Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr03 135709677
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 135709677
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 127 of 438
Found at i:37604704 original size:40 final size:40
Alignment explanation
Indices: 37604659--37604825 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
37604649 CGGAATATAA
37604659 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * *
37604699 CCGGATAGAAT-ATCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCA-CTAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
37604739 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * * *
37604779 CCGGATATAATTTCCAGCATAATTGTCTTCGGAT-TTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
37604818 CCGGATAT
1 CCGGATAT
37604826 CATTCAATTT
Statistics
Matches: 104, Mismatches: 20, Indels: 7
0.79 0.15 0.05
Matches are distributed among these distances:
39 14 0.13
40 89 0.86
41 1 0.01
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:37604809 original size:80 final size:79
Alignment explanation
Indices: 37604675--37604823 Score: 194
Period size: 80 Copynumber: 1.9 Consensus size: 79
37604665 ATAATCACGT
* *
37604675 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATATCTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATATCTCGCACGAATGCCTTCGGAT-TTAGCC
37604740 CGGATGTAGCCACTA
65 CGGATGTAGCCACTA
* * * * *
37604755 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGATTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATATCTC-GCACGAA-TGCCTTCGGATTTAGC
37604818 CCGGAT
64 CCGGAT
37604824 ATCATTCAAT
Statistics
Matches: 60, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
79 14 0.23
80 46 0.77
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.28
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATATCTCGCACGAATGCCTTCGGATTTAGCCC
GGATGTAGCCACTA
Found at i:37611297 original size:40 final size:40
Alignment explanation
Indices: 37611253--37611480 Score: 361
Period size: 40 Copynumber: 5.7 Consensus size: 40
37611243 GCTACTTGCT
* *
37611253 CAAATGCCTTTGGGACTTAGCCTGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
37611293 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* *
37611333 CAAATGCCTTCGGGACTTAGCCCGATTATAGTAAATCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
37611373 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * *
37611413 CAAATGCCTTCGGG-CTTAGCCCGG-AATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
37611452 CAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
37611481 CATCCGAATA
Statistics
Matches: 174, Mismatches: 11, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
38 1 0.01
39 34 0.20
40 138 0.79
41 1 0.01
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:37634247 original size:15 final size:15
Alignment explanation
Indices: 37634229--37634262 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
37634219 AAAATCAAAG
*
37634229 AAAAGAAAATAACTA
1 AAAAGAAAAAAACTA
*
37634244 AAAAGAAAAAAATTA
1 AAAAGAAAAAAACTA
37634259 AAAA
1 AAAA
37634263 TTTTCCTAGG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.79, C:0.03, G:0.06, T:0.12
Consensus pattern (15 bp):
AAAAGAAAAAAACTA
Found at i:37637893 original size:50 final size:49
Alignment explanation
Indices: 37637787--37637959 Score: 202
Period size: 50 Copynumber: 3.5 Consensus size: 49
37637777 GTACGCATAA
* * * *
37637787 TAGCCTGCACATAGTACTACACATGCGACCAATTATCTGGTACACGTAG
1 TAGCCTGCACTTAGTACTACACACGTGACCAATTATCTGATACACGTAG
* **
37637836 TAGCCTGCACTTAGTACTACACACATGACCTAACCATCTGATACACGTAG
1 TAGCCTGCACTTAGTACTACACACGTGACC-AATTATCTGATACACGTAG
* * ***
37637886 TAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCGGATACGTATAG
1 TAGCCTGCACTTAGTACTACACACGTGA-CCAA-TTATCTGATACACGTAG
*
37637937 GAGCCTGCACTTAGTACTACACA
1 TAGCCTGCACTTAGTACTACACA
37637960 TGCGACCACA
Statistics
Matches: 105, Mismatches: 16, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
49 26 0.25
50 45 0.43
51 34 0.32
ACGTcount: A:0.31, C:0.27, G:0.18, T:0.25
Consensus pattern (49 bp):
TAGCCTGCACTTAGTACTACACACGTGACCAATTATCTGATACACGTAG
Found at i:37648483 original size:29 final size:29
Alignment explanation
Indices: 37648442--37648560 Score: 163
Period size: 29 Copynumber: 4.2 Consensus size: 29
37648432 GTGAGCATGA
37648442 ATAT-AATGTGATTTGGGCCTATTGGGCC
1 ATATAAATGTGATTTGGGCCTATTGGGCC
*
37648470 ATATAAATGTGATTTGGGCCT-TATGGGCT
1 ATATAAATGTGATTTGGGCCTAT-TGGGCC
* *
37648499 ATATAAATGTGATTTGGGCATAATGGGCC
1 ATATAAATGTGATTTGGGCCTATTGGGCC
**
37648528 ATACGAATGTGA-TTGGGCCTATTGGGCC
1 ATATAAATGTGATTTGGGCCTATTGGGCC
37648556 ATATA
1 ATATA
37648561 CAGGTATGTG
Statistics
Matches: 78, Mismatches: 10, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
28 22 0.28
29 56 0.72
ACGTcount: A:0.26, C:0.13, G:0.28, T:0.34
Consensus pattern (29 bp):
ATATAAATGTGATTTGGGCCTATTGGGCC
Found at i:37650149 original size:33 final size:33
Alignment explanation
Indices: 37650057--37650149 Score: 84
Period size: 33 Copynumber: 2.8 Consensus size: 33
37650047 GTTCAGTTAA
* *
37650057 GGCCTTAGCCCATTTCAGAATCAGA-AACAGTGTG
1 GGCCTAAGCCCA-TTCAGAATCA-ATAACAATGTG
* *
37650091 GGCCTGAGCCCATTCTAGTAA-CAATATCAATG-G
1 GGCCTAAGCCCATTC-AG-AATCAATAACAATGTG
37650124 GGCCTAAGCCCATTACAGAATCAATA
1 GGCCTAAGCCCATT-CAGAATCAATA
37650150 CCGTATGCAA
Statistics
Matches: 50, Mismatches: 4, Indels: 11
0.77 0.06 0.17
Matches are distributed among these distances:
32 2 0.04
33 25 0.50
34 21 0.42
35 2 0.04
ACGTcount: A:0.32, C:0.25, G:0.20, T:0.23
Consensus pattern (33 bp):
GGCCTAAGCCCATTCAGAATCAATAACAATGTG
Found at i:37652657 original size:71 final size:71
Alignment explanation
Indices: 37652571--37652734 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
37652561 CGATTTGTCT
37652571 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
37652636 CTTTCA
66 CTTTCA
37652642 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
37652707 CTTTCA
66 CTTTCA
37652713 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
37652735 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:37652772 original size:71 final size:70
Alignment explanation
Indices: 37652571--37652768 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
37652561 CGATTTGTCT
* * * *
37652571 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
37652636 CTTTCA
65 CTTTCA
* * * *
37652642 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
37652707 CTTTCA
65 CTTTCA
* *
37652713 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
37652769 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:37657352 original size:29 final size:29
Alignment explanation
Indices: 37657261--37657392 Score: 131
Period size: 29 Copynumber: 4.6 Consensus size: 29
37657251 TACTCGATTT
** * *
37657261 CGCACACTTAGTGCCATGCGATTT-AAGCC
1 CGCACACTTAGTGCCAT-ATATTTCCAGCA
* **** * *
37657290 CGCACACATAGTGCCATGCCCTTCGAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
37657319 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
* *
37657348 TGCACACTTAGTGCCATATTTTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
37657377 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
37657393 ATCTCGTCAC
Statistics
Matches: 85, Mismatches: 17, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
28 2 0.02
29 83 0.98
ACGTcount: A:0.24, C:0.33, G:0.17, T:0.26
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:37665085 original size:29 final size:29
Alignment explanation
Indices: 37664994--37665125 Score: 131
Period size: 29 Copynumber: 4.6 Consensus size: 29
37664984 TACTCGATTT
** * *
37664994 CGCACACTTAGTGCCATGCGATTT-AAGCC
1 CGCACACTTAGTGCCAT-ATATTTCCAGCA
* **** * *
37665023 CGCACACATAGTGCCATGCCCTTCGAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
37665052 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
* *
37665081 TGCACACTTAGTGCCATATTTTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
37665110 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
37665126 ATCTCGTCAC
Statistics
Matches: 85, Mismatches: 17, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
28 2 0.02
29 83 0.98
ACGTcount: A:0.24, C:0.33, G:0.17, T:0.26
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:37666883 original size:40 final size:40
Alignment explanation
Indices: 37666824--37667030 Score: 177
Period size: 40 Copynumber: 5.2 Consensus size: 40
37666814 CGGAATACAA
* * *
37666824 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATAGAACAACTTGCACGAATGCCTTCGGGTCTTAGC
* * * *
37666864 CTGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATAGAACAACTTGCACGAATGCCTTCGGGTCTTAGC
**
37666904 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATAGAACAACTTGCACGAATGCCTTCGGGTCTTAGC
* * * *
37666944 CCGGATTTAG-TC-ACTAGCA-TAATTGCCTTCGGGTCTTAAC
1 CCGGA--TAGAACAACTTGCACGAA-TGCCTTCGGGTCTTAGC
** * * ** * *
37666984 CCGGATTTAACTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATAGAACAACTTGCACGAATGCCTTCGGGTCTTAGC
37667024 CCGGATA
1 CCGGATA
37667031 TCATTTAATT
Statistics
Matches: 135, Mismatches: 26, Indels: 12
0.78 0.15 0.07
Matches are distributed among these distances:
38 1 0.01
39 3 0.02
40 127 0.94
41 3 0.02
42 1 0.01
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.27
Consensus pattern (40 bp):
CCGGATAGAACAACTTGCACGAATGCCTTCGGGTCTTAGC
Found at i:37666971 original size:80 final size:81
Alignment explanation
Indices: 37666824--37667029 Score: 238
Period size: 80 Copynumber: 2.6 Consensus size: 81
37666814 CGGAATACAA
* * * * *
37666824 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCTGGA-TAGAACGACTTGCACAAAT
1 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
*
37666888 GCCTTCGGGTATTAGC
66 GCCTTCGGGTATTAAC
* * *
37666904 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTTAG-TC-ACTAGCATAAT
1 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGA-TTAGAACGACTAGCACAAA
*
37666967 TGCCTTCGGGTCTTAAC
65 TGCCTTCGGGTATTAAC
* * ** * *
37666984 CCGGATTTAACTACTAGCATAAATGTCTTCGGGACTTAGCCCGGAT
1 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT
37667030 ATCATTTAAT
Statistics
Matches: 108, Mismatches: 16, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
79 1 0.01
80 103 0.95
81 1 0.01
82 3 0.03
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.27
Consensus pattern (81 bp):
CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
GCCTTCGGGTATTAAC
Found at i:37669498 original size:6 final size:6
Alignment explanation
Indices: 37669483--37669587 Score: 78
Period size: 6 Copynumber: 17.8 Consensus size: 6
37669473 AACCAAAATG
* *
37669483 AGAATC AGAATT AGAATC AGTAA-C AGAATC AGAATC AG-ATC A-ATATA
1 AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGA-ATC
* * * *
37669530 ACAA-C AGAATT AGAATC AGAATC AGAATTAC TG-A-C AGAATC AGAGTC
1 AGAATC AGAATC AGAATC AGAATC AGAA-T-C AGAATC AGAATC AGAATC
37669577 AGAATC AGAAT
1 AGAATC AGAAT
37669588 GTGAATGCAA
Statistics
Matches: 78, Mismatches: 11, Indels: 20
0.72 0.10 0.18
Matches are distributed among these distances:
4 2 0.03
5 10 0.13
6 59 0.76
7 5 0.06
8 2 0.03
ACGTcount: A:0.50, C:0.14, G:0.16, T:0.20
Consensus pattern (6 bp):
AGAATC
Found at i:37669749 original size:26 final size:26
Alignment explanation
Indices: 37669719--37669786 Score: 93
Period size: 27 Copynumber: 2.6 Consensus size: 26
37669709 ACAATATCGA
*
37669719 CAGAGTCACCAGATACAGATA-TGTGG
1 CAGAGCCACCAGA-ACAGATATTGTGG
37669745 CAGAGCCACCAGAACAGATATTTGTGG
1 CAGAGCCACCAGAACAGATA-TTGTGG
*
37669772 CATAGCCACCAGAAC
1 CAGAGCCACCAGAAC
37669787 GCTTCCTCCG
Statistics
Matches: 38, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
25 7 0.18
26 12 0.32
27 19 0.50
ACGTcount: A:0.35, C:0.25, G:0.24, T:0.16
Consensus pattern (26 bp):
CAGAGCCACCAGAACAGATATTGTGG
Found at i:37670045 original size:26 final size:26
Alignment explanation
Indices: 37669984--37670170 Score: 216
Period size: 26 Copynumber: 7.2 Consensus size: 26
37669974 GGGGCAAAAT
* * * *
37669984 GTAATTTTACCCCACAAGGTATCTC-
1 GTAATTCTACCCTACAGGGTATTTCG
37670009 GTAATTCTACCCTACAGGGTATTTCG
1 GTAATTCTACCCTACAGGGTATTTCG
*
37670035 GTATTTCTACCCTACAAGGGTATTTCG
1 GTAATTCTACCCTAC-AGGGTATTTCG
* * *
37670062 ATAATTCTACCCTACAAGGTATTTTG
1 GTAATTCTACCCTACAGGGTATTTCG
* * * *
37670088 GTAATTCTATCCTATAAGGTATTTCA
1 GTAATTCTACCCTACAGGGTATTTCG
*
37670114 GTAATTCTACCCTATAGGGTATTTC-
1 GTAATTCTACCCTACAGGGTATTTCG
* *
37670139 GAAATTCTACCCTACAGGGTATTTCA
1 GTAATTCTACCCTACAGGGTATTTCG
37670165 GTAATT
1 GTAATT
37670171 TCACAATCAA
Statistics
Matches: 140, Mismatches: 19, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
25 44 0.31
26 72 0.51
27 24 0.17
ACGTcount: A:0.27, C:0.21, G:0.15, T:0.37
Consensus pattern (26 bp):
GTAATTCTACCCTACAGGGTATTTCG
Found at i:37670280 original size:26 final size:25
Alignment explanation
Indices: 37670251--37670376 Score: 87
Period size: 25 Copynumber: 4.9 Consensus size: 25
37670241 GTAGTTCTGT
37670251 AAATCAAGGGTAAATAGTAATTTTAC
1 AAATCAA-GGTAAATAGTAATTTTAC
*
37670277 AAATCGAGGTAAA-ACGTAATTTGTA-
1 AAATCAAGGTAAATA-GTAATTT-TAC
* * * * * **
37670302 AACT-GATGTAAACCAGTAATTCTGT
1 AAATCAAGGTAAA-TAGTAATTTTAC
37670327 AAATCAAGGGTAAAATAGTAATTTTAC
1 AAATCAA-GGT-AAATAGTAATTTTAC
*
37670354 AAATCAAGGTAAAAAGATAATTT
1 AAATCAAGGTAAATAG-TAATTT
37670377 GTAAACTGAG
Statistics
Matches: 78, Mismatches: 13, Indels: 18
0.72 0.12 0.17
Matches are distributed among these distances:
24 9 0.12
25 30 0.38
26 19 0.24
27 17 0.22
28 3 0.04
ACGTcount: A:0.46, C:0.09, G:0.16, T:0.29
Consensus pattern (25 bp):
AAATCAAGGTAAATAGTAATTTTAC
Found at i:37670347 original size:27 final size:27
Alignment explanation
Indices: 37670181--37670628 Score: 411
Period size: 27 Copynumber: 17.2 Consensus size: 27
37670171 TCACAATCAA
37670181 GGTAAAACGGTAATT-TGTAAATCGA-
1 GGTAAAACGGTAATTCTGTAAATCGAG
*
37670206 GGTAAAACGATAATT-TGTAAA-CTGAG
1 GGTAAAACGGTAATTCTGTAAATC-GAG
* * * *
37670232 GGTAAACCAGTAGTTCTGTAAATCAAG
1 GGTAAAACGGTAATTCTGTAAATCGAG
* **
37670259 GGTAAATA--GTAATTTTACAAATCGA-
1 GGTAAA-ACGGTAATTCTGTAAATCGAG
37670284 GGTAAAAC-GTAATT-TGTAAA-CTGA-
1 GGTAAAACGGTAATTCTGTAAATC-GAG
* * * *
37670308 TGTAAACCAGTAATTCTGTAAATCAAG
1 GGTAAAACGGTAATTCTGTAAATCGAG
** * ** *
37670335 GGTAAAATAGTAATTTTACAAATC-AA
1 GGTAAAACGGTAATTCTGTAAATCGAG
* *
37670361 GGTAAAAAGATAATT-TGTAAA-CTGA-
1 GGTAAAACGGTAATTCTGTAAATC-GAG
37670386 GGTAAAACGGTAATTCTGTAAATCGAG
1 GGTAAAACGGTAATTCTGTAAATCGAG
37670413 GGT-AAAC-GTAATTCTGTAAA-CTGAG
1 GGTAAAACGGTAATTCTGTAAATC-GAG
37670438 GGTAAAACGGTAATTCTGTAAATCGA-
1 GGTAAAACGGTAATTCTGTAAATCGAG
*
37670464 GGTAAAATGGTAATTCTGTAAA-CTGAG
1 GGTAAAACGGTAATTCTGTAAATC-GAG
*
37670491 GGTAAAACGGTAATTATGTAAATCGAG
1 GGTAAAACGGTAATTCTGTAAATCGAG
* ** *
37670518 GGTAAAACGGTAATTTTACAAATC-AA
1 GGTAAAACGGTAATTCTGTAAATCGAG
*
37670544 GGTAAAACGGTAATTCTATAAATCGAG
1 GGTAAAACGGTAATTCTGTAAATCGAG
* **
37670571 GGTAAAACGGTAATTTTACAAATCGAG
1 GGTAAAACGGTAATTCTGTAAATCGAG
37670598 GGTAAAACGGTAATT-T-TAAATCGAG
1 GGTAAAACGGTAATTCTGTAAATCGAG
37670623 GGTAAA
1 GGTAAA
37670629 CAGTAATGGT
Statistics
Matches: 355, Mismatches: 44, Indels: 48
0.79 0.10 0.11
Matches are distributed among these distances:
23 1 0.00
24 16 0.05
25 91 0.26
26 107 0.30
27 137 0.39
28 3 0.01
ACGTcount: A:0.41, C:0.10, G:0.21, T:0.28
Consensus pattern (27 bp):
GGTAAAACGGTAATTCTGTAAATCGAG
Found at i:37670500 original size:53 final size:53
Alignment explanation
Indices: 37670181--37670628 Score: 432
Period size: 53 Copynumber: 8.6 Consensus size: 53
37670171 TCACAATCAA
*
37670181 GGTAAAACGGTAATT-TGTAAATCGA-GGTAAAACGATAATTTGTAAACTGAG
1 GGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTTGTAAACTGAG
* * * * *
37670232 GGTAAACCAGTAGTTCTGTAAATCAAGGGTAAATA--GTAATTT-TACAAATCGA-
1 GGTAAAACGGTAATTCTGTAAATCGAGGGTAAA-ACGGTAATTTGTA-AACT-GAG
* * * *
37670284 GGTAAAAC-GTAATT-TGTAAA-CTGA-TGTAAACCAGTAATTCTGTAAA-TCAAG
1 GGTAAAACGGTAATTCTGTAAATC-GAGGGTAAAACGGTAATT-TGTAAACT-GAG
** * ** * * *
37670335 GGTAAAATAGTAATTTTACAAATC-AAGGTAAAAAGATAATTTGTAAACTGA-
1 GGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTTGTAAACTGAG
37670386 GGTAAAACGGTAATTCTGTAAATCGAGGGT-AAAC-GTAATTCTGTAAACTGAG
1 GGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATT-TGTAAACTGAG
*
37670438 GGTAAAACGGTAATTCTGTAAATCGA-GGTAAAATGGTAATTCTGTAAACTGAG
1 GGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATT-TGTAAACTGAG
* * * *
37670491 GGTAAAACGGTAATTATGTAAATCGAGGGTAAAACGGTAATTT-TACAAATCAA
1 GGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTTGTA-AACTGAG
* *
37670544 GGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGGTAATTT-TACAAATCGAG
1 GGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTTGTA-AACT-GAG
37670598 GGTAAAACGGTAATT-T-TAAATCGAGGGTAAA
1 GGTAAAACGGTAATTCTGTAAATCGAGGGTAAA
37670629 CAGTAATGGT
Statistics
Matches: 334, Mismatches: 39, Indels: 47
0.80 0.09 0.11
Matches are distributed among these distances:
49 6 0.02
50 21 0.06
51 64 0.19
52 91 0.27
53 120 0.36
54 32 0.10
ACGTcount: A:0.41, C:0.10, G:0.21, T:0.28
Consensus pattern (53 bp):
GGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTTGTAAACTGAG
Found at i:37672598 original size:6 final size:6
Alignment explanation
Indices: 37672587--37672688 Score: 102
Period size: 6 Copynumber: 16.8 Consensus size: 6
37672577 AACCAAAATG
* *
37672587 AGAATC AGAATC AGAATC AGTAA-C AGAATC AGAATC AGAATC AAAATT
1 AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGAATC
* * *
37672635 AGTAA-C AGAATC AGAATT AGAATC AGAATT ACGTGA-C AGAATC AGAATC
1 AG-AATC AGAATC AGAATC AGAATC AGAATC A-G-AATC AGAATC AGAATC
37672684 AGAAT
1 AGAAT
37672689 GTGAATACAA
Statistics
Matches: 79, Mismatches: 10, Indels: 14
0.77 0.10 0.14
Matches are distributed among these distances:
5 5 0.06
6 67 0.85
7 6 0.08
8 1 0.01
ACGTcount: A:0.50, C:0.14, G:0.17, T:0.20
Consensus pattern (6 bp):
AGAATC
Found at i:37672602 original size:30 final size:29
Alignment explanation
Indices: 37672566--37672688 Score: 138
Period size: 30 Copynumber: 4.1 Consensus size: 29
37672556 AAGAAACATT
* * *
37672566 ATCAGAATTGGAACCAAAATGAGAATCAGA
1 ATCAGAATTGTAA-CAGAATCAGAATCAGA
*
37672596 ATCAGAATCAGTAACAGAATCAGAATCAGA
1 ATCAGAAT-TGTAACAGAATCAGAATCAGA
* *
37672626 ATCAAAATTAGTAACAGAATCAGAATTAGA
1 ATCAGAATT-GTAACAGAATCAGAATCAGA
*
37672656 ATCAGAATTACGTGACAGAATCAGAATCAGA
1 ATCAGAATT--GTAACAGAATCAGAATCAGA
37672687 AT
1 AT
37672689 GTGAATACAA
Statistics
Matches: 79, Mismatches: 11, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
30 56 0.71
31 23 0.29
ACGTcount: A:0.50, C:0.14, G:0.17, T:0.20
Consensus pattern (29 bp):
ATCAGAATTGTAACAGAATCAGAATCAGA
Found at i:37672860 original size:27 final size:26
Alignment explanation
Indices: 37672810--37672892 Score: 103
Period size: 27 Copynumber: 3.1 Consensus size: 26
37672800 TGGCTGCCAA
* * *
37672810 AACAGATATCGTGACAAAGTCACCAG
1 AACAGATATTGTGGCAAAGCCACCAG
*
37672836 ATACAGATATTGTGGCAGAGCCACCAG
1 A-ACAGATATTGTGGCAAAGCCACCAG
*
37672863 AACAGATATTTGTGGCATAGCCACCAG
1 AACAGATA-TTGTGGCAAAGCCACCAG
37672890 AAC
1 AAC
37672893 GCTTCCTCCG
Statistics
Matches: 50, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
26 8 0.16
27 42 0.84
ACGTcount: A:0.37, C:0.23, G:0.22, T:0.18
Consensus pattern (26 bp):
AACAGATATTGTGGCAAAGCCACCAG
Found at i:37673133 original size:27 final size:27
Alignment explanation
Indices: 37673104--37673305 Score: 235
Period size: 27 Copynumber: 7.5 Consensus size: 27
37673094 AATTTTACTC
* *
37673104 ACAAGGGTATCTCGATAATTCTACCCC
1 ACAAGGGTATTTCGATAATTCTACCCT
* * *
37673131 ACAGGGGTATTTCGGTATTTCTACCCT
1 ACAAGGGTATTTCGATAATTCTACCCT
*
37673158 ACAGGGGTATTTCGATAATTCTACCCT
1 ACAAGGGTATTTCGATAATTCTACCCT
37673185 ACAAGGGTATTTCGATAATTCTACCCT
1 ACAAGGGTATTTCGATAATTCTACCCT
* * * *
37673212 ACAGGGGTATTTTGGTAATTCTATCCT
1 ACAAGGGTATTTCGATAATTCTACCCT
*
37673239 ATAAGGGTATTTC-AGTAATTCTACCCT
1 ACAAGGGTATTTCGA-TAATTCTACCCT
* * * * *
37673266 ATAGGGGTATTTTGAAAACTCTACCCT
1 ACAAGGGTATTTCGATAATTCTACCCT
*
37673293 ACAGGGGTATTTC
1 ACAAGGGTATTTC
37673306 AGTAATTTCA
Statistics
Matches: 150, Mismatches: 23, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
27 149 0.99
28 1 0.01
ACGTcount: A:0.26, C:0.21, G:0.19, T:0.34
Consensus pattern (27 bp):
ACAAGGGTATTTCGATAATTCTACCCT
Found at i:37673173 original size:54 final size:54
Alignment explanation
Indices: 37673108--37673312 Score: 268
Period size: 54 Copynumber: 3.8 Consensus size: 54
37673098 TTACTCACAA
* * * * *
37673108 GGGTATCTCGATAATTCTACCCCACAGGGGTATTTCGGTATTTCTACCCTACAG
1 GGGTATTTCGATAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAG
37673162 GGGTATTTCGATAATTCTACCCTACAAGGGTATTTC-GATAATTCTACCCTACAG
1 GGGTATTTCGATAATTCTACCCTACAAGGGTATTTCAG-TAATTCTACCCTACAG
* * * * *
37673216 GGGTATTTTGGTAATTCTATCCTATAAGGGTATTTCAGTAATTCTACCCTATAG
1 GGGTATTTCGATAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAG
* * * *
37673270 GGGTATTTTGAAAACTCTACCCTACAGGGGTATTTCAGTAATT
1 GGGTATTTCGATAATTCTACCCTACAAGGGTATTTCAGTAATT
37673313 TCACAATCAA
Statistics
Matches: 134, Mismatches: 15, Indels: 4
0.88 0.10 0.03
Matches are distributed among these distances:
53 1 0.01
54 132 0.99
55 1 0.01
ACGTcount: A:0.26, C:0.20, G:0.19, T:0.35
Consensus pattern (54 bp):
GGGTATTTCGATAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAG
Found at i:37673201 original size:81 final size:81
Alignment explanation
Indices: 37673104--37673314 Score: 280
Period size: 81 Copynumber: 2.6 Consensus size: 81
37673094 AATTTTACTC
* * *
37673104 ACAAGGGTATCTCGATAATTCTACCCCACAGGGGTATTTCGGTATTTCTACCCTACAGGGGTATT
1 ACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTACAAGGGTATT
37673169 TC-GATAATTCTACCCT
66 TCAG-TAATTCTACCCT
* * * *
37673185 ACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTTGGTAATTCTATCCTATAAGGGTATT
1 ACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTACAAGGGTATT
37673250 TCAGTAATTCTACCCT
66 TCAGTAATTCTACCCT
* * * * * *
37673266 ATAGGGGTATTTTGAAAACTCTACCCTACAGGGGTATTTCAGTAATTTC
1 ACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCGGT-ATTTC
37673315 ACAATCAAGG
Statistics
Matches: 113, Mismatches: 15, Indels: 3
0.86 0.11 0.02
Matches are distributed among these distances:
81 108 0.96
82 5 0.04
ACGTcount: A:0.27, C:0.20, G:0.18, T:0.35
Consensus pattern (81 bp):
ACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTACAAGGGTATT
TCAGTAATTCTACCCT
Found at i:37673446 original size:81 final size:79
Alignment explanation
Indices: 37673317--37673842 Score: 609
Period size: 81 Copynumber: 6.5 Consensus size: 79
37673307 GTAATTTCAC
*
37673317 AATCAAGGGTAAAACGGTAATTTGTAAATCGAGGGTAAAACGATAATTTTGTAAACTGAGGGTAA
1 AATCAAGGGTAAAACAGTAATTT-TAAATCGAGGGTAAAACGATAATTTTGTAAACTGAGGGTAA
*
37673382 ACCAGTAATTTTGTA
65 ACCAGTAATTCTGTA
* *
37673397 AATCAATGGTAAAATAGTAATTTTACAATCCGAGGGTAAAACGATAATTTTGTAAACTGAGGGTA
1 AATCAAGGGTAAAACAGTAATTTTA-AAT-CGAGGGTAAAACGATAATTTTGTAAACTGAGGGTA
37673462 AACCAGTAATTCTGTA
64 AACCAGTAATTCTGTA
37673478 AATCAAGGGTAAAACAGTAATTTTACAAATCGAGGGTAAAACGATAATTTTGTAAACTGAGGGTA
1 AATCAAGGGTAAAACAGTAATTTT--AAATCGAGGGTAAAACGATAATTTTGTAAACTGAGGGTA
*
37673543 AACCAATAATTCTGTA
64 AACCAGTAATTCTGTA
* *
37673559 AATCAAGGGTAAAACAGTAATTCTATAAA-CTGAGGGTAAAACGGTAATTCTGTAAA-TCGAGGG
1 AATCAAGGGTAAAACAGTAATT-T-TAAATC-GAGGGTAAAACGATAATTTTGTAAACT-GAGGG
*
37673622 TAAAAC-GATAATTCTGTA
62 TAAACCAG-TAATTCTGTA
* *
37673640 AA-CTGAGGGTAAAAC-GATAATTCTGTAAATCGAGGG-AAAACGGTAATTTTGTAAACTGAGGG
1 AATC-AAGGGTAAAACAG-TAATT-T-TAAATCGAGGGTAAAACGATAATTTTGTAAACTGAGGG
*
37673702 TAAAACTA-TAATTCTGTA
62 T-AAACCAGTAATTCTGTA
* * * * *
37673720 AATCGAGGGTAAAACGGTAATTTTACAAATCGAGGGTAAAACGGTAATTCTATAAA-TCGAGGGT
1 AATCAAGGGTAAAACAGTAATTTT--AAATCGAGGGTAAAACGATAATTTTGTAAACT-GAGGGT
* * * **
37673784 AAAACGGTAATTTTACA
63 AAACCAGTAATTCTGTA
* *
37673801 AATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAAC
1 AATCAAGGGTAAAACAGTAATT-T-TAAATCGAGGGTAAAAC
37673843 AGTAATTGGT
Statistics
Matches: 398, Mismatches: 24, Indels: 47
0.85 0.05 0.10
Matches are distributed among these distances:
78 1 0.00
79 3 0.01
80 93 0.23
81 292 0.73
82 6 0.02
83 3 0.01
ACGTcount: A:0.41, C:0.11, G:0.21, T:0.27
Consensus pattern (79 bp):
AATCAAGGGTAAAACAGTAATTTTAAATCGAGGGTAAAACGATAATTTTGTAAACTGAGGGTAAA
CCAGTAATTCTGTA
Found at i:37673847 original size:27 final size:27
Alignment explanation
Indices: 37673317--37673849 Score: 522
Period size: 27 Copynumber: 19.8 Consensus size: 27
37673307 GTAATTTCAC
* *
37673317 AATCAAGGGTAAAACGGTAATT-TGTA
1 AATCGAGGGTAAAACAGTAATTCTGTA
*
37673343 AATCGAGGGTAAAAC-GATAATTTTGTA
1 AATCGAGGGTAAAACAG-TAATTCTGTA
* *
37673370 AA-CTGAGGGTAAACCAGTAATTTTGTA
1 AATC-GAGGGTAAAACAGTAATTCTGTA
* * *
37673397 AATCAATGGTAAAATAGTAATT-T-TA
1 AATCGAGGGTAAAACAGTAATTCTGTA
*
37673422 CAATCCGAGGGTAAAAC-GATAATTTTGTA
1 -AAT-CGAGGGTAAAACAG-TAATTCTGTA
*
37673451 AA-CTGAGGGTAAACCAGTAATTCTGTA
1 AATC-GAGGGTAAAACAGTAATTCTGTA
* * **
37673478 AATCAAGGGTAAAACAGTAATTTTACA
1 AATCGAGGGTAAAACAGTAATTCTGTA
*
37673505 AATCGAGGGTAAAAC-GATAATTTTGTA
1 AATCGAGGGTAAAACAG-TAATTCTGTA
* *
37673532 AA-CTGAGGGTAAACCAATAATTCTGTA
1 AATC-GAGGGTAAAACAGTAATTCTGTA
* *
37673559 AATCAAGGGTAAAACAGTAATTCTATA
1 AATCGAGGGTAAAACAGTAATTCTGTA
*
37673586 AA-CTGAGGGTAAAACGGTAATTCTGTA
1 AATC-GAGGGTAAAACAGTAATTCTGTA
37673613 AATCGAGGGTAAAAC-GATAATTCTGTA
1 AATCGAGGGTAAAACAG-TAATTCTGTA
37673640 AA-CTGAGGGTAAAAC-GATAATTCTGTA
1 AATC-GAGGGTAAAACAG-TAATTCTGTA
* *
37673667 AATCGAGGG-AAAACGGTAATTTTGTA
1 AATCGAGGGTAAAACAGTAATTCTGTA
37673693 AA-CTGAGGGTAAAACTA-TAATTCTGTA
1 AATC-GAGGGTAAAAC-AGTAATTCTGTA
* * **
37673720 AATCGAGGGTAAAACGGTAATTTTACA
1 AATCGAGGGTAAAACAGTAATTCTGTA
* *
37673747 AATCGAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAACAGTAATTCTGTA
* * **
37673774 AATCGAGGGTAAAACGGTAATTTTACA
1 AATCGAGGGTAAAACAGTAATTCTGTA
* *
37673801 AATCGAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAACAGTAATTCTGTA
37673828 AATCGAGGGTAAAACAGTAATT
1 AATCGAGGGTAAAACAGTAATT
37673850 GGTAAACTAA
Statistics
Matches: 436, Mismatches: 43, Indels: 55
0.82 0.08 0.10
Matches are distributed among these distances:
25 4 0.01
26 52 0.12
27 367 0.84
28 11 0.03
29 2 0.00
ACGTcount: A:0.41, C:0.11, G:0.21, T:0.27
Consensus pattern (27 bp):
AATCGAGGGTAAAACAGTAATTCTGTA
Found at i:37676931 original size:6 final size:5
Alignment explanation
Indices: 37676867--37676935 Score: 57
Period size: 5 Copynumber: 12.4 Consensus size: 5
37676857 ACACCTATTA
* *
37676867 TTTAT TTTAT TTTATT TTTAT CTCTATAT TTTGAA ATTAT ATTTAT TTTAT
1 TTTAT TTTAT TTTA-T TTTAT -T-T-TAT TTT-AT TTTAT -TTTAT TTTAT
37676918 TTTAT TTTATT TTTAT TT
1 TTTAT TTTA-T TTTAT TT
37676936 CCTTTTAATA
Statistics
Matches: 53, Mismatches: 4, Indels: 14
0.75 0.06 0.20
Matches are distributed among these distances:
5 29 0.55
6 19 0.36
7 2 0.04
8 3 0.06
ACGTcount: A:0.23, C:0.03, G:0.01, T:0.72
Consensus pattern (5 bp):
TTTAT
Found at i:37683803 original size:90 final size:90
Alignment explanation
Indices: 37683701--37683880 Score: 342
Period size: 90 Copynumber: 2.0 Consensus size: 90
37683691 TATATCCGGA
*
37683701 AAAGGGAAAAAATAAAATGGAAATTACAGCCCCTATTTTTCTTCTCTATTTTCTGCTATTTTTAC
1 AAAGGGAAAAAATAAAATGGAAATTACAACCCCTATTTTTCTTCTCTATTTTCTGCTATTTTTAC
37683766 TATTTGTTGTTGGTTATTTGCTGTG
66 TATTTGTTGTTGGTTATTTGCTGTG
37683791 AAAGGGAAAAAATAAAATGGAAATTACAACCCCTATTTTTCTTCTCTATTTTCTGCTATTTTTAC
1 AAAGGGAAAAAATAAAATGGAAATTACAACCCCTATTTTTCTTCTCTATTTTCTGCTATTTTTAC
*
37683856 TATTTGTTGTTGGTTATTTGTTGTG
66 TATTTGTTGTTGGTTATTTGCTGTG
37683881 CTCGCTTCTT
Statistics
Matches: 88, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
90 88 1.00
ACGTcount: A:0.27, C:0.13, G:0.15, T:0.45
Consensus pattern (90 bp):
AAAGGGAAAAAATAAAATGGAAATTACAACCCCTATTTTTCTTCTCTATTTTCTGCTATTTTTAC
TATTTGTTGTTGGTTATTTGCTGTG
Found at i:37684791 original size:89 final size:90
Alignment explanation
Indices: 37684623--37684796 Score: 201
Period size: 89 Copynumber: 1.9 Consensus size: 90
37684613 GGCTGATGAT
* * * * * *
37684623 TTAAATCTGCTCCATTTTCGATATATGGAGATAAGATTCACCATCTGGTATTTTCTCTGCTGCAA
1 TTAAATCTGCTCCATTGTCGATACATGGAGATAAGATTCACCATCTCGTATCTACTCCGCTGCAA
* *
37684688 CTTTAGGGAAAT-AAATCTTGGAGC
66 CTTCAGAGAAATAAAATCTTGGAGC
** *
37684712 TTAAATCTGCTCCATTGTCGATACATGGAGATAAGATTTGCC-TCTTTCG-ATCTACTCCGCTGT
1 TTAAATCTGCTCCATTGTCGATACATGGAGATAAGATTCACCATC--TCGTATCTACTCCGCTGC
*
37684775 AACTTCAGAGAGATAAAATCTT
64 AACTTCAGAGAAATAAAATCTT
37684797 TAATCTTTAG
Statistics
Matches: 70, Mismatches: 12, Indels: 5
0.80 0.14 0.06
Matches are distributed among these distances:
88 2 0.03
89 59 0.84
90 9 0.13
ACGTcount: A:0.28, C:0.20, G:0.17, T:0.35
Consensus pattern (90 bp):
TTAAATCTGCTCCATTGTCGATACATGGAGATAAGATTCACCATCTCGTATCTACTCCGCTGCAA
CTTCAGAGAAATAAAATCTTGGAGC
Found at i:37684868 original size:43 final size:43
Alignment explanation
Indices: 37684815--37685056 Score: 152
Period size: 43 Copynumber: 5.5 Consensus size: 43
37684805 AGTCTACTTC
* *
37684815 CTTGCTACCTCAGAAAGATAAGACTCATTCTTCAACCTGCTCT
1 CTTGCTACCTCAGAGAGATAAGACTCATTCTTCAATCTGCTCT
* ** * * *
37684858 CTTGCTACCTCAGAGAGATAAGGCTGGTGGCTTAAATCTGATC-
1 CTTGCTACCTCAGAGAGATAAGACTCAT-TCTTCAATCTGCTCT
* * * * **
37684901 CACTGCCA-ATACATG-GAGATAAGATTCATCATCTTCGGTCTGCTC-
1 C-TTGCTACCT-CA-GAGAGATAAGACTCAT--TCTTCAATCTGCTCT
* * * * *
37684946 CGCTGCAACTTCAGAGAGATAAGATCTTCCA-TCTTCAGTCTGCTTT
1 C-TTGCTACCTCAGAGAGATAAGA-C-T-CATTCTTCAATCTGCTCT
* * * *
37684992 CTTGCTACCTCAGAAAGATAAGACTCATTCTTTAACCTACTCT
1 CTTGCTACCTCAGAGAGATAAGACTCATTCTTCAATCTGCTCT
37685035 CTTGCTACCTCAGAGAGATAAG
1 CTTGCTACCTCAGAGAGATAAG
37685057 GCTGGTGGCT
Statistics
Matches: 150, Mismatches: 37, Indels: 24
0.71 0.18 0.11
Matches are distributed among these distances:
42 2 0.01
43 58 0.39
44 28 0.19
45 57 0.38
46 2 0.01
47 1 0.01
48 2 0.01
ACGTcount: A:0.27, C:0.26, G:0.17, T:0.30
Consensus pattern (43 bp):
CTTGCTACCTCAGAGAGATAAGACTCATTCTTCAATCTGCTCT
Found at i:37684926 original size:177 final size:177
Alignment explanation
Indices: 37684710--37685675 Score: 1105
Period size: 177 Copynumber: 5.5 Consensus size: 177
37684700 AAATCTTGGA
* *
37684710 GCTTAAATCTGCTCCATTGTCGATACATGGAGATAAGATTTGCC-TCTTTCGATCTACTCCGCTG
1 GCTTAAATCTGCTCCATTGCCGATACATGGAGATAAGATTTGCCATC-TTCGATCTGCTCCGCTG
* * * *
37684774 TAACTTCAGAGAGATAAAATCTTTAATCTTTAGTCTACTTCCTTGCTACCTCAGAAAGATAAGAC
65 TAACTTCAGAGAGATAAGATCTTCAATCTTCAGTCTGCTTCCTTGCTACCTCAGAAAGATAAGAC
*
37684839 TCATTCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTGGTG
130 TCAATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTGGTG
* * * *** * *
37684887 GCTTAAATCTGATCCACTGCCAATACATGGAGATAAGATTCATCATCTTCGGTCTGCTCCGCTGC
1 GCTTAAATCTGCTCCATTGCCGATACATGGAGATAAGATTTGCCATCTTCGATCTGCTCCGCTGT
* *
37684952 AACTTCAGAGAGATAAGATCTTCCATCTTCAGTCTGCTTTCTTGCTACCTCAGAAAGATAAGACT
66 AACTTCAGAGAGATAAGATCTTCAATCTTCAGTCTGCTTCCTTGCTACCTCAGAAAGATAAGACT
* * *
37685017 CATTCTTTAACCTACTCTCTTGCTACCTCAGAGAGATAAGGCTGGTG
131 CAATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTGGTG
* * * * ** *
37685064 GCTTAAATCTGCTCTATTACCGATACATGGAGAGAAGGTTCACCATCTTCGATCTGCTCCAC--T
1 GCTTAAATCTGCTCCATTGCCGATACATGGAGATAAGATTTGCCATCTTCGATCTGCTCCGCTGT
* * * * * * * * *
37685127 -ACTGCTTG-GTAGCTTAGATCTTCCATCTTCAGTCTGCTTCCTTTCTACTTTAGGAAGATAAGA
66 AACTTC-AGAG-AGATAAGATCTTCAATCTTCAGTCTGCTTCCTTGCTACCTCAGAAAGATAAGA
* ** * *
37685190 CTCAATATTCAAGTTGCTCTCTTGCTACCTC--AGAGATAAGG-TAGTA
129 CTCAATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTGGTG
** * * * * *
37685236 GCTTAAATCTGCTCCATTGCTAATACATGGAAATAAGATTAGCCATTTTCGATCTGCTCTGCTAT
1 GCTTAAATCTGCTCCATTGCCGATACATGGAGATAAGATTTGCCATCTTCGATCTGCTCCGCTGT
* * * * *
37685301 AACTTTAGGGAGATAAGACCTTCAATCTTCAATTTGCTTCCTTGCTACC-CTATG-AAGATAAGA
66 AACTTCAGAGAGATAAGATCTTCAATCTTCAGTCTGCTTCCTTGCTACCTC-A-GAAAGATAAGA
* *
37685364 CTCAATCTTCAACCTGCTCTCTTGCTACCTTAGAGAGATAAGGCTGGAG
129 CTCAATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTGGTG
* * * *
37685413 GCTAAAATCTGCTCCATTTCCGATACATGGAGATAAGGTTTGCCATCTTCGATCTGCTCCAC--T
1 GCTTAAATCTGCTCCATTGCCGATACATGGAGATAAGATTTGCCATCTTCGATCTGCTCCGCTGT
* * * *
37685476 -ACTTCTTAGAGAGATAAGATCTTTAATCCTT-AGTTTGCTTCCTTGCTACCTTAGGAAGATAAG
66 AACTTC--AGAGAGATAAGATCTTCAAT-CTTCAGTCTGCTTCCTTGCTACCTCAGAAAGATAAG
* *
37685539 ACTTCAATCTTCAACCTGCTCTCTTGCTACCTTAGAGAGATAAAGCTGGTG
128 AC-TCAATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTGGTG
* * * * * *
37685590 GCTTAAATTTGCTCCATTACCGATACACGGAGATAAGATTCGCCATCTTCGATCTGCTCTGCTGC
1 GCTTAAATCTGCTCCATTGCCGATACATGGAGATAAGATTTGCCATCTTCGATCTGCTCCGCTGT
*
37685655 AACTTCAGGGAGATAAGATCT
66 AACTTCAGAGAGATAAGATCT
37685676 GACTTCACCC
Statistics
Matches: 663, Mismatches: 105, Indels: 41
0.82 0.13 0.05
Matches are distributed among these distances:
172 53 0.08
173 10 0.02
174 79 0.12
175 79 0.12
176 56 0.08
177 365 0.55
178 16 0.02
180 5 0.01
ACGTcount: A:0.27, C:0.24, G:0.17, T:0.32
Consensus pattern (177 bp):
GCTTAAATCTGCTCCATTGCCGATACATGGAGATAAGATTTGCCATCTTCGATCTGCTCCGCTGT
AACTTCAGAGAGATAAGATCTTCAATCTTCAGTCTGCTTCCTTGCTACCTCAGAAAGATAAGACT
CAATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTGGTG
Found at i:37685361 original size:349 final size:349
Alignment explanation
Indices: 37684706--37685672 Score: 1140
Period size: 349 Copynumber: 2.7 Consensus size: 349
37684696 AAATAAATCT
* ** * * ** *
37684706 TGGA-GCTTAAATCTGCTCCATTGTCGATACATGGAGATAAGATTTGCC-TCTTTCGATCTACTC
1 TGGAGGCTAAAATCTGCTCCATTACCGATACATGGAGAGAAGGTTCACCATC-TTCGATCTGCTC
* * * * * * * *
37684769 CGCT-GTAACTTCAGAGAGATAAAATCTTTAATCTTTAGTCTACTTCCTTGCTACCTCAGAAAGA
65 CACTACT-GCTT-AGAGAGATAAGATCTTCAATC-TTAGTCTGCTTCCTTGCTACCTTAGGAAGA
*
37684833 TAAGACTCATTCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGGCTTAAATCTG
127 TAAGACTCAATCTTCAACCTGCTCTCTTGCTACCTC--AGAGATAAGG-TGGTGGCTTAAATCTG
* * * * * *
37684898 ATCCACTGCCAATACATGGAGATAAGATTCA-TCATCTTCGGTCTGCTCCGCTGCAACTTCAGAG
189 CTCCATTGCCAATACATGGAGATAAGATT-AGCCATCTTCGATCTGCTCTGCTGCAACTTCAGGG
* * * * * *
37684962 AGATAAGATCTTCCATCTTCAGTCTGCTTTCTTGCTACCTCAGAAAGATAAGACTCATTCTTTAA
253 AGATAAGACCTTCAATCTTCAATCTGCTTCCTTGCTACCTCAGAAAGATAAGACTCAATCTTCAA
37685027 CCTACTCTCTTGCTACCTCAGAGAGATAAGGC
318 CCTACTCTCTTGCTACCTCAGAGAGATAAGGC
* * *
37685059 TGGTGGCTTAAATCTGCTCTATTACCGATACATGGAGAGAAGGTTCACCATCTTCGATCTGCTCC
1 TGGAGGCTAAAATCTGCTCCATTACCGATACATGGAGAGAAGGTTCACCATCTTCGATCTGCTCC
* * * * *
37685124 ACTACTGCTT-G-GTAGCTTAGATCTTCCATCTTCAGTCTGCTTCCTTTCTACTTTAGGAAGATA
66 ACTACTGCTTAGAG-AGATAAGATCTTCAATCTT-AGTCTGCTTCCTTGCTACCTTAGGAAGATA
* ** * *
37685187 AGACTCAATATTCAAGTTGCTCTCTTGCTACCTCAGAGATAAGGTAGTAGCTTAAATCTGCTCCA
129 AGACTCAATCTTCAACCTGCTCTCTTGCTACCTCAGAGATAAGGTGGTGGCTTAAATCTGCTCCA
* * * ** *
37685252 TTGCTAATACATGGAAATAAGATTAGCCATTTTCGATCTGCTCTGCTATAACTTTAGGGAGATAA
194 TTGCCAATACATGGAGATAAGATTAGCCATCTTCGATCTGCTCTGCTGCAACTTCAGGGAGATAA
* *
37685317 GACCTTCAATCTTCAATTTGCTTCCTTGCTACC-CTATG-AAGATAAGACTCAATCTTCAACCTG
259 GACCTTCAATCTTCAATCTGCTTCCTTGCTACCTC-A-GAAAGATAAGACTCAATCTTCAACCTA
*
37685380 CTCTCTTGCTACCTTAGAGAGATAAGGC
322 CTCTCTTGCTACCTCAGAGAGATAAGGC
* * **
37685408 TGGAGGCTAAAATCTGCTCCATTTCCGATACATGGAGATAAGGTTTGCCATCTTCGATCTGCTCC
1 TGGAGGCTAAAATCTGCTCCATTACCGATACATGGAGAGAAGGTTCACCATCTTCGATCTGCTCC
* * *
37685473 ACTACTTCTTAGAGAGATAAGATCTTTAATCCTTAGTTTGCTTCCTTGCTACCTTAGGAAGATAA
66 ACTACTGCTTAGAGAGATAAGATCTTCAAT-CTTAGTCTGCTTCCTTGCTACCTTAGGAAGATAA
* * *
37685538 GACTTCAATCTTCAACCTGCTCTCTTGCTACCTTAGAGAGATAAAGCTGGTGGCTTAAATTTGCT
130 GAC-TCAATCTTCAACCTGCTCTCTTGCTACC-T-CAGAGAT-AAGGTGGTGGCTTAAATCTGCT
* * * *
37685603 CCATTACCGATACACGGAGATAAGATTCGCCATCTTCGATCTGCTCTGCTGCAACTTCAGGGAGA
191 CCATTGCCAATACATGGAGATAAGATTAGCCATCTTCGATCTGCTCTGCTGCAACTTCAGGGAGA
37685668 TAAGA
256 TAAGA
37685673 TCTGACTTCA
Statistics
Matches: 517, Mismatches: 82, Indels: 29
0.82 0.13 0.05
Matches are distributed among these distances:
348 2 0.00
349 215 0.42
350 55 0.11
351 32 0.06
352 69 0.13
353 9 0.02
354 132 0.26
355 3 0.01
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.32
Consensus pattern (349 bp):
TGGAGGCTAAAATCTGCTCCATTACCGATACATGGAGAGAAGGTTCACCATCTTCGATCTGCTCC
ACTACTGCTTAGAGAGATAAGATCTTCAATCTTAGTCTGCTTCCTTGCTACCTTAGGAAGATAAG
ACTCAATCTTCAACCTGCTCTCTTGCTACCTCAGAGATAAGGTGGTGGCTTAAATCTGCTCCATT
GCCAATACATGGAGATAAGATTAGCCATCTTCGATCTGCTCTGCTGCAACTTCAGGGAGATAAGA
CCTTCAATCTTCAATCTGCTTCCTTGCTACCTCAGAAAGATAAGACTCAATCTTCAACCTACTCT
CTTGCTACCTCAGAGAGATAAGGC
Found at i:37685374 original size:43 final size:45
Alignment explanation
Indices: 37685310--37685405 Score: 119
Period size: 43 Copynumber: 2.2 Consensus size: 45
37685300 TAACTTTAGG
**
37685310 GAGATAAGACCTTCAATCTTCAATTTGCT-TCCTTGCTACCCTATGA
1 GAGATAAGACCTTCAATCTTCAACCTGCTCT-CTTGCTACCCTA-GA
*
37685356 -AGATAAGA-C-TCAATCTTCAACCTGCTCTCTTGCTACCTTAGA
1 GAGATAAGACCTTCAATCTTCAACCTGCTCTCTTGCTACCCTAGA
37685398 GAGATAAG
1 GAGATAAG
37685406 GCTGGAGGCT
Statistics
Matches: 45, Mismatches: 3, Indels: 7
0.82 0.05 0.13
Matches are distributed among these distances:
42 2 0.04
43 33 0.73
44 2 0.04
45 8 0.18
ACGTcount: A:0.29, C:0.25, G:0.15, T:0.31
Consensus pattern (45 bp):
GAGATAAGACCTTCAATCTTCAACCTGCTCTCTTGCTACCCTAGA
Found at i:37695198 original size:40 final size:40
Alignment explanation
Indices: 37695031--37695183 Score: 148
Period size: 40 Copynumber: 3.8 Consensus size: 40
37695021 CATTTGAATG
* * *
37695031 ATATCCAGGCTAAGTCCCGAAGGCATTTATGCTAGTGATT
1 ATATCCAGGCTAAGACCCGAAGGCAATTGTGCTAGTGATT
* * *
37695071 ATGTCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTG-TT
1 ATATCCAGGCTAAGACCCGAAGGCAATT-GTGCTAG-TGATT
* * * **
37695111 ATATCCAGGCTAAGACCCGAAGGCAATGGTGCAAGTTACC
1 ATATCCAGGCTAAGACCCGAAGGCAATTGTGCTAGTGATT
* * *
37695151 AAATCCGGGTTAAGACCCGAAGGCAATTGTGCT
1 ATATCCAGGCTAAGACCCGAAGGCAATTGTGCT
37695184 TGTGGTTGTA
Statistics
Matches: 91, Mismatches: 18, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
39 3 0.03
40 84 0.92
41 4 0.04
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.24
Consensus pattern (40 bp):
ATATCCAGGCTAAGACCCGAAGGCAATTGTGCTAGTGATT
Found at i:37712368 original size:28 final size:27
Alignment explanation
Indices: 37712305--37712374 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
37712295 ATAGTGAGTC
*
37712305 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
*
37712332 CGCACACTTAGTGCTACATGATCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
37712360 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
37712375 GTACAAGTTT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 21 0.52
28 19 0.47
ACGTcount: A:0.30, C:0.29, G:0.14, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:37714235 original size:24 final size:24
Alignment explanation
Indices: 37714208--37714258 Score: 86
Period size: 24 Copynumber: 2.1 Consensus size: 24
37714198 AAATTAAATA
37714208 AATATGATGAA-AATGATGGTGCAC
1 AATATGATGAAGAA-GATGGTGCAC
37714232 AATATGATGAAGAAGATGGTGCAC
1 AATATGATGAAGAAGATGGTGCAC
37714256 AAT
1 AAT
37714259 CTTGACGCAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
24 24 0.92
25 2 0.08
ACGTcount: A:0.43, C:0.08, G:0.25, T:0.24
Consensus pattern (24 bp):
AATATGATGAAGAAGATGGTGCAC
Found at i:37717026 original size:28 final size:28
Alignment explanation
Indices: 37716957--37717057 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
37716947 GACAAGATTG
* * * *
37716957 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
37716987 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
37717015 GCACTAAGTGTGCGAG-CTGAATGTATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
37717044 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
37717058 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 2 0.03
28 24 0.38
29 20 0.31
30 18 0.28
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:37717051 original size:29 final size:28
Alignment explanation
Indices: 37716986--37717057 Score: 110
Period size: 29 Copynumber: 2.5 Consensus size: 28
37716976 AAAATTGTAC
*
37716986 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTCTGATTATAT
37717014 AGCACTAAGTGTGCGAG-CTGAATGTATAT
1 AGCACTAAGTGTGCGAGTCTG-AT-TATAT
37717043 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
37717058 GATTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
27 2 0.05
28 19 0.46
29 20 0.49
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTCTGATTATAT
Found at i:37726440 original size:80 final size:80
Alignment explanation
Indices: 37726303--37726509 Score: 229
Period size: 80 Copynumber: 2.6 Consensus size: 80
37726293 AATTAAATGA
* ** * * *
37726303 TATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAGTTAAATCCAGGTTAAGACCCGAAGGCAA
1 TATCCGGGCTAAGACCCGAAGACATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGCAA
*
37726368 TTATGCTAGT-G-AC
66 TTATGCAAGTCGTAC
* * * *
37726381 TAAATCCGGGCTAAGGCCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGC
1 T--ATCCGGGCTAAGACCCGAAGACATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGC
* * *
37726446 ATTTGTGCAAGTCGTTC
64 AATTATGCAAGTCGTAC
* * *
37726463 TATCCGGGCTAAGACCCGAAGACATTCGTGCATGTGGTTATATCCGG
1 TATCCGGGCTAAGACCCGAAGACATTCGTGCAAGTAGTTAAATCCGG
37726510 TTGTATTCCG
Statistics
Matches: 107, Mismatches: 18, Indels: 6
0.82 0.14 0.05
Matches are distributed among these distances:
78 1 0.01
80 103 0.96
81 1 0.01
82 2 0.02
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (80 bp):
TATCCGGGCTAAGACCCGAAGACATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGCAA
TTATGCAAGTCGTAC
Found at i:37726494 original size:40 final size:40
Alignment explanation
Indices: 37726302--37726509 Score: 186
Period size: 40 Copynumber: 5.2 Consensus size: 40
37726292 CAATTAAATG
* * ** * *
37726302 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTT
* * * * * *
37726342 AAATCCAGGTTAAGACCCGAAGGCAATT-ATGCTAGT-GACT
1 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTCG-TT
* * *
37726382 AAATCCGGGCTAAGGCCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTT
* * *
37726422 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTT
* * * *
37726462 CTATCCGGGCTAAGACCCGAAGACATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTT
37726502 ATATCCGG
1 ATATCCGG
37726510 TTGTATTCCG
Statistics
Matches: 140, Mismatches: 24, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
39 4 0.03
40 132 0.94
41 4 0.03
ACGTcount: A:0.27, C:0.22, G:0.25, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTT
Found at i:37728008 original size:28 final size:28
Alignment explanation
Indices: 37727939--37728039 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
37727929 GACAAGATTG
* * * *
37727939 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
37727969 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
37727997 GCACTAAGTGTGCGAG-CTGAATGTATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
37728026 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
37728040 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 2 0.03
28 24 0.38
29 20 0.31
30 18 0.28
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:37728033 original size:29 final size:28
Alignment explanation
Indices: 37727968--37728039 Score: 110
Period size: 29 Copynumber: 2.5 Consensus size: 28
37727958 AAAATTGTAC
*
37727968 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTCTGATTATAT
37727996 AGCACTAAGTGTGCGAG-CTGAATGTATAT
1 AGCACTAAGTGTGCGAGTCTG-AT-TATAT
37728025 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
37728040 GATTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
27 2 0.05
28 19 0.46
29 20 0.49
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTCTGATTATAT
Found at i:37735265 original size:26 final size:27
Alignment explanation
Indices: 37735236--37735299 Score: 67
Period size: 32 Copynumber: 2.2 Consensus size: 27
37735226 CATATGGGTT
*
37735236 TGATATC-GAAATGGGCTAGGCCCAAC
1 TGATATCTAAAATGGGCTAGGCCCAAC
37735262 TGATATTGATTCTAAAATGGGCTAGGCCCAAC
1 TG--A-T-A-TCTAAAATGGGCTAGGCCCAAC
37735294 TGATAT
1 TGATAT
37735300 TGACTCTGAG
Statistics
Matches: 31, Mismatches: 1, Indels: 11
0.72 0.02 0.26
Matches are distributed among these distances:
26 2 0.06
27 1 0.03
28 2 0.06
29 2 0.06
30 2 0.06
31 2 0.06
32 20 0.65
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.27
Consensus pattern (27 bp):
TGATATCTAAAATGGGCTAGGCCCAAC
Found at i:37735280 original size:32 final size:32
Alignment explanation
Indices: 37735244--37735324 Score: 135
Period size: 32 Copynumber: 2.5 Consensus size: 32
37735234 TTTGATATCG
*
37735244 AAATGGGCTAGGCCCAACTGATATTGATTCTA
1 AAATGGGCTAGGCCCAACTGATATTGACTCTA
*
37735276 AAATGGGCTAGGCCCAACTGATATTGACTCTG
1 AAATGGGCTAGGCCCAACTGATATTGACTCTA
*
37735308 AGATGGGCTAGGCCCAA
1 AAATGGGCTAGGCCCAA
37735325 TTGAGACTGT
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 46 1.00
ACGTcount: A:0.30, C:0.21, G:0.26, T:0.23
Consensus pattern (32 bp):
AAATGGGCTAGGCCCAACTGATATTGACTCTA
Found at i:37741040 original size:78 final size:80
Alignment explanation
Indices: 37740946--37741096 Score: 209
Period size: 78 Copynumber: 1.9 Consensus size: 80
37740936 GGTTATAGCG
* * * *
37740946 ACTCGCACGAATGCCTTCGGGA-CTTAACCCGGGTTTAGTAACTT-GCACAATGCCTTC-GGACT
1 ACTCGCACGAATGCCTTC-GGATCCTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACT
37741008 TAGCCCGGATTTATTA
65 TAGCCCGGATTTATTA
** *
37741024 ACTCGCACGAATGCCTTCGGATCCTAGTCCGGATATAGTCACTTAGCACAAAGCCTTCGGGACTT
1 ACTCGCACGAATGCCTTCGGATCCTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACTT
37741089 AGCCCGGA
66 AGCCCGGA
37741097 CATCATTCGA
Statistics
Matches: 63, Mismatches: 7, Indels: 4
0.85 0.09 0.05
Matches are distributed among these distances:
77 3 0.05
78 34 0.54
79 12 0.19
80 14 0.22
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.25
Consensus pattern (80 bp):
ACTCGCACGAATGCCTTCGGATCCTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACTT
AGCCCGGATTTATTA
Found at i:37741096 original size:40 final size:39
Alignment explanation
Indices: 37740894--37741096 Score: 176
Period size: 40 Copynumber: 5.1 Consensus size: 39
37740884 CGGAATTTAA
* * * **
37740894 CCGGATATAATGACTCGCTCAAATGCCTTCGGGACGAAGC
1 CCGGATATAGTAACTCGCAC-AATGCCTTCGGGACTTAGC
* ** *
37740934 CCGGTTATAGCGACTCGCACGAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCAC-AATGCCTTCGGGACTTAGC
* * *
37740974 CCGGGTTTAGTAACTTGCACAATGCCTTC-GGACTTAGC
1 CCGGATATAGTAACTCGCACAATGCCTTCGGGACTTAGC
* * * *
37741012 CCGGATTTATTAACTCGCACGAATGCCTTC-GGATCCTAGT
1 CCGGATATAGTAACTCGCAC-AATGCCTTCGGGA-CTTAGC
* * *
37741052 CCGGATATAGTCACTTAGCACAAAGCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAATGCCTTCGGGACTTAGC
37741092 CCGGA
1 CCGGA
37741097 CATCATTCGA
Statistics
Matches: 133, Mismatches: 26, Indels: 8
0.80 0.16 0.05
Matches are distributed among these distances:
38 25 0.19
39 21 0.16
40 79 0.59
41 8 0.06
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (39 bp):
CCGGATATAGTAACTCGCACAATGCCTTCGGGACTTAGC
Found at i:37746545 original size:393 final size:393
Alignment explanation
Indices: 37746050--37746842 Score: 1568
Period size: 393 Copynumber: 2.0 Consensus size: 393
37746040 ATTGGTGGTA
37746050 AATATGATTTTAGGTGTAATGAAAAGCTTGAGAAACAACCATGTTTGGATTTGGCAAATAGGTGA
1 AATA-GATTTTAGGTGTAATGAAAAGCTTGAGAAACAACCATGTTTGGATTTGGCAAATAGGTGA
37746115 ATTAACTTTCGGTGGCTGTTAAATATTTGAGGTGTCTTGTATTTGTTATTAAAGTTGGATTGTTC
65 ATTAACTTTCGGTGGCTGTTAAATATTTGAGGTGTCTTGTATTTGTTATTAAAGTTGGATTGTTC
37746180 TGACTATATAGATTTATATATATTTAGCCAAATATGTGGCTATTAAATTAGTTTTGAATATGATT
130 TGACTATATAGATTTATATATATTTAGCCAAATATGTGGCTATTAAATTAGTTTTGAATATGATT
37746245 TTTGCTAATTTGATTGATATGTGATAATAGCATGTTAAAATTTTAGTTGGTATGCTAAAATGTTG
195 TTTGCTAATTTGATTGATATGTGATAATAGCATGTTAAAATTTTAGTTGGTATGCTAAAATGTTG
37746310 GACGAATAGTTAATATGTATTGTATCAATATATATATAAATATAATTGATGTTTTGGTGTGAAGG
260 GACGAATAGTTAATATGTATTGTATCAATATATATATAAATATAATTGATGTTTTGGTGTGAAGG
37746375 TTAAAATAATATGTTTGATATTCGGTTTGGTTATTGGAAATGTTTCATATGTGTAAAGTGATTGA
325 TTAAAATAATATGTTTGATATTCGGTTTGGTTATTGGAAATGTTTCATATGTGTAAAGTGATTGA
37746440 GCAT
390 GCAT
37746444 AATAGATTTTAGGTGTAATGAAAAGCTTGAGAAACAACCATGTTTGGATTTGGCAAATAGGTGAA
1 AATAGATTTTAGGTGTAATGAAAAGCTTGAGAAACAACCATGTTTGGATTTGGCAAATAGGTGAA
37746509 TTAACTTTCGGTGGCTGTTAAATATTTGAGGTGTCTTGTATTTGTTATTAAAGTTGGATTGTTCT
66 TTAACTTTCGGTGGCTGTTAAATATTTGAGGTGTCTTGTATTTGTTATTAAAGTTGGATTGTTCT
*
37746574 GACTATATAGATTTATATATATTTAGCCGAATATGTGGCTATTAAATTAGTTTTGAATATGATTT
131 GACTATATAGATTTATATATATTTAGCCAAATATGTGGCTATTAAATTAGTTTTGAATATGATTT
37746639 TTGCTAATTTGATTGATATGTGATAATAGCATGTTAAAATTTTAGTTGGTATGCTAAAATGTTGG
196 TTGCTAATTTGATTGATATGTGATAATAGCATGTTAAAATTTTAGTTGGTATGCTAAAATGTTGG
37746704 ACGAATAGTTAATATGTATTGTATCAATATATATATAAATATAATTGATGTTTTGGTGTGAAGGT
261 ACGAATAGTTAATATGTATTGTATCAATATATATATAAATATAATTGATGTTTTGGTGTGAAGGT
37746769 TAAAATAATATGTTTGATATTCGGTTTGGTTATTGGAAATGTTTCATATGTGTAAAGTGATTGAG
326 TAAAATAATATGTTTGATATTCGGTTTGGTTATTGGAAATGTTTCATATGTGTAAAGTGATTGAG
37746834 CAT
391 CAT
37746837 AATAGA
1 AATAGA
37746843 AGTTGACATC
Statistics
Matches: 398, Mismatches: 1, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
393 394 0.99
394 4 0.01
ACGTcount: A:0.32, C:0.06, G:0.21, T:0.42
Consensus pattern (393 bp):
AATAGATTTTAGGTGTAATGAAAAGCTTGAGAAACAACCATGTTTGGATTTGGCAAATAGGTGAA
TTAACTTTCGGTGGCTGTTAAATATTTGAGGTGTCTTGTATTTGTTATTAAAGTTGGATTGTTCT
GACTATATAGATTTATATATATTTAGCCAAATATGTGGCTATTAAATTAGTTTTGAATATGATTT
TTGCTAATTTGATTGATATGTGATAATAGCATGTTAAAATTTTAGTTGGTATGCTAAAATGTTGG
ACGAATAGTTAATATGTATTGTATCAATATATATATAAATATAATTGATGTTTTGGTGTGAAGGT
TAAAATAATATGTTTGATATTCGGTTTGGTTATTGGAAATGTTTCATATGTGTAAAGTGATTGAG
CAT
Found at i:37749346 original size:14 final size:15
Alignment explanation
Indices: 37749324--37749361 Score: 53
Period size: 14 Copynumber: 2.6 Consensus size: 15
37749314 AAAGAAACAA
37749324 GAAGAAGGAAAAGAG
1 GAAGAAGGAAAAGAG
37749339 GAAG-AGGAAAAGA-
1 GAAGAAGGAAAAGAG
37749352 GAACGAAGGA
1 GAA-GAAGGA
37749362 GGTGAAACAT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
13 3 0.14
14 10 0.48
15 8 0.38
ACGTcount: A:0.58, C:0.03, G:0.39, T:0.00
Consensus pattern (15 bp):
GAAGAAGGAAAAGAG
Found at i:37750973 original size:16 final size:16
Alignment explanation
Indices: 37750952--37750982 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
37750942 TTGTAACGCC
37750952 CCAAAAATCCCGAAAG
1 CCAAAAATCCCGAAAG
*
37750968 CCAAAAATCCTGAAA
1 CCAAAAATCCCGAAA
37750983 TCTCAAACTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.52, C:0.29, G:0.10, T:0.10
Consensus pattern (16 bp):
CCAAAAATCCCGAAAG
Found at i:37751878 original size:28 final size:23
Alignment explanation
Indices: 37751823--37751891 Score: 59
Period size: 24 Copynumber: 2.8 Consensus size: 23
37751813 TATTGATTTA
37751823 TGAAAATTATAATTATTATTATT
1 TGAAAATTATAATTATTATTATT
*
37751846 AGAAAATATATATATATATTATCGTATT
1 TGAAAAT-TATA-AT-TATTAT--TATT
* *
37751874 TG-AAATTTTCATTATTAT
1 TGAAAATTATAATTATTAT
37751892 GGTTATTATT
Statistics
Matches: 37, Mismatches: 4, Indels: 9
0.74 0.08 0.18
Matches are distributed among these distances:
23 6 0.16
24 10 0.27
25 4 0.11
26 8 0.22
27 4 0.11
28 5 0.14
ACGTcount: A:0.42, C:0.03, G:0.06, T:0.49
Consensus pattern (23 bp):
TGAAAATTATAATTATTATTATT
Found at i:37759160 original size:27 final size:27
Alignment explanation
Indices: 37759119--37759172 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
37759109 TGTCATGTGA
37759119 AATTGAATGGCAAATTA-TTATTACATG
1 AATTGAATGGCAAATTACTT-TTACATG
**
37759146 AATTGAATGTTAAATTACTTTTACATG
1 AATTGAATGGCAAATTACTTTTACATG
37759173 GGTTGTATGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
27 22 0.92
28 2 0.08
ACGTcount: A:0.39, C:0.07, G:0.13, T:0.41
Consensus pattern (27 bp):
AATTGAATGGCAAATTACTTTTACATG
Found at i:37759483 original size:49 final size:50
Alignment explanation
Indices: 37759418--37759664 Score: 255
Period size: 49 Copynumber: 5.0 Consensus size: 50
37759408 ATCTATTTTG
* * *
37759418 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACGACGTGTACTGGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
* * * * *
37759468 -GGTCGCATGTGTAGTACTAAGTGCAGGTTACTATGCGTACCCGATAACTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAA-TT
* * * * * **
37759518 CGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
* * * *
37759568 AGGTCACGTGTGTAGTACTAAGTGCAGGATGCTACATGTACCGGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
* * * * *
37759618 -GGTCGCATGTATAGTACTAAGTGCAGGCTACTATGCGTACCAGATAA
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAA
37759665 CCTTGTCTAC
Statistics
Matches: 159, Mismatches: 36, Indels: 5
0.80 0.18 0.03
Matches are distributed among these distances:
49 77 0.48
50 45 0.28
51 37 0.23
ACGTcount: A:0.26, C:0.18, G:0.28, T:0.28
Consensus pattern (50 bp):
AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
Found at i:37762385 original size:13 final size:13
Alignment explanation
Indices: 37762369--37762395 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
37762359 TATCTATATA
37762369 TGGCATGTATAGT
1 TGGCATGTATAGT
37762382 TGGCATGTATAGT
1 TGGCATGTATAGT
37762395 T
1 T
37762396 AGACTCTCAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.22, C:0.07, G:0.30, T:0.41
Consensus pattern (13 bp):
TGGCATGTATAGT
Found at i:37767397 original size:131 final size:130
Alignment explanation
Indices: 37767130--37767584 Score: 666
Period size: 131 Copynumber: 3.5 Consensus size: 130
37767120 AATGAAAAAC
* * * * * * * *
37767130 CGAAACCCAGCACGGTAGGGCACGATTCCTCAAATTTCCGAACATTGAACATTGCCTCGCTTTAG
1 CGAAACCCAGCACGATAGGGCACTATTCCCCGAATTTCCAAACATCGAACATTGCCTTGTTTTAG
* * **
37767195 CATTT----AGAAAACACGAGTGAAATTCCAAAGGAATATTCGATTATTTTGAACAAACGGGAAA
66 CGTTTGGAAAAAAAACACGAGT-AAATTTTAAAGGAATATTCGATTATTTTGAACAAACGGGAAA
37767256 T
130 T
*
37767257 CGAAACCCAGCACGATAGGGCACTATTCCCCGAATTTTCAAACATCGAACATTGCCTTGTTTTAG
1 CGAAACCCAGCACGATAGGGCACTATTCCCCGAATTTCCAAACATCGAACATTGCCTTGTTTTAG
*
37767322 CGTTTGGAAAAAAAACACGAGTAAATTTTTAAAGGAATATTCGATTATTTTGAACAAGCGGGAAA
66 CGTTTGGAAAAAAAACACGAGTAAA-TTTTAAAGGAATATTCGATTATTTTGAACAAACGGGAAA
37767387 T
130 T
* *
37767388 CGAAACCCAGCACGATAGGGCACTATTCCTCGAATTTCCAAACATCAAACATTGCCTTGTTTTAG
1 CGAAACCCAGCACGATAGGGCACTATTCCCCGAATTTCCAAACATCGAACATTGCCTTGTTTTAG
* * *
37767453 AGTTTGGAAAAAAAACACGAGTAAAATTTTAAAGGAATATTCGATTATTTTGAATAAACAGGAAA
66 CGTTTGGAAAAAAAACACGAGT-AAATTTTAAAGGAATATTCGATTATTTTGAACAAACGGGAAA
37767518 T
130 T
*
37767519 CGAAACCCAGCACGATAGGGCACTATTCCCCGAATTTCCAAACATCGAACATTACCTTTGTTTTA
1 CGAAACCCAGCACGATAGGGCACTATTCCCCGAATTTCCAAACATCGAACATTGCC-TTGTTTTA
37767584 G
65 G
37767585 TGAATCTTCA
Statistics
Matches: 297, Mismatches: 24, Indels: 9
0.90 0.07 0.03
Matches are distributed among these distances:
127 60 0.20
130 3 0.01
131 222 0.75
132 12 0.04
ACGTcount: A:0.36, C:0.20, G:0.17, T:0.26
Consensus pattern (130 bp):
CGAAACCCAGCACGATAGGGCACTATTCCCCGAATTTCCAAACATCGAACATTGCCTTGTTTTAG
CGTTTGGAAAAAAAACACGAGTAAATTTTAAAGGAATATTCGATTATTTTGAACAAACGGGAAAT
Found at i:37767915 original size:2 final size:2
Alignment explanation
Indices: 37767908--37767942 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
37767898 CTATGAAATA
37767908 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
37767943 AACCAATCAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:37769359 original size:35 final size:36
Alignment explanation
Indices: 37769320--37769391 Score: 128
Period size: 35 Copynumber: 2.0 Consensus size: 36
37769310 ATGAAAGAGG
37769320 AAAATCAGAAAGAAAAAAAG-ATGAACCACCTTGAA
1 AAAATCAGAAAGAAAAAAAGAATGAACCACCTTGAA
*
37769355 AAAATCAGAGAGAAAAAAAGAATGAACCACCTTGAA
1 AAAATCAGAAAGAAAAAAAGAATGAACCACCTTGAA
37769391 A
1 A
37769392 TCTTTCTTTT
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
35 19 0.54
36 16 0.46
ACGTcount: A:0.60, C:0.14, G:0.15, T:0.11
Consensus pattern (36 bp):
AAAATCAGAAAGAAAAAAAGAATGAACCACCTTGAA
Found at i:37770109 original size:20 final size:20
Alignment explanation
Indices: 37770084--37770122 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
37770074 CCTATGATCG
37770084 ATTAAAT-ATCTAATTATCAA
1 ATTAAATAAT-TAATTATCAA
37770104 ATTAAATAATTAATTATCA
1 ATTAAATAATTAATTATCA
37770123 TCGATTGATT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 16 0.89
21 2 0.11
ACGTcount: A:0.51, C:0.08, G:0.00, T:0.41
Consensus pattern (20 bp):
ATTAAATAATTAATTATCAA
Found at i:37774893 original size:29 final size:29
Alignment explanation
Indices: 37774854--37774933 Score: 108
Period size: 29 Copynumber: 2.7 Consensus size: 29
37774844 CTTAATAATC
*
37774854 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
37774884 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
37774913 AGCCCGCACACTTAGTGCCAT
1 AACCCGCACACTTAGTGCCAT
37774934 TCTCTCAACC
Statistics
Matches: 45, Mismatches: 4, Indels: 3
0.87 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 39 0.87
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.25
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:37777481 original size:17 final size:17
Alignment explanation
Indices: 37777447--37777498 Score: 68
Period size: 17 Copynumber: 2.9 Consensus size: 17
37777437 TCCTGATTTA
37777447 TTTATTTATTCTATTTTTC
1 TTTATTTATT-TA-TTTTC
37777466 TTTATTTATTTATTTTC
1 TTTATTTATTTATTTTC
* *
37777483 GTTATTTATTTGTTTT
1 TTTATTTATTTATTTT
37777499 TATTCTCTTA
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
17 19 0.61
18 2 0.06
19 10 0.32
ACGTcount: A:0.15, C:0.06, G:0.04, T:0.75
Consensus pattern (17 bp):
TTTATTTATTTATTTTC
Found at i:37780601 original size:87 final size:87
Alignment explanation
Indices: 37780458--37780621 Score: 274
Period size: 87 Copynumber: 1.9 Consensus size: 87
37780448 AACTCACTCA
** * *
37780458 GAAAATGGGAAGGGAAAGTAAAGAGAGAAAAGATTGAAAGAAGGATGAATGTGGAATGATGAGAT
1 GAAAATGGGAAGGGAAAGTAAAGAGAGAAAAGAGAGAAAGAAGGATGAATGGGGAATGATGAAAT
37780523 AAGGGAGTGAGGAAATCACTTG
66 AAGGGAGTGAGGAAATCACTTG
*
37780545 GAAAATGGGAAGGGAAAGTAAAGAGAGAAAAGAGAGAAAGATGGATGAATGGGGAATGATGAAAT
1 GAAAATGGGAAGGGAAAGTAAAGAGAGAAAAGAGAGAAAGAAGGATGAATGGGGAATGATGAAAT
*
37780610 GAGGGAGTGAGG
66 AAGGGAGTGAGG
37780622 GATGGTATTT
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
87 71 1.00
ACGTcount: A:0.46, C:0.01, G:0.38, T:0.14
Consensus pattern (87 bp):
GAAAATGGGAAGGGAAAGTAAAGAGAGAAAAGAGAGAAAGAAGGATGAATGGGGAATGATGAAAT
AAGGGAGTGAGGAAATCACTTG
Found at i:37788762 original size:34 final size:34
Alignment explanation
Indices: 37788715--37788828 Score: 102
Period size: 34 Copynumber: 3.4 Consensus size: 34
37788705 TGCACTAATT
* * *
37788715 TGTTATAAGCATATTAATTGCCACTATATTGATC
1 TGTTATAACCATATTAATTGCTACCATATTGATC
* * * * * *
37788749 TGTTATGACCATATTATTTGTTACCACATCGAAC
1 TGTTATAACCATATTAATTGCTACCATATTGATC
* * * * *
37788783 TTTTATGAGCATATTAATTGCTACCATATTTATA
1 TGTTATAACCATATTAATTGCTACCATATTGATC
37788817 TGTTATAACCAT
1 TGTTATAACCAT
37788829 GTCATATAGC
Statistics
Matches: 59, Mismatches: 21, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
34 59 1.00
ACGTcount: A:0.32, C:0.16, G:0.11, T:0.42
Consensus pattern (34 bp):
TGTTATAACCATATTAATTGCTACCATATTGATC
Found at i:37790693 original size:78 final size:81
Alignment explanation
Indices: 37790574--37790754 Score: 228
Period size: 78 Copynumber: 2.3 Consensus size: 81
37790564 ACTCGTTCAA
* * *
37790574 ATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGGA
1 ATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCACACAAATGCCTTC-GGATCTTAACCCGGA
*
37790637 TTTAATAAC-TCGCACC
65 TTTAATAACTTAGCACC
**
37790653 ATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCACACAAATGCCTTCGGATCTTAGTCCGGAT
1 ATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCACACAAATGCCTTCGGATCTTAACCCGGAT
* * *
37790716 TTAGTCACTTAGCACG
66 TTAATAACTTAGCACC
*
37790732 AAGCCTTCGGGACTTAGCCCGGA
1 ATGCCTTCGGGACTTAGCCCGGA
37790755 CATCATTCGA
Statistics
Matches: 88, Mismatches: 10, Indels: 7
0.84 0.10 0.07
Matches are distributed among these distances:
77 3 0.03
78 47 0.53
79 27 0.31
80 11 0.12
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (81 bp):
ATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCACACAAATGCCTTCGGATCTTAACCCGGAT
TTAATAACTTAGCACC
Found at i:37790754 original size:40 final size:40
Alignment explanation
Indices: 37790571--37790754 Score: 200
Period size: 40 Copynumber: 4.7 Consensus size: 40
37790561 GCTACTCGTT
* *
37790571 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTAGCA
* * *
37790611 CAAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTAGCA
* *
37790651 C-CATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCA-CA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACT-AGCA
* *
37790689 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TAGCA
*
37790730 CGAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
37790755 CATCATTCGA
Statistics
Matches: 122, Mismatches: 14, Indels: 16
0.80 0.09 0.11
Matches are distributed among these distances:
38 23 0.19
39 19 0.16
40 69 0.57
41 11 0.09
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTAGCA
Found at i:37794750 original size:46 final size:46
Alignment explanation
Indices: 37794580--37794788 Score: 142
Period size: 46 Copynumber: 4.5 Consensus size: 46
37794570 TGTGTGAGCT
* * * * *
37794580 AGTGTAAGACATGTCTGGGACATGTATCAGCCAC-ATTATGAAAGCC
1 AGTGTAAGACATGTCTAGGACATGTATCAGCCTCGA-GACGTAAGCC
* * * * * * *
37794626 AGTGTAAGACTATGTTTAAGACATGGCATCAGCATTGAGAC-TAGTGCT
1 AGTGTAAGAC-ATGTCTAGGACAT-GTATCAGCCTCGAGACGTA-AGCC
* *
37794674 AGTGTAAGACATGTCTGGGACATGCT-TCGGCCTCGAGACGTAAGCC
1 AGTGTAAGACATGTCTAGGACATG-TATCAGCCTCGAGACGTAAGCC
* * * * *
37794720 AGTGTAAGACATGTTTAGGACATGTATC-GGCTATGAGATGT--GTC
1 AGTGTAAGACATGTCTAGGACATGTATCAGCCT-CGAGACGTAAGCC
37794764 AGTGTAAGACCATGTCTAGGACATG
1 AGTGTAAGA-CATGTCTAGGACATG
37794789 GCATCAGCAC
Statistics
Matches: 126, Mismatches: 28, Indels: 19
0.73 0.16 0.11
Matches are distributed among these distances:
44 11 0.09
45 18 0.14
46 53 0.42
47 23 0.18
48 20 0.16
49 1 0.01
ACGTcount: A:0.29, C:0.17, G:0.27, T:0.26
Consensus pattern (46 bp):
AGTGTAAGACATGTCTAGGACATGTATCAGCCTCGAGACGTAAGCC
Found at i:37800162 original size:31 final size:31
Alignment explanation
Indices: 37800127--37800189 Score: 108
Period size: 31 Copynumber: 2.0 Consensus size: 31
37800117 TTAAAGGCTG
*
37800127 AAAAATACAATAAAAATTTATATTTATACTT
1 AAAAATACAATAAAAAGTTATATTTATACTT
*
37800158 AAAAATACAGTAAAAAGTTATATTTATACTT
1 AAAAATACAATAAAAAGTTATATTTATACTT
37800189 A
1 A
37800190 GTGTTCAAGG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.54, C:0.06, G:0.03, T:0.37
Consensus pattern (31 bp):
AAAAATACAATAAAAAGTTATATTTATACTT
Found at i:37802822 original size:40 final size:40
Alignment explanation
Indices: 37802748--37802842 Score: 124
Period size: 40 Copynumber: 2.4 Consensus size: 40
37802738 AACTATGTTC
37802748 GACACTAAGTGTGCG-ATTCAAATAGCTTCGGCTATAAAT-A
1 GACACTAAGTGTGCGAATTCAAATAGCTTCGGCTAT--ATGA
** *
37802788 G-CACTAAGTGTGCGAATTGGAATAGCTTTGGCTATATGA
1 GACACTAAGTGTGCGAATTCAAATAGCTTCGGCTATATGA
37802827 GACACTAAGTGTGCGA
1 GACACTAAGTGTGCGA
37802843 TACCGAGATA
Statistics
Matches: 49, Mismatches: 3, Indels: 6
0.84 0.05 0.10
Matches are distributed among these distances:
38 2 0.04
39 15 0.31
40 32 0.65
ACGTcount: A:0.32, C:0.16, G:0.25, T:0.27
Consensus pattern (40 bp):
GACACTAAGTGTGCGAATTCAAATAGCTTCGGCTATATGA
Found at i:37820693 original size:48 final size:49
Alignment explanation
Indices: 37820622--37820885 Score: 299
Period size: 48 Copynumber: 5.5 Consensus size: 49
37820612 TAAAGTACCA
* * * * *
37820622 ATGCCATGTCCCCGAA-ATGGTCTTACA-TGAATC-CACATATCATTGTCG
1 ATGCCATGT-CCCAAACATGGTCTTACACTG-AGCACATATATCATCGCCG
*
37820670 ATGCCATGTCCCAAACATGGTCTTACACT-AGCACATATATCATCACCG
1 ATGCCATGTCCCAAACATGGTCTTACACTGAGCACATATATCATCGCCG
*
37820718 ATGCCTTGTCCCAAACATGGTCTTACACT-AGCACATATATCATCGCCG
1 ATGCCATGTCCCAAACATGGTCTTACACTGAGCACATATATCATCGCCG
* * **
37820766 ATGCCATGTCCTAGACATGGTCTTACACTG-GCACATATATCATCGTAG
1 ATGCCATGTCCCAAACATGGTCTTACACTGAGCACATATATCATCGCCG
* * * * *
37820814 ATGCCATGTCCCAGACATGGTCTTACACTGA-AACATACATTATTGCCG
1 ATGCCATGTCCCAAACATGGTCTTACACTGAGCACATATATCATCGCCG
* *
37820862 TTGCCATGTCCCAGACATGGTCTT
1 ATGCCATGTCCCAAACATGGTCTT
37820886 GCACGAAATC
Statistics
Matches: 190, Mismatches: 21, Indels: 10
0.86 0.10 0.05
Matches are distributed among these distances:
47 7 0.04
48 182 0.96
49 1 0.01
ACGTcount: A:0.27, C:0.28, G:0.16, T:0.28
Consensus pattern (49 bp):
ATGCCATGTCCCAAACATGGTCTTACACTGAGCACATATATCATCGCCG
Found at i:37822964 original size:42 final size:42
Alignment explanation
Indices: 37822917--37823043 Score: 134
Period size: 43 Copynumber: 3.0 Consensus size: 42
37822907 TAGGATTTCT
*
37822917 GATATGTGTTCTTGTGTAAGACCACGTCT-GGACATTGGCATC
1 GATATGTGTTC-TATGTAAGACCACGTCTAGGACATTGGCATC
* * * *
37822959 GATATGTGTTCTCATGTAAGACC-CTGTCTGGGATAGTGGCATT
1 GATATGTGTTCT-ATGTAAGACCAC-GTCTAGGACATTGGCATC
*
37823002 GATATGTGATTAC-ATGTAAGACCACGTCTAGGACGTTGGCAT
1 GATATGTG-TT-CTATGTAAGACCACGTCTAGGACATTGGCAT
37823044 TGTACGATAT
Statistics
Matches: 71, Mismatches: 8, Indels: 11
0.79 0.09 0.12
Matches are distributed among these distances:
41 2 0.03
42 24 0.34
43 41 0.58
44 3 0.04
45 1 0.01
ACGTcount: A:0.24, C:0.17, G:0.27, T:0.32
Consensus pattern (42 bp):
GATATGTGTTCTATGTAAGACCACGTCTAGGACATTGGCATC
Found at i:37828116 original size:10 final size:10
Alignment explanation
Indices: 37828101--37828127 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
37828091 TATTTACTAA
37828101 ATAATGACAT
1 ATAATGACAT
37828111 ATAATGACAT
1 ATAATGACAT
37828121 ATAATGA
1 ATAATGA
37828128 TTCAATTAGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.52, C:0.07, G:0.11, T:0.30
Consensus pattern (10 bp):
ATAATGACAT
Found at i:37835398 original size:9 final size:9
Alignment explanation
Indices: 37835384--37835416 Score: 57
Period size: 9 Copynumber: 3.7 Consensus size: 9
37835374 TTAATTCATT
*
37835384 AAAATGCCC
1 AAAATGACC
37835393 AAAATGACC
1 AAAATGACC
37835402 AAAATGACC
1 AAAATGACC
37835411 AAAATG
1 AAAATG
37835417 CCCTTATGCC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
9 23 1.00
ACGTcount: A:0.55, C:0.21, G:0.12, T:0.12
Consensus pattern (9 bp):
AAAATGACC
Found at i:37852643 original size:48 final size:48
Alignment explanation
Indices: 37852588--37852811 Score: 322
Period size: 48 Copynumber: 4.7 Consensus size: 48
37852578 ACATATCATT
* *
37852588 GCCGATGCTATGTCCAAGACATGGTCTTACACTGGCAAATATATAATC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCAAATATATAATC
* * *
37852636 GCTGATGCCATGTCCAAGACATGGTCTTACACTGGCAAATATATCATC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCAAATATATAATC
* *
37852684 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCACATATATAATC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCAAATATATAATC
** * * * **
37852732 GCTAATGCCATATCCCAGACATGGTCTTACACTGGCACATACATTTTC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCAAATATATAATC
37852780 GCCGATGCCATGTCCCAGACATGGTCTTACAC
1 GCCGATGCCATGTCCCAGACATGGTCTTACAC
37852812 GGGATCTCAT
Statistics
Matches: 158, Mismatches: 18, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
48 158 1.00
ACGTcount: A:0.28, C:0.28, G:0.18, T:0.26
Consensus pattern (48 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCAAATATATAATC
Found at i:37852708 original size:96 final size:96
Alignment explanation
Indices: 37852580--37852811 Score: 356
Period size: 96 Copynumber: 2.4 Consensus size: 96
37852570 ATGAAACCAC
* * * * *
37852580 ATATCATTGCCGATGCTATGTCCAAGACATGGTCTTACACTGGCAAATATATAATCGCTGATGCC
1 ATATCATCGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCAAATATATAATCGCTAATGCC
*
37852645 ATGTCCAAGACATGGTCTTACACTGGCAAAT
66 ATATCCAAGACATGGTCTTACACTGGCAAAT
*
37852676 ATATCATCGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCACATATATAATCGCTAATGCC
1 ATATCATCGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCAAATATATAATCGCTAATGCC
* *
37852741 ATATCCCAGACATGGTCTTACACTGGCACAT
66 ATATCCAAGACATGGTCTTACACTGGCAAAT
* **
37852772 ACATTTTCGCCGATGCCATGTCCCAGACATGGTCTTACAC
1 ATATCATCGCCGATGCCATGTCCCAGACATGGTCTTACAC
37852812 GGGATCTCAT
Statistics
Matches: 124, Mismatches: 12, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
96 124 1.00
ACGTcount: A:0.28, C:0.27, G:0.17, T:0.27
Consensus pattern (96 bp):
ATATCATCGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCAAATATATAATCGCTAATGCC
ATATCCAAGACATGGTCTTACACTGGCAAAT
Found at i:37859555 original size:93 final size:93
Alignment explanation
Indices: 37859442--37859613 Score: 283
Period size: 93 Copynumber: 1.8 Consensus size: 93
37859432 GCCCATAAGT
* *
37859442 GAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCATCCATAAGTGAAATCAGACTCAACTCAA
1 GAACTCGGACTCAACTCAATGAGCTCGGACATTCGCATCCATAAGTGAAATCAGACTCAACTCAA
37859507 CGAGCTT-GGATGCCTAGTTACATCTCTC
66 CGAG-TTCGGATGCCTAGTTACATCTCTC
* * *
37859535 GAACTCGGACTCAACTCAATGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAATGAGCTCGGACATTCGCATCCATAAGTGAAATCAGACTCAACTCAA
37859600 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
37859614 CAAACATCCT
Statistics
Matches: 73, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
92 2 0.03
93 71 0.97
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAATGAGCTCGGACATTCGCATCCATAAGTGAAATCAGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCTC
Found at i:37859592 original size:46 final size:46
Alignment explanation
Indices: 37859434--37859609 Score: 171
Period size: 46 Copynumber: 3.8 Consensus size: 46
37859424 TGTAACCCGC
* * * *
37859434 CCATAAGTGAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* * *
37859480 CCATAAGTGAAATCAGACTCAACTCAACGAGCTT-GG--ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAG-TTCGGACATTCGC-A--T
* *** *
37859526 ACATCTCTCGAACTCGGACTCAACTCAATGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
37859573 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
37859610 TGCCCAAACA
Statistics
Matches: 102, Mismatches: 19, Indels: 18
0.73 0.14 0.13
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
46 65 0.64
47 28 0.27
49 4 0.04
50 1 0.01
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.23
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:37862040 original size:30 final size:30
Alignment explanation
Indices: 37861996--37862084 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
37861986 CAAAGATAAC
37861996 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
37862025 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
37862055 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
37862085 TGATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:37862044 original size:15 final size:15
Alignment explanation
Indices: 37861996--37862075 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
37861986 CAAAGATAAC
*
37861996 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
37862010 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
37862025 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
37862040 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
37862055 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
37862070 AAGAAA
1 AAGAAA
37862076 CCCAAGATAT
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:37862084 original size:15 final size:15
Alignment explanation
Indices: 37862007--37862084 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
37861997 AGAAAACCGA
37862007 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
37862022 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
37862036 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
37862051 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
37862067 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
37862082 ATA
1 ATA
37862085 TGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:37862268 original size:14 final size:13
Alignment explanation
Indices: 37862244--37862280 Score: 56
Period size: 14 Copynumber: 2.8 Consensus size: 13
37862234 TATATCAGAT
*
37862244 GAAGCATCAAGTA
1 GAAGAATCAAGTA
37862257 GAAGAAATCAAGTA
1 GAAG-AATCAAGTA
37862271 GAAGAATCAA
1 GAAGAATCAA
37862281 AATATAATAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 10 0.45
14 12 0.55
ACGTcount: A:0.54, C:0.11, G:0.22, T:0.14
Consensus pattern (13 bp):
GAAGAATCAAGTA
Found at i:37865155 original size:93 final size:93
Alignment explanation
Indices: 37865027--37865198 Score: 283
Period size: 93 Copynumber: 1.8 Consensus size: 93
37865017 GCCCATAAGT
* * *
37865027 GAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCATCCATAAGTGAACTCAGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
37865092 CGAGCTT-GGATGCCTAGTTACATCTCTC
66 CGAG-TTCGGATGCCTAGTTACATCTCTC
* *
37865120 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
37865185 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
37865199 CAAACATCCT
Statistics
Matches: 73, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
92 2 0.03
93 71 0.97
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCTC
Found at i:37865194 original size:46 final size:46
Alignment explanation
Indices: 37865019--37865194 Score: 189
Period size: 46 Copynumber: 3.8 Consensus size: 46
37865009 TGTAACCCGC
* * * *
37865019 CCATAAGTGAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
37865065 CCATAAGTGAACTCAGACTCAACTCAACGAGCTT-GG--ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAG-TTCGGACATTCGC-A--T
* ***
37865111 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
37865158 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
37865195 TGCCCAAACA
Statistics
Matches: 106, Mismatches: 15, Indels: 18
0.76 0.11 0.13
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
46 67 0.63
47 30 0.28
49 4 0.04
50 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:37865213 original size:46 final size:46
Alignment explanation
Indices: 37865070--37865213 Score: 127
Period size: 46 Copynumber: 3.1 Consensus size: 46
37865060 CGCATCCATA
* *
37865070 AGTGAACTCAGACTCAACTCAACGAGCTT-GGATGCCTAGTTACATCTCT
1 AGTGAACTCGGACTCAACTCAACGAG-TTCGGATGCCCA--TACATC-CT
* * * * *
37865119 --CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT--A
1 AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCCCATACATCCT
*
37865163 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAACATCCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCATACATCCT
37865209 AGTGA
1 AGTGA
37865214 CATGTCACTT
Statistics
Matches: 75, Mismatches: 13, Indels: 17
0.71 0.12 0.16
Matches are distributed among these distances:
44 8 0.11
46 35 0.47
47 28 0.37
49 4 0.05
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.22
Consensus pattern (46 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCATACATCCT
Found at i:37870422 original size:42 final size:43
Alignment explanation
Indices: 37870375--37870480 Score: 133
Period size: 43 Copynumber: 2.5 Consensus size: 43
37870365 GGGTTAGTTG
*
37870375 AGATTTCGTGTAGGACCATATCTGGGATA-TGACATCAATATA
1 AGATTTCGTGTAAGACCATATCTGGGATATTGACATCAATATA
* * * * *
37870417 AGATTTCGTGTAAGACCATAGCTGGGCTATTGGCATCGATATG
1 AGATTTCGTGTAAGACCATATCTGGGATATTGACATCAATATA
**
37870460 AGATCCCGTGTAAGACCATAT
1 AGATTTCGTGTAAGACCATAT
37870481 TTAGGATGTG
Statistics
Matches: 54, Mismatches: 9, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
42 26 0.48
43 28 0.52
ACGTcount: A:0.30, C:0.17, G:0.24, T:0.29
Consensus pattern (43 bp):
AGATTTCGTGTAAGACCATATCTGGGATATTGACATCAATATA
Found at i:37878202 original size:68 final size:68
Alignment explanation
Indices: 37878083--37878243 Score: 277
Period size: 68 Copynumber: 2.4 Consensus size: 68
37878073 TTGCTTTTGG
* * * *
37878083 ACTCAAAGACCCCTACGCTGTCTTTGATATAAGTGTAGTGCGGATGCTCACACTCTCCCACACTC
1 ACTCATAGAGCCCTACGCTGTCTCTGATATAAGTGTAGCGCGGATGCTCACACTCTCCCACACTC
37878148 TCA
66 TCA
*
37878151 ACTTATAGAGCCCTACGCTGTCTCTGATATAAGTGTAGCGCGGATGCTCACACTCTCCCACACTC
1 ACTCATAGAGCCCTACGCTGTCTCTGATATAAGTGTAGCGCGGATGCTCACACTCTCCCACACTC
37878216 TCA
66 TCA
37878219 ACTCATAGAGCCCTACGCTGTCTCT
1 ACTCATAGAGCCCTACGCTGTCTCT
37878244 ATTGAATAGA
Statistics
Matches: 87, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
68 87 1.00
ACGTcount: A:0.24, C:0.33, G:0.17, T:0.27
Consensus pattern (68 bp):
ACTCATAGAGCCCTACGCTGTCTCTGATATAAGTGTAGCGCGGATGCTCACACTCTCCCACACTC
TCA
Found at i:37879032 original size:33 final size:34
Alignment explanation
Indices: 37878978--37879101 Score: 120
Period size: 31 Copynumber: 3.8 Consensus size: 34
37878968 GAATTATAAA
37878978 ACCCATATACATATATATTATATA-A-AA-CAAG
1 ACCCATATACATATATATTATATATATAATCAAG
*
37879009 ACCCATATATGCATGTATATTATATATATAATCAAG
1 ACCCATATA--CATATATATTATATATATAATCAAG
** *
37879045 ACCCACGT--ATATATATTATATATATAA-CAAA
1 ACCCATATACATATATATTATATATATAATCAAG
* *
37879076 ACCCA-AGA-ATATATATTGTATATATA
1 ACCCATATACATATATATTATATATATA
37879102 CACATACCTT
Statistics
Matches: 79, Mismatches: 8, Indels: 12
0.80 0.08 0.12
Matches are distributed among these distances:
31 34 0.43
32 18 0.23
33 14 0.18
34 1 0.01
35 2 0.03
36 10 0.13
ACGTcount: A:0.47, C:0.15, G:0.06, T:0.33
Consensus pattern (34 bp):
ACCCATATACATATATATTATATATATAATCAAG
Found at i:37879069 original size:36 final size:36
Alignment explanation
Indices: 37878988--37879070 Score: 89
Period size: 36 Copynumber: 2.2 Consensus size: 36
37878978 ACCCATATAC
*
37878988 ATATATATTATATAAAACAAGACCCATATATGCATGT
1 ATATATA-TATATAAAACAAGACCCATATATACATGT
* *
37879025 ATAT-TATATATATAATCAAGACCCACGTATATATAT-T
1 ATATATATATATA-AAACAAGACCCA--TATATACATGT
37879062 ATATATATA
1 ATATATATA
37879071 ACAAAACCCA
Statistics
Matches: 39, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
35 6 0.15
36 13 0.33
37 9 0.23
38 11 0.28
ACGTcount: A:0.46, C:0.12, G:0.06, T:0.36
Consensus pattern (36 bp):
ATATATATATATAAAACAAGACCCATATATACATGT
Found at i:37885368 original size:19 final size:20
Alignment explanation
Indices: 37885327--37885369 Score: 52
Period size: 19 Copynumber: 2.2 Consensus size: 20
37885317 TTTTATAAAG
* *
37885327 TTTGTAAAATAGATGGTACT
1 TTTGTAAAATAGATGGAAAT
*
37885347 TTTGTGAAATA-ATGGAAAT
1 TTTGTAAAATAGATGGAAAT
37885366 TTTG
1 TTTG
37885370 GGTTGTTGTG
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
19 10 0.50
20 10 0.50
ACGTcount: A:0.35, C:0.02, G:0.21, T:0.42
Consensus pattern (20 bp):
TTTGTAAAATAGATGGAAAT
Found at i:37886042 original size:94 final size:94
Alignment explanation
Indices: 37885833--37886033 Score: 228
Period size: 94 Copynumber: 2.1 Consensus size: 94
37885823 TGATATGTGT
** * *
37885833 GCTAGTGTAAGACATGTTTGGGACATGCATCGGCCACATT---ACGAGAGCCAGTCTAAGACATG
1 GCTAGTGTAAGACATGACTGGGACATGTATCGG---CATTGAGACAAGAGCCAGTCTAAGACATG
* * * *
37885895 TTTGGGACATGCATAGGCCTCGAGAGATGCAA
63 TCTGGGACATGCATAGACCTCAAGAGATACAA
* * * *
37885927 GTTAGTGTAAGACATGACTGGGACATGTATCGGCATTGAGACAAGAGCTAGTGTAAGATATGTCT
1 GCTAGTGTAAGACATGACTGGGACATGTATCGGCATTGAGACAAGAGCCAGTCTAAGACATGTCT
* *
37885992 GGGACATGCATTGACCTCAAGATATACAA
66 GGGACATGCATAGACCTCAAGAGATACAA
37886021 GCTAGTGTAAGAC
1 GCTAGTGTAAGAC
37886034 CTATCTGGGT
Statistics
Matches: 89, Mismatches: 15, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
91 4 0.04
94 85 0.96
ACGTcount: A:0.31, C:0.17, G:0.28, T:0.24
Consensus pattern (94 bp):
GCTAGTGTAAGACATGACTGGGACATGTATCGGCATTGAGACAAGAGCCAGTCTAAGACATGTCT
GGGACATGCATAGACCTCAAGAGATACAA
Found at i:37889552 original size:27 final size:27
Alignment explanation
Indices: 37889530--37889796 Score: 381
Period size: 27 Copynumber: 9.9 Consensus size: 27
37889520 AGTACCACCA
* *
37889530 ATTTATAGAATTACCGTTTTACCCTTG
1 ATTTACAGAATTACCGTTTTACCCTCG
*
37889557 ATTTACAGAATTACTGTTTTACCCTCG
1 ATTTACAGAATTACCGTTTTACCCTCG
37889584 ATTTACAGAATTACCGTTTTACCCTCG
1 ATTTACAGAATTACCGTTTTACCCTCG
* *
37889611 ATTTACAGAATTACTGTTTTACCCTTG
1 ATTTACAGAATTACCGTTTTACCCTCG
* *
37889638 ATTTACAGAATTACTGTTTTACCCTCA
1 ATTTACAGAATTACCGTTTTACCCTCG
* ** *
37889665 ATTTACAAAATTACTATTTTACCCTTG
1 ATTTACAGAATTACCGTTTTACCCTCG
37889692 ATTTACAGAATTACCGTTTTACCCTCG
1 ATTTACAGAATTACCGTTTTACCCTCG
**
37889719 ATTTACAGAATTACTATTTTACCCTCG
1 ATTTACAGAATTACCGTTTTACCCTCG
*
37889746 ATTTACAAAATTACCGTTTTACCCTCG
1 ATTTACAGAATTACCGTTTTACCCTCG
* * *
37889773 ATTTATAAAATTACCATTTTACCC
1 ATTTACAGAATTACCGTTTTACCC
37889797 CTAGGGTGTT
Statistics
Matches: 217, Mismatches: 23, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 217 1.00
ACGTcount: A:0.29, C:0.22, G:0.08, T:0.41
Consensus pattern (27 bp):
ATTTACAGAATTACCGTTTTACCCTCG
Found at i:37889615 original size:81 final size:81
Alignment explanation
Indices: 37889530--37889796 Score: 426
Period size: 81 Copynumber: 3.3 Consensus size: 81
37889520 AGTACCACCA
* *
37889530 ATTTATAGAATTACCGTTTTACCCTTGATTTACAGAATTACTGTTTTACCCTCGATTTACAGAAT
1 ATTTACAGAATTACCGTTTTACCCTTGATTTACAGAATTACTGTTTTACCCTCGATTTACAAAAT
37889595 TACCGTTTTACCCTCG
66 TACCGTTTTACCCTCG
* *
37889611 ATTTACAGAATTACTGTTTTACCCTTGATTTACAGAATTACTGTTTTACCCTCAATTTACAAAAT
1 ATTTACAGAATTACCGTTTTACCCTTGATTTACAGAATTACTGTTTTACCCTCGATTTACAAAAT
** *
37889676 TACTATTTTACCCTTG
66 TACCGTTTTACCCTCG
* *
37889692 ATTTACAGAATTACCGTTTTACCCTCGATTTACAGAATTACTATTTTACCCTCGATTTACAAAAT
1 ATTTACAGAATTACCGTTTTACCCTTGATTTACAGAATTACTGTTTTACCCTCGATTTACAAAAT
37889757 TACCGTTTTACCCTCG
66 TACCGTTTTACCCTCG
* * *
37889773 ATTTATAAAATTACCATTTTACCC
1 ATTTACAGAATTACCGTTTTACCC
37889797 CTAGGGTGTT
Statistics
Matches: 169, Mismatches: 17, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
81 169 1.00
ACGTcount: A:0.29, C:0.22, G:0.08, T:0.41
Consensus pattern (81 bp):
ATTTACAGAATTACCGTTTTACCCTTGATTTACAGAATTACTGTTTTACCCTCGATTTACAAAAT
TACCGTTTTACCCTCG
Found at i:37890076 original size:27 final size:26
Alignment explanation
Indices: 37890032--37890083 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
37890022 CTCGCTGCAA
*
37890032 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
37890059 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
37890084 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:37890123 original size:2 final size:2
Alignment explanation
Indices: 37890116--37890141 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
37890106 GCTTCGCCAC
37890116 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
37890142 CTGTTCTAGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:37893930 original size:57 final size:58
Alignment explanation
Indices: 37893847--37893966 Score: 154
Period size: 57 Copynumber: 2.1 Consensus size: 58
37893837 TTTTTCAGGG
* * * * *
37893847 CATTTTCATTTTCATTTTGGAGAAAACCACATTCATTTCCAAATGATTT-C-ATTTCTT
1 CATTTTCATTTTAATTCTGGAAAAAACCACAATCATTTCCAAATG-TTTCCTATTTCTC
* *
37893904 CATTTTCATTTTAATTCTGGAAAAAACCATAATCATTTCTAAATGTTTCCTATTTCTC
1 CATTTTCATTTTAATTCTGGAAAAAACCACAATCATTTCCAAATGTTTCCTATTTCTC
37893962 CATTT
1 CATTT
37893967 CACCATTTCT
Statistics
Matches: 54, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
56 3 0.06
57 40 0.74
58 11 0.20
ACGTcount: A:0.29, C:0.19, G:0.06, T:0.46
Consensus pattern (58 bp):
CATTTTCATTTTAATTCTGGAAAAAACCACAATCATTTCCAAATGTTTCCTATTTCTC
Found at i:37898223 original size:26 final size:24
Alignment explanation
Indices: 37898193--37898364 Score: 99
Period size: 23 Copynumber: 7.3 Consensus size: 24
37898183 GAACTCACCA
37898193 CAGCTCATAAGAGCTTACTAATATAT
1 CAGCTCATAAGAGCTTACT-AT-TAT
* * *
37898219 CAGCTCGTAAGAGCTTACTGTTGT
1 CAGCTCATAAGAGCTTACTATTAT
* *
37898243 CAGCTCATTAGAGCTTACTGTT-T
1 CAGCTCATAAGAGCTTACTATTAT
* ** * * *
37898266 CAACTTGTATGAGTTTACT-GT-T
1 CAGCTCATAAGAGCTTACTATTAT
*
37898288 CAGCTCA-ATAGAGCTTACT-GT-T
1 CAGCTCATA-AGAGCTTACTATTAT
**
37898310 CAGCTCGAT-AGAGCTTACCGTT-T
1 CAGCTC-ATAAGAGCTTACTATTAT
* *
37898333 CAGCTCATTAGAGCTTACTGTTCAT
1 CAGCTCATAAGAGCTTACTATT-AT
37898358 CAGCTCA
1 CAGCTCA
37898365 GGAGGAACTT
Statistics
Matches: 119, Mismatches: 20, Indels: 15
0.77 0.13 0.10
Matches are distributed among these distances:
21 1 0.01
22 34 0.29
23 35 0.29
24 22 0.18
25 9 0.08
26 18 0.15
ACGTcount: A:0.26, C:0.22, G:0.18, T:0.34
Consensus pattern (24 bp):
CAGCTCATAAGAGCTTACTATTAT
Found at i:37898300 original size:45 final size:46
Alignment explanation
Indices: 37898193--37898354 Score: 170
Period size: 45 Copynumber: 3.5 Consensus size: 46
37898183 GAACTCACCA
* * *
37898193 CAGCTCATAAGAGCTTACTAATATATCAGCTCG-TAAGAGCTTACTGTTGT
1 CAGCTCATTAGAGCTTACT-GT-T-TCAACTCGAT-AGAGCTTACTGTT-T
* *
37898243 CAGCTCATTAGAGCTTACTGTTTCAACTTG-TATGAGTTTACTG-TT
1 CAGCTCATTAGAGCTTACTGTTTCAACTCGATA-GAGCTTACTGTTT
* * *
37898288 CAGCTCAATAGAGCTTACTG-TTCAGCTCGATAGAGCTTACCGTTT
1 CAGCTCATTAGAGCTTACTGTTTCAACTCGATAGAGCTTACTGTTT
37898333 CAGCTCATTAGAGCTTACTGTT
1 CAGCTCATTAGAGCTTACTGTT
37898355 CATCAGCTCA
Statistics
Matches: 97, Mismatches: 11, Indels: 12
0.81 0.09 0.10
Matches are distributed among these distances:
44 15 0.15
45 43 0.44
46 3 0.03
47 16 0.16
48 1 0.01
49 1 0.01
50 18 0.19
ACGTcount: A:0.25, C:0.21, G:0.19, T:0.35
Consensus pattern (46 bp):
CAGCTCATTAGAGCTTACTGTTTCAACTCGATAGAGCTTACTGTTT
Found at i:37898305 original size:22 final size:23
Alignment explanation
Indices: 37898228--37898364 Score: 145
Period size: 22 Copynumber: 5.9 Consensus size: 23
37898218 TCAGCTCGTA
*
37898228 AGAGCTTACTGTTGTCAGCTCATT
1 AGAGCTTACTGTT-TCAGCTCAAT
* **
37898252 AGAGCTTACTGTTTCAACT-TGT
1 AGAGCTTACTGTTTCAGCTCAAT
*
37898274 ATGAGTTTACTG-TTCAGCTCAAT
1 A-GAGCTTACTGTTTCAGCTCAAT
*
37898297 AGAGCTTACTG-TTCAGCTCGAT
1 AGAGCTTACTGTTTCAGCTCAAT
* *
37898319 AGAGCTTACCGTTTCAGCTCATT
1 AGAGCTTACTGTTTCAGCTCAAT
37898342 AGAGCTTACTGTTCATCAGCTCA
1 AGAGCTTACTGTT--TCAGCTCA
37898365 GGAGGAACTT
Statistics
Matches: 95, Mismatches: 13, Indels: 9
0.81 0.11 0.08
Matches are distributed among these distances:
22 37 0.39
23 37 0.39
24 13 0.14
25 8 0.08
ACGTcount: A:0.23, C:0.22, G:0.19, T:0.36
Consensus pattern (23 bp):
AGAGCTTACTGTTTCAGCTCAAT
Found at i:37898351 original size:67 final size:69
Alignment explanation
Indices: 37898228--37898356 Score: 169
Period size: 67 Copynumber: 1.9 Consensus size: 69
37898218 TCAGCTCGTA
* *
37898228 AGAGCTTACTGTTGTCAGCTCATTAGAGCTTACTGTTTCAACTTGTATGAGTTTACTGTTCAGCT
1 AGAGCTTACTGTTGTCAGCTCATTAGAGCTTACCGTTTCAACTTGTATGAGCTTACTGTTCAGCT
37898293 CAAT
66 CAAT
*
37898297 AGAGCTTACTG-T-TCAGCTCGA-TAGAGCTTACCGTTTCAGCTCAT-TA-GAGCTTACTGTTCA
1 AGAGCTTACTGTTGTCAGCTC-ATTAGAGCTTACCGTTTCAACT--TGTATGAGCTTACTGTTCA
37898357 TCAGCTCAGG
Statistics
Matches: 54, Mismatches: 3, Indels: 8
0.83 0.05 0.12
Matches are distributed among these distances:
67 38 0.70
68 4 0.07
69 12 0.22
ACGTcount: A:0.23, C:0.21, G:0.19, T:0.36
Consensus pattern (69 bp):
AGAGCTTACTGTTGTCAGCTCATTAGAGCTTACCGTTTCAACTTGTATGAGCTTACTGTTCAGCT
CAAT
Found at i:37898355 original size:45 final size:44
Alignment explanation
Indices: 37898218--37898356 Score: 181
Period size: 45 Copynumber: 3.1 Consensus size: 44
37898208 TACTAATATA
37898218 TCAGCTCGTAAGAGCTTACTGTTGTCAGCTCATTAGAGCTTACTGTT
1 TCAGCTCGT-AGAGCTTACTGTT-TCAGCTCATTAGAGCTTACTG-T
* * * *
37898265 TCAACTTGTATGAGTTTACTG-TTCAGCTCAATAGAGCTTACTGT
1 TCAGCTCGTA-GAGCTTACTGTTTCAGCTCATTAGAGCTTACTGT
*
37898309 TCAGCTCGATAGAGCTTACCGTTTCAGCTCATTAGAGCTTACTGT
1 TCAGCTCG-TAGAGCTTACTGTTTCAGCTCATTAGAGCTTACTGT
37898354 TCA
1 TCA
37898357 TCAGCTCAGG
Statistics
Matches: 80, Mismatches: 9, Indels: 8
0.82 0.09 0.08
Matches are distributed among these distances:
44 15 0.19
45 47 0.59
46 2 0.03
47 16 0.20
ACGTcount: A:0.23, C:0.22, G:0.19, T:0.36
Consensus pattern (44 bp):
TCAGCTCGTAGAGCTTACTGTTTCAGCTCATTAGAGCTTACTGT
Found at i:37900779 original size:2 final size:2
Alignment explanation
Indices: 37900772--37900814 Score: 86
Period size: 2 Copynumber: 21.5 Consensus size: 2
37900762 GTCAAATACC
37900772 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
37900814 T
1 T
37900815 TAAATTAGGT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:37905236 original size:42 final size:42
Alignment explanation
Indices: 37905178--37905283 Score: 151
Period size: 42 Copynumber: 2.5 Consensus size: 42
37905168 GTACAGGGGG
37905178 CACACAGCC-AGAACACATGCCCATGGGAAAGACCGTGTGTCA
1 CACACAGCCTAG-ACACATGCCCATGGGAAAGACCGTGTGTCA
* ** *
37905220 CACACGGCCTAGACACATGCCCATGGGGTAGATCGTGTGTCA
1 CACACAGCCTAGACACATGCCCATGGGAAAGACCGTGTGTCA
*
37905262 CACACAGCCTAGACACACGCCC
1 CACACAGCCTAGACACATGCCC
37905284 GTGTGTCTAC
Statistics
Matches: 57, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
42 55 0.96
43 2 0.04
ACGTcount: A:0.29, C:0.34, G:0.24, T:0.13
Consensus pattern (42 bp):
CACACAGCCTAGACACATGCCCATGGGAAAGACCGTGTGTCA
Found at i:37906113 original size:13 final size:13
Alignment explanation
Indices: 37906097--37906122 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
37906087 GGAATGATTT
37906097 TTTGAAAATTTTG
1 TTTGAAAATTTTG
37906110 TTTGAAAATTTTG
1 TTTGAAAATTTTG
37906123 ACATTTGAGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.00, G:0.15, T:0.54
Consensus pattern (13 bp):
TTTGAAAATTTTG
Found at i:37906369 original size:12 final size:13
Alignment explanation
Indices: 37906341--37906367 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
37906331 TAATTAAATG
37906341 AATTAAAAAGCCA
1 AATTAAAAAGCCA
37906354 AATTAAAAAGCCA
1 AATTAAAAAGCCA
37906367 A
1 A
37906368 TTTTTGTCCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.63, C:0.15, G:0.07, T:0.15
Consensus pattern (13 bp):
AATTAAAAAGCCA
Found at i:37907268 original size:42 final size:42
Alignment explanation
Indices: 37907221--37907327 Score: 114
Period size: 43 Copynumber: 2.6 Consensus size: 42
37907211 AGATTATGTT
* *
37907221 TAAGACCATATCTAGGATATGGCATCGATATGAGACTT-CATG
1 TAAGACCATATCTGGGATATGGCATCGATACGAGA-TTACATG
* * *
37907263 TAAGACCATAGCTGGGCTATTGCCATCGATACGAGATTACATG
1 TAAGACCATATCTGGGATA-TGGCATCGATACGAGATTACATG
*
37907306 T---ACCATATATGGGATATGGCAT
1 TAAGACCATATCTGGGATATGGCAT
37907328 TGGTACGGTA
Statistics
Matches: 54, Mismatches: 9, Indels: 7
0.77 0.13 0.10
Matches are distributed among these distances:
39 5 0.09
40 12 0.22
42 18 0.33
43 19 0.35
ACGTcount: A:0.32, C:0.18, G:0.22, T:0.28
Consensus pattern (42 bp):
TAAGACCATATCTGGGATATGGCATCGATACGAGATTACATG
Found at i:37907808 original size:130 final size:130
Alignment explanation
Indices: 37907575--37907966 Score: 784
Period size: 130 Copynumber: 3.0 Consensus size: 130
37907565 TCATGATAAA
37907575 TTCGGTTGAAGATCATGTGATTAGCTTTTGGGCCAAATTGAGTTGTGAAATAGCGTGTTATATTC
1 TTCGGTTGAAGATCATGTGATTAGCTTTTGGGCCAAATTGAGTTGTGAAATAGCGTGTTATATTC
37907640 ACTTAAATTACGATTTATCATATATGAGAATAAGGAAAGATTGGCATAATTGCCTATTAAAATGG
66 ACTTAAATTACGATTTATCATATATGAGAATAAGGAAAGATTGGCATAATTGCCTATTAAAATGG
37907705 TTCGGTTGAAGATCATGTGATTAGCTTTTGGGCCAAATTGAGTTGTGAAATAGCGTGTTATATTC
1 TTCGGTTGAAGATCATGTGATTAGCTTTTGGGCCAAATTGAGTTGTGAAATAGCGTGTTATATTC
37907770 ACTTAAATTACGATTTATCATATATGAGAATAAGGAAAGATTGGCATAATTGCCTATTAAAATGG
66 ACTTAAATTACGATTTATCATATATGAGAATAAGGAAAGATTGGCATAATTGCCTATTAAAATGG
37907835 TTCGGTTGAAGATCATGTGATTAGCTTTTGGGCCAAATTGAGTTGTGAAATAGCGTGTTATATTC
1 TTCGGTTGAAGATCATGTGATTAGCTTTTGGGCCAAATTGAGTTGTGAAATAGCGTGTTATATTC
37907900 ACTTAAATTACGATTTATCATATATGAGAATAAGGAAAGATTGGCATAATTGCCTATTAAAATGG
66 ACTTAAATTACGATTTATCATATATGAGAATAAGGAAAGATTGGCATAATTGCCTATTAAAATGG
37907965 TT
1 TT
37907967 ATGAAAGTAC
Statistics
Matches: 262, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
130 262 1.00
ACGTcount: A:0.33, C:0.10, G:0.21, T:0.36
Consensus pattern (130 bp):
TTCGGTTGAAGATCATGTGATTAGCTTTTGGGCCAAATTGAGTTGTGAAATAGCGTGTTATATTC
ACTTAAATTACGATTTATCATATATGAGAATAAGGAAAGATTGGCATAATTGCCTATTAAAATGG
Found at i:37914804 original size:13 final size:14
Alignment explanation
Indices: 37914754--37914804 Score: 54
Period size: 13 Copynumber: 3.9 Consensus size: 14
37914744 ATCTTCCTGA
*
37914754 TTAGTTTATTTATT
1 TTAGTTCATTTATT
37914768 TTAG-TCATTT-TT
1 TTAGTTCATTTATT
**
37914780 TTTCTTCATTTATT
1 TTAGTTCATTTATT
37914794 TTAGTTC-TTTA
1 TTAGTTCATTTA
37914805 AATTCCCTTA
Statistics
Matches: 30, Mismatches: 5, Indels: 5
0.75 0.12 0.12
Matches are distributed among these distances:
12 4 0.13
13 15 0.50
14 11 0.37
ACGTcount: A:0.18, C:0.08, G:0.06, T:0.69
Consensus pattern (14 bp):
TTAGTTCATTTATT
Found at i:37923023 original size:40 final size:40
Alignment explanation
Indices: 37922921--37923104 Score: 174
Period size: 40 Copynumber: 4.6 Consensus size: 40
37922911 AAATTGAATG
* * * * *
37922921 ATATCCGGGCTAAGCCCCGAAGACAATTATGCT-GAAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAG-TAGTT
* *
37922961 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
37923001 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTAGTT
* * * * * *
37923041 AAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGTG
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* * *
37923081 ATATCCGGGTTAAGTCCCGTAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
37923105 CTTGGTGCGG
Statistics
Matches: 121, Mismatches: 20, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
39 3 0.02
40 115 0.95
41 3 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
Found at i:37930460 original size:40 final size:38
Alignment explanation
Indices: 37930390--37930573 Score: 145
Period size: 40 Copynumber: 4.6 Consensus size: 38
37930380 AAATTGAATG
* * *
37930390 ATATTCGGGCTAAGCCCCGAAGACAATTGTGCTGAAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC--AAAATT
* * **
37930430 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-A-AAATT
**
37930470 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAA--AATT
* * *
37930510 AAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCATG
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAA--ATT
* * *
37930550 ATATCCGGGTTAAGTCCCGTAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
37930574 CTTGGTGCGG
Statistics
Matches: 116, Mismatches: 21, Indels: 14
0.77 0.14 0.09
Matches are distributed among these distances:
39 5 0.04
40 109 0.94
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (38 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAAATT
Found at i:37935638 original size:37 final size:37
Alignment explanation
Indices: 37935574--37935647 Score: 91
Period size: 37 Copynumber: 2.0 Consensus size: 37
37935564 TTACAAGCCA
37935574 AAATCATTATAAGCCACATCTCATGGCTACAT-ACAAC
1 AAATCATTATAAGCCACATCTCATGGCTA-ATCACAAC
*
37935611 AAATCATTATAAGCCA-ATACAT-TTGGCTAATCACAAC
1 AAATCATTATAAGCCACAT-C-TCATGGCTAATCACAAC
37935648 GACATCGATC
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
36 4 0.12
37 28 0.85
38 1 0.03
ACGTcount: A:0.42, C:0.24, G:0.08, T:0.26
Consensus pattern (37 bp):
AAATCATTATAAGCCACATCTCATGGCTAATCACAAC
Found at i:37939530 original size:45 final size:45
Alignment explanation
Indices: 37939462--37939549 Score: 140
Period size: 45 Copynumber: 2.0 Consensus size: 45
37939452 CCAAAACATG
* *
37939462 TGTCATATACATCATGAACTCAGACCACAACTCAATGAGTTCATA
1 TGTCACATACATCATAAACTCAGACCACAACTCAATGAGTTCATA
* *
37939507 TGTCACATATATCATAAATTCAGACCACAACTCAATGAGTTCA
1 TGTCACATACATCATAAACTCAGACCACAACTCAATGAGTTCA
37939550 GATCATATAG
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
45 39 1.00
ACGTcount: A:0.39, C:0.24, G:0.10, T:0.27
Consensus pattern (45 bp):
TGTCACATACATCATAAACTCAGACCACAACTCAATGAGTTCATA
Found at i:37947058 original size:40 final size:40
Alignment explanation
Indices: 37946900--37947077 Score: 155
Period size: 40 Copynumber: 4.5 Consensus size: 40
37946890 CGGATGATAA
* * * *
37946900 CCGGACTAAGTTCCGAAGGCATTTGTGCGAGTTGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTACGAGTAGCTATAT
* * * * * * *
37946940 CCGGGCTATGTCCCGAAGGTATTTATGCTAG-CGATTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTACGAGTAG-CTATAT
* *** *
37946980 CCGGGATAAGTCCCGAAGGCATTTGTGTAAGTTA-CTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTACGAG-TAGCTATAT
*
37947020 CCGGGCTAAGTCCCGAAGGCATTTGAACGAGTAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTACGAGTAGCTATAT
*
37947060 CC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
37947078 TACTTGGTTT
Statistics
Matches: 110, Mismatches: 24, Indels: 9
0.77 0.17 0.06
Matches are distributed among these distances:
39 18 0.16
40 92 0.84
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTACGAGTAGCTATAT
Found at i:37947059 original size:80 final size:77
Alignment explanation
Indices: 37946900--37947077 Score: 187
Period size: 80 Copynumber: 2.2 Consensus size: 77
37946890 CGGATGATAA
* * * * * *
37946900 CCGGACTAAGTTCCGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTATGTCCCGAAGGTATTTA
1 CCGGA-TAAGTCCCGAAGGCATTTGTGCAAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTA
*
37946965 TGCTAGCGATTATAT
65 CGCTAGC-A-TATAT
*
37946980 CCGGGATAAGTCCCGAAGGCATTTGTGTAAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTG
1 CC-GGATAAGTCCCGAAGGCATTTGTGCAAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTT-
*
37947045 AACGAGTAGC-TATAT
64 -ACG-CTAGCATATAT
* *
37947060 CCGGCTAAATCCCGAAGG
1 CCGGATAAGTCCCGAAGG
37947078 TACTTGGTTT
Statistics
Matches: 83, Mismatches: 11, Indels: 9
0.81 0.11 0.09
Matches are distributed among these distances:
79 14 0.17
80 60 0.72
81 3 0.04
82 2 0.02
83 4 0.05
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (77 bp):
CCGGATAAGTCCCGAAGGCATTTGTGCAAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTAC
GCTAGCATATAT
Found at i:37954987 original size:40 final size:40
Alignment explanation
Indices: 37954922--37955125 Score: 268
Period size: 40 Copynumber: 5.1 Consensus size: 40
37954912 ACTAAGATCT
* *
37954922 GAAGGCATTTGTGCGAGTTGCTATATCCGGGCTATGTCCC
1 GAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCC
* * * ** *
37954962 GAAGGTATTTATGCTAGCGATTATATCCGGGCTAAGTCCC
1 GAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCC
37955002 GAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCC
1 GAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCC
*
37955042 GAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCC
1 GAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCC
* * * *
37955082 GAAGGCATTTGAGTGAG-TAGCTATATCC-GGTTAAATCCC
1 GAAGGCATTTGTGCGAGTTA-CTATATCCGGGCTAAGTCCC
37955121 GAAGG
1 GAAGG
37955126 TACTTGGTTT
Statistics
Matches: 143, Mismatches: 20, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
39 16 0.11
40 127 0.89
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
GAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCC
Found at i:37967094 original size:16 final size:16
Alignment explanation
Indices: 37967073--37967107 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
37967063 AATATATATA
37967073 CATAAAATAGTCGTTT
1 CATAAAATAGTCGTTT
37967089 CATAAAATAGTCGTTT
1 CATAAAATAGTCGTTT
37967105 CAT
1 CAT
37967108 CTTTAGTATT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.37, C:0.14, G:0.11, T:0.37
Consensus pattern (16 bp):
CATAAAATAGTCGTTT
Found at i:37967121 original size:7 final size:7
Alignment explanation
Indices: 37967109--37967138 Score: 51
Period size: 7 Copynumber: 4.3 Consensus size: 7
37967099 TCGTTTCATC
37967109 TTTAGTA
1 TTTAGTA
37967116 TTTAGTA
1 TTTAGTA
*
37967123 TTTAGCA
1 TTTAGTA
37967130 TTTAGTA
1 TTTAGTA
37967137 TT
1 TT
37967139 ATGTATATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.27, C:0.03, G:0.13, T:0.57
Consensus pattern (7 bp):
TTTAGTA
Found at i:37968025 original size:21 final size:21
Alignment explanation
Indices: 37968000--37968063 Score: 67
Period size: 21 Copynumber: 3.0 Consensus size: 21
37967990 GTCATCCTCT
37968000 CAAC-ACCCACAACCGAAGCAA
1 CAACAACCC-CAACCGAAGCAA
* *
37968021 CAACAACCCCCACCGGAGCAA
1 CAACAACCCCAACCGAAGCAA
* **
37968042 CTACAACCCCCGCCGAAGCAA
1 CAACAACCCCAACCGAAGCAA
37968063 C
1 C
37968064 CAAGGAGGAA
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
21 33 0.89
22 4 0.11
ACGTcount: A:0.39, C:0.47, G:0.12, T:0.02
Consensus pattern (21 bp):
CAACAACCCCAACCGAAGCAA
Found at i:37968213 original size:30 final size:31
Alignment explanation
Indices: 37968179--37968250 Score: 85
Period size: 30 Copynumber: 2.3 Consensus size: 31
37968169 TATTGTTTCA
37968179 TTTAATAAAAAAGAAGTTTTTT-TTTTAT-AT
1 TTTAATAAAAAAGAA-TTTTTTATTTTATAAT
* **
37968209 TTTAATAGTAAATTAATTTTTTATTTTATAAT
1 TTTAATA-AAAAAGAATTTTTTATTTTATAAT
37968241 TTTAATAAAA
1 TTTAATAAAA
37968251 TATAAGTTCT
Statistics
Matches: 35, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
30 13 0.37
31 13 0.37
32 9 0.26
ACGTcount: A:0.42, C:0.00, G:0.04, T:0.54
Consensus pattern (31 bp):
TTTAATAAAAAAGAATTTTTTATTTTATAAT
Found at i:37971415 original size:40 final size:39
Alignment explanation
Indices: 37971371--37971471 Score: 123
Period size: 40 Copynumber: 2.5 Consensus size: 39
37971361 GATAAATTGA
*
37971371 CTATATTCGACACTAAGTGTGC-AATTTGAAATAGCTTCGG
1 CTATATTAG-CACTAAGTGTGCGAA-TTGAAATAGCTTCGG
* *
37971411 CTATAAATAGCACTAAGTGTGCGAATTGGAATAGCTTCGG
1 CTAT-ATTAGCACTAAGTGTGCGAATTGAAATAGCTTCGG
*
37971451 CTATATGAGGCACTAAGTGTG
1 CTATATTA-GCACTAAGTGTG
37971472 TGATACCGAG
Statistics
Matches: 53, Mismatches: 5, Indels: 6
0.83 0.08 0.09
Matches are distributed among these distances:
39 2 0.04
40 46 0.87
41 5 0.09
ACGTcount: A:0.31, C:0.16, G:0.24, T:0.30
Consensus pattern (39 bp):
CTATATTAGCACTAAGTGTGCGAATTGAAATAGCTTCGG
Found at i:37978767 original size:40 final size:40
Alignment explanation
Indices: 37978690--37978952 Score: 395
Period size: 40 Copynumber: 6.6 Consensus size: 40
37978680 AAACCAAGTA
* * * *
37978690 CCTTCGGGAATTAG-CTGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGTTATAG-TAACTCGCACAAATG
*
37978729 CCTTCGGGATTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
37978769 CCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGG-TTATAGTAACTCGCACAAATG
* * *
37978810 CCTTCGGGACTTAGCCCAGATATAGTAACTCGTACAAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
*
37978850 CCTCCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
*
37978890 CCTTCGGGACTTAGCACGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
*
37978930 CCTTCGGGACTTGGCCCGGTTAT
1 CCTTCGGGACTTAGCCCGGTTAT
37978953 CATCCAAATA
Statistics
Matches: 205, Mismatches: 16, Indels: 5
0.91 0.07 0.02
Matches are distributed among these distances:
39 14 0.07
40 152 0.74
41 39 0.19
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
Found at i:37983265 original size:28 final size:28
Alignment explanation
Indices: 37983200--37983300 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
37983190 ATAGTGAATC
*
37983200 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
37983229 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
37983257 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
37983287 CGCACACTTAGTGC
1 CGCACACTTAGTGC
37983301 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:37991185 original size:28 final size:28
Alignment explanation
Indices: 37991120--37991220 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
37991110 ATAGTGAATC
*
37991120 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
37991149 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
37991177 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
37991207 CGCACACTTAGTGC
1 CGCACACTTAGTGC
37991221 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Done.