTGTAGGGTAGAATTACT
1 GAAATACCCCTGTAGGGTAGAATTACC
* *
34468087 GAAATACCCCTGTAGGGTGGAATTACT
1 GAAATACCCCTGTAGGGTAGAATTACC
* **
34468114 GAAATACCCTTGTAGGGTAGAATTATT
1 GAAATACCCCTGTAGGGTAGAATTACC
34468141 GAAATACCCCTGTAGGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
* * *
34468168 GAAATACCCTTGTAGGGTAAAAATACC
1 GAAATACCCCTGTAGGGTAGAATTACC
*
34468195 GAAATACCCCTGTAGGGTAGAATTACT
1 GAAATACCCCTGTAGGGTAGAATTACC
* * * * *
34468222 GAGATACCCTTTTGGGGTAAAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
34468249 ATTGTGCCCC
Statistics
Matches: 334, Mismatches: 44, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 334 1.00
ACGTcount: A:0.34, C:0.18, G:0.20, T:0.28
Consensus pattern (27 bp):
GAAATACCCCTGTAGGGTAGAATTACC
Found at i:34468386 original size:21 final size:21
Alignment explanation
Indices: 34468361--34468410 Score: 73
Period size: 21 Copynumber: 2.4 Consensus size: 21
34468351 ATATTGTTAT
34468361 ACATGATAGGACATGATATGC
1 ACATGATAGGACATGATATGC
* **
34468382 ACATGATATGTTATGATATGC
1 ACATGATAGGACATGATATGC
34468403 ACATGATA
1 ACATGATA
34468411 TGCTATGATA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.38, C:0.12, G:0.20, T:0.30
Consensus pattern (21 bp):
ACATGATAGGACATGATATGC
Found at i:34468387 original size:11 final size:11
Alignment explanation
Indices: 34468361--34468435 Score: 66
Period size: 11 Copynumber: 7.1 Consensus size: 11
34468351 ATATTGTTAT
*
34468361 ACATGATA-GG
1 ACATGATATGC
34468371 ACATGATATGC
1 ACATGATATGC
34468382 ACATGATATG-
1 ACATGATATGC
**
34468392 TTATGATATGC
1 ACATGATATGC
34468403 ACATGATATGC
1 ACATGATATGC
* *
34468414 -TATGATATAC
1 ACATGATATGC
* *
34468424 TCATTATATGC
1 ACATGATATGC
34468435 A
1 A
34468436 TGGGTTGGGT
Statistics
Matches: 51, Mismatches: 11, Indels: 5
0.76 0.16 0.07
Matches are distributed among these distances:
10 24 0.47
11 27 0.53
ACGTcount: A:0.36, C:0.13, G:0.17, T:0.33
Consensus pattern (11 bp):
ACATGATATGC
Found at i:34468434 original size:21 final size:21
Alignment explanation
Indices: 34468373--34468421 Score: 89
Period size: 21 Copynumber: 2.3 Consensus size: 21
34468363 ATGATAGGAC
*
34468373 ATGATATGCACATGATATGTT
1 ATGATATGCACATGATATGCT
34468394 ATGATATGCACATGATATGCT
1 ATGATATGCACATGATATGCT
34468415 ATGATAT
1 ATGATAT
34468422 ACTCATTATA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.35, C:0.10, G:0.18, T:0.37
Consensus pattern (21 bp):
ATGATATGCACATGATATGCT
Found at i:34468540 original size:24 final size:24
Alignment explanation
Indices: 34468494--34468565 Score: 72
Period size: 25 Copynumber: 2.9 Consensus size: 24
34468484 TAATTTACCG
*
34468494 AAAAGGGTATTGCCCCAGTTTATCAA
1 AAAAGGCT-TTGCCCCAG-TTATCAA
*
34468520 AAAAGGCTTTGCCCCAGTTATTAA
1 AAAAGGCTTTGCCCCAGTTATCAA
* **
34468544 AAGAGGCTAGGCCTCCAGTTAT
1 AAAAGGCTTTGCC-CCAGTTAT
34468566 ATGATAAAGC
Statistics
Matches: 40, Mismatches: 5, Indels: 3
0.83 0.10 0.06
Matches are distributed among these distances:
24 16 0.40
25 17 0.43
26 7 0.17
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (24 bp):
AAAAGGCTTTGCCCCAGTTATCAA
Found at i:34474108 original size:7 final size:7
Alignment explanation
Indices: 34474096--34474164 Score: 129
Period size: 7 Copynumber: 9.7 Consensus size: 7
34474086 GAAAATTTTG
34474096 ACCCTAA
1 ACCCTAA
34474103 ACCCTAA
1 ACCCTAA
34474110 ACCCTAA
1 ACCCTAA
34474117 ACCCTAA
1 ACCCTAA
34474124 ACCCTAA
1 ACCCTAA
34474131 ACCCTAA
1 ACCCTAA
34474138 ACCCTACA
1 ACCCTA-A
34474146 ACCCTAA
1 ACCCTAA
34474153 ACCCTAA
1 ACCCTAA
34474160 ACCCT
1 ACCCT
34474165 TGACAATGTC
Statistics
Matches: 61, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
7 54 0.89
8 7 0.11
ACGTcount: A:0.41, C:0.45, G:0.00, T:0.14
Consensus pattern (7 bp):
ACCCTAA
Found at i:34477088 original size:41 final size:41
Alignment explanation
Indices: 34477043--34477160 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
34477033 TGAAAGATAA
34477043 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
34477084 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
34477114 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
34477155 ATGTAG
1 ATGTAG
34477161 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:34477099 original size:71 final size:71
Alignment explanation
Indices: 34477011--34477174 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
34477001 GAGATGTATC
34477011 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
34477076 AGGACA
66 AGGACA
34477082 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
34477147 AGGACA
66 AGGACA
34477153 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
34477175 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:34484201 original size:41 final size:41
Alignment explanation
Indices: 34484156--34484273 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
34484146 TGAAAGATAA
34484156 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
34484197 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
34484227 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
34484268 ATGTAG
1 ATGTAG
34484274 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:34484212 original size:71 final size:71
Alignment explanation
Indices: 34484124--34484287 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
34484114 GAGATGTATC
34484124 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
34484189 AGGACA
66 AGGACA
34484195 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
34484260 AGGACA
66 AGGACA
34484266 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
34484288 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:34486482 original size:40 final size:40
Alignment explanation
Indices: 34486423--34486564 Score: 124
Period size: 40 Copynumber: 3.5 Consensus size: 40
34486413 AAATTGAATG
* * *
34486423 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ***
34486463 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ** *
34486503 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTAGAAACT
*
34486543 CTATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
34486565 GCATTTGTGC
Statistics
Matches: 86, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
39 3 0.03
40 83 0.97
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:34486565 original size:40 final size:39
Alignment explanation
Indices: 34486462--34486590 Score: 152
Period size: 40 Copynumber: 3.2 Consensus size: 39
34486452 TGCTGGAAAT
* * *
34486462 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTGAC
* *
34486502 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTAT
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTGAC
* *
34486542 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGCGA-GTGAC
34486582 TATATCCGG
1 TATATCCGG
34486591 TTATATTCCG
Statistics
Matches: 78, Mismatches: 8, Indels: 6
0.85 0.09 0.07
Matches are distributed among these distances:
39 4 0.05
40 72 0.92
41 2 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGAC
Found at i:34494482 original size:40 final size:40
Alignment explanation
Indices: 34494416--34494582 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
34494406 AAATTGAATG
* * *
34494416 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
34494455 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
34494495 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
34494535 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
34494575 ATATCCGG
1 ATATCCGG
34494583 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:34502490 original size:40 final size:40
Alignment explanation
Indices: 34502424--34502590 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
34502414 AAATTGAATG
* * *
34502424 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
34502463 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
34502503 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
34502543 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
34502583 ATATCCGG
1 ATATCCGG
34502591 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:34504045 original size:29 final size:27
Alignment explanation
Indices: 34504011--34504113 Score: 98
Period size: 29 Copynumber: 3.6 Consensus size: 27
34504001 TACTCAATCA
*
34504011 CGCACACTTAGTGCCATGTGATTCAAGCC
1 CGCACACTTAGTGCCAT-T-ATTCAAGCT
* * *
34504040 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCAT-TA-TTCAAGCT
*
34504069 CGCACACTTAGTGCCATACATTACAAGCT
1 CGCACACTTAGTGCCAT-TATT-CAAGCT
*
34504098 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
34504114 ATCTCGTCCC
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 2 0.03
29 60 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (27 bp):
CGCACACTTAGTGCCATTATTCAAGCT
Found at i:34512079 original size:29 final size:27
Alignment explanation
Indices: 34512045--34512147 Score: 98
Period size: 29 Copynumber: 3.6 Consensus size: 27
34512035 TACTCAATCA
*
34512045 CGCACACTTAGTGCCATGTGATTCAAGCC
1 CGCACACTTAGTGCCAT-T-ATTCAAGCT
* * *
34512074 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCAT-TA-TTCAAGCT
*
34512103 CGCACACTTAGTGCCATACATTACAAGCT
1 CGCACACTTAGTGCCAT-TATT-CAAGCT
*
34512132 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
34512148 ATCTCGTCCC
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 2 0.03
29 60 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (27 bp):
CGCACACTTAGTGCCATTATTCAAGCT
Found at i:34514799 original size:19 final size:20
Alignment explanation
Indices: 34514763--34514801 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 20
34514753 GACCTCTAAG
*
34514763 AATTTTTCTCGAAATTACAA
1 AATTTTTCTCCAAATTACAA
*
34514783 AATTTTT-TCCAAGTTACAA
1 AATTTTTCTCCAAATTACAA
34514802 GGCTCACATG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 10 0.59
20 7 0.41
ACGTcount: A:0.38, C:0.15, G:0.05, T:0.41
Consensus pattern (20 bp):
AATTTTTCTCCAAATTACAA
Found at i:34516613 original size:40 final size:40
Alignment explanation
Indices: 34516554--34516695 Score: 124
Period size: 40 Copynumber: 3.5 Consensus size: 40
34516544 AAATTGAATG
* * *
34516554 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ***
34516594 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ** *
34516634 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTAGAAACT
*
34516674 CTATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
34516696 GCATTTGTGC
Statistics
Matches: 86, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
39 3 0.03
40 83 0.97
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:34516696 original size:40 final size:39
Alignment explanation
Indices: 34516593--34516721 Score: 152
Period size: 40 Copynumber: 3.2 Consensus size: 39
34516583 TGCTGGAAAT
* * *
34516593 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTGAC
* *
34516633 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTAT
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTGAC
* *
34516673 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGCGA-GTGAC
34516713 TATATCCGG
1 TATATCCGG
34516722 TTATATTCCG
Statistics
Matches: 78, Mismatches: 8, Indels: 6
0.85 0.09 0.07
Matches are distributed among these distances:
39 4 0.05
40 72 0.92
41 2 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGAC
Found at i:34520412 original size:43 final size:43
Alignment explanation
Indices: 34520364--34520449 Score: 172
Period size: 43 Copynumber: 2.0 Consensus size: 43
34520354 CTATAATTCC
34520364 ATAGATGAGTTACCATAAAAATCTACATACTTTTATTAATGGT
1 ATAGATGAGTTACCATAAAAATCTACATACTTTTATTAATGGT
34520407 ATAGATGAGTTACCATAAAAATCTACATACTTTTATTAATGGT
1 ATAGATGAGTTACCATAAAAATCTACATACTTTTATTAATGGT
34520450 CTAATTACCA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 43 1.00
ACGTcount: A:0.40, C:0.12, G:0.12, T:0.37
Consensus pattern (43 bp):
ATAGATGAGTTACCATAAAAATCTACATACTTTTATTAATGGT
Found at i:34522249 original size:51 final size:51
Alignment explanation
Indices: 34522183--34522284 Score: 195
Period size: 51 Copynumber: 2.0 Consensus size: 51
34522173 GATGATGCCG
*
34522183 AGCGAGCTGAATTTTGGTTAGATAACACTATCCGGGTGCTGGATGAGCTAT
1 AGCGAGCTGAATTTTGGTTAGATAACACTATCCCGGTGCTGGATGAGCTAT
34522234 AGCGAGCTGAATTTTGGTTAGATAACACTATCCCGGTGCTGGATGAGCTAT
1 AGCGAGCTGAATTTTGGTTAGATAACACTATCCCGGTGCTGGATGAGCTAT
34522285 CCTGTACACC
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
51 50 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.29
Consensus pattern (51 bp):
AGCGAGCTGAATTTTGGTTAGATAACACTATCCCGGTGCTGGATGAGCTAT
Found at i:34523113 original size:28 final size:28
Alignment explanation
Indices: 34523073--34523126 Score: 90
Period size: 28 Copynumber: 1.9 Consensus size: 28
34523063 AACCCTAGGG
*
34523073 ATAAAGGTCATTTTGCATACATAGGGGT
1 ATAAAGGTAATTTTGCATACATAGGGGT
*
34523101 ATAATGGTAATTTTGCATACATAGGG
1 ATAAAGGTAATTTTGCATACATAGGG
34523127 ATATTCTAGT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.33, C:0.09, G:0.24, T:0.33
Consensus pattern (28 bp):
ATAAAGGTAATTTTGCATACATAGGGGT
Found at i:34523138 original size:28 final size:28
Alignment explanation
Indices: 34523082--34523139 Score: 80
Period size: 28 Copynumber: 2.1 Consensus size: 28
34523072 GATAAAGGTC
* *
34523082 ATTTTGCATACATAGGGGTATAATGGTA
1 ATTTTGCATACATAGGGATATAATAGTA
**
34523110 ATTTTGCATACATAGGGATATTCTAGTA
1 ATTTTGCATACATAGGGATATAATAGTA
34523138 AT
1 AT
34523140 CTAACTATTT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.33, C:0.09, G:0.21, T:0.38
Consensus pattern (28 bp):
ATTTTGCATACATAGGGATATAATAGTA
Found at i:34524209 original size:23 final size:24
Alignment explanation
Indices: 34524172--34524222 Score: 77
Period size: 23 Copynumber: 2.2 Consensus size: 24
34524162 AATGGAGGAA
34524172 AGGAGATGAAGAAAAAAAAAGATG
1 AGGAGATGAAGAAAAAAAAAGATG
* *
34524196 AGGAGA-GGAGAAAAGAAAAGATG
1 AGGAGATGAAGAAAAAAAAAGATG
34524219 AGGA
1 AGGA
34524223 AAAGTCAGGA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
23 19 0.76
24 6 0.24
ACGTcount: A:0.59, C:0.00, G:0.35, T:0.06
Consensus pattern (24 bp):
AGGAGATGAAGAAAAAAAAAGATG
Found at i:34530743 original size:28 final size:27
Alignment explanation
Indices: 34530657--34530746 Score: 101
Period size: 27 Copynumber: 3.2 Consensus size: 27
34530647 GTGACAGAGT
*
34530657 CACCAGATACAGATATTTTGTGGCAGTGC
1 CACCAGA-ACAGATAATTTGTGGCA-TGC
** *
34530686 CACCAGAACAGAT-ATACGTGGCAGGGC
1 CACCAGAACAGATAATTTGTGGCA-TGC
34530713 CACCAGAACAGATAATTTGTGGCATAGC
1 CACCAGAACAGATAATTTGTGGCAT-GC
34530741 CACCAG
1 CACCAG
34530747 GACGCTTCCT
Statistics
Matches: 52, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
27 23 0.44
28 22 0.42
29 7 0.13
ACGTcount: A:0.32, C:0.24, G:0.24, T:0.19
Consensus pattern (27 bp):
CACCAGAACAGATAATTTGTGGCATGC
Found at i:34530887 original size:26 final size:27
Alignment explanation
Indices: 34530851--34530913 Score: 92
Period size: 26 Copynumber: 2.3 Consensus size: 27
34530841 AAATTAACCC
*
34530851 TAGGGGTATAAAGGTCATTTTGC-ACA
1 TAGGGGTATAAAGGTAATTTTGCAACA
*
34530877 TAGGGGTATAATGGTAATTTTGCATACA
1 TAGGGGTATAAAGGTAATTTTGCA-ACA
34530905 TAGGGGTAT
1 TAGGGGTAT
34530914 TCTAGTAATC
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
26 21 0.64
28 12 0.36
ACGTcount: A:0.30, C:0.08, G:0.29, T:0.33
Consensus pattern (27 bp):
TAGGGGTATAAAGGTAATTTTGCAACA
Found at i:34530921 original size:28 final size:26
Alignment explanation
Indices: 34530851--34530922 Score: 74
Period size: 26 Copynumber: 2.7 Consensus size: 26
34530841 AAATTAACCC
*
34530851 TAGGGGTATAA-AGGTCATTTTGCACA
1 TAGGGGTATAATA-GTAATTTTGCACA
*
34530877 TAGGGGTATAATGGTAATTTTGCATACA
1 TAGGGGTATAATAGTAATTTTGC--ACA
**
34530905 TAGGGGTATTCTAGTAAT
1 TAGGGGTATAATAGTAAT
34530923 CTAACTATTT
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
26 20 0.53
28 18 0.47
ACGTcount: A:0.31, C:0.08, G:0.26, T:0.35
Consensus pattern (26 bp):
TAGGGGTATAATAGTAATTTTGCACA
Found at i:34544855 original size:6 final size:6
Alignment explanation
Indices: 34544817--34544947 Score: 117
Period size: 6 Copynumber: 21.3 Consensus size: 6
34544807 AAGAAACATT
* * *
34544817 ATCAGA A-CTAGA ATCAAA ATGAGA ATCAAA ATCAGA ATCAGA ATCAG-
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA
* *
34544864 GTGACAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATTAGGTA A-CAGA
1 AT--CAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA
*
34544915 ATCAGA ATCAGT ATCAGGTA A-CAGA ATCAGA AT
1 ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA AT
34544948 ATGAATGCAA
Statistics
Matches: 102, Mismatches: 12, Indels: 22
0.75 0.09 0.16
Matches are distributed among these distances:
5 6 0.06
6 83 0.81
7 9 0.09
8 4 0.04
ACGTcount: A:0.49, C:0.15, G:0.18, T:0.18
Consensus pattern (6 bp):
ATCAGA
Found at i:34544877 original size:25 final size:25
Alignment explanation
Indices: 34544846--34544947 Score: 128
Period size: 25 Copynumber: 4.4 Consensus size: 25
34544836 TGAGAATCAA
*
34544846 AATCAGAATCAGAATCAGGTGACAG
1 AATCAGAATCAGAATCAGGTAACAG
34544871 AATCAGAATCAG-A--A--T--CAG
1 AATCAGAATCAGAATCAGGTAACAG
*
34544889 AATCAGAATCAGAATTAGGTAACAG
1 AATCAGAATCAGAATCAGGTAACAG
*
34544914 AATCAGAATCAGTATCAGGTAACAG
1 AATCAGAATCAGAATCAGGTAACAG
34544939 AATCAGAAT
1 AATCAGAAT
34544948 ATGAATGCAA
Statistics
Matches: 68, Mismatches: 2, Indels: 14
0.81 0.02 0.17
Matches are distributed among these distances:
18 15 0.22
19 1 0.01
20 1 0.01
21 1 0.01
22 1 0.01
23 1 0.01
24 1 0.01
25 47 0.69
ACGTcount: A:0.47, C:0.15, G:0.20, T:0.19
Consensus pattern (25 bp):
AATCAGAATCAGAATCAGGTAACAG
Found at i:34544881 original size:31 final size:31
Alignment explanation
Indices: 34544838--34544947 Score: 105
Period size: 31 Copynumber: 3.4 Consensus size: 31
34544828 AATCAAAATG
*
34544838 AGAATCAAAATCAGAATCAGAATCAGGTGAC
1 AGAATCAGAATCAGAATCAGAATCAGGTGAC
* *
34544869 AGAATCAGAATCAGAATCAGAATCAGAATCAGAATT
1 AGAATCAGAATCAGAATCAGAATCAG-GT--G-A-C
* *
34544905 AGGTAA-CAGAATCAGAATCAGTATCAGGTAAC
1 A-G-AATCAGAATCAGAATCAGAATCAGGTGAC
34544937 AGAATCAGAAT
1 AGAATCAGAAT
34544948 ATGAATGCAA
Statistics
Matches: 64, Mismatches: 7, Indels: 16
0.74 0.08 0.18
Matches are distributed among these distances:
30 2 0.03
31 32 0.50
32 2 0.03
33 1 0.02
34 1 0.02
35 1 0.02
36 2 0.03
37 21 0.33
38 2 0.03
ACGTcount: A:0.48, C:0.15, G:0.19, T:0.18
Consensus pattern (31 bp):
AGAATCAGAATCAGAATCAGAATCAGGTGAC
Found at i:34544885 original size:43 final size:43
Alignment explanation
Indices: 34544826--34544947 Score: 156
Period size: 43 Copynumber: 2.8 Consensus size: 43
34544816 TATCAGAACT
* * *
34544826 AGAATCAAAATGAGAATCAAAATCAGAATCAGAATCAGGTGAC
1 AGAATCAGAATCAGAATCAAAATCAGAATCAGAATCAGGTAAC
* *
34544869 AGAATCAGAATCAGAATCAGAATCAGAATCAGAATTAGGTAAC
1 AGAATCAGAATCAGAATCAAAATCAGAATCAGAATCAGGTAAC
* *
34544912 AGAATCAGAATCAGTATCAGGTAA-CAGAATCAGAAT
1 AGAATCAGAATCAGAATCA--AAATCAGAATCAGAAT
34544948 ATGAATGCAA
Statistics
Matches: 70, Mismatches: 7, Indels: 3
0.88 0.09 0.04
Matches are distributed among these distances:
43 56 0.80
44 12 0.17
45 2 0.03
ACGTcount: A:0.49, C:0.14, G:0.19, T:0.18
Consensus pattern (43 bp):
AGAATCAGAATCAGAATCAAAATCAGAATCAGAATCAGGTAAC
Found at i:34544915 original size:37 final size:37
Alignment explanation
Indices: 34544838--34544931 Score: 111
Period size: 37 Copynumber: 2.5 Consensus size: 37
34544828 AATCAAAATG
* *
34544838 AGAATCAAAATCAGAATCAGAATCAGGTGACAGAATC
1 AGAATCAGAATCAGAATCAGAATCAGATGACAGAATC
* *
34544875 AGAATCAGAATCAGAATCAGAATCAGAATTA-GGTAA-C
1 AGAATCAGAATCAGAATCAGAATCAG-ATGACAG-AATC
*
34544912 AGAATCAGAATCAGTATCAG
1 AGAATCAGAATCAGAATCAG
34544932 GTAACAGAAT
Statistics
Matches: 50, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
37 46 0.92
38 4 0.08
ACGTcount: A:0.48, C:0.15, G:0.19, T:0.18
Consensus pattern (37 bp):
AGAATCAGAATCAGAATCAGAATCAGATGACAGAATC
Found at i:34545216 original size:27 final size:26
Alignment explanation
Indices: 34545168--34545219 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
34545158 GCGAGACTGC
*
34545168 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
34545194 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
34545220 TTGCAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:34546078 original size:27 final size:27
Alignment explanation
Indices: 34546048--34546112 Score: 69
Period size: 27 Copynumber: 2.4 Consensus size: 27
34546038 GGGCATATTC
34546048 GTCATTTTACCATACAAGGG-TATTACG
1 GTCATTTTACCATACAAGGGCT-TTACG
* * * *
34546075 GTCACTTTGCCCTACAGGGGCTTTACG
1 GTCATTTTACCATACAAGGGCTTTACG
*
34546102 GTCTTTTTACC
1 GTCATTTTACC
34546113 TATTAGGGGT
Statistics
Matches: 30, Mismatches: 7, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
27 29 0.97
28 1 0.03
ACGTcount: A:0.20, C:0.25, G:0.20, T:0.35
Consensus pattern (27 bp):
GTCATTTTACCATACAAGGGCTTTACG
Found at i:34546187 original size:27 final size:27
Alignment explanation
Indices: 34546157--34546213 Score: 69
Period size: 27 Copynumber: 2.1 Consensus size: 27
34546147 GGTGTTTTGG
34546157 TAAATCTACAAACCAAGGGTATTTCAA
1 TAAATCTACAAACCAAGGGTATTTCAA
* ** * *
34546184 TAAATTTGTAAACCAATGGTATTTCTA
1 TAAATCTACAAACCAAGGGTATTTCAA
34546211 TAA
1 TAA
34546214 TTTTTAGAAA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.42, C:0.14, G:0.11, T:0.33
Consensus pattern (27 bp):
TAAATCTACAAACCAAGGGTATTTCAA
Found at i:34546259 original size:27 final size:27
Alignment explanation
Indices: 34546253--34546352 Score: 166
Period size: 27 Copynumber: 3.7 Consensus size: 27
34546243 TTTAGTAAAT
34546253 TAGGGGTATTTTGGTAATTTTACAAA-
1 TAGGGGTATTTTGGTAATTTTACAAAC
* *
34546279 TTGAGGGTATTTCGGTAATTTTACAAAC
1 TAG-GGGTATTTTGGTAATTTTACAAAC
34546307 TAGGGGTATTTTGGTAATTTTACAAAC
1 TAGGGGTATTTTGGTAATTTTACAAAC
34546334 TAGGGGTATTTTGGTAATT
1 TAGGGGTATTTTGGTAATT
34546353 CTATCCTACA
Statistics
Matches: 68, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
26 2 0.03
27 64 0.94
28 2 0.03
ACGTcount: A:0.28, C:0.06, G:0.24, T:0.42
Consensus pattern (27 bp):
TAGGGGTATTTTGGTAATTTTACAAAC
Found at i:34546311 original size:54 final size:54
Alignment explanation
Indices: 34546228--34546352 Score: 173
Period size: 54 Copynumber: 2.3 Consensus size: 54
34546218 TAGAAAGTCA
* * * *
34546228 AGGGTATTTCTGTAA-TTTAGTAAATTAGGGGTATTTTGGTAATTTTACAAATT
1 AGGGTATTTCGGTAATTTTAGCAAACTAGGGGTATTTTGGTAATTTTACAAACT
34546281 GAGGGTATTTCGGTAATTTTA-CAAACTAGGGGTATTTTGGTAATTTTACAAACT
1 -AGGGTATTTCGGTAATTTTAGCAAACTAGGGGTATTTTGGTAATTTTACAAACT
*
34546335 AGGGGTATTTTGGTAATT
1 A-GGGTATTTCGGTAATT
34546353 CTATCCTACA
Statistics
Matches: 64, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
53 1 0.02
54 59 0.92
55 4 0.06
ACGTcount: A:0.29, C:0.06, G:0.23, T:0.42
Consensus pattern (54 bp):
AGGGTATTTCGGTAATTTTAGCAAACTAGGGGTATTTTGGTAATTTTACAAACT
Found at i:34546366 original size:54 final size:54
Alignment explanation
Indices: 34546228--34546394 Score: 171
Period size: 54 Copynumber: 3.1 Consensus size: 54
34546218 TAGAAAGTCA
* * * *
34546228 AGGGTATTTCTGTAATT-TAGTAAATTAGGGGTATTTTGGTAATTTTACAAATTG
1 AGGGTATTTCGGTAATTCTA-CAAACTAGGGGTATTTTGGTAATTTTACAAATAG
*
34546282 AGGGTATTTCGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACTAG
1 AGGGTATTTCGGTAATTCTACAAACTAGGGGTATTTTGGTAATTTTACAAA-TAG
* ** ** * *
34546337 -GGGTATTTTGGTAATTCTATCCTAC-AGGGGTATTTCAGTAATTTCAC-AATCG
1 AGGGTATTTCGGTAATTCTA-CAAACTAGGGGTATTTTGGTAATTTTACAAATAG
34546389 AGGGTA
1 AGGGTA
34546395 AAACGATAAT
Statistics
Matches: 97, Mismatches: 12, Indels: 9
0.82 0.10 0.08
Matches are distributed among these distances:
52 2 0.02
53 7 0.07
54 81 0.84
55 7 0.07
ACGTcount: A:0.29, C:0.09, G:0.23, T:0.40
Consensus pattern (54 bp):
AGGGTATTTCGGTAATTCTACAAACTAGGGGTATTTTGGTAATTTTACAAATAG
Found at i:34546392 original size:27 final size:27
Alignment explanation
Indices: 34546254--34546392 Score: 131
Period size: 27 Copynumber: 5.1 Consensus size: 27
34546244 TTAGTAAATT
*
34546254 AGGGGTATTTTGGTAATTTTACAAATTG
1 AGGGGTATTTTGGTAATTTTAC-AATCG
* * *
34546282 A-GGGTATTTCGGTAATTTTACAAACT
1 AGGGGTATTTTGGTAATTTTACAATCG
* *
34546308 AGGGGTATTTTGGTAATTTTACAAACT
1 AGGGGTATTTTGGTAATTTTACAATCG
* *
34546335 AGGGGTATTTTGGTAATTCTATC-CTAC-
1 AGGGGTATTTTGGTAATTTTA-CAAT-CG
** *
34546362 AGGGGTATTTCAGTAATTTCACAATCG
1 AGGGGTATTTTGGTAATTTTACAATCG
34546389 AGGG
1 AGGG
34546393 TAAAACGATA
Statistics
Matches: 93, Mismatches: 13, Indels: 11
0.79 0.11 0.09
Matches are distributed among these distances:
26 5 0.05
27 85 0.91
28 3 0.03
ACGTcount: A:0.28, C:0.10, G:0.24, T:0.38
Consensus pattern (27 bp):
AGGGGTATTTTGGTAATTTTACAATCG
Found at i:34546418 original size:27 final size:27
Alignment explanation
Indices: 34546384--34546691 Score: 370
Period size: 27 Copynumber: 11.4 Consensus size: 27
34546374 GTAATTTCAC
34546384 AATCGAGGGTAAAACGATAATTTTGTA
1 AATCGAGGGTAAAACGATAATTTTGTA
* *
34546411 AA-CTGAGGGTAAAATGGTAATTTTGTA
1 AATC-GAGGGTAAAACGATAATTTTGTA
34546438 AATCGAGGGTAAAACGATAATTTTGTA
1 AATCGAGGGTAAAACGATAATTTTGTA
* * * *
34546465 AATCGAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAACGATAATTTTGTA
* *
34546492 AATCAAGGGTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAACGATAATTTTGTA
* *
34546519 AATCGAGGATAAAA-TAGTAATTTTGTA
1 AATCGAGGGTAAAACGA-TAATTTTGTA
* * *
34546546 AATCGAGGGTAAAATGGTAATTTTATA
1 AATCGAGGGTAAAACGATAATTTTGTA
* * *
34546573 AATCGAAGGTAAAAC-AGTAATTCTATA
1 AATCGAGGGTAAAACGA-TAATTTTGTA
* * *
34546600 AATCGAGAGTAAAACGGTAATTTTTTA
1 AATCGAGGGTAAAACGATAATTTTGTA
*
34546627 AATCGAGGGTAAAACGATAATTTTTTA
1 AATCGAGGGTAAAACGATAATTTTGTA
* *
34546654 AATCGAGGGTAAAACAATAATTCTGTA
1 AATCGAGGGTAAAACGATAATTTTGTA
34546681 AATCGAGGGTA
1 AATCGAGGGTA
34546692 CTTTGGTAAT
Statistics
Matches: 241, Mismatches: 34, Indels: 12
0.84 0.12 0.04
Matches are distributed among these distances:
26 1 0.00
27 239 0.99
28 1 0.00
ACGTcount: A:0.42, C:0.07, G:0.21, T:0.30
Consensus pattern (27 bp):
AATCGAGGGTAAAACGATAATTTTGTA
Found at i:34546716 original size:27 final size:27
Alignment explanation
Indices: 34546686--34546919 Score: 263
Period size: 27 Copynumber: 8.7 Consensus size: 27
34546676 CTGTAAATCG
* **
34546686 AGGGTACTTTGGTAATTTTACAAGTCA
1 AGGGTATTTTGGTAATTTTACAAACCA
* *** *
34546713 AGGGTATTTTAGTAATTTTACAGGTCG
1 AGGGTATTTTGGTAATTTTACAAACCA
*** * *
34546740 AGGGTATTTCAATAATTTCACAAATC-
1 AGGGTATTTTGGTAATTTTACAAACCA
*
34546766 AGAGGTATTTTGGTAATTTTACAAACTA
1 AG-GGTATTTTGGTAATTTTACAAACCA
* *
34546794 GGGGCATTTTGGTAATTTTACAAACCA
1 AGGGTATTTTGGTAATTTTACAAACCA
* *
34546821 GGGGTATTTTGGTAATTTTATAAACCA
1 AGGGTATTTTGGTAATTTTACAAACCA
*
34546848 AGGGTATTTTGGTAATTTTACAAACTA
1 AGGGTATTTTGGTAATTTTACAAACCA
*
34546875 GGGGTATTTTGGTAATTTTACAAACCA
1 AGGGTATTTTGGTAATTTTACAAACCA
*
34546902 GGGGTATTTTGGTAATTT
1 AGGGTATTTTGGTAATTT
34546920 GGTAAGCTAA
Statistics
Matches: 180, Mismatches: 25, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
26 2 0.01
27 177 0.98
28 1 0.01
ACGTcount: A:0.30, C:0.09, G:0.21, T:0.39
Consensus pattern (27 bp):
AGGGTATTTTGGTAATTTTACAAACCA
Found at i:34546741 original size:81 final size:81
Alignment explanation
Indices: 34546656--34546815 Score: 182
Period size: 81 Copynumber: 2.0 Consensus size: 81
34546646 ATTTTTTAAA
** * *
34546656 TCGAGGGTAAAACAATAA-TTCTGTAAATC-GAGGGTACTTTGGTAATTTTAC-AAGTCAAGGGT
1 TCGAGGGTAAAACAATAATTTC-ACAAATCAGA-GGTACTTTGGTAATTTTACAAACT-AAGGGC
34546718 ATTTTAGTAATTTTACAGG
63 ATTTTAGTAATTTTACAGG
*** * *
34546737 TCGAGGGTATTTCAATAATTTCACAAATCAGAGGTATTTTGGTAATTTTACAAACTAGGGGCATT
1 TCGAGGGTAAAACAATAATTTCACAAATCAGAGGTACTTTGGTAATTTTACAAACTAAGGGCATT
*
34546802 TTGGTAATTTTACA
66 TTAGTAATTTTACA
34546816 AACCAGGGGT
Statistics
Matches: 66, Mismatches: 10, Indels: 6
0.80 0.12 0.07
Matches are distributed among these distances:
81 58 0.88
82 8 0.12
ACGTcount: A:0.33, C:0.11, G:0.21, T:0.36
Consensus pattern (81 bp):
TCGAGGGTAAAACAATAATTTCACAAATCAGAGGTACTTTGGTAATTTTACAAACTAAGGGCATT
TTAGTAATTTTACAGG
Found at i:34546911 original size:81 final size:80
Alignment explanation
Indices: 34546686--34546919 Score: 292
Period size: 81 Copynumber: 2.9 Consensus size: 80
34546676 CTGTAAATCG
* * * * ***
34546686 AGGGTACTTTGGTAATTTTAC-AAGTCAAGGGTATTTTAGTAATTTTACAGGTC-GAGGGTATTT
1 AGGGTATTTTGGTAATTTTACAAACT-AGGGGTATTTTGGTAATTTTACAAACCAG-GGGTATTT
*** *
34546749 CAATAATTTCACAAATC
64 TGGTAATTTCACAAACC
*
34546766 AGAGGTATTTTGGTAATTTTACAAACTAGGGGCATTTTGGTAATTTTACAAACCAGGGGTATTTT
1 AG-GGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTT
* *
34546831 GGTAATTTTATAAACC
65 GGTAATTTCACAAACC
34546847 AAGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTT
1 -AGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTT
34546912 GGTAATTT
65 GGTAATTT
34546920 GGTAAGCTAA
Statistics
Matches: 135, Mismatches: 15, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
80 2 0.01
81 127 0.94
82 6 0.04
ACGTcount: A:0.30, C:0.09, G:0.21, T:0.39
Consensus pattern (80 bp):
AGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTG
GTAATTTCACAAACC
Found at i:34550915 original size:24 final size:24
Alignment explanation
Indices: 34550883--34550930 Score: 78
Period size: 24 Copynumber: 2.0 Consensus size: 24
34550873 AATAAATAAA
* *
34550883 TAAAATTTTATGCATATTTCATAT
1 TAAAATTTTATCCATATATCATAT
34550907 TAAAATTTTATCCATATATCATAT
1 TAAAATTTTATCCATATATCATAT
34550931 ACCACCAATT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.40, C:0.10, G:0.02, T:0.48
Consensus pattern (24 bp):
TAAAATTTTATCCATATATCATAT
Found at i:34552536 original size:39 final size:40
Alignment explanation
Indices: 34552465--34552645 Score: 228
Period size: 39 Copynumber: 4.6 Consensus size: 40
34552455 GCTACTCGTT
*
34552465 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
34552505 CAAATGCCTT-GGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
34552544 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
34552583 CGAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
34552624 CAAA-GCCTTCGGGACTTAGCCC
1 CAAATGCCTTCGGGACTTAGCCC
34552646 AGACATCATT
Statistics
Matches: 123, Mismatches: 12, Indels: 12
0.84 0.08 0.08
Matches are distributed among these distances:
38 2 0.02
39 67 0.54
40 44 0.36
41 10 0.08
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:34552608 original size:79 final size:80
Alignment explanation
Indices: 34552465--34552645 Score: 235
Period size: 79 Copynumber: 2.3 Consensus size: 80
34552455 GCTACTCGTT
* * *
34552465 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTGGGACTTAACCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGACTTAACCCGGA
* *
34552530 TTTAGTAAC-TCGCA
66 TATAGTAACTTAGCA
* **
34552544 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTAACTCGCACGAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGA-CTTAACCCG
*
34552607 GATATAGTCACTTAGCA
64 GATATAGTAACTTAGCA
34552624 CAAA-GCCTTCGGGACTTAGCCC
1 CAAATGCCTTCGGGACTTAGCCC
34552646 AGACATCATT
Statistics
Matches: 89, Mismatches: 9, Indels: 7
0.85 0.09 0.07
Matches are distributed among these distances:
77 1 0.01
78 33 0.37
79 39 0.44
80 16 0.18
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (80 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGACTTAACCCGGA
TATAGTAACTTAGCA
Found at i:34564430 original size:27 final size:26
Alignment explanation
Indices: 34564382--34564441 Score: 66
Period size: 27 Copynumber: 2.3 Consensus size: 26
34564372 GGGAAGCTGC
*
34564382 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
34564409 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
*
34564435 CAAATAT
1 CAGATAT
34564442 ATATATGTGG
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 7 0.25
27 21 0.75
ACGTcount: A:0.37, C:0.20, G:0.22, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:34565234 original size:54 final size:55
Alignment explanation
Indices: 34565176--34565291 Score: 139
Period size: 54 Copynumber: 2.1 Consensus size: 55
34565166 TTTAACACCC
34565176 TAGGGGTAAAAT-GGTAATTT-TACCCCACAAAGGTATCTCGGTAATTCTACCCTA
1 TAGGGGTAAAATCGGT-ATTTCTACCCCACAAAGGTATCTCGGTAATTCTACCCTA
** * * * * *
34565230 TAGGGGT-ATTTCGGTATTTCTACCCTATAAGGGTATTTCGGTAATTCTATCCTA
1 TAGGGGTAAAATCGGTATTTCTACCCCACAAAGGTATCTCGGTAATTCTACCCTA
34565284 TAGGGGTA
1 TAGGGGTA
34565292 TTTCGATAAT
Statistics
Matches: 52, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
53 6 0.12
54 46 0.88
ACGTcount: A:0.27, C:0.17, G:0.22, T:0.34
Consensus pattern (55 bp):
TAGGGGTAAAATCGGTATTTCTACCCCACAAAGGTATCTCGGTAATTCTACCCTA
Found at i:34565237 original size:27 final size:27
Alignment explanation
Indices: 34565188--34565387 Score: 229
Period size: 27 Copynumber: 7.4 Consensus size: 27
34565178 GGGGTAAAAT
* * ** *
34565188 GGTAATTTTACCCCACAAAGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
34565215 GGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
34565242 GGTATTTCTACCCTATAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
34565269 GGTAATTCTATCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
34565296 GATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
** * *
34565323 AATAATTCTATCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
34565350 GGTAATTCTATCTTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
34565377 AGTAATTCTAC
1 GGTAATTCTAC
34565388 AACTTATCCA
Statistics
Matches: 150, Mismatches: 23, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 150 1.00
ACGTcount: A:0.26, C:0.19, G:0.18, T:0.37
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Done.