Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr03 135709677
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 135709677
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 139 of 438
Found at i:41506296 original size:40 final size:40
Alignment explanation
Indices: 41506227--41506367 Score: 174
Period size: 40 Copynumber: 3.5 Consensus size: 40
41506217 CCAAGGCTTA
* * * * *
41506227 CGGGACTTAACCCGGATATCACGATTTGCACAAATGCCTT
1 CGGGTCTTAGCCCGGATATAACAACTTGCACAAATGCCTT
* *
41506267 CGGGTCTTAGCCCGGATTTAACAACTTGCACGAATGCCTT
1 CGGGTCTTAGCCCGGATATAACAACTTGCACAAATGCCTT
* * * *
41506307 CGGGTCTTAGCCCGGATATAGCTACTAGCACAATTGCCTT
1 CGGGTCTTAGCCCGGATATAACAACTTGCACAAATGCCTT
*
41506347 CGGGTCTTAACCCGGATATAA
1 CGGGTCTTAGCCCGGATATAA
41506368 TTTTCAGCAT
Statistics
Matches: 86, Mismatches: 15, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 86 1.00
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CGGGTCTTAGCCCGGATATAACAACTTGCACAAATGCCTT
Found at i:41506382 original size:40 final size:40
Alignment explanation
Indices: 41506254--41506405 Score: 164
Period size: 40 Copynumber: 3.8 Consensus size: 40
41506244 ATCACGATTT
* * * * *
41506254 GCACAAATGCCTTCGGGTCTTAGCCCGGATTTAACAACTT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAGCTACTA
41506294 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAGCTACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAGCTACTA
* * **
41506334 GCACAATTGCCTTCGGGTCTTAACCCGGATATA-ATTTTCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAGCTACT-A
* * *
41506374 GCATAATTGTCTTCGGGGCTTAGCCCGGATAT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
41506406 CATTCAATTT
Statistics
Matches: 97, Mismatches: 12, Indels: 6
0.84 0.10 0.05
Matches are distributed among these distances:
39 4 0.04
40 91 0.94
41 2 0.02
ACGTcount: A:0.23, C:0.26, G:0.22, T:0.29
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAGCTACTA
Found at i:41514310 original size:40 final size:40
Alignment explanation
Indices: 41514236--41514381 Score: 175
Period size: 40 Copynumber: 3.6 Consensus size: 40
41514226 CCGCACCAAG
* * * * * *
41514236 GCCTACGGGACTTAACCCGGATATCACGATTTGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
* *
41514276 GCCTTCGGGTCTTAGCCCGGATTTAACAACTTGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
* * * *
41514316 GCCTTCGGGTCTTAGCCCGGATATAGCTACTAGCACAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
*
41514356 GCCTTCGGGTCTTAACCCGGATATAA
1 GCCTTCGGGTCTTAGCCCGGATATAA
41514382 TTTTCAGCAT
Statistics
Matches: 90, Mismatches: 16, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 90 1.00
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
Found at i:41514396 original size:40 final size:40
Alignment explanation
Indices: 41514268--41514419 Score: 164
Period size: 40 Copynumber: 3.8 Consensus size: 40
41514258 ATCACGATTT
* * * * *
41514268 GCACAAATGCCTTCGGGTCTTAGCCCGGATTTAACAACTT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAGCTACTA
41514308 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAGCTACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAGCTACTA
* * **
41514348 GCACAATTGCCTTCGGGTCTTAACCCGGATATA-ATTTTCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAGCTACT-A
* * *
41514388 GCATAATTGTCTTCGGGGCTTAGCCCGGATAT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
41514420 CATTCAATTT
Statistics
Matches: 97, Mismatches: 12, Indels: 6
0.84 0.10 0.05
Matches are distributed among these distances:
39 4 0.04
40 91 0.94
41 2 0.02
ACGTcount: A:0.23, C:0.26, G:0.22, T:0.29
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAGCTACTA
Found at i:41516061 original size:16 final size:16
Alignment explanation
Indices: 41516011--41516129 Score: 76
Period size: 16 Copynumber: 7.2 Consensus size: 16
41516001 TGTCACACGT
*
41516011 ACATTACTACAGCTCAC
1 ACATTAC-ACAGCTCGC
* *
41516028 ACATTACATAGCTTGC
1 ACATTACACAGCTCGC
*
41516044 ACATTACACAACTCGC
1 ACATTACACAGCTCGC
* *** *
41516060 ACATCATTGTAGCTCAC
1 ACATTA-CACAGCTCGC
*
41516077 ACATTACACAGCTCAC
1 ACATTACACAGCTCGC
* * *
41516093 ACATCACTATAACTCGC
1 ACATTAC-ACAGCTCGC
* *
41516110 AAATTACACAGCTCAC
1 ACATTACACAGCTCGC
41516126 ACAT
1 ACAT
41516130 CATTATGACT
Statistics
Matches: 74, Mismatches: 26, Indels: 5
0.70 0.25 0.05
Matches are distributed among these distances:
16 46 0.62
17 28 0.38
ACGTcount: A:0.36, C:0.33, G:0.08, T:0.24
Consensus pattern (16 bp):
ACATTACACAGCTCGC
Found at i:41516073 original size:33 final size:33
Alignment explanation
Indices: 41516011--41516147 Score: 152
Period size: 33 Copynumber: 4.2 Consensus size: 33
41516001 TGTCACACGT
* * *
41516011 ACATTACTACAGCTCACACATTA-CATAGCTTGC
1 ACATTAC-ACAGCTCACACATCATTATAGCTCGC
* * * *
41516044 ACATTACACAACTCGCACATCATTGTAGCTCAC
1 ACATTACACAGCTCACACATCATTATAGCTCGC
* *
41516077 ACATTACACAGCTCACACATCACTATAACTCGC
1 ACATTACACAGCTCACACATCATTATAGCTCGC
*
41516110 AAATTACACAGCTCACACATCATTAT-GACTCGC
1 ACATTACACAGCTCACACATCATTATAG-CTCGC
41516143 ACATT
1 ACATT
41516148 GATATATACA
Statistics
Matches: 85, Mismatches: 17, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
32 12 0.14
33 73 0.86
ACGTcount: A:0.35, C:0.32, G:0.08, T:0.25
Consensus pattern (33 bp):
ACATTACACAGCTCACACATCATTATAGCTCGC
Found at i:41516147 original size:66 final size:66
Alignment explanation
Indices: 41516011--41516135 Score: 171
Period size: 66 Copynumber: 1.9 Consensus size: 66
41516001 TGTCACACGT
* * * * * *
41516011 ACATTACTACAGCTCACACATTACATAGCTTGCACATTACACAACTCGCACATCATTGTAGCTCA
1 ACATTACTACAGCTCACACATCACATAACTCGCAAATTACACAACTCACACATCATTATAGCTCA
41516076 C
66 C
*
41516077 ACATTAC-ACAGCTCACACATCACTATAACTCGCAAATTACACAGCTCACACATCATTAT
1 ACATTACTACAGCTCACACATCAC-ATAACTCGCAAATTACACAACTCACACATCATTAT
41516136 GACTCGCACA
Statistics
Matches: 51, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
65 15 0.29
66 36 0.71
ACGTcount: A:0.36, C:0.32, G:0.07, T:0.25
Consensus pattern (66 bp):
ACATTACTACAGCTCACACATCACATAACTCGCAAATTACACAACTCACACATCATTATAGCTCA
C
Found at i:41518603 original size:49 final size:49
Alignment explanation
Indices: 41518476--41518684 Score: 309
Period size: 49 Copynumber: 4.3 Consensus size: 49
41518466 CCCTTCGGGA
* * * * * *
41518476 CTTATCACAT-T-TATACACTTCCACATCCATCACTTTGGCCACTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
41518523 CCTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
41518570 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
41518619 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
41518668 CTTATCACATATATATA
1 CTTATCACATATATATA
41518685 TCTCATACAT
Statistics
Matches: 148, Mismatches: 10, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
46 1 0.01
47 45 0.30
49 102 0.69
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.33
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:41520047 original size:2 final size:2
Alignment explanation
Indices: 41520040--41520064 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
41520030 AATTCATTAT
41520040 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
41520065 CTAAACACTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:41522880 original size:24 final size:24
Alignment explanation
Indices: 41522850--41522898 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 24
41522840 AGTGCAATTT
* *
41522850 ATAAAAGGATTATAGTTGGAATTAA
1 ATAAAGGGATTAAAG-TGGAATTAA
*
41522875 ATAAAGGGGTTAAAGTGGAATTAA
1 ATAAAGGGATTAAAGTGGAATTAA
41522899 CCACTAAATC
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
24 9 0.43
25 12 0.57
ACGTcount: A:0.47, C:0.00, G:0.24, T:0.29
Consensus pattern (24 bp):
ATAAAGGGATTAAAGTGGAATTAA
Found at i:41522942 original size:2 final size:2
Alignment explanation
Indices: 41522935--41522972 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
41522925 TAGCATGTGC
41522935 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
41522973 GCATGGTATA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:41525834 original size:25 final size:25
Alignment explanation
Indices: 41525805--41525900 Score: 81
Period size: 25 Copynumber: 3.8 Consensus size: 25
41525795 GGTTACTGAT
* *
41525805 TTCAGCTCTTATGAGCTTACTATTA
1 TTCAGCTCTTAGGAGCTTACCATTA
*
41525830 TTCAG-T-TTGAAGGACCTTACCATTA
1 TTCAGCTCTT--AGGAGCTTACCATTA
**
41525855 TTCAGCTCGGAGGAGCTTACCATTA
1 TTCAGCTCTTAGGAGCTTACCATTA
* *
41525880 TTTAGCT-TGGAGGAGCTTACC
1 TTCAGCTCT-TAGGAGCTTACC
41525901 GTTTATAGCT
Statistics
Matches: 58, Mismatches: 8, Indels: 10
0.76 0.11 0.13
Matches are distributed among these distances:
23 2 0.03
24 1 0.02
25 54 0.93
26 1 0.02
ACGTcount: A:0.24, C:0.21, G:0.20, T:0.35
Consensus pattern (25 bp):
TTCAGCTCTTAGGAGCTTACCATTA
Found at i:41529412 original size:40 final size:40
Alignment explanation
Indices: 41529367--41529496 Score: 142
Period size: 40 Copynumber: 3.2 Consensus size: 40
41529357 CGGAATATAA
41529367 CCGGATATAAGCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAAGCATGTGCACAAATGCCTTCGGGTCTTAGC
* * *
41529407 CCGGATAGAATG-ACT-CGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA-GCA-TGTGCACAAATGCCTTCGGGTCTTAGC
* * *
41529447 CCGGATAT-AGC-CGCTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAAGCATG-T-GCACAAATGCCTTCGGGTCTTAGC
41529487 CCGGATATAA
1 CCGGATATAA
41529497 TTTCCAGCAT
Statistics
Matches: 74, Mismatches: 9, Indels: 13
0.77 0.09 0.14
Matches are distributed among these distances:
38 1 0.01
39 1 0.01
40 69 0.93
41 3 0.04
ACGTcount: A:0.25, C:0.27, G:0.25, T:0.24
Consensus pattern (40 bp):
CCGGATATAAGCATGTGCACAAATGCCTTCGGGTCTTAGC
Found at i:41529511 original size:40 final size:40
Alignment explanation
Indices: 41529383--41529533 Score: 155
Period size: 40 Copynumber: 3.8 Consensus size: 40
41529373 ATAAGCATGT
* * *
41529383 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCAC-CA
** * *
41529423 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAGCCGCTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCACCA
* **
41529463 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCACCA
* *
41529503 GCATAATTGTCTTCGGG-CTTAGCCCGGATAT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
41529534 CATTCAATTT
Statistics
Matches: 93, Mismatches: 15, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
39 15 0.16
40 76 0.82
41 2 0.02
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCACCA
Found at i:41529517 original size:80 final size:79
Alignment explanation
Indices: 41529383--41529533 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 79
41529373 ATAAGCATGT
*
41529383 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGG-CTTAGCC
41529448 CGGATATAGCCGCTA
65 CGGATATAGCCGCTA
* * ** * *
41529463 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGCTTAGC
41529526 CCGGATAT
64 CCGGATAT
41529534 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
79 17 0.27
80 45 0.73
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATAGCCGCTA
Found at i:41536501 original size:20 final size:22
Alignment explanation
Indices: 41536478--41536517 Score: 57
Period size: 20 Copynumber: 1.9 Consensus size: 22
41536468 ATATGCTTTG
41536478 ATTGAATTA-AAT-ATATATTA
1 ATTGAATTATAATCATATATTA
*
41536498 ATTGTATTATAATCATATAT
1 ATTGAATTATAATCATATAT
41536518 GATTACCGAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 8 0.47
21 3 0.18
22 6 0.35
ACGTcount: A:0.45, C:0.03, G:0.05, T:0.47
Consensus pattern (22 bp):
ATTGAATTATAATCATATATTA
Found at i:41536676 original size:25 final size:25
Alignment explanation
Indices: 41536630--41536737 Score: 96
Period size: 25 Copynumber: 4.3 Consensus size: 25
41536620 TCCCTCTTAT
*
41536630 GAGCTTACCGA-TACTT-AGCTCGTAT
1 GAGCTTACC-ATTA-TTCAGCTCGTAG
* *
41536655 GAGCTTACCATTATTCATCTCGGAG
1 GAGCTTACCATTATTCAGCTCGTAG
**
41536680 GAGCTTACTGTTATTCAGCTCAG-AG
1 GAGCTTACCATTATTCAGCTC-GTAG
* * *
41536705 GATCTTACCGTTATTCAGCTCGAAG
1 GAGCTTACCATTATTCAGCTCGTAG
41536730 GAGCTTAC
1 GAGCTTAC
41536738 TGTTTATAGC
Statistics
Matches: 70, Mismatches: 9, Indels: 8
0.80 0.10 0.09
Matches are distributed among these distances:
24 4 0.06
25 65 0.93
26 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.21, T:0.31
Consensus pattern (25 bp):
GAGCTTACCATTATTCAGCTCGTAG
Found at i:41536685 original size:50 final size:50
Alignment explanation
Indices: 41536630--41536737 Score: 121
Period size: 50 Copynumber: 2.2 Consensus size: 50
41536620 TCCCTCTTAT
* * *
41536630 GAGCTTACCGATACTT-AGCTC-GTATGAGCTTACCATTATTCATCTCGGAG
1 GAGCTTACCGATA-TTCAGCTCAG-AGGAGCTTACCATTATTCAGCTCGAAG
* * * *
41536680 GAGCTTACTGTTATTCAGCTCAGAGGATCTTACCGTTATTCAGCTCGAAG
1 GAGCTTACCGATATTCAGCTCAGAGGAGCTTACCATTATTCAGCTCGAAG
41536730 GAGCTTAC
1 GAGCTTAC
41536738 TGTTTATAGC
Statistics
Matches: 49, Mismatches: 7, Indels: 4
0.82 0.12 0.07
Matches are distributed among these distances:
49 2 0.04
50 46 0.94
51 1 0.02
ACGTcount: A:0.24, C:0.23, G:0.21, T:0.31
Consensus pattern (50 bp):
GAGCTTACCGATATTCAGCTCAGAGGAGCTTACCATTATTCAGCTCGAAG
Found at i:41540132 original size:54 final size:54
Alignment explanation
Indices: 41540034--41540178 Score: 213
Period size: 54 Copynumber: 2.7 Consensus size: 54
41540024 TGGAGGAAGC
* * *
41540034 GTCCTGGTGGCTATGCCACAATTTATCTAATCTGGTGGCTCTGCCACATATATTT
1 GTCCTGGTGGCTACGCCACAA-TTATCTGATCTGGTGGCTCTGCCACATATATCT
41540089 GTCCTGGTGGCTACGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
1 GTCCTGGTGGCTACGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
*
41540143 GTTCTGGTGGCT-CTGCCACAA-TATCTGTATCTGGTG
1 GTCCTGGTGGCTAC-GCCACAATTATCTG-ATCTGGTG
41540179 ACTTCGTCAC
Statistics
Matches: 84, Mismatches: 4, Indels: 5
0.90 0.04 0.05
Matches are distributed among these distances:
53 7 0.08
54 57 0.68
55 20 0.24
ACGTcount: A:0.18, C:0.25, G:0.23, T:0.34
Consensus pattern (54 bp):
GTCCTGGTGGCTACGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
Found at i:41540174 original size:32 final size:27
Alignment explanation
Indices: 41540037--41540178 Score: 166
Period size: 27 Copynumber: 5.2 Consensus size: 27
41540027 AGGAAGCGTC
* * *
41540037 CTGGTGGCTATGCCACAATTTATCTAAT
1 CTGGTGGCTCTGCCAC-ATATATCTGAT
*
41540065 CTGGTGGCTCTGCCACATATATTTG-T
1 CTGGTGGCTCTGCCACATATATCTGAT
41540091 CCTGGTGGCTAC-GCCACA-ATTATCTGAT
1 -CTGGTGGCT-CTGCCACATA-TATCTGAT
*
41540119 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACATATATCTGAT
41540146 CTGGTGGCTCTGCCACA-ATATCTGTAT
1 CTGGTGGCTCTGCCACATATATCTG-AT
41540173 CTGGTG
1 CTGGTG
41540179 ACTTCGTCAC
Statistics
Matches: 100, Mismatches: 7, Indels: 15
0.82 0.06 0.12
Matches are distributed among these distances:
26 10 0.10
27 72 0.72
28 18 0.18
ACGTcount: A:0.18, C:0.25, G:0.23, T:0.35
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACATATATCTGAT
Found at i:41540175 original size:27 final size:27
Alignment explanation
Indices: 41540037--41540196 Score: 161
Period size: 27 Copynumber: 5.9 Consensus size: 27
41540027 AGGAAGCGTC
* *
41540037 CTGGTGGCTATGCCACAATTTATCT-AAT
1 CTGGTGGCTCTGCCACAA--TATCTGTAT
* *
41540065 CTGGTGGCTCTGCCACATATATTTGT-C
1 CTGGTGGCTCTGCCACA-ATATCTGTAT
41540092 CTGGTGGCTAC-GCCACAATTATCTG-AT
1 CTGGTGGCT-CTGCCACAA-TATCTGTAT
41540119 CTGGTGGCTCTGCCACATATATCTGT-T
1 CTGGTGGCTCTGCCACA-ATATCTGTAT
41540146 CTGGTGGCTCTGCCACAATATCTGTAT
1 CTGGTGGCTCTGCCACAATATCTGTAT
* *
41540173 CTGGTGACT-TCGTCACAATATCTG
1 CTGGTGGCTCT-GCCACAATATCTG
41540197 GCGGCCTCGC
Statistics
Matches: 114, Mismatches: 8, Indels: 21
0.80 0.06 0.15
Matches are distributed among these distances:
26 11 0.10
27 84 0.74
28 18 0.16
29 1 0.01
ACGTcount: A:0.19, C:0.25, G:0.21, T:0.34
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATATCTGTAT
Found at i:41540177 original size:81 final size:81
Alignment explanation
Indices: 41540037--41540196 Score: 207
Period size: 81 Copynumber: 2.0 Consensus size: 81
41540027 AGGAAGCGTC
* * *
41540037 CTGGTGGCTATGCCACAATTTATCTAATCTGGTGGCTCTGCCACATATATTTGTCCTGGTGGCTA
1 CTGGTGGCTATGCCACAATATATCTAATCTGGTGGCTCTGCCACATATATCTGTCCTGGTGACTA
41540102 CGCCACAATTATCTGAT
66 CGCCACAA-TATCTGAT
* ** *
41540119 CTGGTGGCTCTGCCAC-ATATATCTGTTCTGGTGGCTCTGCCACA-ATATCTGTATCTGGTGACT
1 CTGGTGGCTATGCCACAATATATCTAATCTGGTGGCTCTGCCACATATATCTGT-CCTGGTGACT
* *
41540182 TCGTCACAATATCTG
65 ACGCCACAATATCTG
41540197 GCGGCCTCGC
Statistics
Matches: 68, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
80 13 0.19
81 40 0.59
82 15 0.22
ACGTcount: A:0.19, C:0.25, G:0.21, T:0.34
Consensus pattern (81 bp):
CTGGTGGCTATGCCACAATATATCTAATCTGGTGGCTCTGCCACATATATCTGTCCTGGTGACTA
CGCCACAATATCTGAT
Found at i:41542872 original size:15 final size:17
Alignment explanation
Indices: 41542842--41542873 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
41542832 TTGATACTTG
41542842 TGAATGTGAGTTTGGTA
1 TGAATGTGAGTTTGGTA
41542859 TGAAT-TGA-TTTGGTA
1 TGAATGTGAGTTTGGTA
41542874 AATTATGCTA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 7 0.47
16 3 0.20
17 5 0.33
ACGTcount: A:0.25, C:0.00, G:0.31, T:0.44
Consensus pattern (17 bp):
TGAATGTGAGTTTGGTA
Found at i:41543883 original size:56 final size:56
Alignment explanation
Indices: 41543787--41543896 Score: 157
Period size: 56 Copynumber: 2.0 Consensus size: 56
41543777 TGCTTACACG
* * * *
41543787 GCTTAGCACACGGGCATGTGGCTTGGCTGTGTGACCCAAGTCAGTATACTCACATA
1 GCTTAGCACACGGGCATGTGGCTTGGCCGTGTGACACAAGTCAATATACCCACATA
* **
41543843 GCTTAGCACACGGGCGTGTGGCTTGGCCGTGTGTTACAAGTCAATATACCCACA
1 GCTTAGCACACGGGCATGTGGCTTGGCCGTGTGACACAAGTCAATATACCCACA
41543897 CAGGCACAGA
Statistics
Matches: 47, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
56 47 1.00
ACGTcount: A:0.23, C:0.25, G:0.27, T:0.25
Consensus pattern (56 bp):
GCTTAGCACACGGGCATGTGGCTTGGCCGTGTGACACAAGTCAATATACCCACATA
Found at i:41546746 original size:9 final size:9
Alignment explanation
Indices: 41546732--41546766 Score: 52
Period size: 9 Copynumber: 3.7 Consensus size: 9
41546722 TTAGATTTGC
41546732 CAAACATAA
1 CAAACATAA
41546741 CAAACATAA
1 CAAACATAA
41546750 CAAACACATAA
1 C-AA-ACATAA
41546761 CAAACA
1 CAAACA
41546767 CATTCCAAAC
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
9 13 0.54
10 4 0.17
11 7 0.29
ACGTcount: A:0.66, C:0.26, G:0.00, T:0.09
Consensus pattern (9 bp):
CAAACATAA
Found at i:41546776 original size:11 final size:11
Alignment explanation
Indices: 41546735--41546769 Score: 56
Period size: 11 Copynumber: 3.4 Consensus size: 11
41546725 GATTTGCCAA
41546735 ACATAAC-AA-
1 ACATAACAAAC
41546744 ACATAACAAAC
1 ACATAACAAAC
41546755 ACATAACAAAC
1 ACATAACAAAC
41546766 ACAT
1 ACAT
41546770 TCCAAACTCA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
9 7 0.29
10 2 0.08
11 15 0.62
ACGTcount: A:0.63, C:0.26, G:0.00, T:0.11
Consensus pattern (11 bp):
ACATAACAAAC
Found at i:41547927 original size:24 final size:25
Alignment explanation
Indices: 41547876--41547928 Score: 106
Period size: 25 Copynumber: 2.1 Consensus size: 25
41547866 ATATATAGGA
41547876 TTTTTCCTATGCAATTTATCAACTT
1 TTTTTCCTATGCAATTTATCAACTT
41547901 TTTTTCCTATGCAATTTATCAACTT
1 TTTTTCCTATGCAATTTATCAACTT
41547926 TTT
1 TTT
41547929 ACTTAAATTC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.23, C:0.19, G:0.04, T:0.55
Consensus pattern (25 bp):
TTTTTCCTATGCAATTTATCAACTT
Found at i:41551252 original size:32 final size:32
Alignment explanation
Indices: 41551211--41551275 Score: 121
Period size: 32 Copynumber: 2.0 Consensus size: 32
41551201 CACCTCAAAG
41551211 ATAATTATTCTACCAAGATAGACCACATTCGC
1 ATAATTATTCTACCAAGATAGACCACATTCGC
*
41551243 ATAATTATTCTAGCAAGATAGACCACATTCGC
1 ATAATTATTCTACCAAGATAGACCACATTCGC
41551275 A
1 A
41551276 ACCACCTATT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.38, C:0.23, G:0.11, T:0.28
Consensus pattern (32 bp):
ATAATTATTCTACCAAGATAGACCACATTCGC
Found at i:41552025 original size:19 final size:17
Alignment explanation
Indices: 41551989--41552038 Score: 59
Period size: 19 Copynumber: 2.9 Consensus size: 17
41551979 TACATCTCAA
41551989 AAAAT-TATAAAGAAATT
1 AAAATATATAAA-AAATT
41552006 AAATAATATATAAAAAATT
1 -AA-AATATATAAAAAATT
41552025 AAAATATA-AAAAAA
1 AAAATATATAAAAAA
41552039 AACTCAAAAC
Statistics
Matches: 30, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
16 6 0.20
17 6 0.20
18 4 0.13
19 8 0.27
20 6 0.20
ACGTcount: A:0.72, C:0.00, G:0.02, T:0.26
Consensus pattern (17 bp):
AAAATATATAAAAAATT
Found at i:41562254 original size:13 final size:14
Alignment explanation
Indices: 41562236--41562264 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
41562226 TGTGTGCAAG
41562236 TTATGTTTT-CAGA
1 TTATGTTTTCCAGA
41562249 TTATGTTTTCCAGA
1 TTATGTTTTCCAGA
41562263 TT
1 TT
41562265 TTTTAGAGAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 9 0.60
14 6 0.40
ACGTcount: A:0.21, C:0.10, G:0.14, T:0.55
Consensus pattern (14 bp):
TTATGTTTTCCAGA
Found at i:41565495 original size:39 final size:40
Alignment explanation
Indices: 41565450--41565531 Score: 130
Period size: 43 Copynumber: 2.0 Consensus size: 40
41565440 TTAAAATTTT
41565450 AAATTTTTTAAAAAGAC-TAAATAATTTTTCATTTTAAGG
1 AAATTTTTTAAAAAGACATAAATAATTTTTCATTTTAAGG
41565489 AAATTTTTTAAAAAGACTAAATAAATAATTTTTCATTTTAAGG
1 AAATTTTTTAAAAAGAC---ATAAATAATTTTTCATTTTAAGG
41565532 GGCAGCCCAG
Statistics
Matches: 39, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
39 17 0.44
43 22 0.56
ACGTcount: A:0.45, C:0.05, G:0.07, T:0.43
Consensus pattern (40 bp):
AAATTTTTTAAAAAGACATAAATAATTTTTCATTTTAAGG
Found at i:41566386 original size:16 final size:16
Alignment explanation
Indices: 41566365--41566399 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
41566355 AAAAAAATAA
**
41566365 CCCCAAATCGTGAAAT
1 CCCCAAATCACGAAAT
41566381 CCCCAAATCACGAAAT
1 CCCCAAATCACGAAAT
41566397 CCC
1 CCC
41566400 TAAAAACTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.37, C:0.40, G:0.09, T:0.14
Consensus pattern (16 bp):
CCCCAAATCACGAAAT
Found at i:41566499 original size:30 final size:30
Alignment explanation
Indices: 41566458--41566517 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
41566448 TCTACATCCT
41566458 TAATCCCTTATTCCCAAATCATGAAATCTC
1 TAATCCCTTATTCCCAAATCATGAAATCTC
* * *
41566488 TAATCCTTTATTCTCAAATCGTGAAATCTC
1 TAATCCCTTATTCCCAAATCATGAAATCTC
41566518 ATAAACTCTA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.32, C:0.27, G:0.05, T:0.37
Consensus pattern (30 bp):
TAATCCCTTATTCCCAAATCATGAAATCTC
Found at i:41569042 original size:170 final size:172
Alignment explanation
Indices: 41568758--41569099 Score: 501
Period size: 170 Copynumber: 2.0 Consensus size: 172
41568748 ACGTAAATGA
*
41568758 AGCTCGAATGTCGTAATTCTCATTTAGGTACCTGTACCACTCACCATATGGTCATAAGTTCTCTC
1 AGCTCGAATGTCGTAATTCTCATTTAGGTACCTGTACCACTCACCATATGGTCATAAGCTCTCTC
* * * * *
41568823 ATTTCAATATAAACCATAAATCTCTCGTTAAACTATTTGAAATACTACAGAATATTCGATAGCCC
66 ATTTCAAGACAAACCATAAATCTCCCGTTAAACCATTTGAAATACTACAGAATATTCAATAGCCC
* ** *
41568888 CAAATATGGGATAAAATGTCGATGCCATGTCCCAAACATGGT
131 CAAACATGGGATAAAATACCGACGCCATGTCCCAAACATGGT
*
41568930 AGCTCGAATGTTGTAATTCTCATTTAGGTA-CTGTACCACTCA-CATATGGTCATAAGCTCTCTC
1 AGCTCGAATGTCGTAATTCTCATTTAGGTACCTGTACCACTCACCATATGGTCATAAGCTCTCTC
** * *
41568993 ATTTTGAGACAAACCATAAATCTCCCGTTGAACCATTT-AGAATACTACAGGATATTCAATAGCC
66 ATTTCAAGACAAACCATAAATCTCCCGTTAAACCATTTGA-AATACTACAGAATATTCAATAGCC
* *
41569057 CTAAACATGGGATAAAATACCGACGCCATGTCCCAAACCTGGT
130 CCAAACATGGGATAAAATACCGACGCCATGTCCCAAACATGGT
41569100 CTTACACTAG
Statistics
Matches: 152, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
169 1 0.01
170 110 0.72
171 12 0.08
172 29 0.19
ACGTcount: A:0.33, C:0.23, G:0.15, T:0.30
Consensus pattern (172 bp):
AGCTCGAATGTCGTAATTCTCATTTAGGTACCTGTACCACTCACCATATGGTCATAAGCTCTCTC
ATTTCAAGACAAACCATAAATCTCCCGTTAAACCATTTGAAATACTACAGAATATTCAATAGCCC
CAAACATGGGATAAAATACCGACGCCATGTCCCAAACATGGT
Found at i:41571104 original size:40 final size:40
Alignment explanation
Indices: 41571004--41571211 Score: 202
Period size: 40 Copynumber: 5.2 Consensus size: 40
41570994 CAGAATTTAA
* * * * * **
41571004 CCGGATATAATGACTCGCTCAAATGCCTTCGGGACGAAGC
1 CCGGATATAATAACTAGCACAATTGCCTTCGGGTCTTAGC
* * * * *
41571044 CCGGTTATAGTGACTCGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATAACTAGCACAATTGCCTTCGGGTCTTAGC
* * ** * *
41571084 CCGAATTTGGTAACTTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATAACTAGCACAATTGCCTTCGGGTCTTAGC
* *
41571124 CCGGATATAACAACTCGCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATAACTAGCAC-AATTGCCTTCGGGTCTTAGC
* *
41571164 CCGGATATAATTACTAGCACAATTGCCTTCGGGACTTAGC
1 CCGGATATAATAACTAGCACAATTGCCTTCGGGTCTTAGC
41571204 CCGGATAT
1 CCGGATAT
41571212 CATTCCAATG
Statistics
Matches: 140, Mismatches: 26, Indels: 4
0.82 0.15 0.02
Matches are distributed among these distances:
39 2 0.01
40 136 0.97
41 2 0.01
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATAACTAGCACAATTGCCTTCGGGTCTTAGC
Found at i:41571125 original size:80 final size:80
Alignment explanation
Indices: 41571000--41571211 Score: 230
Period size: 80 Copynumber: 2.7 Consensus size: 80
41570990 CCTTCAGAAT
* * * * ** * ***
41571000 TTAA-CCGGATATAATGACTCGCTCAAATGCCTTCGGGACGAAGCCCGGTTATAGTGACTCGCAC
1 TTAACCCGAATATAATAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAACAACTCGCAC
41571064 -AATTGCCTTCGGGTC
66 GAA-TGCCTTCGGGTC
* ** * *
41571079 TTAACCCGAATTTGGTAACTTGCACAAATGCCTTCGGGTCTTAGCCCGGATATAACAACTCGCAC
1 TTAACCCGAATATAATAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAACAACTCGCAC
41571144 GAATGCCTTCGGGTC
66 GAATGCCTTCGGGTC
* * * *
41571159 TTAGCCCGGATATAATTACTAGCACAATTGCCTTCGGGACTTAGCCCGGATAT
1 TTAACCCGAATATAATAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATAT
41571212 CATTCCAATG
Statistics
Matches: 108, Mismatches: 23, Indels: 3
0.81 0.17 0.02
Matches are distributed among these distances:
79 4 0.04
80 102 0.94
81 2 0.02
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.26
Consensus pattern (80 bp):
TTAACCCGAATATAATAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAACAACTCGCAC
GAATGCCTTCGGGTC
Found at i:41575231 original size:6 final size:6
Alignment explanation
Indices: 41575220--41575301 Score: 82
Period size: 6 Copynumber: 14.2 Consensus size: 6
41575210 TCAAATTGAC
* * *
41575220 ATAAAA ATAAAA ATTAAA ATTAAA ATTAAA ATAAAA AT-AAA AT-AAA
1 ATAAAA ATAAAA ATAAAA ATAAAA ATAAAA ATAAAA ATAAAA ATAAAA
* *
41575266 AT-AAA AT-AAA ATAAAA TAAAAAA ATAAGA ATAAAA A
1 ATAAAA ATAAAA ATAAAA -ATAAAA ATAAAA ATAAAA A
41575302 GATAGGAGGA
Statistics
Matches: 68, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
5 20 0.29
6 43 0.63
7 5 0.07
ACGTcount: A:0.78, C:0.00, G:0.01, T:0.21
Consensus pattern (6 bp):
ATAAAA
Found at i:41575261 original size:5 final size:5
Alignment explanation
Indices: 41575223--41575300 Score: 88
Period size: 5 Copynumber: 14.8 Consensus size: 5
41575213 AATTGACATA
41575223 AAAAT AAAAATT AAAATT AAAATT AAAAT AAAAAT AAAAT AAAAT AAAAT
1 AAAAT -AAAA-T AAAA-T AAAA-T AAAAT -AAAAT AAAAT AAAAT AAAAT
41575273 AAAAT AAAAT -AAA- AAAAT AAGAAT AAAA
1 AAAAT AAAAT AAAAT AAAAT AA-AAT AAAA
41575301 AGATAGGAGG
Statistics
Matches: 67, Mismatches: 0, Indels: 11
0.86 0.00 0.14
Matches are distributed among these distances:
4 6 0.09
5 30 0.45
6 30 0.45
7 1 0.01
ACGTcount: A:0.78, C:0.00, G:0.01, T:0.21
Consensus pattern (5 bp):
AAAAT
Found at i:41581967 original size:16 final size:16
Alignment explanation
Indices: 41581943--41581980 Score: 67
Period size: 16 Copynumber: 2.4 Consensus size: 16
41581933 TAGATCAGCG
41581943 AAAGCCAAAATGCCAA
1 AAAGCCAAAATGCCAA
*
41581959 AAAGTCAAAATGCCAA
1 AAAGCCAAAATGCCAA
41581975 AAAGCC
1 AAAGCC
41581981 GAAAGTTTGA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.55, C:0.24, G:0.13, T:0.08
Consensus pattern (16 bp):
AAAGCCAAAATGCCAA
Found at i:41582230 original size:29 final size:29
Alignment explanation
Indices: 41582196--41582273 Score: 113
Period size: 29 Copynumber: 2.7 Consensus size: 29
41582186 TGAGCATGAC
*
41582196 TATAAATGTGAATTGGGCCTGATGAGCCA
1 TATAAATGTGAATTGGGCCTAATGAGCCA
* * *
41582225 TATAAATGTGATTTGGGCATAATGGGCCA
1 TATAAATGTGAATTGGGCCTAATGAGCCA
41582254 TATAAATGTG-ATTGGGCCTA
1 TATAAATGTGAATTGGGCCTA
41582274 GTGGGTCATA
Statistics
Matches: 43, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
28 8 0.19
29 35 0.81
ACGTcount: A:0.31, C:0.12, G:0.27, T:0.31
Consensus pattern (29 bp):
TATAAATGTGAATTGGGCCTAATGAGCCA
Found at i:41582278 original size:28 final size:28
Alignment explanation
Indices: 41582196--41582285 Score: 110
Period size: 29 Copynumber: 3.1 Consensus size: 28
41582186 TGAGCATGAC
*
41582196 TATAAATGTGAATTGGGCCT-GATGAGCCA
1 TATAAATGTG-ATTGGGCCTAG-TGGGCCA
* *
41582225 TATAAATGTGATTTGGGCATAATGGGCCA
1 TATAAATGTGA-TTGGGCCTAGTGGGCCA
*
41582254 TATAAATGTGATTGGGCCTAGTGGGTCA
1 TATAAATGTGATTGGGCCTAGTGGGCCA
41582282 TATA
1 TATA
41582286 TAGGTATGTG
Statistics
Matches: 53, Mismatches: 6, Indels: 5
0.83 0.09 0.08
Matches are distributed among these distances:
28 19 0.36
29 34 0.64
ACGTcount: A:0.30, C:0.11, G:0.28, T:0.31
Consensus pattern (28 bp):
TATAAATGTGATTGGGCCTAGTGGGCCA
Found at i:41583665 original size:46 final size:44
Alignment explanation
Indices: 41583601--41583731 Score: 138
Period size: 46 Copynumber: 2.9 Consensus size: 44
41583591 AGCTTGTATA
* * * *
41583601 TCTCAAGGCTGATGCATGTCCCAGACATGTCTTACACTAACTCTC
1 TCTCAATGCCGATACATGTCCCAGACATGTCTTACACT-ACGCTC
*
41583646 GTCTCAATGCCGATACATGTCCCAGACATGTCTTACACT-GGCTC
1 -TCTCAATGCCGATACATGTCCCAGACATGTCTTACACTACGCTC
* * *
41583690 TCACAATGTGGCCGATACATGTCCCAAACATGTCTTCCACTA
1 TCTCAA--T-GCCGATACATGTCCCAGACATGTCTTACACTA
41583732 GCACACATAT
Statistics
Matches: 73, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
43 5 0.07
44 3 0.04
45 1 0.01
46 64 0.88
ACGTcount: A:0.25, C:0.31, G:0.16, T:0.27
Consensus pattern (44 bp):
TCTCAATGCCGATACATGTCCCAGACATGTCTTACACTACGCTC
Found at i:41598551 original size:3 final size:3
Alignment explanation
Indices: 41598543--41598578 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
41598533 AGACTGCTAT
41598543 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
41598579 GTCAATTTCT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:41600853 original size:19 final size:20
Alignment explanation
Indices: 41600808--41600846 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
41600798 AGGGGTGGTA
*
41600808 AATTTTTTTAATATTAATAT
1 AATTATTTTAATATTAATAT
41600828 AATTATTTTAA-ATTAATAT
1 AATTATTTTAATATTAATAT
41600847 TAATATTAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 8 0.44
20 10 0.56
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (20 bp):
AATTATTTTAATATTAATAT
Found at i:41600864 original size:25 final size:25
Alignment explanation
Indices: 41600815--41600864 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
41600805 GTAAATTTTT
* *
41600815 TTAATATTAATATAATTATTTTAAA
1 TTAATATTAATATAATAATTATAAA
41600840 TTAATATTAATATTAA-AATTATAAA
1 TTAATATTAATA-TAATAATTATAAA
41600865 AACAGAAAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 19 0.86
26 3 0.14
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (25 bp):
TTAATATTAATATAATAATTATAAA
Found at i:41603218 original size:23 final size:23
Alignment explanation
Indices: 41603155--41603225 Score: 81
Period size: 23 Copynumber: 3.1 Consensus size: 23
41603145 AATCACTAAT
**
41603155 TTGCACC-AAAGTGCCACGGTCAA
1 TTGCACCGAAA-TGCCACTTTCAA
* * *
41603178 TTGCACTGGAGTGCCACTTTCAA
1 TTGCACCGAAATGCCACTTTCAA
41603201 TTGCACCGAAATGCCACTTTCAA
1 TTGCACCGAAATGCCACTTTCAA
41603224 TT
1 TT
41603226 TACGCGTTGA
Statistics
Matches: 39, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
23 38 0.97
24 1 0.03
ACGTcount: A:0.27, C:0.28, G:0.18, T:0.27
Consensus pattern (23 bp):
TTGCACCGAAATGCCACTTTCAA
Found at i:41608382 original size:11 final size:10
Alignment explanation
Indices: 41608345--41608374 Score: 51
Period size: 10 Copynumber: 2.9 Consensus size: 10
41608335 TATTAAGATA
41608345 ATAAAAACTAT
1 ATAAAAAC-AT
41608356 ATAAAAACAT
1 ATAAAAACAT
41608366 ATAAAAACA
1 ATAAAAACA
41608375 CTCTAAAACA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 11 0.58
11 8 0.42
ACGTcount: A:0.70, C:0.10, G:0.00, T:0.20
Consensus pattern (10 bp):
ATAAAAACAT
Found at i:41608541 original size:24 final size:24
Alignment explanation
Indices: 41608512--41608559 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
41608502 AATCCCTACT
41608512 AGCATATATGTTCATTAATCACCA
1 AGCATATATGTTCATTAATCACCA
41608536 AGCATATATGTTCATTAATCACCA
1 AGCATATATGTTCATTAATCACCA
41608560 TACTCTCACT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.38, C:0.21, G:0.08, T:0.33
Consensus pattern (24 bp):
AGCATATATGTTCATTAATCACCA
Found at i:41609479 original size:12 final size:12
Alignment explanation
Indices: 41609462--41609502 Score: 55
Period size: 12 Copynumber: 3.3 Consensus size: 12
41609452 ATTTACTTTA
41609462 ATTAATTAAAAT
1 ATTAATTAAAAT
*
41609474 ATTAATAAAATAT
1 ATTAATTAAA-AT
*
41609487 ATTTATTAAAAT
1 ATTAATTAAAAT
41609499 ATTA
1 ATTA
41609503 CTAAAATAAT
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
12 14 0.58
13 10 0.42
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (12 bp):
ATTAATTAAAAT
Found at i:41609495 original size:25 final size:26
Alignment explanation
Indices: 41609466--41609515 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 26
41609456 ACTTTAATTA
41609466 ATTAAAATATTAATAAAAT-ATATTT
1 ATTAAAATATTAATAAAATAATATTT
*
41609491 ATTAAAATATTACTAAAATAATATT
1 ATTAAAATATTAATAAAATAATATT
41609516 AAATAGTTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 18 0.78
26 5 0.22
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (26 bp):
ATTAAAATATTAATAAAATAATATTT
Found at i:41611077 original size:47 final size:48
Alignment explanation
Indices: 41611016--41611230 Score: 195
Period size: 46 Copynumber: 4.6 Consensus size: 48
41611006 TATAAGAGCC
41611016 AGTGTAAGACCATGTCTGGGACATGGCATCGA-CATCGAGACGAGTACT
1 AGTGTAAGACCATGTCTGGGACATGGCATC-ACCATCGAGACGAGTACT
* *
41611064 AGTGTAAGA-CATGTTTGGGACAT-GCATCGGCC-TCGAGAC--GTAAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATC-ACCATCGAGACGAGT-A-CT
* * *
41611110 AGTGTAAGA-CATGTCTGGGACAT-GCATCAGC-TACGAGATGA-TAGT
1 AGTGTAAGACCATGTCTGGGACATGGCATCACCAT-CGAGACGAGTACT
*
41611155 CAGTGTAAGACCATGTTTGGGACATGGCATCACCAT-GAGATCTGAG--CT
1 -AGTGTAAGACCATGTCTGGGACATGGCATCACCATCGAGA-C-GAGTACT
* *
41611203 AGTTTAAGACCGTGTCTGGGACATGGCA
1 AGTGTAAGACCATGTCTGGGACATGGCA
41611231 CCGGCACTTT
Statistics
Matches: 140, Mismatches: 14, Indels: 27
0.77 0.08 0.15
Matches are distributed among these distances:
44 2 0.01
45 4 0.03
46 57 0.41
47 57 0.41
48 17 0.12
49 3 0.02
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCACCATCGAGACGAGTACT
Found at i:41611172 original size:93 final size:93
Alignment explanation
Indices: 41610968--41611227 Score: 252
Period size: 94 Copynumber: 2.8 Consensus size: 93
41610958 TTATTGTGGG
* * * * *
41610968 CTAGTGTAAGACATGTTAGGGACAT-GCATCAACCA-CATTAT-AAGAGCCAGTGTAAGACCATG
1 CTAGTGTAAGACATGTTTGGGACATGGCATC-ACCATGA-GATCTA-AGCTAGTGTAAGACCATG
41611030 TCTGGGACATGGCATCGACATCGAGACGAGTA
63 TCTGGGACAT-GCATCGACATCGAGACGAGTA
*
41611062 CTAGTGTAAGACATGTTTGGGACAT-GCATCGGCC-TCGAGA-CGTAAGCTAGTGTAAGA-CATG
1 CTAGTGTAAGACATGTTTGGGACATGGCATC-ACCAT-GAGATC-TAAGCTAGTGTAAGACCATG
*
41611123 TCTGGGACATGCATC-AGC-TACGAGATGA-TA
63 TCTGGGACATGCATCGA-CAT-CGAGACGAGTA
* * * *
41611153 GTCAGTGTAAGACCATGTTTGGGACATGGCATCACCATGAGATCTGAGCTAGTTTAAGACCGTGT
1 CT-AGTGTAAGA-CATGTTTGGGACATGGCATCACCATGAGATCTAAGCTAGTGTAAGACCATGT
41611218 CTGGGACATG
64 CTGGGACATG
41611228 GCACCGGCAC
Statistics
Matches: 141, Mismatches: 13, Indels: 24
0.79 0.07 0.13
Matches are distributed among these distances:
91 5 0.04
92 22 0.16
93 47 0.33
94 65 0.46
95 2 0.01
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.24
Consensus pattern (93 bp):
CTAGTGTAAGACATGTTTGGGACATGGCATCACCATGAGATCTAAGCTAGTGTAAGACCATGTCT
GGGACATGCATCGACATCGAGACGAGTA
Found at i:41611223 original size:140 final size:139
Alignment explanation
Indices: 41610967--41611227 Score: 334
Period size: 140 Copynumber: 1.9 Consensus size: 139
41610957 GTTATTGTGG
*
41610967 GCTAGTGTAAGACATGTTAGGGACATGCATCAACCACATTATAAGAGCCAGTGTAAGACCATGTC
1 GCTAGTGTAAGACATGTTAGGGACATGCATCAACCACATGATAAGAGCCAGTGTAAGACCATGTC
*
41611032 TGGGACATGGCATCGACATCGAGACGAGTACTAGTGTAAGACATGTTTGGGACATGCATCGGCCT
66 TGGGACATGGCATCGACATCGAGACGAG-ACTAGTGTAAGACATGTCTGGGACATGCATCGGCCT
41611097 CGAGACGTAA
130 CGAGACGTAA
* * * * *
41611107 GCTAGTGTAAGACATGTCT-GGGACATGCATCAGCTACGA-GATGATAGTCAGTGTAAGACCATG
1 GCTAGTGTAAGACATGT-TAGGGACATGCATCAACCAC-ATGATAAGAGCCAGTGTAAGACCATG
* * *
41611170 TTTGGGACATGGCATC-ACCAT-GAGATCTGAG-CTAGTTTAAGACCGTGTCTGGGACATG
64 TCTGGGACATGGCATCGA-CATCGAGA-C-GAGACTAGTGTAAGA-CATGTCTGGGACATG
41611228 GCACCGGCAC
Statistics
Matches: 105, Mismatches: 10, Indels: 12
0.83 0.08 0.09
Matches are distributed among these distances:
139 15 0.14
140 85 0.81
141 5 0.05
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.24
Consensus pattern (139 bp):
GCTAGTGTAAGACATGTTAGGGACATGCATCAACCACATGATAAGAGCCAGTGTAAGACCATGTC
TGGGACATGGCATCGACATCGAGACGAGACTAGTGTAAGACATGTCTGGGACATGCATCGGCCTC
GAGACGTAA
Found at i:41612340 original size:20 final size:21
Alignment explanation
Indices: 41612302--41612340 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
41612292 GCTGAAAAGG
*
41612302 TACACGGGCGTGTTGCCCTTC
1 TACACGGGCATGTTGCCCTTC
41612323 TACACGGGCATG-TGCCCT
1 TACACGGGCATGTTGCCCT
41612341 GTTTCAAAGT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.13, C:0.33, G:0.28, T:0.26
Consensus pattern (21 bp):
TACACGGGCATGTTGCCCTTC
Found at i:41618711 original size:46 final size:44
Alignment explanation
Indices: 41618652--41618815 Score: 175
Period size: 46 Copynumber: 3.5 Consensus size: 44
41618642 AACGAGTGCT
41618652 AGTGTAAGACATGTCTGGGACATGCATTGGCCTTGAGACTTAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATTGG-CTTGAGA-TTAAGCC
* * * *
41618698 AGTGTAAGACATGTCTGGGACATGCATCGGCTACGAGATGATAGTC
1 AGTGTAAGACATGTCTGGGACATGCATTGGCT-TGAGATTA-AGCC
* * * * *
41618744 AGTGTAAGACCATGTCTAGGACATGGCATTGACATGAGATATGAGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATTGGCTTGAGAT-TAAGCC
41618791 AGTGTAAGACAGTGTCTGGGACATG
1 AGTGTAAGACA-TGTCTGGGACATG
41618816 GCATCAACAT
Statistics
Matches: 98, Mismatches: 14, Indels: 12
0.79 0.11 0.10
Matches are distributed among these distances:
45 4 0.04
46 48 0.49
47 40 0.41
48 6 0.06
ACGTcount: A:0.29, C:0.16, G:0.30, T:0.25
Consensus pattern (44 bp):
AGTGTAAGACATGTCTGGGACATGCATTGGCTTGAGATTAAGCC
Found at i:41619896 original size:21 final size:21
Alignment explanation
Indices: 41619870--41619912 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
41619860 CACGGGCCAT
41619870 CAAGCGTGTTGCCCTTCTACA
1 CAAGCGTGTTGCCCTTCTACA
*
41619891 CAAGCGTGTTGCCCTTTTACA
1 CAAGCGTGTTGCCCTTCTACA
41619912 C
1 C
41619913 GGTGAGTGCC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.19, C:0.33, G:0.19, T:0.30
Consensus pattern (21 bp):
CAAGCGTGTTGCCCTTCTACA
Found at i:41625797 original size:28 final size:28
Alignment explanation
Indices: 41625764--41625830 Score: 82
Period size: 28 Copynumber: 2.4 Consensus size: 28
41625754 GGGCCTGGGG
* *
41625764 GCCATATGAATGTGATT-GGGCTTGATGA
1 GCCATATGAATGAGATTAGGTC-TGATGA
* *
41625792 GCCATATGAACGAGATTAGGTCTGATGG
1 GCCATATGAATGAGATTAGGTCTGATGA
41625820 GCCATATGAAT
1 GCCATATGAAT
41625831 AAGTATGGAT
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
28 30 0.91
29 3 0.09
ACGTcount: A:0.28, C:0.13, G:0.30, T:0.28
Consensus pattern (28 bp):
GCCATATGAATGAGATTAGGTCTGATGA
Found at i:41626160 original size:27 final size:27
Alignment explanation
Indices: 41626130--41626415 Score: 296
Period size: 27 Copynumber: 10.6 Consensus size: 27
41626120 ATAATAAGAG
*
41626130 AAATTATTGAAATACCCTCGATTTGTA
1 AAATTATCGAAATACCCTCGATTTGTA
* *
41626157 AAATTATCGAAATACCCCCGATTTGTG
1 AAATTATCGAAATACCCTCGATTTGTA
*
41626184 AAATTATCGAAATACCCTCGA-TTGTG
1 AAATTATCGAAATACCCTCGATTTGTA
* *
41626210 AAATTA-CTGAAAGACCCTCAATTTGTA
1 AAATTATC-GAAATACCCTCGATTTGTA
* * *
41626237 AAATTATCAAAAATACCCTTGA-TTGTG
1 AAATTATC-GAAATACCCTCGATTTGTA
41626264 AAATTATCGAAATACCCTCGATTTGTA
1 AAATTATCGAAATACCCTCGATTTGTA
* * *
41626291 AAATTACCGAAATACCC-CTAATTTGTG
1 AAATTATCGAAATACCCTC-GATTTGTA
*
41626318 AAATTATCGAAACACCCTCGATTTGTA
1 AAATTATCGAAATACCCTCGATTTGTA
* * *
41626345 AAATTATTGAAATACCCTTG-TAGTGTA
1 AAATTATCGAAATACCCTCGAT-TTGTA
* * *
41626372 AAATTACCGAAATACCCTTG-TAGTGTA
1 AAATTATCGAAATACCCTCGAT-TTGTA
* *
41626399 AAATGATCGACATACCC
1 AAATTATCGAAATACCC
41626416 CTATAGGGTA
Statistics
Matches: 220, Mismatches: 32, Indels: 14
0.83 0.12 0.05
Matches are distributed among these distances:
25 1 0.00
26 35 0.16
27 173 0.79
28 11 0.05
ACGTcount: A:0.37, C:0.19, G:0.13, T:0.31
Consensus pattern (27 bp):
AAATTATCGAAATACCCTCGATTTGTA
Found at i:41626408 original size:81 final size:79
Alignment explanation
Indices: 41626138--41626389 Score: 326
Period size: 81 Copynumber: 3.1 Consensus size: 79
41626128 AGAAATTATT
* *
41626138 GAAATACCCTCGATTTGTAAAATTATCGAAATACCCCCGATTTGTGAAATTATCGAAATACCCTC
1 GAAATACCCT-AATTTGTAAAATTATCGAAATACCCTCGATTTGTGAAATTATCGAAATACCCTC
* *
41626203 GATTGTGAAATTACT
65 GATTGTAAAATTACC
* * *
41626218 GAAAGACCCTCAATTTGTAAAATTATCAAAAATACCCTTGA-TTGTGAAATTATCGAAATACCCT
1 GAAATACCCT-AATTTGTAAAATTATC-GAAATACCCTCGATTTGTGAAATTATCGAAATACCCT
41626282 CGATTTGTAAAATTACC
64 CGA-TTGTAAAATTACC
* * * * *
41626299 GAAATACCCCTAATTTGTGAAATTATCGAAACACCCTCGATTTGTAAAATTATTGAAATACCCTT
1 GAAATA-CCCTAATTTGTAAAATTATCGAAATACCCTCGATTTGTGAAATTATCGAAATACCCTC
*
41626364 GTAGTGTAAAATTACC
65 G-ATTGTAAAATTACC
41626380 GAAATACCCT
1 GAAATACCCT
41626390 TGTAGTGTAA
Statistics
Matches: 151, Mismatches: 16, Indels: 10
0.85 0.09 0.06
Matches are distributed among these distances:
80 65 0.43
81 81 0.54
82 5 0.03
ACGTcount: A:0.37, C:0.19, G:0.12, T:0.31
Consensus pattern (79 bp):
GAAATACCCTAATTTGTAAAATTATCGAAATACCCTCGATTTGTGAAATTATCGAAATACCCTCG
ATTGTAAAATTACC
Found at i:41626426 original size:27 final size:27
Alignment explanation
Indices: 41626341--41626431 Score: 110
Period size: 27 Copynumber: 3.4 Consensus size: 27
41626331 ACCCTCGATT
* *
41626341 TGTAAAATTATTGAAATACCCTTGTAG
1 TGTAAAATGATCGAAATACCCTTGTAG
* *
41626368 TGTAAAATTACCGAAATACCCTTGTAG
1 TGTAAAATGATCGAAATACCCTTGTAG
* * *
41626395 TGTAAAATGATCGACATACCCCTATAG
1 TGTAAAATGATCGAAATACCCTTGTAG
*
41626422 GGTAAAATGA
1 TGTAAAATGA
41626432 CTGTTTTCCC
Statistics
Matches: 56, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 56 1.00
ACGTcount: A:0.38, C:0.15, G:0.16, T:0.30
Consensus pattern (27 bp):
TGTAAAATGATCGAAATACCCTTGTAG
Found at i:41628185 original size:49 final size:48
Alignment explanation
Indices: 41628020--41628186 Score: 141
Period size: 50 Copynumber: 3.5 Consensus size: 48
41628010 GACATAAGCT
* * * *
41628020 AGTGTAAGA-CATGTCTGAGACAT-GCATCGGCTATG-AGATGT--GTC
1 AGTGTAAGACCATGTCTGGGACATAGCTTCGGC-ACGAATATGTGAGTC
* *
41628064 AGTGTAAGACCATGTCTGGGACATGGCTTCGGCACGAATATGTGAGAGC
1 AGTGTAAGACCATGTCTGGGACATAGCTTCGGCACGAATATGTGAG-TC
* * *
41628113 TAGTGTAAAACCATGTCTGGGACATAG-TGTCGGCCTCG-ATGATGTTAGTC
1 -AGTGTAAGACCATGTCTGGGACATAGCT-TCGG-CACGAAT-ATGTGAGTC
*
41628163 AGTGTAAGACCATGTTTGGGACAT
1 AGTGTAAGACCATGTCTGGGACAT
41628187 GGCATTGACT
Statistics
Matches: 101, Mismatches: 12, Indels: 15
0.79 0.09 0.12
Matches are distributed among these distances:
44 9 0.09
45 15 0.15
46 12 0.12
48 1 0.01
49 24 0.24
50 31 0.31
51 9 0.09
ACGTcount: A:0.26, C:0.17, G:0.30, T:0.27
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGGGACATAGCTTCGGCACGAATATGTGAGTC
Found at i:41628233 original size:146 final size:140
Alignment explanation
Indices: 41627919--41628243 Score: 327
Period size: 138 Copynumber: 2.3 Consensus size: 140
41627909 GTGGGTTATT
* ** * * * *
41627919 ATGAGCCAGTGTAAGACCATGTCTAAGACATGACATCAGCATTG-AGA--TGAGAGCTAGTGTAA
1 ATGAGCCAGTATAAGACCATGTCTGGGACATGGCATCGGCA-CGAATATGTGAGAGCTAGTGTAA
*
41627981 GACATGTCTGGGAAATGTATCGGCCTCGAGACATAAGCTAGTGTAAGACATGTCTGAGACATGCA
65 AACATGTCTGGGAAATGTATCGGCCTCGAGACATAAGCTAGTGTAAGACATGTCTGAGACATGCA
*
41628046 TCGGCTATGAG
130 TCGACTATGAG
* * * *
41628057 ATGTGTCAGTGTAAGACCATGTCTGGGACATGGCTTCGGCACGAATATGTGAGAGCTAGTGTAAA
1 ATGAGCCAGTATAAGACCATGTCTGGGACATGGCATCGGCACGAATATGTGAGAGCTAGTGTAAA
* * ** * * *
41628122 ACCATGTCTGGGACATAGTGTCGGCCTCGATGATGTTAG-TCAGTGTAAGACCATGTTTGGGACA
66 A-CATGTCTGGGAAAT-GTATCGGCCTCGA-GACATAAGCT-AGTGTAAGA-CATGTCTGAGACA
*
41628186 TGGCATTGACT-TGAG
126 T-GCATCGACTATGAG
* *
41628201 ATATGAGCCAGTATAAGACCATGTTTTGGACATGGCATCGGCA
1 --ATGAGCCAGTATAAGACCATGTCTGGGACATGGCATCGGCA
41628244 TTCTACCCCA
Statistics
Matches: 151, Mismatches: 25, Indels: 14
0.79 0.13 0.07
Matches are distributed among these distances:
137 1 0.01
138 36 0.24
140 16 0.11
141 13 0.09
142 13 0.09
143 14 0.09
144 16 0.11
145 7 0.05
146 35 0.23
ACGTcount: A:0.29, C:0.17, G:0.29, T:0.26
Consensus pattern (140 bp):
ATGAGCCAGTATAAGACCATGTCTGGGACATGGCATCGGCACGAATATGTGAGAGCTAGTGTAAA
ACATGTCTGGGAAATGTATCGGCCTCGAGACATAAGCTAGTGTAAGACATGTCTGAGACATGCAT
CGACTATGAG
Found at i:41630894 original size:545 final size:543
Alignment explanation
Indices: 41629485--41631045 Score: 2822
Period size: 543 Copynumber: 2.9 Consensus size: 543
41629475 TTAGATAAAC
41629485 AACATTTGTTAAGTGATTTTTAGTAAAATGTCCAATTAGGGATTAAATTGTGAAATGTGTAAATT
1 AACATTTGTTAAGTGATTTTTAGTAAAATGTCCAATTAGGGATTAAATTGTGAAATGTGTAAATT
41629550 TTGTGGGTAAATTGTGAAATAAAT-AAAAATATGGACTGATAGGGACCTAATTGAAATTCGGCTA
66 TTGTGGGTAAATTGTGAAATAAATAAAAAATATGGACTGATAGGGACCTAATTGAAATTCGGCTA
*
41629614 GCATGGGTTTTGGTTGAATTGCATGGATTTGTAATTTTATGAAATAATGACTAAATTGTAAAAAT
131 GCATGGGTTTTGGTTGAATTGCATGAATTTGTAATTTTATGAAATAATGACTAAATTGTAAAAAT
41629679 GTTGAAATGTTAGGGGCAAAAATATAAAATTACCTTAATGTGTGGTTTGGATTAAATTGAATAGA
196 GTTGAAATGTTAGGGGCAAAAATATAAAATTACCTTAATGTGTGGTTTGGATTAAATTGAATAGA
41629744 GAGATTATTAAATAAGTTAATTTTGATTACGGTTAGATCAAGAAAAGTGAAATTCAGATTTAGAT
261 GAGATTATTAAATAAGTTAATTTTGATTACGGTTAGATCAAGAAAAGTGAAATTCAGATTTAGAT
41629809 CAGGGAAAGAACAAAATATCGGACTAATTGACTTATTTTTTTGTTTTTGCATTCGAGG-AAAGTT
326 CAGGGAAAGAACAAAATATCGGACTAATTGACTTATTTTTTTGTTTTTGCATTCGAGGTAAA-TT
* *
41629873 CGTATGTAATAAGCTTTGTTATAATTGTATTTTAAATGTTATAATATTGCATAAATTATGAATAA
390 CGTATGTAATAAGCTTTGTTATAATTGTATTTTAAATGCTATAATATTGCATAAATTGTGAATAA
*
41629938 AACTCTAGGGACATGTTCTATGACAATTCGACAAGTGTGAAATCTCAGTTGAACCTTAGGAATAG
455 GACTCT-GGGACATGTTCTATGACAATTCGACAAGTGTGAAATCTCAGTTGAACCTTAGGAATAG
41630003 ATTAGGATACGAATGACATGTCATT
519 ATTAGGATACGAATGACATGTCATT
41630028 AACATTT-TTAAGTGATTTTTAGTAAAATGTCCAATTAGGGATTAAATTGTGAAATGTGTAAATT
1 AACATTTGTTAAGTGATTTTTAGTAAAATGTCCAATTAGGGATTAAATTGTGAAATGTGTAAATT
*
41630092 TTGTGGGTAAATTGTAAAATAAATAAAAAATATGGACTGATAGGGACCTAATTGAAATTCGGCTA
66 TTGTGGGTAAATTGTGAAATAAATAAAAAATATGGACTGATAGGGACCTAATTGAAATTCGGCTA
41630157 GCATGGGTTTTGGTTGAATTGCATGAATTTGTAATTTTATGAAATAATGACTAAATTGTAAAAAT
131 GCATGGGTTTTGGTTGAATTGCATGAATTTGTAATTTTATGAAATAATGACTAAATTGTAAAAAT
*
41630222 GTTGAAATATTAGGGGCAAAAATATAAAATTACCTTAATGTGTGGTTTGGATTAAATTGAATAGA
196 GTTGAAATGTTAGGGGCAAAAATATAAAATTACCTTAATGTGTGGTTTGGATTAAATTGAATAGA
41630287 GAGATTATTAAATAAGTTAATTTTGATTACGGTTAGATCAAGAAAAGTGAAATTCAGATTTAGAT
261 GAGATTATTAAATAAGTTAATTTTGATTACGGTTAGATCAAGAAAAGTGAAATTCAGATTTAGAT
* * * * * *
41630352 AAAGGAAATAACAAAATATCAGACTAATCGACTTATTTTGTTGTTTTTGCATTCGAGGTAAATTC
326 CAGGGAAAGAACAAAATATCGGACTAATTGACTTATTTTTTTGTTTTTGCATTCGAGGTAAATTC
* *
41630417 GTATGTAATAAGCTTTGTTATAATTGTATTTTAAATGCAATAATATTGCATAAATTGTGAATATG
391 GTATGTAATAAGCTTTGTTATAATTGTATTTTAAATGCTATAATATTGCATAAATTGTGAATAAG
* * *
41630482 ACTCTGTGGGCATGTTCTATGACAATTCGGCAAGTGTGAAATCTCGGTTGAACCTTAGGAATAGA
456 ACTCTG-GGACATGTTCTATGACAATTCGACAAGTGTGAAATCTCAGTTGAACCTTAGGAATAGA
*
41630547 TTAGGATATGAATGACATGTCATT
520 TTAGGATACGAATGACATGTCATT
41630571 AACATTTGTTAAGTGATTTTTAGTAAAATGTCCAATTAGGGATTAAATTGTGAAATGTGTAAATT
1 AACATTTGTTAAGTGATTTTTAGTAAAATGTCCAATTAGGGATTAAATTGTGAAATGTGTAAATT
* *
41630636 TTGTGGGTAAGTTGTGAAATAAATAAAAAAATATGGACTGATAGGGACCTAATTGAAATTTGGCT
66 TTGTGGGTAAATTGTGAAATAAAT-AAAAAATATGGACTGATAGGGACCTAATTGAAATTCGGCT
41630701 AGCATGGGTTTTGGTTGAATTGCATGAATTTGTAATTTTATGAAATAATGACTAAATTGTAAAAA
130 AGCATGGGTTTTGGTTGAATTGCATGAATTTGTAATTTTATGAAATAATGACTAAATTGTAAAAA
*
41630766 TGTTGAAATGTTAGGGGCAAAAATATAAAATTGCCTTAATGTGTGGTTTGGATTAAATTGAATAG
195 TGTTGAAATGTTAGGGGCAAAAATATAAAATTACCTTAATGTGTGGTTTGGATTAAATTGAATAG
* *
41630831 AGAGATTATTAAATAAGTTAATTTTGTTTACGATTAGATCAAGAAAAGTGAAATTCAGATTTAGA
260 AGAGATTATTAAATAAGTTAATTTTGATTACGGTTAGATCAAGAAAAGTGAAATTCAGATTTAGA
*
41630896 TCAGGGAAAGAACAAAATATCGGACTAATTGACTTATTTTTTTGTTTTTGCATTCGAGGTAAGTT
325 TCAGGGAAAGAACAAAATATCGGACTAATTGACTTATTTTTTTGTTTTTGCATTCGAGGTAAATT
*
41630961 CGTATGTAATAAGCTTTGTTATAATTGTATTTTAAATGCTATAATATTGCATAAATTGTGAATAC
390 CGTATGTAATAAGCTTTGTTATAATTGTATTTTAAATGCTATAATATTGCATAAATTGTGAATAA
*
41631026 GACTCTACGGACATGTTCTA
455 GACTCT-GGGACATGTTCTA
41631046 CCGGTGGCTG
Statistics
Matches: 976, Mismatches: 36, Indels: 10
0.95 0.04 0.01
Matches are distributed among these distances:
542 81 0.08
543 445 0.46
544 82 0.08
545 368 0.38
ACGTcount: A:0.37, C:0.07, G:0.20, T:0.36
Consensus pattern (543 bp):
AACATTTGTTAAGTGATTTTTAGTAAAATGTCCAATTAGGGATTAAATTGTGAAATGTGTAAATT
TTGTGGGTAAATTGTGAAATAAATAAAAAATATGGACTGATAGGGACCTAATTGAAATTCGGCTA
GCATGGGTTTTGGTTGAATTGCATGAATTTGTAATTTTATGAAATAATGACTAAATTGTAAAAAT
GTTGAAATGTTAGGGGCAAAAATATAAAATTACCTTAATGTGTGGTTTGGATTAAATTGAATAGA
GAGATTATTAAATAAGTTAATTTTGATTACGGTTAGATCAAGAAAAGTGAAATTCAGATTTAGAT
CAGGGAAAGAACAAAATATCGGACTAATTGACTTATTTTTTTGTTTTTGCATTCGAGGTAAATTC
GTATGTAATAAGCTTTGTTATAATTGTATTTTAAATGCTATAATATTGCATAAATTGTGAATAAG
ACTCTGGGACATGTTCTATGACAATTCGACAAGTGTGAAATCTCAGTTGAACCTTAGGAATAGAT
TAGGATACGAATGACATGTCATT
Found at i:41633073 original size:41 final size:41
Alignment explanation
Indices: 41633016--41633098 Score: 166
Period size: 41 Copynumber: 2.0 Consensus size: 41
41633006 GTCCCATAGA
41633016 TTGCTCTCGTATGCATCATATATAAACTTGGAGTACATACC
1 TTGCTCTCGTATGCATCATATATAAACTTGGAGTACATACC
41633057 TTGCTCTCGTATGCATCATATATAAACTTGGAGTACATACC
1 TTGCTCTCGTATGCATCATATATAAACTTGGAGTACATACC
41633098 T
1 T
41633099 GTTTAACCTT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 42 1.00
ACGTcount: A:0.29, C:0.22, G:0.14, T:0.35
Consensus pattern (41 bp):
TTGCTCTCGTATGCATCATATATAAACTTGGAGTACATACC
Found at i:41633201 original size:37 final size:36
Alignment explanation
Indices: 41633151--41633237 Score: 147
Period size: 37 Copynumber: 2.3 Consensus size: 36
41633141 TACGAAGTCT
41633151 TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
1 TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
41633187 GTACCCGGACATAATCTCCACACGTAGTCATCGGGTC
1 -TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
41633224 TCACCCGGAACATA
1 T-ACCCGG-ACATA
41633238 TTTCCAAGTT
Statistics
Matches: 48, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
36 1 0.02
37 42 0.88
38 5 0.10
ACGTcount: A:0.26, C:0.33, G:0.20, T:0.21
Consensus pattern (36 bp):
TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
Found at i:41633373 original size:49 final size:49
Alignment explanation
Indices: 41633306--41633507 Score: 377
Period size: 49 Copynumber: 4.1 Consensus size: 49
41633296 TTTACCACAT
* *
41633306 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTCATCAC
1 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTCATCAC
41633355 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTCATCAC
1 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTCATCAC
41633404 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTCATCAC
1 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTCATCAC
*
41633453 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTCATCTC
1 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTCATCAC
41633502 ATATAT
1 ATATAT
41633508 TATTATGTAC
Statistics
Matches: 150, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 150 1.00
ACGTcount: A:0.30, C:0.28, G:0.08, T:0.33
Consensus pattern (49 bp):
ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTCATCAC
Found at i:41637886 original size:42 final size:42
Alignment explanation
Indices: 41637765--41637886 Score: 140
Period size: 43 Copynumber: 2.9 Consensus size: 42
41637755 TACAGTACCA
* * ** *
41637765 ATGCCATATCCCAGATATGGTCTTACATGTAATCTTGTATTG
1 ATGCCATATGCCAGATATGGTCTTACACGTAATCTCATATCG
*
41637807 ATGCCA-ATAGCCCAGCTATGGTCTTACACG-AAGTCTCATATCG
1 ATGCCATAT-G-CCAGATATGGTCTTACACGTAA-TCTCATATCG
*
41637850 ATGCCATATGCCAGATATGGTCTTATACGTAATCTCA
1 ATGCCATATGCCAGATATGGTCTTACACGTAATCTCA
41637887 GTAATCCTAA
Statistics
Matches: 67, Mismatches: 8, Indels: 10
0.79 0.09 0.12
Matches are distributed among these distances:
41 2 0.03
42 30 0.45
43 33 0.49
44 2 0.03
ACGTcount: A:0.28, C:0.23, G:0.17, T:0.32
Consensus pattern (42 bp):
ATGCCATATGCCAGATATGGTCTTACACGTAATCTCATATCG
Found at i:41643994 original size:38 final size:38
Alignment explanation
Indices: 41643943--41644019 Score: 145
Period size: 38 Copynumber: 2.0 Consensus size: 38
41643933 TGGTAAGTTA
41643943 AATTCTAAATTATACGAACTTACGAAGATTAAATGCTT
1 AATTCTAAATTATACGAACTTACGAAGATTAAATGCTT
*
41643981 AATTCTAAATTATACGAACTTACTAAGATTAAATGCTT
1 AATTCTAAATTATACGAACTTACGAAGATTAAATGCTT
41644019 A
1 A
41644020 CTCTGTGTTA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.43, C:0.13, G:0.09, T:0.35
Consensus pattern (38 bp):
AATTCTAAATTATACGAACTTACGAAGATTAAATGCTT
Found at i:41645864 original size:40 final size:40
Alignment explanation
Indices: 41645779--41645929 Score: 134
Period size: 40 Copynumber: 3.8 Consensus size: 40
41645769 AATTGAATGA
* * *
41645779 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGATA-TAC
* * *
41645819 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAG-TGGCTAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGAT--ATAC
*
41645860 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGATATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGATATAC
*
41645899 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
41645930 ACGTGATTAT
Statistics
Matches: 91, Mismatches: 11, Indels: 18
0.76 0.09 0.15
Matches are distributed among these distances:
39 5 0.05
40 82 0.90
41 4 0.04
ACGTcount: A:0.27, C:0.23, G:0.26, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGATATAC
Found at i:41645943 original size:40 final size:40
Alignment explanation
Indices: 41645815--41645945 Score: 158
Period size: 40 Copynumber: 3.3 Consensus size: 40
41645805 TATGCTGGAA
* * *
41645815 ATTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
** * *
41645855 GCTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGAT-
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG-TG
*
41645895 ATTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTG
41645935 ATTATATCCGG
1 ATTATATCCGG
41645946 TTATATTCCG
Statistics
Matches: 75, Mismatches: 13, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
39 2 0.03
40 72 0.96
41 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
Found at i:41648048 original size:39 final size:40
Alignment explanation
Indices: 41647990--41648090 Score: 132
Period size: 39 Copynumber: 2.5 Consensus size: 40
41647980 AAATTGAATG
* *
41647990 ATATCCGGGCTAAGCCCCGAAGACAATTATGCT-GAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * * *
41648029 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
41648069 ATATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
41648091 GCATTCGTGC
Statistics
Matches: 53, Mismatches: 8, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
39 29 0.55
40 24 0.45
ACGTcount: A:0.31, C:0.23, G:0.25, T:0.22
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:41648083 original size:40 final size:40
Alignment explanation
Indices: 41647990--41648172 Score: 181
Period size: 40 Copynumber: 4.6 Consensus size: 40
41647980 AAATTGAATG
* * * * *
41647990 ATATCCGGGCTAAGCCCCGAAGACAATTATGCT-GAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
41648029 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
41648069 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTAGTT
* * * * * *
41648109 AAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGTG
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* * *
41648149 ATATCCGGGTTAAGTCCCGTAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
41648173 CTTGGTGCGG
Statistics
Matches: 121, Mismatches: 20, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
39 32 0.26
40 87 0.72
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
Found at i:41651895 original size:46 final size:46
Alignment explanation
Indices: 41651837--41652147 Score: 167
Period size: 46 Copynumber: 6.6 Consensus size: 46
41651827 TATGTTTGCT
*
41651837 AGTGTAAAACATGTCTGGGACATGCATCGGCCACATTATGA-GAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCC-CATTATGACGAGCC
* * *
41651883 AGTGTAAGACATGTCTGGGACATGCAACGGCCTCGAGATAT-ACAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCC-C-A-TTATGACGAGCC
* * * *
41651931 AGCGTAAGACATGTCTGAGACATGCGTCGG--CATTGA-GACGAAAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCCATT-ATGACG--AGCC
* * * * *
41651977 AGTGTAAGACATGTCTGGGACATGCATCAGCCTTGAGATAT-ACAAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCC--CA-TTATGACGAGCC
* * * * * * *
41652025 AGTGTAAGACCTGTCTAGGACATGGCTTCAG--C-TTGTTG-TGTGCC
1 AGTGTAAGACATGTCTGGGACAT-GCATCGGCCCATT-ATGACGAGCC
* * *
41652069 AGTGTAAGACCTGTCTGGGACATGGCATCGACACCAATAGATGA-GAGCC
1 AGTGTAAGACATGTCTGGGACAT-GCATCGGC-CC-AT-TATGACGAGCC
* *
41652118 ATTGTAAGACCTGTCTGGGACATGGCATCG
1 AGTGTAAGACATGTCTGGGACAT-GCATCG
41652148 ATCTCGATAT
Statistics
Matches: 205, Mismatches: 37, Indels: 43
0.72 0.13 0.15
Matches are distributed among these distances:
43 2 0.01
44 34 0.17
45 1 0.00
46 60 0.29
47 3 0.01
48 58 0.28
49 42 0.20
50 4 0.02
51 1 0.00
ACGTcount: A:0.28, C:0.21, G:0.28, T:0.23
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCCATTATGACGAGCC
Found at i:41651953 original size:48 final size:48
Alignment explanation
Indices: 41651837--41652048 Score: 195
Period size: 46 Copynumber: 4.5 Consensus size: 48
41651827 TATGTTTGCT
* * * *
41651837 AGTGTAAAACATGTCTGGGACATGCATCGGCC---ACATTATGA-GAGCC
1 AGTGTAAGACATGTCTGAGACATGCATCGGCCTTGAGA-TAT-ACAAGCC
* * *
41651883 AGTGTAAGACATGTCTGGGACATGCAACGGCCTCGAGATATACAAGCC
1 AGTGTAAGACATGTCTGAGACATGCATCGGCCTTGAGATATACAAGCC
* * * ** *
41651931 AGCGTAAGACATGTCTGAGACATGCGTCGGCATTGAGA-CGA-AAGCT
1 AGTGTAAGACATGTCTGAGACATGCATCGGCCTTGAGATATACAAGCC
* * *
41651977 AGTGTAAGACATGTCTGGGACATGCATCAGCCTTGAGATATACAAGCT
1 AGTGTAAGACATGTCTGAGACATGCATCGGCCTTGAGATATACAAGCC
*
41652025 AGTGTAAGACCTGTCT-AGGACATG
1 AGTGTAAGACATGTCTGA-GACATG
41652049 GCTTCAGCTT
Statistics
Matches: 137, Mismatches: 22, Indels: 12
0.80 0.13 0.07
Matches are distributed among these distances:
46 67 0.49
47 3 0.02
48 65 0.47
49 2 0.01
ACGTcount: A:0.31, C:0.20, G:0.27, T:0.22
Consensus pattern (48 bp):
AGTGTAAGACATGTCTGAGACATGCATCGGCCTTGAGATATACAAGCC
Found at i:41652146 original size:142 final size:145
Alignment explanation
Indices: 41651979--41652240 Score: 329
Period size: 142 Copynumber: 1.8 Consensus size: 145
41651969 CGAAAGCTAG
* * * *
41651979 TGTAAGACATGTCTGGGACATGCATC-AGCCTTGAGATATACAAGCTAGTGTAAGACCTGTCTAG
1 TGTAAGACATGTCTGGGACATGCATCGA-CCTCGAGATACAAAAGCTAGTGTAAGACCTATCTAG
* * * *
41652043 GACATGGCTTC-AGC-TTGTTGTG-T-GCCAGTGTAAGACC-TGTCTGGGACATGGCATCGACAC
65 GACATGGCATCGA-CTTTGATGTGCTAGCCAATATAAGACCATGTCTGGGACATGGCATCGACAC
41652103 CAATAGATGAGAGCCAT
129 CAATAGATGAGAGCCAT
* * * * *
41652120 TGTAAGACCTGTCTGGGACATGGCATCGATCTCGATATACAAAAGTTAGTGTAAGACCTATCTGG
1 TGTAAGACATGTCTGGGACAT-GCATCGACCTCGAGATACAAAAGCTAGTGTAAGACCTATCTAG
*
41652185 GACGTGGCATCGACTTTGATGTGCTAGCCAATATAAGACCATGTCTGGGACATGGC
65 GACATGGCATCGACTTTGATGTGCTAGCCAATATAAGACCATGTCTGGGACATGGC
41652241 GTCAGCACCT
Statistics
Matches: 100, Mismatches: 14, Indels: 9
0.81 0.11 0.07
Matches are distributed among these distances:
141 20 0.20
142 43 0.43
143 9 0.09
144 1 0.01
145 12 0.12
146 15 0.15
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.26
Consensus pattern (145 bp):
TGTAAGACATGTCTGGGACATGCATCGACCTCGAGATACAAAAGCTAGTGTAAGACCTATCTAGG
ACATGGCATCGACTTTGATGTGCTAGCCAATATAAGACCATGTCTGGGACATGGCATCGACACCA
ATAGATGAGAGCCAT
Found at i:41652173 original size:49 final size:48
Alignment explanation
Indices: 41652066--41652198 Score: 151
Period size: 49 Copynumber: 2.7 Consensus size: 48
41652056 CTTGTTGTGT
* *
41652066 GCCAGTGTAAGACCTGTCTGGGACATGGCATCGACACCAATAGATGAGA
1 GCCAGTGTAAGACCTGTCTGGGACATGGCATCGACACCAATACA-GAAA
* * *
41652115 GCCATTGTAAGACCTGTCTGGGACATGGCATCGATCTCGATATACA-AAA
1 GCCAGTGTAAGACCTGTCTGGGACATGGCATCGA-CACCA-ATACAGAAA
** * *
41652164 GTTAGTGTAAGACCTATCTGGGACGTGGCATCGAC
1 GCCAGTGTAAGACCTGTCTGGGACATGGCATCGAC
41652199 TTTGATGTGC
Statistics
Matches: 72, Mismatches: 10, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
48 1 0.01
49 64 0.89
50 3 0.04
51 4 0.06
ACGTcount: A:0.29, C:0.22, G:0.27, T:0.23
Consensus pattern (48 bp):
GCCAGTGTAAGACCTGTCTGGGACATGGCATCGACACCAATACAGAAA
Found at i:41656222 original size:29 final size:29
Alignment explanation
Indices: 41656190--41656324 Score: 155
Period size: 29 Copynumber: 4.7 Consensus size: 29
41656180 ATACCCTCCG
** * *
41656190 AGCTCGCACACCCAGTGCCGTATTTTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
* * * *
41656219 AGCTTGCACACATAGTGTCATATTTTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
*
41656248 AGCAT-GCACACTTAGTGCCTTATATTTCC
1 AGC-TCGCACACTTAGTGCCATATATTTCC
*
41656277 AGCACGCACACTTAGTGCCATATATTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
*
41656306 AGCACGCACACTTAGTGCC
1 AGCTCGCACACTTAGTGCC
41656325 GATCTCGTCA
Statistics
Matches: 93, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
29 92 0.99
30 1 0.01
ACGTcount: A:0.24, C:0.31, G:0.16, T:0.30
Consensus pattern (29 bp):
AGCTCGCACACTTAGTGCCATATATTTCC
Found at i:41656257 original size:58 final size:58
Alignment explanation
Indices: 41656136--41656325 Score: 179
Period size: 58 Copynumber: 3.3 Consensus size: 58
41656126 TACTCGATTT
* * * *** *
41656136 CGCACACTTAGTGCCACGTA-ATTT-AAGCCCGCACACACAGTGCCATA-CCCTCCGAGCT
1 CGCACACTTAGTG-C-CGTATATTTCCAGCACGCACACATAGTGCCATATATTTCC-AGCA
** * ** * *
41656194 CGCACACCCAGTGCCGTATTTTTCCAGCTTGCACACATAGTGTCATATTTTTCCAGCA
1 CGCACACTTAGTGCCGTATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCA
* * *
41656252 TGCACACTTAGTGCCTTATATTTCCAGCACGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCGTATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCA
41656310 CGCACACTTAGTGCCG
1 CGCACACTTAGTGCCG
41656326 ATCTCGTCAC
Statistics
Matches: 105, Mismatches: 24, Indels: 6
0.78 0.18 0.04
Matches are distributed among these distances:
56 4 0.04
57 4 0.04
58 94 0.90
59 3 0.03
ACGTcount: A:0.24, C:0.33, G:0.16, T:0.26
Consensus pattern (58 bp):
CGCACACTTAGTGCCGTATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCA
Found at i:41664336 original size:28 final size:29
Alignment explanation
Indices: 41664305--41664359 Score: 76
Period size: 28 Copynumber: 1.9 Consensus size: 29
41664295 TCGCACACCC
* *
41664305 AGTGCCGTATTTTT-CAGCTTGCACACAT
1 AGTGCCATATTTTTCCAGCATGCACACAT
*
41664333 AGTGTCATATTTTTCCAGCATGCACAC
1 AGTGCCATATTTTTCCAGCATGCACAC
41664360 TTAGGGCAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
28 12 0.52
29 11 0.48
ACGTcount: A:0.24, C:0.25, G:0.16, T:0.35
Consensus pattern (29 bp):
AGTGCCATATTTTTCCAGCATGCACACAT
Found at i:41675289 original size:48 final size:48
Alignment explanation
Indices: 41675181--41675443 Score: 257
Period size: 48 Copynumber: 5.6 Consensus size: 48
41675171 TGATATGTGT
* * * * * *
41675181 GCTATTGTAAGACATGTCTGGGACATGCATCAGCCAC-A-TTATGA-GA
1 GCTAGTGTAAGACATGTCTGGGACATGCAACGGCCTCGAGATAT-ACAA
* *
41675227 GCCAGTGTAAGACATGTTTGGGACATGCAACGGCCTCGAGATATACAA
1 GCTAGTGTAAGACATGTCTGGGACATGCAACGGCCTCGAGATATACAA
* *
41675275 GCCAGTGTAAGACATGTCTGGGACATGCAATGGCCTCGAGATATACAA
1 GCTAGTGTAAGACATGTCTGGGACATGCAACGGCCTCGAGATATACAA
* *** * * ** *
41675323 GCTAGTGTAAGACATGTCTAGGACATGTGTCGGCATTGAGA-CGA-GA
1 GCTAGTGTAAGACATGTCTGGGACATGCAACGGCCTCGAGATATACAA
* * * *
41675369 GCTAGTGTAAGACATGTCTGGGATATGCATCAGCCTCGAGATATATAA
1 GCTAGTGTAAGACATGTCTGGGACATGCAACGGCCTCGAGATATACAA
* *
41675417 GCTGGTGTAAGACTTGTCTGGGACATG
1 GCTAGTGTAAGACATGTCTGGGACATG
41675444 GCGTCAGCTT
Statistics
Matches: 178, Mismatches: 34, Indels: 8
0.81 0.15 0.04
Matches are distributed among these distances:
46 66 0.37
47 4 0.02
48 108 0.61
ACGTcount: A:0.29, C:0.18, G:0.28, T:0.24
Consensus pattern (48 bp):
GCTAGTGTAAGACATGTCTGGGACATGCAACGGCCTCGAGATATACAA
Found at i:41675529 original size:49 final size:48
Alignment explanation
Indices: 41675464--41675635 Score: 161
Period size: 49 Copynumber: 3.5 Consensus size: 48
41675454 GTTGTGTGCT
*
41675464 AGTGTAAGACCTGTCTGGGACATGGCATCGACACCGATAGATGAGAGCC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGAC-CCGATAGATGAAAGCC
* * * * * *
41675513 ATTGTAAGACCTGTCTGGGACACGACATC-AGCCTCGATATACGAAAGTC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGA-CC-CGATAGATGAAAGCC
* *** **
41675562 AGTGTAAGACCTGTCTGGGACGTGGCATCGATTTTGAT-G-TGCTAGCC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGA-CCCGATAGATGAAAGCC
41675609 AGTGTAAGACCATGTCTGGGACATGGC
1 AGTGTAAGACC-TGTCTGGGACATGGC
41675636 GTCAGCACCT
Statistics
Matches: 98, Mismatches: 21, Indels: 9
0.77 0.16 0.07
Matches are distributed among these distances:
47 15 0.15
48 16 0.16
49 66 0.67
50 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.29, T:0.23
Consensus pattern (48 bp):
AGTGTAAGACCTGTCTGGGACATGGCATCGACCCGATAGATGAAAGCC
Found at i:41675542 original size:142 final size:145
Alignment explanation
Indices: 41675186--41675635 Score: 364
Period size: 142 Copynumber: 3.2 Consensus size: 145
41675176 TGTGTGCTAT
* * *
41675186 TGTAAGA-CATGTCTGGGACAT-GCATCAGCCA-C-AT-TATGAGAGCCAGTGTAAGACATGTTT
1 TGTAAGACCATGTCTGGGACATGGCATC-GACACCGATAGATGAGAGCCAGTGTAAGACATGTCT
* * * * * *
41675246 GGGACATGCAACGGCCTCGAGATA-TACAAGCCAGTGTAAGACATGTCTGGGACAT-GCAAT-G-
65 GGGACACGCATCAGCCTCGAGATACGA-AAGTCAGTGTAAGACCTGTCTGGGACATGGC-ATCGA
* * * * *
41675307 GCCTCGAGATATACAAGCTAG
128 G-CT--TGATGTGCTAGCCAG
* * ** * *
41675328 TGTAAGA-CATGTCTAGGACATGTG--TCGGCATTG--AGACGAGAGCTAGTGTAAGACATGTCT
1 TGTAAGACCATGTCTGGGACATG-GCATCGACACCGATAGATGAGAGCCAGTGTAAGACATGTCT
* * * * * *
41675388 GGGATATGCATCAGCCTCGAGATA-TATAAG-CTGGTGTAAGACTTGTCTGGGACATGGCGTC-A
65 GGGACACGCATCAGCCTCGAGATACGA-AAGTC-AGTGTAAGACCTGTCTGGGACATGGCATCGA
* *
41675450 GCTTGTTGTG-T-GCTAG
128 GCTTGATGTGCTAGCCAG
* *
41675466 TGTAAGACC-TGTCTGGGACATGGCATCGACACCGATAGATGAGAGCCATTGTAAGACCTGTCTG
1 TGTAAGACCATGTCTGGGACATGGCATCGACACCGATAGATGAGAGCCAGTGTAAGACATGTCTG
* * **
41675530 GGACACGACATCAGCCTCGATATACGAAAGTCAGTGTAAGACCTGTCTGGGACGTGGCATCGATT
66 GGACACG-CATCAGCCTCGAGATACGAAAGTCAGTGTAAGACCTGTCTGGGACATGGCATCGAGC
41675595 TTGATGTGCTAGCCAG
130 TTGATGTGCTAGCCAG
41675611 TGTAAGACCATGTCTGGGACATGGC
1 TGTAAGACCATGTCTGGGACATGGC
41675636 GTCAGCACCT
Statistics
Matches: 248, Mismatches: 39, Indels: 38
0.76 0.12 0.12
Matches are distributed among these distances:
137 1 0.00
138 24 0.10
139 7 0.03
140 3 0.01
141 33 0.13
142 137 0.55
143 13 0.05
144 2 0.01
145 13 0.05
146 15 0.06
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (145 bp):
TGTAAGACCATGTCTGGGACATGGCATCGACACCGATAGATGAGAGCCAGTGTAAGACATGTCTG
GGACACGCATCAGCCTCGAGATACGAAAGTCAGTGTAAGACCTGTCTGGGACATGGCATCGAGCT
TGATGTGCTAGCCAG
Found at i:41686203 original size:49 final size:49
Alignment explanation
Indices: 41686145--41686737 Score: 775
Period size: 49 Copynumber: 11.9 Consensus size: 49
41686135 GTATGAGATG
*
41686145 TATATATGTGATACGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
*
41686194 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAACGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
* *
41686243 TATATATGTGATAAGGCCTAATGGCCAGTGTGATGAATGTGAAAGAGTA
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
* * * *
41686292 TAAACATGTGATAAGGCCTAATGGCCAATGTGATGAATGTAAAAGAG--
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
41686339 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
*
41686388 TATACATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
* *
41686437 TATACATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAG--
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
*
41686484 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTA
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
* *
41686533 TATACATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAG--
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
* ** * * *
41686580 TATATATGTGATAAGGCATATACATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGA
1 TATATATGTGATAAGGC--CTA-ATG-GCCAATG--TGAT-G--AATGTGA--AA-GTG---TA
* * *
41686644 GTATATATGTGATAAGGCCTAATGGTCGATGTGATGAATGTGAAGGTGTA
1 -TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
**
41686694 TATATATGTGATAAGGCCTAATGGCTGATGTGATGAATGTGAAA
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
41686738 TATATGTGTG
Statistics
Matches: 487, Mismatches: 35, Indels: 44
0.86 0.06 0.08
Matches are distributed among these distances:
47 105 0.22
49 319 0.66
50 4 0.01
51 4 0.01
53 6 0.01
54 2 0.00
56 14 0.03
58 3 0.01
59 5 0.01
61 3 0.01
62 3 0.01
63 2 0.00
65 17 0.03
ACGTcount: A:0.35, C:0.09, G:0.27, T:0.28
Consensus pattern (49 bp):
TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
Found at i:41686389 original size:96 final size:95
Alignment explanation
Indices: 41686144--41686737 Score: 744
Period size: 96 Copynumber: 6.0 Consensus size: 95
41686134 TGTATGAGAT
* *
41686144 GTATATATGTGATACGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAG
1 GTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTATA-ATATGTGATAAG
* *
41686209 GCCTAATGGCCAATGTGATGAACGTGAAAGT
65 GCCTAATGGCCAATGTGATGAATGTGAAAGA
* *
41686240 GTATATATATGTGATAAGGCCTAATGGCCAGTGTGATGAATGTGAAAGAGTATAAACATGTGATA
1 G--TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTAT-AATATGTGATA
*
41686305 AGGCCTAATGGCCAATGTGATGAATGTAAAAGA
63 AGGCCTAATGGCCAATGTGATGAATGTGAAAGA
* *
41686338 GTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATACATGTGATAAG
1 GTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTATA-ATATGTGATAAG
*
41686403 GCCTAATGGCCAATGTGATGAATGTGAAAGT
65 GCCTAATGGCCAATGTGATGAATGTGAAAGA
41686434 GTATATACATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTAT-ATATGTGATAA
1 GTATAT--ATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTATAATATGTGATAA
41686498 GGCCTAATGGCCAATGTGATGAATGTGAAAGA
64 GGCCTAATGGCCAATGTGATGAATGTGAAAGA
41686530 GTATATACATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTAT-ATATGTGATAA
1 GTATAT--ATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTATAATATGTGATAA
* *
41686594 GGCATATACATGTGATAAGGCCTAATG-GCCAATGTGATGAATGTGAAAGA
64 GGC-----C---T-A-ATGGCC-AATGTG---ATG-A----ATGTGAAAGA
* * * *
41686644 GTATATATGTGATAAGGCCTAATGGTCGATGTGATGAATGTGAAGGTGTATATATATGTGATAAG
1 GTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTATA-ATATGTGATAAG
**
41686709 GCCTAATGGCTGATGTGATGAATGTGAAA
65 GCCTAATGGCCAATGTGATGAATGTGAAA
41686738 TATATGTGTG
Statistics
Matches: 446, Mismatches: 24, Indels: 56
0.85 0.05 0.11
Matches are distributed among these distances:
95 1 0.00
96 212 0.48
98 131 0.29
99 1 0.00
101 4 0.01
103 3 0.01
104 6 0.01
105 2 0.00
106 7 0.02
107 4 0.01
109 4 0.01
112 41 0.09
114 30 0.07
ACGTcount: A:0.35, C:0.09, G:0.27, T:0.28
Consensus pattern (95 bp):
GTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTATAATATGTGATAAGG
CCTAATGGCCAATGTGATGAATGTGAAAGA
Found at i:41686407 original size:145 final size:144
Alignment explanation
Indices: 41686150--41686737 Score: 811
Period size: 145 Copynumber: 3.9 Consensus size: 144
41686140 AGATGTATAT
* *
41686150 ATGTGATACGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAA
1 ATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAG--TATATATGTGATAAGGCCTAA
* * *
41686215 TGGCCAATGTGATGAACGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAGTGTGATGAA
64 TGGCCAATGTGATGAATGTGAAAGTGTATATACATGTGATAAGGCCTAATGGCCAATGTGATGAA
41686280 TGTGAAAGAGTATAAAC
129 TGTGAAAGAGTAT-AAC
*
41686297 ATGTGATAAGGCCTAATGGCCAATGTGATGAATGTAAAAGAGTATATATGTGATAAGGCCTAATG
1 ATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTATATATGTGATAAGGCCTAATG
41686362 GCCAATGTGATGAATGTGAAAGTGTATATACATGTGATAAGGCCTAATGGCCAATGTGATGAATG
66 GCCAATGTGATGAATGTGAAAGTGTATATACATGTGATAAGGCCTAATGGCCAATGTGATGAATG
*
41686427 TGAAAGTGTATATAC
131 TGAAAGAGTATA-AC
41686442 ATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTATATATGTGATAAGGCCTAATG
1 ATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTATATATGTGATAAGGCCTAATG
*
41686507 GCCAATGTGATGAATGTGAAAGAGTATATACATGTGATAAGGCCTAATGGCCAATGTGATGAATG
66 GCCAATGTGATGAATGTGAAAGTGTATATACATGTGATAAGGCCTAATGGCCAATGTGATGAATG
*
41686572 TGAAAGAGTAT-AT
131 TGAAAGAGTATAAC
*
41686585 ATGTGATAAGGCATATACATGTGATAAGGCCTAATG-GCCAATGTGATGAATGTGAAAGAGTATA
1 ATGTGATAAGGC-----C---T-A-ATGGCC-AATGTG---A--T---GAATGTGAAAGAGTATA
* * * *
41686649 TATGTGATAAGGCCTAATGGTCGATGTGATGAATGTGAAGGTGTATATATATGTGATAAGGCCTA
47 TATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATACATGTGATAAGGCCTA
**
41686714 ATGGCTGATGTGATGAATGTGAAA
112 ATGGCCAATGTGATGAATGTGAAA
41686738 TATATGTGTG
Statistics
Matches: 402, Mismatches: 19, Indels: 26
0.90 0.04 0.06
Matches are distributed among these distances:
143 13 0.03
144 1 0.00
145 235 0.58
147 39 0.10
148 1 0.00
151 1 0.00
152 1 0.00
153 6 0.01
154 4 0.01
156 1 0.00
158 1 0.00
161 99 0.25
ACGTcount: A:0.35, C:0.09, G:0.27, T:0.28
Consensus pattern (144 bp):
ATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTATATATGTGATAAGGCCTAATG
GCCAATGTGATGAATGTGAAAGTGTATATACATGTGATAAGGCCTAATGGCCAATGTGATGAATG
TGAAAGAGTATAAC
Found at i:41686606 original size:18 final size:18
Alignment explanation
Indices: 41686580--41686614 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
41686570 TGTGAAAGAG
*
41686580 TATATATGTGATAAGGCA
1 TATACATGTGATAAGGCA
41686598 TATACATGTGATAAGGC
1 TATACATGTGATAAGGC
41686615 CTAATGGCCA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.37, C:0.09, G:0.23, T:0.31
Consensus pattern (18 bp):
TATACATGTGATAAGGCA
Found at i:41686606 original size:65 final size:65
Alignment explanation
Indices: 41686532--41686661 Score: 260
Period size: 65 Copynumber: 2.0 Consensus size: 65
41686522 GTGAAAGAGT
41686532 ATATACATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTATATATGTGATAAGGC
1 ATATACATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTATATATGTGATAAGGC
41686597 ATATACATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTATATATGTGATAAGGC
1 ATATACATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTATATATGTGATAAGGC
41686662 CTAATGGTCG
Statistics
Matches: 65, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
65 65 1.00
ACGTcount: A:0.37, C:0.09, G:0.26, T:0.28
Consensus pattern (65 bp):
ATATACATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTATATATGTGATAAGGC
Found at i:41686617 original size:114 final size:113
Alignment explanation
Indices: 41686484--41686710 Score: 375
Period size: 114 Copynumber: 2.0 Consensus size: 113
41686474 TGTGAAAGAG
*
41686484 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTATATACATGTGATAAGG
1 TATACATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTATAT--ATGTGATAAGG
41686549 CCTAATGGCCAATGTGATGAATGTGAAAGAG-TATATATGTGATAAGGCA
64 CCTAATGGCCAATGTGATGAATGTGAAAGAGATATATATGTGATAAGGCA
41686598 TATACATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTATATATGTGATAAGGCC
1 TATACATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTATATATGTGATAAGGCC
* * * *
41686663 TAATGGTCGATGTGATGAATGTGAAGGTGTATATATATGTGATAAGGC
66 TAATGGCCAATGTGATGAATGTGAAAGAG-ATATATATGTGATAAGGC
41686711 CTAATGGCTG
Statistics
Matches: 106, Mismatches: 5, Indels: 4
0.92 0.04 0.03
Matches are distributed among these distances:
112 38 0.36
114 68 0.64
ACGTcount: A:0.35, C:0.08, G:0.27, T:0.29
Consensus pattern (113 bp):
TATACATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTATATATGTGATAAGGCC
TAATGGCCAATGTGATGAATGTGAAAGAGATATATATGTGATAAGGCA
Found at i:41686617 original size:161 final size:161
Alignment explanation
Indices: 41686436--41686737 Score: 541
Period size: 161 Copynumber: 1.9 Consensus size: 161
41686426 GTGAAAGTGT
41686436 ATATACATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTATATATGTGATAAGGC
1 ATATACATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTATATATGTGATAAGGC
41686501 CTAATGGCCAATGTGATGAATGTGAAAGAGTATATACATGTGATAAGGCCTAATGGCCAATGTGA
66 CTAATGGCCAATGTGATGAATGTGAAAGAGTATATACATGTGATAAGGCCTAATGGCCAATGTGA
41686566 TGAATGTGAAAGAGTATATATGTGATAAGGC
131 TGAATGTGAAAGAGTATATATGTGATAAGGC
41686597 ATATACATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTATATATGTGATAAGGC
1 ATATACATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTATATATGTGATAAGGC
* * * * * **
41686662 CTAATGGTCGATGTGATGAATGTGAAGGTGTATATATATGTGATAAGGCCTAATGGCTGATGTGA
66 CTAATGGCCAATGTGATGAATGTGAAAGAGTATATACATGTGATAAGGCCTAATGGCCAATGTGA
41686727 TGAATGTGAAA
131 TGAATGTGAAA
41686738 TATATGTGTG
Statistics
Matches: 134, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
161 134 1.00
ACGTcount: A:0.35, C:0.09, G:0.27, T:0.28
Consensus pattern (161 bp):
ATATACATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTATATATGTGATAAGGC
CTAATGGCCAATGTGATGAATGTGAAAGAGTATATACATGTGATAAGGCCTAATGGCCAATGTGA
TGAATGTGAAAGAGTATATATGTGATAAGGC
Found at i:41686660 original size:47 final size:48
Alignment explanation
Indices: 41686597--41686737 Score: 212
Period size: 47 Copynumber: 2.9 Consensus size: 48
41686587 GTGATAAGGC
* *
41686597 ATATACATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAG
1 ATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGAG
* * *
41686645 -TATATATGTGATAAGGCCTAATGGTCGATGTGATGAATGTGAAGGTG
1 ATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGAG
*
41686692 TATATATATGTGATAAGGCCTAATGGCTGATGTGATGAATGTGAAA
1 -ATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
41686738 TATATGTGTG
Statistics
Matches: 83, Mismatches: 8, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
47 42 0.51
49 41 0.49
ACGTcount: A:0.34, C:0.08, G:0.28, T:0.30
Consensus pattern (48 bp):
ATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGAG
Found at i:41686782 original size:57 final size:55
Alignment explanation
Indices: 41686696--41686879 Score: 189
Period size: 48 Copynumber: 3.5 Consensus size: 55
41686686 AAGGTGTATA
* * *
41686696 TATATGTGATAAGGCCTAATGGCTGATGTGATGAATGTGAAATATATGTGTGATATG
1 TATATGTGGTAAAGCCGAATGGCT-ATGTGAT-AATGTGAAATATATGTGTGATATG
*
41686753 TATATGTGGTAAAGCCGAA--G----G-GCTAATGTGAAATATATGTGTGATATG
1 TATATGTGGTAAAGCCGAATGGCTATGTGATAATGTGAAATATATGTGTGATATG
41686801 TATATGTGGTAAAGCCGAATGGC-------TAATGTGAAATATATGTGTGATATG
1 TATATGTGGTAAAGCCGAATGGCTATGTGATAATGTGAAATATATGTGTGATATG
* *
41686849 TATGTGTGGTAAAGACGAATGGCTAATGTGA
1 TATATGTGGTAAAGCCGAATGGCT-ATGTGA
41686880 ATGTTGTAAC
Statistics
Matches: 110, Mismatches: 6, Indels: 23
0.79 0.04 0.17
Matches are distributed among these distances:
48 89 0.81
49 2 0.02
50 2 0.02
55 1 0.01
57 16 0.15
ACGTcount: A:0.33, C:0.06, G:0.29, T:0.33
Consensus pattern (55 bp):
TATATGTGGTAAAGCCGAATGGCTATGTGATAATGTGAAATATATGTGTGATATG
Found at i:41686786 original size:48 final size:48
Alignment explanation
Indices: 41686729--41686880 Score: 277
Period size: 48 Copynumber: 3.2 Consensus size: 48
41686719 TGATGTGATG
*
41686729 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAAGGGCT
1 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
41686777 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
1 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
* *
41686825 AATGTGAAATATATGTGTGATATGTATGTGTGGTAAAGACGAATGGCT
1 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
41686873 AATGTGAA
1 AATGTGAA
41686881 TGTTGTAACA
Statistics
Matches: 101, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
48 101 1.00
ACGTcount: A:0.34, C:0.05, G:0.28, T:0.32
Consensus pattern (48 bp):
AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
Found at i:41686974 original size:37 final size:37
Alignment explanation
Indices: 41686920--41687010 Score: 164
Period size: 37 Copynumber: 2.4 Consensus size: 37
41686910 AACTTGGAAA
*
41686920 TATGTTCCGGGTGAGACCCGATGACTACGTGTGGAGAT
1 TATG-TCCGGGTAAGACCCGATGACTACGTGTGGAGAT
41686958 TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
1 TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
41686995 TATGTCCGGGTAAGAC
1 TATGTCCGGGTAAGAC
41687011 TTCGTAATAA
Statistics
Matches: 52, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
37 48 0.92
38 4 0.08
ACGTcount: A:0.23, C:0.19, G:0.33, T:0.25
Consensus pattern (37 bp):
TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
Found at i:41688752 original size:55 final size:54
Alignment explanation
Indices: 41688616--41688811 Score: 182
Period size: 55 Copynumber: 3.6 Consensus size: 54
41688606 TTCCTTTTTA
* * * * * * *
41688616 AACTTACCATTTCCATGTCATGGCATGGTCTTACGTG-GTATCCTTGCCTTAT-G
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGAG-ATCCTTGCCTTGTAG
* * * *
41688669 AACTCACCATTGCCATGCCTTGGA-ATGGTCTTACATGGGATCTTTGCCTTGTAG
1 AACTTACCAATGCCATGCCTT-GACATGGTCTTACATGAGATCCTTGCCTTGTAG
** * **
41688723 TAGTTTATCAATGCCATGCCTTGACATGGTCTTACATGATTTCCTTGCCTTGTAG
1 -AACTTACCAATGCCATGCCTTGACATGGTCTTACATGAGATCCTTGCCTTGTAG
* *
41688778 AACTTACCGATGCCATGCCTTGGCATGGTCTTAC
1 AACTTACCAATGCCATGCCTTGACATGGTCTTAC
41688812 TTGGTATCCT
Statistics
Matches: 116, Mismatches: 22, Indels: 9
0.79 0.15 0.06
Matches are distributed among these distances:
53 40 0.34
54 34 0.29
55 42 0.36
ACGTcount: A:0.20, C:0.24, G:0.20, T:0.36
Consensus pattern (54 bp):
AACTTACCAATGCCATGCCTTGACATGGTCTTACATGAGATCCTTGCCTTGTAG
Found at i:41688822 original size:54 final size:53
Alignment explanation
Indices: 41688616--41688822 Score: 218
Period size: 53 Copynumber: 3.8 Consensus size: 53
41688606 TTCCTTTTTA
* * * * *
41688616 AACTTACCATTTCCATGTCATGGCATGGTCTTACGTGGTATCCTTGCCTTAT-G
1 AACTTACCA-TGCCATGCCTTGGCATGGTCTTACATGGTATCCTTGCCTTGTAG
* * * *
41688669 AACTCACCATTGCCATGCCTTGGAATGGTCTTACATGGGATCTTTGCCTTGTAG
1 AACTTACCA-TGCCATGCCTTGGCATGGTCTTACATGGTATCCTTGCCTTGTAG
** * * * *
41688723 TAGTTTATCAATGCCATGCCTTGACATGGTCTTACATGATTTCCTTGCCTTGTAG
1 -AACTTA-CCATGCCATGCCTTGGCATGGTCTTACATGGTATCCTTGCCTTGTAG
*
41688778 AACTTACCGATGCCATGCCTTGGCATGGTCTTACTTGGTATCCTT
1 AACTTACC-ATGCCATGCCTTGGCATGGTCTTACATGGTATCCTT
41688823 AAACTCTAAT
Statistics
Matches: 124, Mismatches: 26, Indels: 7
0.79 0.17 0.04
Matches are distributed among these distances:
53 44 0.35
54 37 0.30
55 41 0.33
56 2 0.02
ACGTcount: A:0.19, C:0.24, G:0.20, T:0.37
Consensus pattern (53 bp):
AACTTACCATGCCATGCCTTGGCATGGTCTTACATGGTATCCTTGCCTTGTAG
Found at i:41688942 original size:2 final size:2
Alignment explanation
Indices: 41688935--41688961 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
41688925 TAAATTCACA
41688935 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
41688962 GATGCTGAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:41697112 original size:48 final size:48
Alignment explanation
Indices: 41697043--41697809 Score: 1250
Period size: 48 Copynumber: 16.0 Consensus size: 48
41697033 AGATAAATAT
*
41697043 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGTGAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
* *
41697091 ATATATGTGTGAAATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
*
41697139 ATATATGTGTGAAATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
**** *
41697187 ATATATACAAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
* *
41697235 ATATATGTGTGAAATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
* *
41697283 ATATATGTGTGAAATGTACATGTGGTAAAGCCGAATGGCGAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
41697331 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
*
41697379 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
*
41697427 ATATATGTGTGAAATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
* *
41697475 ATATATGTGTGAAATGTATATGTGGTAAAGCCGAAATGGGGAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCG-AATGGCGAATGTGAA
41697524 ATATATGTGTGATATG--TATGTGGTAAAGCCGAATGGCGAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
*
41697570 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
* *
41697618 ATATATGTGTGAAATGTATATGTGGTAAAGCCGAATGGAGAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
41697666 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
* * * *
41697714 ATATATATGAGATATGTATATGTCGTAAAGTCGAATGGCGAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
* * * * *
41697762 ATATGTATGAGATATGAATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
41697810 GGTTGTAACA
Statistics
Matches: 676, Mismatches: 40, Indels: 6
0.94 0.06 0.01
Matches are distributed among these distances:
46 30 0.04
47 15 0.02
48 602 0.89
49 29 0.04
ACGTcount: A:0.35, C:0.06, G:0.28, T:0.31
Consensus pattern (48 bp):
ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
Found at i:41697904 original size:37 final size:37
Alignment explanation
Indices: 41697854--41697961 Score: 198
Period size: 37 Copynumber: 2.9 Consensus size: 37
41697844 GGAAATATAT
41697854 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
41697891 TCCGGGTAAGACCCGATGACTACGTGTGGAGAGTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
41697928 TCCGGGTAAGACCCGATGACTTCGTGTGGAGATT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATT
41697962 TCGTCTGAGC
Statistics
Matches: 68, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 68 1.00
ACGTcount: A:0.23, C:0.19, G:0.33, T:0.24
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:41700774 original size:40 final size:40
Alignment explanation
Indices: 41700719--41700922 Score: 277
Period size: 40 Copynumber: 5.1 Consensus size: 40
41700709 TGAATGATAC
* * * *
41700719 CCGGGCTAAGCCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTG-TTATAT
*
41700759 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
1 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
41700799 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* *
41700839 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATA-
1 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* ** *
41700878 CCTGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CC-GGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
41700919 CCGG
1 CCGG
41700923 CTAAATTTCG
Statistics
Matches: 147, Mismatches: 14, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
39 2 0.01
40 141 0.96
41 4 0.03
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (40 bp):
CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
Found at i:41703865 original size:40 final size:40
Alignment explanation
Indices: 41703680--41703865 Score: 234
Period size: 40 Copynumber: 4.7 Consensus size: 40
41703670 GCTACTCGTT
* *
41703680 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
41703720 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
41703760 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAACTCGCA
* * * *
41703800 CGAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
41703841 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
41703866 CATCATTCGA
Statistics
Matches: 131, Mismatches: 12, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
39 3 0.02
40 118 0.90
41 10 0.08
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:41710789 original size:39 final size:40
Alignment explanation
Indices: 41710689--41710870 Score: 176
Period size: 40 Copynumber: 4.6 Consensus size: 40
41710679 TCGAATGATG
* * *
41710689 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGC-AAGTTACTAAA
* * * *
41710729 TCCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTCGTGCAAGTTACTAAA
41710769 TCCGGGCTAAG-CCCGAAGGCATT-GTGCAAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCAAGTTACTAAA
* * * **
41710807 CCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCGCTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCAAGTTACTA-AA
**
41710848 -CCGGGCTTCGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
41710871 TGAGCGAGTC
Statistics
Matches: 117, Mismatches: 19, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
38 22 0.19
39 23 0.20
40 63 0.54
41 9 0.08
ACGTcount: A:0.24, C:0.25, G:0.28, T:0.23
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCAAGTTACTAAA
Found at i:41710834 original size:78 final size:80
Alignment explanation
Indices: 41710689--41710870 Score: 210
Period size: 78 Copynumber: 2.3 Consensus size: 80
41710679 TCGAATGATG
* * * *
41710689 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATTC
1 TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
41710754 GTGCGAGTTAATAAA
66 GTGCGAGTTAATAAA
* **
41710769 TCCGGGCTAAG-CCCGAAGGCATTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCATT
***
41710831 CGTGCGAGTCGCTATAA
65 CGTGCGAGTTAATA-AA
**
41710848 -CCGGGCTTCGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
41710871 TGAGCGAGTC
Statistics
Matches: 87, Mismatches: 12, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
77 1 0.01
78 46 0.53
79 29 0.33
80 11 0.13
ACGTcount: A:0.24, C:0.25, G:0.28, T:0.23
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
GTGCGAGTTAATAAA
Found at i:41715106 original size:40 final size:40
Alignment explanation
Indices: 41715069--41715254 Score: 218
Period size: 40 Copynumber: 4.7 Consensus size: 40
41715059 GCTACTCGTT
*
41715069 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
* *
41715109 CAAATGCCTCCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
41715149 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCA
** * * * *
41715189 TGAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
41715230 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
41715255 CATCATTCGA
Statistics
Matches: 128, Mismatches: 14, Indels: 8
0.85 0.09 0.05
Matches are distributed among these distances:
39 3 0.02
40 114 0.89
41 11 0.09
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:41718129 original size:28 final size:28
Alignment explanation
Indices: 41718060--41718160 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
41718050 GACAAGATTG
* * * *
41718060 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
41718090 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
41718118 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
41718147 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
41718161 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:41726082 original size:28 final size:28
Alignment explanation
Indices: 41726013--41726113 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
41726003 GACAAGATTG
* * * *
41726013 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
41726043 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
41726071 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
41726100 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
41726114 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:41728425 original size:40 final size:40
Alignment explanation
Indices: 41728381--41728612 Score: 392
Period size: 40 Copynumber: 5.8 Consensus size: 40
41728371 GAGAATTGAG
*
41728381 AGTGATGTATCCGGACTAAGTTCCGAAGAACATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
41728421 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
*
41728461 AGTGATGTATTCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
* *
41728501 AGTGATGTATTCGGACTAAGTTCCGAAGAGCATTCGTGGT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
*
41728541 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
* * *
41728581 AGTGATGTATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCA
41728613 ATCATGCTGG
Statistics
Matches: 184, Mismatches: 8, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 184 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.27
Consensus pattern (40 bp):
AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
Found at i:41732309 original size:48 final size:48
Alignment explanation
Indices: 41732240--41733005 Score: 1302
Period size: 48 Copynumber: 16.0 Consensus size: 48
41732230 AGATAAATAT
*
41732240 ATATATGTGTGATATGTATATGTGGTAAAGCAGAATGGCGAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
*
41732288 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
*
41732336 ATATATGTGTGAAATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
** * *
41732384 ATATATACGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
*
41732432 ATATATGTGTGAAATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
*
41732480 ATATATGTGTGAAATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
41732528 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
*
41732576 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
* *
41732624 ATATATGTGTGAAATGTATTTGTGGTAAAGCCGAATGGCGAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
* *
41732672 ATATATGTGTGAAATGTATTTGTGGTAAAGCCGAATGGCGAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
41732720 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
41732768 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
*
41732816 ATATATGTGTGAAATGTATATGTGGTAAAGCCGAATGGCGAATGTG-A
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
*
41732863 A-ATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCAAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
* * *
41732910 ATATATATGAGATATGTATATGTCGTAAAGCCGAATGGCGAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
* * * * *
41732958 ATATGTATGAGATATGAATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
41733006 GGTTGTAACA
Statistics
Matches: 684, Mismatches: 32, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
46 42 0.06
47 4 0.01
48 638 0.93
ACGTcount: A:0.35, C:0.06, G:0.28, T:0.31
Consensus pattern (48 bp):
ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
Found at i:41733107 original size:37 final size:37
Alignment explanation
Indices: 41733050--41733157 Score: 180
Period size: 37 Copynumber: 2.9 Consensus size: 37
41733040 GGAAATATAT
*
41733050 TCCGGGAAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
41733087 TCTGGGTAAGACCCGATGACTACGTGTGGAGAGTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
41733124 TCCGGGTAAGACCCGATGACTTCGTGTGGAGATT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATT
41733158 TCGTCTGAGC
Statistics
Matches: 65, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 65 1.00
ACGTcount: A:0.24, C:0.19, G:0.33, T:0.24
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:41741050 original size:23 final size:23
Alignment explanation
Indices: 41741024--41741077 Score: 90
Period size: 23 Copynumber: 2.3 Consensus size: 23
41741014 CAGGGACACA
*
41741024 GGCGTGTGCATTGCCTTTACAAG
1 GGCGTGTGCATTGCCTCTACAAG
*
41741047 GGCGTGTGCATTGCCTCTACACG
1 GGCGTGTGCATTGCCTCTACAAG
41741070 GGCGTGTG
1 GGCGTGTG
41741078 AGGCTTAACT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
23 29 1.00
ACGTcount: A:0.13, C:0.24, G:0.35, T:0.28
Consensus pattern (23 bp):
GGCGTGTGCATTGCCTCTACAAG
Found at i:41745671 original size:38 final size:38
Alignment explanation
Indices: 41745620--41745694 Score: 141
Period size: 38 Copynumber: 2.0 Consensus size: 38
41745610 ATGATACAAC
41745620 AGTTTGTTCAGTTTGATGGTTTGCAGGATGAAGATCCT
1 AGTTTGTTCAGTTTGATGGTTTGCAGGATGAAGATCCT
*
41745658 AGTTTGTTTAGTTTGATGGTTTGCAGGATGAAGATCC
1 AGTTTGTTCAGTTTGATGGTTTGCAGGATGAAGATCC
41745695 CAACGCTCAC
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 36 1.00
ACGTcount: A:0.21, C:0.09, G:0.29, T:0.40
Consensus pattern (38 bp):
AGTTTGTTCAGTTTGATGGTTTGCAGGATGAAGATCCT
Found at i:41754744 original size:21 final size:21
Alignment explanation
Indices: 41754720--41754762 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
41754710 TACTACTTAT
*
41754720 TTTATAACTTTTACAAATAAG
1 TTTAAAACTTTTACAAATAAG
41754741 TTTAAAACTTTTACAAATAAG
1 TTTAAAACTTTTACAAATAAG
41754762 T
1 T
41754763 CCTTTTTGAC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.44, C:0.09, G:0.05, T:0.42
Consensus pattern (21 bp):
TTTAAAACTTTTACAAATAAG
Found at i:41759299 original size:22 final size:22
Alignment explanation
Indices: 41759271--41759315 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
41759261 GAACACAGAG
41759271 AGAGAACATTCACAATAAGATA
1 AGAGAACATTCACAATAAGATA
41759293 AGAGAACATTCACAATAAGATA
1 AGAGAACATTCACAATAAGATA
41759315 A
1 A
41759316 AAGTTCATCA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.56, C:0.13, G:0.13, T:0.18
Consensus pattern (22 bp):
AGAGAACATTCACAATAAGATA
Found at i:41760226 original size:22 final size:20
Alignment explanation
Indices: 41760201--41760241 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 20
41760191 ACTATTAAAG
41760201 ATTTTAAGAGTTTCTATTGATT
1 ATTTTAAGAG-TTCT-TTGATT
*
41760223 ATTTTATGAGTTCTTTGAT
1 ATTTTAAGAGTTCTTTGAT
41760242 GTTTGAAGGT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 5 0.28
21 4 0.22
22 9 0.50
ACGTcount: A:0.24, C:0.05, G:0.15, T:0.56
Consensus pattern (20 bp):
ATTTTAAGAGTTCTTTGATT
Found at i:41760913 original size:29 final size:29
Alignment explanation
Indices: 41760871--41760944 Score: 130
Period size: 29 Copynumber: 2.6 Consensus size: 29
41760861 ATAAGTTGAG
*
41760871 TTGGCTTCGAGCCATGCATATCGGATGAT
1 TTGGCTTCGAGCCATGCATATCAGATGAT
41760900 TTGGCTTCGAGCCATGCATATCAGATGAT
1 TTGGCTTCGAGCCATGCATATCAGATGAT
*
41760929 TTGGCTTCGGGCCATG
1 TTGGCTTCGAGCCATG
41760945 ATAATTATTC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.19, C:0.22, G:0.28, T:0.31
Consensus pattern (29 bp):
TTGGCTTCGAGCCATGCATATCAGATGAT
Found at i:41767974 original size:8 final size:8
Alignment explanation
Indices: 41767961--41767995 Score: 61
Period size: 8 Copynumber: 4.4 Consensus size: 8
41767951 GTGAATTGGA
*
41767961 AAAAGCTG
1 AAAAGCCG
41767969 AAAAGCCG
1 AAAAGCCG
41767977 AAAAGCCG
1 AAAAGCCG
41767985 AAAAGCCG
1 AAAAGCCG
41767993 AAA
1 AAA
41767996 CTTCGTCATT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
8 26 1.00
ACGTcount: A:0.54, C:0.20, G:0.23, T:0.03
Consensus pattern (8 bp):
AAAAGCCG
Found at i:41768394 original size:27 final size:27
Alignment explanation
Indices: 41768337--41768542 Score: 172
Period size: 27 Copynumber: 7.7 Consensus size: 27
41768327 AAAATTAATT
* *
41768337 AAATTACTTAAATACCCT-AATTTGTA
1 AAATTACTAAAATACCCTCGATTTGTA
*
41768363 AAATTA-TCAAAATACCCCCGATTTGTA
1 AAATTACT-AAAATACCCTCGATTTGTA
*
41768390 AAATTACTGAAATACCCTCGATTTGTA
1 AAATTACTAAAATACCCTCGATTTGTA
* * *
41768417 AAATTACCAAAATACCCTCAATTTGGA
1 AAATTACTAAAATACCCTCGATTTGTA
* *
41768444 AAATTACTAAAATACCCTTG-TAGTGTA
1 AAATTACTAAAATACCCTCGAT-TTGTA
** * *
41768471 AAATTACCGAAATACCCTTG-TAGTGTA
1 AAATTACTAAAATACCCTCGAT-TTGTA
* * * *
41768498 AAATTACCAAAATATCCT-TATAGTGTA
1 AAATTACTAAAATACCCTCGAT-TTGTA
41768525 AAATTA-TAGAAATACCCT
1 AAATTACTA-AAATACCCT
41768543 TCTAGTGTAA
Statistics
Matches: 153, Mismatches: 21, Indels: 11
0.83 0.11 0.06
Matches are distributed among these distances:
25 1 0.01
26 16 0.10
27 135 0.88
28 1 0.01
ACGTcount: A:0.42, C:0.18, G:0.09, T:0.32
Consensus pattern (27 bp):
AAATTACTAAAATACCCTCGATTTGTA
Found at i:41768471 original size:81 final size:79
Alignment explanation
Indices: 41768337--41768568 Score: 252
Period size: 81 Copynumber: 2.9 Consensus size: 79
41768327 AAAATTAATT
** ** * *
41768337 AAATTACTTAAATACCCTAATTTGTAAAATTATCAAAATACCCCCG-ATTTGTAAAATTACTGAA
1 AAATTACCAAAATACCCTAATTTGTAAAATTAT-AAAATACCCTTGTA-GTGTAAAATTACCGAA
*
41768401 ATACCCTCG-ATTTGTA
64 ATACCCTCGTA-GTGTA
*
41768417 AAATTACCAAAATACCCTCAATTTGGAAAATTACTAAAATACCCTTGTAGTGTAAAATTACCGAA
1 AAATTACCAAAATACCCT-AATTTGTAAAATTA-TAAAATACCCTTGTAGTGTAAAATTACCGAA
*
41768482 ATACCCTTGTAGTGTA
64 ATACCCTCGTAGTGTA
* * * * * *
41768498 AAATTACCAAAATATCCTTATAGTGTAAAATTATAGAAATACCCTTCTAGTGTAAAACTACGGAA
1 AAATTACCAAAATACCCTAAT-TTGTAAAATTATA-AAATACCCTTGTAGTGTAAAATTACCGAA
41768563 ATACCC
64 ATACCC
41768569 CTGTAGGGCA
Statistics
Matches: 130, Mismatches: 16, Indels: 11
0.83 0.10 0.07
Matches are distributed among these distances:
80 20 0.15
81 107 0.82
82 3 0.02
ACGTcount: A:0.41, C:0.19, G:0.09, T:0.31
Consensus pattern (79 bp):
AAATTACCAAAATACCCTAATTTGTAAAATTATAAAATACCCTTGTAGTGTAAAATTACCGAAAT
ACCCTCGTAGTGTA
Found at i:41768488 original size:54 final size:54
Alignment explanation
Indices: 41768337--41768530 Score: 196
Period size: 54 Copynumber: 3.6 Consensus size: 54
41768327 AAAATTAATT
* * * * * *
41768337 AAATTACTTAAATACCCTAAT-TTGTAAAATTATCAAAATACCCCCGATTTGTA
1 AAATTACTAAAATACCCTTATAGTGTAAAATTACCAAAATACCCTCAATTTGTA
* * * *
41768390 AAATTACTGAAATACCCTCGAT-TTGTAAAATTACCAAAATACCCTCAATTTGGA
1 AAATTACTAAAATACCCT-TATAGTGTAAAATTACCAAAATACCCTCAATTTGTA
* * ** *
41768444 AAATTACTAAAATACCCTTGTAGTGTAAAATTACCGAAATACCCT-TGTAGTGTA
1 AAATTACTAAAATACCCTTATAGTGTAAAATTACCAAAATACCCTCAAT-TTGTA
* *
41768498 AAATTACCAAAATATCCTTATAGTGTAAAATTA
1 AAATTACTAAAATACCCTTATAGTGTAAAATTA
41768531 TAGAAATACC
Statistics
Matches: 120, Mismatches: 18, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
53 19 0.16
54 101 0.84
ACGTcount: A:0.42, C:0.18, G:0.09, T:0.32
Consensus pattern (54 bp):
AAATTACTAAAATACCCTTATAGTGTAAAATTACCAAAATACCCTCAATTTGTA
Found at i:41768543 original size:27 final size:27
Alignment explanation
Indices: 41768386--41768574 Score: 163
Period size: 27 Copynumber: 7.0 Consensus size: 27
41768376 ACCCCCGATT
* * *
41768386 TGTAAAATTACTGAAATACCCTCG-ATT
1 TGTAAAATTACAGAAATACCCTTGTA-G
** *
41768413 TGTAAAATTACCA-AAATACCC-TCAATT
1 TGTAAAATTA-CAGAAATACCCTTGTA-G
*
41768440 TGGAAAATTACTA-AAATACCCTTGTAG
1 TGTAAAATTAC-AGAAATACCCTTGTAG
*
41768467 TGTAAAATTACCGAAATACCCTTGTAG
1 TGTAAAATTACAGAAATACCCTTGTAG
* *
41768494 TGTAAAATTACCA-AAATATCCTTATAG
1 TGTAAAATTA-CAGAAATACCCTTGTAG
* *
41768521 TGTAAAATTATAGAAATACCCTTCTAG
1 TGTAAAATTACAGAAATACCCTTGTAG
* * *
41768548 TGTAAAACTACGGAAATACCCCTGTAG
1 TGTAAAATTACAGAAATACCCTTGTAG
41768575 GGCAAAATGA
Statistics
Matches: 135, Mismatches: 20, Indels: 14
0.80 0.12 0.08
Matches are distributed among these distances:
26 2 0.01
27 129 0.96
28 4 0.03
ACGTcount: A:0.40, C:0.18, G:0.12, T:0.30
Consensus pattern (27 bp):
TGTAAAATTACAGAAATACCCTTGTAG
Found at i:41768998 original size:27 final size:27
Alignment explanation
Indices: 41768968--41769056 Score: 90
Period size: 27 Copynumber: 3.3 Consensus size: 27
41768958 CTTTGGGCTA
*
41768968 ATCATATTTACCTATGGCTATGTGCCT
1 ATCATATTTACCTATGGCTATGTGCCG
* * *
41768995 ATCATATTTA-TTGATGACTATGTGTCG
1 ATCATATTTACCT-ATGGCTATGTGCCG
* * * *
41769022 ACCATATTTACCCATGGTTGTGTGCCG
1 ATCATATTTACCTATGGCTATGTGCCG
41769049 ATCATATT
1 ATCATATT
41769057 ACAGCTACTG
Statistics
Matches: 48, Mismatches: 12, Indels: 4
0.75 0.19 0.06
Matches are distributed among these distances:
26 1 0.02
27 47 0.98
ACGTcount: A:0.24, C:0.19, G:0.17, T:0.40
Consensus pattern (27 bp):
ATCATATTTACCTATGGCTATGTGCCG
Done.