Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr03 135709677
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 135709677
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 151 of 438
Found at i:45539855 original size:15 final size:15
Alignment explanation
Indices: 45539835--45539865 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
45539825 ATTTTTTTTA
45539835 TAATTTTAAAAATTT
1 TAATTTTAAAAATTT
*
45539850 TAATTTTTAAAATTT
1 TAATTTTAAAAATTT
45539865 T
1 T
45539866 TTTGAATTAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (15 bp):
TAATTTTAAAAATTT
Found at i:45543707 original size:22 final size:22
Alignment explanation
Indices: 45543677--45543726 Score: 73
Period size: 22 Copynumber: 2.3 Consensus size: 22
45543667 TAAGGAGACC
* *
45543677 AAAACAGATTAGTAAATCAACG
1 AAAATAGATTAGAAAATCAACG
*
45543699 AAAATAGATTAGAAAATCAATG
1 AAAATAGATTAGAAAATCAACG
45543721 AAAATA
1 AAAATA
45543727 AGGAAAAAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.60, C:0.08, G:0.12, T:0.20
Consensus pattern (22 bp):
AAAATAGATTAGAAAATCAACG
Found at i:45551249 original size:18 final size:18
Alignment explanation
Indices: 45551226--45551268 Score: 77
Period size: 18 Copynumber: 2.4 Consensus size: 18
45551216 TTCTTAATTG
45551226 AATTATCGAACATGTTAA
1 AATTATCGAACATGTTAA
45551244 AATTATCGAACATGTTAA
1 AATTATCGAACATGTTAA
*
45551262 AAATATC
1 AATTATC
45551269 AAACCATTGA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.47, C:0.12, G:0.09, T:0.33
Consensus pattern (18 bp):
AATTATCGAACATGTTAA
Found at i:45554120 original size:2 final size:2
Alignment explanation
Indices: 45554113--45554145 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
45554103 AATTAAAAAC
45554113 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
45554146 AAAAGTTCAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:45554662 original size:4 final size:4
Alignment explanation
Indices: 45554655--45554684 Score: 60
Period size: 4 Copynumber: 7.5 Consensus size: 4
45554645 AATGAAAAGC
45554655 TATG TATG TATG TATG TATG TATG TATG TA
1 TATG TATG TATG TATG TATG TATG TATG TA
45554685 GGTAGGTAGG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 26 1.00
ACGTcount: A:0.27, C:0.00, G:0.23, T:0.50
Consensus pattern (4 bp):
TATG
Found at i:45554689 original size:4 final size:4
Alignment explanation
Indices: 45554682--45554708 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
45554672 ATGTATGTAT
45554682 GTAG GTAG GTAG GTAG GTAG GTAG GTA
1 GTAG GTAG GTAG GTAG GTAG GTAG GTA
45554709 TGCATAAACT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.26, C:0.00, G:0.48, T:0.26
Consensus pattern (4 bp):
GTAG
Found at i:45555914 original size:25 final size:24
Alignment explanation
Indices: 45555886--45555939 Score: 63
Period size: 25 Copynumber: 2.2 Consensus size: 24
45555876 TAATAAATAA
*
45555886 AAATACCCATATTAATGGTATCATT
1 AAATACCCATATTAATGG-ATCATC
***
45555911 AAATGGTCATATTAATGGATCATC
1 AAATACCCATATTAATGGATCATC
45555935 AAATA
1 AAATA
45555940 ACTAGAAGCT
Statistics
Matches: 24, Mismatches: 5, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
24 9 0.38
25 15 0.62
ACGTcount: A:0.43, C:0.13, G:0.11, T:0.33
Consensus pattern (24 bp):
AAATACCCATATTAATGGATCATC
Found at i:45566487 original size:40 final size:40
Alignment explanation
Indices: 45566382--45566527 Score: 152
Period size: 40 Copynumber: 3.6 Consensus size: 40
45566372 GCGTCTTGCT
* * * ** *
45566382 CAAAAGCCTTCGGGACATAGCCCGGTTATAATAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATGGTAACTCGCA
* * *
45566422 CGAATGCCTTCGGGACTTAACCCGGATTTGGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATGGTAACTCGCA
* * *
45566462 CAAATGCCTTC-GGACCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATGGTAAC-TCGCA
45566503 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
45566528 CATCATTCGA
Statistics
Matches: 87, Mismatches: 16, Indels: 6
0.80 0.15 0.06
Matches are distributed among these distances:
39 3 0.03
40 73 0.84
41 11 0.13
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.23
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATGGTAACTCGCA
Found at i:45569187 original size:29 final size:28
Alignment explanation
Indices: 45569155--45569257 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
45569145 GGGACGAGAT
* *
45569155 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTG-AATATA
* *
45569184 TGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTT-GAATATA
* * *
45569213 TGGCACTATGTGTGCGGGCTTGAATCACA
1 TGGCACTAAGTGTGCGAGCTTGAAT-ATA
45569242 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
45569258 TGATTGAGTA
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 3 0.05
29 58 0.94
30 1 0.02
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (28 bp):
TGGCACTAAGTGTGCGAGCTTGAATATA
Found at i:45575804 original size:40 final size:40
Alignment explanation
Indices: 45575745--45575886 Score: 124
Period size: 40 Copynumber: 3.5 Consensus size: 40
45575735 AAATTGAATG
* * *
45575745 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ***
45575785 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ** *
45575825 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTAGAAACT
*
45575865 CTATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
45575887 GCATTTGTGC
Statistics
Matches: 86, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
39 3 0.03
40 83 0.97
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:45575887 original size:40 final size:39
Alignment explanation
Indices: 45575784--45575896 Score: 145
Period size: 40 Copynumber: 2.8 Consensus size: 39
45575774 TGCTGGAAAT
* * **
45575784 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTCAC
*
45575824 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAT
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTCAC
*
45575864 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGC
45575897 ACATGTTATA
Statistics
Matches: 65, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
39 3 0.05
40 60 0.92
41 2 0.03
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTCAC
Found at i:45585841 original size:45 final size:45
Alignment explanation
Indices: 45585778--45585984 Score: 171
Period size: 45 Copynumber: 4.7 Consensus size: 45
45585768 TAGGATTTTG
* ** *
45585778 ATATGT-ATTTCCGAGTAAGACCACGTCTGGGACGTTGGCATCGAT
1 ATATGTGATTT-CGTGTAAGACCACGTCTGGGACACTAGCATCGAT
* * *
45585823 ATATGTGTTTTTGTGTAAGACCACGTCTGGGACACTAGCATTGAT
1 ATATGTGATTTCGTGTAAGACCACGTCTGGGACACTAGCATCGAT
* *
45585868 ATATGTGATTTCGTGTAAGACCATGTCTGGGACA-TCAACATCG-T
1 ATATGTGATTTCGTGTAAGACCACGTCTGGGACACT-AGCATCGAT
* * * *
45585912 AT-T-AGA-TTCGAGTAAGACC-CTGTCTGGGACAATGGCATCG--
1 ATATGTGATTTCGTGTAAGACCAC-GTCTGGGACACTAGCATCGAT
* ** *
45585952 ATATGAGATAGCATGTAAGACCACGTCTGGGAC
1 ATATGTGATTTCGTGTAAGACCACGTCTGGGAC
45585985 GTTGGCATTG
Statistics
Matches: 133, Mismatches: 21, Indels: 18
0.77 0.12 0.10
Matches are distributed among these distances:
40 2 0.02
41 28 0.21
42 6 0.05
43 19 0.14
44 5 0.04
45 70 0.53
46 3 0.02
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.29
Consensus pattern (45 bp):
ATATGTGATTTCGTGTAAGACCACGTCTGGGACACTAGCATCGAT
Found at i:45585951 original size:41 final size:42
Alignment explanation
Indices: 45585837--45585984 Score: 106
Period size: 41 Copynumber: 3.5 Consensus size: 42
45585827 GTGTTTTTGT
* * * * *
45585837 GTAAGACCACGTCTGGGACA-CTAGCATTGATATATGTGATTTCGT
1 GTAAGACCATGTCTGGGACATC-AACATCG--ATATGAGA-TTCGA
*
45585882 GTAAGACCATGTCTGGGACATCAACATCG-TATTAGATTCGA
1 GTAAGACCATGTCTGGGACATCAACATCGATATGAGATTCGA
* ** *
45585923 GTAAGACCCTGTCTGGGACAAT-GGCATCGATATGAGA-TAGCA
1 GTAAGACCATGTCTGGGAC-ATCAACATCGATATGAGATTCG-A
*
45585965 TGTAAGACCACGTCTGGGAC
1 -GTAAGACCATGTCTGGGAC
45585985 GTTGGCATTG
Statistics
Matches: 85, Mismatches: 13, Indels: 12
0.77 0.12 0.11
Matches are distributed among these distances:
41 29 0.34
42 14 0.16
43 17 0.20
45 24 0.28
46 1 0.01
ACGTcount: A:0.29, C:0.20, G:0.26, T:0.26
Consensus pattern (42 bp):
GTAAGACCATGTCTGGGACATCAACATCGATATGAGATTCGA
Found at i:45592638 original size:40 final size:40
Alignment explanation
Indices: 45592400--45592624 Score: 314
Period size: 40 Copynumber: 5.7 Consensus size: 40
45592390 TCGAATGATG
* * * *
45592400 TCCGGGCTAAGTCCCGAAGGC-TTT-TGCTAAGTGACTATA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
**
45592439 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
45592479 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
45592519 TCCGGGTTAAGTCCCGAAGGCATTTGTGCAAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
45592559 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
45592600 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTG
45592625 AACGAGTAGC
Statistics
Matches: 171, Mismatches: 10, Indels: 9
0.90 0.05 0.05
Matches are distributed among these distances:
39 19 0.11
40 147 0.86
41 5 0.03
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:45600556 original size:39 final size:39
Alignment explanation
Indices: 45600414--45600556 Score: 175
Period size: 40 Copynumber: 3.6 Consensus size: 39
45600404 CGAATGATGT
* * *
45600414 CCGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATAT
1 CCGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
45600453 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGG-CTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATAA
*
45600492 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CC-GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
45600533 CCGGCTATGTCCCGAAGGCATTTG
1 CCGGCTAAGTCCCGAAGGCATTTG
45600557 AACGAGTAGC
Statistics
Matches: 91, Mismatches: 6, Indels: 14
0.82 0.05 0.13
Matches are distributed among these distances:
39 26 0.29
40 53 0.58
41 12 0.13
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (39 bp):
CCGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:45600563 original size:79 final size:79
Alignment explanation
Indices: 45600413--45600579 Score: 198
Period size: 79 Copynumber: 2.1 Consensus size: 79
45600403 TCGAATGATG
* *
45600413 TCCGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATTTG
1 TCCGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATAACCGGACTAAGATCCGAAGGCATTTG
**
45600478 TGCGAGTTA-CTAAA
66 AACGAG-TAGCTAAA
* * *
45600492 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAACCGG-CTATG-TCCCGAAGGCAT
1 TCC-GGTTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATAACCGGACTAAGAT-CCGAAGGCAT
*
45600554 TTGAACGAGTAGCTATA
63 TTGAACGAGTAGCTAAA
45600571 TCCGGTTAA
1 TCCGGTTAA
45600580 ACTCCGAAGG
Statistics
Matches: 76, Mismatches: 8, Indels: 9
0.82 0.09 0.10
Matches are distributed among these distances:
78 9 0.12
79 31 0.41
80 29 0.38
81 7 0.09
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.27
Consensus pattern (79 bp):
TCCGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATAACCGGACTAAGATCCGAAGGCATTTG
AACGAGTAGCTAAA
Found at i:45614148 original size:37 final size:36
Alignment explanation
Indices: 45614099--45614184 Score: 138
Period size: 37 Copynumber: 2.3 Consensus size: 36
45614089 TACGAAGTCT
45614099 TACCC-GACATAATCTCCACACGTAGTCATCGGGTC
1 TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
45614134 GTACCCGGACATAATCTCCACACGTAGTCATCGGGTC
1 -TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
45614171 TCACCCGGAACATA
1 T-ACCCGG-ACATA
45614185 TTTCCAAGTT
Statistics
Matches: 47, Mismatches: 0, Indels: 4
0.92 0.00 0.08
Matches are distributed among these distances:
36 6 0.13
37 36 0.77
38 5 0.11
ACGTcount: A:0.27, C:0.34, G:0.19, T:0.21
Consensus pattern (36 bp):
TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
Found at i:45614323 original size:49 final size:49
Alignment explanation
Indices: 45614253--45614465 Score: 347
Period size: 49 Copynumber: 4.4 Consensus size: 49
45614243 TTTACCACAT
*
45614253 ATATATATACAGTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
* *
45614302 ATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATCAC
1 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
*
45614351 ATATATATATACTTTCACATTCATCA-ATCGGCCATTAGGCCTTATCAC
1 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
* * *
45614399 ATATACATACATTTTCACATTCATCACATCGGCCATTAGGCCTCATCAC
1 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
*
45614448 ATATATATACATTTTCAC
1 ATATATATACACTTTCAC
45614466 GAATCTTGAT
Statistics
Matches: 152, Mismatches: 11, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
48 45 0.30
49 107 0.70
ACGTcount: A:0.31, C:0.28, G:0.08, T:0.33
Consensus pattern (49 bp):
ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
Found at i:45614394 original size:97 final size:98
Alignment explanation
Indices: 45614233--45614465 Score: 369
Period size: 97 Copynumber: 2.4 Consensus size: 98
45614223 ATTCACATTA
* * *
45614233 GCCATTCGGCTTTACCACATATATATATACAGTTTCACATTCATCACATCGGCCATTAGGCCTTA
1 GCCATTAGGCCTTATCACATATATATATAC--TTTCACATTCATCACATCGGCCATTAGGCCTTA
45614298 TCACATATACATACACTTTCACATTCACCACATCG
64 TCACATATACATACACTTTCACATTCACCACATCG
45614333 GCCATTAGGCCTTATCACATATATATATACTTTCACATTCATCA-ATCGGCCATTAGGCCTTATC
1 GCCATTAGGCCTTATCACATATATATATACTTTCACATTCATCACATCGGCCATTAGGCCTTATC
* *
45614397 ACATATACATACATTTTCACATTCATCACATCG
66 ACATATACATACACTTTCACATTCACCACATCG
* * *
45614430 GCCATTAGGCCTCATCACATATATATACATTTTCAC
1 GCCATTAGGCCTTATCACATATATATATACTTTCAC
45614466 GAATCTTGAT
Statistics
Matches: 125, Mismatches: 8, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
97 84 0.67
98 14 0.11
100 27 0.22
ACGTcount: A:0.30, C:0.28, G:0.09, T:0.33
Consensus pattern (98 bp):
GCCATTAGGCCTTATCACATATATATATACTTTCACATTCATCACATCGGCCATTAGGCCTTATC
ACATATACATACACTTTCACATTCACCACATCG
Found at i:45618342 original size:40 final size:39
Alignment explanation
Indices: 45618298--45618376 Score: 131
Period size: 40 Copynumber: 2.0 Consensus size: 39
45618288 AGCTCAGATG
* *
45618298 CATCACTAGCACGAATGCTCTTTGGAACTTAGTCCGGATA
1 CATCACTAGCACGAATGCTCTTCGAAACTTAG-CCGGATA
45618338 CATCACTAGCACGAATGCTCTTCGAAACTTAGCCGGATA
1 CATCACTAGCACGAATGCTCTTCGAAACTTAGCCGGATA
45618377 TAACCACAAG
Statistics
Matches: 37, Mismatches: 2, Indels: 1
0.93 0.05 0.03
Matches are distributed among these distances:
39 7 0.19
40 30 0.81
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.25
Consensus pattern (39 bp):
CATCACTAGCACGAATGCTCTTCGAAACTTAGCCGGATA
Found at i:45618400 original size:39 final size:40
Alignment explanation
Indices: 45618305--45618389 Score: 109
Period size: 40 Copynumber: 2.1 Consensus size: 40
45618295 ATGCATCACT
* * * * *
45618305 AGCACGAATGCTCTTTGGAACTTAGTCCGGATACATCACT
1 AGCACGAATGCTCTTCGAAACTTAGTCCGGATAAACCACA
45618345 AGCACGAATGCTCTTCGAAACTTAG-CCGGATATAACCACA
1 AGCACGAATGCTCTTCGAAACTTAGTCCGGATA-AACCACA
45618385 AGCAC
1 AGCAC
45618390 AATTGCCTTC
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
39 7 0.18
40 32 0.82
ACGTcount: A:0.32, C:0.27, G:0.19, T:0.22
Consensus pattern (40 bp):
AGCACGAATGCTCTTCGAAACTTAGTCCGGATAAACCACA
Found at i:45618419 original size:40 final size:40
Alignment explanation
Indices: 45618365--45618493 Score: 145
Period size: 40 Copynumber: 3.2 Consensus size: 40
45618355 CTCTTCGAAA
*
45618365 CTTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGT
1 CTTAGCCCGGATATAACCACAAGCACAAATGCCTTCGGGT
* * * *
45618404 CTTAACCCGGGTATAACAACTCA-CACAAATGCCTTCGGGT
1 CTTAGCCCGGATATAACCAC-AAGCACAAATGCCTTCGGGT
** * * *
45618444 CTTAGCCCGGATATATTCACTAGCATAAATGCCTTCGGGA
1 CTTAGCCCGGATATAACCACAAGCACAAATGCCTTCGGGT
45618484 CTTAGCCCGG
1 CTTAGCCCGG
45618494 GTATCATTCA
Statistics
Matches: 74, Mismatches: 13, Indels: 5
0.80 0.14 0.05
Matches are distributed among these distances:
39 5 0.07
40 68 0.92
41 1 0.01
ACGTcount: A:0.27, C:0.29, G:0.20, T:0.24
Consensus pattern (40 bp):
CTTAGCCCGGATATAACCACAAGCACAAATGCCTTCGGGT
Found at i:45620404 original size:37 final size:36
Alignment explanation
Indices: 45620355--45620440 Score: 138
Period size: 37 Copynumber: 2.3 Consensus size: 36
45620345 TACGAAGTCT
45620355 TACCC-GACATAATCTCCACACGTAGTCATCGGGTC
1 TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
45620390 GTACCCGGACATAATCTCCACACGTAGTCATCGGGTC
1 -TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
45620427 TCACCCGGAACATA
1 T-ACCCGG-ACATA
45620441 TTTCCAAGTT
Statistics
Matches: 47, Mismatches: 0, Indels: 4
0.92 0.00 0.08
Matches are distributed among these distances:
36 6 0.13
37 36 0.77
38 5 0.11
ACGTcount: A:0.27, C:0.34, G:0.19, T:0.21
Consensus pattern (36 bp):
TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
Found at i:45620586 original size:49 final size:49
Alignment explanation
Indices: 45620509--45620722 Score: 356
Period size: 49 Copynumber: 4.4 Consensus size: 49
45620499 TTTACCACAT
*
45620509 ATATATATATACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
* *
45620558 ATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATCAC
1 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
*
45620607 ATATATATATACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
* * *
45620656 ATATACATACATTTTCACATTCATCACATCGGCCATTAGGCCTCATCAC
1 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
*
45620705 ATATATATACATTTTCAC
1 ATATATATACACTTTCAC
45620723 GAATCTTGAT
Statistics
Matches: 154, Mismatches: 11, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
49 154 1.00
ACGTcount: A:0.31, C:0.28, G:0.07, T:0.33
Consensus pattern (49 bp):
ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
Found at i:45629575 original size:17 final size:18
Alignment explanation
Indices: 45629533--45629581 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
45629523 AGTTGAAAAG
45629533 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
45629552 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
45629569 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
45629582 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:45630469 original size:40 final size:40
Alignment explanation
Indices: 45630403--45630569 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
45630393 AAATTGAATG
* * *
45630403 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * **
45630442 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
45630482 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
45630522 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
45630562 ATATCCGG
1 ATATCCGG
45630570 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:45633029 original size:6 final size:6
Alignment explanation
Indices: 45633011--45633107 Score: 74
Period size: 6 Copynumber: 15.8 Consensus size: 6
45633001 AAGAAATATT
* * *
45633011 ATCAGA A-CTAGA ATCAGA ATCAGA ATCAAA ATTAG- GTGACAGA ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA
* * *
45633060 ATCAGA ATCAGT ATCAGGTA A-CAGA ATCAAA ATCAGA ATCAGT ATCAG
1 ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA ATCAGA ATCAG
45633108 GTAACAGAAT
Statistics
Matches: 72, Mismatches: 11, Indels: 16
0.73 0.11 0.16
Matches are distributed among these distances:
5 4 0.06
6 60 0.83
7 6 0.08
8 2 0.03
ACGTcount: A:0.47, C:0.15, G:0.18, T:0.20
Consensus pattern (6 bp):
ATCAGA
Found at i:45633056 original size:31 final size:31
Alignment explanation
Indices: 45633020--45633117 Score: 133
Period size: 31 Copynumber: 3.2 Consensus size: 31
45633010 TATCAGAACT
* *
45633020 AGAATCAGAATCAGAATCAAAATTAGGTGAC
1 AGAATCAGAATCAGAATCAAAATCAGGTAAC
**
45633051 AGAATCAGAATCAGAATCAGTATCAGGTAAC
1 AGAATCAGAATCAGAATCAAAATCAGGTAAC
* **
45633082 AGAATCAAAATCAGAATCAGTATCAGGTAAC
1 AGAATCAGAATCAGAATCAAAATCAGGTAAC
45633113 AGAAT
1 AGAAT
45633118 AAAAAATCAG
Statistics
Matches: 62, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 62 1.00
ACGTcount: A:0.48, C:0.14, G:0.18, T:0.19
Consensus pattern (31 bp):
AGAATCAGAATCAGAATCAAAATCAGGTAAC
Found at i:45633186 original size:24 final size:23
Alignment explanation
Indices: 45633152--45633199 Score: 62
Period size: 22 Copynumber: 2.0 Consensus size: 23
45633142 CCCAACCCAA
45633152 TCCAGCCTATAACCAACCGCTACAC
1 TCCAGCCTAT-ACCAACC-CTACAC
*
45633177 TCCA-CCTATACCAGCCCTACAC
1 TCCAGCCTATACCAACCCTACAC
45633199 T
1 T
45633200 TCATGTGGGG
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
22 7 0.32
23 6 0.27
24 5 0.23
25 4 0.18
ACGTcount: A:0.29, C:0.46, G:0.06, T:0.19
Consensus pattern (23 bp):
TCCAGCCTATACCAACCCTACAC
Found at i:45633887 original size:27 final size:27
Alignment explanation
Indices: 45633538--45633894 Score: 486
Period size: 27 Copynumber: 13.3 Consensus size: 27
45633528 GGGGCAAAAT
* * * *
45633538 GGTAATTTTACCCCACA-AGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
45633564 GGTAATTCCACCCTACAGGGGTATGTT-
1 GGTAATTCTACCCTACAGGGGTAT-TTC
* *
45633591 AGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
45633618 GATAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
45633645 GGTAATTTTACCCTACAGGGGTATTCC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
45633672 GGTAATTCTACCCTACAGGGGCATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
45633699 GGTAATTCTACCCTACAGGGGTATTGC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
45633726 GATAAGTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
45633753 GGTAATTCTACCCTATAGGGGTA-TTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
45633779 TGGTAATTCTACCCTACAGGGGTATTCC
1 -GGTAATTCTACCCTACAGGGGTATTTC
*
45633807 GGTAATTCTACCTTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
45633834 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
45633861 AGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
45633888 GATAATT
1 GGTAATT
45633895 TCACAAATCA
Statistics
Matches: 292, Mismatches: 34, Indels: 9
0.87 0.10 0.03
Matches are distributed among these distances:
26 19 0.07
27 270 0.92
28 3 0.01
ACGTcount: A:0.25, C:0.22, G:0.20, T:0.32
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:45633939 original size:27 final size:27
Alignment explanation
Indices: 45633879--45634004 Score: 92
Period size: 27 Copynumber: 4.7 Consensus size: 27
45633869 TACCCTACAA
* * * * *
45633879 GGGTATTTCGATAATTTCACAAATCAC
1 GGGTATTTTGGTAATTTTACAAACCAG
*
45633906 GGCTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
*** *
45633933 GGGTATTTTGGTAATTTTATTGATC-G
1 GGGTATTTTGGTAATTTTACAAACCAG
* ** *
45633959 ATGGTATTTTGGTAATTTTGTAAACCAA
1 -GGGTATTTTGGTAATTTTACAAACCAG
**
45633987 GGGTATTTCAGTAATTTT
1 GGGTATTTTGGTAATTTT
45634005 GTAAATCGAG
Statistics
Matches: 77, Mismatches: 20, Indels: 4
0.76 0.20 0.04
Matches are distributed among these distances:
26 1 0.01
27 76 0.99
ACGTcount: A:0.28, C:0.10, G:0.20, T:0.42
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACCAG
Found at i:45633947 original size:81 final size:81
Alignment explanation
Indices: 45633592--45633948 Score: 297
Period size: 81 Copynumber: 4.4 Consensus size: 81
45633582 GGGTATGTTA
** * * * * * * *
45633592 GTAATTCTACCCTACAAGGGTATTTCGATAATTCTACCCTACAAGGGTATTTCGGTAATTTTACC
1 GTAATTCTACCAAACAGGGGTATTTTGGTAATTCTACCCTACAAGGGTATTCCGATAATTCTACA
* * * *
45633657 CTACAGGGGTATTCCG
66 ATACACGGCTATTTCG
** * * * * * *
45633673 GTAATTCTACCCTACAGGGGCATTTCGGTAATTCTACCCTACAGGGGTATTGCGATAAGTCTACC
1 GTAATTCTACCAAACAGGGGTATTTTGGTAATTCTACCCTACAAGGGTATTCCGATAATTCTACA
* * *
45633738 CTACAGGGGTATTTCG
66 ATACACGGCTATTTCG
** * * * * *
45633754 GTAATTCTACCCTATAGGGGTATTCTGGTAATTCTACCCTACAGGGGTATTCCGGTAATTCTACC
1 GTAATTCTACCAAACAGGGGTATTTTGGTAATTCTACCCTACAAGGGTATTCCGATAATTCTACA
* * *
45633819 TTACAGGGGTATTTCG
66 ATACACGGCTATTTCG
** ** *
45633835 GTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAAGGGTATTTCGATAATT-TCAC
1 GTAATTCTACCAAACAGGGGTATTTTGGTAATTCTACCCTACAAGGGTATTCCGATAATTCT-AC
*
45633899 AA-ATCACGGCTATTTTG
65 AATA-CACGGCTATTTCG
*
45633916 GTAATTTTA-CAAACCAGGGGTATTTTGGTAATT
1 GTAATTCTACCAAA-CAGGGGTATTTTGGTAATT
45633949 TTATTGATCG
Statistics
Matches: 239, Mismatches: 34, Indels: 6
0.86 0.12 0.02
Matches are distributed among these distances:
80 4 0.02
81 235 0.98
ACGTcount: A:0.25, C:0.21, G:0.20, T:0.34
Consensus pattern (81 bp):
GTAATTCTACCAAACAGGGGTATTTTGGTAATTCTACCCTACAAGGGTATTCCGATAATTCTACA
ATACACGGCTATTTCG
Found at i:45634005 original size:27 final size:27
Alignment explanation
Indices: 45633961--45634018 Score: 80
Period size: 27 Copynumber: 2.1 Consensus size: 27
45633951 ATTGATCGAT
**
45633961 GGTATTTTGGTAATTTTGTAAACCAAG
1 GGTATTTCAGTAATTTTGTAAACCAAG
* *
45633988 GGTATTTCAGTAATTTTGTAAATCGAG
1 GGTATTTCAGTAATTTTGTAAACCAAG
45634015 GGTA
1 GGTA
45634019 AAATGGTAAT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.29, C:0.07, G:0.24, T:0.40
Consensus pattern (27 bp):
GGTATTTCAGTAATTTTGTAAACCAAG
Found at i:45634013 original size:54 final size:54
Alignment explanation
Indices: 45633876--45634379 Score: 197
Period size: 54 Copynumber: 9.4 Consensus size: 54
45633866 TTCTACCCTA
* * * **
45633876 CAAGGGTATTTC-GATAATTTCACAAATC-ACGGCTATTTTGGTAATTTTACAAAC
1 CAAGGGTATTTCAG-TAATTTTATAAATCGA-GGGTATTTTGGTAATTTTGTAAAC
* ** ** *
45633930 CAGGGGTATTTTGGTAATTTTATTGATCGATGGTATTTTGGTAATTTTGTAAAC
1 CAAGGGTATTTCAGTAATTTTATAAATCGAGGGTATTTTGGTAATTTTGTAAAC
* *** * *
45633984 CAAGGGTATTTCAGTAATTTTGTAAATCGAGGGTAAAATGGTAATTCTGTAAAT
1 CAAGGGTATTTCAGTAATTTTATAAATCGAGGGTATTTTGGTAATTTTGTAAAC
* ** * * * **** * *
45634038 CAAAGGTAAAAT-GGTAATTCTGTAAATCGAGGGTAAGACGGTAATTCTGTAAAT
1 CAAGGGT-ATTTCAGTAATTTTATAAATCGAGGGTATTTTGGTAATTTTGTAAAC
* ** * * *** * * *
45634092 CGAGGGTAAAAAT-A-TAATTCTATAAATCGAAGGTAAAATGGTAATTCTATAAAT
1 CAAGGGT--ATTTCAGTAATTTTATAAATCGAGGGTATTTTGGTAATTTTGTAAAC
* *** * *** * *
45634146 CGAGGGTAAAAC-GATAATTCTATAAATCGAGGGTAAAATGGTAATTCTATCT-TA-
1 CAAGGGTATTTCAG-TAATTTTATAAATCGAGGGTATTTTGGTAATT-T-TGTAAAC
* * *
45634200 C-AGGAGTATTTCAGTAATTTTACAAATCGAGGGTATTTTAGTAATTTTGCAAAC
1 CAAGG-GTATTTCAGTAATTTTATAAATCGAGGGTATTTTGGTAATTTTGTAAAC
** * * * ** *
45634254 TGAGGGTATTTCGGTAATTTTACAAATTGAGGGTATTTCAGTAA-TTT-TACAAT
1 CAAGGGTATTTCAGTAATTTTATAAATCGAGGGTATTTTGGTAATTTTGTA-AAC
* * * * *
45634307 CGACGGTATTTCAGTAATTTTATAAACCGGGGGTACTTTGGTAA-TTT-TACAAC
1 CAAGGGTATTTCAGTAATTTTATAAATCGAGGGTATTTTGGTAATTTTGTA-AAC
***
45634360 TGGGGGTATTTCAGTAATTT
1 CAAGGGTATTTCAGTAATTT
45634380 GGTAATCTAA
Statistics
Matches: 361, Mismatches: 74, Indels: 31
0.77 0.16 0.07
Matches are distributed among these distances:
52 5 0.01
53 69 0.19
54 271 0.75
55 14 0.04
56 2 0.01
ACGTcount: A:0.34, C:0.10, G:0.21, T:0.36
Consensus pattern (54 bp):
CAAGGGTATTTCAGTAATTTTATAAATCGAGGGTATTTTGGTAATTTTGTAAAC
Found at i:45634027 original size:27 final size:27
Alignment explanation
Indices: 45633997--45634193 Score: 270
Period size: 27 Copynumber: 7.3 Consensus size: 27
45633987 GGGTATTTCA
*
45633997 GTAATTTTGTAAATCGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAATG
* *
45634024 GTAATTCTGTAAATCAAAGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAATG
* *
45634051 GTAATTCTGTAAATCGAGGGTAAGACG
1 GTAATTCTGTAAATCGAGGGTAAAATG
45634078 GTAATTCTGTAAATCGAGGGTAAAAAT-
1 GTAATTCTGTAAATCGAGGGT-AAAATG
* * *
45634105 ATAATTCTATAAATCGAAGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAATG
* *
45634132 GTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAATG
* *
45634159 ATAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAATG
45634186 GTAATTCT
1 GTAATTCT
45634194 ATCTTACAGG
Statistics
Matches: 150, Mismatches: 18, Indels: 4
0.87 0.10 0.02
Matches are distributed among these distances:
26 5 0.03
27 142 0.95
28 3 0.02
ACGTcount: A:0.41, C:0.08, G:0.21, T:0.30
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAATG
Found at i:45634053 original size:81 final size:80
Alignment explanation
Indices: 45633997--45634195 Score: 301
Period size: 81 Copynumber: 2.5 Consensus size: 80
45633987 GGGTATTTCA
* *
45633997 GTAATTTTGTAAATCGAGGGTAAAATGGTAATTCTGTAAATCAAAGGTAAAATGGTAATTCTGTA
1 GTAATTCTGTAAATCGAGGGTAAAATGGTAATTCTATAAATCAAAGGTAAAATGGTAATTCTGTA
*
45634062 AATCGAGGGTAAGAC
66 AATCGAGGGTAAAAC
* * *
45634077 GGTAATTCTGTAAATCGAGGGTAAAAAT-ATAATTCTATAAATCGAAGGTAAAATGGTAATTCTA
1 -GTAATTCTGTAAATCGAGGGT-AAAATGGTAATTCTATAAATCAAAGGTAAAATGGTAATTCTG
45634141 TAAATCGAGGGTAAAAC
64 TAAATCGAGGGTAAAAC
*
45634158 GATAATTCTATAAATCGAGGGTAAAATGGTAATTCTAT
1 G-TAATTCTGTAAATCGAGGGTAAAATGGTAATTCTAT
45634196 CTTACAGGAG
Statistics
Matches: 107, Mismatches: 8, Indels: 6
0.88 0.07 0.05
Matches are distributed among these distances:
80 6 0.06
81 96 0.90
82 5 0.05
ACGTcount: A:0.41, C:0.08, G:0.21, T:0.30
Consensus pattern (80 bp):
GTAATTCTGTAAATCGAGGGTAAAATGGTAATTCTATAAATCAAAGGTAAAATGGTAATTCTGTA
AATCGAGGGTAAAAC
Found at i:45634259 original size:81 final size:78
Alignment explanation
Indices: 45634174--45634327 Score: 177
Period size: 81 Copynumber: 1.9 Consensus size: 78
45634164 TCTATAAATC
*
45634174 GAGGGTAAAAT-GGTAATTCTATC-TTACAGGAGTATTTCAGTAATTTTACAAATCGAGGGTATT
1 GAGGGT-AAATCGGTAATTCTA-CATT-CAGG-GTATTTCAGTAATTTTAC-AATCGACGGTATT
*
45634237 TTAGTAATTTTGCAAACT
61 TCAGTAATTTTGCAAACT
** * *
45634255 GAGGGTATTTCGGTAATTTTACAAATTGAGGGTATTTCAGTAATTTTACAATCGACGGTATTTCA
1 GAGGGTAAATCGGTAATTCTAC--ATTCAGGGTATTTCAGTAATTTTACAATCGACGGTATTTCA
45634320 GTAATTTT
64 GTAATTTT
45634328 ATAAACCGGG
Statistics
Matches: 63, Mismatches: 6, Indels: 9
0.81 0.08 0.12
Matches are distributed among these distances:
80 25 0.40
81 33 0.52
82 3 0.05
83 2 0.03
ACGTcount: A:0.31, C:0.10, G:0.20, T:0.39
Consensus pattern (78 bp):
GAGGGTAAATCGGTAATTCTACATTCAGGGTATTTCAGTAATTTTACAATCGACGGTATTTCAGT
AATTTTGCAAACT
Found at i:45634321 original size:26 final size:27
Alignment explanation
Indices: 45634205--45634379 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
45634195 TCTTACAGGA
45634205 GTATTTCAGTAATTTTACAAATCGAGG
1 GTATTTCAGTAATTTTACAAATCGAGG
* *
45634232 GTATTTTAGTAATTTTGCAAA-CTGAGG
1 GTATTTCAGTAATTTTACAAATC-GAGG
* *
45634259 GTATTTCGGTAATTTTACAAATTGAGG
1 GTATTTCAGTAATTTTACAAATCGAGG
*
45634286 GTATTTCAGTAATTTTAC-AATCGACG
1 GTATTTCAGTAATTTTACAAATCGAGG
* * *
45634312 GTATTTCAGTAATTTTATAAACCGGGG
1 GTATTTCAGTAATTTTACAAATCGAGG
* * *
45634339 GTACTTT-GGTAATTTTACAACT-GGGG
1 GTA-TTTCAGTAATTTTACAAATCGAGG
45634365 GTATTTCAGTAATTT
1 GTATTTCAGTAATTT
45634380 GGTAATCTAA
Statistics
Matches: 125, Mismatches: 18, Indels: 11
0.81 0.12 0.07
Matches are distributed among these distances:
25 3 0.02
26 38 0.30
27 81 0.65
28 3 0.02
ACGTcount: A:0.29, C:0.10, G:0.21, T:0.40
Consensus pattern (27 bp):
GTATTTCAGTAATTTTACAAATCGAGG
Found at i:45634341 original size:53 final size:52
Alignment explanation
Indices: 45634205--45634379 Score: 217
Period size: 53 Copynumber: 3.3 Consensus size: 52
45634195 TCTTACAGGA
*
45634205 GTATTTCAGTAATTTTACAAATCGAGGGTATTTTAGTAATTTTGCAAACTGAGG
1 GTATTTCAGTAATTTTACAAATCGAGGGTA-TTTAGTAATTTTAC-AACTGAGG
* * *
45634259 GTATTTCGGTAATTTTACAAATTGAGGGTATTTCAGTAATTTTACAA-TCGACG
1 GTATTTCAGTAATTTTACAAATCGAGGGTATTT-AGTAATTTTACAACT-GAGG
* * * * *
45634312 GTATTTCAGTAATTTTATAAACCGGGGGTACTTTGGTAATTTTACAACTGGGG
1 GTATTTCAGTAATTTTACAAATCGAGGGTA-TTTAGTAATTTTACAACTGAGG
45634365 GTATTTCAGTAATTT
1 GTATTTCAGTAATTT
45634380 GGTAATCTAA
Statistics
Matches: 105, Mismatches: 12, Indels: 9
0.83 0.10 0.07
Matches are distributed among these distances:
52 1 0.01
53 62 0.59
54 42 0.40
ACGTcount: A:0.29, C:0.10, G:0.21, T:0.40
Consensus pattern (52 bp):
GTATTTCAGTAATTTTACAAATCGAGGGTATTTAGTAATTTTACAACTGAGG
Found at i:45646010 original size:40 final size:40
Alignment explanation
Indices: 45645940--45646162 Score: 263
Period size: 40 Copynumber: 5.6 Consensus size: 40
45645930 TATTCGGATG
45645940 ATATCCGGGCTAAGT-CCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* *
45645979 ATATCCGGGATAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-A--AGTTACT
* * *
45646022 ATACCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* * * * *
45646062 ATTTACGGGCTAAGACCCGAAGGCATGTGTGCGAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* * * *
45646102 ATATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTGCG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
45646142 ATATCC-GGCTAAAT-CCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
45646163 TACTTGGTTT
Statistics
Matches: 157, Mismatches: 23, Indels: 9
0.83 0.12 0.05
Matches are distributed among these distances:
38 7 0.04
39 20 0.13
40 93 0.59
41 1 0.01
43 36 0.23
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
Found at i:45646082 original size:83 final size:80
Alignment explanation
Indices: 45645944--45646133 Score: 256
Period size: 83 Copynumber: 2.4 Consensus size: 80
45645934 CGGATGATAT
* * * *
45645944 CCGGGCTAAGT-CCGAAGGCATTTGTGCAAGTTACTATATCCGGGATAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATACGGGATAAGACCCGAAGGCATGTG
*
45646008 TGCGAGTAGTTGCTATAC
66 TGC--G-AGTTACTATAC
* * *
45646026 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATTTACGGGCTAAGACCCGAAGGCATGTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATACGGGATAAGACCCGAAGGCATGTG
*
45646091 TGCGAGTTACTATAT
66 TGCGAGTTACTATAC
*
45646106 CCGGGTTAAGTCCCGAAGGCATTTGTGC
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC
45646134 GAGTTGCGAT
Statistics
Matches: 97, Mismatches: 10, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
80 36 0.37
81 1 0.01
82 11 0.11
83 49 0.51
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.26
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATACGGGATAAGACCCGAAGGCATGTG
TGCGAGTTACTATAC
Found at i:45653934 original size:40 final size:40
Alignment explanation
Indices: 45653793--45654014 Score: 231
Period size: 40 Copynumber: 5.6 Consensus size: 40
45653783 TATTCGGATG
* *
45653793 ATATCCGGGCTAAGT-CCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
*
45653832 ATATCC-GGATAAGTCCCGAAGGCATTTGTGCGAGTAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC---TAG-TGACT
*
45653874 ATACCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* * * * * *
45653914 ATTTACGGGCTAAGACCCGAAGGCATGTGTGCGAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* * *
45653954 ATATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTG-CG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
*
45653994 ATATCC-GGCTAAAT-CCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
45654015 TACTTGGTTT
Statistics
Matches: 154, Mismatches: 21, Indels: 17
0.80 0.11 0.09
Matches are distributed among these distances:
38 14 0.09
39 30 0.19
40 75 0.49
41 1 0.01
42 9 0.06
43 25 0.16
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:45653974 original size:80 final size:81
Alignment explanation
Indices: 45653793--45653985 Score: 257
Period size: 80 Copynumber: 2.4 Consensus size: 81
45653783 TATTCGGATG
* *
45653793 ATATCCGGGCTAAGT-CCGAAGGCATTTGTGCAAGTTACTATATCCGGATAAGTCCCGAAGGCAT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGATAAGACCCGAAGGCAT
* *
45653857 TTGTGCGAGTAGTTGCT
66 GTGTGC-AGTAGTTACT
* * * * *
45653874 ATACCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATTTACGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATAT-CCGGATAAGACCCGAAGGCA
45653939 TGTGTGC-G-AGTTACT
65 TGTGTGCAGTAGTTACT
*
45653954 ATATCCGGGTTAAGTCCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC
45653986 GAGTTGCGAT
Statistics
Matches: 99, Mismatches: 11, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
80 36 0.36
81 15 0.15
82 25 0.25
83 23 0.23
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (81 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGATAAGACCCGAAGGCAT
GTGTGCAGTAGTTACT
Found at i:45661722 original size:40 final size:40
Alignment explanation
Indices: 45661667--45661891 Score: 299
Period size: 40 Copynumber: 5.6 Consensus size: 40
45661657 TATTCGGATG
45661667 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* *
45661707 ATATCCGGGATAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-A--AGTTACT
* * *
45661750 ATACCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* * *
45661790 ATTTCCGGGCTAAGACCCGAAGGCATGTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* * * *
45661830 ATATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTGCG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
45661870 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
45661892 TACTTGGTTT
Statistics
Matches: 160, Mismatches: 22, Indels: 7
0.85 0.12 0.04
Matches are distributed among these distances:
39 14 0.09
40 109 0.68
41 1 0.01
43 36 0.22
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
Found at i:45661810 original size:83 final size:80
Alignment explanation
Indices: 45661671--45661861 Score: 274
Period size: 83 Copynumber: 2.4 Consensus size: 80
45661661 CGGATGATAT
* * *
45661671 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATATCCGGGATAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGATAAGACCCGAAGGCATGTG
*
45661736 TGCGAGTAGTTGCTATAC
66 TGC-A--AGTTACTATAC
* * *
45661754 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATTTCCGGGCTAAGACCCGAAGGCATGTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGATAAGACCCGAAGGCATGTG
*
45661819 TGCAAGTTACTATAT
66 TGCAAGTTACTATAC
*
45661834 CCGGGTTAAGTCCCGAAGGCATTTGTGC
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC
45661862 GAGTTGCGAT
Statistics
Matches: 99, Mismatches: 9, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
80 36 0.36
82 1 0.01
83 62 0.63
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGATAAGACCCGAAGGCATGTG
TGCAAGTTACTATAC
Found at i:45664260 original size:53 final size:53
Alignment explanation
Indices: 45664203--45664305 Score: 143
Period size: 53 Copynumber: 1.9 Consensus size: 53
45664193 AATCAGTCAC
* *
45664203 TTTACCTTATAGGGGTATTACAGTCATTTTACCCTATAGGGGTATTTCGGCAT
1 TTTACCCTATAGGGGTATTACAGTCATTTTACCCAATAGGGGTATTTCGGCAT
* *** *
45664256 TTTACCCTATGGGGGTATTTTGGTCATTTTACCCAATGGGGGTATTTCGG
1 TTTACCCTATAGGGGTATTACAGTCATTTTACCCAATAGGGGTATTTCGG
45664306 TTATCATTTC
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
53 43 1.00
ACGTcount: A:0.19, C:0.17, G:0.24, T:0.40
Consensus pattern (53 bp):
TTTACCCTATAGGGGTATTACAGTCATTTTACCCAATAGGGGTATTTCGGCAT
Found at i:45664302 original size:27 final size:27
Alignment explanation
Indices: 45664198--45664306 Score: 139
Period size: 27 Copynumber: 4.1 Consensus size: 27
45664188 GGGCAAATCA
* * * * *
45664198 GTCACTTTACCTTATAGGGGTATTACA
1 GTCATTTTACCCTATGGGGGTATTTCG
*
45664225 GTCATTTTACCCTATAGGGGTATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
*
45664252 G-CATTTTACCCTATGGGGGTATTTTG
1 GTCATTTTACCCTATGGGGGTATTTCG
*
45664278 GTCATTTTACCCAATGGGGGTATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
45664305 GT
1 GT
45664307 TATCATTTCA
Statistics
Matches: 73, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
26 24 0.33
27 49 0.67
ACGTcount: A:0.19, C:0.17, G:0.24, T:0.39
Consensus pattern (27 bp):
GTCATTTTACCCTATGGGGGTATTTCG
Found at i:45668957 original size:27 final size:27
Alignment explanation
Indices: 45668925--45668984 Score: 75
Period size: 27 Copynumber: 2.2 Consensus size: 27
45668915 CAAACAGTCA
* *
45668925 TTTACCTTACAAGGGTATTACATTCAT
1 TTTACCTTACAAGGGTATTACAGTAAT
* * *
45668952 TTTACCTTATAGGGGTATTTCAGTAAT
1 TTTACCTTACAAGGGTATTACAGTAAT
45668979 TTTACC
1 TTTACC
45668985 CTATAGGGTA
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.27, C:0.17, G:0.13, T:0.43
Consensus pattern (27 bp):
TTTACCTTACAAGGGTATTACAGTAAT
Found at i:45676179 original size:27 final size:27
Alignment explanation
Indices: 45676148--45676257 Score: 159
Period size: 27 Copynumber: 4.1 Consensus size: 27
45676138 CAAATTAGTT
* * *
45676148 ATTTTACCTTATAGGGGTATTACAGTC
1 ATTTTACCCTATGGGGGTATTTCAGTC
*
45676175 ATTTTACCCTATGGGGGTATTTCGGTC
1 ATTTTACCCTATGGGGGTATTTCAGTC
*
45676202 ATTTTACGCTATGGGGGTATTTC-GATC
1 ATTTTACCCTATGGGGGTATTTCAG-TC
45676229 ATTTTACCCTATGGGGGTATTTCAGTC
1 ATTTTACCCTATGGGGGTATTTCAGTC
45676256 AT
1 AT
45676258 AATTTCGGCC
Statistics
Matches: 75, Mismatches: 6, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
26 1 0.01
27 73 0.97
28 1 0.01
ACGTcount: A:0.20, C:0.16, G:0.23, T:0.41
Consensus pattern (27 bp):
ATTTTACCCTATGGGGGTATTTCAGTC
Found at i:45677461 original size:30 final size:28
Alignment explanation
Indices: 45677421--45677521 Score: 103
Period size: 28 Copynumber: 3.5 Consensus size: 28
45677411 GACAAGATTG
* * *
45677421 GCACTGAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--AATTATACA
* *
45677451 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTAATTATACA
* * *
45677479 GCACTAAGTGTGCGAGCTGAATATATATA
1 GCACTAAGTGTGCGAGTTTAAT-TATACA
45677508 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
45677522 GATTCACTAT
Statistics
Matches: 62, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
28 25 0.40
29 20 0.32
30 17 0.27
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTAATTATACA
Found at i:45677485 original size:28 final size:29
Alignment explanation
Indices: 45677450--45677521 Score: 112
Period size: 29 Copynumber: 2.5 Consensus size: 29
45677440 AAAATTGTAC
*
45677450 AGCACTAAGTGTGCGAGTTTG-AT-TATAT
1 AGCACTAAGTGTGCGAG-CTGAATATATAT
45677478 AGCACTAAGTGTGCGAGCTGAATATATAT
1 AGCACTAAGTGTGCGAGCTGAATATATAT
45677507 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
45677522 GATTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
27 2 0.05
28 19 0.46
29 20 0.49
ACGTcount: A:0.31, C:0.14, G:0.26, T:0.29
Consensus pattern (29 bp):
AGCACTAAGTGTGCGAGCTGAATATATAT
Found at i:45685448 original size:30 final size:28
Alignment explanation
Indices: 45685408--45685508 Score: 103
Period size: 28 Copynumber: 3.5 Consensus size: 28
45685398 GACAAGATTG
* * *
45685408 GCACTGAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--AATTATACA
* *
45685438 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTAATTATACA
* * *
45685466 GCACTAAGTGTGCGAGCTGAATATATATA
1 GCACTAAGTGTGCGAGTTTAAT-TATACA
45685495 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
45685509 GATTCACTAT
Statistics
Matches: 62, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
28 25 0.40
29 20 0.32
30 17 0.27
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTAATTATACA
Found at i:45685472 original size:28 final size:29
Alignment explanation
Indices: 45685437--45685508 Score: 112
Period size: 29 Copynumber: 2.5 Consensus size: 29
45685427 AAAATTGTAC
*
45685437 AGCACTAAGTGTGCGAGTTTG-AT-TATAT
1 AGCACTAAGTGTGCGAG-CTGAATATATAT
45685465 AGCACTAAGTGTGCGAGCTGAATATATAT
1 AGCACTAAGTGTGCGAGCTGAATATATAT
45685494 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
45685509 GATTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
27 2 0.05
28 19 0.46
29 20 0.49
ACGTcount: A:0.31, C:0.14, G:0.26, T:0.29
Consensus pattern (29 bp):
AGCACTAAGTGTGCGAGCTGAATATATAT
Found at i:45688910 original size:29 final size:29
Alignment explanation
Indices: 45688870--45688972 Score: 145
Period size: 29 Copynumber: 3.6 Consensus size: 29
45688860 GTTGAGAGAT
*
45688870 TGGCACTGAGTGTGCGAGTTTGAAATGCA
1 TGGCACTAAGTGTGCGAGTTTGAAATGCA
*
45688899 TGGCACTAAGTGTGCGAGCTTGAAATGCA
1 TGGCACTAAGTGTGCGAGTTTGAAATGCA
* **
45688928 TGGCACTATGTGTGCGAGTTT-AAAGTATA
1 TGGCACTAAGTGTGCGAGTTTGAAA-TGCA
45688957 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
45688973 CGGCTGATTA
Statistics
Matches: 66, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
28 3 0.05
29 63 0.95
ACGTcount: A:0.25, C:0.15, G:0.32, T:0.28
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTTGAAATGCA
Found at i:45691060 original size:40 final size:40
Alignment explanation
Indices: 45691005--45691173 Score: 164
Period size: 40 Copynumber: 4.2 Consensus size: 40
45690995 TGAATGATAC
* *
45691005 CCGGGCTAAGTCCCGAAGGAATTTATGCTAGTGATCATAT
1 CCGGGCTAAGACCCGAAGGAATTTGTGCTAGTGATCATAT
* * * *
45691045 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGAATTTGTGCTAG-TGATCATAT
* * * * *
45691085 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGAATTTGTGCTAGTGATCATAT
* * *
45691125 CCGGGTTAAGACCCGAAGGCAA-TTGTGCTTGTGGATTATAT
1 CCGGGCTAAGACCCGAAGG-AATTTGTGCTAGT-GATCATAT
45691166 CC-GGCTAA
1 CCGGGCTAA
45691174 ATTCCGAAGA
Statistics
Matches: 104, Mismatches: 21, Indels: 8
0.78 0.16 0.06
Matches are distributed among these distances:
39 1 0.01
40 94 0.90
41 9 0.09
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGAATTTGTGCTAGTGATCATAT
Found at i:45691172 original size:80 final size:80
Alignment explanation
Indices: 45691005--45691173 Score: 207
Period size: 80 Copynumber: 2.1 Consensus size: 80
45690995 TGAATGATAC
* * * *
45691005 CCGGGCTAAGTCCCGAAGGAATTTATGCTAGTGATCATATCCGGGCTAAGACCCGAAGGCATTCG
1 CCGGGCTAAGACCCGAAGGAATTTATGCAAGTGACCAAATCCGGGCTAAGACCCGAAGGCATTCG
*
45691070 TGCGAGTTGTTATAT
66 TGCGAGTGGTTATAT
* * * *
45691085 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAATCCGGGTTAAGACCCGAAGGCAATT-
1 CCGGGCTAAGACCCGAAGGAATTTATGCAAGTGACCAAATCCGGGCTAAGACCCGAAGGC-ATTC
**
45691149 GTGCTTGTGGATTATAT
65 GTGCGAGTGG-TTATAT
45691166 CC-GGCTAA
1 CCGGGCTAA
45691174 ATTCCGAAGA
Statistics
Matches: 76, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
80 65 0.86
81 11 0.14
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (80 bp):
CCGGGCTAAGACCCGAAGGAATTTATGCAAGTGACCAAATCCGGGCTAAGACCCGAAGGCATTCG
TGCGAGTGGTTATAT
Found at i:45702575 original size:29 final size:29
Alignment explanation
Indices: 45702535--45702637 Score: 154
Period size: 29 Copynumber: 3.6 Consensus size: 29
45702525 GTTGAGAGAT
*
45702535 TGGCACTGAGTGTGCGAGCTTGAAATGCA
1 TGGCACTAAGTGTGCGAGCTTGAAATGCA
45702564 TGGCACTAAGTGTGCGAGCTTGAAATGCA
1 TGGCACTAAGTGTGCGAGCTTGAAATGCA
* **
45702593 TGGCACTAAGTGTGCGAG-TTTAAAGTATA
1 TGGCACTAAGTGTGCGAGCTTGAAA-TGCA
45702622 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
45702638 CGGCTGATTA
Statistics
Matches: 69, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
28 5 0.07
29 64 0.93
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGAAATGCA
Found at i:45704715 original size:40 final size:40
Alignment explanation
Indices: 45704660--45704827 Score: 155
Period size: 40 Copynumber: 4.2 Consensus size: 40
45704650 TGAATGATAC
* *
45704660 CCGGGCTAAGTCCCGAAGGAATTTATGCTAGTGATCATAT
1 CCGGGCTAAGACCCGAAGGAATTTGTGCTAGTGATCATAT
* * * *
45704700 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGAATTTGTGCTAG-TGATCATAT
* * * * *
45704740 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGAATTTGTGCTAGTGATCATAT
* * *
45704780 CC-GGTTAAGACCCGAAGGCAA-TTGTGCTTGTGGATTATAT
1 CCGGGCTAAGACCCGAAGG-AATTTGTGCTAGT-GATCATAT
45704820 CC-GGCTAA
1 CCGGGCTAA
45704828 ATTCCGAAGA
Statistics
Matches: 103, Mismatches: 21, Indels: 8
0.78 0.16 0.06
Matches are distributed among these distances:
39 24 0.23
40 77 0.75
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGAATTTGTGCTAGTGATCATAT
Found at i:45704818 original size:80 final size:80
Alignment explanation
Indices: 45704660--45704827 Score: 198
Period size: 80 Copynumber: 2.1 Consensus size: 80
45704650 TGAATGATAC
* * * *
45704660 CCGGGCTAAGTCCCGAAGGAATTTATGCTAGTGATCATATCCGGGCTAAGACCCGAAGGCATTCG
1 CCGGGCTAAGACCCGAAGGAATTTATGCAAGTGACCAAATCCGGGCTAAGACCCGAAGGCATTCG
*
45704725 TGCGAGTTGTTATAT
66 TGCGAGTGGTTATAT
* * * *
45704740 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAATCC-GGTTAAGACCCGAAGGCAATT-
1 CCGGGCTAAGACCCGAAGGAATTTATGCAAGTGACCAAATCCGGGCTAAGACCCGAAGGC-ATTC
**
45704803 GTGCTTGTGGATTATAT
65 GTGCGAGTGG-TTATAT
45704820 CC-GGCTAA
1 CCGGGCTAA
45704828 ATTCCGAAGA
Statistics
Matches: 75, Mismatches: 11, Indels: 5
0.82 0.12 0.05
Matches are distributed among these distances:
79 29 0.39
80 46 0.61
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (80 bp):
CCGGGCTAAGACCCGAAGGAATTTATGCAAGTGACCAAATCCGGGCTAAGACCCGAAGGCATTCG
TGCGAGTGGTTATAT
Found at i:45716244 original size:39 final size:39
Alignment explanation
Indices: 45716190--45716352 Score: 254
Period size: 39 Copynumber: 4.2 Consensus size: 39
45716180 TGTGAATGAA
45716190 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
45716229 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
** *
45716268 TGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* * **
45716307 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCGTT
1 TGTGCGAATTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
45716347 TGTGCG
1 TGTGCG
45716353 GGTTACCATA
Statistics
Matches: 115, Mismatches: 8, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
39 99 0.86
40 16 0.14
ACGTcount: A:0.23, C:0.20, G:0.33, T:0.25
Consensus pattern (39 bp):
TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:45721155 original size:44 final size:43
Alignment explanation
Indices: 45721082--45721244 Score: 160
Period size: 43 Copynumber: 3.8 Consensus size: 43
45721072 CCGATATGTG
*
45721082 TTATCGTGTCAGACCACGTCTGGGATGTTGGCATCGACTTATGAT
1 TTATCGTGTAAGACCACGTCTGGGATGTTGGCATCGA-TT-TGAT
45721127 TTAT-GTGTAAGACCACGTCTGGGATGTTGGCATCGTATTTG-T
1 TTATCGTGTAAGACCACGTCTGGGATGTTGGCATCG-ATTTGAT
*
45721169 TT-TCGTGTAAGACC-CTGTCTGGGACAG-TGGCATCGATATTTGA-
1 TTATCGTGTAAGACCAC-GTCTGGGA-TGTTGGCATCG--ATTTGAT
* * * *
45721212 GTA-CATGTAAGACCACGTCTAGGACGTTGGCAT
1 TTATCGTGTAAGACCACGTCTGGGATGTTGGCAT
45721245 TGCACGAGCT
Statistics
Matches: 103, Mismatches: 6, Indels: 20
0.80 0.05 0.16
Matches are distributed among these distances:
41 2 0.02
42 30 0.29
43 33 0.32
44 33 0.32
45 5 0.05
ACGTcount: A:0.21, C:0.18, G:0.28, T:0.33
Consensus pattern (43 bp):
TTATCGTGTAAGACCACGTCTGGGATGTTGGCATCGATTTGAT
Found at i:45725397 original size:67 final size:67
Alignment explanation
Indices: 45725325--45725477 Score: 252
Period size: 67 Copynumber: 2.3 Consensus size: 67
45725315 GAGCACGGGT
* *
45725325 TAGACACACGGGTGTGTCTTATGGCTGTGTGGACAATTCAGTCTATATGCCTTATTTTGCCACTG
1 TAGACACACGGGTGTGTCTTATGGCTGTGTGGACAAGTCAGTCTATATGCCCTATTTTGCCACTG
*
45725390 TC
66 CC
*
45725392 TAGACACACGGGTGTGTCTTATGGCTGTGTGGACAAGTCAGTCTATCTGCCCTATTTTGCCACTG
1 TAGACACACGGGTGTGTCTTATGGCTGTGTGGACAAGTCAGTCTATATGCCCTATTTTGCCACTG
45725457 CC
66 CC
* *
45725459 TAGACATAGGGGTGTGTCT
1 TAGACACACGGGTGTGTCT
45725478 AATGCCGTGT
Statistics
Matches: 80, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
67 80 1.00
ACGTcount: A:0.19, C:0.22, G:0.26, T:0.33
Consensus pattern (67 bp):
TAGACACACGGGTGTGTCTTATGGCTGTGTGGACAAGTCAGTCTATATGCCCTATTTTGCCACTG
CC
Found at i:45727506 original size:50 final size:50
Alignment explanation
Indices: 45727387--45727728 Score: 305
Period size: 50 Copynumber: 6.8 Consensus size: 50
45727377 GTTGTGAGAA
* * * *
45727387 CACATGTGTAGTACTATGTGCAGGCTACTATGTGTTTAAGACA-ATT-TTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTG--T-A-CCAGATTGATAGGT
* * * *
45727439 CACGTGTGTAGTACTAAGTGCAGGCTACTACATATACCAGATTGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGT
* *
45727489 CGCATGTGTAGTACTAAGTGCAGGCTACTA-GATGTACCGGATTGATAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACG-TGTACCAGATTGATAGGT
* * * * * *
45727539 CACATGTGTAGTACTAAGTGCAGGCCACTATGTGTACCCG-TTAACTTCGAT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGA--TAGGT
* * * * * *
45727590 CACGTGTGTAGTATTAAGTACAGGCTACTACGTGTATCAGATGGATAAGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGT
* * * *
45727640 CACGTATGTAGTACTAAGTGCAGGCTACTATGTGTACCAAATTGATAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGT
** * * * *
45727690 TGCATGTGTAGTACTAACTGCAGGCGACTATGCGTACCA
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCA
45727729 AACAGCTTCG
Statistics
Matches: 238, Mismatches: 45, Indels: 16
0.80 0.15 0.05
Matches are distributed among these distances:
48 2 0.01
49 7 0.03
50 161 0.68
51 37 0.16
52 31 0.13
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.30
Consensus pattern (50 bp):
CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGT
Found at i:45727642 original size:101 final size:101
Alignment explanation
Indices: 45727493--45727677 Score: 273
Period size: 101 Copynumber: 1.8 Consensus size: 101
45727483 TTAGGTCGCA
* * * * *
45727493 TGTGTAGTACTAAGTGCAGGCTACTAGATGTACCGGATTGATAGGTCACATGTGTAGTACTAAGT
1 TGTGTAGTACTAAGTACAGGCTACTAGATGTACCAGATGGATAAGTCACATATGTAGTACTAAGT
45727558 GCAGGCCACTATGTGTACCCGTTAACTTCGATCACG
66 GCAGGCCACTATGTGTACCCGTTAACTTCGATCACG
* * *
45727594 TGTGTAGTATTAAGTACAGGCTACTACG-TGTATCAGATGGATAAGTCACGTATGTAGTACTAAG
1 TGTGTAGTACTAAGTACAGGCTACTA-GATGTACCAGATGGATAAGTCACATATGTAGTACTAAG
*
45727658 TGCAGGCTACTATGTGTACC
65 TGCAGGCCACTATGTGTACC
45727678 AAATTGATAG
Statistics
Matches: 74, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
101 73 0.99
102 1 0.01
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.30
Consensus pattern (101 bp):
TGTGTAGTACTAAGTACAGGCTACTAGATGTACCAGATGGATAAGTCACATATGTAGTACTAAGT
GCAGGCCACTATGTGTACCCGTTAACTTCGATCACG
Found at i:45727662 original size:151 final size:151
Alignment explanation
Indices: 45727438--45727727 Score: 402
Period size: 151 Copynumber: 1.9 Consensus size: 151
45727428 CAATTTTAGG
* * * * * *
45727438 TCACGTGTGTAGTACTAAGTGCAGGCTACTACATATACCAGATTGTTAGGTCGCATGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTACAGGCTACTACATATACCAGATGGATAAGTCACATATGTAGTAC
** *
45727503 TAAGTGCAGGCTACTA-GATGTACCGGATTGATAGGTCACATGTGTAGTACTAAGTGCAGGCCAC
66 TAAGTGCAGGCTACTATG-TGTACCAAATTGATAGGTCACATGTGTAGTACTAACTGCAGGCCAC
*
45727567 TATGTGTACCCGTTAACTTCGA
130 TATGCGTACCCGTTAACTTCGA
* * * * *
45727589 TCACGTGTGTAGTATTAAGTACAGGCTACTACGTGTATCAGATGGATAAGTCACGTATGTAGTAC
1 TCACGTGTGTAGTACTAAGTACAGGCTACTACATATACCAGATGGATAAGTCACATATGTAGTAC
** *
45727654 TAAGTGCAGGCTACTATGTGTACCAAATTGATAGGTTGCATGTGTAGTACTAACTGCAGGCGACT
66 TAAGTGCAGGCTACTATGTGTACCAAATTGATAGGTCACATGTGTAGTACTAACTGCAGGCCACT
45727719 ATGCGTACC
131 ATGCGTACC
45727728 AAACAGCTTC
Statistics
Matches: 120, Mismatches: 18, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
151 119 0.99
152 1 0.01
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.29
Consensus pattern (151 bp):
TCACGTGTGTAGTACTAAGTACAGGCTACTACATATACCAGATGGATAAGTCACATATGTAGTAC
TAAGTGCAGGCTACTATGTGTACCAAATTGATAGGTCACATGTGTAGTACTAACTGCAGGCCACT
ATGCGTACCCGTTAACTTCGA
Found at i:45728587 original size:180 final size:180
Alignment explanation
Indices: 45728285--45728622 Score: 514
Period size: 180 Copynumber: 1.9 Consensus size: 180
45728275 TCCGAGATCT
* *** *
45728285 GTACCATGAGATAAATAATTTTTAGTGAAGAAAGATTGGAACTATCAGATAGTGAAACAGGGGTA
1 GTACCATGAGATAAATAATTTTTACTGAAGAAAGAGCAGAACTATCAGACAGTGAAACAGGGGTA
* *
45728350 TATTTAATGAATAAAATATACTAATTGGATAAACTAAAAATTCTGAAAATTTTATGGTAATAATA
66 AATTTAATGAATAAAATATACTAATTGGATAAACCAAAAATTCTGAAAATTTTATGGTAATAATA
45728415 TATATGAGTATAGTTTCTAGGAAAATTAGTGGTTCTTAATTTGGAGTCCC
131 TATATGAGTATAGTTTCTAGGAAAATTAGTGGTTCTTAATTTGGAGTCCC
* * * ** *
45728465 GTACCATGAGATAAATAATTTTTACTGAAGAGAGGGCAGAACTGTTGGACAGTGAAATAGGGGTA
1 GTACCATGAGATAAATAATTTTTACTGAAGAAAGAGCAGAACTATCAGACAGTGAAACAGGGGTA
* *
45728530 AATTTAATGAATAAAATGTTCTAATTGGATAAACCAAAAATTCTGAAAATTTTATGGTAATAATA
66 AATTTAATGAATAAAATATACTAATTGGATAAACCAAAAATTCTGAAAATTTTATGGTAATAATA
* * *
45728595 TATGTGAGTCTAGTTTCTTGGAAAATTA
131 TATATGAGTATAGTTTCTAGGAAAATTA
45728623 ACGAACCTTA
Statistics
Matches: 140, Mismatches: 18, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
180 140 1.00
ACGTcount: A:0.40, C:0.07, G:0.19, T:0.33
Consensus pattern (180 bp):
GTACCATGAGATAAATAATTTTTACTGAAGAAAGAGCAGAACTATCAGACAGTGAAACAGGGGTA
AATTTAATGAATAAAATATACTAATTGGATAAACCAAAAATTCTGAAAATTTTATGGTAATAATA
TATATGAGTATAGTTTCTAGGAAAATTAGTGGTTCTTAATTTGGAGTCCC
Found at i:45735307 original size:50 final size:50
Alignment explanation
Indices: 45735234--45735582 Score: 351
Period size: 50 Copynumber: 6.9 Consensus size: 50
45735224 TAAGACAGTT
*
45735234 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATTG
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTG
* * * ** * *
45735284 TTAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCATACCCGATAG
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTG
* * *
45735334 TTTTGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATTG
1 -TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTG
* * * * * * * *
45735385 ATAGGTCGCATGTGTAGTACTAA-TTCTAGGCTACTATGCGTACCCG-TTAAC
1 TTAGGTCACGTGTGTAGTACTAAGTGC-AGGCTACTACGTGTACCAGATT--G
* * * * * *
45735436 TTTGATTACGTGTGTAGTACTAAGTGCAGGCTACTACCTGTATCAGATGG
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTG
* * *
45735486 ATAAGTCACGTGTGTAGTACTAAGTGCAGGCTATTACGTGTACCAGATTG
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTG
* * * * *
45735536 ATAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGA
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA
45735583 GAGCTTCGTT
Statistics
Matches: 237, Mismatches: 56, Indels: 12
0.78 0.18 0.04
Matches are distributed among these distances:
49 4 0.02
50 158 0.67
51 72 0.30
52 3 0.01
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (50 bp):
TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTG
Found at i:45735371 original size:101 final size:101
Alignment explanation
Indices: 45735190--45735571 Score: 426
Period size: 101 Copynumber: 3.8 Consensus size: 101
45735180 TGTGAGAACA
* * * **** * *
45735190 CATGTGTAGTACTATGTGCAGGCTACTTTGTGTTTAAGACAGTTTTAGGTCACGTGTGTAGTACT
1 CATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAGTTTT-GATCACGTGTGTAGTACT
*
45735255 AAGTGCAGGCTACTACATGTACCAGATTGTTAGGTCG
65 AAGTGCAGGCTACTACATGTACCAGATTGATAGGTCG
*
45735292 CATGTGTAGTACTAAGTGCAGGCTACTATGCATACCCGATAGTTTTGATCACGTGTGTAGTACTA
1 CATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAGTTTTGATCACGTGTGTAGTACTA
* *
45735357 AGTGCAGGCTACTACGTGTACCGGATTGATAGGTCG
66 AGTGCAGGCTACTACATGTACCAGATTGATAGGTCG
* * ** *
45735393 CATGTGTAGTACTAA-TTCTAGGCTACTATGCGTACCCGTTAACTTTGATTACGTGTGTAGTACT
1 CATGTGTAGTACTAAGTGC-AGGCTACTATGCGTACCCGATAGTTTTGATCACGTGTGTAGTACT
* * * * *
45735457 AAGTGCAGGCTACTACCTGTATCAGATGGATAAGTCA
65 AAGTGCAGGCTACTACATGTACCAGATTGATAGGTCG
* * * * * * * * * * *
45735494 CGTGTGTAGTACTAAGTGCAGGCTATTACGTGTACCAGATTG-ATAGGTCGCATGTGTAGTACTA
1 CATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAGTTTTGATCACGTGTGTAGTACTA
45735558 AGTGCAGGCTACTA
66 AGTGCAGGCTACTA
45735572 TGCGTACCAG
Statistics
Matches: 238, Mismatches: 40, Indels: 6
0.84 0.14 0.02
Matches are distributed among these distances:
100 32 0.13
101 167 0.70
102 39 0.16
ACGTcount: A:0.25, C:0.18, G:0.26, T:0.32
Consensus pattern (101 bp):
CATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAGTTTTGATCACGTGTGTAGTACTA
AGTGCAGGCTACTACATGTACCAGATTGATAGGTCG
Found at i:45736447 original size:180 final size:180
Alignment explanation
Indices: 45736145--45736498 Score: 514
Period size: 180 Copynumber: 2.0 Consensus size: 180
45736135 GAGATCTGTG
*
45736145 CCATGAGATAAATAATTTTAAGTGAAGAAAGATCAGAACTGTTAGACAGTGAAATAGGGGTATAT
1 CCATGAGATAAATAATTTTAAGTAAAGAAAGATCAGAACTGTTAGACAGTGAAATAGGGGTATAT
*
45736210 TTAATGAATAAACTATACTAATTTGCTAAACTAAAAATTCTGAAAATTGTATGGTAAGAATATAT
66 TTAATGAATAAACTATACTAATTTGCTAAACCAAAAATTCTGAAAATTGTATGGTAAGAATATAT
* * * * * * *
45736275 TTGAGTCTAGTTTGTGGGAAAATTAGCGGTTTTTAATTTGGAGTCCCATA
131 GTGAGTCTAGTTTCTGGAAAAATTAACAGATCTTAATTTGGAGTCCCATA
* * * **
45736325 CCATGAGATAAATAATTTTTAGTAAAGAGAGGTTGGAACTGTTAGACAGTGAAATAGGGGTA-AC
1 CCATGAGATAAATAATTTTAAGTAAAGAAAGATCAGAACTGTTAGACAGTGAAATAGGGGTATA-
* *
45736389 TTTAATGAATAAACTGTACTAA-TTGACTAAACCAAAAATTCTGAAAATTTTATGGTAAGAATAT
65 TTTAATGAATAAACTATACTAATTTG-CTAAACCAAAAATTCTGAAAATTGTATGGTAAGAATAT
* *
45736453 ATGTGAGTTTGGTTTCTGGAAAAATTAACAGATCTTAATTTGGAGT
129 ATGTGAGTCTAGTTTCTGGAAAAATTAACAGATCTTAATTTGGAGT
45736499 TTCGTAGCTC
Statistics
Matches: 154, Mismatches: 18, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
179 4 0.03
180 150 0.97
ACGTcount: A:0.39, C:0.08, G:0.20, T:0.33
Consensus pattern (180 bp):
CCATGAGATAAATAATTTTAAGTAAAGAAAGATCAGAACTGTTAGACAGTGAAATAGGGGTATAT
TTAATGAATAAACTATACTAATTTGCTAAACCAAAAATTCTGAAAATTGTATGGTAAGAATATAT
GTGAGTCTAGTTTCTGGAAAAATTAACAGATCTTAATTTGGAGTCCCATA
Found at i:45738524 original size:20 final size:18
Alignment explanation
Indices: 45738491--45738527 Score: 56
Period size: 20 Copynumber: 1.9 Consensus size: 18
45738481 TGTGATGTTT
45738491 ATATGTTTAATTTAATTA
1 ATATGTTTAATTTAATTA
45738509 ATATGGTTTAAATTTAATT
1 ATAT-GTTT-AATTTAATT
45738528 CGTGTTAGGT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 4 0.24
19 4 0.24
20 9 0.53
ACGTcount: A:0.38, C:0.00, G:0.08, T:0.54
Consensus pattern (18 bp):
ATATGTTTAATTTAATTA
Found at i:45740539 original size:16 final size:15
Alignment explanation
Indices: 45740512--45740545 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
45740502 ATAACTAGTA
*
45740512 TATAATTATATTTAT
1 TATAATTATATTAAT
45740527 TATAATATATATTAAT
1 TATAAT-TATATTAAT
45740543 TAT
1 TAT
45740546 TATCAAACTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (15 bp):
TATAATTATATTAAT
Found at i:45743041 original size:93 final size:93
Alignment explanation
Indices: 45742929--45743100 Score: 301
Period size: 93 Copynumber: 1.8 Consensus size: 93
45742919 GCCCATAAGT
*
45742929 GAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAGCTC-GGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCA
45742993 ACAAGTTCGGATGCCTAGTTACATCTCAC
65 ACAAGTTCGGATGCCTAGTTACATCTCAC
*
45743022 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
45743087 CGAGTTCGGATGCC
66 CAAGTTCGGATGCC
45743101 CAAATATCCC
Statistics
Matches: 75, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
92 2 0.03
93 73 0.97
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CAAGTTCGGATGCCTAGTTACATCTCAC
Found at i:45743094 original size:46 final size:46
Alignment explanation
Indices: 45742921--45743096 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
45742911 TGTAACCCGC
* *
45742921 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTC-GGACGCTCGCAT
* * *
45742967 CCATAAGTGAACTCGGACTCAACTCAACAAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
45743017 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
45743060 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
45743097 TGCCCAAATA
Statistics
Matches: 110, Mismatches: 12, Indels: 16
0.80 0.09 0.12
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 4 0.04
46 65 0.59
47 31 0.28
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:45743115 original size:46 final size:45
Alignment explanation
Indices: 45742972--45743115 Score: 139
Period size: 46 Copynumber: 3.1 Consensus size: 45
45742962 CGCATCCATA
* * *
45742972 AGTGAACTCGGACTCAACTCAACAAGTTCGGATGCCTAGTTACATCTC
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCA---ACATCCC
* * * * *
45743020 A-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTC-GCATCCATA
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAACATCC--C
*
45743065 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATATCCC
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCC-AACATCCC
45743111 AGTGA
1 AGTGA
45743116 TATGTCACTT
Statistics
Matches: 77, Mismatches: 14, Indels: 12
0.75 0.14 0.12
Matches are distributed among these distances:
43 4 0.05
45 1 0.01
46 37 0.48
47 30 0.39
48 5 0.06
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.21
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAACATCCC
Found at i:45745189 original size:51 final size:51
Alignment explanation
Indices: 45745105--45745227 Score: 142
Period size: 51 Copynumber: 2.4 Consensus size: 51
45745095 AGATGCCCGA
* *
45745105 TGGCCTGCACATAGTACCACCCTTGTAGTCAAAGCTACCTTCTT-CACAAAG
1 TGGCCTGCACATAGTACCACACTTGTAGCCAAAGCTACCTT-TTACACAAAG
* * *
45745156 TGGCCTTCACATAGTACCACACTTGT-GACCAAAGCTATCTTTTACACATAG
1 TGGCCTGCACATAGTACCACACTTGTAG-CCAAAGCTACCTTTTACACAAAG
* * *
45745207 TGCCCTGCACTTAATACCACA
1 TGGCCTGCACATAGTACCACA
45745228 GATGTGATCG
Statistics
Matches: 61, Mismatches: 9, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
50 3 0.05
51 58 0.95
ACGTcount: A:0.28, C:0.31, G:0.14, T:0.27
Consensus pattern (51 bp):
TGGCCTGCACATAGTACCACACTTGTAGCCAAAGCTACCTTTTACACAAAG
Found at i:45745234 original size:51 final size:51
Alignment explanation
Indices: 45745108--45745245 Score: 118
Period size: 51 Copynumber: 2.7 Consensus size: 51
45745098 TGCCCGATGG
* * * * * *
45745108 CCTGCACATAGTACCACCCTTGT-AGTCAAAGCTACCTTCTTCACAAAGTGG
1 CCTGCACATAATACCACACATGTGA-CCAAAGCTATCTTCTTCACAAAGTGC
* * * *
45745159 CCTTCACATAGTACCACACTTGTGACCAAAGCTATCTT-TTACACATAGTGC
1 CCTGCACATAATACCACACATGTGACCAAAGCTATCTTCTT-CACAAAGTGC
* * * *
45745210 CCTGCACTTAATACCACAGATGTGATCGAAGCTATC
1 CCTGCACATAATACCACACATGTGACCAAAGCTATC
45745246 GGGTACATAG
Statistics
Matches: 72, Mismatches: 13, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
50 2 0.03
51 69 0.96
52 1 0.01
ACGTcount: A:0.29, C:0.30, G:0.14, T:0.27
Consensus pattern (51 bp):
CCTGCACATAATACCACACATGTGACCAAAGCTATCTTCTTCACAAAGTGC
Found at i:45745278 original size:49 final size:49
Alignment explanation
Indices: 45745210--45745326 Score: 128
Period size: 49 Copynumber: 2.4 Consensus size: 49
45745200 CACATAGTGC
* * * * * *
45745210 CCTGCACTTAATACCACAGATGTGATCGAAGCTATCGGGTACA-TAGTAG
1 CCTGCACTTAGTACTACAGATGCGACCGAA-CCATCGGATACACTAGTAG
* * *
45745259 CTTGCACTTAGTACTACAGATGCGACCTAACCATCTGATACACGTAGTAG
1 CCTGCACTTAGTACTACAGATGCGACCGAACCATCGGATACAC-TAGTAG
45745309 CCTGCACTTAGTACTACA
1 CCTGCACTTAGTACTACA
45745327 CACATACCTA
Statistics
Matches: 56, Mismatches: 10, Indels: 3
0.81 0.14 0.04
Matches are distributed among these distances:
48 9 0.16
49 24 0.43
50 23 0.41
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.26
Consensus pattern (49 bp):
CCTGCACTTAGTACTACAGATGCGACCGAACCATCGGATACACTAGTAG
Found at i:45745366 original size:51 final size:49
Alignment explanation
Indices: 45745250--45745379 Score: 145
Period size: 51 Copynumber: 2.6 Consensus size: 49
45745240 GCTATCGGGT
* *
45745250 ACATAGTAGCTTGCACTTAGTACTACAGATGCGACCTAACCATCTGATAC
1 ACATAGTAGCTTGCACTTAGTACTACACA-GCGACCTAACCATCTGAAAC
* * * * *
45745300 ACGTAGTAGCCTGCACTTAGTACTACACA-CATACCTAAAACCATTTTAAAC
1 ACATAGTAGCTTGCACTTAGTACTACACAGC-GACCT--AACCATCTGAAAC
*
45745351 ACATAGTAGCTTGCACGTAGTACTACACA
1 ACATAGTAGCTTGCACTTAGTACTACACA
45745380 TGTGTTCTCA
Statistics
Matches: 67, Mismatches: 10, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
48 1 0.01
49 4 0.06
50 26 0.39
51 36 0.54
ACGTcount: A:0.35, C:0.26, G:0.14, T:0.25
Consensus pattern (49 bp):
ACATAGTAGCTTGCACTTAGTACTACACAGCGACCTAACCATCTGAAAC
Found at i:45747207 original size:25 final size:26
Alignment explanation
Indices: 45747150--45747207 Score: 68
Period size: 25 Copynumber: 2.3 Consensus size: 26
45747140 ATTTTTCTCC
*
45747150 TAAA-TTTCAAATTTATTTAATTATT
1 TAAATTTTCAAATTTATTGAATTATT
*
45747175 TAAGTTTTC-AATTTATTGAATTA-T
1 TAAATTTTCAAATTTATTGAATTATT
45747199 TAATATTTT
1 TAA-ATTTT
45747208 ATACTAATTA
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
24 4 0.14
25 20 0.71
26 4 0.14
ACGTcount: A:0.36, C:0.03, G:0.03, T:0.57
Consensus pattern (26 bp):
TAAATTTTCAAATTTATTGAATTATT
Found at i:45749632 original size:40 final size:39
Alignment explanation
Indices: 45749577--45749739 Score: 177
Period size: 40 Copynumber: 4.1 Consensus size: 39
45749567 TGAATGATAC
* * *
45749577 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTG-TTATAT
*
45749617 CCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCAATT-GTGCTAG-TGTTATAT
* * * *
45749657 CCGGGGTAAGACCCGAAGGCAATTGTGCAAGT-TACCAAAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGT--TATAT
* *
45749697 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGTTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGTTATAT
45749736 CCGG
1 CCGG
45749740 TTAAATCCCG
Statistics
Matches: 104, Mismatches: 13, Indels: 13
0.80 0.10 0.10
Matches are distributed among these distances:
38 1 0.01
39 10 0.10
40 87 0.84
41 6 0.06
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.25
Consensus pattern (39 bp):
CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGTTATAT
Found at i:45757599 original size:40 final size:39
Alignment explanation
Indices: 45757544--45757706 Score: 186
Period size: 40 Copynumber: 4.1 Consensus size: 39
45757534 TGAATGATAC
* * *
45757544 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTG-TTATAT
*
45757584 CCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCAATT-GTGCTAG-TGTTATAT
* * *
45757624 CCGGGCTAAGACCCGAAGGCAATTGTGCAAGT-TACCAAAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGT--TATAT
* *
45757664 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGTTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGTTATAT
45757703 CCGG
1 CCGG
45757707 TTAAATCCCG
Statistics
Matches: 105, Mismatches: 12, Indels: 13
0.81 0.09 0.10
Matches are distributed among these distances:
38 1 0.01
39 10 0.10
40 88 0.84
41 6 0.06
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (39 bp):
CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGTTATAT
Found at i:45761785 original size:40 final size:39
Alignment explanation
Indices: 45761730--45761892 Score: 186
Period size: 40 Copynumber: 4.1 Consensus size: 39
45761720 TGAATGATAC
* * *
45761730 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTG-TTATAT
*
45761770 CCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCAATT-GTGCTAG-TGTTATAT
* * *
45761810 CCGGGCTAAGACCCGAAGGCAATTGTGCAAGT-TACCAAAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGT--TATAT
* *
45761850 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGTTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGTTATAT
45761889 CCGG
1 CCGG
45761893 TTAAATCCGA
Statistics
Matches: 105, Mismatches: 12, Indels: 13
0.81 0.09 0.10
Matches are distributed among these distances:
38 1 0.01
39 10 0.10
40 88 0.84
41 6 0.06
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (39 bp):
CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGTTATAT
Found at i:45769736 original size:40 final size:39
Alignment explanation
Indices: 45769681--45769843 Score: 186
Period size: 40 Copynumber: 4.1 Consensus size: 39
45769671 TGAATGATAC
* * *
45769681 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTG-TTATAT
*
45769721 CCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCAATT-GTGCTAG-TGTTATAT
* * *
45769761 CCGGGCTAAGACCCGAAGGCAATTGTGCAAGT-TACCAAAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGT--TATAT
* *
45769801 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGTTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGTTATAT
45769840 CCGG
1 CCGG
45769844 TTAAATCCCG
Statistics
Matches: 105, Mismatches: 12, Indels: 13
0.81 0.09 0.10
Matches are distributed among these distances:
38 1 0.01
39 10 0.10
40 88 0.84
41 6 0.06
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (39 bp):
CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGTTATAT
Found at i:45781102 original size:20 final size:20
Alignment explanation
Indices: 45781036--45781102 Score: 98
Period size: 20 Copynumber: 3.4 Consensus size: 20
45781026 ATTTTAATAA
*
45781036 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
*
45781056 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
* *
45781076 GCATGATATATATGATATGC
1 ACATGATATGTATGATATGC
45781096 ACATGAT
1 ACATGAT
45781103 GTATTCATAA
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.34, C:0.12, G:0.21, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:45781227 original size:49 final size:49
Alignment explanation
Indices: 45781152--45781297 Score: 237
Period size: 49 Copynumber: 3.0 Consensus size: 49
45781142 GAGGAAGTGC
*
45781152 AAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTATTA
1 AAAAGGGCTTATGTCCCAGTTATTAAAAGGGCTTATGCCCCAGTTATTA
*
45781201 AAAAGGGCTTATGTCCCAGTTGTTAAAAGGGCTTATGCCCCAGTTATT-
1 AAAAGGGCTTATGTCCCAGTTATTAAAAGGGCTTATGCCCCAGTTATTA
45781249 AAAAGGGCTTAT-TCCCTA-TTATTAAAAGGGCTT-TGCCCCAGTTATTA
1 AAAAGGGCTTATGTCCC-AGTTATTAAAAGGGCTTATGCCCCAGTTATTA
45781296 AA
1 AA
45781298 GAGGCTAGGC
Statistics
Matches: 92, Mismatches: 3, Indels: 6
0.91 0.03 0.06
Matches are distributed among these distances:
46 13 0.14
47 20 0.22
48 13 0.14
49 46 0.50
ACGTcount: A:0.30, C:0.19, G:0.20, T:0.31
Consensus pattern (49 bp):
AAAAGGGCTTATGTCCCAGTTATTAAAAGGGCTTATGCCCCAGTTATTA
Found at i:45781303 original size:23 final size:24
Alignment explanation
Indices: 45781152--45781297 Score: 233
Period size: 24 Copynumber: 6.1 Consensus size: 24
45781142 GAGGAAGTGC
45781152 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
45781176 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
* *
45781200 AAAAAGGGCTTATGTCCCAGTTGTT
1 -AAAAGGGCTTATGCCCCAGTTATT
45781225 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
* *
45781249 AAAAGGGCTTATTCCCTA-TTATT
1 AAAAGGGCTTATGCCCCAGTTATT
45781272 AAAAGGGCTT-TGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
45781295 AAA
1 AAA
45781298 GAGGCTAGGC
Statistics
Matches: 112, Mismatches: 8, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
22 5 0.04
23 23 0.21
24 62 0.55
25 22 0.20
ACGTcount: A:0.30, C:0.19, G:0.20, T:0.31
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:45784635 original size:18 final size:18
Alignment explanation
Indices: 45784612--45784649 Score: 58
Period size: 20 Copynumber: 2.0 Consensus size: 18
45784602 TGATGATGAA
45784612 AAAAAAAAGAAAAGAGAAAG
1 AAAAAAAA-AAAA-AGAAAG
45784632 AAAAAAAAAAAAAGAAAG
1 AAAAAAAAAAAAAGAAAG
45784650 GCTCTCATGT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 6 0.33
19 4 0.22
20 8 0.44
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (18 bp):
AAAAAAAAAAAAAGAAAG
Found at i:45785962 original size:40 final size:40
Alignment explanation
Indices: 45785904--45786121 Score: 307
Period size: 40 Copynumber: 5.5 Consensus size: 40
45785894 TGGATGATAA
* * *
45785904 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
*
45785944 CCAGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
45785984 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
45786024 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
45786064 CCGGGCTATGTCCCGAAGGCATTCGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
45786104 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
45786122 TACTTGGCTT
Statistics
Matches: 163, Mismatches: 13, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
39 16 0.10
40 147 0.90
ACGTcount: A:0.22, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:45797441 original size:13 final size:13
Alignment explanation
Indices: 45797423--45797447 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
45797413 CCAAGCACAT
45797423 GCCTGTGTCCCTG
1 GCCTGTGTCCCTG
45797436 GCCTGTGTCCCT
1 GCCTGTGTCCCT
45797448 CACACGGCCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.40, G:0.28, T:0.32
Consensus pattern (13 bp):
GCCTGTGTCCCTG
Found at i:45802442 original size:29 final size:29
Alignment explanation
Indices: 45802370--45802445 Score: 86
Period size: 28 Copynumber: 2.7 Consensus size: 29
45802360 GTCGTCATCG
* *
45802370 TCCCTTTTCATAG-TCGATAGTAAAACTA
1 TCCCTTTTCATTGATCGATGGTAAAACTA
* *
45802398 TCCATTTTCA-TAATCGATGGTCAAAAC-A
1 TCCCTTTTCATTGATCGATGGT-AAAACTA
45802426 TCCCTTTTCATTGATCGATG
1 TCCCTTTTCATTGATCGATG
45802446 ATCATCGATA
Statistics
Matches: 39, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
28 26 0.67
29 13 0.33
ACGTcount: A:0.29, C:0.22, G:0.12, T:0.37
Consensus pattern (29 bp):
TCCCTTTTCATTGATCGATGGTAAAACTA
Found at i:45808112 original size:27 final size:26
Alignment explanation
Indices: 45808056--45808112 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
45808046 CAACCTTAAC
* * *
45808056 CCTAGGGGTATATTAGTAATTTTGCT
1 CCTAGGGGTAAATTAGTAATTTTCCA
*
45808082 CCTAGGGGTAAATTTGTAAATTTTCCA
1 CCTAGGGGTAAATTAGT-AATTTTCCA
45808109 CCTA
1 CCTA
45808113 TAAAGGTATT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
26 15 0.58
27 11 0.42
ACGTcount: A:0.26, C:0.16, G:0.19, T:0.39
Consensus pattern (26 bp):
CCTAGGGGTAAATTAGTAATTTTCCA
Found at i:45812795 original size:30 final size:30
Alignment explanation
Indices: 45812759--45812818 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
45812749 AATTCGAGCC
*
45812759 TAGGGGCAAAAGTGTAATTATGCAAAAGTT
1 TAGGGGCAAAAATGTAATTATGCAAAAGTT
* *
45812789 TAGGGGCAAAAATGTAATTTTGCCAAAGTT
1 TAGGGGCAAAAATGTAATTATGCAAAAGTT
45812819 CGTATTAAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.38, C:0.08, G:0.25, T:0.28
Consensus pattern (30 bp):
TAGGGGCAAAAATGTAATTATGCAAAAGTT
Found at i:45824811 original size:55 final size:53
Alignment explanation
Indices: 45824734--45824884 Score: 142
Period size: 53 Copynumber: 2.8 Consensus size: 53
45824724 TAAGTTTTAC
* * *
45824734 AAGGAAAGGAAATCATGTAAGACCATGTCAAGACATGGCACTGATAAACTACTAT
1 AAGGAAAGGATACCATGTAAGACCATGTCAAGACATGGCAATGAT-AACTAC-AT
* ** * * * * *
45824789 AAGGCAAA-GATCCCATGTAAGACCATACCAAGGCATGGCAATGGTGAGTTCAT
1 AAGG-AAAGGATACCATGTAAGACCATGTCAAGACATGGCAATGATAACTACAT
* * *
45824842 AAGGAAAGGATACCACGTAAGACCATGTTAAGACATGGAAATG
1 AAGGAAAGGATACCATGTAAGACCATGTCAAGACATGGCAATG
45824885 GTAAGTTTAA
Statistics
Matches: 76, Mismatches: 18, Indels: 6
0.76 0.18 0.06
Matches are distributed among these distances:
52 3 0.04
53 34 0.45
54 3 0.04
55 33 0.43
56 3 0.04
ACGTcount: A:0.41, C:0.17, G:0.23, T:0.19
Consensus pattern (53 bp):
AAGGAAAGGATACCATGTAAGACCATGTCAAGACATGGCAATGATAACTACAT
Found at i:45824879 original size:53 final size:54
Alignment explanation
Indices: 45824685--45824908 Score: 193
Period size: 54 Copynumber: 4.2 Consensus size: 54
45824675 ATTAAGTTTT
* * * * * *
45824685 AAGGATACCAAGTAAGAACATGCCAAGGCATGGCATTGGTAAGTTTTACAAGGA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTTCATAAGGA
* * * * * ** *
45824739 AAGGAAATCATGTAAGACCATGTCAAGACATGGCACTGATAAACTACTATAAGGCA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTTC-ATAAGG-A
* * * *
45824795 AA-GATCCCATGTAAGACCATACCAAGGCATGGCAATGGTGAG-TTCATAAGGA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTTCATAAGGA
* ** * * *
45824847 AAGGATACCACGTAAGACCATGTTAAGACATGGAAATGGTAAGTTTAAAAAGGA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTTCATAAGGA
45824901 AAGG-TACC
1 AAGGATACC
45824909 CGTGTATCCT
Statistics
Matches: 132, Mismatches: 34, Indels: 9
0.75 0.19 0.05
Matches are distributed among these distances:
52 3 0.02
53 42 0.32
54 49 0.37
55 35 0.27
56 3 0.02
ACGTcount: A:0.41, C:0.16, G:0.24, T:0.20
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTTCATAAGGA
Found at i:45841693 original size:14 final size:14
Alignment explanation
Indices: 45841676--45841708 Score: 66
Period size: 14 Copynumber: 2.4 Consensus size: 14
45841666 TTATTGCCTT
45841676 TTTTTTATATTATA
1 TTTTTTATATTATA
45841690 TTTTTTATATTATA
1 TTTTTTATATTATA
45841704 TTTTT
1 TTTTT
45841709 ATTTGTTAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (14 bp):
TTTTTTATATTATA
Found at i:45848702 original size:40 final size:40
Alignment explanation
Indices: 45848657--45848786 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
45848647 CGGAATACAA
45848657 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* ** *
45848697 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
45848737 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
45848777 CCGGATATAA
1 CCGGATATAA
45848787 TTTCCAGCAT
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 3 0.04
40 73 0.96
ACGTcount: A:0.24, C:0.28, G:0.25, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:45848801 original size:40 final size:40
Alignment explanation
Indices: 45848657--45848820 Score: 145
Period size: 40 Copynumber: 4.1 Consensus size: 40
45848647 CGGAATACAA
* **
45848657 CCGGATATAACCACGTGCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCACCAGCAC-AATTGCCTTCGGGTCTTAGC
* *
45848697 CCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-CAGCAC-AATTGCCTTCGGGTCTTAGC
* ** * *
45848737 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
** * * *
45848777 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
45848817 CCGG
1 CCGG
45848821 GTATCATTCA
Statistics
Matches: 100, Mismatches: 21, Indels: 6
0.79 0.17 0.05
Matches are distributed among these distances:
39 2 0.02
40 98 0.98
ACGTcount: A:0.22, C:0.28, G:0.25, T:0.25
Consensus pattern (40 bp):
CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
Found at i:45850787 original size:40 final size:40
Alignment explanation
Indices: 45850743--45850853 Score: 147
Period size: 40 Copynumber: 2.8 Consensus size: 40
45850733 ATAACCACGT
*
45850743 GCACGAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCACGAATGCCTTCGGGTCTTAGCCCGGATAGAA-GCACTA
*
45850783 GCACGAATGCCTTCGGGTCTTAGCCCGGAT-GTAGCCACTA
1 GCACGAATGCCTTCGGGTCTTAGCCCGGATAGAAG-CACTA
*
45850823 GCAC-AATTGCCTTCGGGTCTTAACCCGGATA
1 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATA
45850854 TAATTTCCAG
Statistics
Matches: 64, Mismatches: 3, Indels: 7
0.86 0.04 0.09
Matches are distributed among these distances:
38 1 0.02
39 4 0.06
40 59 0.92
ACGTcount: A:0.22, C:0.29, G:0.26, T:0.23
Consensus pattern (40 bp):
GCACGAATGCCTTCGGGTCTTAGCCCGGATAGAAGCACTA
Found at i:45850871 original size:40 final size:40
Alignment explanation
Indices: 45850727--45850890 Score: 145
Period size: 40 Copynumber: 4.1 Consensus size: 40
45850717 CGGAATACAA
* **
45850727 CCGGATATAACCACGTGCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCACCAGCAC-AATTGCCTTCGGGTCTTAGC
* *
45850767 CCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-CAGCAC-AATTGCCTTCGGGTCTTAGC
* ** * *
45850807 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
** * * *
45850847 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
45850887 CCGG
1 CCGG
45850891 GTATCATTCA
Statistics
Matches: 100, Mismatches: 21, Indels: 6
0.79 0.17 0.05
Matches are distributed among these distances:
39 2 0.02
40 98 0.98
ACGTcount: A:0.22, C:0.28, G:0.25, T:0.25
Consensus pattern (40 bp):
CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
Found at i:45863428 original size:27 final size:28
Alignment explanation
Indices: 45863372--45863441 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
45863362 AAACTTGTAC
45863372 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
45863400 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
45863427 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
45863442 GACTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:45863452 original size:27 final size:27
Alignment explanation
Indices: 45863372--45863453 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
45863362 AAACTTGTAC
* *
45863372 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
45863400 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
45863427 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
45863454 GCTTTTGAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
26 1 0.02
27 30 0.61
28 18 0.37
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:45871447 original size:27 final size:28
Alignment explanation
Indices: 45871391--45871460 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
45871381 AAACTTGTAC
45871391 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
45871419 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
45871446 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
45871461 GACTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:45871471 original size:27 final size:27
Alignment explanation
Indices: 45871391--45871472 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
45871381 AAACTTGTAC
* *
45871391 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
45871419 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
45871446 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
45871473 GCTTTTGAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
26 1 0.02
27 30 0.61
28 18 0.37
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:45881658 original size:40 final size:40
Alignment explanation
Indices: 45881609--45881875 Score: 421
Period size: 40 Copynumber: 6.7 Consensus size: 40
45881599 CCAGCATGAT
* *
45881609 TGCTCTTCGGGACCTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
*
45881649 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
* * *
45881689 TGCTCTTCGGAACTTAGTCCGGATACGTCACTAGCATGAA
1 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
*
45881729 TGCTCTTCGGAACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
*
45881769 TGCTCTTCGGAACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
* * *
45881809 TGCTCTTCGGAACTTAGTCCGGATACGTCACTAGCATGAA
1 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
45881849 TGCTCTTCGG-ACTTAGCCCGGAT-CATC
1 TGCTCTTCGGAACTTAGCCCGGATACATC
45881876 GTCGAGACCT
Statistics
Matches: 212, Mismatches: 15, Indels: 2
0.93 0.07 0.01
Matches are distributed among these distances:
38 3 0.01
39 12 0.06
40 197 0.93
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
Found at i:45881806 original size:120 final size:119
Alignment explanation
Indices: 45881593--45881875 Score: 487
Period size: 120 Copynumber: 2.4 Consensus size: 119
45881583 GCCCGAATAC
* * *
45881593 ACGTCACCAGCATGATTGCTCTTCGGGACCTAGCCCGGATACATCACTAGCACGAATGCTCTTCG
1 ACGTCACTAGCATGAATGCTCTTC-GGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCG
*
45881658 GAACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGAT
65 GAACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGAT
*
45881713 ACGTCACTAGCATGAATGCTCTTCGGAACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCG
1 ACGTCACTAGCATGAATGCTCTTCGG-ACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCG
*
45881778 GAACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGAT
65 GAACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGAT
45881833 ACGTCACTAGCATGAATGCTCTTCGGACTTAGCCCGGAT-CATC
1 ACGTCACTAGCATGAATGCTCTTCGGACTTAGCCCGGATACATC
45881876 GTCGAGACCT
Statistics
Matches: 155, Mismatches: 7, Indels: 4
0.93 0.04 0.02
Matches are distributed among these distances:
118 3 0.02
119 15 0.10
120 137 0.88
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.25
Consensus pattern (119 bp):
ACGTCACTAGCATGAATGCTCTTCGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGG
AACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGAT
Found at i:45884496 original size:47 final size:47
Alignment explanation
Indices: 45884421--45884531 Score: 161
Period size: 47 Copynumber: 2.4 Consensus size: 47
45884411 CCCCTCGGGA
* * *
45884421 CTTATCACATT-TATACACTTTCATATTCATCGCATTGGCCATTCGGC
1 CTTATCAC-TTATATACACTTTCACATTCATCACATCGGCCATTCGGC
*
45884468 CTTATCACTTATATACACTTTGACATTCATCACATCGGCCATTCGGC
1 CTTATCACTTATATACACTTTCACATTCATCACATCGGCCATTCGGC
*
45884515 CTTATCACATATATACA
1 CTTATCACTTATATACA
45884532 TCTCATACAT
Statistics
Matches: 58, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
46 2 0.03
47 56 0.97
ACGTcount: A:0.27, C:0.28, G:0.09, T:0.36
Consensus pattern (47 bp):
CTTATCACTTATATACACTTTCACATTCATCACATCGGCCATTCGGC
Found at i:45884587 original size:46 final size:46
Alignment explanation
Indices: 45884535--45884716 Score: 337
Period size: 46 Copynumber: 4.0 Consensus size: 46
45884525 ATATACATCT
* * *
45884535 CATACATGTTTCATACTAGCCATTTGGCTTTACCACACATATATCT
1 CATACATATTTCACACTAGCCATTTGGCTTTACCACACATATATCA
45884581 CATACATATTTCACACTAGCCATTTGGCTTTACCACACATATATCA
1 CATACATATTTCACACTAGCCATTTGGCTTTACCACACATATATCA
45884627 CATACATATTTCACACTAGCCATTTGGCTTTACCACACATATATCA
1 CATACATATTTCACACTAGCCATTTGGCTTTACCACACATATATCA
45884673 CATACATATTTCACACTAGCCATTTGGCTTTACCACACATATAT
1 CATACATATTTCACACTAGCCATTTGGCTTTACCACACATATAT
45884717 ATATTTAACT
Statistics
Matches: 133, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 133 1.00
ACGTcount: A:0.31, C:0.27, G:0.07, T:0.34
Consensus pattern (46 bp):
CATACATATTTCACACTAGCCATTTGGCTTTACCACACATATATCA
Found at i:45890247 original size:10 final size:10
Alignment explanation
Indices: 45890232--45890256 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
45890222 TGTAGGCCGA
45890232 GGCCATATTG
1 GGCCATATTG
45890242 GGCCATATTG
1 GGCCATATTG
45890252 GGCCA
1 GGCCA
45890257 AGTTGTGCCG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.20, C:0.24, G:0.32, T:0.24
Consensus pattern (10 bp):
GGCCATATTG
Found at i:45911895 original size:28 final size:28
Alignment explanation
Indices: 45911849--45911916 Score: 104
Period size: 28 Copynumber: 2.5 Consensus size: 28
45911839 TTTAAAACCC
*
45911849 TAGGGGT-ATATCGGTAATTTTGCTATT
1 TAGGGGTAATTTCGGTAATTTTGCTATT
*
45911876 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTATT
45911904 TA-GGGTAATTTCG
1 TAGGGGTAATTTCG
45911917 TGATCTACGC
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
27 18 0.47
28 20 0.53
ACGTcount: A:0.21, C:0.09, G:0.26, T:0.44
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTGCTATT
Found at i:45912621 original size:54 final size:53
Alignment explanation
Indices: 45912553--45912702 Score: 230
Period size: 54 Copynumber: 2.8 Consensus size: 53
45912543 CTACCCTACA
* *
45912553 AGGGTATTTCGGTAATTTTATAAACAAAGGGTATTTTAGTAATTTTACAAACC
1 AGGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAACC
* *
45912606 AGGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTAGTAATTTTACAAACT
1 A-GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAACC
* *
45912660 AGGGTA-TTTGGTGATTTTATAAACCAAGGGTATTTTGGTAATT
1 AGGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATT
45912703 CTGTAAATTG
Statistics
Matches: 89, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
52 34 0.38
53 6 0.07
54 49 0.55
ACGTcount: A:0.32, C:0.07, G:0.21, T:0.40
Consensus pattern (53 bp):
AGGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAACC
Found at i:45912709 original size:27 final size:27
Alignment explanation
Indices: 45912551--45912702 Score: 200
Period size: 27 Copynumber: 5.7 Consensus size: 27
45912541 TTCTACCCTA
*
45912551 CAAGGGTATTTCGGTAATTTTATAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
* * *
45912578 AAAGGGTATTTTAGTAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
* *
45912605 CAGGGGTATTTTGGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
* *
45912632 CAAGGGTATTTTAGTAATTTTACAAA-
1 CAAGGGTATTTTGGTAATTTTATAAAC
* *
45912658 CTAGGGTA-TTTGGTGATTTTATAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
45912684 CAAGGGTATTTTGGTAATT
1 CAAGGGTATTTTGGTAATT
45912703 CTGTAAATTG
Statistics
Matches: 104, Mismatches: 19, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
25 14 0.13
26 14 0.13
27 76 0.73
ACGTcount: A:0.32, C:0.08, G:0.20, T:0.39
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTATAAAC
Found at i:45912728 original size:79 final size:81
Alignment explanation
Indices: 45912562--45912729 Score: 180
Period size: 79 Copynumber: 2.1 Consensus size: 81
45912552 AAGGGTATTT
* * *
45912562 CGGTAATTTTATAAACAAAGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTG
1 CGGTAATTTTACAAACAAAGGGTATTTTAGTAATTTTACAAACCAAGGGTATTTTGGTAATTCTG
***
45912627 TAAACCAAGGGTATTT
66 TAAACCAAGGGTAAAA
** * * * *
45912643 TAGTAATTTTACAAAC-TAGGGTA-TTTGGTGATTTTATAAACCAAGGGTATTTTGGTAATTCTG
1 CGGTAATTTTACAAACAAAGGGTATTTTAGTAATTTTACAAACCAAGGGTATTTTGGTAATTCTG
**
45912706 TAAATTGAA-GGTAAAA
66 TAAA-CCAAGGGTAAAA
45912722 CGGTAATT
1 CGGTAATT
45912730 CTGTAAACTG
Statistics
Matches: 70, Mismatches: 16, Indels: 4
0.78 0.18 0.04
Matches are distributed among these distances:
79 49 0.70
80 8 0.11
81 13 0.19
ACGTcount: A:0.34, C:0.08, G:0.20, T:0.38
Consensus pattern (81 bp):
CGGTAATTTTACAAACAAAGGGTATTTTAGTAATTTTACAAACCAAGGGTATTTTGGTAATTCTG
TAAACCAAGGGTAAAA
Found at i:45912782 original size:81 final size:81
Alignment explanation
Indices: 45912695--45912945 Score: 371
Period size: 81 Copynumber: 3.1 Consensus size: 81
45912685 AAGGGTATTT
* * * *
45912695 TGGTAATTCTGTAAATTGAAGGTAAAACGGTAATTCTGTAAACTGAGGGTAAAACGGTAATTCTA
1 TGGTAATTCTGTAAATTGAGGGTAAAACAGTAATTCTGTAAACTGAGGGTAAAATGGTAATTCTG
45912760 TAAATCGAGGGTAAAA
66 TAAATCGAGGGTAAAA
* * * * *
45912776 TAGTAATTCTGTAAACTGAGGGGAAAACAGTAATTCTGTAAA-TCGAGGATAAAATAGTAATTCT
1 TGGTAATTCTGTAAATTGAGGGTAAAACAGTAATTCTGTAAACT-GAGGGTAAAATGGTAATTCT
45912840 GTAAA-CTGAGGGTAAAA
65 GTAAATC-GAGGGTAAAA
* *
45912857 CGGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTGTAAACTGAGGGTAAAATGGTAATTCTG
1 TGGTAATTCTGTAAATTGAGGGTAAAACAGTAATTCTGTAAACTGAGGGTAAAATGGTAATTCTG
45912922 TAAATCGAGGGTAAAA
66 TAAATCGAGGGTAAAA
45912938 TGGTAATT
1 TGGTAATT
45912946 TTACAAGTCG
Statistics
Matches: 149, Mismatches: 17, Indels: 8
0.86 0.10 0.05
Matches are distributed among these distances:
80 2 0.01
81 145 0.97
82 2 0.01
ACGTcount: A:0.39, C:0.09, G:0.24, T:0.28
Consensus pattern (81 bp):
TGGTAATTCTGTAAATTGAGGGTAAAACAGTAATTCTGTAAACTGAGGGTAAAATGGTAATTCTG
TAAATCGAGGGTAAAA
Found at i:45912959 original size:27 final size:27
Alignment explanation
Indices: 45912697--45912937 Score: 310
Period size: 27 Copynumber: 8.9 Consensus size: 27
45912687 GGGTATTTTG
* * *
45912697 GTAATTCTGTAAATTGAAGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACA
*
45912724 GTAATTCTGTAAA-CTGAGGGTAAAACG
1 GTAATTCTGTAAATC-GAGGGTAAAACA
* *
45912751 GTAATTCTATAAATCGAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACA
*
45912778 GTAATTCTGTAAA-CTGAGGGGAAAACA
1 GTAATTCTGTAAATC-GAGGGTAAAACA
* *
45912805 GTAATTCTGTAAATCGAGGATAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACA
*
45912832 GTAATTCTGTAAA-CTGAGGGTAAAACG
1 GTAATTCTGTAAATC-GAGGGTAAAACA
45912859 GTAATTCTGTAAATCGAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACA
**
45912886 GTAATTCTGTAAA-CTGAGGGTAAAATG
1 GTAATTCTGTAAATC-GAGGGTAAAACA
45912913 GTAATTCTGTAAATCGAGGGTAAAA
1 GTAATTCTGTAAATCGAGGGTAAAA
45912938 TGGTAATTTT
Statistics
Matches: 189, Mismatches: 17, Indels: 16
0.85 0.08 0.07
Matches are distributed among these distances:
26 3 0.02
27 182 0.96
28 4 0.02
ACGTcount: A:0.40, C:0.09, G:0.23, T:0.27
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAACA
Found at i:45912959 original size:54 final size:54
Alignment explanation
Indices: 45912696--45912945 Score: 401
Period size: 54 Copynumber: 4.6 Consensus size: 54
45912686 AGGGTATTTT
* * **
45912696 GGTAATTCTGTAAATTGAAGGTAAAACGGTAATTCTGTAAACTGAGGGTAAAAC
1 GGTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTGTAAACTGAGGGTAAAAC
* *
45912750 GGTAATTCTATAAATCGAGGGTAAAATAGTAATTCTGTAAACTGAGGGGAAAAC
1 GGTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTGTAAACTGAGGGTAAAAC
* *
45912804 AGTAATTCTGTAAATCGAGGATAAAATAGTAATTCTGTAAACTGAGGGTAAAAC
1 GGTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTGTAAACTGAGGGTAAAAC
* *
45912858 GGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTGTAAACTGAGGGTAAAAT
1 GGTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTGTAAACTGAGGGTAAAAC
*
45912912 GGTAATTCTGTAAATCGAGGGTAAAATGGTAATT
1 GGTAATTCTGTAAATCGAGGGTAAAATAGTAATT
45912946 TTACAAGTCG
Statistics
Matches: 180, Mismatches: 16, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
54 180 1.00
ACGTcount: A:0.40, C:0.09, G:0.24, T:0.28
Consensus pattern (54 bp):
GGTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTGTAAACTGAGGGTAAAAC
Found at i:45913947 original size:51 final size:48
Alignment explanation
Indices: 45913849--45914073 Score: 252
Period size: 51 Copynumber: 4.5 Consensus size: 48
45913839 GTTACAAGCT
* * * *
45913849 TGCACTTATTACTACACATGCGACCAATTATCCGGTACACGTAGTAGCC
1 TGCACTTAGTACTACACACGTGACCAATTAT-CGGTACACATAGTAGCC
* *
45913898 TGCACTTAGTACTACACACGTGATCGAAGTTATCAGGTACGCATAGTAGCC
1 TGCACTTAGTACTACACACGTGA-CCAA-TTATC-GGTACACATAGTAGCC
* ** * *
45913949 TGCACTTAGTACTACACAAGTGATTGAAGTTATCGTGTACGCATAGTAGCA
1 TGCACTTAGTACTACACACGTGA-CCAA-TTATCG-GTACACATAGTAGCC
* * *
45914000 TGCACTTAGTACTACACATGCGACCAATTATCTGGTACACGTAGTAGCC
1 TGCACTTAGTACTACACACGTGACCAATTATC-GGTACACATAGTAGCC
45914049 TGCACTTAGTACTACACACGTGACC
1 TGCACTTAGTACTACACACGTGACC
45914074 TCACAATAGA
Statistics
Matches: 153, Mismatches: 18, Indels: 10
0.85 0.10 0.06
Matches are distributed among these distances:
49 60 0.39
50 8 0.05
51 85 0.56
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (48 bp):
TGCACTTAGTACTACACACGTGACCAATTATCGGTACACATAGTAGCC
Found at i:45914045 original size:100 final size:102
Alignment explanation
Indices: 45913890--45914071 Score: 278
Period size: 100 Copynumber: 1.8 Consensus size: 102
45913880 CCGGTACACG
* * * *
45913890 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCAGGTACGCATAGTAGCCTGCACT
1 TAGTAGCATGCACTTAGTACTACACACGCGATCCAAGTTATCAGGTACACATAGTAGCCTGCACT
45913955 TAGTACTACACAAGTGATTGAAGTTATCGTGTACGCA
66 TAGTACTACACAAGTGATTGAAGTTATCGTGTACGCA
* * *
45913992 TAGTAGCATGCACTTAGTACTACACATGCGA-CCAA-TTATCTGGTACACGTAGTAGCCTGCACT
1 TAGTAGCATGCACTTAGTACTACACACGCGATCCAAGTTATCAGGTACACATAGTAGCCTGCACT
*
45914055 TAGTACTACACACGTGA
66 TAGTACTACACAAGTGA
45914072 CCTCACAATA
Statistics
Matches: 72, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
100 41 0.57
101 3 0.04
102 28 0.39
ACGTcount: A:0.30, C:0.23, G:0.20, T:0.27
Consensus pattern (102 bp):
TAGTAGCATGCACTTAGTACTACACACGCGATCCAAGTTATCAGGTACACATAGTAGCCTGCACT
TAGTACTACACAAGTGATTGAAGTTATCGTGTACGCA
Found at i:45920862 original size:29 final size:28
Alignment explanation
Indices: 45920829--45920932 Score: 118
Period size: 29 Copynumber: 3.6 Consensus size: 28
45920819 GTGACGAGAT
* *
45920829 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTG-AATATA
* * *
45920858 CGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTT-GAATATA
* *
45920887 TGGCACTATGTGTGCGGGCTTGAATCATA
1 TGGCACTAAGTGTGCGAGCTTGAAT-ATA
45920916 TGGCACTAAGTGTGCGA
1 TGGCACTAAGTGTGCGA
45920933 ACTCTACACA
Statistics
Matches: 61, Mismatches: 12, Indels: 4
0.79 0.16 0.05
Matches are distributed among these distances:
28 3 0.05
29 57 0.93
30 1 0.02
ACGTcount: A:0.22, C:0.16, G:0.33, T:0.29
Consensus pattern (28 bp):
TGGCACTAAGTGTGCGAGCTTGAATATA
Found at i:45929622 original size:40 final size:40
Alignment explanation
Indices: 45929577--45929744 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
45929567 CGGAATATAA
45929577 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
45929617 CCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
45929657 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
45929697 CCGGATATAATTTCCAGCATAATTGTCTTCGGGAT-TTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGG-TCTTAGC
45929737 CCGGATAT
1 CCGGATAT
45929745 CATTCAATTT
Statistics
Matches: 103, Mismatches: 23, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
39 1 0.01
40 101 0.98
41 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:45929727 original size:80 final size:80
Alignment explanation
Indices: 45929593--45929742 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 80
45929583 ATAATCACGT
*
45929593 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGAT-TTAGC
45929657 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * * *
45929673 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTTAG
45929736 CCCGGAT
64 CCCGGAT
45929743 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
79 3 0.05
80 57 0.93
81 1 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Done.