Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr03 135709677
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 135709677
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 125 of 438
Found at i:36911281 original size:43 final size:45
Alignment explanation
Indices: 36911207--36911297 Score: 114
Period size: 43 Copynumber: 2.1 Consensus size: 45
36911197 TTAAATTTAC
36911207 ATAAAAAAGATAAAATTTTAATGGGTATTTAATGAAAATAA-TAA
1 ATAAAAAAGATAAAATTTTAATGGGTATTTAATGAAAATAATTAA
* *** * *
36911251 ATAAAAAA-CTAAAATTTTAATTTTTGTTTAATGAGAATAATTAA
1 ATAAAAAAGATAAAATTTTAATGGGTATTTAATGAAAATAATTAA
36911295 ATA
1 ATA
36911298 TTATGATTTA
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
43 26 0.65
44 14 0.35
ACGTcount: A:0.54, C:0.01, G:0.09, T:0.36
Consensus pattern (45 bp):
ATAAAAAAGATAAAATTTTAATGGGTATTTAATGAAAATAATTAA
Found at i:36912275 original size:22 final size:22
Alignment explanation
Indices: 36912250--36912317 Score: 118
Period size: 22 Copynumber: 3.1 Consensus size: 22
36912240 CTTGTATCGA
36912250 TAAAAGGGTTCCCATGTATTGG
1 TAAAAGGGTTCCCATGTATTGG
* *
36912272 TAAAAAGGTTCCCATGTTTTGG
1 TAAAAGGGTTCCCATGTATTGG
36912294 TAAAAGGGTTCCCATGTATTGG
1 TAAAAGGGTTCCCATGTATTGG
36912316 TA
1 TA
36912318 GAAGTTTGGA
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 42 1.00
ACGTcount: A:0.28, C:0.13, G:0.25, T:0.34
Consensus pattern (22 bp):
TAAAAGGGTTCCCATGTATTGG
Found at i:36914865 original size:40 final size:40
Alignment explanation
Indices: 36914828--36915053 Score: 287
Period size: 40 Copynumber: 5.7 Consensus size: 40
36914818 GCTACTCGTT
* *
36914828 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
* *
36914868 CAAATGCCTTCGGGACTTAACCCAGATTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
36914908 CAAATGCCTTCGGAACTTAACCCGGATTTAGTAATTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
36914948 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* ** * * *
36914988 CAAATGCCTTC-GAATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
36915029 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
36915054 CATCATTCGA
Statistics
Matches: 164, Mismatches: 18, Indels: 8
0.86 0.09 0.04
Matches are distributed among these distances:
39 2 0.01
40 150 0.91
41 12 0.07
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:36917534 original size:46 final size:46
Alignment explanation
Indices: 36917353--36917534 Score: 258
Period size: 46 Copynumber: 4.0 Consensus size: 46
36917343 TTTGACATGA
* * * * * *
36917353 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGT
*** *
36917399 TGCCATGGTATCTTTCAACCATGGTCTTGTTCATTTCATATCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
36917445 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
36917491 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
36917535 AGAGCACACT
Statistics
Matches: 124, Mismatches: 11, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
45 4 0.03
46 120 0.97
ACGTcount: A:0.21, C:0.24, G:0.15, T:0.40
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
Found at i:36919682 original size:11 final size:11
Alignment explanation
Indices: 36919666--36919717 Score: 52
Period size: 11 Copynumber: 4.7 Consensus size: 11
36919656 TATACTAAAT
36919666 AAATAATAATA
1 AAATAATAATA
*
36919677 AAATAAT-ATT
1 AAATAATAATA
* *
36919687 AAATATCTCATA
1 AAATA-ATAATA
*
36919699 AAATATTAATA
1 AAATAATAATA
36919710 AAATAATA
1 AAATAATA
36919718 TTTATCTAAT
Statistics
Matches: 33, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
10 7 0.21
11 19 0.58
12 7 0.21
ACGTcount: A:0.63, C:0.04, G:0.00, T:0.33
Consensus pattern (11 bp):
AAATAATAATA
Found at i:36926674 original size:38 final size:40
Alignment explanation
Indices: 36926527--36926747 Score: 296
Period size: 40 Copynumber: 5.7 Consensus size: 40
36926517 GCTACTCGTT
*
36926527 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
36926567 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCG--
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
36926605 CAAATGCCTTC-GGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
36926644 CAAATGCCTTC-GGACTTA-CCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * *
36926682 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
36926723 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
36926748 CATCATTCGA
Statistics
Matches: 167, Mismatches: 7, Indels: 14
0.89 0.04 0.07
Matches are distributed among these distances:
37 26 0.16
38 45 0.27
39 22 0.13
40 61 0.37
41 13 0.08
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:36931304 original size:28 final size:29
Alignment explanation
Indices: 36931240--36931341 Score: 109
Period size: 29 Copynumber: 3.6 Consensus size: 29
36931230 GGGACGAGAT
* * *
36931240 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* *
36931269 TGGCACTAAGTGTGC-AGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* * *
36931297 TGGCACTATGTGTGCGGGCTT-GAATCACA
1 TGGCACTAAGTGTGCGAGCTTGGAAT-ATA
36931326 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
36931342 TGATTGAGTA
Statistics
Matches: 60, Mismatches: 11, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
28 26 0.43
29 34 0.57
ACGTcount: A:0.22, C:0.17, G:0.32, T:0.29
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGGAATATA
Found at i:36934349 original size:29 final size:28
Alignment explanation
Indices: 36934253--36934351 Score: 90
Period size: 29 Copynumber: 3.4 Consensus size: 28
36934243 CAACCACAAG
* *
36934253 ATCGCCACAAAGGTATCCTTTTAACAGAG
1 ATCGCCACAAAGCT-TCCTTTTAACAGAA
* * * *
36934282 GTCACCCCAAAGGCTTCCTTTTAACAGAT
1 ATCGCCACAAA-GCTTCCTTTTAACAGAA
* * *
36934311 ATTGCTACAAATGCTTCCTTTTAATAGAA
1 ATCGCCACAAA-GCTTCCTTTTAACAGAA
36934340 ATCGCCACAAAG
1 ATCGCCACAAAG
36934352 ACGTCTTTTC
Statistics
Matches: 54, Mismatches: 15, Indels: 3
0.75 0.21 0.04
Matches are distributed among these distances:
28 1 0.02
29 51 0.94
30 2 0.04
ACGTcount: A:0.33, C:0.25, G:0.14, T:0.27
Consensus pattern (28 bp):
ATCGCCACAAAGCTTCCTTTTAACAGAA
Found at i:36935833 original size:70 final size:71
Alignment explanation
Indices: 36935682--36935844 Score: 310
Period size: 70 Copynumber: 2.3 Consensus size: 71
36935672 GAGATGTATC
36935682 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
36935747 AGGACA
66 AGGACA
36935753 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCT-GGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
*
36935817 CGGACA
66 AGGACA
36935823 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
36935845 AGACAAATCG
Statistics
Matches: 91, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
70 51 0.56
71 40 0.44
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:36942830 original size:71 final size:71
Alignment explanation
Indices: 36942742--36942905 Score: 310
Period size: 71 Copynumber: 2.3 Consensus size: 71
36942732 GAGATGTATC
36942742 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
36942807 AGGACA
66 AGGACA
*
36942813 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTGGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
*
36942878 CGGACA
66 AGGACA
36942884 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
36942906 AGACAAATCG
Statistics
Matches: 91, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
71 91 1.00
ACGTcount: A:0.34, C:0.18, G:0.29, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:36946822 original size:40 final size:40
Alignment explanation
Indices: 36946767--36946950 Score: 244
Period size: 40 Copynumber: 4.5 Consensus size: 40
36946757 TATTCGGATG
36946767 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
36946807 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-A--AGTTACT
* ** * *
36946850 ATACCCGGGCTAAGTCCCGAAGGCATTCATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* * *
36946890 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
36946930 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
36946951 ATACTTGGGT
Statistics
Matches: 125, Mismatches: 16, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
39 13 0.10
40 76 0.61
41 1 0.01
43 35 0.28
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
Found at i:36946910 original size:83 final size:80
Alignment explanation
Indices: 36946771--36946950 Score: 263
Period size: 83 Copynumber: 2.2 Consensus size: 80
36946761 CGGATGATAT
** * *
36946771 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTCATGCAAGTGACTATATCCGGGCTAAGACCCGAAGGCATTTG
36946836 TGCGAGTAGTTGCTATAC
66 TGC--G-AGTTGCTATAC
*
36946854 CCGGGCTAAGTCCCGAAGGCATTCATGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTCATGCAAGTGACTATATCCGGGCTAAGACCCGAAGGCATTTG
*
36946919 TGCGAGTTGCTATAT
66 TGCGAGTTGCTATAC
*
36946934 CC-GGCTAAATCCCGAAG
1 CCGGGCTAAGTCCCGAAG
36946951 ATACTTGGGT
Statistics
Matches: 90, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
79 14 0.16
80 12 0.13
81 1 0.01
83 63 0.70
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.24
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTCATGCAAGTGACTATATCCGGGCTAAGACCCGAAGGCATTTG
TGCGAGTTGCTATAC
Found at i:36951875 original size:78 final size:78
Alignment explanation
Indices: 36951786--36951967 Score: 258
Period size: 78 Copynumber: 2.3 Consensus size: 78
36951776 AATGTTCGAG
36951786 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGACATCCGGGCTAAG-CCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGC-AATTGTGACATCCGGGCTAAGTCCCGAAGGC
36951850 AATTGTGCGAGTTA
65 AATTGTGCGAGTTA
* * *
36951864 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAGTTGTGATATCCGGGTTAAGTCCCGAAGGCA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAATTGTGACATCCGGGCTAAGTCCCGAAGGCA
* *
36951929 TTTGTGCGGGTTA
66 ATTGTGCGAGTTA
** * *
36951942 CCATAACCGGGCTATGTCCCGAAGGC
1 TGATATCCGGGCTAAG-CCCGAAGGC
36951968 GTTTGAACGA
Statistics
Matches: 93, Mismatches: 9, Indels: 3
0.89 0.09 0.03
Matches are distributed among these distances:
77 18 0.19
78 66 0.71
79 9 0.10
ACGTcount: A:0.24, C:0.23, G:0.30, T:0.23
Consensus pattern (78 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAATTGTGACATCCGGGCTAAGTCCCGAAGGCA
ATTGTGCGAGTTA
Found at i:36951963 original size:40 final size:39
Alignment explanation
Indices: 36951786--36951967 Score: 231
Period size: 39 Copynumber: 4.6 Consensus size: 39
36951776 AATGTTCGAG
* * *
36951786 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
*
36951825 TGACATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
*
36951864 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGC-AGTTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* * *
36951902 TGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTA
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTA
** * *
36951942 CCATAACCGGGCTATGTCCCGAAGGC
1 TGATATCCGGGCTAAG-CCCGAAGGC
36951968 GTTTGAACGA
Statistics
Matches: 126, Mismatches: 15, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
38 19 0.15
39 83 0.66
40 24 0.19
ACGTcount: A:0.24, C:0.23, G:0.30, T:0.23
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
Found at i:36957666 original size:39 final size:40
Alignment explanation
Indices: 36957593--36957733 Score: 133
Period size: 39 Copynumber: 3.6 Consensus size: 40
36957583 CCGCACCAAG
* * * * * * *
36957593 GCCTACGGGACTTAACCCGGATATCACGATTTGCACAAAC
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
* * *
36957633 ACCTTCGGGTCTTAG-CCGGATTTAACAACTTGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
* * * *
36957672 GCCTTC-GGTCTTAGCCCGGATATAGCTACTAGCACAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
*
36957711 GCCTTCGGGTCTTAACCCGGATA
1 GCCTTCGGGTCTTAGCCCGGATA
36957734 AAATTTTCAG
Statistics
Matches: 81, Mismatches: 18, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
38 8 0.10
39 47 0.58
40 26 0.32
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
Found at i:36964285 original size:40 final size:40
Alignment explanation
Indices: 36964219--36964385 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
36964209 AAATTGAATG
* * *
36964219 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
36964258 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
36964298 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
36964338 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
36964378 ATATCCGG
1 ATATCCGG
36964386 TTATATTCCG
Statistics
Matches: 103, Mismatches: 20, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
39 16 0.16
40 85 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:36966168 original size:40 final size:39
Alignment explanation
Indices: 36966018--36966201 Score: 251
Period size: 39 Copynumber: 4.7 Consensus size: 39
36966008 AAATGTTCGA
* *
36966018 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
*
36966057 GTGACATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
*
36966096 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
* * *
36966135 GTGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTT
1 GTGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTT
*** *
36966175 ACCATAACCGGGCTAAGTCCCGAAGGC
1 GTGATATCCGGGCTAAG-CCCGAAGGC
36966202 GTTTGAACGA
Statistics
Matches: 130, Mismatches: 14, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
39 88 0.68
40 42 0.32
ACGTcount: A:0.24, C:0.22, G:0.31, T:0.22
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
Found at i:36966237 original size:79 final size:79
Alignment explanation
Indices: 36966025--36966239 Score: 186
Period size: 79 Copynumber: 2.7 Consensus size: 79
36966015 CGAGTGATAT
** * * * * * *
36966025 CCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGACATCCGGGCT-AA-GCCCGAAGGCAATTG
1 CCGGGCTAAGCCCGAAGGCAATTGAACGAGTAGTGATATCC-GGATAAACTCCCGAAGGCAATTG
** *
36966088 TGCGAGTTATGATAT
65 TGCGAGTTACCATAA
** * * * * *
36966103 CCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATTTGT
1 CCGGGCTAAGCCCGAAGGCAATTGAACGAGTAGTGATATCCGGATAAACTCCCGAAGGCAATTGT
*
36966168 GCGGGTTACCATAA
66 GCGAGTTACCATAA
**
36966182 CCGGGCTAAGTCCCGAAGGCGTTTGAACGAGTAGCT-ATATCCGGATAAACT-CCGAAGG
1 CCGGGCTAAG-CCCGAAGGCAATTGAACGAGTAG-TGATATCCGGATAAACTCCCGAAGG
36966240 TATGTGATTC
Statistics
Matches: 115, Mismatches: 18, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
77 3 0.03
78 40 0.35
79 41 0.36
80 30 0.26
81 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.30, T:0.22
Consensus pattern (79 bp):
CCGGGCTAAGCCCGAAGGCAATTGAACGAGTAGTGATATCCGGATAAACTCCCGAAGGCAATTGT
GCGAGTTACCATAA
Found at i:36971662 original size:40 final size:40
Alignment explanation
Indices: 36971607--36971790 Score: 244
Period size: 40 Copynumber: 4.5 Consensus size: 40
36971597 TATTCGGATG
36971607 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
36971647 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-A--AGTTACT
* ** * *
36971690 ATACCCGGGCTAAGTCCCGAAGGCATTCATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* * *
36971730 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
36971770 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
36971791 ATACTTGGGT
Statistics
Matches: 125, Mismatches: 16, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
39 13 0.10
40 76 0.61
41 1 0.01
43 35 0.28
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
Found at i:36971750 original size:83 final size:80
Alignment explanation
Indices: 36971611--36971790 Score: 263
Period size: 83 Copynumber: 2.2 Consensus size: 80
36971601 CGGATGATAT
** * *
36971611 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTCATGCAAGTGACTATATCCGGGCTAAGACCCGAAGGCATTTG
36971676 TGCGAGTAGTTGCTATAC
66 TGC--G-AGTTGCTATAC
*
36971694 CCGGGCTAAGTCCCGAAGGCATTCATGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTCATGCAAGTGACTATATCCGGGCTAAGACCCGAAGGCATTTG
*
36971759 TGCGAGTTGCTATAT
66 TGCGAGTTGCTATAC
*
36971774 CC-GGCTAAATCCCGAAG
1 CCGGGCTAAGTCCCGAAG
36971791 ATACTTGGGT
Statistics
Matches: 90, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
79 14 0.16
80 12 0.13
81 1 0.01
83 63 0.70
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.24
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTCATGCAAGTGACTATATCCGGGCTAAGACCCGAAGGCATTTG
TGCGAGTTGCTATAC
Found at i:36981059 original size:23 final size:23
Alignment explanation
Indices: 36981012--36981110 Score: 107
Period size: 23 Copynumber: 4.4 Consensus size: 23
36981002 GTCATGGTTG
36981012 GTAAGCTCCT-TTGAGCT-AAACA
1 GTAAGCT-CTATTGAGCTGAAACA
36981034 GTAAGCTCTATTGAGCTGAAACA
1 GTAAGCTCTATTGAGCTGAAACA
* *
36981057 GTAAGCACTATTGAGCCG-AAC-
1 GTAAGCTCTATTGAGCTGAAACA
* * *
36981078 GATAAGCTCTAATGAGATGAAATA
1 G-TAAGCTCTATTGAGCTGAAACA
36981102 GTAAGCTCT
1 GTAAGCTCT
36981111 TACAAGCTAT
Statistics
Matches: 65, Mismatches: 7, Indels: 9
0.80 0.09 0.11
Matches are distributed among these distances:
21 3 0.05
22 30 0.46
23 31 0.48
24 1 0.02
ACGTcount: A:0.35, C:0.18, G:0.21, T:0.25
Consensus pattern (23 bp):
GTAAGCTCTATTGAGCTGAAACA
Found at i:36981071 original size:45 final size:45
Alignment explanation
Indices: 36981022--36981107 Score: 111
Period size: 45 Copynumber: 1.9 Consensus size: 45
36981012 GTAAGCTCCT
* * *
36981022 TTGAGCTAAAC-AGTAAGCTCTATTGAGCTGAAACAGTAAGCACTA
1 TTGAGCCAAACGA-TAAGCTCTAATGAGATGAAACAGTAAGCACTA
* *
36981067 TTGAGCCGAACGATAAGCTCTAATGAGATGAAATAGTAAGC
1 TTGAGCCAAACGATAAGCTCTAATGAGATGAAACAGTAAGC
36981108 TCTTACAAGC
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
45 34 0.97
46 1 0.03
ACGTcount: A:0.38, C:0.16, G:0.22, T:0.23
Consensus pattern (45 bp):
TTGAGCCAAACGATAAGCTCTAATGAGATGAAACAGTAAGCACTA
Found at i:36986206 original size:59 final size:60
Alignment explanation
Indices: 36986110--36986242 Score: 205
Period size: 59 Copynumber: 2.2 Consensus size: 60
36986100 GACAAGATTG
* * *
36986110 GCACTAAGTGTGCGGGTTTAAAAATTGTACAGCACTAAGTGTGCGAACTGAAAATATATA
1 GCACTAAGTGTGCGAGTCTAAAAATTATACAGCACTAAGTGTGCGAACTGAAAATATATA
* * *
36986170 GCACTAAGTGTGCGAG-CTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCGAGTCTAAAAATTATACAGCACTAAGTGTGCGAACTGAAAATATATA
36986229 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
36986243 GATTCACTAT
Statistics
Matches: 67, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
59 52 0.78
60 15 0.22
ACGTcount: A:0.35, C:0.14, G:0.25, T:0.26
Consensus pattern (60 bp):
GCACTAAGTGTGCGAGTCTAAAAATTATACAGCACTAAGTGTGCGAACTGAAAATATATA
Found at i:36986255 original size:29 final size:29
Alignment explanation
Indices: 36986140--36986242 Score: 188
Period size: 29 Copynumber: 3.5 Consensus size: 29
36986130 AAAATTGTAC
*
36986140 AGCACTAAGTGTGCGAACTGAAAATATAT
1 AGCACTAAGTGTGCGAGCTGAAAATATAT
36986169 AGCACTAAGTGTGCGAGCTGAAAATTATAT
1 AGCACTAAGTGTGCGAGCTGAAAA-TATAT
36986199 AGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAGCTGAAAATATAT
36986228 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
36986243 GATTCACTAT
Statistics
Matches: 72, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
29 43 0.60
30 29 0.40
ACGTcount: A:0.37, C:0.15, G:0.24, T:0.24
Consensus pattern (29 bp):
AGCACTAAGTGTGCGAGCTGAAAATATAT
Found at i:36995623 original size:42 final size:43
Alignment explanation
Indices: 36995530--36995680 Score: 209
Period size: 43 Copynumber: 3.5 Consensus size: 43
36995520 CAATGCTAAC
* * *
36995530 GTCCCAGACGTGGTCTTACATGTAATCAAATATCGATGCCACT
1 GTCCCAGACGTGGTCTTACACGAAATCAAATATCGATGCCAAT
*
36995573 GTCCCAGACAG-GTTCTTACACGAAATCAAATAT-GATGCCAAT
1 GTCCCAGAC-GTGGTCTTACACGAAATCAAATATCGATGCCAAT
* *
36995615 GTCCCAGACATGGTCTTACACGTAAATCAAAAATCGATGCCAAT
1 GTCCCAGACGTGGTCTTACACG-AAATCAAATATCGATGCCAAT
36995659 GTCCC-GACGTGGTCTTACACGA
1 GTCCCAGACGTGGTCTTACACGA
36995681 TAACACATAT
Statistics
Matches: 96, Mismatches: 8, Indels: 9
0.85 0.07 0.08
Matches are distributed among these distances:
42 28 0.29
43 53 0.55
44 15 0.16
ACGTcount: A:0.31, C:0.26, G:0.19, T:0.25
Consensus pattern (43 bp):
GTCCCAGACGTGGTCTTACACGAAATCAAATATCGATGCCAAT
Found at i:37001892 original size:15 final size:15
Alignment explanation
Indices: 37001871--37001905 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
37001861 TCATTCTGTA
37001871 AGGAGCTATCGGTAT
1 AGGAGCTATCGGTAT
* *
37001886 CGGAGCTATTGGTAT
1 AGGAGCTATCGGTAT
37001901 AGGAG
1 AGGAG
37001906 ATGTTCCTGG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.26, C:0.11, G:0.37, T:0.26
Consensus pattern (15 bp):
AGGAGCTATCGGTAT
Found at i:37007292 original size:20 final size:20
Alignment explanation
Indices: 37007264--37007315 Score: 95
Period size: 20 Copynumber: 2.6 Consensus size: 20
37007254 TCATAGAGTT
37007264 ACACGGGCGTGTCCCAAGCC
1 ACACGGGCGTGTCCCAAGCC
*
37007284 ACACAGGCGTGTCCCAAGCC
1 ACACGGGCGTGTCCCAAGCC
37007304 ACACGGGCGTGT
1 ACACGGGCGTGT
37007316 GTGACAACAC
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.21, C:0.37, G:0.31, T:0.12
Consensus pattern (20 bp):
ACACGGGCGTGTCCCAAGCC
Found at i:37012468 original size:40 final size:40
Alignment explanation
Indices: 37012409--37012577 Score: 173
Period size: 40 Copynumber: 4.2 Consensus size: 40
37012399 CGGGACTTTA
* * *
37012409 CCCGGATATCACGATTTGCACAAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* *
37012449 CCCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * * * *
37012489 CCCGGATATAGCTACTAGCACAATTGCCTTCGGGTCTTAA
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * *
37012529 CCCGGATAT-A-AA-TTTCAGCATAATTGTCTTCGGGGCTTAG
1 CCCGGATATAACAACTTGCA-CA-AA-TGCCTTCGGGTCTTAG
37012569 CCCGGATAT
1 CCCGGATAT
37012578 CATTCAATTT
Statistics
Matches: 106, Mismatches: 20, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
37 3 0.03
38 3 0.03
39 1 0.01
40 99 0.93
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (40 bp):
CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
Found at i:37020498 original size:40 final size:40
Alignment explanation
Indices: 37020439--37020607 Score: 173
Period size: 40 Copynumber: 4.2 Consensus size: 40
37020429 CGGGACTTTA
* * *
37020439 CCCGGATATCACGATTTGCACAAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* *
37020479 CCCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * * * *
37020519 CCCGGATATAGCTACTAGCACAATTGCCTTCGGGTCTTAA
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * *
37020559 CCCGGATAT-A-AA-TTTCAGCATAATTGTCTTCGGGGCTTAG
1 CCCGGATATAACAACTTGCA-CA-AA-TGCCTTCGGGTCTTAG
37020599 CCCGGATAT
1 CCCGGATAT
37020608 CATTCAATTT
Statistics
Matches: 106, Mismatches: 20, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
37 3 0.03
38 3 0.03
39 1 0.01
40 99 0.93
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (40 bp):
CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
Found at i:37025919 original size:48 final size:48
Alignment explanation
Indices: 37025802--37026023 Score: 263
Period size: 48 Copynumber: 4.6 Consensus size: 48
37025792 TGAGATCCCA
* * *
37025802 TGTAAGACCATGTCT-GCGACATGGCATC-G-GTATCCGAGATGAGAGCCAG
1 TGTAAGACCATGTCTAG-GACATGGCATCAGCGT-T--GATATGTGTGCCAG
*
37025851 TGTAAGACCATGTCTGGGACATGGCATCAGCGTTGATATGTGTGCCAG
1 TGTAAGACCATGTCTAGGACATGGCATCAGCGTTGATATGTGTGCCAG
*
37025899 TGTAAGACCATGTCTAGGACATGGCATC-GATGTTGATATGTGTGCCAG
1 TGTAAGACCATGTCTAGGACATGGCATCAG-CGTTGATATGTGTGCCAG
* ** * * *
37025947 TATAAGATGATGTCTGGGACATGGCATCAGCGATGATATGTGTGCTAG
1 TGTAAGACCATGTCTAGGACATGGCATCAGCGTTGATATGTGTGCCAG
*
37025995 TGTAAGACCATGTCTAGGACATGGAATCA
1 TGTAAGACCATGTCTAGGACATGGCATCA
37026024 ACATCGATAT
Statistics
Matches: 151, Mismatches: 17, Indels: 11
0.84 0.09 0.06
Matches are distributed among these distances:
47 1 0.01
48 118 0.78
49 27 0.18
50 3 0.02
51 2 0.01
ACGTcount: A:0.27, C:0.18, G:0.30, T:0.26
Consensus pattern (48 bp):
TGTAAGACCATGTCTAGGACATGGCATCAGCGTTGATATGTGTGCCAG
Found at i:37025971 original size:96 final size:97
Alignment explanation
Indices: 37025802--37026070 Score: 314
Period size: 96 Copynumber: 2.8 Consensus size: 97
37025792 TGAGATCCCA
* *
37025802 TGTAAGACCATGTCT-GCGACATGGCATCGGTATCCGAGATGAGAGCCAGTGTAAGACCATGTCT
1 TGTAAGACCATGTCTAG-GACATGGCATCGATATCCGAGATGAGAGCCAGTATAAGACCATGTCT
*
37025866 GGGACATGGCATCAGCGTTGATATGTGTGCCAG
65 GGGACATGGCATCAGCGATGATATGTGTGCCAG
* * * * * **
37025899 TGTAAGACCATGTCTAGGACATGGCATCGATGT-TGATATGTGTGCCAGTATAAGATGATGTCTG
1 TGTAAGACCATGTCTAGGACATGGCATCGATATCCGAGATGAGAGCCAGTATAAGACCATGTCTG
*
37025963 GGACATGGCATCAGCGATGATATGTGTGCTAG
66 GGACATGGCATCAGCGATGATATGTGTGCCAG
* * * * * *
37025995 TGTAAGACCATGTCTAGGACATGGAATCAACAT-CGATATAAGA-CTTC-GTATAAGACCATATC
1 TGTAAGACCATGTCTAGGACATGGCATCGATATCCGAGATGAGAGC--CAGTATAAGACCATGTC
*
37026057 TGGGATATGGCATC
64 TGGGACATGGCATC
37026071 TATATGTGGA
Statistics
Matches: 146, Mismatches: 23, Indels: 7
0.83 0.13 0.04
Matches are distributed among these distances:
95 1 0.01
96 114 0.78
97 30 0.21
98 1 0.01
ACGTcount: A:0.28, C:0.18, G:0.28, T:0.26
Consensus pattern (97 bp):
TGTAAGACCATGTCTAGGACATGGCATCGATATCCGAGATGAGAGCCAGTATAAGACCATGTCTG
GGACATGGCATCAGCGATGATATGTGTGCCAG
Found at i:37032011 original size:50 final size:50
Alignment explanation
Indices: 37031936--37032229 Score: 322
Period size: 50 Copynumber: 5.8 Consensus size: 50
37031926 ACTGAAGCCC
* *
37031936 TCTGGTACACATAGTAGCTTGCACTTAGTACTACACATGCGACCTAACAA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAA
* * *
37031986 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAA
* * * * ** * *
37032036 TC-GGATACACGTAGTAGCCCGCATTTAGTACTACACACGTGGTCGAAGCTA
1 TCTGG-TACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAA-CAA
* * * * *
37032087 TCGGGTACGCATAGGAGCCTACACTTAGTACTACACATGCGACCTAACAA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAA
*
37032137 TCTGATACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAA-AA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAA
* ** *
37032186 CCATTTTAAACACATAGTAGCCTGCACATAGTACTACACATGTG
1 TC-TGGT--ACACATAGTAGCCTGCACTTAGTACTACACATGTG
37032230 TTCTCACAAC
Statistics
Matches: 205, Mismatches: 33, Indels: 10
0.83 0.13 0.04
Matches are distributed among these distances:
49 5 0.02
50 129 0.63
51 35 0.17
52 36 0.18
ACGTcount: A:0.31, C:0.27, G:0.18, T:0.24
Consensus pattern (50 bp):
TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAA
Found at i:37032224 original size:26 final size:26
Alignment explanation
Indices: 37032142--37032226 Score: 68
Period size: 26 Copynumber: 3.3 Consensus size: 26
37032132 AACAATCTGA
*
37032142 TACACATAGTAGCCTGCACTTAGTAC
1 TACACATAGTAGCCTGCACATAGTAC
** **
37032168 TACACAT-GT-GACCTAAAACCATTTTA-
1 TACACATAGTAG-CCT-GCA-CATAGTAC
*
37032194 AACACATAGTAGCCTGCACATAGTAC
1 TACACATAGTAGCCTGCACATAGTAC
37032220 TACACAT
1 TACACAT
37032227 GTGTTCTCAC
Statistics
Matches: 42, Mismatches: 11, Indels: 12
0.65 0.17 0.18
Matches are distributed among these distances:
24 1 0.02
25 10 0.24
26 21 0.50
27 9 0.21
28 1 0.02
ACGTcount: A:0.36, C:0.26, G:0.12, T:0.26
Consensus pattern (26 bp):
TACACATAGTAGCCTGCACATAGTAC
Found at i:37037546 original size:17 final size:18
Alignment explanation
Indices: 37037504--37037552 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
37037494 AGTTGAAAAG
37037504 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
37037523 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
37037540 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
37037553 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:37038441 original size:40 final size:40
Alignment explanation
Indices: 37038375--37038541 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
37038365 AAATTGAATG
* * *
37038375 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * **
37038414 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
37038454 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
37038494 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
37038534 ATATCCGG
1 ATATCCGG
37038542 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:37046454 original size:40 final size:40
Alignment explanation
Indices: 37046388--37046554 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
37046378 AAATTGAATG
* * *
37046388 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * **
37046427 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
37046467 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
37046507 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
37046547 ATATCCGG
1 ATATCCGG
37046555 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:37053544 original size:17 final size:18
Alignment explanation
Indices: 37053502--37053550 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
37053492 AGTTGAAAAG
37053502 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
37053521 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
37053538 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
37053551 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:37054438 original size:40 final size:40
Alignment explanation
Indices: 37054372--37054538 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
37054362 AAATTGAATG
* * *
37054372 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * **
37054411 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
37054451 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
37054491 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
37054531 ATATCCGG
1 ATATCCGG
37054539 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:37065931 original size:44 final size:43
Alignment explanation
Indices: 37065825--37065987 Score: 152
Period size: 44 Copynumber: 3.6 Consensus size: 43
37065815 AGCACCAATA
* *
37065825 TAAGAAATGTCTGGGACATGCATCGGCCT-CGATGAAGATAGCCAGTG
1 TAAGACATGTCTGGGACATGCATCGG-CTACGAT--AG-T-GCAAGTG
* * *
37065872 TAAGACGTGTCTGGGACATGCATCGGCTAAGCATAGTGCTAGTG
1 TAAGACATGTCTGGGACATGCATCGGCTACG-ATAGTGCAAGTG
*
37065916 TAAGACATGTCTGGGACATGCATCGGC-ACGTATATATG-AAGTG
1 TAAGACATGTCTGGGACATGCATCGGCTACG-ATA-GTGCAAGTG
*
37065959 TAAGACCATGTCTAGGACATGGCATCGGC
1 TAAGA-CATGTCTGGGACAT-GCATCGGC
37065988 CTCAATGAAG
Statistics
Matches: 101, Mismatches: 10, Indels: 12
0.82 0.08 0.10
Matches are distributed among these distances:
43 14 0.14
44 47 0.47
45 9 0.09
46 4 0.04
47 25 0.25
48 2 0.02
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.23
Consensus pattern (43 bp):
TAAGACATGTCTGGGACATGCATCGGCTACGATAGTGCAAGTG
Found at i:37066875 original size:55 final size:55
Alignment explanation
Indices: 37066766--37066876 Score: 154
Period size: 55 Copynumber: 2.0 Consensus size: 55
37066756 ATTGTCACGA
* *
37066766 GTAGGCCACACGGGCGTGGGTCATAGCCGTGTCTATAAGTCAATTTTGTCCACAG
1 GTAGGCCACACGGGCGTGGGCCATAGCCGTGTCTATAAGTCAATGTTGTCCACAG
* *
37066821 GTAGGCCACACGGGCGTGTGCCATGGCCGTGTCCTA-AAGTCAATGTTG-CACACAG
1 GTAGGCCACACGGGCGTGGGCCATAGCCGTGT-CTATAAGTCAATGTTGTC-CACAG
37066876 G
1 G
37066877 CTAAGGGCAT
Statistics
Matches: 50, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
54 1 0.02
55 46 0.92
56 3 0.06
ACGTcount: A:0.22, C:0.25, G:0.31, T:0.23
Consensus pattern (55 bp):
GTAGGCCACACGGGCGTGGGCCATAGCCGTGTCTATAAGTCAATGTTGTCCACAG
Found at i:37067410 original size:22 final size:23
Alignment explanation
Indices: 37067385--37067430 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
37067375 CAACCAAACC
37067385 AATTCA-ACATATTT-TCAAGATA
1 AATTCATACATATTTAT-AAGATA
*
37067407 AATTCATGCATATTTATAAGATA
1 AATTCATACATATTTATAAGATA
37067430 A
1 A
37067431 CGTCATCACA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 6 0.29
23 14 0.67
24 1 0.05
ACGTcount: A:0.46, C:0.11, G:0.07, T:0.37
Consensus pattern (23 bp):
AATTCATACATATTTATAAGATA
Found at i:37067436 original size:23 final size:23
Alignment explanation
Indices: 37067392--37067436 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
37067382 ACCAATTCAA
*
37067392 CATATTTTCAAGATAAATTCATG
1 CATATTTTCAAGATAAAGTCATG
*
37067415 CATATTTAT-AAGATAACGTCAT
1 CATATTT-TCAAGATAAAGTCAT
37067437 CACATACCCA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.40, C:0.13, G:0.09, T:0.38
Consensus pattern (23 bp):
CATATTTTCAAGATAAAGTCATG
Found at i:37075181 original size:22 final size:23
Alignment explanation
Indices: 37075156--37075201 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
37075146 CAACCAAACC
37075156 AATTCA-ACATATTT-TCAAGATA
1 AATTCATACATATTTAT-AAGATA
*
37075178 AATTCATGCATATTTATAAGATA
1 AATTCATACATATTTATAAGATA
37075201 A
1 A
37075202 CATCATCACA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 6 0.29
23 14 0.67
24 1 0.05
ACGTcount: A:0.46, C:0.11, G:0.07, T:0.37
Consensus pattern (23 bp):
AATTCATACATATTTATAAGATA
Found at i:37083622 original size:41 final size:42
Alignment explanation
Indices: 37083544--37083649 Score: 187
Period size: 41 Copynumber: 2.5 Consensus size: 42
37083534 TATTGGTCTC
37083544 GGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGATT
1 GGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGATT
37083586 GGCACTAAGTGTGCGGGTAT-AATGGACACGGTGACAAGATT
1 GGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGATT
* *
37083627 GGCACTACGTGTGCGGGTTTAAA
1 GGCACTAAGTGTGCGGGTATAAA
37083650 ATTGTACAGC
Statistics
Matches: 61, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
41 39 0.64
42 22 0.36
ACGTcount: A:0.28, C:0.15, G:0.34, T:0.23
Consensus pattern (42 bp):
GGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGATT
Found at i:37083714 original size:27 final size:28
Alignment explanation
Indices: 37083657--37083726 Score: 97
Period size: 27 Copynumber: 2.5 Consensus size: 28
37083647 AAAATTGTAC
**
37083657 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
* *
37083685 AGCACTATGTGTGCG-AGCTGATTTTAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
37083712 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
37083727 GATTCACTAT
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
27 23 0.62
28 14 0.38
ACGTcount: A:0.27, C:0.14, G:0.26, T:0.33
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAAGCTGATTATAT
Found at i:37090821 original size:42 final size:42
Alignment explanation
Indices: 37090774--37090879 Score: 187
Period size: 41 Copynumber: 2.5 Consensus size: 42
37090764 TATTGGTCTC
37090774 GGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGATT
1 GGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGATT
37090816 GGCACTAAGTGTGC-GGTATAAATGGACACGGTGACAAGATT
1 GGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGATT
* *
37090857 GGCACTACGTGTGCGGGTTTAAA
1 GGCACTAAGTGTGCGGGTATAAA
37090880 ATTGTACAGC
Statistics
Matches: 61, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
41 40 0.66
42 21 0.34
ACGTcount: A:0.29, C:0.15, G:0.33, T:0.23
Consensus pattern (42 bp):
GGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGATT
Found at i:37090944 original size:27 final size:28
Alignment explanation
Indices: 37090887--37090956 Score: 97
Period size: 27 Copynumber: 2.5 Consensus size: 28
37090877 AAAATTGTAC
**
37090887 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
* *
37090915 AGCACTATGTGTGCG-AGCTGATTTTAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
37090942 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
37090957 GATTCACTAT
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
27 23 0.62
28 14 0.38
ACGTcount: A:0.27, C:0.14, G:0.26, T:0.33
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAAGCTGATTATAT
Found at i:37093990 original size:15 final size:15
Alignment explanation
Indices: 37093967--37094000 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
37093957 CCAGGAACAT
*
37093967 CTCCTATACCAATAG
1 CTCCGATACCAATAG
37093982 CTCCGATACCAATAG
1 CTCCGATACCAATAG
37093997 CTCC
1 CTCC
37094001 TTACAGAATG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.29, C:0.38, G:0.09, T:0.24
Consensus pattern (15 bp):
CTCCGATACCAATAG
Found at i:37097917 original size:46 final size:46
Alignment explanation
Indices: 37097776--37097948 Score: 192
Period size: 46 Copynumber: 3.8 Consensus size: 46
37097766 GGTTGAGCAT
* *
37097776 CCGAACTCGTTGAGTTGAGTCCGAGTTCA-TTATGGATGCGAATGT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
* * * * * *
37097821 CCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGAATGTA-AC-TAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACT-TATGGATGCGAACGC
*
37097865 ATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
* *
37097913 CCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
37097949 GCGGGTTACA
Statistics
Matches: 107, Mismatches: 14, Indels: 13
0.80 0.10 0.10
Matches are distributed among these distances:
44 2 0.02
45 30 0.28
46 70 0.65
47 2 0.02
48 3 0.03
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
Found at i:37097936 original size:92 final size:91
Alignment explanation
Indices: 37097772--37097941 Score: 295
Period size: 92 Copynumber: 1.9 Consensus size: 91
37097762 GGATGGTTGA
* *
37097772 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTATGGATGCGAATGTCCGAACTCGTTGAGTT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTATGGATGCGAACGCCCGAACTCGTTGAGTT
37097837 GAGTCCGAGTTCGTGAATGTAACTAG
66 GAGTCCGAGTTCGTGAATGTAACTAG
* *
37097863 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCA-TTATGGATGCGAACGCCCGAACTCGTTGAGT
37097928 TGAGTCCGAGTTCG
65 TGAGTCCGAGTTCG
37097942 CTTATGGGCG
Statistics
Matches: 74, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
91 32 0.43
92 42 0.57
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (91 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTATGGATGCGAACGCCCGAACTCGTTGAGTT
GAGTCCGAGTTCGTGAATGTAACTAG
Found at i:37105365 original size:46 final size:45
Alignment explanation
Indices: 37105315--37105489 Score: 203
Period size: 46 Copynumber: 3.8 Consensus size: 45
37105305 TGGTTGAGCA
37105315 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* * * *
37105361 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGAATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACT-TATG-GA-T-GCGAAG
*
37105407 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* * *
37105453 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
37105490 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 11, Indels: 16
0.80 0.08 0.12
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 2 0.02
46 98 0.89
47 2 0.02
48 3 0.03
49 1 0.01
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:37105469 original size:92 final size:92
Alignment explanation
Indices: 37105312--37105482 Score: 306
Period size: 92 Copynumber: 1.9 Consensus size: 92
37105302 GGATGGTTGA
* *
37105312 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
37105377 TGAGTCCGAGTTCGTGAATGTAACTAG
66 TGAGTCCGAGTTCGTGAATGTAACTAG
* *
37105404 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
37105469 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
37105483 CTTATGGGCG
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
92 75 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (92 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAATGTAACTAG
Found at i:37116361 original size:40 final size:40
Alignment explanation
Indices: 37116196--37116363 Score: 151
Period size: 40 Copynumber: 4.2 Consensus size: 40
37116186 AAATTGAATG
* * * * **
37116196 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-GAAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGC-GAGTGATT
* * * * * **
37116236 ATATCCGGGTTAAGACCCGAAGGCAATTGGGCTAGAGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATT
* *
37116276 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATT
* *
37116316 CTATCCGGGCTAAGACCCGATGGCATTTGTGC-ACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGATT
37116356 ATATCCGG
1 ATATCCGG
37116364 TTATATTCCG
Statistics
Matches: 103, Mismatches: 23, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
39 1 0.01
40 102 0.99
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATT
Found at i:37129538 original size:43 final size:44
Alignment explanation
Indices: 37129469--37129561 Score: 136
Period size: 43 Copynumber: 2.2 Consensus size: 44
37129459 TCCTAATTAG
*
37129469 GAAAATAGTTTCCTTATTCTAATAAACTACTAAAACATAAAA-A
1 GAAAATAGTTCCCTTATTCTAATAAACTACTAAAACATAAAATA
* * *
37129512 GAAAATAGTTCCCTTATTTTAGTAAACTACTAAAAGATAAAATA
1 GAAAATAGTTCCCTTATTCTAATAAACTACTAAAACATAAAATA
37129556 -AAAATA
1 GAAAATA
37129562 TTTCTAGAAT
Statistics
Matches: 45, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
43 44 0.98
44 1 0.02
ACGTcount: A:0.52, C:0.12, G:0.06, T:0.30
Consensus pattern (44 bp):
GAAAATAGTTCCCTTATTCTAATAAACTACTAAAACATAAAATA
Found at i:37129605 original size:19 final size:18
Alignment explanation
Indices: 37129583--37129622 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 18
37129573 TGAATAAAAC
37129583 TTATCTATCC-AAATAAGAT
1 TTATCTA-CCTAAATAA-AT
37129602 TTATCTACCTAAATAAAT
1 TTATCTACCTAAATAAAT
37129620 TTA
1 TTA
37129623 AAATATATAC
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
18 7 0.35
19 13 0.65
ACGTcount: A:0.42, C:0.15, G:0.03, T:0.40
Consensus pattern (18 bp):
TTATCTACCTAAATAAAT
Found at i:37134269 original size:43 final size:44
Alignment explanation
Indices: 37134200--37134292 Score: 145
Period size: 43 Copynumber: 2.2 Consensus size: 44
37134190 TCCTAATTGG
37134200 GAAAATAGTTCCCTTATTCTAATAAACTACTAAAACATAAAA-A
1 GAAAATAGTTCCCTTATTCTAATAAACTACTAAAACATAAAATA
* * *
37134243 GAAAATAGTTCCCTTATTTTAGTAAACTACTAAAAGATAAAATA
1 GAAAATAGTTCCCTTATTCTAATAAACTACTAAAACATAAAATA
37134287 -AAAATA
1 GAAAATA
37134293 TTTCTAGAAT
Statistics
Matches: 46, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
43 45 0.98
44 1 0.02
ACGTcount: A:0.52, C:0.13, G:0.06, T:0.29
Consensus pattern (44 bp):
GAAAATAGTTCCCTTATTCTAATAAACTACTAAAACATAAAATA
Found at i:37134336 original size:19 final size:18
Alignment explanation
Indices: 37134314--37134353 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 18
37134304 TGAATAAAAC
37134314 TTATCTATCC-AAATAAGAT
1 TTATCTA-CCTAAATAA-AT
37134333 TTATCTACCTAAATAAAT
1 TTATCTACCTAAATAAAT
37134351 TTA
1 TTA
37134354 AAATATATAC
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
18 7 0.35
19 13 0.65
ACGTcount: A:0.42, C:0.15, G:0.03, T:0.40
Consensus pattern (18 bp):
TTATCTACCTAAATAAAT
Found at i:37134599 original size:27 final size:26
Alignment explanation
Indices: 37134569--37134621 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 26
37134559 ATTCTACACC
* * *
37134569 TAGGGGTATTTTGGTCATTTTCGCCTT
1 TAGGGGCATTTCGGTAATTTTC-CCTT
37134596 TAGGGGCATTTCGGTAATTTTCCCTT
1 TAGGGGCATTTCGGTAATTTTCCCTT
37134622 AATTACGGTT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
26 4 0.17
27 19 0.83
ACGTcount: A:0.13, C:0.17, G:0.25, T:0.45
Consensus pattern (26 bp):
TAGGGGCATTTCGGTAATTTTCCCTT
Found at i:37136318 original size:40 final size:39
Alignment explanation
Indices: 37136264--37136482 Score: 215
Period size: 40 Copynumber: 5.5 Consensus size: 39
37136254 GCTCGATTGT
* * * *
37136264 CTTCAGGACATAGCCCGGTTATAGTGATTCGCACAATTGC
1 CTTCGGGACTTAGCCCGGTT-TAGTAATTCGCACAAATGC
* *
37136304 CTTCGGGAATTAGCCCGGATTTAGTAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGG-TTTAGTAATTCGCACAAATGC
* * *
37136344 CTTCGGGACTTAACCCGGTTTTGGTAATTCACACAAATGC
1 CTTCGGGACTTAGCCCGG-TTTAGTAATTCGCACAAATGC
* * *
37136384 CTTCGGGACTTAACCCGGTTTTGGTAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGG-TTTAGTAATTCGCACAAATGC
* * * * *
37136424 CTTTGGGAATT-GACCCGGATTTAGTCACTTAGCACAAAAGC
1 CTTCGGGACTTAG-CCCGG-TTTAGT-AATTCGCACAAATGC
37136465 CTTCGGGACTTAGCCCGG
1 CTTCGGGACTTAGCCCGG
37136483 ATACCATTCG
Statistics
Matches: 150, Mismatches: 25, Indels: 7
0.82 0.14 0.04
Matches are distributed among these distances:
40 122 0.81
41 27 0.18
42 1 0.01
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.27
Consensus pattern (39 bp):
CTTCGGGACTTAGCCCGGTTTAGTAATTCGCACAAATGC
Found at i:37136363 original size:80 final size:79
Alignment explanation
Indices: 37136277--37136484 Score: 254
Period size: 80 Copynumber: 2.6 Consensus size: 79
37136267 CAGGACATAG
* * *
37136277 CCCGGTTATAGTGATTCGCACAATTGCCTTCGGGAATTAGCCCGGATTTAGTAACTCGCACAAAT
1 CCCGGTT-TAGTAATTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAAT
*
37136342 GCCTTCGGGACTTAA
65 GCCTTCGGGAATTAA
* * * * *
37136357 CCCGGTTTTGGTAATTCACACAAATGCCTTCGGGACTTAACCCGGTTTTGGTAACTCGCACAAAT
1 CCCGG-TTTAGTAATTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAAT
* *
37136422 GCCTTTGGGAATTGA
65 GCCTTCGGGAATTAA
* * *
37136437 CCCGGATTTAGTCACTTAGCACAAAAGCCTTCGGGACTTAGCCCGGAT
1 CCCGG-TTTAGT-AATTCGCACAAATGCCTTCGGGACTTAGCCCGGAT
37136485 ACCATTCGAA
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
80 76 0.71
81 31 0.29
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.27
Consensus pattern (79 bp):
CCCGGTTTAGTAATTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATG
CCTTCGGGAATTAA
Found at i:37138252 original size:28 final size:29
Alignment explanation
Indices: 37138216--37138276 Score: 88
Period size: 28 Copynumber: 2.1 Consensus size: 29
37138206 TCACATACCT
*
37138216 ATATCGGCCCATTAAGCCCAATCATATTC
1 ATATCGGCCCATTAAGCCCAATCACATTC
* *
37138245 ATAT-GGCCCATTAGGCCCAGTCACATTC
1 ATATCGGCCCATTAAGCCCAATCACATTC
37138273 ATAT
1 ATAT
37138277 TCATGCTCAC
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
28 25 0.86
29 4 0.14
ACGTcount: A:0.30, C:0.30, G:0.13, T:0.28
Consensus pattern (29 bp):
ATATCGGCCCATTAAGCCCAATCACATTC
Found at i:37139827 original size:16 final size:16
Alignment explanation
Indices: 37139802--37139833 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
37139792 AAGTTCAAGA
*
37139802 TTTCGGGATTTTTAGG
1 TTTCGAGATTTTTAGG
37139818 TTTCGAGATTTTTAGG
1 TTTCGAGATTTTTAGG
37139834 GCGTTACAAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.16, C:0.06, G:0.28, T:0.50
Consensus pattern (16 bp):
TTTCGAGATTTTTAGG
Found at i:37140143 original size:18 final size:19
Alignment explanation
Indices: 37140117--37140157 Score: 50
Period size: 18 Copynumber: 2.2 Consensus size: 19
37140107 TGCCTCTCGG
37140117 CGGTAGCTG-ACCACC-CCT
1 CGGTAGCTGTA-CACCACCT
*
37140135 CGGTGGCTGTACACCACCT
1 CGGTAGCTGTACACCACCT
37140154 CGGT
1 CGGT
37140158 CCACGGCTGG
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
18 12 0.60
19 8 0.40
ACGTcount: A:0.15, C:0.39, G:0.27, T:0.20
Consensus pattern (19 bp):
CGGTAGCTGTACACCACCT
Found at i:37140376 original size:22 final size:23
Alignment explanation
Indices: 37140351--37140409 Score: 61
Period size: 23 Copynumber: 2.6 Consensus size: 23
37140341 CAACCAAATC
37140351 AATTCA-ACATATTT-TCAAGATA
1 AATTCATACATATTTAT-AAGATA
*
37140373 AATTCATGCATATTTATAAGATA
1 AATTCATACATATTTATAAGATA
37140396 ACA-TCATCACATAT
1 A-ATTCAT-ACATAT
37140410 CTAAAACCAG
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
22 6 0.19
23 18 0.58
24 7 0.23
ACGTcount: A:0.44, C:0.15, G:0.05, T:0.36
Consensus pattern (23 bp):
AATTCATACATATTTATAAGATA
Found at i:37145557 original size:16 final size:17
Alignment explanation
Indices: 37145525--37145563 Score: 62
Period size: 16 Copynumber: 2.4 Consensus size: 17
37145515 ATAAAGAAAG
37145525 TTTGGGATTTCGAGATT
1 TTTGGGATTTCGAGATT
*
37145542 TTTGGG-TTTTGAGATT
1 TTTGGGATTTCGAGATT
37145558 TTTGGG
1 TTTGGG
37145564 GCGTTACAGG
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
16 15 0.71
17 6 0.29
ACGTcount: A:0.13, C:0.03, G:0.33, T:0.51
Consensus pattern (17 bp):
TTTGGGATTTCGAGATT
Found at i:37151601 original size:10 final size:10
Alignment explanation
Indices: 37151586--37151616 Score: 62
Period size: 10 Copynumber: 3.1 Consensus size: 10
37151576 AAGTAGTATG
37151586 ATTTTGTCTA
1 ATTTTGTCTA
37151596 ATTTTGTCTA
1 ATTTTGTCTA
37151606 ATTTTGTCTA
1 ATTTTGTCTA
37151616 A
1 A
37151617 GTCTTATAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.23, C:0.10, G:0.10, T:0.58
Consensus pattern (10 bp):
ATTTTGTCTA
Found at i:37161014 original size:27 final size:27
Alignment explanation
Indices: 37160973--37161026 Score: 90
Period size: 27 Copynumber: 2.0 Consensus size: 27
37160963 GGAAAAAATC
37160973 ACCATGTCTCACAAAAGAACAAGATCT
1 ACCATGTCTCACAAAAGAACAAGATCT
* *
37161000 ACCATGTCTCGCAAAAGAACTAGATCT
1 ACCATGTCTCACAAAAGAACAAGATCT
37161027 TCTAAGACCT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.41, C:0.26, G:0.13, T:0.20
Consensus pattern (27 bp):
ACCATGTCTCACAAAAGAACAAGATCT
Found at i:37164038 original size:20 final size:19
Alignment explanation
Indices: 37164000--37164038 Score: 51
Period size: 20 Copynumber: 2.0 Consensus size: 19
37163990 AGATGATGGC
**
37164000 TTATTTTATTTTATTAATT
1 TTATTTTATTTTACAAATT
37164019 TTATCTTTATTTTACAAATT
1 TTAT-TTTATTTTACAAATT
37164039 ACATTATTAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 4 0.24
20 13 0.76
ACGTcount: A:0.28, C:0.05, G:0.00, T:0.67
Consensus pattern (19 bp):
TTATTTTATTTTACAAATT
Found at i:37183287 original size:12 final size:12
Alignment explanation
Indices: 37183272--37183305 Score: 54
Period size: 10 Copynumber: 3.0 Consensus size: 12
37183262 GAAAAAGTGT
37183272 AGAAAAACTAAA
1 AGAAAAACTAAA
37183284 AGAAAAACT--A
1 AGAAAAACTAAA
37183294 AGAAAAACTAAA
1 AGAAAAACTAAA
37183306 GCTAAACTAC
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
10 10 0.50
12 10 0.50
ACGTcount: A:0.74, C:0.09, G:0.09, T:0.09
Consensus pattern (12 bp):
AGAAAAACTAAA
Found at i:37187550 original size:42 final size:41
Alignment explanation
Indices: 37187488--37187609 Score: 136
Period size: 43 Copynumber: 2.9 Consensus size: 41
37187478 TAAGGTTAGT
*
37187488 TGAGATTGCGTGTAACACCATATCTAGGATATGGCATCAATA
1 TGAGATT-CGTGTAAGACCATATCTAGGATATGGCATCAATA
* * *
37187530 TGAGACTTCGTGTAAGACCATAGCTAGGCTATTGGCATCGATA
1 TGAGA-TTCGTGTAAGACCATATCTAGGATA-TGGCATCAATA
* * * *
37187573 TGAGATCCCATGTAAGACCACATCTGGGATATGGCAT
1 TGAGAT-TCGTGTAAGACCATATCTAGGATATGGCAT
37187610 TAGTATGGTA
Statistics
Matches: 67, Mismatches: 10, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
42 32 0.48
43 35 0.52
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.27
Consensus pattern (41 bp):
TGAGATTCGTGTAAGACCATATCTAGGATATGGCATCAATA
Found at i:37188231 original size:17 final size:17
Alignment explanation
Indices: 37188209--37188244 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
37188199 GTATATTTGT
37188209 GATGTTATTGCATGATA
1 GATGTTATTGCATGATA
*
37188226 GATGTTATTGCATGGTA
1 GATGTTATTGCATGATA
37188243 GA
1 GA
37188245 GTGTAGATGA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.28, C:0.06, G:0.28, T:0.39
Consensus pattern (17 bp):
GATGTTATTGCATGATA
Found at i:37188719 original size:20 final size:20
Alignment explanation
Indices: 37188694--37188747 Score: 90
Period size: 20 Copynumber: 2.7 Consensus size: 20
37188684 CACGACCTAC
37188694 CCACATGGGCGTGTCCCAAG
1 CCACATGGGCGTGTCCCAAG
*
37188714 CCACATGGGCATGTCCCAAG
1 CCACATGGGCGTGTCCCAAG
*
37188734 CCACACGGGCGTGT
1 CCACATGGGCGTGT
37188748 GACCCTATTT
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.20, C:0.35, G:0.30, T:0.15
Consensus pattern (20 bp):
CCACATGGGCGTGTCCCAAG
Found at i:37190853 original size:27 final size:27
Alignment explanation
Indices: 37190808--37190905 Score: 133
Period size: 27 Copynumber: 3.6 Consensus size: 27
37190798 TAAAACATGC
* *
37190808 TATGAAAGAGTAGCATTCATGGCAAAA
1 TATGAAAGAGTAGCCTTCATGGCGAAA
* * *
37190835 TATGAAAGAGCAGCCTTCATCGTGAAA
1 TATGAAAGAGTAGCCTTCATGGCGAAA
37190862 TATGAAAGAGTAGCCTTCATGGCGAAA
1 TATGAAAGAGTAGCCTTCATGGCGAAA
* *
37190889 TATAAAAAAGTAGCCTT
1 TATGAAAGAGTAGCCTT
37190906 TGTGGAGTGT
Statistics
Matches: 61, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 61 1.00
ACGTcount: A:0.41, C:0.14, G:0.21, T:0.23
Consensus pattern (27 bp):
TATGAAAGAGTAGCCTTCATGGCGAAA
Found at i:37193102 original size:34 final size:34
Alignment explanation
Indices: 37193014--37193104 Score: 105
Period size: 34 Copynumber: 2.7 Consensus size: 34
37193004 TTATGCATTG
* *
37193014 CTGATACTG-TACTAAAATGGGCTAAGGCCCACA
1 CTGATAATGCTACTAATATGGGCTAAGGCCCACA
* * *
37193047 CTGTTAATACTACT-GTAATGGGCTAAGGCCCACA
1 CTGATAATGCTACTAAT-ATGGGCTAAGGCCCACA
*
37193081 CTGATATTGCTACTAATATGGGCT
1 CTGATAATGCTACTAATATGGGCT
37193105 TATGCCAGCT
Statistics
Matches: 46, Mismatches: 9, Indels: 5
0.77 0.15 0.08
Matches are distributed among these distances:
33 6 0.13
34 39 0.85
35 1 0.02
ACGTcount: A:0.30, C:0.22, G:0.21, T:0.27
Consensus pattern (34 bp):
CTGATAATGCTACTAATATGGGCTAAGGCCCACA
Found at i:37200170 original size:40 final size:39
Alignment explanation
Indices: 37200125--37200298 Score: 161
Period size: 40 Copynumber: 4.3 Consensus size: 39
37200115 CGGAATATAA
*
37200125 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCCTAGC
1 CCGGATATAATCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * * *
37200165 CCGGATAGAATAACCCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCA-CTGCACAAATGCCTTCGGGTCTTAGC
** * *
37200205 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACT-GCACAAATGCCTTCGGGTCTTAGC
* * * * *
37200245 CCGGATATAATTTC-CAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAA--TCACTGCACAAATGCCTTCGGGTCTTAGC
37200285 CCGGATATCAATCA
1 CCGGATAT-AATCA
37200299 ATTTCTCATG
Statistics
Matches: 108, Mismatches: 20, Indels: 12
0.77 0.14 0.09
Matches are distributed among these distances:
39 3 0.03
40 100 0.93
41 4 0.04
42 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (39 bp):
CCGGATATAATCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:37200275 original size:80 final size:80
Alignment explanation
Indices: 37200141--37200292 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 80
37200131 ATAATCACGT
* * *
37200141 GCACAAATGCCTTCGGGTCCTAGCCCGGATAGAATAACCCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCCTAACCCGGATAGAATAACCAGCACGAATGCCTTCGGGGCTTAGCC
37200206 CGGATATAGCCACTA
66 CGGATATAGCCACTA
* * * ** * *
37200221 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCAGCA-TAATTGTCTTCGGGGCTTAGC
1 GCACAAATGCCTTCGGGTCCTAACCCGGATAGAATAACCAGCACGAA-TGCCTTCGGGGCTTAGC
37200285 CCGGATAT
65 CCGGATAT
37200293 CAATCAATTT
Statistics
Matches: 61, Mismatches: 10, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
79 2 0.03
80 59 0.97
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.25
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCCTAACCCGGATAGAATAACCAGCACGAATGCCTTCGGGGCTTAGCC
CGGATATAGCCACTA
Found at i:37207080 original size:40 final size:39
Alignment explanation
Indices: 37206954--37207082 Score: 154
Period size: 40 Copynumber: 3.3 Consensus size: 39
37206944 CGGAATATAA
37206954 CCGGATATAAC-ACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACAAC-TAGCAC-AATGCCTTCGGGTCTTAGC
* * *
37206993 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTAGCAC-AATGCCTTCGGGTCTTAGC
* * *
37207033 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACAACTAGCACAA-TGCCTTCGGGTCTTAGC
37207073 CCGGATATAA
1 CCGGATATAA
37207083 TTTCCAGCAT
Statistics
Matches: 77, Mismatches: 10, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
39 12 0.16
40 65 0.84
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.23
Consensus pattern (39 bp):
CCGGATATAACAACTAGCACAATGCCTTCGGGTCTTAGC
Found at i:37207097 original size:40 final size:40
Alignment explanation
Indices: 37206969--37207124 Score: 138
Period size: 40 Copynumber: 3.9 Consensus size: 40
37206959 TATAACACGT
* * *
37206969 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTC-
1 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATAAC-CA
* *** *
37207009 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAGCCACTA
1 GCAC-AATTGCCTTCGGGTCTTAACCCGGATATAATAACCA
**
37207049 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATAACCA
* * * * *
37207089 GCATAATTGTCTTCGGGGCTT-AGCCGGATATCATAA
1 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATAA
37207125 TTTCTCATGC
Statistics
Matches: 95, Mismatches: 18, Indels: 7
0.79 0.15 0.06
Matches are distributed among these distances:
39 13 0.14
40 80 0.84
41 2 0.02
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.26
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAACCCGGATATAATAACCA
Found at i:37207103 original size:80 final size:79
Alignment explanation
Indices: 37206969--37207119 Score: 189
Period size: 80 Copynumber: 1.9 Consensus size: 79
37206959 TATAACACGT
* *
37206969 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGGCTTAG-C
37207034 CGGATATAGCCACTA
65 CGGATATAGCCACTA
* * ** * *
37207049 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGGCTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGGCTTAG
37207112 CCGGATAT
64 CCGGATAT
37207120 CATAATTTCT
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
79 11 0.18
80 50 0.82
ACGTcount: A:0.24, C:0.26, G:0.23, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGGCTTAGCC
GGATATAGCCACTA
Found at i:37214953 original size:40 final size:40
Alignment explanation
Indices: 37214908--37215074 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
37214898 CGGAATATAA
37214908 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
37214948 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
37214988 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
37215028 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
37215067 CCGGATAT
1 CCGGATAT
37215075 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:37218783 original size:34 final size:33
Alignment explanation
Indices: 37218718--37218793 Score: 89
Period size: 34 Copynumber: 2.2 Consensus size: 33
37218708 ACTGTACTAA
* **
37218718 AATGGTCTAAGGCCCACACTGTTAATACTACTG
1 AATGGGCTAAGGCCCACACTAATAATACTACTG
* *
37218751 TAATGGGCTAAGGCCCACACTAATATTGCTACTG
1 -AATGGGCTAAGGCCCACACTAATAATACTACTG
37218785 ATATGGGCT
1 A-ATGGGCT
37218794 TAAGCCAGCT
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
33 1 0.03
34 35 0.97
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.28
Consensus pattern (33 bp):
AATGGGCTAAGGCCCACACTAATAATACTACTG
Found at i:37219417 original size:27 final size:27
Alignment explanation
Indices: 37219353--37219424 Score: 90
Period size: 27 Copynumber: 2.7 Consensus size: 27
37219343 TGGGGTGTTA
* *
37219353 CATGGAGAAATATGAAAGAGTATCTTT
1 CATGGAGAAATATGAAAGAGTAGCCTT
* * *
37219380 CACGGTGAAATATAAAAGAGTAGCCTT
1 CATGGAGAAATATGAAAGAGTAGCCTT
*
37219407 CATGGAAAAATATGAAAG
1 CATGGAGAAATATGAAAG
37219425 GGTTTGGTGA
Statistics
Matches: 36, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
27 36 1.00
ACGTcount: A:0.44, C:0.10, G:0.22, T:0.24
Consensus pattern (27 bp):
CATGGAGAAATATGAAAGAGTAGCCTT
Found at i:37227096 original size:28 final size:28
Alignment explanation
Indices: 37227060--37227127 Score: 127
Period size: 28 Copynumber: 2.4 Consensus size: 28
37227050 ATCAAATGCC
37227060 CACACGGCCTGGGACACAGACGTGTCAT
1 CACACGGCCTGGGACACAGACGTGTCAT
*
37227088 CACATGGCCTGGGACACAGACGTGTCAT
1 CACACGGCCTGGGACACAGACGTGTCAT
37227116 CACACGGCCTGG
1 CACACGGCCTGG
37227128 TCACACGGAC
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 38 1.00
ACGTcount: A:0.24, C:0.32, G:0.29, T:0.15
Consensus pattern (28 bp):
CACACGGCCTGGGACACAGACGTGTCAT
Found at i:37228090 original size:143 final size:141
Alignment explanation
Indices: 37227882--37228176 Score: 563
Period size: 143 Copynumber: 2.1 Consensus size: 141
37227872 TGAGTTAAAT
*
37227882 TTCGGCCATGCATGTTGTTTTCCTTGGTGAGTGTTTTGATGTTGTTGTGATGAAAGCATGGAGAT
1 TTCGGCCATGCATGTTGTCTTCCTTGGTGAGTGTTTTGATGTTGTTGTGATGAAAGCATGGAGAT
37227947 GAGTGAGTTCGAATGTTTAACAAAAAGGAAATTTTGTGCCATTGAGTTCTTGTTGTTATGTGTGT
66 GAGTGAGTTCGAATGTTTAACAAAAAGGAAATTTTGTGCCATTGAGTTCTTGTTGTTA--TGTGT
37228012 GTGTGCATGAGTA
129 GTGTGCATGAGTA
37228025 TTCGGCCATGCATGTTGTCTTCCTTGGTGAGTGTTTTGATGTTGTTGTGATGAAAGCATGGAGAT
1 TTCGGCCATGCATGTTGTCTTCCTTGGTGAGTGTTTTGATGTTGTTGTGATGAAAGCATGGAGAT
37228090 GAGTGAGTTCGAATGTTTAACAAAAAGGAAATTTTGTGCCATTGAGTTCTTGTTGTTATGTGTGT
66 GAGTGAGTTCGAATGTTTAACAAAAAGGAAATTTTGTGCCATTGAGTTCTTGTTGTTATGTGTGT
37228155 GTGCATGAGTA
131 GTGCATGAGTA
37228166 TTCGGCCATGC
1 TTCGGCCATGC
37228177 TATAGAATTT
Statistics
Matches: 151, Mismatches: 1, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
141 29 0.19
143 122 0.81
ACGTcount: A:0.21, C:0.11, G:0.29, T:0.39
Consensus pattern (141 bp):
TTCGGCCATGCATGTTGTCTTCCTTGGTGAGTGTTTTGATGTTGTTGTGATGAAAGCATGGAGAT
GAGTGAGTTCGAATGTTTAACAAAAAGGAAATTTTGTGCCATTGAGTTCTTGTTGTTATGTGTGT
GTGCATGAGTA
Found at i:37228853 original size:29 final size:29
Alignment explanation
Indices: 37228820--37228951 Score: 165
Period size: 29 Copynumber: 4.6 Consensus size: 29
37228810 GTGACGAGAT
*
37228820 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
*
37228849 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
* *
37228878 AGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
* * **
37228907 TGACACTATGTGTGCAAGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
* **
37228936 CGGCACTGGGTGTGCG
1 TGGCACTAAGTGTGCG
37228952 AGCTCGAAGG
Statistics
Matches: 91, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 91 1.00
ACGTcount: A:0.30, C:0.15, G:0.31, T:0.24
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAAAATA
Found at i:37236043 original size:143 final size:141
Alignment explanation
Indices: 37235835--37236129 Score: 563
Period size: 143 Copynumber: 2.1 Consensus size: 141
37235825 TGAGTTAAAT
*
37235835 TTCGGCCATGCATGTTGTTTTCCTTGGTGAGTGTTTTGATGTTGTTGTGATGAAAGCATGGAGAT
1 TTCGGCCATGCATGTTGTCTTCCTTGGTGAGTGTTTTGATGTTGTTGTGATGAAAGCATGGAGAT
37235900 GAGTGAGTTCGAATGTTTAACAAAAAGGAAATTTTGTGCCATTGAGTTCTTGTTGTTATGTGTGT
66 GAGTGAGTTCGAATGTTTAACAAAAAGGAAATTTTGTGCCATTGAGTTCTTGTTGTTA--TGTGT
37235965 GTGTGCATGAGTA
129 GTGTGCATGAGTA
37235978 TTCGGCCATGCATGTTGTCTTCCTTGGTGAGTGTTTTGATGTTGTTGTGATGAAAGCATGGAGAT
1 TTCGGCCATGCATGTTGTCTTCCTTGGTGAGTGTTTTGATGTTGTTGTGATGAAAGCATGGAGAT
37236043 GAGTGAGTTCGAATGTTTAACAAAAAGGAAATTTTGTGCCATTGAGTTCTTGTTGTTATGTGTGT
66 GAGTGAGTTCGAATGTTTAACAAAAAGGAAATTTTGTGCCATTGAGTTCTTGTTGTTATGTGTGT
37236108 GTGCATGAGTA
131 GTGCATGAGTA
37236119 TTCGGCCATGC
1 TTCGGCCATGC
37236130 TATAGAATTT
Statistics
Matches: 151, Mismatches: 1, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
141 29 0.19
143 122 0.81
ACGTcount: A:0.21, C:0.11, G:0.29, T:0.39
Consensus pattern (141 bp):
TTCGGCCATGCATGTTGTCTTCCTTGGTGAGTGTTTTGATGTTGTTGTGATGAAAGCATGGAGAT
GAGTGAGTTCGAATGTTTAACAAAAAGGAAATTTTGTGCCATTGAGTTCTTGTTGTTATGTGTGT
GTGCATGAGTA
Found at i:37236806 original size:29 final size:29
Alignment explanation
Indices: 37236773--37236904 Score: 165
Period size: 29 Copynumber: 4.6 Consensus size: 29
37236763 GTGACGAGAT
*
37236773 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
*
37236802 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
* *
37236831 AGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
* * **
37236860 TGACACTATGTGTGCAAGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
* **
37236889 CGGCACTGGGTGTGCG
1 TGGCACTAAGTGTGCG
37236905 AGCTCGAAGG
Statistics
Matches: 91, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 91 1.00
ACGTcount: A:0.30, C:0.15, G:0.31, T:0.24
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAAAATA
Found at i:37242070 original size:27 final size:27
Alignment explanation
Indices: 37242040--37242101 Score: 79
Period size: 27 Copynumber: 2.3 Consensus size: 27
37242030 ACCCCCGATT
*
37242040 TGTAAAATTACCAAAATAACCTTGTAG
1 TGTAAAATTACCAAAATAACCCTGTAG
** *
37242067 TGTAAAATTACTGAAATACCCCTGTAG
1 TGTAAAATTACCAAAATAACCCTGTAG
*
37242094 GGTAAAAT
1 TGTAAAAT
37242102 GACAGTTTTG
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.42, C:0.15, G:0.15, T:0.29
Consensus pattern (27 bp):
TGTAAAATTACCAAAATAACCCTGTAG
Found at i:37244189 original size:30 final size:28
Alignment explanation
Indices: 37244143--37244202 Score: 75
Period size: 30 Copynumber: 2.1 Consensus size: 28
37244133 TAACTTTGGT
* *
37244143 CCTTCAAATTTTAATATTTTCAATTTAA
1 CCTTCAAATTTTAATATTTACAATTGAA
*
37244171 CCTTTAAACTTTTGAATATTTACAATTGAA
1 CCTTCAAA-TTTT-AATATTTACAATTGAA
37244201 CC
1 CC
37244203 CTTTTTACTT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
28 7 0.26
29 4 0.15
30 16 0.59
ACGTcount: A:0.35, C:0.17, G:0.03, T:0.45
Consensus pattern (28 bp):
CCTTCAAATTTTAATATTTACAATTGAA
Found at i:37256878 original size:14 final size:14
Alignment explanation
Indices: 37256859--37256888 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
37256849 AAGAGAGAAT
*
37256859 GATGATGGATGAGG
1 GATGATGAATGAGG
37256873 GATGATGAATGAGG
1 GATGATGAATGAGG
37256887 GA
1 GA
37256889 ATGAAGGAGT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.33, C:0.00, G:0.47, T:0.20
Consensus pattern (14 bp):
GATGATGAATGAGG
Found at i:37260491 original size:20 final size:20
Alignment explanation
Indices: 37260466--37260519 Score: 108
Period size: 20 Copynumber: 2.7 Consensus size: 20
37260456 ACAGGGGGTC
37260466 ACACGCCCGTGTGGTTTGGG
1 ACACGCCCGTGTGGTTTGGG
37260486 ACACGCCCGTGTGGTTTGGG
1 ACACGCCCGTGTGGTTTGGG
37260506 ACACGCCCGTGTGG
1 ACACGCCCGTGTGG
37260520 GTAGGCCGTG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 34 1.00
ACGTcount: A:0.11, C:0.28, G:0.39, T:0.22
Consensus pattern (20 bp):
ACACGCCCGTGTGGTTTGGG
Found at i:37279091 original size:12 final size:13
Alignment explanation
Indices: 37279069--37279100 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
37279059 CTGTTTTAAA
37279069 TTTTA-TTTCA-T
1 TTTTATTTTCATT
37279080 TTTTATTTTCATT
1 TTTTATTTTCATT
37279093 TTTTATTT
1 TTTTATTT
37279101 GTTTATTTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
11 5 0.26
12 5 0.26
13 9 0.47
ACGTcount: A:0.16, C:0.06, G:0.00, T:0.78
Consensus pattern (13 bp):
TTTTATTTTCATT
Found at i:37282042 original size:39 final size:39
Alignment explanation
Indices: 37281994--37282117 Score: 239
Period size: 39 Copynumber: 3.2 Consensus size: 39
37281984 CGAAGTTCGA
*
37281994 ATATGATTCCCGCATATAGCCTACGGACCTTAAGTCCGG
1 ATATAATTCCCGCATATAGCCTACGGACCTTAAGTCCGG
37282033 ATATAATTCCCGCATATAGCCTACGGACCTTAAGTCCGG
1 ATATAATTCCCGCATATAGCCTACGGACCTTAAGTCCGG
37282072 ATATAATTCCCGCATATAGCCTACGGACCTTAAGTCCGG
1 ATATAATTCCCGCATATAGCCTACGGACCTTAAGTCCGG
37282111 ATATAAT
1 ATATAAT
37282118 CACCATATAT
Statistics
Matches: 84, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
39 84 1.00
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.27
Consensus pattern (39 bp):
ATATAATTCCCGCATATAGCCTACGGACCTTAAGTCCGG
Found at i:37282053 original size:78 final size:78
Alignment explanation
Indices: 37281955--37282117 Score: 227
Period size: 78 Copynumber: 2.1 Consensus size: 78
37281945 ATTAGCCCGA
** * *
37281955 ATATAATTCCAGCACATAGCCGGTGAACCCGAAGTTCGAATATGATTCCCGCATATAGCCTACGG
1 ATATAATTCCAGCACATAGCCGACGAACCCGAAGTCCGAATATAATTCCCGCATATAGCCTACGG
37282020 ACCTTAAGTCCGG
66 ACCTTAAGTCCGG
* * * * ** *
37282033 ATATAATTCCCGCATATAGCCTACGGACCTTAAGTCCGGATATAATTCCCGCATATAGCCTACGG
1 ATATAATTCCAGCACATAGCCGACGAACCCGAAGTCCGAATATAATTCCCGCATATAGCCTACGG
37282098 ACCTTAAGTCCGG
66 ACCTTAAGTCCGG
37282111 ATATAAT
1 ATATAAT
37282118 CACCATATAT
Statistics
Matches: 74, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
78 74 1.00
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.25
Consensus pattern (78 bp):
ATATAATTCCAGCACATAGCCGACGAACCCGAAGTCCGAATATAATTCCCGCATATAGCCTACGG
ACCTTAAGTCCGG
Found at i:37285460 original size:28 final size:28
Alignment explanation
Indices: 37285428--37285542 Score: 142
Period size: 29 Copynumber: 4.0 Consensus size: 28
37285418 TACCTGTATC
* *
37285428 TGGCCCATTAAGCCCAATCATATTCATA
1 TGGCCCATTAGGCCCAATCACATTCATA
*
37285456 TGGCCCATTAGGCCCACATCACCTGT-ATA
1 TGGCCCATTAGGCCCA-ATCACAT-TCATA
*
37285485 TGGCCCATTAGGCCCAAATCACATTTATA
1 TGGCCCATTAGGCCC-AATCACATTCATA
* *
37285514 TGGCCCGTTAGGCCCAGTCACATTCATA
1 TGGCCCATTAGGCCCAATCACATTCATA
37285542 T
1 T
37285543 TCATGCTTAC
Statistics
Matches: 76, Mismatches: 7, Indels: 8
0.84 0.08 0.09
Matches are distributed among these distances:
28 28 0.37
29 46 0.61
30 2 0.03
ACGTcount: A:0.27, C:0.30, G:0.16, T:0.27
Consensus pattern (28 bp):
TGGCCCATTAGGCCCAATCACATTCATA
Found at i:37285480 original size:57 final size:57
Alignment explanation
Indices: 37285414--37285529 Score: 171
Period size: 58 Copynumber: 2.0 Consensus size: 57
37285404 CAAACAAATT
* *
37285414 CACATACCTGTATCTGGCCCATTAAGCCC-AATCATATTCATATGGCCCATTAGGCC
1 CACATACCTGTATATGGCCCATTAAGCCCAAATCACATTCATATGGCCCATTAGGCC
* * *
37285470 CACATCACCTGTATATGGCCCATTAGGCCCAAATCACATTTATATGGCCCGTTAGGCC
1 CACAT-ACCTGTATATGGCCCATTAAGCCCAAATCACATTCATATGGCCCATTAGGCC
37285528 CA
1 CA
37285530 GTCACATTCA
Statistics
Matches: 53, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
56 5 0.09
57 22 0.42
58 26 0.49
ACGTcount: A:0.27, C:0.32, G:0.16, T:0.26
Consensus pattern (57 bp):
CACATACCTGTATATGGCCCATTAAGCCCAAATCACATTCATATGGCCCATTAGGCC
Found at i:37285486 original size:29 final size:29
Alignment explanation
Indices: 37285414--37285529 Score: 130
Period size: 29 Copynumber: 4.1 Consensus size: 29
37285404 CAAACAAATT
* * *
37285414 CACAT-ACCTGTATCTGGCCCATTAAGCC
1 CACATCACATGTATATGGCCCATTAGGCC
*
37285442 CA-ATCATAT-TCATATGGCCCATTAGGCC
1 CACATCACATGT-ATATGGCCCATTAGGCC
*
37285470 CACATCACCTGTATATGGCCCATTAGGCC
1 CACATCACATGTATATGGCCCATTAGGCC
* * *
37285499 CAAATCACATTTATATGGCCCGTTAGGCC
1 CACATCACATGTATATGGCCCATTAGGCC
37285528 CA
1 CA
37285530 GTCACATTCA
Statistics
Matches: 74, Mismatches: 10, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
27 3 0.04
28 21 0.28
29 49 0.66
30 1 0.01
ACGTcount: A:0.27, C:0.32, G:0.16, T:0.26
Consensus pattern (29 bp):
CACATCACATGTATATGGCCCATTAGGCC
Found at i:37288303 original size:40 final size:40
Alignment explanation
Indices: 37288266--37288447 Score: 180
Period size: 40 Copynumber: 4.6 Consensus size: 40
37288256 GCTACTCGTT
*
37288266 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* *
37288306 CAAATGCCTTCGGGACTTAACCCGGATT-TAATAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAACTCGCA
* **
37288346 C-CATGCCTTCGGG-CTTAGCCC-GAAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
* * * *
37288384 CAAATGCCTTC-GGATCTTAGTCTGGATT-TAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGG-TTATAGTAAC-TCGCA
37288425 CAAA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGACTTAGCCCG
37288448 AACATCATTC
Statistics
Matches: 115, Mismatches: 17, Indels: 20
0.76 0.11 0.13
Matches are distributed among these distances:
37 1 0.01
38 21 0.18
39 19 0.17
40 60 0.52
41 14 0.12
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:37288388 original size:78 final size:80
Alignment explanation
Indices: 37288266--37288449 Score: 214
Period size: 78 Copynumber: 2.3 Consensus size: 80
37288256 GCTACTCGTT
* **
37288266 CAAATGCCTTCGGGACATAGCCCG-GTTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAA-GCCTTCGGGACTTAGCCCGAAAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
*
37288329 GGATTTAATAAC-TCGCA
63 GGATTTAATAACTTAGCA
* * ** *
37288346 CCATGCCTTCGGG-CTTAGCCCGAAATTAGTAACTCGCACAAATGCCTTCGGATCTTAGTCTGGA
1 CAAAGCCTTCGGGACTTAGCCCGAAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
* *
37288410 TTTAGTCACTTAGCA
66 TTTAATAACTTAGCA
37288425 CAAAGCCTTCGGGACTTAGCCCGAA
1 CAAAGCCTTCGGGACTTAGCCCGAA
37288450 CATCATTCGA
Statistics
Matches: 87, Mismatches: 13, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
77 3 0.03
78 46 0.53
79 25 0.29
80 13 0.15
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (80 bp):
CAAAGCCTTCGGGACTTAGCCCGAAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TTTAATAACTTAGCA
Found at i:37298822 original size:23 final size:24
Alignment explanation
Indices: 37298776--37298822 Score: 69
Period size: 25 Copynumber: 2.0 Consensus size: 24
37298766 ATACATTTTT
37298776 TTTAAGAACAAGTTAAATAACTAAC
1 TTTAAGAACAAG-TAAATAACTAAC
*
37298801 TTTAAGAACAAG-ACATAACTAA
1 TTTAAGAACAAGTAAATAACTAA
37298823 GCAATTTATT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 9 0.43
25 12 0.57
ACGTcount: A:0.53, C:0.13, G:0.09, T:0.26
Consensus pattern (24 bp):
TTTAAGAACAAGTAAATAACTAAC
Found at i:37299865 original size:14 final size:14
Alignment explanation
Indices: 37299848--37299875 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
37299838 TCAAAATTGT
37299848 TAAAATAAAATAAA
1 TAAAATAAAATAAA
37299862 TAAAATAAAATAAA
1 TAAAATAAAATAAA
37299876 AGTAAAAACA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (14 bp):
TAAAATAAAATAAA
Found at i:37299872 original size:10 final size:10
Alignment explanation
Indices: 37299848--37299882 Score: 54
Period size: 9 Copynumber: 3.5 Consensus size: 10
37299838 TCAAAATTGT
37299848 TAAAATAAAA
1 TAAAATAAAA
37299858 T-AAATAAAA
1 TAAAATAAAA
37299867 TAAAATAAAA
1 TAAAATAAAA
37299877 GTAAAA
1 -TAAAA
37299883 ACATAAAATA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
9 9 0.39
10 9 0.39
11 5 0.22
ACGTcount: A:0.77, C:0.00, G:0.03, T:0.20
Consensus pattern (10 bp):
TAAAATAAAA
Found at i:37299872 original size:19 final size:19
Alignment explanation
Indices: 37299848--37299893 Score: 67
Period size: 19 Copynumber: 2.4 Consensus size: 19
37299838 TCAAAATTGT
37299848 TAAAATAAAA-TAAATAAAA
1 TAAAATAAAAGTAAA-AAAA
*
37299867 TAAAATAAAAGTAAAAACA
1 TAAAATAAAAGTAAAAAAA
37299886 TAAAATAA
1 TAAAATAA
37299894 TAAATGAAAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
19 21 0.84
20 4 0.16
ACGTcount: A:0.76, C:0.02, G:0.02, T:0.20
Consensus pattern (19 bp):
TAAAATAAAAGTAAAAAAA
Found at i:37299893 original size:5 final size:5
Alignment explanation
Indices: 37299848--37299882 Score: 54
Period size: 5 Copynumber: 7.0 Consensus size: 5
37299838 TCAAAATTGT
37299848 TAAAA TAAAA T-AAA TAAAA TAAAA TAAAA GTAAAA
1 TAAAA TAAAA TAAAA TAAAA TAAAA TAAAA -TAAAA
37299883 ACATAAAATA
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
4 4 0.14
5 19 0.68
6 5 0.18
ACGTcount: A:0.77, C:0.00, G:0.03, T:0.20
Consensus pattern (5 bp):
TAAAA
Found at i:37309095 original size:40 final size:39
Alignment explanation
Indices: 37308968--37309097 Score: 163
Period size: 40 Copynumber: 3.3 Consensus size: 39
37308958 ATGCTGGAAA
* *
37308968 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGCGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-AGTGG
* * *
37309008 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGC-AGTGG
*
37309048 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGCACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCA-GTGG
37309088 TTATATCCGG
1 TTATATCCGG
37309098 TTGTATTCCG
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 4 0.05
40 73 0.95
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.23
Consensus pattern (39 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCAGTGG
Found at i:37314002 original size:9 final size:9
Alignment explanation
Indices: 37313990--37314205 Score: 90
Period size: 9 Copynumber: 23.1 Consensus size: 9
37313980 AAGTTATTCG
37313990 AATTATGTA
1 AATTATGTA
37313999 AATTATGTA
1 AATTATGTA
*
37314008 CGA-TATGATA
1 -AATTATG-TA
37314018 TATATCTATGT-
1 -A-AT-TATGTA
37314029 -ATTATGTA
1 AATTATGTA
*
37314037 AGTTATGTA
1 AATTATGTA
37314046 AATTATGTA
1 AATTATGTA
* *
37314055 AGTTGT-TCA
1 AATTATGT-A
**
37314064 TCTTATGTA
1 AATTATGTA
37314073 AATTATGTA
1 AATTATGTA
37314082 AGA-TATGATA
1 A-ATTATG-TA
37314092 TATATTTATGT-
1 -A-A-TTATGTA
37314103 -ATTATGTA
1 AATTATGTA
*
37314111 AGTTATGTA
1 AATTATGTA
37314120 AATTATGTA
1 AATTATGTA
* * *
37314129 ATTTGTTTA
1 AATTATGTA
**
37314138 TTTTATGTA
1 AATTATGTA
37314147 AATTATGTA
1 AATTATGTA
*
37314156 AGATATGATATA
1 A-AT-T-ATGTA
37314168 TATATTTATGT-
1 -A-A-TTATGTA
37314179 -ATTATGTA
1 AATTATGTA
*
37314187 AGTTATGTA
1 AATTATGTA
37314196 AATTATGTA
1 AATTATGTA
37314205 A
1 A
37314206 GATATGATAT
Statistics
Matches: 156, Mismatches: 28, Indels: 46
0.68 0.12 0.20
Matches are distributed among these distances:
7 17 0.11
8 5 0.03
9 100 0.64
10 9 0.06
11 4 0.03
12 9 0.06
13 11 0.07
14 1 0.01
ACGTcount: A:0.37, C:0.02, G:0.14, T:0.48
Consensus pattern (9 bp):
AATTATGTA
Found at i:37314052 original size:18 final size:18
Alignment explanation
Indices: 37314029--37314211 Score: 103
Period size: 18 Copynumber: 10.8 Consensus size: 18
37314019 ATATCTATGT
37314029 ATTATGTAAGTTATGTAA
1 ATTATGTAAGTTATGTAA
* *
37314047 ATTATGTAAGTTGT-TCAT
1 ATTATGTAAGTTATGT-AA
* *
37314065 CTTATGTAAATTATGTAA
1 ATTATGTAAGTTATGTAA
* *
37314083 GATATGATATATATTTATGT--
1 -AT-T-ATGTA-AGTTATGTAA
37314103 ATTATGTAAGTTATGTAA
1 ATTATGTAAGTTATGTAA
37314121 ATTATGTAA-TT-TGT--
1 ATTATGTAAGTTATGTAA
37314135 -TTAT-T---TTATGTAA
1 ATTATGTAAGTTATGTAA
* *
37314148 ATTATGTAAGATATG-AT
1 ATTATGTAAGTTATGTAA
* *
37314165 A-TATAT-ATTTATGT--
1 ATTATGTAAGTTATGTAA
37314179 ATTATGTAAGTTATGTAA
1 ATTATGTAAGTTATGTAA
*
37314197 ATTATGTAAGATATG
1 ATTATGTAAGTTATG
37314212 ATATATATTT
Statistics
Matches: 125, Mismatches: 19, Indels: 42
0.67 0.10 0.23
Matches are distributed among these distances:
10 2 0.02
11 3 0.02
12 1 0.01
13 4 0.03
14 5 0.04
15 10 0.08
16 21 0.17
17 9 0.07
18 54 0.43
19 4 0.03
20 1 0.01
21 4 0.03
22 7 0.06
ACGTcount: A:0.36, C:0.01, G:0.15, T:0.48
Consensus pattern (18 bp):
ATTATGTAAGTTATGTAA
Found at i:37314093 original size:74 final size:74
Alignment explanation
Indices: 37313973--37314206 Score: 371
Period size: 74 Copynumber: 3.1 Consensus size: 74
37313963 ATATTTATGT
* * *
37313973 ATTATGTAAGTTATTCGA-ATTATGTAAATTATGTACGATATGATATATATCTATGTATTATGTA
1 ATTATGTAAGTTGTTC-ATATTATGTAAATTATGTAAGATATGATATATATTTATGTATTATGTA
37314037 AGTTATGTAA
65 AGTTATGTAA
*
37314047 ATTATGTAAGTTGTTCATCTTATGTAAATTATGTAAGATATGATATATATTTATGTATTATGTAA
1 ATTATGTAAGTTGTTCATATTATGTAAATTATGTAAGATATGATATATATTTATGTATTATGTAA
37314112 GTTATGTAA
66 GTTATGTAA
* * *
37314121 ATTATGTAATTTGTTTATTTTATGTAAATTATGTAAGATATGATATATATATTTATGTATTATGT
1 ATTATGTAAGTTGTTCATATTATGTAAATTATGTAAGATATG--ATATATATTTATGTATTATGT
37314186 AAGTTATGTAA
64 AAGTTATGTAA
37314197 ATTATGTAAG
1 ATTATGTAAG
37314207 ATATGATATA
Statistics
Matches: 149, Mismatches: 8, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
73 1 0.01
74 107 0.72
76 41 0.28
ACGTcount: A:0.36, C:0.02, G:0.15, T:0.47
Consensus pattern (74 bp):
ATTATGTAAGTTGTTCATATTATGTAAATTATGTAAGATATGATATATATTTATGTATTATGTAA
GTTATGTAA
Found at i:37314600 original size:106 final size:104
Alignment explanation
Indices: 37314479--37315778 Score: 2059
Period size: 106 Copynumber: 12.4 Consensus size: 104
37314469 CAATATTTAA
*
37314479 AAATACAATTTAATTTAATTAGATAATTTAAAAATTAAAATAAAAGTAAACAAAATATTTTTAGT
1 AAATACAATTTAATTTAATTAGATAATTTAAAAATTAAAATAAAAGTAGAC--AATATTTTTAGT
*
37314544 GATTAAATTAAAATCAAATAAAATATTTAAAATAAAACTTT
64 GATTAAATTAAAATAAAATAAAATATTTAAAATAAAACTTT
*
37314585 AAATACAATTTAATTTAATTAGGTAATTTAAAAA-TAAAATAAAAGTAGACAATATTTTTCA-TG
1 AAATACAATTTAATTTAATTAGATAATTTAAAAATTAAAATAAAAGTAGACAATATTTTT-AGTG
37314648 ATTAAAATAAAATAAAATAAAATAAAATATTTAAAATAAAACTTT
65 ATT-AAAT----TAAAATAAAATAAAATATTTAAAATAAAACTTT
37314693 AAATACAATTTAATTTAATTAGATAATTTAAAAATTAAAATAAAAGTAGACAAAATATTTTTAGT
1 AAATACAATTTAATTTAATTAGATAATTTAAAAATTAAAATAAAAGTAGAC--AATATTTTTAGT
*
37314758 GATTAAATTAAAATAAAATAAAATATTCAAAATAAAACTTT
64 GATTAAATTAAAATAAAATAAAATATTTAAAATAAAACTTT
* *
37314799 AAATACAATTTAATTTAATTAGGTAATTTAAAAATAAAAATAAAAGTAGACAATATTTTTCA-TG
1 AAATACAATTTAATTTAATTAGATAATTTAAAAATTAAAATAAAAGTAGACAATATTTTT-AGTG
*
37314863 ATTAAAATAAAATAAAATAAAATATTTAAAATAAAACTTT
65 ATTAAATTAAAATAAAATAAAATATTTAAAATAAAACTTT
37314903 AAATACAATTTAATTTAATTAGATAATTTAAAAATTAAAATAAAAGTAGACAAAATATTTTTAGT
1 AAATACAATTTAATTTAATTAGATAATTTAAAAATTAAAATAAAAGTAGAC--AATATTTTTAGT
* *
37314968 GATTAAATTAATATCAAATAAAATATTTAAAATAAAACTTT
64 GATTAAATTAAAATAAAATAAAATATTTAAAATAAAACTTT
* * *
37315009 AAATACAATTTAATTTAATTAGGTAATTTAAAAATAAAAATAAAAGTAGACAATATTTTTCGTGA
1 AAATACAATTTAATTTAATTAGATAATTTAAAAATTAAAATAAAAGTAGACAATATTTTTAGTGA
* *
37315074 TTAAAATAAAATGAAATAAAATATTTAAAATAAAACTTT
66 TTAAATTAAAATAAAATAAAATATTTAAAATAAAACTTT
*
37315113 AAATACAATTTAATTTAATTTGATAATTTAAAAATTAAAATAAAAGTAGACAAAATATTTTTAGT
1 AAATACAATTTAATTTAATTAGATAATTTAAAAATTAAAATAAAAGTAGAC--AATATTTTTAGT
*
37315178 GATTAAATTAAAATCAAATAAAATATTTAAAATAAAACTTT
64 GATTAAATTAAAATAAAATAAAATATTTAAAATAAAACTTT
37315219 AAATACAATTTAATTTAATTAGATAATTTAAAAA-TAAAATAAAAGTAGACAATATTTTTCA-TG
1 AAATACAATTTAATTTAATTAGATAATTTAAAAATTAAAATAAAAGTAGACAATATTTTT-AGTG
*
37315282 ATTAAAATAAAATAAAATAAAATATTTAAAATAAAACTTT
65 ATTAAATTAAAATAAAATAAAATATTTAAAATAAAACTTT
* *
37315322 AAATACAATTTAATTTTATTAGATAATATAAAAATTAAAATAAAAGTAGACAAAATATTTTTAGT
1 AAATACAATTTAATTTAATTAGATAATTTAAAAATTAAAATAAAAGTAGAC--AATATTTTTAGT
* *
37315387 GATTAAATTAAAATCAAATAAAATATTCAAAATAAAACTTT
64 GATTAAATTAAAATAAAATAAAATATTTAAAATAAAACTTT
*
37315428 AAATACAATTTAATTTAATTAGGTAATTTAAAAA-TAAAATAAAAGTAGACAATATTTTT--TG-
1 AAATACAATTTAATTTAATTAGATAATTTAAAAATTAAAATAAAAGTAGACAATATTTTTAGTGA
*
37315489 -T-GATTAAAATAAAA-AAAATATTTAAAATAAAACTTT
66 TTAAATTAAAATAAAATAAAATATTTAAAATAAAACTTT
37315525 AAATACAATTTAATTTAATTAGATAATTTAAAAATTAAAATAAAAGTAGACAAAATATTTTTAGT
1 AAATACAATTTAATTTAATTAGATAATTTAAAAATTAAAATAAAAGTAGAC--AATATTTTTAGT
*
37315590 GATTAAATTAAAATCAAATAAAATATTTAAAATAAAACTTT
64 GATTAAATTAAAATAAAATAAAATATTTAAAATAAAACTTT
* * *
37315631 AAATACAATTTAATTTAATTAGGTAATTTAAAAATAAAAATAAAAGTAGACAATATTTTTCGTGA
1 AAATACAATTTAATTTAATTAGATAATTTAAAAATTAAAATAAAAGTAGACAATATTTTTAGTGA
*
37315696 TTAAAATAAAATAAAATAAAATATTTAAAATAAAACTTT
66 TTAAATTAAAATAAAATAAAATATTTAAAATAAAACTTT
* *
37315735 AAATATAATTTAATTTAATTAGGTAATTTAAAAA-TAAAATAAAA
1 AAATACAATTTAATTTAATTAGATAATTTAAAAATTAAAATAAAA
37315779 TATTTAAAAT
Statistics
Matches: 1114, Mismatches: 50, Indels: 63
0.91 0.04 0.05
Matches are distributed among these distances:
97 54 0.05
98 27 0.02
99 1 0.00
100 9 0.01
101 2 0.00
102 2 0.00
103 113 0.10
104 301 0.27
105 61 0.05
106 444 0.40
108 65 0.06
109 16 0.01
110 5 0.00
111 14 0.01
ACGTcount: A:0.56, C:0.04, G:0.05, T:0.35
Consensus pattern (104 bp):
AAATACAATTTAATTTAATTAGATAATTTAAAAATTAAAATAAAAGTAGACAATATTTTTAGTGA
TTAAATTAAAATAAAATAAAATATTTAAAATAAAACTTT
Found at i:37314688 original size:5 final size:5
Alignment explanation
Indices: 37314650--37314676 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
37314640 TTTTCATGAT
37314650 TAAAA TAAAA TAAAA TAAAA TAAAA TA
1 TAAAA TAAAA TAAAA TAAAA TAAAA TA
37314677 TTTAAAATAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (5 bp):
TAAAA
Found at i:37314695 original size:13 final size:14
Alignment explanation
Indices: 37314649--37314688 Score: 53
Period size: 14 Copynumber: 2.8 Consensus size: 14
37314639 TTTTTCATGA
*
37314649 TTAAAATAAAATAAA
1 TTAAAATAAAAT-AT
*
37314664 ATAAAATAAAATAT
1 TTAAAATAAAATAT
37314678 TTAAAATAAAA
1 TTAAAATAAAA
37314689 CTTTAAATAC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
14 11 0.50
15 11 0.50
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (14 bp):
TTAAAATAAAATAT
Found at i:37315389 original size:209 final size:210
Alignment explanation
Indices: 37314479--37315778 Score: 2341
Period size: 210 Copynumber: 6.2 Consensus size: 210
37314469 CAATATTTAA
*
37314479 AAATACAATTTAATTTAATTAGATAATTTAAAAATTAAAATAAAAGTAAACAAAATATTTTTAGT
1 AAATACAATTTAATTTAATTAGATAATTTAAAAATTAAAATAAAAGTAGACAAAATATTTTTAGT
37314544 GATTAAATTAAAATCAAATAAAATATTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGGT
66 GATTAAATTAAAATCAAATAAAATATTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGGT
37314609 AATTTAAAAAT-AAAATAAAAGTAGACAATATTTTTCATGATTAAAATAAAATAAAATAAAATAA
131 AATTTAAAAATAAAAATAAAAGTAGACAATATTTTTCATGA-T----TAAAATAAAATAAAATAA
37314673 AATATTTAAAATAAAACTTT
191 AATATTTAAAATAAAACTTT
37314693 AAATACAATTTAATTTAATTAGATAATTTAAAAATTAAAATAAAAGTAGACAAAATATTTTTAGT
1 AAATACAATTTAATTTAATTAGATAATTTAAAAATTAAAATAAAAGTAGACAAAATATTTTTAGT
* *
37314758 GATTAAATTAAAATAAAATAAAATATTCAAAATAAAACTTTAAATACAATTTAATTTAATTAGGT
66 GATTAAATTAAAATCAAATAAAATATTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGGT
37314823 AATTTAAAAATAAAAATAAAAGTAGACAATATTTTTCATGATTAAAATAAAATAAAATAAAATAT
131 AATTTAAAAATAAAAATAAAAGTAGACAATATTTTTCATGATTAAAATAAAATAAAATAAAATAT
37314888 TTAAAATAAAACTTT
196 TTAAAATAAAACTTT
37314903 AAATACAATTTAATTTAATTAGATAATTTAAAAATTAAAATAAAAGTAGACAAAATATTTTTAGT
1 AAATACAATTTAATTTAATTAGATAATTTAAAAATTAAAATAAAAGTAGACAAAATATTTTTAGT
*
37314968 GATTAAATTAATATCAAATAAAATATTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGGT
66 GATTAAATTAAAATCAAATAAAATATTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGGT
* *
37315033 AATTTAAAAATAAAAATAAAAGTAGACAATATTTTTCGTGATTAAAATAAAATGAAATAAAATAT
131 AATTTAAAAATAAAAATAAAAGTAGACAATATTTTTCATGATTAAAATAAAATAAAATAAAATAT
37315098 TTAAAATAAAACTTT
196 TTAAAATAAAACTTT
*
37315113 AAATACAATTTAATTTAATTTGATAATTTAAAAATTAAAATAAAAGTAGACAAAATATTTTTAGT
1 AAATACAATTTAATTTAATTAGATAATTTAAAAATTAAAATAAAAGTAGACAAAATATTTTTAGT
*
37315178 GATTAAATTAAAATCAAATAAAATATTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGAT
66 GATTAAATTAAAATCAAATAAAATATTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGGT
37315243 AATTTAAAAAT-AAAATAAAAGTAGACAATATTTTTCATGATTAAAATAAAATAAAATAAAATAT
131 AATTTAAAAATAAAAATAAAAGTAGACAATATTTTTCATGATTAAAATAAAATAAAATAAAATAT
37315307 TTAAAATAAAACTTT
196 TTAAAATAAAACTTT
* *
37315322 AAATACAATTTAATTTTATTAGATAATATAAAAATTAAAATAAAAGTAGACAAAATATTTTTAGT
1 AAATACAATTTAATTTAATTAGATAATTTAAAAATTAAAATAAAAGTAGACAAAATATTTTTAGT
*
37315387 GATTAAATTAAAATCAAATAAAATATTCAAAATAAAACTTTAAATACAATTTAATTTAATTAGGT
66 GATTAAATTAAAATCAAATAAAATATTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGGT
* *
37315452 AATTTAAAAAT-AAAATAAAAGTAGACAATATTTTT--TG--T-GATTAAAATAAAA-AAAATAT
131 AATTTAAAAATAAAAATAAAAGTAGACAATATTTTTCATGATTAAAATAAAATAAAATAAAATAT
37315510 TTAAAATAAAACTTT
196 TTAAAATAAAACTTT
37315525 AAATACAATTTAATTTAATTAGATAATTTAAAAATTAAAATAAAAGTAGACAAAATATTTTTAGT
1 AAATACAATTTAATTTAATTAGATAATTTAAAAATTAAAATAAAAGTAGACAAAATATTTTTAGT
37315590 GATTAAATTAAAATCAAATAAAATATTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGGT
66 GATTAAATTAAAATCAAATAAAATATTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGGT
*
37315655 AATTTAAAAATAAAAATAAAAGTAGACAATATTTTTCGTGATTAAAATAAAATAAAATAAAATAT
131 AATTTAAAAATAAAAATAAAAGTAGACAATATTTTTCATGATTAAAATAAAATAAAATAAAATAT
37315720 TTAAAATAAAACTTT
196 TTAAAATAAAACTTT
* *
37315735 AAATATAATTTAATTTAATTAGGTAATTTAAAAA-TAAAATAAAA
1 AAATACAATTTAATTTAATTAGATAATTTAAAAATTAAAATAAAA
37315779 TATTTAAAAT
Statistics
Matches: 1051, Mismatches: 27, Indels: 21
0.96 0.02 0.02
Matches are distributed among these distances:
203 160 0.15
204 35 0.03
205 1 0.00
206 2 0.00
207 2 0.00
208 1 0.00
209 247 0.24
210 435 0.41
214 139 0.13
215 29 0.03
ACGTcount: A:0.56, C:0.04, G:0.05, T:0.35
Consensus pattern (210 bp):
AAATACAATTTAATTTAATTAGATAATTTAAAAATTAAAATAAAAGTAGACAAAATATTTTTAGT
GATTAAATTAAAATCAAATAAAATATTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGGT
AATTTAAAAATAAAAATAAAAGTAGACAATATTTTTCATGATTAAAATAAAATAAAATAAAATAT
TTAAAATAAAACTTT
Found at i:37318923 original size:44 final size:44
Alignment explanation
Indices: 37318875--37318969 Score: 145
Period size: 44 Copynumber: 2.2 Consensus size: 44
37318865 GGGAACAGAT
* *
37318875 TTAGGGAAAAAAGTATGGGGAAAAGAGGGGATTTGGGGAAAATA
1 TTAGGGAAAAAACTATGGGGAAAAAAGGGGATTTGGGGAAAATA
** *
37318919 TTAGGGAAATGACTATGGGGAAAAAAGGGGATTTGGGGAAAATG
1 TTAGGGAAAAAACTATGGGGAAAAAAGGGGATTTGGGGAAAATA
37318963 TTAGGGA
1 TTAGGGA
37318970 TTTCGGGTTT
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
44 46 1.00
ACGTcount: A:0.40, C:0.01, G:0.39, T:0.20
Consensus pattern (44 bp):
TTAGGGAAAAAACTATGGGGAAAAAAGGGGATTTGGGGAAAATA
Found at i:37319861 original size:7 final size:7
Alignment explanation
Indices: 37319851--37319911 Score: 72
Period size: 7 Copynumber: 9.0 Consensus size: 7
37319841 AAATTATACT
37319851 CTAAACC
1 CTAAACC
37319858 CTAAACC
1 CTAAACC
37319865 CTAAACC
1 CTAAACC
*
37319872 ATAAA-C
1 CTAAACC
37319878 CT-AACC
1 CTAAACC
37319884 CTAAACC
1 CTAAACC
*
37319891 ATAAACC
1 CTAAACC
* *
37319898 TTAAACT
1 CTAAACC
37319905 CTAAACC
1 CTAAACC
37319912 ATATCCCCAA
Statistics
Matches: 45, Mismatches: 7, Indels: 4
0.80 0.12 0.07
Matches are distributed among these distances:
5 2 0.04
6 5 0.11
7 38 0.84
ACGTcount: A:0.46, C:0.36, G:0.00, T:0.18
Consensus pattern (7 bp):
CTAAACC
Found at i:37319885 original size:19 final size:21
Alignment explanation
Indices: 37319852--37319914 Score: 94
Period size: 21 Copynumber: 3.1 Consensus size: 21
37319842 AATTATACTC
*
37319852 TAAACCCTAAACCCTAAACCA
1 TAAACCTTAAACCCTAAACCA
37319873 TAAACC-T-AACCCTAAACCA
1 TAAACCTTAAACCCTAAACCA
*
37319892 TAAACCTTAAACTCTAAACCA
1 TAAACCTTAAACCCTAAACCA
37319913 TA
1 TA
37319915 TCCCCAAACT
Statistics
Matches: 39, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
19 18 0.46
20 2 0.05
21 19 0.49
ACGTcount: A:0.48, C:0.33, G:0.00, T:0.19
Consensus pattern (21 bp):
TAAACCTTAAACCCTAAACCA
Found at i:37319887 original size:26 final size:27
Alignment explanation
Indices: 37319848--37319908 Score: 88
Period size: 26 Copynumber: 2.3 Consensus size: 27
37319838 CCAAAATTAT
*
37319848 ACTCTAAACCCTAAACCCTAAACCATAA
1 ACTCT-AACCCTAAACCATAAACCATAA
*
37319876 AC-CTAACCCTAAACCATAAACCTTAA
1 ACTCTAACCCTAAACCATAAACCATAA
37319902 ACTCTAA
1 ACTCTAA
37319909 ACCATATCCC
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
26 22 0.73
27 6 0.20
28 2 0.07
ACGTcount: A:0.46, C:0.34, G:0.00, T:0.20
Consensus pattern (27 bp):
ACTCTAACCCTAAACCATAAACCATAA
Found at i:37319888 original size:33 final size:34
Alignment explanation
Indices: 37319851--37319936 Score: 95
Period size: 33 Copynumber: 2.6 Consensus size: 34
37319841 AAATTATACT
*
37319851 CTAAACCCTAAACCCTAAAC-CATAAACC-TAACC
1 CTAAACCATAAACCCTAAACTC-TAAACCATAACC
* *
37319884 CTAAACCATAAACCTTAAACTCTAAACCATATCC
1 CTAAACCATAAACCCTAAACTCTAAACCATAACC
* **
37319918 CCAAACTTTAAACCCTAAA
1 CTAAACCATAAACCCTAAA
37319937 ACTGTTCACA
Statistics
Matches: 44, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
33 24 0.55
34 20 0.45
ACGTcount: A:0.45, C:0.35, G:0.00, T:0.20
Consensus pattern (34 bp):
CTAAACCATAAACCCTAAACTCTAAACCATAACC
Found at i:37321850 original size:40 final size:39
Alignment explanation
Indices: 37321814--37321920 Score: 151
Period size: 39 Copynumber: 2.7 Consensus size: 39
37321804 ATATCCGGAC
*
37321814 TAAGATCCGAAGGCGTTCGTGCGAGTTAATAAATCCGGGT
1 TAAG-TCCGAAGGCATTCGTGCGAGTTAATAAATCCGGGT
* * * *
37321854 TAAGCCCGAAGGCATTTGTGCGAGTTACTAAACCCGGGT
1 TAAGTCCGAAGGCATTCGTGCGAGTTAATAAATCCGGGT
37321893 TAAGTCCCGAAGGCATTCGTGCGAGTTA
1 TAAGT-CCGAAGGCATTCGTGCGAGTTA
37321921 CTATAACCGG
Statistics
Matches: 59, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
39 34 0.58
40 25 0.42
ACGTcount: A:0.26, C:0.21, G:0.29, T:0.24
Consensus pattern (39 bp):
TAAGTCCGAAGGCATTCGTGCGAGTTAATAAATCCGGGT
Found at i:37321921 original size:40 final size:40
Alignment explanation
Indices: 37321820--37321949 Score: 183
Period size: 40 Copynumber: 3.3 Consensus size: 40
37321810 GGACTAAGAT
* * *
37321820 CCGAAGGCGTTCGTGCGAGTTAATAAATCCGGGTTAAG-C
1 CCGAAGGCATTCGTGCGAGTTACTAAACCCGGGTTAAGTC
*
37321859 CCGAAGGCATTTGTGCGAGTTACTAAACCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAACCCGGGTTAAGTC
* *
37321899 CCGAAGGCATTCGTGCGAGTTACTATAACCGGGGTT-TGTC
1 CCGAAGGCATTCGTGCGAGTTACTA-AACCCGGGTTAAGTC
37321939 CCGAAGGCATT
1 CCGAAGGCATT
37321950 TGAGCTAGTC
Statistics
Matches: 82, Mismatches: 7, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
39 34 0.41
40 39 0.48
41 9 0.11
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.25
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGTTACTAAACCCGGGTTAAGTC
Found at i:37321982 original size:79 final size:79
Alignment explanation
Indices: 37321819--37321984 Score: 176
Period size: 79 Copynumber: 2.1 Consensus size: 79
37321809 CGGACTAAGA
* * *
37321819 TCCGAAGGCGTTCGTGCGAGTTAATAAATCCGGGTTAAGCCCGAAGGCATTTGTGCGAGTTACTA
1 TCCGAAGGCATTCGTGCGAGTTAATAAATCCGGGTTAAGCCCGAAGGCATTTGAGCGAGTCACTA
*
37321884 AACCCGGGTTAAGT
66 AACCCGGGTTAAAT
* * * * *
37321898 CCCGAAGGCATTCGTGCGAGTTACTATAA-CCGGGGTT-TGTCCCGAAGGCATTTGAGCTAGTCG
1 TCCGAAGGCATTCGTGCGAGTTAATA-AATCC-GGGTTAAG-CCCGAAGGCATTTGAGCGAGTCA
* * *
37321961 TTATATCC-GGTTAAAT
63 CTAAACCCGGGTTAAAT
37321977 TCCGAAGG
1 TCCGAAGG
37321985 TACGTGATTC
Statistics
Matches: 71, Mismatches: 13, Indels: 6
0.79 0.14 0.07
Matches are distributed among these distances:
79 40 0.56
80 31 0.44
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (79 bp):
TCCGAAGGCATTCGTGCGAGTTAATAAATCCGGGTTAAGCCCGAAGGCATTTGAGCGAGTCACTA
AACCCGGGTTAAAT
Done.