Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr03 135709677
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 135709677
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 129 of 438
Found at i:38301882 original size:25 final size:25
Alignment explanation
Indices: 38301800--38301883 Score: 75
Period size: 25 Copynumber: 3.4 Consensus size: 25
38301790 TTCAGCTCAC
*
38301800 ATGAGCTTACCG-TTACTCAGCTCGT
1 ATGAGCATACCGATTACT-AGCTCGT
* * *
38301825 ATGAGCTTACTGATTAC-AGCTTGT
1 ATGAGCATACCGATTACTAGCTCGT
* *
38301849 AAGAACATACCGATT-CTTAGCTCGT
1 ATGAGCATACCGATTAC-TAGCTCGT
38301874 ATGAGCATAC
1 ATGAGCATAC
38301884 ATGTACAGGA
Statistics
Matches: 47, Mismatches: 9, Indels: 6
0.76 0.15 0.10
Matches are distributed among these distances:
23 1 0.02
24 17 0.36
25 25 0.53
26 4 0.09
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (25 bp):
ATGAGCATACCGATTACTAGCTCGT
Found at i:38310854 original size:40 final size:40
Alignment explanation
Indices: 38310809--38310938 Score: 142
Period size: 40 Copynumber: 3.2 Consensus size: 40
38310799 CGGAATATAA
38310809 CCGGATATAAGCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAAGCATGTGCACAAATGCCTTCGGGTCTTAGC
* * *
38310849 CCGGATAGAATG-ACT-CGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA-GCA-TGTGCACAAATGCCTTCGGGTCTTAGC
* * *
38310889 CCGGATAT-AGC-CGCTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAAGCATG-T-GCACAAATGCCTTCGGGTCTTAGC
38310929 CCGGATATAA
1 CCGGATATAA
38310939 TTTCCAGCAT
Statistics
Matches: 74, Mismatches: 9, Indels: 13
0.77 0.09 0.14
Matches are distributed among these distances:
38 1 0.01
39 1 0.01
40 69 0.93
41 3 0.04
ACGTcount: A:0.25, C:0.27, G:0.25, T:0.24
Consensus pattern (40 bp):
CCGGATATAAGCATGTGCACAAATGCCTTCGGGTCTTAGC
Found at i:38310953 original size:40 final size:40
Alignment explanation
Indices: 38310825--38310976 Score: 155
Period size: 40 Copynumber: 3.8 Consensus size: 40
38310815 ATAAGCATGT
* * *
38310825 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCAC-CA
** * *
38310865 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAGCCGCTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCACCA
* **
38310905 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCACCA
* * *
38310945 GCATAATTGTCTTCGGGGCTTAGCCCGGATAT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
38310977 CATTCAATTT
Statistics
Matches: 93, Mismatches: 16, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
39 2 0.02
40 89 0.96
41 2 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.26
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCACCA
Found at i:38310959 original size:80 final size:80
Alignment explanation
Indices: 38310825--38310976 Score: 200
Period size: 80 Copynumber: 1.9 Consensus size: 80
38310815 ATAAGCATGT
* *
38310825 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGGCTTAGCC
38310890 CGGATATAGCCGCTA
66 CGGATATAGCCGCTA
* * ** * *
38310905 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGGCTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGGCTTAG
38310968 CCCGGATAT
64 CCCGGATAT
38310977 CATTCAATTT
Statistics
Matches: 62, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
79 3 0.05
80 59 0.95
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.26
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGGCTTAGCC
CGGATATAGCCGCTA
Found at i:38314941 original size:24 final size:23
Alignment explanation
Indices: 38314909--38315089 Score: 218
Period size: 24 Copynumber: 7.6 Consensus size: 23
38314899 ACCAAACGTT
* **
38314909 GCACACATAGTGCTTATTATGTTC
1 GCACACATAGTGCTTAGTA-AATC
*
38314933 GCACACATAGTGCCATAGTAAATC
1 GCACACATAGTG-CTTAGTAAATC
38314957 GCACACATAGTGCTATAGTAAATC
1 GCACACATAGTGCT-TAGTAAATC
*
38314981 GCACACATAGTGCCATAGTAAATC
1 GCACACATAGTG-CTTAGTAAATC
*
38315005 GCACACATAGTGCCATAGTAAATC
1 GCACACATAGTG-CTTAGTAAATC
*
38315029 GCACACATAGTGCCATAGTAAATC
1 GCACACATAGTG-CTTAGTAAATC
* *
38315053 ACACACATAGTGCCATAGTAAATC
1 GCACACATAGTG-CTTAGTAAATC
38315077 GCACACATAGTGC
1 GCACACATAGTGC
38315090 ATTTGAGATT
Statistics
Matches: 146, Mismatches: 8, Indels: 7
0.91 0.05 0.04
Matches are distributed among these distances:
23 2 0.01
24 138 0.95
25 6 0.04
ACGTcount: A:0.36, C:0.24, G:0.17, T:0.23
Consensus pattern (23 bp):
GCACACATAGTGCTTAGTAAATC
Found at i:38314983 original size:48 final size:48
Alignment explanation
Indices: 38314931--38315089 Score: 300
Period size: 48 Copynumber: 3.3 Consensus size: 48
38314921 CTTATTATGT
*
38314931 TCGCACACATAGTGCCATAGTAAATCGCACACATAGTGCTATAGTAAA
1 TCGCACACATAGTGCCATAGTAAATCGCACACATAGTGCCATAGTAAA
38314979 TCGCACACATAGTGCCATAGTAAATCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAATCGCACACATAGTGCCATAGTAAA
*
38315027 TCGCACACATAGTGCCATAGTAAATCACACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAATCGCACACATAGTGCCATAGTAAA
38315075 TCGCACACATAGTGC
1 TCGCACACATAGTGC
38315090 ATTTGAGATT
Statistics
Matches: 109, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 109 1.00
ACGTcount: A:0.37, C:0.25, G:0.16, T:0.21
Consensus pattern (48 bp):
TCGCACACATAGTGCCATAGTAAATCGCACACATAGTGCCATAGTAAA
Found at i:38315026 original size:72 final size:72
Alignment explanation
Indices: 38314931--38315089 Score: 300
Period size: 72 Copynumber: 2.2 Consensus size: 72
38314921 CTTATTATGT
* *
38314931 TCGCACACATAGTGCCATAGTAAATCGCACACATAGTGCTATAGTAAATCGCACACATAGTGCCA
1 TCGCACACATAGTGCCATAGTAAATCGCACACATAGTGCCATAGTAAATCACACACATAGTGCCA
38314996 TAGTAAA
66 TAGTAAA
38315003 TCGCACACATAGTGCCATAGTAAATCGCACACATAGTGCCATAGTAAATCACACACATAGTGCCA
1 TCGCACACATAGTGCCATAGTAAATCGCACACATAGTGCCATAGTAAATCACACACATAGTGCCA
38315068 TAGTAAA
66 TAGTAAA
38315075 TCGCACACATAGTGC
1 TCGCACACATAGTGC
38315090 ATTTGAGATT
Statistics
Matches: 85, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
72 85 1.00
ACGTcount: A:0.37, C:0.25, G:0.16, T:0.21
Consensus pattern (72 bp):
TCGCACACATAGTGCCATAGTAAATCGCACACATAGTGCCATAGTAAATCACACACATAGTGCCA
TAGTAAA
Found at i:38319119 original size:20 final size:20
Alignment explanation
Indices: 38319094--38319146 Score: 88
Period size: 20 Copynumber: 2.6 Consensus size: 20
38319084 ATAAGTGGGA
*
38319094 CACACGGGCGTGTCTCTAAG
1 CACACGGGCGTGTCCCTAAG
*
38319114 CACACGGGCGGGTCCCTAAG
1 CACACGGGCGTGTCCCTAAG
38319134 CACACGGGCGTGT
1 CACACGGGCGTGT
38319147 GCTTTGCCTC
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.19, C:0.32, G:0.34, T:0.15
Consensus pattern (20 bp):
CACACGGGCGTGTCCCTAAG
Found at i:38329382 original size:16 final size:16
Alignment explanation
Indices: 38329351--38329400 Score: 55
Period size: 16 Copynumber: 3.1 Consensus size: 16
38329341 TTGTAACACC
**
38329351 CCAAAAATCCCGAAAT
1 CCAAAAATCCTAAAAT
*
38329367 TCAAAAATCCTAAAAT
1 CCAAAAATCCTAAAAT
**
38329383 CCCGAAATCCTAAAAT
1 CCAAAAATCCTAAAAT
38329399 CC
1 CC
38329401 TGAATTTTCT
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
16 28 1.00
ACGTcount: A:0.48, C:0.30, G:0.04, T:0.18
Consensus pattern (16 bp):
CCAAAAATCCTAAAAT
Found at i:38329386 original size:24 final size:24
Alignment explanation
Indices: 38329354--38329401 Score: 78
Period size: 24 Copynumber: 2.0 Consensus size: 24
38329344 TAACACCCCA
*
38329354 AAAATCCCGAAATTCAAAAATCCT
1 AAAATCCCGAAATCCAAAAATCCT
*
38329378 AAAATCCCGAAATCCTAAAATCCT
1 AAAATCCCGAAATCCAAAAATCCT
38329402 GAATTTTCTT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.48, C:0.27, G:0.04, T:0.21
Consensus pattern (24 bp):
AAAATCCCGAAATCCAAAAATCCT
Found at i:38330678 original size:16 final size:16
Alignment explanation
Indices: 38330653--38330687 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
38330643 GCAAACGCCA
*
38330653 AAATGCCGAAAAGTCG
1 AAATGCCGAAAAGCCG
*
38330669 AAATGTCGAAAAGCCG
1 AAATGCCGAAAAGCCG
38330685 AAA
1 AAA
38330688 GTTTGGCTAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.49, C:0.17, G:0.23, T:0.11
Consensus pattern (16 bp):
AAATGCCGAAAAGCCG
Found at i:38330948 original size:29 final size:29
Alignment explanation
Indices: 38330913--38330986 Score: 76
Period size: 29 Copynumber: 2.6 Consensus size: 29
38330903 AATGTGACTA
* *
38330913 GGCCTAACGAGCCCTACAAATGTGATTTG
1 GGCCTAACGAGCCATACAAAGGTGATTTG
* * * *
38330942 GGCCTAATGGGCCATATACAGGTGATTTG
1 GGCCTAACGAGCCATACAAAGGTGATTTG
* *
38330971 GGCCTAATGTGCCATA
1 GGCCTAACGAGCCATA
38330987 TGAATATGAT
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 38 1.00
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (29 bp):
GGCCTAACGAGCCATACAAAGGTGATTTG
Found at i:38330996 original size:29 final size:29
Alignment explanation
Indices: 38330935--38331012 Score: 97
Period size: 29 Copynumber: 2.7 Consensus size: 29
38330925 CCTACAAATG
*
38330935 TGATTTGGGCCTAATGGGCCATATACAGG
1 TGATTTGGGCCTAATGGGCCATATACAGA
* *
38330964 TGATTTGGGCCTAATGTGCCATATGA-ATA
1 TGATTTGGGCCTAATGGGCCATAT-ACAGA
*
38330993 TGA-TTGGGCTTAATGGGCCA
1 TGATTTGGGCCTAATGGGCCA
38331013 GATGCAGGTA
Statistics
Matches: 43, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
28 15 0.35
29 27 0.63
30 1 0.02
ACGTcount: A:0.24, C:0.15, G:0.29, T:0.31
Consensus pattern (29 bp):
TGATTTGGGCCTAATGGGCCATATACAGA
Found at i:38335875 original size:23 final size:24
Alignment explanation
Indices: 38335836--38335903 Score: 68
Period size: 23 Copynumber: 2.8 Consensus size: 24
38335826 GCTCCTCCTA
* *
38335836 AGCTGATGGACAGTAAGCTCT-ATTG
1 AGCTGA-GAACAGTAAGCTCTGA-CG
*
38335861 AGCTGA-AACAGTAAGCTTTGACG
1 AGCTGAGAACAGTAAGCTCTGACG
*
38335884 AGTTGAGAACAGTAAGCTCT
1 AGCTGAGAACAGTAAGCTCT
38335904 TACAAGCTAA
Statistics
Matches: 36, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
23 17 0.47
24 13 0.36
25 6 0.17
ACGTcount: A:0.32, C:0.16, G:0.26, T:0.25
Consensus pattern (24 bp):
AGCTGAGAACAGTAAGCTCTGACG
Found at i:38346403 original size:29 final size:29
Alignment explanation
Indices: 38346336--38346448 Score: 129
Period size: 29 Copynumber: 3.9 Consensus size: 29
38346326 AAGTCTACAT
* *
38346336 ACATGCATATGGCCCACTAGGCCC-AATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
*
38346364 TCATTCATATGGCCCATTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
** * * *
38346393 ACATTTGTATGGCCTATAAGGCCCAATTC
1 ACATTCATATGGCCCATTAGGCCCAAATC
* *
38346422 ACATTCATATGGACCATTAGACCCAAA
1 ACATTCATATGGCCCATTAGGCCCAAA
38346449 GGAAATTCAT
Statistics
Matches: 68, Mismatches: 16, Indels: 1
0.80 0.19 0.01
Matches are distributed among these distances:
28 21 0.31
29 47 0.69
ACGTcount: A:0.31, C:0.29, G:0.15, T:0.25
Consensus pattern (29 bp):
ACATTCATATGGCCCATTAGGCCCAAATC
Found at i:38349326 original size:49 final size:49
Alignment explanation
Indices: 38349266--38349660 Score: 623
Period size: 49 Copynumber: 7.9 Consensus size: 49
38349256 GTACGAGATA
* *
38349266 TATATATGTGATAAGTCCTAATGGCCAATGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
*
38349315 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAAAGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
*
38349364 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGAGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
38349413 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--------TG
*
38349470 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 --TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
*
38349521 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
*
38349570 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA--GTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
38349617 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
38349661 TATATGTGTG
Statistics
Matches: 326, Mismatches: 10, Indels: 22
0.91 0.03 0.06
Matches are distributed among these distances:
47 45 0.14
49 231 0.71
51 1 0.00
57 2 0.01
59 47 0.14
ACGTcount: A:0.33, C:0.08, G:0.28, T:0.31
Consensus pattern (49 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
Found at i:38349680 original size:157 final size:148
Alignment explanation
Indices: 38349264--38349660 Score: 615
Period size: 157 Copynumber: 2.6 Consensus size: 148
38349254 ATGTACGAGA
*
38349264 TATATATATGTGATAAGTCCTAATGGCCAATGTGATGAATGTGAAAGTG-TG-TATATATGTGAT
1 TATATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAG-GATGATATATATGTGAT
* *
38349327 AAGGCCTAATGGCCGATGTGATGAAAGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGA
65 AAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGA
38349392 TGTGATGAATGAGAAAGTG
130 TGTGATGAATGAGAAAGTG
* *
38349411 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTATATA
1 TATATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAG-G-------ATG-ATATA
38349476 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTA
57 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTA
*
38349541 ATGGCCGATGTGATGAATGTGAAAGTG
122 ATGGCCGATGTGATGAATGAGAAAGTG
38349568 TATATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA-G-TG-TATATATGTGATA
1 TATATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGGATGATATATATGTGATA
38349630 AGGCCTAATGGCCGATGTGATGAATGTGAAA
66 AGGCCTAATGGCCGATGTGATGAATGTGAAA
38349661 TATATGTGTG
Statistics
Matches: 232, Mismatches: 8, Indels: 22
0.89 0.03 0.08
Matches are distributed among these distances:
145 44 0.19
147 48 0.21
155 3 0.01
157 137 0.59
ACGTcount: A:0.33, C:0.08, G:0.28, T:0.31
Consensus pattern (148 bp):
TATATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGGATGATATATATGTGATA
AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGAT
GTGATGAATGAGAAAGTG
Found at i:38349680 original size:206 final size:205
Alignment explanation
Indices: 38349264--38349665 Score: 709
Period size: 206 Copynumber: 2.0 Consensus size: 205
38349254 ATGTACGAGA
* *
38349264 TATATATATGTGATAAGTCCTAATGGCCAATGTGATGAATGTGAAAGTGTGTATATATGTGATAA
1 TATATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAA
* *
38349329 GGCCTAATGGCCGATGTGATGAAAGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATG
66 GGCCTAATGGCCGATGTGATGAAAGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATG
38349394 TGATGAATGAGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
131 TGATGAATGAGAAAG-GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
*
38349459 GTATATATATG
195 ATATATATATG
*
38349470 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAA
1 TATATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAA
*
38349535 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATG
66 GGCCTAATGGCCGATGTGATGAAAGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATG
*
38349600 TGATGAATGTGAAA-GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA-TA
131 TGATGAATGAGAAAGGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTA
38349663 TAT
196 TAT
38349666 GTGTGATATG
Statistics
Matches: 188, Mismatches: 8, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
203 4 0.02
204 47 0.25
206 137 0.73
ACGTcount: A:0.33, C:0.08, G:0.28, T:0.31
Consensus pattern (205 bp):
TATATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAA
GGCCTAATGGCCGATGTGATGAAAGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATG
TGATGAATGAGAAAGGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTA
TATATATATG
Found at i:38349801 original size:37 final size:37
Alignment explanation
Indices: 38349747--38349837 Score: 164
Period size: 37 Copynumber: 2.4 Consensus size: 37
38349737 AACTTGGAAA
*
38349747 TATGTTCCGGGTGAGACCCGATGACTACGTGTGGAGAT
1 TATG-TCCGGGTAAGACCCGATGACTACGTGTGGAGAT
38349785 TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
1 TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
38349822 TATGTCCGGGTAAGAC
1 TATGTCCGGGTAAGAC
38349838 TTCGTAATAA
Statistics
Matches: 52, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
37 48 0.92
38 4 0.08
ACGTcount: A:0.23, C:0.19, G:0.33, T:0.25
Consensus pattern (37 bp):
TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
Found at i:38352999 original size:40 final size:40
Alignment explanation
Indices: 38352944--38353041 Score: 106
Period size: 40 Copynumber: 2.5 Consensus size: 40
38352934 TGAATGATAT
* * *
38352944 CCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATTATAA
1 CCGGGCTAAGACCCGAAGACAATTATGCTAGAAACTATAA
* * * * * * *
38352984 CCGGGTTAAGACCCGATGGCAATTGTGCTAGTAGCTATAT
1 CCGGGCTAAGACCCGAAGACAATTATGCTAGAAACTATAA
38353024 CCGGGCTAAGACCCGAAG
1 CCGGGCTAAGACCCGAAG
38353042 GCATTCGTGC
Statistics
Matches: 46, Mismatches: 12, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
40 46 1.00
ACGTcount: A:0.30, C:0.23, G:0.27, T:0.20
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGACAATTATGCTAGAAACTATAA
Found at i:38353066 original size:40 final size:39
Alignment explanation
Indices: 38352984--38353093 Score: 130
Period size: 40 Copynumber: 2.7 Consensus size: 39
38352974 GAAATTATAA
* * * *
38352984 CCGGGTTAAGACCCGATGGCAATTGTGCTAGTAGCTATAT
1 CCGGGCTAAGACCCGAAGGC-ATTGTGCAAGTAGCTAAAT
* *
38353024 CCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAAT
1 CCGGGCTAAGACCCGAAGGCATT-GTGCAAGTAGCTAAAT
*
38353064 CCGAGCTAAGACCCGAAGGCATTTGTGCAA
1 CCGGGCTAAGACCCGAAGGCA-TTGTGCAA
38353094 ATCGTGATAT
Statistics
Matches: 61, Mismatches: 7, Indels: 4
0.85 0.10 0.06
Matches are distributed among these distances:
39 3 0.05
40 56 0.92
41 2 0.03
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (39 bp):
CCGGGCTAAGACCCGAAGGCATTGTGCAAGTAGCTAAAT
Found at i:38353106 original size:40 final size:40
Alignment explanation
Indices: 38353020--38353106 Score: 120
Period size: 40 Copynumber: 2.2 Consensus size: 40
38353010 GCTAGTAGCT
* * * *
38353020 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGAGCTAAGACCCGAAGGCATTCGTGCAAATCGTG
* *
38353060 AAATCCGAGCTAAGACCCGAAGGCATTTGTGCAAATCGTG
1 ATATCCGAGCTAAGACCCGAAGGCATTCGTGCAAATCGTG
38353100 ATATCCG
1 ATATCCG
38353107 GGTTAAGTCC
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.29, C:0.23, G:0.25, T:0.23
Consensus pattern (40 bp):
ATATCCGAGCTAAGACCCGAAGGCATTCGTGCAAATCGTG
Found at i:38355021 original size:40 final size:40
Alignment explanation
Indices: 38354966--38355117 Score: 259
Period size: 40 Copynumber: 3.8 Consensus size: 40
38354956 GAGAATTGAG
*
38354966 AGTGATATATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
38355006 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
*
38355046 AGTGATGTATCCGGACTAAGTTCTGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
* * *
38355086 AGTGATGTATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCA
38355118 ATCATGTTGG
Statistics
Matches: 106, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 106 1.00
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (40 bp):
AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
Found at i:38358934 original size:49 final size:49
Alignment explanation
Indices: 38358874--38359026 Score: 279
Period size: 49 Copynumber: 3.1 Consensus size: 49
38358864 GTATGAGATA
*
38358874 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
*
38358923 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAAAGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
*
38358972 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGAGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
38359021 TATATA
1 TATATA
38359027 ATGGCCGATG
Statistics
Matches: 100, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 100 1.00
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (49 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
Found at i:38359036 original size:35 final size:35
Alignment explanation
Indices: 38358990--38359061 Score: 126
Period size: 35 Copynumber: 2.1 Consensus size: 35
38358980 TGATAAGGCC
*
38358990 TAATGGCCGATGTGATGAATGAGAAAGTGTGTATA
1 TAATGGCCGATGTGATGAATGAGAAAGTGTATATA
*
38359025 TAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 TAATGGCCGATGTGATGAATGAGAAAGTGTATATA
38359060 TA
1 TA
38359062 TGTGATAAGG
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.35, C:0.06, G:0.29, T:0.31
Consensus pattern (35 bp):
TAATGGCCGATGTGATGAATGAGAAAGTGTATATA
Found at i:38359081 original size:49 final size:47
Alignment explanation
Indices: 38359025--38359146 Score: 226
Period size: 47 Copynumber: 2.6 Consensus size: 47
38359015 AGTGTGTATA
38359025 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCC
38359074 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
38359121 TAATGGCCGATGTGATGAATGTGAAA
1 TAATGGCCGATGTGATGAATGTGAAA
38359147 TATATGTGTG
Statistics
Matches: 73, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
47 44 0.60
49 29 0.40
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.30
Consensus pattern (47 bp):
TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
Found at i:38359082 original size:84 final size:84
Alignment explanation
Indices: 38358941--38359109 Score: 302
Period size: 84 Copynumber: 2.0 Consensus size: 84
38358931 TGATAAGGCC
*
38358941 TAATGGCCGATGTGATGAAAGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
1 TAATGGCCGATGTGATGAAAGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
*
38359006 GAATGAGAAAGTGTGTATA
66 GAATGAGAAAGTGTATATA
*
38359025 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
1 TAATGGCCGATGTGATGAAAGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
*
38359090 GAATGTGAAAGTGTATATA
66 GAATGAGAAAGTGTATATA
38359109 T
1 T
38359110 GTGATAAGGC
Statistics
Matches: 81, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
84 81 1.00
ACGTcount: A:0.33, C:0.07, G:0.30, T:0.30
Consensus pattern (84 bp):
TAATGGCCGATGTGATGAAAGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
GAATGAGAAAGTGTATATA
Found at i:38359287 original size:37 final size:37
Alignment explanation
Indices: 38359233--38359323 Score: 164
Period size: 37 Copynumber: 2.4 Consensus size: 37
38359223 AACTTGGAAA
*
38359233 TATGTTCCGGGTGAGACCCGATGACTACGTGTGGAGAT
1 TATG-TCCGGGTAAGACCCGATGACTACGTGTGGAGAT
38359271 TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
1 TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
38359308 TATGTCCGGGTAAGAC
1 TATGTCCGGGTAAGAC
38359324 TTCGTAATAA
Statistics
Matches: 52, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
37 48 0.92
38 4 0.08
ACGTcount: A:0.23, C:0.19, G:0.33, T:0.25
Consensus pattern (37 bp):
TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
Found at i:38362749 original size:49 final size:48
Alignment explanation
Indices: 38362692--38362918 Score: 209
Period size: 48 Copynumber: 4.8 Consensus size: 48
38362682 ACATGGTAGT
* * *
38362692 ATGCCAATGCCATATCCCGGATATGGTCTTACATGGGGATCACATATCG
1 ATGCCAATGCCATGTCCCAGACATGGTCTTACAT-GGGATCACATATCG
* * * **
38362741 ATTCCAATGCTATGTCCCAGACATGGTCTTACATGGGATCGCAGGTCG
1 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCG
* * * *
38362789 ATGCCAATGCCCTGTCCCAGACATGGTATTATATGGGATCATATATCG
1 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCG
* ** *
38362837 ATGCCAATAGCC-T-T----G-CTATGGTCTTACACGAAATTACATATCG
1 ATGCCAAT-GCCATGTCCCAGAC-ATGGTCTTACATGGGATCACATATCG
* *
38362880 ATGCCAAAG-AATGTCCCAGACATGGTCTTACATGGGATC
1 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATC
38362919 GTACATAACC
Statistics
Matches: 139, Mismatches: 30, Indels: 20
0.74 0.16 0.11
Matches are distributed among these distances:
42 3 0.02
43 28 0.20
47 16 0.12
48 60 0.43
49 32 0.23
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.27
Consensus pattern (48 bp):
ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCG
Found at i:38365079 original size:29 final size:28
Alignment explanation
Indices: 38365045--38365147 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
38365035 TACTCAATCA
*
38365045 CGCACACTTAGTGCCATATGATTCAAGCC
1 CGCACACTTAGTGCCATAT-ATTCAAGCT
* * *
38365074 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCATATA-TTCAAGCT
* *
38365103 CGCACACTTAGTGCCGTACATTACAAGCT
1 CGCACACTTAGTGCCATATATT-CAAGCT
*
38365132 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
38365148 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
28 2 0.03
29 59 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (28 bp):
CGCACACTTAGTGCCATATATTCAAGCT
Found at i:38373057 original size:29 final size:28
Alignment explanation
Indices: 38373023--38373125 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
38373013 TACTCAATCA
*
38373023 CGCACACTTAGTGCCATATGATTCAAGCC
1 CGCACACTTAGTGCCATAT-ATTCAAGCT
* * *
38373052 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCATATA-TTCAAGCT
* *
38373081 CGCACACTTAGTGCCGTACATTACAAGCT
1 CGCACACTTAGTGCCATATATT-CAAGCT
*
38373110 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
38373126 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
28 2 0.03
29 59 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (28 bp):
CGCACACTTAGTGCCATATATTCAAGCT
Found at i:38375826 original size:58 final size:57
Alignment explanation
Indices: 38375717--38375828 Score: 188
Period size: 57 Copynumber: 1.9 Consensus size: 57
38375707 TATGGTTCGA
* *
38375717 TTGGAATTTCTCGCTTGCCAGAACATCGCAAATGTGTCCATAAAGTGGATTACATGG
1 TTGGAATTTCTCGCTTGCCAGAACATCCCAAATGTGTCCATAAAGTCGATTACATGG
*
38375774 TTGGGATTTCTCGCTTGCCAGAACATCACCAAATGTGTCCATAAAGTCGATTACA
1 TTGGAATTTCTCGCTTGCCAGAACATC-CCAAATGTGTCCATAAAGTCGATTACA
38375829 CAATTCTTGC
Statistics
Matches: 51, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
57 26 0.51
58 25 0.49
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (57 bp):
TTGGAATTTCTCGCTTGCCAGAACATCCCAAATGTGTCCATAAAGTCGATTACATGG
Found at i:38382640 original size:28 final size:28
Alignment explanation
Indices: 38382609--38382690 Score: 84
Period size: 26 Copynumber: 3.0 Consensus size: 28
38382599 TTAGATTATA
38382609 AATAATTTCATTTTGGGCATTTTGCTGT
1 AATAATTTCATTTTGGGCATTTTGCTGT
* * *
38382637 AATAA-TGCCTTTAT-GG-ATTTT--TAT
1 AATAATTTCATTT-TGGGCATTTTGCTGT
38382661 AAATAATTTCATTTTGGGCATTTTGCTGT
1 -AATAATTTCATTTTGGGCATTTTGCTGT
38382690 A
1 A
38382691 TTAAGGCCTT
Statistics
Matches: 41, Mismatches: 6, Indels: 14
0.67 0.10 0.23
Matches are distributed among these distances:
24 2 0.05
25 6 0.15
26 12 0.29
27 12 0.29
28 7 0.17
29 2 0.05
ACGTcount: A:0.26, C:0.10, G:0.16, T:0.49
Consensus pattern (28 bp):
AATAATTTCATTTTGGGCATTTTGCTGT
Found at i:38382679 original size:53 final size:53
Alignment explanation
Indices: 38382604--38382712 Score: 200
Period size: 53 Copynumber: 2.1 Consensus size: 53
38382594 CTGATTTAGA
*
38382604 TTATAAATAATTTCATTTTGGGCATTTTGCTGTAATAATGCCTTTATGGATTT
1 TTATAAATAATTTCATTTTGGGCATTTTGCTGTAATAAGGCCTTTATGGATTT
*
38382657 TTATAAATAATTTCATTTTGGGCATTTTGCTGTATTAAGGCCTTTATGGATTT
1 TTATAAATAATTTCATTTTGGGCATTTTGCTGTAATAAGGCCTTTATGGATTT
38382710 TTA
1 TTA
38382713 CTTTAATTTG
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
53 54 1.00
ACGTcount: A:0.26, C:0.09, G:0.16, T:0.50
Consensus pattern (53 bp):
TTATAAATAATTTCATTTTGGGCATTTTGCTGTAATAAGGCCTTTATGGATTT
Found at i:38392591 original size:55 final size:54
Alignment explanation
Indices: 38392461--38392660 Score: 242
Period size: 54 Copynumber: 3.7 Consensus size: 54
38392451 TGGCATTTGG
* * ** * *
38392461 TAAGGTAAGGATATCATGTAAGATTATGCCAAGGCATGGCATTGATAAGTTCTA
1 TAAGGCAAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTA
* * *
38392515 TAAGGCAAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTACTA
1 TAAGGCAAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTT-CTA
* * *
38392570 TAAGGCAAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-A
1 TAAGGC-AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTA
* *
38392623 TAAGGCAAGGATACCACGTAAGACCATGTCAAGACATG
1 TAAGGCAAGGATACCATGTAAGACCATGCCAAGACATG
38392661 CCAACGGTAA
Statistics
Matches: 126, Mismatches: 17, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
52 4 0.03
53 30 0.24
54 45 0.36
55 43 0.34
56 4 0.03
ACGTcount: A:0.35, C:0.17, G:0.25, T:0.23
Consensus pattern (54 bp):
TAAGGCAAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTA
Found at i:38394291 original size:25 final size:25
Alignment explanation
Indices: 38394254--38394302 Score: 89
Period size: 25 Copynumber: 2.0 Consensus size: 25
38394244 AAAGTGCCTT
*
38394254 AGTTCTGAGAAATTTGAACATTGTG
1 AGTTCTGAAAAATTTGAACATTGTG
38394279 AGTTCTGAAAAATTTGAACATTGT
1 AGTTCTGAAAAATTTGAACATTGT
38394303 CAAGCCAATC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.35, C:0.08, G:0.20, T:0.37
Consensus pattern (25 bp):
AGTTCTGAAAAATTTGAACATTGTG
Found at i:38396519 original size:43 final size:43
Alignment explanation
Indices: 38396433--38396541 Score: 132
Period size: 42 Copynumber: 2.6 Consensus size: 43
38396423 CATCGACTTA
**
38396433 TGATTTATGTGTAAGACCATGTCTGAGACATTGGCATCGTATT
1 TGATTTATGTGTAAGACCATGTCTGAGACAGAGGCATCGTATT
* *
38396476 TGATTT-TGTGTAAGACCTTGTCTGGGACAGAGGCATCGATATT
1 TGATTTATGTGTAAGACCATGTCTGAGACAGAGGCATCG-TATT
* **
38396519 TGA-ATACATGTAAGACCATGTCT
1 TGATTTATGTGTAAGACCATGTCT
38396542 AGGACGTTGG
Statistics
Matches: 56, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
42 29 0.52
43 27 0.48
ACGTcount: A:0.27, C:0.15, G:0.24, T:0.35
Consensus pattern (43 bp):
TGATTTATGTGTAAGACCATGTCTGAGACAGAGGCATCGTATT
Found at i:38396554 original size:43 final size:43
Alignment explanation
Indices: 38396392--38396554 Score: 161
Period size: 43 Copynumber: 3.8 Consensus size: 43
38396382 CCAATATGTG
* * *
38396392 TTATCGTGTAAGACCACGTCTGGGATGTTGGCATCGACT-TATGA
1 TTAT-GTGTAAGACCATGTCTGGGACGTTGGCATCGA-TATTTGA
* *
38396436 TTTATGTGTAAGACCATGTCTGAGACATTGGCATCG-TATTTGA
1 -TTATGTGTAAGACCATGTCTGGGACGTTGGCATCGATATTTGA
* * *
38396479 TTTTGTGTAAGACCTTGTCTGGGACAG-AGGCATCGATATTTGA
1 TTATGTGTAAGACCATGTCTGGGAC-GTTGGCATCGATATTTGA
* ** *
38396522 ATACATGTAAGACCATGTCTAGGACGTTGGCAT
1 TTATGTGTAAGACCATGTCTGGGACGTTGGCAT
38396555 TGTATGAGCT
Statistics
Matches: 97, Mismatches: 17, Indels: 10
0.78 0.14 0.08
Matches are distributed among these distances:
42 31 0.32
43 35 0.36
44 27 0.28
45 4 0.04
ACGTcount: A:0.25, C:0.16, G:0.26, T:0.33
Consensus pattern (43 bp):
TTATGTGTAAGACCATGTCTGGGACGTTGGCATCGATATTTGA
Found at i:38403231 original size:42 final size:41
Alignment explanation
Indices: 38403180--38403333 Score: 164
Period size: 42 Copynumber: 3.7 Consensus size: 41
38403170 TAAGACTATG
* * *
38403180 TGTAAGACCATATCTGGGATATGGTATCAATATGAGACTTTT
1 TGTAAGACCATATCTGGGATATGGCATCGATATGAGA-TTTA
* * *
38403222 TGTAAGACCATATTTGGGATATGGCATCGATGTGAGATTTCG
1 TGTAAGACCATATCTGGGATATGGCATCGATATGAGATTT-A
* * * * *
38403264 TGTAATACCATAGCTGGGCTATTGGCATCGATACGAGATTACA
1 TGTAAGACCATATCTGGGATA-TGGCATCGATATGAGATT-TA
*
38403307 TGTAAGACCATATCTAGGATATGGCAT
1 TGTAAGACCATATCTGGGATATGGCAT
38403334 TGGTACGATA
Statistics
Matches: 92, Mismatches: 17, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
41 3 0.03
42 56 0.61
43 33 0.36
ACGTcount: A:0.30, C:0.14, G:0.24, T:0.32
Consensus pattern (41 bp):
TGTAAGACCATATCTGGGATATGGCATCGATATGAGATTTA
Found at i:38405186 original size:26 final size:26
Alignment explanation
Indices: 38405146--38405281 Score: 227
Period size: 26 Copynumber: 5.2 Consensus size: 26
38405136 TGATACAAAT
* * *
38405146 TGATAATAGGCTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
38405172 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
* *
38405198 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
38405224 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
38405250 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
38405276 TGATAA
1 TGATAA
38405282 GAATATCATG
Statistics
Matches: 103, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 103 1.00
ACGTcount: A:0.33, C:0.06, G:0.25, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:38411430 original size:43 final size:41
Alignment explanation
Indices: 38411343--38411451 Score: 114
Period size: 42 Copynumber: 2.6 Consensus size: 41
38411333 TATCGTACCT
* *
38411343 ATGCCATATCCCA-ATATGGTCTTACATGCGATCTCGTATCG
1 ATGCCATAGCCCAGATATGGTCTTACA-GCGATCTCATATCG
* *
38411384 ATGCCGATAGCCCAGCTATGGTCTTACA-CGAAGTCTCATATTG
1 ATGCC-ATAGCCCAGATATGGTCTTACAGCG-A-TCTCATATCG
* *
38411427 ATGCCATATCCTAGATATGGTCTTA
1 ATGCCATAGCCCAGATATGGTCTTA
38411452 TACGTAAATC
Statistics
Matches: 57, Mismatches: 7, Indels: 7
0.80 0.10 0.10
Matches are distributed among these distances:
41 7 0.12
42 25 0.44
43 25 0.44
ACGTcount: A:0.26, C:0.25, G:0.18, T:0.31
Consensus pattern (41 bp):
ATGCCATAGCCCAGATATGGTCTTACAGCGATCTCATATCG
Found at i:38416893 original size:53 final size:53
Alignment explanation
Indices: 38416813--38416921 Score: 218
Period size: 53 Copynumber: 2.1 Consensus size: 53
38416803 CCTTTACATG
38416813 AAGATTAGAGAAATTGAAATATTAGAATCCCCACACTTCCATAGTCGAACTAC
1 AAGATTAGAGAAATTGAAATATTAGAATCCCCACACTTCCATAGTCGAACTAC
38416866 AAGATTAGAGAAATTGAAATATTAGAATCCCCACACTTCCATAGTCGAACTAC
1 AAGATTAGAGAAATTGAAATATTAGAATCCCCACACTTCCATAGTCGAACTAC
38416919 AAG
1 AAG
38416922 CATGATCATA
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
53 56 1.00
ACGTcount: A:0.42, C:0.20, G:0.14, T:0.24
Consensus pattern (53 bp):
AAGATTAGAGAAATTGAAATATTAGAATCCCCACACTTCCATAGTCGAACTAC
Found at i:38419259 original size:24 final size:24
Alignment explanation
Indices: 38419232--38419294 Score: 126
Period size: 24 Copynumber: 2.6 Consensus size: 24
38419222 CTTATTATGT
38419232 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
38419256 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
38419280 TCGCACACATAGTGC
1 TCGCACACATAGTGC
38419295 ATTTGAGATT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 39 1.00
ACGTcount: A:0.35, C:0.27, G:0.17, T:0.21
Consensus pattern (24 bp):
TCGCACACATAGTGCCATAGTAAA
Found at i:38425692 original size:24 final size:24
Alignment explanation
Indices: 38425665--38425727 Score: 126
Period size: 24 Copynumber: 2.6 Consensus size: 24
38425655 CTTATTATGT
38425665 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
38425689 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
38425713 TCGCACACATAGTGC
1 TCGCACACATAGTGC
38425728 ATTTGAGATT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 39 1.00
ACGTcount: A:0.35, C:0.27, G:0.17, T:0.21
Consensus pattern (24 bp):
TCGCACACATAGTGCCATAGTAAA
Found at i:38433426 original size:24 final size:23
Alignment explanation
Indices: 38433394--38433549 Score: 204
Period size: 24 Copynumber: 6.6 Consensus size: 23
38433384 ACCAAACGTT
* **
38433394 GCACACATAGTGCTTATTATGTTC
1 GCACACATAGTGCTTAGTA-AATC
*
38433418 GCACACATAGTGCCATAGTAAATC
1 GCACACATAGTG-CTTAGTAAATC
38433442 GCACACATAGTGCTATAGTAAATC
1 GCACACATAGTGCT-TAGTAAATC
*
38433466 GCACACATAGTGCCATAGTAAATC
1 GCACACATAGTG-CTTAGTAAATC
*
38433490 GCACACATAGTGCATAGTAAATC
1 GCACACATAGTGCTTAGTAAATC
*
38433513 GCACACATAGTGCCATAGTAAATC
1 GCACACATAGTG-CTTAGTAAATC
38433537 GCACACATAGTGC
1 GCACACATAGTGC
38433550 ATTTGAGATT
Statistics
Matches: 122, Mismatches: 6, Indels: 9
0.89 0.04 0.07
Matches are distributed among these distances:
23 25 0.20
24 91 0.75
25 6 0.05
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (23 bp):
GCACACATAGTGCTTAGTAAATC
Found at i:38433468 original size:48 final size:48
Alignment explanation
Indices: 38433394--38433549 Score: 262
Period size: 48 Copynumber: 3.3 Consensus size: 48
38433384 ACCAAACGTT
* **
38433394 GCACACATAGTGCT-TATTATGTTCGCACACATAGTGCCATAGTAAATC
1 GCACACATAGTGCTATAGTA-AATCGCACACATAGTGCCATAGTAAATC
38433442 GCACACATAGTGCTATAGTAAATCGCACACATAGTGCCATAGTAAATC
1 GCACACATAGTGCTATAGTAAATCGCACACATAGTGCCATAGTAAATC
38433490 GCACACATAGTGC-ATAGTAAATCGCACACATAGTGCCATAGTAAATC
1 GCACACATAGTGCTATAGTAAATCGCACACATAGTGCCATAGTAAATC
38433537 GCACACATAGTGC
1 GCACACATAGTGC
38433550 ATTTGAGATT
Statistics
Matches: 104, Mismatches: 3, Indels: 3
0.95 0.03 0.03
Matches are distributed among these distances:
47 47 0.45
48 53 0.51
49 4 0.04
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (48 bp):
GCACACATAGTGCTATAGTAAATCGCACACATAGTGCCATAGTAAATC
Found at i:38433525 original size:47 final size:47
Alignment explanation
Indices: 38433416--38433551 Score: 263
Period size: 47 Copynumber: 2.9 Consensus size: 47
38433406 CTTATTATGT
38433416 TCGCACACATAGTGCCATAGTAAATCGCACACATAGTGCTATAGTAAA
1 TCGCACACATAGTGCCATAGTAAATCGCACACATAGTGC-ATAGTAAA
38433464 TCGCACACATAGTGCCATAGTAAATCGCACACATAGTGCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAATCGCACACATAGTGCATAGTAAA
38433511 TCGCACACATAGTGCCATAGTAAATCGCACACATAGTGCAT
1 TCGCACACATAGTGCCATAGTAAATCGCACACATAGTGCAT
38433552 TTGAGATTCC
Statistics
Matches: 88, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
47 49 0.56
48 39 0.44
ACGTcount: A:0.37, C:0.24, G:0.17, T:0.22
Consensus pattern (47 bp):
TCGCACACATAGTGCCATAGTAAATCGCACACATAGTGCATAGTAAA
Found at i:38433531 original size:71 final size:72
Alignment explanation
Indices: 38433416--38433549 Score: 252
Period size: 71 Copynumber: 1.9 Consensus size: 72
38433406 CTTATTATGT
*
38433416 TCGCACACATAGTGCCATAGTAAATCGCACACATAGTGCTATAGTAAATCGCACACATAGTGCCA
1 TCGCACACATAGTGCCATAGTAAATCGCACACATAGTGCCATAGTAAATCGCACACATAGTGCCA
38433481 TAGTAAA
66 TAGTAAA
38433488 TCGCACACATAGTG-CATAGTAAATCGCACACATAGTGCCATAGTAAATCGCACACATAGTGC
1 TCGCACACATAGTGCCATAGTAAATCGCACACATAGTGCCATAGTAAATCGCACACATAGTGC
38433550 ATTTGAGATT
Statistics
Matches: 61, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
71 47 0.77
72 14 0.23
ACGTcount: A:0.37, C:0.25, G:0.17, T:0.22
Consensus pattern (72 bp):
TCGCACACATAGTGCCATAGTAAATCGCACACATAGTGCCATAGTAAATCGCACACATAGTGCCA
TAGTAAA
Found at i:38435274 original size:46 final size:45
Alignment explanation
Indices: 38435222--38435416 Score: 157
Period size: 46 Copynumber: 4.2 Consensus size: 45
38435212 TCTCAGATAG
*
38435222 GTCTTACACTGA-CACATGTAACCATGCCAATGCATGTCCCAGACAT
1 GTCTTACACTGAGCACATCT--CCATGCCAATGCATGTCCCAGACAT
* *
38435268 GTCTTACACT-AGCACATCT-CATAGCCGACGCATGTCCCAGACAT
1 GTCTTACACTGAGCACATCTCCAT-GCCAATGCATGTCCCAGACAT
* * ** * ** *
38435312 GTATGACACTGA-CTAACATCTTGAGGCTGATGCATGTCCTAGACAT
1 GTCTTACACTGAGC--ACATCTCCATGCCAATGCATGTCCCAGACAT
* *
38435358 GTCTTACACT-AGCACTTGTCTCAATGCCAATGCCATGTCCCAGACAT
1 GTCTTACACTGAGCAC--ATCTCCATGCCAATG-CATGTCCCAGACAT
38435405 GGTCTTACACTG
1 -GTCTTACACTG
38435417 GCTCTCATTA
Statistics
Matches: 118, Mismatches: 19, Indels: 21
0.75 0.12 0.13
Matches are distributed among these distances:
43 3 0.03
44 30 0.25
45 3 0.03
46 58 0.49
47 14 0.12
48 10 0.08
ACGTcount: A:0.27, C:0.29, G:0.17, T:0.26
Consensus pattern (45 bp):
GTCTTACACTGAGCACATCTCCATGCCAATGCATGTCCCAGACAT
Found at i:38435349 original size:90 final size:93
Alignment explanation
Indices: 38435251--38435461 Score: 261
Period size: 94 Copynumber: 2.3 Consensus size: 93
38435241 AACCATGCCA
*
38435251 ATGCATGTCCCAGACATGTCTTACACTAGCAC-ATCTC-ATAGCCGACG-CATGTCCCAGACAT-
1 ATGCATGTCCCAGACATGTCTTACACTAGCACTATCTCAAT-GCCAACGCCATGTCCCAGACATG
38435312 GTATGACACTGACTAACATCT-TGAGGCTG
65 GTATGACACTGACTAACAT-TATGAGGCTG
* * *
38435341 ATGCATGTCCTAGACATGTCTTACACTAGCACTTGTCTCAATGCCAATGCCATGTCCCAGACATG
1 ATGCATGTCCCAGACATGTCTTACACTAGCAC-TATCTCAATGCCAACGCCATGTCCCAGACATG
* * * ** *
38435406 GTCTTACACTGGCTCTCATTATGTGGCTG
65 GTATGACACTGACTAACATTATGAGGCTG
*
38435435 ATGCATGTCCCAGACATGTCTAACACT
1 ATGCATGTCCCAGACATGTCTTACACT
38435462 GGCGCACATA
Statistics
Matches: 103, Mismatches: 12, Indels: 8
0.84 0.10 0.07
Matches are distributed among these distances:
90 31 0.30
92 9 0.09
93 17 0.17
94 46 0.45
ACGTcount: A:0.26, C:0.28, G:0.18, T:0.27
Consensus pattern (93 bp):
ATGCATGTCCCAGACATGTCTTACACTAGCACTATCTCAATGCCAACGCCATGTCCCAGACATGG
TATGACACTGACTAACATTATGAGGCTG
Found at i:38457878 original size:28 final size:28
Alignment explanation
Indices: 38457617--38457863 Score: 377
Period size: 28 Copynumber: 8.8 Consensus size: 28
38457607 CGAGAAGTAG
38457617 TTGGGCCTGATGGGCCATATGAATGTGA
1 TTGGGCCTGATGGGCCATATGAATGTGA
* * * *
38457645 TTGGGTCTGACGGGCCATATAAATATGA
1 TTGGGCCTGATGGGCCATATGAATGTGA
38457673 TTGGGCCTGATGGGCCATATGAATGTGA
1 TTGGGCCTGATGGGCCATATGAATGTGA
* * * *
38457701 TTGGGTCTGACGGGCCATATAAATATGA
1 TTGGGCCTGATGGGCCATATGAATGTGA
*
38457729 TTGGGCCTGATAGGCCATATGAATGTGA
1 TTGGGCCTGATGGGCCATATGAATGTGA
*
38457757 TTGGGCCTGATTGGCCATATGAATGTGA
1 TTGGGCCTGATGGGCCATATGAATGTGA
*
38457785 TTGGGCCTGATGGGCCATATGAATATGA
1 TTGGGCCTGATGGGCCATATGAATGTGA
*
38457813 TTGGGCCTGATGGGCCATATAAATGTGA
1 TTGGGCCTGATGGGCCATATGAATGTGA
*
38457841 TTGGGCCTAATGGGCCATATGAA
1 TTGGGCCTGATGGGCCATATGAA
38457864 CGAGATTTGG
Statistics
Matches: 195, Mismatches: 24, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 195 1.00
ACGTcount: A:0.25, C:0.15, G:0.32, T:0.29
Consensus pattern (28 bp):
TTGGGCCTGATGGGCCATATGAATGTGA
Found at i:38458223 original size:27 final size:27
Alignment explanation
Indices: 38458193--38458548 Score: 396
Period size: 27 Copynumber: 13.2 Consensus size: 27
38458183 TAATAAAGAG
38458193 AAATTACTGAAATACCCTCAATTTGTA
1 AAATTACTGAAATACCCTCAATTTGTA
**
38458220 AAATTA-TCGAAATACCCTTGATTTGTA
1 AAATTACT-GAAATACCCTCAATTTGTA
** * *
38458247 AAATTACCAAAATACCCTTAA-TTGTG
1 AAATTACTGAAATACCCTCAATTTGTA
* *
38458273 AAATTATTGAAATACCCTCGATTTGTA
1 AAATTACTGAAATACCCTCAATTTGTA
** * * *
38458300 AAATTACAAAAATACCCTCGATTTTTG
1 AAATTACTGAAATACCCTCAATTTGTA
* *
38458327 AAATTATTGAAACACCCTCAATTTGTA
1 AAATTACTGAAATACCCTCAATTTGTA
* * *
38458354 AAATTACCGAAACACCCTCAATTTTTA
1 AAATTACTGAAATACCCTCAATTTGTA
* *
38458381 AAATTACCGAAACACCCTCAATTTGTA
1 AAATTACTGAAATACCCTCAATTTGTA
* *
38458408 AAATTACTGAAATACTCTCGATTTGTA
1 AAATTACTGAAATACCCTCAATTTGTA
* * *
38458435 AAATTACCGAAATACCCTCGATTTATA
1 AAATTACTGAAATACCCTCAATTTGTA
38458462 AAATTACT-AATATACCCTCAATTTGTA
1 AAATTACTGAA-ATACCCTCAATTTGTA
* * *
38458489 AAATTTCTAAAATACCCTCGATTTGTA
1 AAATTACTGAAATACCCTCAATTTGTA
*
38458516 AAATTACTGAAACACCC-CTAATTTGTA
1 AAATTACTGAAATACCCTC-AATTTGTA
38458543 AAATTA
1 AAATTA
38458549 TCGAATACCC
Statistics
Matches: 279, Mismatches: 44, Indels: 12
0.83 0.13 0.04
Matches are distributed among these distances:
26 24 0.09
27 253 0.91
28 2 0.01
ACGTcount: A:0.40, C:0.19, G:0.08, T:0.33
Consensus pattern (27 bp):
AAATTACTGAAATACCCTCAATTTGTA
Found at i:38458604 original size:27 final size:27
Alignment explanation
Indices: 38458539--38458626 Score: 117
Period size: 26 Copynumber: 3.3 Consensus size: 27
38458529 ACCCCTAATT
*
38458539 TGTAAAATTATCG-AATACCCTTGTAG
1 TGTAAAATTACCGAAATACCCTTGTAG
38458565 TGTAAAATTACCGAAATA-CCTTGTAG
1 TGTAAAATTACCGAAATACCCTTGTAG
* *
38458591 TGTAAAATTGACCGATATACCCCTGTAG
1 TGTAAAATT-ACCGAAATACCCTTGTAG
*
38458619 GGTAAAAT
1 TGTAAAAT
38458627 GACTATTTTG
Statistics
Matches: 55, Mismatches: 4, Indels: 4
0.87 0.06 0.06
Matches are distributed among these distances:
26 29 0.53
27 12 0.22
28 14 0.25
ACGTcount: A:0.36, C:0.16, G:0.17, T:0.31
Consensus pattern (27 bp):
TGTAAAATTACCGAAATACCCTTGTAG
Found at i:38463858 original size:40 final size:39
Alignment explanation
Indices: 38463798--38463997 Score: 188
Period size: 40 Copynumber: 5.0 Consensus size: 39
38463788 CGGAATTTAA
* ** *
38463798 CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACAACTCGCACAA-TGCCTTCGGGTCTTAGC
* *** *
38463838 CCGGATTTGGTAACTTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTCGCAC-AATGCCTTCGGGTCTTAGC
38463878 CCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTCGCAC-AATGCCTTCGGGTCTTAGC
* * *
38463918 CCGGATATAATC-ACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAA-CAACTCGCA-CAATGCCTTCGGGTCTTAGC
* * *
38463958 CCGGATATAATC-ACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAA-CAACTCGCA-CAATGCCTTCGGGTCTTAGC
38463998 TCGGGTATCA
Statistics
Matches: 140, Mismatches: 17, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
40 137 0.98
41 3 0.02
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (39 bp):
CCGGATATAACAACTCGCACAATGCCTTCGGGTCTTAGC
Found at i:38463942 original size:80 final size:78
Alignment explanation
Indices: 38463798--38463997 Score: 238
Period size: 80 Copynumber: 2.5 Consensus size: 78
38463788 CGGAATTTAA
* * * ** *
38463798 CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGATTTGGTAACTTGCACAAATG
1 CCGGATATAA-CACTAGCACAA-TGCCTTCGGGTCTTAGCCCGGATATAATAACTAGCACAAATG
*
38463863 CCTTCGGGTCTTAGC
64 CCTTCGGGACTTAGC
* * *
38463878 CCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAGCCCGGATATAATCACTAGCATAAATG
1 CCGGATATAAC-ACTAGCAC-AATGCCTTCGGGTCTTAGCCCGGATATAATAACTAGCACAAATG
38463943 CCTTCGGGACTTAGC
64 CCTTCGGGACTTAGC
* *
38463958 CCGGATATAATCACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAA-CACTAGCA-CAATGCCTTCGGGTCTTAGC
38463998 TCGGGTATCA
Statistics
Matches: 103, Mismatches: 13, Indels: 8
0.83 0.10 0.06
Matches are distributed among these distances:
79 1 0.01
80 99 0.96
81 3 0.03
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (78 bp):
CCGGATATAACACTAGCACAATGCCTTCGGGTCTTAGCCCGGATATAATAACTAGCACAAATGCC
TTCGGGACTTAGC
Found at i:38469098 original size:23 final size:23
Alignment explanation
Indices: 38469045--38469098 Score: 58
Period size: 23 Copynumber: 2.3 Consensus size: 23
38469035 TTATTTCCAC
38469045 TCATTATTATTTTAATTACATCA
1 TCATTATTATTTTAATTACATCA
* *
38469068 T-ATTTATTATTTTTATTATAT-A
1 TCA-TTATTATTTTAATTACATCA
38469090 TCATATATT
1 TCAT-TATT
38469099 TGTTTCGAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
22 4 0.15
23 22 0.85
ACGTcount: A:0.33, C:0.07, G:0.00, T:0.59
Consensus pattern (23 bp):
TCATTATTATTTTAATTACATCA
Found at i:38470950 original size:27 final size:26
Alignment explanation
Indices: 38470920--38471011 Score: 112
Period size: 27 Copynumber: 3.4 Consensus size: 26
38470910 ATTACCAAAG
* *
38470920 TACCCTCGATTTATAGAATTATCATTT
1 TACCCTCGATTTACA-AATTACCATTT
*
38470947 TACCCTTGATTTACAAAATTACCATTT
1 TACCCTCGATTTAC-AAATTACCATTT
* *
38470974 TACCCTCAATTTACCAAATTACCGTTT
1 TACCCTCGATTTA-CAAATTACCATTT
38471001 TACCCTCGATT
1 TACCCTCGATT
38471012 GTGAAATTAC
Statistics
Matches: 56, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
27 54 0.96
28 2 0.04
ACGTcount: A:0.29, C:0.25, G:0.05, T:0.40
Consensus pattern (26 bp):
TACCCTCGATTTACAAATTACCATTT
Found at i:38471085 original size:80 final size:80
Alignment explanation
Indices: 38471015--38471191 Score: 193
Period size: 80 Copynumber: 2.2 Consensus size: 80
38471005 CTCGATTGTG
* *
38471015 AAATTACCAAAATACCCCT-GTAGGAT-AGAATTACCAAAATACCC-CTAGTTTGTAAAATTACC
1 AAATTACCAAAATACCACTGGTAGG-TGA-AATTACCAAAATACCCTC-AATTTGTAAAATTACC
*
38471077 AAAATACCCCTAGTTTGA
63 AAAATACCCCGAGTTTGA
* ** *
38471095 AAATTACCGAAATACCACTGGTTTGTGAAATTACCGAAATACCCTCAATTTGTAAAATTACCAAA
1 AAATTACCAAAATACCACTGGTAGGTGAAATTACCAAAATACCCTCAATTTGTAAAATTACCAAA
*
38471160 ATACCCCTGA-TTTATA
66 ATACCCC-GAGTTT-GA
38471176 AAATTA-CAAGAATACC
1 AAATTACCAA-AATACC
38471192 CTTGACTTTC
Statistics
Matches: 82, Mismatches: 9, Indels: 11
0.80 0.09 0.11
Matches are distributed among these distances:
80 63 0.77
81 19 0.23
ACGTcount: A:0.42, C:0.21, G:0.10, T:0.27
Consensus pattern (80 bp):
AAATTACCAAAATACCACTGGTAGGTGAAATTACCAAAATACCCTCAATTTGTAAAATTACCAAA
ATACCCCGAGTTTGA
Found at i:38471172 original size:27 final size:27
Alignment explanation
Indices: 38471010--38471206 Score: 181
Period size: 27 Copynumber: 7.3 Consensus size: 27
38471000 TTACCCTCGA
*
38471010 TTGTGAAATTACCAAAATACCCCTG-T
1 TTGTAAAATTACCAAAATACCCCTGAT
** *
38471036 AGGATAGAATTACCAAAATACCCCT-AGT
1 TTG-TAAAATTACCAAAATACCCCTGA-T
38471064 TTGTAAAATTACCAAAATACCCCT-AGT
1 TTGTAAAATTACCAAAATACCCCTGA-T
* * *
38471091 TTG-AAAATTACCGAAATACCACTGGT
1 TTGTAAAATTACCAAAATACCCCTGAT
* * *
38471117 TTGTGAAATTACCGAAATA-CCCTCAAT
1 TTGTAAAATTACCAAAATACCCCT-GAT
38471144 TTGTAAAATTACCAAAATACCCCTGAT
1 TTGTAAAATTACCAAAATACCCCTGAT
* *
38471171 TTATAAAATTA-CAAGAATACCCTTGACT
1 TTGTAAAATTACCAA-AATACCCCTGA-T
*
38471199 TTCTAAAA
1 TTGTAAAA
38471207 ATTATAGAAA
Statistics
Matches: 142, Mismatches: 20, Indels: 16
0.80 0.11 0.09
Matches are distributed among these distances:
26 29 0.20
27 99 0.70
28 14 0.10
ACGTcount: A:0.40, C:0.21, G:0.10, T:0.29
Consensus pattern (27 bp):
TTGTAAAATTACCAAAATACCCCTGAT
Found at i:38471215 original size:28 final size:28
Alignment explanation
Indices: 38471043--38471248 Score: 94
Period size: 27 Copynumber: 7.6 Consensus size: 28
38471033 TGTAGGATAG
* *
38471043 AATTACCA-AAATACCCCT-AGTTTGTAA
1 AATTACAAGAAATACCCCTGA-TTTATAA
* *
38471070 AATTACCA-AAATACCCCT-AGTTT-GAA
1 AATTACAAGAAATACCCCTGA-TTTATAA
* * * * *
38471096 AATTAC-CGAAATACCACTGGTTTGTGA
1 AATTACAAGAAATACCCCTGATTTATAA
* * *
38471123 AATTAC-CGAAATA-CCCTCAATTTGTAA
1 AATTACAAGAAATACCCCT-GATTTATAA
*
38471150 AATTACCA-AAATACCCCTGATTTATAA
1 AATTACAAGAAATACCCCTGATTTATAA
* *
38471177 AATTACAAG-AATACCCTTGACTTTCTAAA
1 AATTACAAGAAATACCCCTGA-TTTAT-AA
* ** * *
38471206 AATTA-TAGAAATACCATTGGTTTACAA
1 AATTACAAGAAATACCCCTGATTTATAA
*
38471233 AATTAC-TGAAATACCC
1 AATTACAAGAAATACCC
38471249 TTGGTTTGTA
Statistics
Matches: 145, Mismatches: 23, Indels: 22
0.76 0.12 0.12
Matches are distributed among these distances:
26 23 0.16
27 93 0.64
28 13 0.09
29 16 0.11
ACGTcount: A:0.41, C:0.20, G:0.09, T:0.30
Consensus pattern (28 bp):
AATTACAAGAAATACCCCTGATTTATAA
Found at i:38471243 original size:27 final size:27
Alignment explanation
Indices: 38471204--38471255 Score: 79
Period size: 27 Copynumber: 1.9 Consensus size: 27
38471194 TGACTTTCTA
38471204 AAAATTATAGAAATACCATTGGTTTAC
1 AAAATTATAGAAATACCATTGGTTTAC
*
38471231 AAAATTACT-GAAATACCCTTGGTTT
1 AAAATTA-TAGAAATACCATTGGTTT
38471256 GTATATTTGC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
27 22 0.96
28 1 0.04
ACGTcount: A:0.40, C:0.13, G:0.12, T:0.35
Consensus pattern (27 bp):
AAAATTATAGAAATACCATTGGTTTAC
Found at i:38471270 original size:110 final size:107
Alignment explanation
Indices: 38471043--38471249 Score: 256
Period size: 110 Copynumber: 1.9 Consensus size: 107
38471033 TGTAGGATAG
* * *
38471043 AATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTAGTTTGAAAATTACCGAAAT
1 AATTACCAAAATACCCCTAGTTTATAAAATTACCAAAATACCCCTAGTTTAAAAATTACAGAAAT
***
38471108 ACCACTGGTTTGTGAAATTACCGAAATACCCTCAATTTGTAA
66 ACCACTGGTTTACAAAATTACCGAAATACCCTCAATTTGTAA
* * *
38471150 AATTACCAAAATACCCCT-GATTTATAAAATTA-CAAGAATACCCTTGACTTTCTAAAAATTATA
1 AATTACCAAAATACCCCTAG-TTTATAAAATTACCAA-AATACCCCT-A-GTT-TAAAAATTACA
* *
38471213 GAAATACCATTGGTTTACAAAATTACTGAAATACCCT
61 GAAATACCACTGGTTTACAAAATTACCGAAATACCCT
38471250 TGGTTTGTAT
Statistics
Matches: 84, Mismatches: 11, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
106 4 0.05
107 37 0.44
108 1 0.01
109 2 0.02
110 40 0.48
ACGTcount: A:0.41, C:0.20, G:0.09, T:0.30
Consensus pattern (107 bp):
AATTACCAAAATACCCCTAGTTTATAAAATTACCAAAATACCCCTAGTTTAAAAATTACAGAAAT
ACCACTGGTTTACAAAATTACCGAAATACCCTCAATTTGTAA
Found at i:38472231 original size:25 final size:25
Alignment explanation
Indices: 38472180--38472269 Score: 119
Period size: 25 Copynumber: 3.6 Consensus size: 25
38472170 GAGGAAGTGC
*
38472180 AAAAGGGCTATGCCCCA-GTTACCG
1 AAAAGGGCTTTGCCCCAGGTTACCG
38472204 AAAAGGGCTTTGCCCCAGGTTACCG
1 AAAAGGGCTTTGCCCCAGGTTACCG
* * *
38472229 AAAAGGGCTTTTGCCCCAGTTTATCA
1 AAAAGGGC-TTTGCCCCAGGTTACCG
*
38472255 AAAAGGGGTTTGCCC
1 AAAAGGGCTTTGCCC
38472270 TAGTAATTAA
Statistics
Matches: 59, Mismatches: 5, Indels: 3
0.88 0.07 0.04
Matches are distributed among these distances:
24 16 0.27
25 22 0.37
26 21 0.36
ACGTcount: A:0.27, C:0.26, G:0.26, T:0.22
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGGTTACCG
Found at i:38474864 original size:27 final size:27
Alignment explanation
Indices: 38474834--38474925 Score: 114
Period size: 27 Copynumber: 3.4 Consensus size: 27
38474824 ATTATCAAAG
* * *
38474834 TACCCTCGATTTATAGAATTATCGTTT
1 TACCCTCGATTTACAAAATTACCGTTT
* *
38474861 TACCCTCGATTTACAAAATTGCCATTT
1 TACCCTCGATTTACAAAATTACCGTTT
*
38474888 TACCCT-TAGTTTACAAAATTACCGTTT
1 TACCCTCGA-TTTACAAAATTACCGTTT
38474915 TACCCTCGATT
1 TACCCTCGATT
38474926 GTGAAATTAC
Statistics
Matches: 54, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
26 1 0.02
27 52 0.96
28 1 0.02
ACGTcount: A:0.27, C:0.24, G:0.09, T:0.40
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACCGTTT
Found at i:38474987 original size:27 final size:27
Alignment explanation
Indices: 38474957--38475086 Score: 147
Period size: 27 Copynumber: 4.9 Consensus size: 27
38474947 TGAAGGATAG
*
38474957 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTAATTTGTAA
38474984 AATTACCAAAA-ACCCCTAATTTGTAA
1 AATTACCAAAATACCCCTAATTTGTAA
* * * ** *
38475010 AATTGCCGAAATACCACTGGTTTGTGA
1 AATTACCAAAATACCCCTAATTTGTAA
*
38475037 AATTACCGAAATA-CCCTCAATTTGTAA
1 AATTACCAAAATACCCCT-AATTTGTAA
* *
38475064 AATTTCCAAAATACCCCTGATTT
1 AATTACCAAAATACCCCTAATTT
38475087 ACAATGTTAC
Statistics
Matches: 85, Mismatches: 15, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
26 26 0.31
27 55 0.65
28 4 0.05
ACGTcount: A:0.38, C:0.22, G:0.09, T:0.30
Consensus pattern (27 bp):
AATTACCAAAATACCCCTAATTTGTAA
Found at i:38476120 original size:24 final size:24
Alignment explanation
Indices: 38476093--38476214 Score: 113
Period size: 25 Copynumber: 4.9 Consensus size: 24
38476083 GAGGAAGTGC
38476093 AAAAGGGCTATGCCCCAGTTATCG
1 AAAAGGGCTATGCCCCAGTTATCG
* * *
38476117 AAAAGGGCTTTGCCCTAGTTTACCG
1 AAAAGGGCTATGCCCCAG-TTATCG
* *
38476142 AAAAGGGCTTTTGCCCCAGTTTATCA
1 AAAAGGGC-TATGCCCCAG-TTATCG
*
38476168 AAAAGGG-TATTGCCCCAGTTAT-T
1 AAAAGGGCTA-TGCCCCAGTTATCG
*
38476191 AAAAGAGGCTAGGCCTCCAGTTAT
1 AAAAG-GGCTATGCC-CCAGTTAT
38476215 ATGATAAAGC
Statistics
Matches: 83, Mismatches: 9, Indels: 11
0.81 0.09 0.11
Matches are distributed among these distances:
23 5 0.06
24 26 0.31
25 31 0.37
26 21 0.25
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTATGCCCCAGTTATCG
Found at i:38476162 original size:26 final size:25
Alignment explanation
Indices: 38476093--38476187 Score: 122
Period size: 25 Copynumber: 3.8 Consensus size: 25
38476083 GAGGAAGTGC
*
38476093 AAAAGGGCTATGCCCCAG-TTATCG
1 AAAAGGGCTTTGCCCCAGTTTATCG
* *
38476117 AAAAGGGCTTTGCCCTAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTATCG
*
38476142 AAAAGGGCTTTTGCCCCAGTTTATCA
1 AAAAGGGC-TTTGCCCCAGTTTATCG
38476168 AAAAGGG-TATTGCCCCAGTT
1 AAAAGGGCT-TTGCCCCAGTT
38476188 ATTAAAAGAG
Statistics
Matches: 62, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
24 17 0.27
25 24 0.39
26 21 0.34
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.26
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTATCG
Found at i:38476479 original size:31 final size:31
Alignment explanation
Indices: 38476407--38476481 Score: 132
Period size: 31 Copynumber: 2.4 Consensus size: 31
38476397 CATTTACAGT
*
38476407 AAAGGCTTCGACCTAGTGATATGATTTATGA
1 AAAGGCTTCGGCCTAGTGATATGATTTATGA
*
38476438 AATGGCTTCGGCCTAGTGATATGATTTATGA
1 AAAGGCTTCGGCCTAGTGATATGATTTATGA
38476469 AAAGGCTTCGGCC
1 AAAGGCTTCGGCC
38476482 AGTAACTGTT
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 41 1.00
ACGTcount: A:0.28, C:0.16, G:0.25, T:0.31
Consensus pattern (31 bp):
AAAGGCTTCGGCCTAGTGATATGATTTATGA
Found at i:38477906 original size:44 final size:45
Alignment explanation
Indices: 38477823--38477923 Score: 107
Period size: 45 Copynumber: 2.3 Consensus size: 45
38477813 TCAAAGACAA
* *
38477823 TATGGCATCAGGATAAAATCAATAAGACCATAGCTAAAAA-ATGC
1 TATGGCATCATGATAAAATCAATAAGACCATAGCAAAAAAGATGC
* * * *
38477867 TATGGCATCATGATGGAAATGAGTAAGACCAT-GGAAAAAAGATGC
1 TATGGCATCATGAT-AAAATCAATAAGACCATAGCAAAAAAGATGC
* *
38477912 CATGGAATCATG
1 TATGGCATCATG
38477924 GTAATTAGGA
Statistics
Matches: 47, Mismatches: 8, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
44 19 0.40
45 28 0.60
ACGTcount: A:0.44, C:0.14, G:0.22, T:0.21
Consensus pattern (45 bp):
TATGGCATCATGATAAAATCAATAAGACCATAGCAAAAAAGATGC
Found at i:38478087 original size:27 final size:27
Alignment explanation
Indices: 38478057--38478173 Score: 127
Period size: 27 Copynumber: 4.3 Consensus size: 27
38478047 AGTCCACCGA
*
38478057 GACATTAAACATGAAGAAGTCTACTGG
1 GACACTAAACATGAAGAAGTCTACTGG
*
38478084 GACACTAAACAT-AAGGTAGTTCGT-CAT--
1 GACACTAAACATGAA-GAAG-TC-TAC-TGG
38478111 GACACTAAACATGAAGAAGTCTACTGG
1 GACACTAAACATGAAGAAGTCTACTGG
*
38478138 GACACTAAACATG-AGAAAGTCCACTGG
1 GACACTAAACATGAAG-AAGTCTACTGG
38478165 GACACTAAA
1 GACACTAAA
38478174 ACACAGAGAT
Statistics
Matches: 77, Mismatches: 4, Indels: 18
0.78 0.04 0.18
Matches are distributed among these distances:
25 2 0.03
26 7 0.09
27 61 0.79
28 5 0.06
29 2 0.03
ACGTcount: A:0.41, C:0.19, G:0.21, T:0.20
Consensus pattern (27 bp):
GACACTAAACATGAAGAAGTCTACTGG
Found at i:38478169 original size:54 final size:53
Alignment explanation
Indices: 38478046--38478173 Score: 152
Period size: 54 Copynumber: 2.4 Consensus size: 53
38478036 CATCATAGTT
* * *
38478046 AAGTCCACCGAGACATTAAACATGAAGAAGTCTACTGGGACACTAAACATAAGG
1 AAGTCCACTG-GACACTAAACATGAAGAAGTCTACTGGGACACTAAACATAAGA
* *
38478100 TAGTTCGTCA-T-GACACTAAACATGAAGAAGTCTACTGGGACACTAAACATGAGA
1 AAG-TC--CACTGGACACTAAACATGAAGAAGTCTACTGGGACACTAAACATAAGA
38478154 AAGTCCACTGGGACACTAAA
1 AAGTCCACT-GGACACTAAA
38478174 ACACAGAGAT
Statistics
Matches: 62, Mismatches: 6, Indels: 12
0.77 0.08 0.15
Matches are distributed among these distances:
51 2 0.03
52 1 0.02
53 2 0.03
54 53 0.85
55 2 0.03
57 2 0.03
ACGTcount: A:0.41, C:0.20, G:0.20, T:0.19
Consensus pattern (53 bp):
AAGTCCACTGGACACTAAACATGAAGAAGTCTACTGGGACACTAAACATAAGA
Found at i:38480795 original size:27 final size:27
Alignment explanation
Indices: 38480766--38480937 Score: 227
Period size: 27 Copynumber: 6.4 Consensus size: 27
38480756 CCCCAAAATA
* * *
38480766 GGTAAAATAACCGTAATGCCCCTATAA
1 GGTAAAATGACCGTAATGCCCCTGTAG
* *
38480793 GGTAAAATGATCATAATGCCCCTGTAG
1 GGTAAAATGACCGTAATGCCCCTGTAG
* *
38480820 GGTAAAATGACAGTAATGCCCCTATAG
1 GGTAAAATGACCGTAATGCCCCTGTAG
* *
38480847 GGTAAAATGACTGTAATACCCCTGTAG
1 GGTAAAATGACCGTAATGCCCCTGTAG
* *
38480874 GGTAAAATGACTGTAATGCCCTTGTAG
1 GGTAAAATGACCGTAATGCCCCTGTAG
* *
38480901 GGTAAAATGACCGTAATACCCCTGTAT
1 GGTAAAATGACCGTAATGCCCCTGTAG
38480928 GGTAAAATGA
1 GGTAAAATGA
38480938 TGATTATGCC
Statistics
Matches: 127, Mismatches: 18, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 127 1.00
ACGTcount: A:0.35, C:0.18, G:0.22, T:0.25
Consensus pattern (27 bp):
GGTAAAATGACCGTAATGCCCCTGTAG
Found at i:38480960 original size:34 final size:34
Alignment explanation
Indices: 38480922--38480996 Score: 141
Period size: 34 Copynumber: 2.2 Consensus size: 34
38480912 CGTAATACCC
38480922 CTGTATGGTAAAATGATGATTATGCCCTTATGTT
1 CTGTATGGTAAAATGATGATTATGCCCTTATGTT
38480956 CTGTATGGTAAAATGATGATTATGCCCTTATGTT
1 CTGTATGGTAAAATGATGATTATGCCCTTATGTT
*
38480990 CCGTATG
1 CTGTATG
38480997 ACTGATGTGC
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
34 40 1.00
ACGTcount: A:0.25, C:0.13, G:0.21, T:0.40
Consensus pattern (34 bp):
CTGTATGGTAAAATGATGATTATGCCCTTATGTT
Found at i:38481381 original size:33 final size:34
Alignment explanation
Indices: 38481330--38481394 Score: 96
Period size: 33 Copynumber: 1.9 Consensus size: 34
38481320 CCACATTGTT
*
38481330 ACTGTATAGGGCTAAGGCCCAGACTG-TACTGAC
1 ACTGAATAGGGCTAAGGCCCAGACTGTTACTGAC
* *
38481363 ACTGAATAGGGCTCAGGCCTAGACTGTTACTG
1 ACTGAATAGGGCTAAGGCCCAGACTGTTACTG
38481395 CATGCACTGT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
33 23 0.82
34 5 0.18
ACGTcount: A:0.26, C:0.23, G:0.28, T:0.23
Consensus pattern (34 bp):
ACTGAATAGGGCTAAGGCCCAGACTGTTACTGAC
Found at i:38485993 original size:72 final size:72
Alignment explanation
Indices: 38485876--38486020 Score: 245
Period size: 72 Copynumber: 2.0 Consensus size: 72
38485866 CCTATTTTCA
*
38485876 TACCACACGGTTGAGCACACAGACATGTCGCTCGAATATGTGTGACACATGGCCTTGGTACACGG
1 TACCACACGGTTGAACACACAGACATGTCGCTCGAATATGTGTGACACATGGCCTTGGTACACGG
38485941 CCGTGTG
66 CCGTGTG
* * * *
38485948 TACCACATGGTTGAACACACGGACATGTGGCTCGACTATGTGTGACACATGGCCTTGGTACACGG
1 TACCACACGGTTGAACACACAGACATGTCGCTCGAATATGTGTGACACATGGCCTTGGTACACGG
38486013 CCGTGTG
66 CCGTGTG
38486020 T
1 T
38486021 CCCCTGTATA
Statistics
Matches: 68, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
72 68 1.00
ACGTcount: A:0.23, C:0.26, G:0.28, T:0.23
Consensus pattern (72 bp):
TACCACACGGTTGAACACACAGACATGTCGCTCGAATATGTGTGACACATGGCCTTGGTACACGG
CCGTGTG
Found at i:38492712 original size:31 final size:31
Alignment explanation
Indices: 38492671--38492734 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
38492661 CCTTTTCATA
*
38492671 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
**
38492702 TTTCAAATTTCATATTACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
38492733 TT
1 TT
38492735 ACGGTAAATG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.36
Consensus pattern (31 bp):
TTTCAAATTTCATAACACTGGGCCGAAGCCT
Found at i:38492982 original size:24 final size:24
Alignment explanation
Indices: 38492931--38493097 Score: 257
Period size: 24 Copynumber: 7.0 Consensus size: 24
38492921 GCTTTATCAT
* *
38492931 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTG
* **
38492956 ATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTG
38492980 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTG
38493003 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
38493027 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
38493051 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
38493075 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
38493098 TCACTTCCTC
Statistics
Matches: 135, Mismatches: 5, Indels: 5
0.93 0.03 0.03
Matches are distributed among these distances:
23 23 0.17
24 100 0.74
25 12 0.09
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTG
Found at i:38493031 original size:71 final size:71
Alignment explanation
Indices: 38492930--38493097 Score: 257
Period size: 71 Copynumber: 2.3 Consensus size: 71
38492920 TGCTTTATCA
*
38492930 TATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATA
1 TATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATA
38492994 AGCCCTTT
64 AGCCCTTT
* * **
38493002 TATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAG
1 TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAAG
38493067 CCCTTT
66 CCCTTT
38493073 TGATAACTGGGGCATAAGCCCTTTT
1 T-ATAACTGGGGCATAAGCCCTTTT
38493098 TCACTTCCTC
Statistics
Matches: 89, Mismatches: 5, Indels: 4
0.91 0.05 0.04
Matches are distributed among these distances:
71 53 0.60
72 36 0.40
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.29
Consensus pattern (71 bp):
TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAAG
CCCTTT
Found at i:38493172 original size:20 final size:20
Alignment explanation
Indices: 38493147--38493207 Score: 104
Period size: 20 Copynumber: 3.0 Consensus size: 20
38493137 TTATGATTAC
38493147 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
38493167 ATCATGTGCACATCATACAT
1 ATCATGTGCATATCATACAT
*
38493187 TTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
38493207 A
1 A
38493208 CCATATTTAT
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 37 1.00
ACGTcount: A:0.34, C:0.21, G:0.10, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:38493282 original size:25 final size:25
Alignment explanation
Indices: 38493250--38493297 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
38493240 ATACATAAAC
* * *
38493250 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
38493275 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
38493298 CATGGTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:38494569 original size:27 final size:27
Alignment explanation
Indices: 38494539--38494733 Score: 259
Period size: 27 Copynumber: 7.2 Consensus size: 27
38494529 GGGTATTTTA
*
38494539 GTAATTTTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
38494566 GTAATTCTGTAAATCAAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
38494593 GTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
38494620 GTAATTCTGTAAAT-TAGGGGTAAAACG
1 GTAATTCTGTAAATCGA-GGGTAAAACG
* * **
38494647 GTAATTTTATAAATCGAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
38494674 GTAATTCTGTAAA-CTGAGGGTAATACG
1 GTAATTCTGTAAATC-GAGGGTAAAACG
38494701 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
38494728 GTAATT
1 GTAATT
38494734 TTACAAACTA
Statistics
Matches: 143, Mismatches: 21, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
26 2 0.01
27 139 0.97
28 2 0.01
ACGTcount: A:0.39, C:0.08, G:0.23, T:0.30
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAACG
Found at i:38494748 original size:27 final size:27
Alignment explanation
Indices: 38494539--38494776 Score: 128
Period size: 27 Copynumber: 8.8 Consensus size: 27
38494529 GGGTATTTTA
* *
38494539 GTAATTTTGTAAA-TCGAGGGTAAAACG
1 GTAATTTTATAAACTAG-GGGTAAAACG
* * * *
38494566 GTAATTCTGTAAA-TCAAGGGTAAAACA
1 GTAATTTTATAAACT-AGGGGTAAAACG
* * *
38494593 GTAATTCTATAAA-TCGAGGGTAAAATG
1 GTAATTTTATAAACTAG-GGGTAAAACG
* * *
38494620 GTAATTCTGTAAATTAGGGGTAAAACG
1 GTAATTTTATAAACTAGGGGTAAAACG
* **
38494647 GTAATTTTATAAA-TCGAGGGTAAAATA
1 GTAATTTTATAAACTAG-GGGTAAAACG
* * *
38494674 GTAATTCTGTAAACT-GAGGGTAATACG
1 GTAATTTTATAAACTAG-GGGTAAAACG
* * *
38494701 GTAATTCTGTAAA-TCGAGGGTAAAACG
1 GTAATTTTATAAACTAG-GGGTAAAACG
* ****
38494728 GTAATTTTACAAACTAGGGGTATTTTG
1 GTAATTTTATAAACTAGGGGTAAAACG
* *
38494755 ATAATTTTACAAACTAGGGGTA
1 GTAATTTTATAAACTAGGGGTA
38494777 TTTTGGTAAT
Statistics
Matches: 172, Mismatches: 32, Indels: 14
0.79 0.15 0.06
Matches are distributed among these distances:
26 3 0.02
27 164 0.95
28 5 0.03
ACGTcount: A:0.38, C:0.08, G:0.23, T:0.31
Consensus pattern (27 bp):
GTAATTTTATAAACTAGGGGTAAAACG
Found at i:38494795 original size:27 final size:27
Alignment explanation
Indices: 38494727--38494789 Score: 117
Period size: 27 Copynumber: 2.3 Consensus size: 27
38494717 AGGGTAAAAC
38494727 GGTAATTTTACAAACTAGGGGTATTTT
1 GGTAATTTTACAAACTAGGGGTATTTT
*
38494754 GATAATTTTACAAACTAGGGGTATTTT
1 GGTAATTTTACAAACTAGGGGTATTTT
38494781 GGTAATTTT
1 GGTAATTTT
38494790 GTAAACCAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.30, C:0.06, G:0.21, T:0.43
Consensus pattern (27 bp):
GGTAATTTTACAAACTAGGGGTATTTT
Found at i:38500848 original size:145 final size:145
Alignment explanation
Indices: 38500557--38500848 Score: 478
Period size: 145 Copynumber: 2.0 Consensus size: 145
38500547 GTACTTGGGC
* *
38500557 CAATTTGACCCCCTTATTAAACATAAACAATTAAAGTTAACATTAAAAACAAAAATTAAAGTGAA
1 CAATTTGACCCCCTTATTAAACATAAACAATTAAAGCTAACATTAAAAACAAAAATAAAAGTGAA
* * * *
38500622 AAATAAAAATTTTAAAATTCATCAGAAAATTTCTTCTCAAAGATTACATTAAATTAGTGCCCAGG
66 AAATAAAAATTTTAAAATTAATCAGAAAATTTCTTCTAAAAGATTACATCAAATTAATGCCCAGG
*
38500687 AAAGGTTGGAGGGGT
131 AAAGGTTGGAGAGGT
* *
38500702 CAATTTGACCCCCTTATTAAACATAAACAATTAAAGCTAACATTAAAAATAGAAATAAAAGTGAA
1 CAATTTGACCCCCTTATTAAACATAAACAATTAAAGCTAACATTAAAAACAAAAATAAAAGTGAA
*
38500767 AAATAAAAATTTTAAACTTAATCAGAAAATTTCTTCTTAAAAGATTACATCAAATTAATGCCCAG
66 AAATAAAAATTTTAAAATTAATCAGAAAATTTCTTC-TAAAAGATTACATCAAATTAATGCCCAG
38500832 GAAAGGTTGGA-AGGT
130 GAAAGGTTGGAGAGGT
38500847 CA
1 CA
38500849 CAATGGTTCC
Statistics
Matches: 136, Mismatches: 10, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
145 100 0.74
146 36 0.26
ACGTcount: A:0.47, C:0.13, G:0.12, T:0.28
Consensus pattern (145 bp):
CAATTTGACCCCCTTATTAAACATAAACAATTAAAGCTAACATTAAAAACAAAAATAAAAGTGAA
AAATAAAAATTTTAAAATTAATCAGAAAATTTCTTCTAAAAGATTACATCAAATTAATGCCCAGG
AAAGGTTGGAGAGGT
Found at i:38503182 original size:24 final size:24
Alignment explanation
Indices: 38503155--38503217 Score: 126
Period size: 24 Copynumber: 2.6 Consensus size: 24
38503145 CTTATTATGT
38503155 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
38503179 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
38503203 TCGCACACATAGTGC
1 TCGCACACATAGTGC
38503218 ATTTGAGATT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 39 1.00
ACGTcount: A:0.35, C:0.27, G:0.17, T:0.21
Consensus pattern (24 bp):
TCGCACACATAGTGCCATAGTAAA
Found at i:38507528 original size:40 final size:40
Alignment explanation
Indices: 38507442--38507629 Score: 252
Period size: 40 Copynumber: 4.7 Consensus size: 40
38507432 TGAATGATAC
* * * * *
38507442 CCGGGCTAAGCCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTG-CTATAT
* *
38507482 CTGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGCTATCT
1 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
*
38507522 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
* * *
38507562 CCGGGCTAAGACCTGAAGGCATTTGTGCGAGTTGCTATAC
1 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
*
38507602 CCGGGTTAAGACCCGAAGGCAATTGTGC
1 CCGGGTTAAGACCCGAAGGCATTTGTGC
38507630 TTGCGGTTAT
Statistics
Matches: 130, Mismatches: 17, Indels: 2
0.87 0.11 0.01
Matches are distributed among these distances:
40 128 0.98
41 2 0.02
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (40 bp):
CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
Found at i:38507639 original size:80 final size:80
Alignment explanation
Indices: 38507438--38507649 Score: 293
Period size: 80 Copynumber: 2.7 Consensus size: 80
38507428 CAATTGAATG
* * * * * *
38507438 ATACCCGGGCTAAGCCCCGAAGGCATTTATGCTAGTGATTATATCTGGGTTAAGACCCGAAGGCA
1 ATACCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGGTTATATCCGGGCTAAGACCCGAAGGCA
38507503 TTTGTGCGAGTTGCT
66 TTTGTGCGAGTTGCT
* * *
38507518 AT-CTCCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCCGGGCTAAGACCTGAAGGC
1 ATAC-CCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGGTTATATCCGGGCTAAGACCCGAAGGC
38507582 ATTTGTGCGAGTTGCT
65 ATTTGTGCGAGTTGCT
* * *
38507598 ATACCCGGGTTAAGACCCGAAGGCAATTGTGCTTGCGGTTATATCC-GGCTAA
1 ATACCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGGTTATATCCGGGCTAA
38507650 ATTCCGAAGA
Statistics
Matches: 116, Mismatches: 14, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
79 7 0.06
80 108 0.93
81 1 0.01
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.27
Consensus pattern (80 bp):
ATACCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGGTTATATCCGGGCTAAGACCCGAAGGCA
TTTGTGCGAGTTGCT
Found at i:38515491 original size:25 final size:26
Alignment explanation
Indices: 38515449--38515519 Score: 76
Period size: 25 Copynumber: 2.8 Consensus size: 26
38515439 AGCTGTAAAT
* * *
38515449 GGTAAGCTCCTCCGAGCTGAA-TAGC
1 GGTAAGCTCATACAAGCTGAAGTAGC
*
38515474 GGTAAGCTCATACAAGCT-AAGTATC
1 GGTAAGCTCATACAAGCTGAAGTAGC
38515499 GGTAAGCTCATA-AGAGCTGAA
1 GGTAAGCTCATACA-AGCTGAA
38515520 ATCAGTAATG
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
24 3 0.08
25 34 0.87
26 2 0.05
ACGTcount: A:0.32, C:0.21, G:0.25, T:0.21
Consensus pattern (26 bp):
GGTAAGCTCATACAAGCTGAAGTAGC
Found at i:38516367 original size:20 final size:21
Alignment explanation
Indices: 38516332--38516372 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
38516322 AAGATGATAC
*
38516332 TTGTCTTTATTTTACTAAATT
1 TTGTCTTTACTTTACTAAATT
*
38516353 TTGTCTTT-CTTTACTTAATT
1 TTGTCTTTACTTTACTAAATT
38516373 ACTTATTTAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 10 0.56
21 8 0.44
ACGTcount: A:0.20, C:0.12, G:0.05, T:0.63
Consensus pattern (21 bp):
TTGTCTTTACTTTACTAAATT
Found at i:38517781 original size:20 final size:20
Alignment explanation
Indices: 38517741--38517781 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 20
38517731 CACCTTAAGG
38517741 ATTAATTTGGTAGAGTCTGT
1 ATTAATTTGGTAGAGTCTGT
*
38517761 ATTAAGTTTGGTTGAGT-TGT
1 ATTAA-TTTGGTAGAGTCTGT
38517781 A
1 A
38517782 AACACTGCTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 9 0.47
21 10 0.53
ACGTcount: A:0.24, C:0.02, G:0.27, T:0.46
Consensus pattern (20 bp):
ATTAATTTGGTAGAGTCTGT
Found at i:38519465 original size:43 final size:42
Alignment explanation
Indices: 38519363--38519474 Score: 143
Period size: 43 Copynumber: 2.6 Consensus size: 42
38519353 TAAGATTACG
* * *
38519363 TGTAAGACCATATCTAGGATATGGAATCAATACGAGACTTCA
1 TGTAAGACCATATCTGGGATATGGCATCAATACCAGACTTCA
* * * * *
38519405 TGTAAGACCATAGCTGGGCTATTGGCATCGATACCAGATTTTA
1 TGTAAGACCATATCTGGGATA-TGGCATCAATACCAGACTTCA
38519448 TGTAAGACCATATCTGGGATATGGCAT
1 TGTAAGACCATATCTGGGATATGGCAT
38519475 TGGTATGGTA
Statistics
Matches: 59, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
42 24 0.41
43 35 0.59
ACGTcount: A:0.32, C:0.17, G:0.22, T:0.29
Consensus pattern (42 bp):
TGTAAGACCATATCTGGGATATGGCATCAATACCAGACTTCA
Found at i:38526249 original size:46 final size:46
Alignment explanation
Indices: 38526199--38526309 Score: 177
Period size: 46 Copynumber: 2.4 Consensus size: 46
38526189 TTTCTGTATG
*
38526199 TGTTGCAGACTCGAGAATACAGGAATAGGTTCTGAGCTCTTACATA
1 TGTTGCAGACTCGAGAATACAGGAATAGGTTCTGAGCTCCTACATA
*
38526245 TGTTGCAGACTCGAGAATACAGGAATAGGTTCTGAGCTCCTGCATA
1 TGTTGCAGACTCGAGAATACAGGAATAGGTTCTGAGCTCCTACATA
* * *
38526291 TGCTACAGACTTGAGAATA
1 TGTTGCAGACTCGAGAATA
38526310 TATGAATATT
Statistics
Matches: 60, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
46 60 1.00
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27
Consensus pattern (46 bp):
TGTTGCAGACTCGAGAATACAGGAATAGGTTCTGAGCTCCTACATA
Found at i:38542231 original size:40 final size:39
Alignment explanation
Indices: 38542050--38542201 Score: 250
Period size: 39 Copynumber: 3.9 Consensus size: 39
38542040 AATGTTCGAG
38542050 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
38542089 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
* * * *
38542128 TGATACCCGGGCTAAGGCCGAAGGCAATTGTGCGAGTTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
*
38542167 TGATATCCGGGCTAAGTCCCGAAGGCATTTGTGCG
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCG
38542202 GGTTACCATA
Statistics
Matches: 105, Mismatches: 7, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
39 89 0.85
40 16 0.15
ACGTcount: A:0.24, C:0.22, G:0.32, T:0.22
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
Found at i:38544324 original size:10 final size:10
Alignment explanation
Indices: 38544311--38544358 Score: 60
Period size: 10 Copynumber: 4.8 Consensus size: 10
38544301 TTATTTTCAT
38544311 TTATCTTTAA
1 TTATCTTTAA
38544321 TTATCTTTAA
1 TTATCTTTAA
*
38544331 TTATCTTTAT
1 TTATCTTTAA
* * *
38544341 TTATGTGTAT
1 TTATCTTTAA
38544351 TTATCTTT
1 TTATCTTT
38544359 TAGAATTTAA
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
10 33 1.00
ACGTcount: A:0.23, C:0.08, G:0.04, T:0.65
Consensus pattern (10 bp):
TTATCTTTAA
Found at i:38544678 original size:35 final size:35
Alignment explanation
Indices: 38544632--38544702 Score: 115
Period size: 35 Copynumber: 2.0 Consensus size: 35
38544622 TCTCAAAGAA
*
38544632 TATTCATTGTTTCTTTGCATTACAAGGCTAATACT
1 TATTCATTGTTTCTTCGCATTACAAGGCTAATACT
**
38544667 TATTCATTGTTTCTTCGCATTACGGGGCTAATACT
1 TATTCATTGTTTCTTCGCATTACAAGGCTAATACT
38544702 T
1 T
38544703 TCGTCCATGT
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.23, C:0.18, G:0.14, T:0.45
Consensus pattern (35 bp):
TATTCATTGTTTCTTCGCATTACAAGGCTAATACT
Found at i:38550014 original size:5 final size:5
Alignment explanation
Indices: 38549999--38550046 Score: 64
Period size: 5 Copynumber: 9.8 Consensus size: 5
38549989 AACTCAATTT
*
38549999 TTTTA -TTTA TTTTA TTTTA TTTTA TTTTA TTATT- TATTA TTTTA TTTT
1 TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TT-TTA TTTTA TTTTA TTTT
38550047 TAGATGTTGA
Statistics
Matches: 38, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
4 6 0.16
5 30 0.79
6 2 0.05
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (5 bp):
TTTTA
Found at i:38550256 original size:75 final size:75
Alignment explanation
Indices: 38550129--38550288 Score: 212
Period size: 75 Copynumber: 2.1 Consensus size: 75
38550119 AAAAAAAATA
* * * * *
38550129 CAGCCAAACAGCCTTTATTTCATCCCTATTTTAGCCCAGAATAGTGCTTTCCTGCCCTAGACTCC
1 CAGCCAAACAGCCTTTATTCCATCCATATTCTAGCCCAGAATAGTGCGTTCCTACCCTAGACTCC
38550194 CCAAAACCTG
66 CCAAAACCTG
* * *** *
38550204 CAGCCAAATAGCTTTTATTCCATCCATATTCTAGCTTGGAATAGTGCGTTCCTACTCTAGACTCC
1 CAGCCAAACAGCCTTTATTCCATCCATATTCTAGCCCAGAATAGTGCGTTCCTACCCTAGACTCC
38550269 CCAAAACCTG
66 CCAAAACCTG
*
38550279 CAACCAAACA
1 CAGCCAAACA
38550289 CCCCCTTTCA
Statistics
Matches: 72, Mismatches: 13, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
75 72 1.00
ACGTcount: A:0.28, C:0.33, G:0.12, T:0.28
Consensus pattern (75 bp):
CAGCCAAACAGCCTTTATTCCATCCATATTCTAGCCCAGAATAGTGCGTTCCTACCCTAGACTCC
CCAAAACCTG
Found at i:38552860 original size:4 final size:4
Alignment explanation
Indices: 38552851--38552880 Score: 60
Period size: 4 Copynumber: 7.5 Consensus size: 4
38552841 TAAGCAAAAA
38552851 AATT AATT AATT AATT AATT AATT AATT AA
1 AATT AATT AATT AATT AATT AATT AATT AA
38552881 AAAAAGAGAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 26 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (4 bp):
AATT
Found at i:38553529 original size:10 final size:10
Alignment explanation
Indices: 38553516--38553563 Score: 62
Period size: 10 Copynumber: 4.8 Consensus size: 10
38553506 TTATTTTCAT
38553516 TTATCTTTAA
1 TTATCTTTAA
38553526 TTATCTTTAA
1 TTATCTTTAA
*
38553536 TTATCTTTAT
1 TTATCTTTAA
*
38553546 TTAT-TTGTAT
1 TTATCTT-TAA
38553556 TTATCTTT
1 TTATCTTT
38553564 TAGAATTTAA
Statistics
Matches: 35, Mismatches: 1, Indels: 4
0.88 0.03 0.10
Matches are distributed among these distances:
9 2 0.06
10 31 0.89
11 2 0.06
ACGTcount: A:0.23, C:0.08, G:0.02, T:0.67
Consensus pattern (10 bp):
TTATCTTTAA
Found at i:38554335 original size:38 final size:37
Alignment explanation
Indices: 38554288--38554359 Score: 117
Period size: 38 Copynumber: 1.9 Consensus size: 37
38554278 ATTTTCGAAA
38554288 TTCCAATCAAAACTTTTAATTCTGTTTTATTTTATTT
1 TTCCAATCAAAACTTTTAATTCTGTTTTATTTTATTT
* *
38554325 TTCCAGATCAAAACTTTTAATTTTGTTTTTTTTTA
1 TTCCA-ATCAAAACTTTTAATTCTGTTTTATTTTA
38554360 ATACTTTTCT
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
37 5 0.16
38 27 0.84
ACGTcount: A:0.26, C:0.12, G:0.04, T:0.57
Consensus pattern (37 bp):
TTCCAATCAAAACTTTTAATTCTGTTTTATTTTATTT
Found at i:38559813 original size:47 final size:47
Alignment explanation
Indices: 38559744--38560066 Score: 215
Period size: 47 Copynumber: 6.8 Consensus size: 47
38559734 AGGGTATAAT
* * *
38559744 GTCGATACCATGTCCCAAACATGGTCTTACACTGGCTCATCCATCAA
1 GTCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCATCCATCAA
* * * *
38559791 GTCGATGCCATGACCCAGACATGGTCTTACACTAACT-ATCAAAATCGAG
1 GTCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCATC--CATC-AA
* * *
38559840 GCCGACGCCATGTCCCAGACATGGTCTTACACTAGCTC-TCACATGTCTAT
1 GTCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCATC-CA--TC-AA
* * * *
38559890 GACGATGCCATGTCCCAGACATGGTATTACACT-GACACATCTAGT--A
1 GTCGATGCCATGTCCCAGACATGGTCTTACACTAG-CTCATCCA-TCAA
* * * * *
38559936 GCCGATG-CATGTCCCAAACAT-GTCTTACACTAGCACTTGTC-TCAA
1 GTCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCAT-CCATCAA
*
38559981 -TGCAGATGCCATGTCCCAGACATGGTCTTACACTGGCTC--CCAT-AA
1 GT-C-GATGCCATGTCCCAGACATGGTCTTACACTAGCTCATCCATCAA
*
38560026 TGTGGCCAATG-CATGTCCCAGACAT-GTCTTACACTAGCTCA
1 -GT---CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCA
38560067 CACAAGTGAC
Statistics
Matches: 220, Mismatches: 34, Indels: 44
0.74 0.11 0.15
Matches are distributed among these distances:
43 1 0.00
44 13 0.06
45 19 0.09
46 28 0.13
47 60 0.27
48 21 0.10
49 40 0.18
50 36 0.16
51 2 0.01
ACGTcount: A:0.27, C:0.30, G:0.18, T:0.25
Consensus pattern (47 bp):
GTCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCATCCATCAA
Found at i:38559861 original size:49 final size:50
Alignment explanation
Indices: 38559751--38559922 Score: 156
Period size: 49 Copynumber: 3.5 Consensus size: 50
38559741 AATGTCGATA
* ** * * *
38559751 CCATGTCCCAAACATGGTCTTACACTGGCTCATC-C--ATC-AAGTCGATG
1 CCATGTCCCAGACATGGTCTTACACTAACT-ATCACAAATCGAGGACGACG
* *
38559798 CCATGACCCAGACATGGTCTTACACTAACTATCA-AAATCGAGGCCGACG
1 CCATGTCCCAGACATGGTCTTACACTAACTATCACAAATCGAGGACGACG
* * ** * * *
38559847 CCATGTCCCAGACATGGTCTTACACTAGCTCTCACATGTCTATGACGATG
1 CCATGTCCCAGACATGGTCTTACACTAACTATCACAAATCGAGGACGACG
*
38559897 CCATGTCCCAGACATGGTATTACACT
1 CCATGTCCCAGACATGGTCTTACACT
38559923 GACACATCTA
Statistics
Matches: 103, Mismatches: 17, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
46 3 0.03
47 26 0.25
48 3 0.03
49 37 0.36
50 34 0.33
ACGTcount: A:0.27, C:0.31, G:0.17, T:0.24
Consensus pattern (50 bp):
CCATGTCCCAGACATGGTCTTACACTAACTATCACAAATCGAGGACGACG
Found at i:38559940 original size:96 final size:98
Alignment explanation
Indices: 38559751--38560015 Score: 272
Period size: 96 Copynumber: 2.8 Consensus size: 98
38559741 AATGTCGATA
* * *
38559751 CCATGTCCCAAACATGGTCTTACACTGGCTCATC-CA--TC-AAGTCGATGCCATGACCCAGACA
1 CCATGTCCCAAACATGGTCTTACACTAGCTC-TCACATGTCTATG-CGATGCCATGTCCCAGACA
38559812 TGGTCTTACACT-AACTATCAAAATCGAGGCCGACG
64 TGGTCTTACACTGAACTATCAAAATC-AGGCCGACG
*
38559847 CCATGTCCCAGACATGGTCTTACACTAGCTCTCACATGTCTATGACGATGCCATGTCCCAGACAT
1 CCATGTCCCAAACATGGTCTTACACTAGCTCTCACATGTCTATG-CGATGCCATGTCCCAGACAT
* * * *
38559912 GGTATTACACTGACAC-ATC-TAGT-A-GCCGATG
65 GGTCTTACACTGA-ACTATCAAAATCAGGCCGACG
*
38559943 -CATGTCCCAAACAT-GTCTTACACTAG----CACTTGTCTCAATGCAGATGCCATGTCCCAGAC
1 CCATGTCCCAAACATGGTCTTACACTAGCTCTCACATGTCT--ATGC-GATGCCATGTCCCAGAC
38560002 ATGGTCTTACACTG
63 ATGGTCTTACACTG
38560016 GCTCCCATAA
Statistics
Matches: 148, Mismatches: 12, Indels: 22
0.81 0.07 0.12
Matches are distributed among these distances:
90 8 0.05
91 1 0.01
92 33 0.22
94 12 0.08
95 15 0.10
96 37 0.25
97 1 0.01
98 2 0.01
99 33 0.22
100 4 0.03
101 2 0.01
ACGTcount: A:0.27, C:0.30, G:0.18, T:0.25
Consensus pattern (98 bp):
CCATGTCCCAAACATGGTCTTACACTAGCTCTCACATGTCTATGCGATGCCATGTCCCAGACATG
GTCTTACACTGAACTATCAAAATCAGGCCGACG
Found at i:38560051 original size:94 final size:92
Alignment explanation
Indices: 38559793--38560063 Score: 273
Period size: 94 Copynumber: 2.9 Consensus size: 92
38559783 TCCATCAAGT
* * * * * *
38559793 CGATGCCATGACCCAGACATGGTCTTACACTAACT-ATCAAAATCGAGGCCGACGCCATGTCCCA
1 CGATGCCATGTCCCAGACATGGTCTTACACT-GCTCA-CATAATAGTGGCCGATG-CATGTCCCA
38559857 GACATGGTCTTACACTAGCTCTCACATGTCTATGA
63 GACAT-GTCTTACACTAG----CACATGTCTATGA
* * * * *
38559892 CGATGCCATGTCCCAGACATGGTATTACACTG-ACACAT-CTAGTAGCCGATGCATGTCCCAAAC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGCTCACATAATAGTGGCCGATGCATGTCCCAGAC
*
38559955 ATGTCTTACACTAGCACTTGTCTCAATG-
66 ATGTCTTACACTAGCACATGTCT--ATGA
* *
38559983 CAGATGCCATGTCCCAGACATGGTCTTACACTGGCTCCCATAAT-GTGGCCAATGCATGTCCCAG
1 C-GATGCCATGTCCCAGACATGGTCTTACACT-GCTCACATAATAGTGGCCGATGCATGTCCCAG
38560047 ACATGTCTTACACTAGC
64 ACATGTCTTACACTAGC
38560064 TCACACAAGT
Statistics
Matches: 146, Mismatches: 19, Indels: 19
0.79 0.10 0.10
Matches are distributed among these distances:
90 8 0.05
91 1 0.01
92 32 0.22
93 1 0.01
94 50 0.34
95 14 0.10
96 8 0.05
97 2 0.01
98 1 0.01
99 29 0.20
ACGTcount: A:0.27, C:0.30, G:0.18, T:0.25
Consensus pattern (92 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGCTCACATAATAGTGGCCGATGCATGTCCCAGAC
ATGTCTTACACTAGCACATGTCTATGA
Found at i:38561308 original size:20 final size:20
Alignment explanation
Indices: 38561283--38561368 Score: 68
Period size: 20 Copynumber: 4.3 Consensus size: 20
38561273 ACAGTTTGTA
38561283 CCCCTGTTAGCACTTCGGTG
1 CCCCTGTTAGCACTTCGGTG
*
38561303 CCCCTG-TATGCACTTTGGTG
1 CCCCTGTTA-GCACTTCGGTG
* * * * *
38561323 TCCCTGTTTGCTCGTCAGTG
1 CCCCTGTTAGCACTTCGGTG
* *
38561343 CCTCTGTTCA-CACTTTGGTG
1 CCCCTGTT-AGCACTTCGGTG
38561363 CCCCTG
1 CCCCTG
38561369 ACTGCATGTA
Statistics
Matches: 48, Mismatches: 15, Indels: 6
0.70 0.22 0.09
Matches are distributed among these distances:
19 2 0.04
20 45 0.94
21 1 0.02
ACGTcount: A:0.08, C:0.34, G:0.23, T:0.35
Consensus pattern (20 bp):
CCCCTGTTAGCACTTCGGTG
Found at i:38563124 original size:48 final size:47
Alignment explanation
Indices: 38563060--38563230 Score: 150
Period size: 48 Copynumber: 3.6 Consensus size: 47
38563050 ACAACAAGCT
* * *
38563060 GATGCCATATCCCAGACAAGTCTTACACTAGCATGTATCTCGCGAGGCC
1 GATG-CATGTCCCAGACATGTCTTACACTAGCATATATCTC-CGAGGCC
* * * ** * *
38563109 GATGTATGTCCCAGACATGTCTTATACTAGC-TCTCGC-CTCAATGCC
1 GATGCATGTCCCAGACATGTCTTACACTAGCATATATCTC-CGAGGCC
* * * *
38563155 GATGCATGTCCCAAACATGTCTTACACTGGCTTAAATATCTCAG-GGCC
1 GATGCATGTCCCAGACATGTCTTACACTAGC--ATATATCTCCGAGGCC
38563203 GATGCATGTCCCAGACATGTCTTACACT
1 GATGCATGTCCCAGACATGTCTTACACT
38563231 GGCTCTCATA
Statistics
Matches: 96, Mismatches: 22, Indels: 9
0.76 0.17 0.07
Matches are distributed among these distances:
46 33 0.34
47 3 0.03
48 53 0.55
49 6 0.06
50 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (47 bp):
GATGCATGTCCCAGACATGTCTTACACTAGCATATATCTCCGAGGCC
Found at i:38563254 original size:94 final size:94
Alignment explanation
Indices: 38563105--38563276 Score: 238
Period size: 94 Copynumber: 1.8 Consensus size: 94
38563095 TATCTCGCGA
* * *
38563105 GGCCGATGTATGTCCCAGACATGTCTTATACTAGCTCTCGCCTCAATGCCGATGCATGTCCCAAA
1 GGCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCGACTCAATGCCGATGCATGTCCCAAA
38563170 CATGTCTTACACTGGCTTAAATATCTCAG
66 CATGTCTTACACTGGCTTAAATATCTCAG
* * ** **
38563199 GGCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTCATACTGTA-GCTTATGCATGTCCCAA
1 GGCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTC-GACTCAATGCCGATGCATGTCCCAA
*
38563263 ACATGTCTTGCACT
65 ACATGTCTTACACT
38563277 AGCACACAAA
Statistics
Matches: 67, Mismatches: 10, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
94 64 0.96
95 3 0.04
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.29
Consensus pattern (94 bp):
GGCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCGACTCAATGCCGATGCATGTCCCAAA
CATGTCTTACACTGGCTTAAATATCTCAG
Found at i:38563268 original size:46 final size:47
Alignment explanation
Indices: 38563152--38563276 Score: 148
Period size: 48 Copynumber: 2.7 Consensus size: 47
38563142 TCGCCTCAAT
*
38563152 GCCGATGCATGTCCCAAACATGTCTTACACTGGCTTAAATATCTCAGG
1 GCCGATGCATGTCCCAAACATGTCTTACACTGGCTTAAATATCT-AGA
* *
38563200 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCT-CATA-CT-GTA
1 GCCGATGCATGTCCCAAACATGTCTTACACTGGCT-TAAATATCTAG-A
** *
38563246 GCTTATGCATGTCCCAAACATGTCTTGCACT
1 GCCGATGCATGTCCCAAACATGTCTTACACT
38563277 AGCACACAAA
Statistics
Matches: 68, Mismatches: 7, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
45 1 0.01
46 27 0.40
47 2 0.03
48 37 0.54
49 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.29
Consensus pattern (47 bp):
GCCGATGCATGTCCCAAACATGTCTTACACTGGCTTAAATATCTAGA
Found at i:38564794 original size:13 final size:13
Alignment explanation
Indices: 38564776--38564804 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
38564766 GGTCACACGG
38564776 CCAAGCCATACGC
1 CCAAGCCATACGC
38564789 CCAAGCCATACGC
1 CCAAGCCATACGC
38564802 CCA
1 CCA
38564805 TGTGCCAGGC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.31, C:0.48, G:0.14, T:0.07
Consensus pattern (13 bp):
CCAAGCCATACGC
Found at i:38566130 original size:26 final size:26
Alignment explanation
Indices: 38566101--38566162 Score: 90
Period size: 26 Copynumber: 2.3 Consensus size: 26
38566091 ATCCTCTCTC
38566101 GAGCCATATAA-CAAGAAACTCACAAA
1 GAGCCAT-TAATCAAGAAACTCACAAA
*
38566127 GAGCCATTAATCAGGAAACTCACAAA
1 GAGCCATTAATCAAGAAACTCACAAA
38566153 GAGCCTATTA
1 GAGCC-ATTA
38566163 GGAAGCTTAT
Statistics
Matches: 33, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
25 3 0.09
26 26 0.79
27 4 0.12
ACGTcount: A:0.47, C:0.23, G:0.15, T:0.16
Consensus pattern (26 bp):
GAGCCATTAATCAAGAAACTCACAAA
Found at i:38566235 original size:26 final size:26
Alignment explanation
Indices: 38566206--38566264 Score: 73
Period size: 26 Copynumber: 2.3 Consensus size: 26
38566196 ACAAGAGCCG
* *
38566206 TAATCAGGAAATTCACAAAAAACTTT
1 TAATCAGGAAACTCACAAAAAACCTT
* * *
38566232 TAATCAGGAAGCTCACGAAAAGCCTT
1 TAATCAGGAAACTCACAAAAAACCTT
38566258 TAATCAG
1 TAATCAG
38566265 TAGCTCCGAA
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.44, C:0.19, G:0.14, T:0.24
Consensus pattern (26 bp):
TAATCAGGAAACTCACAAAAAACCTT
Found at i:38567093 original size:21 final size:21
Alignment explanation
Indices: 38567069--38567110 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
38567059 AAGTTGTTTA
38567069 TCTATCAACAACCTTTTATTT
1 TCTATCAACAACCTTTTATTT
38567090 TCTATCAACAACCTTTTATTT
1 TCTATCAACAACCTTTTATTT
38567111 ATGATAAGCT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.29, C:0.24, G:0.00, T:0.48
Consensus pattern (21 bp):
TCTATCAACAACCTTTTATTT
Found at i:38582782 original size:13 final size:12
Alignment explanation
Indices: 38582748--38582798 Score: 52
Period size: 12 Copynumber: 4.2 Consensus size: 12
38582738 TTTTAGCAAG
38582748 TTTTTATTTTAGT
1 TTTTTATTTTA-T
*
38582761 CTTTTATTTTAT
1 TTTTTATTTTAT
*
38582773 TTTTTAATTT-T
1 TTTTTATTTTAT
38582784 TTTTTACTTTT-T
1 TTTTTA-TTTTAT
38582796 TTT
1 TTT
38582799 CAATAAAGGA
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
11 7 0.21
12 16 0.48
13 10 0.30
ACGTcount: A:0.14, C:0.04, G:0.02, T:0.80
Consensus pattern (12 bp):
TTTTTATTTTAT
Found at i:38584727 original size:25 final size:24
Alignment explanation
Indices: 38584674--38584727 Score: 56
Period size: 25 Copynumber: 2.2 Consensus size: 24
38584664 AATCATCTTA
* *
38584674 TTTTTTAAATTTGCTTTATTTCTT
1 TTTTTTAAATTTGCTTTAGTTATT
*
38584698 CTTTTTAGAATTT-CTTTTAGTTATT
1 TTTTTTA-AATTTGC-TTTAGTTATT
38584723 TTTTT
1 TTTTT
38584728 CAATAAAAGG
Statistics
Matches: 24, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
24 7 0.29
25 17 0.71
ACGTcount: A:0.17, C:0.07, G:0.06, T:0.70
Consensus pattern (24 bp):
TTTTTTAAATTTGCTTTAGTTATT
Found at i:38586315 original size:7 final size:7
Alignment explanation
Indices: 38586303--38586330 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
38586293 TCTATTTCAG
38586303 CAAACCA
1 CAAACCA
38586310 CAAACCA
1 CAAACCA
38586317 CAAACCA
1 CAAACCA
38586324 CAAACCA
1 CAAACCA
38586331 ACGGGCCACA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.57, C:0.43, G:0.00, T:0.00
Consensus pattern (7 bp):
CAAACCA
Found at i:38590370 original size:65 final size:65
Alignment explanation
Indices: 38590266--38590395 Score: 242
Period size: 65 Copynumber: 2.0 Consensus size: 65
38590256 CAAAAGTATA
* *
38590266 CTAAAATTAGAAATACAAAAAAACCCAATATCATCATTTTTACCTTTTTTCATCCTTTAATTTTG
1 CTAAAATTAAAAATACAAAAAAACCCAATATCATCATTTTTACCTTTTCTCATCCTTTAATTTTG
38590331 CTAAAATTAAAAATACAAAAAAACCCAATATCATCATTTTTACCTTTTCTCATCCTTTAATTTTG
1 CTAAAATTAAAAATACAAAAAAACCCAATATCATCATTTTTACCTTTTCTCATCCTTTAATTTTG
38590396 ATACTCTAAT
Statistics
Matches: 63, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
65 63 1.00
ACGTcount: A:0.39, C:0.19, G:0.02, T:0.39
Consensus pattern (65 bp):
CTAAAATTAAAAATACAAAAAAACCCAATATCATCATTTTTACCTTTTCTCATCCTTTAATTTTG
Found at i:38595714 original size:29 final size:29
Alignment explanation
Indices: 38595681--38595811 Score: 163
Period size: 29 Copynumber: 4.5 Consensus size: 29
38595671 TGACGAGATC
*
38595681 GGCACTAAGTGTGCGTGCTGGAAATATAT
1 GGCACTAAGTGTGCGTGCTGGAAAAATAT
* *
38595710 GGCACTAAGTGTGCGTGCTGGAAATATAA
1 GGCACTAAGTGTGCGTGCTGGAAAAATAT
*
38595739 GGCACTAAGTGTGCATGCTGGAAAAATAT
1 GGCACTAAGTGTGCGTGCTGGAAAAATAT
* * ** *
38595768 GACACTATGTGTGCAAGCTGGAAAAATAC
1 GGCACTAAGTGTGCGTGCTGGAAAAATAT
**
38595797 GGCACTGGGTGTGCG
1 GGCACTAAGTGTGCG
38595812 AGCTCGGAGG
Statistics
Matches: 90, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 90 1.00
ACGTcount: A:0.30, C:0.15, G:0.31, T:0.24
Consensus pattern (29 bp):
GGCACTAAGTGTGCGTGCTGGAAAAATAT
Found at i:38603694 original size:29 final size:29
Alignment explanation
Indices: 38603661--38603791 Score: 163
Period size: 29 Copynumber: 4.5 Consensus size: 29
38603651 TGACGAGATC
*
38603661 GGCACTAAGTGTGCGTGCTGGAAATATAT
1 GGCACTAAGTGTGCGTGCTGGAAAAATAT
* *
38603690 GGCACTAAGTGTGCGTGCTGGAAATATAA
1 GGCACTAAGTGTGCGTGCTGGAAAAATAT
*
38603719 GGCACTAAGTGTGCATGCTGGAAAAATAT
1 GGCACTAAGTGTGCGTGCTGGAAAAATAT
* * ** *
38603748 GACACTATGTGTGCAAGCTGGAAAAATAC
1 GGCACTAAGTGTGCGTGCTGGAAAAATAT
**
38603777 GGCACTGGGTGTGCG
1 GGCACTAAGTGTGCG
38603792 AGCTCGAGGG
Statistics
Matches: 90, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 90 1.00
ACGTcount: A:0.30, C:0.15, G:0.31, T:0.24
Consensus pattern (29 bp):
GGCACTAAGTGTGCGTGCTGGAAAAATAT
Found at i:38604214 original size:21 final size:21
Alignment explanation
Indices: 38604189--38604231 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
38604179 TTGTACATGT
38604189 TGTAGTAACTTTATCAGTGGA
1 TGTAGTAACTTTATCAGTGGA
38604210 TGTAGTAACTTTATCAGTGGA
1 TGTAGTAACTTTATCAGTGGA
38604231 T
1 T
38604232 TGATGAATGC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.28, C:0.09, G:0.23, T:0.40
Consensus pattern (21 bp):
TGTAGTAACTTTATCAGTGGA
Found at i:38606455 original size:29 final size:29
Alignment explanation
Indices: 38606422--38606551 Score: 163
Period size: 29 Copynumber: 4.5 Consensus size: 29
38606412 TGACGAGATC
38606422 GGCACTAAGTGTGCGTGCTGGAAATATAT
1 GGCACTAAGTGTGCGTGCTGGAAATATAT
*
38606451 GGCACTAAGTGTGCGTGCTGGAAATATAA
1 GGCACTAAGTGTGCGTGCTGGAAATATAT
*
38606480 GGCACTAAGTGTGCATGCTGGAAA-ATAT
1 GGCACTAAGTGTGCGTGCTGGAAATATAT
* * ** * *
38606508 GACACTATGTGTGCAAGCTGGAAAAATAC
1 GGCACTAAGTGTGCGTGCTGGAAATATAT
**
38606537 GGCACTGGGTGTGCG
1 GGCACTAAGTGTGCG
38606552 AGCTCGGAGG
Statistics
Matches: 89, Mismatches: 11, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
28 24 0.27
29 65 0.73
ACGTcount: A:0.29, C:0.15, G:0.32, T:0.24
Consensus pattern (29 bp):
GGCACTAAGTGTGCGTGCTGGAAATATAT
Done.