Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr03 135709677
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 135709677
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 152 of 438
Found at i:45938508 original size:93 final size:93
Alignment explanation
Indices: 45938396--45938567 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
45938386 GCCCATAAGT
* *
45938396 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
45938461 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
45938489 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
45938554 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
45938568 AAATCCTAGT
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:45938563 original size:46 final size:46
Alignment explanation
Indices: 45938388--45938563 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
45938378 TGTAACCCGC
* * *
45938388 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
45938434 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
45938484 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
45938527 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
45938564 TGCCAAATCC
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:45940959 original size:29 final size:29
Alignment explanation
Indices: 45940920--45941007 Score: 97
Period size: 29 Copynumber: 3.0 Consensus size: 29
45940910 CAAAGATAAC
*
45940920 AAGAAAACCGAATAAAGAAATCCAAGATA
1 AAGAAACCCGAATAAAGAAATCCAAGATA
*
45940949 GAGAAACCCGAATAAAGAAATCC-AGAATA
1 AAGAAACCCGAATAAAGAAATCCAAG-ATA
* * * *
45940978 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGA-AACCCGAATAAAGAAATCCAAGATA
45941008 CGATACTATG
Statistics
Matches: 49, Mismatches: 7, Indels: 5
0.80 0.11 0.08
Matches are distributed among these distances:
28 2 0.04
29 27 0.55
30 18 0.37
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (29 bp):
AAGAAACCCGAATAAAGAAATCCAAGATA
Found at i:45940978 original size:15 final size:15
Alignment explanation
Indices: 45940920--45940998 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
45940910 CAAAGATAAC
*
45940920 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
45940934 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
45940949 GAGAAA-CCCGAATA
1 AAGAAATCCAGAATA
45940963 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
45940978 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
45940993 AAGAAA
1 AAGAAA
45940999 CCCAAGATAC
Statistics
Matches: 53, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
14 19 0.36
15 34 0.64
ACGTcount: A:0.58, C:0.14, G:0.18, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:45941007 original size:15 final size:15
Alignment explanation
Indices: 45940931--45941007 Score: 77
Period size: 15 Copynumber: 5.2 Consensus size: 15
45940921 AGAAAACCGA
45940931 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* * *
45940946 ATAGAGAAACCCGA-
1 ATAAAGAAATCCAAG
45940960 ATAAAGAAATCC-AG
1 ATAAAGAAATCCAAG
* *
45940974 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
45940990 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
45941005 ATA
1 ATA
45941008 CGATACTATG
Statistics
Matches: 49, Mismatches: 10, Indels: 6
0.75 0.15 0.09
Matches are distributed among these distances:
13 1 0.02
14 10 0.20
15 37 0.76
16 1 0.02
ACGTcount: A:0.56, C:0.16, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:45944067 original size:93 final size:93
Alignment explanation
Indices: 45943955--45944125 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
45943945 GCCCATAAGT
* *
45943955 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
45944020 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
45944048 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
45944113 CGAGTTCGGATGC
66 CGAGTTCGGATGC
45944126 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:45944141 original size:46 final size:46
Alignment explanation
Indices: 45943947--45944127 Score: 233
Period size: 46 Copynumber: 3.9 Consensus size: 46
45943937 TGTAACCCGC
* * *
45943947 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
45943993 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
45944043 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
*
45944086 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTC
45944128 AACCATCCTA
Statistics
Matches: 116, Mismatches: 12, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 72 0.62
47 32 0.28
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:45945693 original size:40 final size:40
Alignment explanation
Indices: 45945638--45945845 Score: 258
Period size: 40 Copynumber: 5.2 Consensus size: 40
45945628 TGAATGATAC
* *
45945638 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* *
45945678 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* *
45945718 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATTATAT
* * ** *
45945758 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* * * *
45945798 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
45945838 CC-GGCTAA
1 CCGGGCTAA
45945846 ATTCCGAAGA
Statistics
Matches: 146, Mismatches: 20, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
39 6 0.04
40 138 0.95
41 2 0.01
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
Found at i:45957510 original size:49 final size:50
Alignment explanation
Indices: 45957438--45957670 Score: 263
Period size: 49 Copynumber: 4.7 Consensus size: 50
45957428 AAAGCAATCA
* *
45957438 GGTACGCATAGTAGTCTGCACTTAGTACTACACATGCGA-CTAATTATCC
1 GGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCTAATTATCC
* * ** *
45957487 GGTACACATAGTAGCCTGCACTTAGTGCTACACATGTGACCTAACCATCT
1 GGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCTAATTATCC
** * * * * * *
45957537 AATACACGTAGTAGCCTGCACTTAGTACTACACAAGTGATCGAAGTTATCG
1 GGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCTAA-TTATCC
**
45957588 GGTACGTATAGTAGCCTGCACTTAGTACTACACATGCGACC-AATTATCC
1 GGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCTAATTATCC
* * *
45957637 TGTACACGTAGTAGCCTACACTTAGTACTACACA
1 GGTACACATAGTAGCCTGCACTTAGTACTACACA
45957671 CGTGACCTCA
Statistics
Matches: 151, Mismatches: 31, Indels: 4
0.81 0.17 0.02
Matches are distributed among these distances:
49 69 0.46
50 46 0.30
51 36 0.24
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (50 bp):
GGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCTAATTATCC
Found at i:45957619 original size:101 final size:98
Alignment explanation
Indices: 45957446--45957676 Score: 293
Period size: 101 Copynumber: 2.3 Consensus size: 98
45957436 CAGGTACGCA
* * * *
45957446 TAGTAGTCTGCACTTAGTACTACACATGCGACTAATTATCCGGTACACATAGTAGCCTGCACTTA
1 TAGTAGCCTGCACTTAGTACTACACAAGTGACGAATTATCCGGTACACATAGTAGCCTGCACTTA
* *
45957511 GTGCTACACATGTGACCTAACCAT-CTAATACACG
66 GTACTACACATGCGACC-AACCATCCT-ATACACG
* **
45957545 TAGTAGCCTGCACTTAGTACTACACAAGTGATCGAAGTTATCGGGTACGTATAGTAGCCTGCACT
1 TAGTAGCCTGCACTTAGTACTACACAAGTGA-CGAA-TTATCCGGTACACATAGTAGCCTGCACT
** *
45957610 TAGTACTACACATGCGACCAATTATCCTGTACACG
64 TAGTACTACACATGCGACCAACCATCCTATACACG
* *
45957645 TAGTAGCCTACACTTAGTACTACACACGTGAC
1 TAGTAGCCTGCACTTAGTACTACACAAGTGAC
45957677 CTCACAATAG
Statistics
Matches: 115, Mismatches: 14, Indels: 6
0.85 0.10 0.04
Matches are distributed among these distances:
99 29 0.25
100 42 0.37
101 44 0.38
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.27
Consensus pattern (98 bp):
TAGTAGCCTGCACTTAGTACTACACAAGTGACGAATTATCCGGTACACATAGTAGCCTGCACTTA
GTACTACACATGCGACCAACCATCCTATACACG
Found at i:45960289 original size:40 final size:40
Alignment explanation
Indices: 45960239--45960341 Score: 152
Period size: 40 Copynumber: 2.6 Consensus size: 40
45960229 AGTCTCTCAT
* * *
45960239 ACTAAGTGCCACATATAGCCAAAGCTATTTTGAATCGCAA
1 ACTAAGTGCCATATATAGCCAAAGCTATCTCGAATCGCAA
* * *
45960279 ACTAAGTGCCATATATAGCCGAAGCTATCTCGAGTCGCAC
1 ACTAAGTGCCATATATAGCCAAAGCTATCTCGAATCGCAA
45960319 ACTAAGTGCCATATATAGCCAAA
1 ACTAAGTGCCATATATAGCCAAA
45960342 TCATCATCAA
Statistics
Matches: 56, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 56 1.00
ACGTcount: A:0.36, C:0.24, G:0.17, T:0.23
Consensus pattern (40 bp):
ACTAAGTGCCATATATAGCCAAAGCTATCTCGAATCGCAA
Found at i:45966858 original size:49 final size:48
Alignment explanation
Indices: 45966805--45966930 Score: 157
Period size: 47 Copynumber: 2.6 Consensus size: 48
45966795 TGTGAAAACT
* *
45966805 AGTGTAAGACCATGTCTGGGACATGGCATCAGCCTCGATGACGAT-AGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCAGACTCGA-GA-GATGAGCC
* * * *
45966854 AGTGTAAGACGATGTCTGGGACATGGCAT-TGACTTGAGATATGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCAGACTCGAGAGATGAGCC
*
45966901 ACTGTAAGACCATGTCTGGGACATGGCATC
1 AGTGTAAGACCATGTCTGGGACATGGCATC
45966931 GACATTATAC
Statistics
Matches: 67, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
46 2 0.03
47 32 0.48
48 5 0.07
49 28 0.42
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCAGACTCGAGAGATGAGCC
Found at i:45971208 original size:40 final size:40
Alignment explanation
Indices: 45971163--45971336 Score: 202
Period size: 40 Copynumber: 4.5 Consensus size: 40
45971153 AGCTACTCGT
* *
45971163 ATGCCTTCGGGACATAGCCCGG-TTAGAGTAACTCGCACAA
1 ATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACAA
*
45971203 ATGCCTTCGGGACTTAACCCGGATTTAGTAACTCG--C-A
1 ATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAA
* *
45971240 A-GCCTTC-GGACTTAGTCCGGAATTAGTAACTCGCACAA
1 ATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAA
* *
45971278 ATGCCTTC-GGATCTTAGCCCGGATTTAGTCACTTAGCACAA
1 ATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCACAA
45971319 A-GCCTTCGGGACTTAGCC
1 ATGCCTTCGGGACTTAGCC
45971337 TGGACATCAT
Statistics
Matches: 116, Mismatches: 10, Indels: 16
0.82 0.07 0.11
Matches are distributed among these distances:
35 23 0.20
36 6 0.05
37 3 0.03
38 3 0.03
39 9 0.08
40 59 0.51
41 13 0.11
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
ATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAA
Found at i:45976093 original size:28 final size:28
Alignment explanation
Indices: 45976024--45976124 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
45976014 GACAAGATTG
* * * *
45976024 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
45976054 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
45976082 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
45976111 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
45976125 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:45982349 original size:78 final size:81
Alignment explanation
Indices: 45982238--45982419 Score: 232
Period size: 78 Copynumber: 2.3 Consensus size: 81
45982228 TACTCGTTCA
* *
45982238 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
* *
45982301 ATTTAGTAAC-TCGCACC
65 ATATAGTAACTTAGCA-C
**
45982318 AATGCCTTC-GG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
*
45982380 TATAGTCACTTAGCAC
66 TATAGTAACTTAGCAC
*
45982396 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
45982420 CATCATTCGA
Statistics
Matches: 89, Mismatches: 8, Indels: 10
0.83 0.07 0.09
Matches are distributed among these distances:
77 3 0.03
78 57 0.64
79 9 0.10
80 20 0.22
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TATAGTAACTTAGCAC
Found at i:45982419 original size:40 final size:40
Alignment explanation
Indices: 45982217--45982419 Score: 238
Period size: 40 Copynumber: 5.1 Consensus size: 40
45982207 TCGAATTTAA
** *
45982217 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
45982257 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
45982297 CCGGATTTAGTAACTCGCACCAATGCCTTC-GG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
45982335 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* *
45982375 CCGGATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
45982415 CCGGA
1 CCGGA
45982420 CATCATTCGA
Statistics
Matches: 141, Mismatches: 15, Indels: 14
0.83 0.09 0.08
Matches are distributed among these distances:
38 34 0.24
39 3 0.02
40 92 0.65
41 12 0.09
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:45986764 original size:46 final size:46
Alignment explanation
Indices: 45986697--45986869 Score: 214
Period size: 46 Copynumber: 3.8 Consensus size: 46
45986687 TGTAACCCGC
*
45986697 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
*
45986743 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCAT
* * *
45986793 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGAC--TCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
45986834 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
45986870 ATGCTCAACC
Statistics
Matches: 110, Mismatches: 8, Indels: 20
0.80 0.06 0.14
Matches are distributed among these distances:
40 1 0.01
41 3 0.03
42 1 0.01
43 2 0.02
44 29 0.26
46 35 0.32
47 28 0.25
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
Found at i:45986862 original size:91 final size:92
Alignment explanation
Indices: 45986705--45986873 Score: 304
Period size: 91 Copynumber: 1.8 Consensus size: 92
45986695 GCCCATAAGT
*
45986705 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACG-TCGCATCCATAAGTGAACTCGGACTCAACTCAA
45986770 CGAGTTCGGATGCCTAGTTACATCTCAC
65 CGAGTTCGGATGCCTAGTTACATCTCAC
*
45986798 GAACTCGGACTCAACTCAACGAGTTCGGAC-TCGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 GAACTCGGACTCAACTCAACGAGCTCGGACGTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
45986862 GAGTTCGGATGC
66 GAGTTCGGATGC
45986874 TCAACCATCC
Statistics
Matches: 74, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
91 46 0.62
93 28 0.38
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (92 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
GAGTTCGGATGCCTAGTTACATCTCAC
Found at i:45989285 original size:29 final size:29
Alignment explanation
Indices: 45989246--45989333 Score: 97
Period size: 29 Copynumber: 3.0 Consensus size: 29
45989236 CAAAGATAAC
*
45989246 AAGAAAACCGAATAAAGAAATCCAAGATA
1 AAGAAACCCGAATAAAGAAATCCAAGATA
*
45989275 GAGAAACCCGAATAAAGAAATCC-AGAATA
1 AAGAAACCCGAATAAAGAAATCCAAG-ATA
* * * *
45989304 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGA-AACCCGAATAAAGAAATCCAAGATA
45989334 CGATACTATG
Statistics
Matches: 49, Mismatches: 7, Indels: 5
0.80 0.11 0.08
Matches are distributed among these distances:
28 2 0.04
29 27 0.55
30 18 0.37
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (29 bp):
AAGAAACCCGAATAAAGAAATCCAAGATA
Found at i:45989304 original size:15 final size:15
Alignment explanation
Indices: 45989246--45989324 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
45989236 CAAAGATAAC
*
45989246 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
45989260 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
45989275 GAGAAA-CCCGAATA
1 AAGAAATCCAGAATA
45989289 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
45989304 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
45989319 AAGAAA
1 AAGAAA
45989325 CCCAAGATAC
Statistics
Matches: 53, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
14 19 0.36
15 34 0.64
ACGTcount: A:0.58, C:0.14, G:0.18, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:45989333 original size:15 final size:15
Alignment explanation
Indices: 45989257--45989333 Score: 77
Period size: 15 Copynumber: 5.2 Consensus size: 15
45989247 AGAAAACCGA
45989257 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* * *
45989272 ATAGAGAAACCCGA-
1 ATAAAGAAATCCAAG
45989286 ATAAAGAAATCC-AG
1 ATAAAGAAATCCAAG
* *
45989300 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
45989316 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
45989331 ATA
1 ATA
45989334 CGATACTATG
Statistics
Matches: 49, Mismatches: 10, Indels: 6
0.75 0.15 0.09
Matches are distributed among these distances:
13 1 0.02
14 10 0.20
15 37 0.76
16 1 0.02
ACGTcount: A:0.56, C:0.16, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:45992342 original size:46 final size:46
Alignment explanation
Indices: 45992275--45992448 Score: 214
Period size: 46 Copynumber: 3.8 Consensus size: 46
45992265 TGTAACCCGC
*
45992275 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
*
45992321 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCAT
* * * *
45992371 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGAC-ATCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
45992413 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
45992449 ATGCTCAACC
Statistics
Matches: 110, Mismatches: 9, Indels: 19
0.80 0.07 0.14
Matches are distributed among these distances:
41 1 0.01
42 3 0.03
43 1 0.01
44 3 0.03
45 28 0.25
46 35 0.32
47 28 0.25
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
Found at i:45992441 original size:92 final size:93
Alignment explanation
Indices: 45992283--45992452 Score: 306
Period size: 92 Copynumber: 1.8 Consensus size: 93
45992273 GCCCATAAGT
* *
45992283 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGATCGCATCCATAAGTGAACTCGGACTCAACTCAA
45992348 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
45992376 GAACTCGGACTCAACTCAACGAGTTCGGAC-ATCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGATCGCATCCATAAGTGAACTCGGACTCAACTCAA
45992440 CGAGTTCGGATGC
66 CGAGTTCGGATGC
45992453 TCAACCATCC
Statistics
Matches: 74, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
92 46 0.62
93 28 0.38
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGATCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:45997010 original size:40 final size:40
Alignment explanation
Indices: 45996925--45997035 Score: 138
Period size: 40 Copynumber: 2.8 Consensus size: 40
45996915 CTGGAAATTA
* *
45996925 TATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGGCTAC
1 TATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGT-GCTAC
*
45996966 -ATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGT-CATTC
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGC-TAC
*
45997005 TATCCGGGCTAAGACCCAAAGGCATTCGTGC
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGC
45997036 ACGTGGTTAT
Statistics
Matches: 63, Mismatches: 4, Indels: 7
0.85 0.05 0.09
Matches are distributed among these distances:
38 1 0.02
39 5 0.08
40 57 0.90
ACGTcount: A:0.24, C:0.26, G:0.28, T:0.22
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGCTAC
Found at i:46000727 original size:20 final size:20
Alignment explanation
Indices: 46000702--46000748 Score: 69
Period size: 20 Copynumber: 2.4 Consensus size: 20
46000692 GTTTTGATAT
46000702 ACATGAT-TGATATGATATCC
1 ACATGATATG-TATGATATCC
*
46000722 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATCC
46000742 ACATGAT
1 ACATGAT
46000749 GTATTCATAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
20 23 0.92
21 2 0.08
ACGTcount: A:0.36, C:0.13, G:0.17, T:0.34
Consensus pattern (20 bp):
ACATGATATGTATGATATCC
Found at i:46000887 original size:24 final size:24
Alignment explanation
Indices: 46000796--46000903 Score: 121
Period size: 25 Copynumber: 4.4 Consensus size: 24
46000786 AGGAAGTGGA
*
46000796 AAAAGGG-TTATGCCCCAGTTTACC
1 AAAAGGGCTT-TGCCCCAGTTTATC
* *
46000820 GAAAAGGGCTTTTGCCCCAATTTATT
1 -AAAAGGGC-TTTGCCCCAGTTTATC
46000846 AAAAGGGCTTTTGCCCCAGTTTATC
1 AAAAGGGC-TTTGCCCCAGTTTATC
*
46000871 AAAAGGGCTTTGCCCCAG-TTATT
1 AAAAGGGCTTTGCCCCAGTTTATC
46000894 AAAAGAGGCT
1 AAAAG-GGCT
46000904 AGGCCTCCAG
Statistics
Matches: 74, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
23 9 0.12
24 14 0.19
25 38 0.51
26 11 0.15
27 2 0.03
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (24 bp):
AAAAGGGCTTTGCCCCAGTTTATC
Found at i:46000914 original size:49 final size:51
Alignment explanation
Indices: 46000796--46000915 Score: 142
Period size: 49 Copynumber: 2.4 Consensus size: 51
46000786 AGGAAGTGGA
* *
46000796 AAAAGGG-TTATGCCCCAGTTTACCGAAAAGGGCTTTTGCCCCAATTTATT
1 AAAAGGGCTTAGGCCCCAGTTTACCGAAAAGGGCTTTTGCCCCAAGTTATT
** *
46000846 AAAAGGGCTTTTGCCCCAGTTTATC-AAAAGGGC-TTTGCCCC-AGTTATT
1 AAAAGGGCTTAGGCCCCAGTTTACCGAAAAGGGCTTTTGCCCCAAGTTATT
46000894 AAAAGAGGC-TAGGCCTCCAGTT
1 AAAAG-GGCTTAGGCC-CCAGTT
46000916 ATATGATAAA
Statistics
Matches: 62, Mismatches: 5, Indels: 7
0.84 0.07 0.09
Matches are distributed among these distances:
48 15 0.24
49 17 0.27
50 15 0.24
51 15 0.24
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.28
Consensus pattern (51 bp):
AAAAGGGCTTAGGCCCCAGTTTACCGAAAAGGGCTTTTGCCCCAAGTTATT
Found at i:46001142 original size:31 final size:31
Alignment explanation
Indices: 46001107--46001170 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
46001097 CGTCTACAGT
46001107 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
46001138 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
46001169 AA
1 AA
46001171 CATGAAAAGG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.38, C:0.16, G:0.23, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:46008441 original size:21 final size:20
Alignment explanation
Indices: 46008412--46008451 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
46008402 GCATCACAGT
*
46008412 AAGTTGGGCCTCAAGGGGCTG
1 AAGTCGGGCC-CAAGGGGCTG
*
46008433 AAGTCGGGCCCAATGGGCT
1 AAGTCGGGCCCAAGGGGCT
46008452 TACGGGCCCA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.20, C:0.23, G:0.40, T:0.17
Consensus pattern (20 bp):
AAGTCGGGCCCAAGGGGCTG
Found at i:46008964 original size:24 final size:24
Alignment explanation
Indices: 46008878--46008985 Score: 103
Period size: 25 Copynumber: 4.4 Consensus size: 24
46008868 AGGAAGTGCA
*
46008878 AAAAGGG-TTATGCCCCAGTTTACC
1 AAAAGGGCTT-TGCCCCAGTTTATC
* *
46008902 GAAAAGGACTTTTGCCCCAGTTTATT
1 -AAAAGGGC-TTTGCCCCAGTTTATC
*
46008928 AAAAAGGCTTTTGCCCCAGTTTATC
1 AAAAGGGC-TTTGCCCCAGTTTATC
* *
46008953 AAAAGGGCTTTGCCCTAG-TTATT
1 AAAAGGGCTTTGCCCCAGTTTATC
46008976 AAAAGAGGCT
1 AAAAG-GGCT
46008986 AGGCCTCCAG
Statistics
Matches: 71, Mismatches: 9, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
23 9 0.13
24 13 0.18
25 35 0.49
26 12 0.17
27 2 0.03
ACGTcount: A:0.30, C:0.20, G:0.20, T:0.30
Consensus pattern (24 bp):
AAAAGGGCTTTGCCCCAGTTTATC
Found at i:46008996 original size:49 final size:51
Alignment explanation
Indices: 46008877--46008997 Score: 133
Period size: 51 Copynumber: 2.4 Consensus size: 51
46008867 GAGGAAGTGC
* *
46008877 AAAAAGGGTTATGCCCCAGTTTACCGAAAAGGACTTTTGCCCCAGTTTATT
1 AAAAAGGCTTAGGCCCCAGTTTACCGAAAAGGACTTTTGCCCCAGTTTATT
** * * *
46008928 AAAAAGGCTTTTGCCCCAGTTTATC-AAAAGGGC-TTTGCCCTAG-TTATT
1 AAAAAGGCTTAGGCCCCAGTTTACCGAAAAGGACTTTTGCCCCAGTTTATT
46008976 AAAAGAGGC-TAGGCCTCCAGTT
1 AAAA-AGGCTTAGGCC-CCAGTT
46008998 ATATGATAAA
Statistics
Matches: 61, Mismatches: 7, Indels: 6
0.82 0.09 0.08
Matches are distributed among these distances:
48 13 0.21
49 19 0.31
50 7 0.11
51 22 0.36
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (51 bp):
AAAAAGGCTTAGGCCCCAGTTTACCGAAAAGGACTTTTGCCCCAGTTTATT
Found at i:46009241 original size:31 final size:31
Alignment explanation
Indices: 46009198--46009257 Score: 84
Period size: 31 Copynumber: 1.9 Consensus size: 31
46009188 TACAGTAAAG
46009198 GCTTCGGCCCAGTAATATAAAATATGAAAAT
1 GCTTCGGCCCAGTAATATAAAATATGAAAAT
* ** *
46009229 GCTTTGGCCCAGTGTTATGAAATATGAAA
1 GCTTCGGCCCAGTAATATAAAATATGAAA
46009258 CATGAAGAGG
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 25 1.00
ACGTcount: A:0.37, C:0.15, G:0.20, T:0.28
Consensus pattern (31 bp):
GCTTCGGCCCAGTAATATAAAATATGAAAAT
Found at i:46011490 original size:46 final size:46
Alignment explanation
Indices: 46011344--46011554 Score: 170
Period size: 46 Copynumber: 4.6 Consensus size: 46
46011334 CATTTGTGTA
*
46011344 CTAGTGTAAGACATGTCTGGGACATGCATCAGCCACATTATGA-G-AA-
1 CTAGTGTAAGACATGTCTGGGACATGCATCAGCCAC--GA-GACGTAAG
* * * * *
46011390 CCAGTGCAAGACCGTGTCTGGGACATGGCATC-GGCATTGAGAC-TAGAG
1 CTAGTGTAAGA-CATGTCTGGGACAT-GCATCAGCCA-CGAGACGTA-AG
* *
46011438 CCAGTGTAAGACATGTCTGGGACATGCATC-GACCTCGAGACGTAAG
1 CTAGTGTAAGACATGTCTGGGACATGCATCAG-CCACGAGACGTAAG
* *
46011484 CTAGTGTAAGACGTGTCTGGGACATGCATCAGCCACGAGATGT--G
1 CTAGTGTAAGACATGTCTGGGACATGCATCAGCCACGAGACGTAAG
*
46011528 -TCAGTGTAAGACCATGTCTGGAACATG
1 CT-AGTGTAAGA-CATGTCTGGGACATG
46011555 GCTTCGGCAC
Statistics
Matches: 136, Mismatches: 17, Indels: 25
0.76 0.10 0.14
Matches are distributed among these distances:
43 1 0.01
44 10 0.07
45 15 0.11
46 61 0.45
47 34 0.25
48 15 0.11
ACGTcount: A:0.28, C:0.21, G:0.29, T:0.22
Consensus pattern (46 bp):
CTAGTGTAAGACATGTCTGGGACATGCATCAGCCACGAGACGTAAG
Found at i:46013789 original size:23 final size:23
Alignment explanation
Indices: 46013762--46013871 Score: 85
Period size: 23 Copynumber: 4.8 Consensus size: 23
46013752 GGACTCACCA
46013762 CAGCTTGTAAGAGCTTACTGTTT
1 CAGCTTGTAAGAGCTTACTGTTT
* ** ** *
46013785 TAGCTCATTGGAGCTTACTGATT
1 CAGCTTGTAAGAGCTTACTGTTT
*
46013808 CAGCTTGTAAGAGCTTACTATTT
1 CAGCTTGTAAGAGCTTACTGTTT
** ** * *
46013831 CAGCTCATTGGAGCTTATTGATT
1 CAGCTTGTAAGAGCTTACTGTTT
* *
46013854 CAGCTCGTAAAAGCTTAC
1 CAGCTTGTAAGAGCTTAC
46013872 CATTGCTAAT
Statistics
Matches: 62, Mismatches: 25, Indels: 0
0.71 0.29 0.00
Matches are distributed among these distances:
23 62 1.00
ACGTcount: A:0.25, C:0.19, G:0.20, T:0.36
Consensus pattern (23 bp):
CAGCTTGTAAGAGCTTACTGTTT
Found at i:46013836 original size:46 final size:46
Alignment explanation
Indices: 46013762--46013936 Score: 189
Period size: 46 Copynumber: 3.9 Consensus size: 46
46013752 GGACTCACCA
* * *
46013762 CAGCTTGTAAGAGCTTACTGTTTTAGCTCATTGGAGCTTACTGATT
1 CAGCTCGTAAGAGCTTACTATTTCAGCTCATTGGAGCTTACTGATT
* *
46013808 CAGCTTGTAAGAGCTTACTATTTCAGCTCATTGGAGCTTATTGATT
1 CAGCTCGTAAGAGCTTACTATTTCAGCTCATTGGAGCTTACTGATT
* * * * *
46013854 CAGCTCGTAAAAGCTTACCA-TT--GCTAATTTGAGCTTACCGATT
1 CAGCTCGTAAGAGCTTACTATTTCAGCTCATTGGAGCTTACTGATT
* * *
46013897 CAGCTCGAAAGAGCTTA-T-TGTTCAGCTCAATAGAGCTTAC
1 CAGCTCGTAAGAGCTTACTAT-TTCAGCTCATTGGAGCTTAC
46013937 CATTTCAGTT
Statistics
Matches: 109, Mismatches: 16, Indels: 9
0.81 0.12 0.07
Matches are distributed among these distances:
43 34 0.31
45 15 0.14
46 60 0.55
ACGTcount: A:0.26, C:0.20, G:0.19, T:0.35
Consensus pattern (46 bp):
CAGCTCGTAAGAGCTTACTATTTCAGCTCATTGGAGCTTACTGATT
Found at i:46019159 original size:80 final size:80
Alignment explanation
Indices: 46019075--46019223 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
46019065 TATGGTAACC
* * * *
46019075 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
46019139 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
46019155 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
46019220 CCGG
66 CCGG
46019224 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:46019165 original size:40 final size:38
Alignment explanation
Indices: 46019116--46019223 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
46019106 ATCACGATTT
*
46019116 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
46019156 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
46019196 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
46019224 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:46027249 original size:80 final size:80
Alignment explanation
Indices: 46027165--46027313 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
46027155 TATGGTAACC
* * * *
46027165 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
46027229 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
46027245 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
46027310 CCGG
66 CCGG
46027314 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:46027255 original size:40 final size:38
Alignment explanation
Indices: 46027206--46027313 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
46027196 ATCACGATTT
*
46027206 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
46027246 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
46027286 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
46027314 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:46029272 original size:46 final size:46
Alignment explanation
Indices: 46029205--46029382 Score: 191
Period size: 46 Copynumber: 3.8 Consensus size: 46
46029195 TGTAACCCGC
* *
46029205 CCATAAGTGAACTCGGACTCAACTCAATGAGCTTGGGTGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTTGGATGTTCGCAT
* * * *
46029251 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAG-TT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTTGGATG-TTCGCAT
* *** **
46029297 ACATCTCTCGAACTCGGACTCAACTCAACGAG-TTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTT-GGATGTTCGCAT
46029344 CCATAAGTGAACTCGGACTCAACTCAACGAG-TTCGGATG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTT-GGATG
46029383 CCCAAATATC
Statistics
Matches: 106, Mismatches: 22, Indels: 8
0.78 0.16 0.06
Matches are distributed among these distances:
46 73 0.69
47 33 0.31
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTTGGATGTTCGCAT
Found at i:46029341 original size:93 final size:93
Alignment explanation
Indices: 46029213--46029384 Score: 283
Period size: 93 Copynumber: 1.8 Consensus size: 93
46029203 GCCCATAAGT
* ***
46029213 GAACTCGGACTCAACTCAATGAGCTTGGGTGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTTGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
46029278 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
46029306 GAACTCGGACTCAACTCAACGAG-TTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAGCTT-GGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
46029370 ACGAGTTCGGATGCC
65 ACGAGCTCGGATGCC
46029385 CAAATATCCT
Statistics
Matches: 73, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
92 2 0.03
93 71 0.97
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTTGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:46032806 original size:29 final size:29
Alignment explanation
Indices: 46032767--46032846 Score: 108
Period size: 29 Copynumber: 2.7 Consensus size: 29
46032757 CTTAATAATC
*
46032767 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
46032797 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
46032826 AGCCCGCACACTTAGTGCCAT
1 AACCCGCACACTTAGTGCCAT
46032847 TCTCTCAACC
Statistics
Matches: 45, Mismatches: 4, Indels: 3
0.87 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 39 0.87
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.25
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:46044580 original size:39 final size:40
Alignment explanation
Indices: 46044522--46044622 Score: 132
Period size: 39 Copynumber: 2.5 Consensus size: 40
46044512 AAATTGAATG
* *
46044522 ATATCCGGGCTAAGCCCCGAAGACAATTATGCT-GAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * * *
46044561 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
46044601 ATATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
46044623 GCATTCGTGC
Statistics
Matches: 53, Mismatches: 8, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
39 29 0.55
40 24 0.45
ACGTcount: A:0.31, C:0.23, G:0.25, T:0.22
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:46044615 original size:40 final size:40
Alignment explanation
Indices: 46044522--46044672 Score: 180
Period size: 40 Copynumber: 3.8 Consensus size: 40
46044512 AAATTGAATG
* * * * *
46044522 ATATCCGGGCTAAGCCCCGAAGACAATTATGCT-GAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
46044561 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
46044601 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTAGTT
* *
46044641 AAATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
46044673 AAATCGTGAT
Statistics
Matches: 96, Mismatches: 13, Indels: 5
0.84 0.11 0.04
Matches are distributed among these distances:
39 32 0.33
40 62 0.65
41 2 0.02
ACGTcount: A:0.28, C:0.23, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
Found at i:46044687 original size:40 final size:38
Alignment explanation
Indices: 46044518--46044689 Score: 161
Period size: 40 Copynumber: 4.4 Consensus size: 38
46044508 TGAGAAATTG
* *
46044518 AATG-ATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-A
1 AATGTATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCA
* * *
46044557 AAT-TATATCCGGGTTAAGACCCGAAGGCAATTGTGCT
1 AATGTATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
* *
46044594 AGTAGCTATATCCGGGCTAAGACCCGAAGGCATTCGTGCA
1 AAT-G-TATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
* *
46044634 AGTTGTTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCA
1 A-ATG-TATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
46044674 AATCGTGATATCCGGG
1 AAT-GT-ATATCCGGG
46044690 TTAATCCCGT
Statistics
Matches: 109, Mismatches: 16, Indels: 15
0.78 0.11 0.11
Matches are distributed among these distances:
36 2 0.02
37 4 0.04
38 2 0.02
39 26 0.24
40 74 0.68
41 1 0.01
ACGTcount: A:0.29, C:0.22, G:0.26, T:0.23
Consensus pattern (38 bp):
AATGTATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
Found at i:46057162 original size:38 final size:40
Alignment explanation
Indices: 46057111--46057219 Score: 143
Period size: 38 Copynumber: 2.8 Consensus size: 40
46057101 CTGGAAATTA
* *
46057111 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAG-T-GGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTTAGGC
**
46057149 TATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTTAGGC
*
46057189 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
46057220 ACGTGATTAT
Statistics
Matches: 62, Mismatches: 5, Indels: 6
0.85 0.07 0.08
Matches are distributed among these distances:
37 3 0.05
38 28 0.45
39 1 0.02
40 28 0.45
41 2 0.03
ACGTcount: A:0.23, C:0.24, G:0.29, T:0.24
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTTAGGC
Found at i:46057233 original size:40 final size:40
Alignment explanation
Indices: 46057071--46057235 Score: 162
Period size: 40 Copynumber: 4.2 Consensus size: 40
46057061 AAATTGAATG
* * **
46057071 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTG-GAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGTGATT
* * *
46057110 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTG--G
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGATT
* *
46057148 CTATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTGATT
* *
46057188 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGA-GTGATT
46057228 ATATCCGG
1 ATATCCGG
46057236 TTATATTCCG
Statistics
Matches: 104, Mismatches: 15, Indels: 13
0.79 0.11 0.10
Matches are distributed among these distances:
37 3 0.03
38 29 0.28
39 14 0.13
40 56 0.54
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGATT
Found at i:46065154 original size:40 final size:40
Alignment explanation
Indices: 46065069--46065219 Score: 134
Period size: 40 Copynumber: 3.8 Consensus size: 40
46065059 AATTGAATGA
* * *
46065069 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGATA-TAC
* * *
46065109 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAG-TGGCTAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGAT--ATAC
*
46065150 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGATATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGATATAC
*
46065189 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
46065220 ACGTGATTAT
Statistics
Matches: 91, Mismatches: 11, Indels: 18
0.76 0.09 0.15
Matches are distributed among these distances:
39 5 0.05
40 82 0.90
41 4 0.04
ACGTcount: A:0.27, C:0.23, G:0.26, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGATATAC
Found at i:46065233 original size:40 final size:40
Alignment explanation
Indices: 46065105--46065235 Score: 158
Period size: 40 Copynumber: 3.3 Consensus size: 40
46065095 TATGCTGGAA
* * *
46065105 ATTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
** * *
46065145 GCTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGAT-
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG-TG
*
46065185 ATTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTG
46065225 ATTATATCCGG
1 ATTATATCCGG
46065236 TTATATTCCG
Statistics
Matches: 75, Mismatches: 13, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
39 2 0.03
40 72 0.96
41 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
Found at i:46068855 original size:45 final size:46
Alignment explanation
Indices: 46068779--46068960 Score: 190
Period size: 46 Copynumber: 3.9 Consensus size: 46
46068769 GAGTCATGGT
**
46068779 TGGTAAGCTCCTCCTGAGCTGATGAACAGTAAGCTC-TACTGAGCTAAAA
1 TGGTAAGCTCC-AATGAGCTGA--AACAGTAAGCTCTTAC-GAGCTAAAA
* * * * *
46068828 TGGTAAGCTCTATTAAGCTG-AACAGTAAGCTCTTTCGAGCT-GAA
1 TGGTAAGCTCCAATGAGCTGAAACAGTAAGCTCTTACGAGCTAAAA
* * *
46068872 TCGGTAAGCTCCAATGAGCTGAAATAGTAAGCTCTTGCGAGCTAAAT
1 T-GGTAAGCTCCAATGAGCTGAAACAGTAAGCTCTTACGAGCTAAAA
* *
46068919 TTGTAAGCTCCAATGAGCTGAAATAGTAAGCTCTTACGAGCT
1 TGGTAAGCTCCAATGAGCTGAAACAGTAAGCTCTTACGAGCT
46068961 GTGGTGAGTC
Statistics
Matches: 114, Mismatches: 15, Indels: 11
0.81 0.11 0.08
Matches are distributed among these distances:
44 3 0.03
45 33 0.29
46 60 0.53
47 2 0.02
48 6 0.05
49 10 0.09
ACGTcount: A:0.31, C:0.20, G:0.23, T:0.27
Consensus pattern (46 bp):
TGGTAAGCTCCAATGAGCTGAAACAGTAAGCTCTTACGAGCTAAAA
Found at i:46068961 original size:23 final size:23
Alignment explanation
Indices: 46068806--46068961 Score: 108
Period size: 23 Copynumber: 6.8 Consensus size: 23
46068796 GCTGATGAAC
*
46068806 AGTAAGCTC-TACTGAGCTAAAAT
1 AGTAAGCTCTTAC-GAGCTGAAAT
* *
46068829 GGTAAGCTCTATTA--AGCTG-AAC
1 AGTAAGCTC--TTACGAGCTGAAAT
*
46068851 AGTAAGCTCTTTCGAGCTG-AAT
1 AGTAAGCTCTTACGAGCTGAAAT
* ** *
46068873 CGGTAAGCTCCAATGAGCTGAAAT
1 -AGTAAGCTCTTACGAGCTGAAAT
*
46068897 AGTAAGCTCTTGCGAGCT-AAATT
1 AGTAAGCTCTTACGAGCTGAAA-T
* ** *
46068920 TGTAAGCTCCAATGAGCTGAAAT
1 AGTAAGCTCTTACGAGCTGAAAT
46068943 AGTAAGCTCTTACGAGCTG
1 AGTAAGCTCTTACGAGCTG
46068962 TGGTGAGTCC
Statistics
Matches: 99, Mismatches: 25, Indels: 18
0.70 0.18 0.13
Matches are distributed among these distances:
20 2 0.02
22 20 0.20
23 69 0.70
24 6 0.06
26 2 0.02
ACGTcount: A:0.32, C:0.19, G:0.22, T:0.27
Consensus pattern (23 bp):
AGTAAGCTCTTACGAGCTGAAAT
Found at i:46085043 original size:28 final size:28
Alignment explanation
Indices: 46084974--46085074 Score: 105
Period size: 28 Copynumber: 3.5 Consensus size: 28
46084964 ATAGTGAATC
*
46084974 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
*
46085003 CGCACACTAAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
46085031 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
46085061 CGCACACTTAGTGC
1 CGCACACTTAGTGC
46085075 CATACCCTTC
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
27 4 0.06
28 22 0.35
29 17 0.27
30 19 0.31
ACGTcount: A:0.31, C:0.27, G:0.14, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:46085123 original size:29 final size:29
Alignment explanation
Indices: 46085091--46085163 Score: 101
Period size: 29 Copynumber: 2.5 Consensus size: 29
46085081 CTTCGAGCTC
*
46085091 GCACACCCAGTGCCGTATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
46085120 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
46085149 GCACACTTAGTGCCA
1 GCACACCCAGTGCCA
46085164 ATCTCGTCAC
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (29 bp):
GCACACCCAGTGCCATATATTTCCAGCAT
Found at i:46095550 original size:40 final size:40
Alignment explanation
Indices: 46095505--46095671 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
46095495 CGGAATATAA
46095505 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * *
46095545 CCGGATAGAAT-ACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
46095584 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
46095624 CCGGATATAATTTCCAGCATAATTGTCTTCGGGAT-TTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGG-TCTTAGC
46095664 CCGGATAT
1 CCGGATAT
46095672 CATTCAATTT
Statistics
Matches: 105, Mismatches: 19, Indels: 6
0.81 0.15 0.05
Matches are distributed among these distances:
38 1 0.01
39 32 0.30
40 71 0.68
41 1 0.01
ACGTcount: A:0.24, C:0.26, G:0.23, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:46095569 original size:39 final size:40
Alignment explanation
Indices: 46095521--46095630 Score: 136
Period size: 39 Copynumber: 2.8 Consensus size: 40
46095511 ATAATCACGT
* *
46095521 GCACAAATGCCTTCGGGTCTTAGCCCGGATAG-A-ATACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAGTAGACACTA
*
46095560 GCACGAATGCCTTCGGGTCTTAGCCCGGAT-GTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAGTAGACACTA
*
46095600 GCACAATTGCCTTCGGGTCTTAACCCGGATA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATA
46095631 TAATTTCCAG
Statistics
Matches: 62, Mismatches: 5, Indels: 6
0.85 0.07 0.08
Matches are distributed among these distances:
38 1 0.02
39 32 0.52
40 29 0.47
ACGTcount: A:0.23, C:0.29, G:0.25, T:0.24
Consensus pattern (40 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATAGTAGACACTA
Found at i:46103534 original size:40 final size:40
Alignment explanation
Indices: 46103489--46103656 Score: 162
Period size: 40 Copynumber: 4.2 Consensus size: 40
46103479 CGGAATATAA
46103489 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * *
46103529 CCGGATAGAAT-ATCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCA-CTAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
46103569 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
46103609 CCGGATATAATTTCCAGCATAATTGTCTTCGGGAT-TTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGG-TCTTAGC
46103649 CCGGATAT
1 CCGGATAT
46103657 CATTCAATTT
Statistics
Matches: 105, Mismatches: 19, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
39 2 0.02
40 101 0.96
41 2 0.02
ACGTcount: A:0.24, C:0.26, G:0.23, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:46103639 original size:80 final size:80
Alignment explanation
Indices: 46103505--46103654 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 80
46103495 ATAATCACGT
*
46103505 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATATCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATATCTCGCACGAATGCCTTCGGGAT-TTAGC
46103569 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * * *
46103585 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATATCTC-GCACGAA-TGCCTTCGGGATTTAG
46103648 CCCGGAT
64 CCCGGAT
46103655 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
79 3 0.05
80 57 0.93
81 1 0.02
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATATCTCGCACGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Found at i:46109569 original size:44 final size:44
Alignment explanation
Indices: 46109506--46109594 Score: 169
Period size: 44 Copynumber: 2.0 Consensus size: 44
46109496 TTCTTTTCAC
46109506 ATGCAATCTATCCCATATATGAGCTTACGAGGTCCAAAAAATTA
1 ATGCAATCTATCCCATATATGAGCTTACGAGGTCCAAAAAATTA
*
46109550 ATGCAATCTATCCCATATATGAGCTTACGAGGTCCAAAACATTA
1 ATGCAATCTATCCCATATATGAGCTTACGAGGTCCAAAAAATTA
46109594 A
1 A
46109595 AACCCTATAC
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 44 1.00
ACGTcount: A:0.38, C:0.21, G:0.13, T:0.27
Consensus pattern (44 bp):
ATGCAATCTATCCCATATATGAGCTTACGAGGTCCAAAAAATTA
Found at i:46110673 original size:38 final size:38
Alignment explanation
Indices: 46110625--46110728 Score: 129
Period size: 38 Copynumber: 2.7 Consensus size: 38
46110615 GGCACGAAGG
* * * *
46110625 CTCGAATATAATACCAGCACTAGGCCTGCCGG-ATTTAT
1 CTCGGATATAATACCAGCACGAAGCCTG-CGGAATTTAA
46110663 CTCGGATATAATACCAGCACGAAGCCTGCGGAATTTAA
1 CTCGGATATAATACCAGCACGAAGCCTGCGGAATTTAA
* **
46110701 CCCGGATATTTTACCAGCACGAAGCCTG
1 CTCGGATATAATACCAGCACGAAGCCTG
46110729 TGGGTCTTTA
Statistics
Matches: 58, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
37 3 0.05
38 55 0.95
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.23
Consensus pattern (38 bp):
CTCGGATATAATACCAGCACGAAGCCTGCGGAATTTAA
Found at i:46125536 original size:41 final size:41
Alignment explanation
Indices: 46125409--46125588 Score: 152
Period size: 41 Copynumber: 4.4 Consensus size: 41
46125399 ATACTTGAAT
*
46125409 TCTCGCACACTAAGT-GCTAAAACATAGCCGAAGCTATTTTAA
1 TCTCGCACACTAAGTGGCT--ATCATAGCCGAAGCTATTTTAA
* * ** * *
46125451 TCACACACACTAAGTACCTCTCATAGCTGAAGCTATTTTAA
1 TCTCGCACACTAAGTGGCTATCATAGCCGAAGCTATTTTAA
* * **
46125492 TCTCGCACACTAAGTGGCTTTCATAGCCGAAGCTATCTCGA
1 TCTCGCACACTAAGTGGCTATCATAGCCGAAGCTATTTTAA
* * * * *
46125533 TCTCGCACTCTAAGTGCCACAT-ATAGTCAAAGCTATTTTGAA
1 TCTCGCACACTAAGTGGC-TATCATAGCCGAAGCTATTTT-AA
46125575 --TCGCACACTAAGTG
1 TCTCGCACACTAAGTG
46125589 CCATATACAG
Statistics
Matches: 110, Mismatches: 25, Indels: 8
0.77 0.17 0.06
Matches are distributed among these distances:
40 13 0.12
41 80 0.73
42 15 0.14
43 2 0.02
ACGTcount: A:0.31, C:0.26, G:0.15, T:0.28
Consensus pattern (41 bp):
TCTCGCACACTAAGTGGCTATCATAGCCGAAGCTATTTTAA
Found at i:46125547 original size:82 final size:84
Alignment explanation
Indices: 46125403--46125588 Score: 188
Period size: 82 Copynumber: 2.2 Consensus size: 84
46125393 TGTTGAATAC
* *
46125403 TTGAATTCTCGCACACTAAGT-GCTAAAACATAGCCGAAGCTATTTTAATCACACACACTAAGTA
1 TTGAA-TCTCGCACACTAAGTGGCT-AAACATAGCCGAAGCTATCTCAATCACACACACTAAGTA
* *
46125467 CCTC-TCATAG-CTGAAGCTATT
64 CCACAT-ATAGTC-AAAGCTATT
** * * * * *
46125488 TT-AATCTCGCACACTAAGTGGCT-TTCATAGCCGAAGCTATCTCGATCTCGCACTCTAAGTGCC
1 TTGAATCTCGCACACTAAGTGGCTAAACATAGCCGAAGCTATCTCAATCACACACACTAAGTACC
46125551 ACATATAGTCAAAGCTATT
66 ACATATAGTCAAAGCTATT
46125570 TTGAA--TCGCACACTAAGTG
1 TTGAATCTCGCACACTAAGTG
46125589 CCATATACAG
Statistics
Matches: 86, Mismatches: 11, Indels: 12
0.79 0.10 0.11
Matches are distributed among these distances:
81 14 0.16
82 46 0.53
83 19 0.22
84 5 0.06
85 2 0.02
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.28
Consensus pattern (84 bp):
TTGAATCTCGCACACTAAGTGGCTAAACATAGCCGAAGCTATCTCAATCACACACACTAAGTACC
ACATATAGTCAAAGCTATT
Found at i:46129877 original size:39 final size:39
Alignment explanation
Indices: 46129834--46130042 Score: 166
Period size: 39 Copynumber: 5.4 Consensus size: 39
46129824 ATTCACTTTT
* * *
46129834 AAGCATACATCATATTACACATACAATCACCTAACATCC
1 AAGCATACATCACAATACACATACAATCACATAACATCC
* * * **
46129873 AAGCATATATCACAATACTCATATAATCACATAACATTT
1 AAGCATACATCACAATACACATACAATCACATAACATCC
* * * * * *
46129912 AAGCGTATATCACAATACTCGTATAATCACATAACATTC
1 AAGCATACATCACAATACACATACAATCACATAACATCC
* * * * * * **
46129951 AAGCATATATCACAATATACATATAATCTCACAATATTT
1 AAGCATACATCACAATACACATACAATCACATAACATCC
* * * * *
46129990 AAGCATATATCACAATACTCGTATAATCACATAACATTC
1 AAGCATACATCACAATACACATACAATCACATAACATCC
*
46130029 AAGCATATATCACA
1 AAGCATACATCACA
46130043 TTATAATCTC
Statistics
Matches: 144, Mismatches: 26, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
39 144 1.00
ACGTcount: A:0.44, C:0.23, G:0.04, T:0.28
Consensus pattern (39 bp):
AAGCATACATCACAATACACATACAATCACATAACATCC
Found at i:46129960 original size:78 final size:77
Alignment explanation
Indices: 46129831--46130081 Score: 332
Period size: 78 Copynumber: 3.3 Consensus size: 77
46129821 CATATTCACT
* * * * * * * *
46129831 TTTAAGCATACATCATATTACACATACAATCACCTAACATCCAAGCATATATCACAATACTCATA
1 TTTAAGCATATATCACAATACTCGTATAATCACATAACATTCAAGCATATATCACAATA-TCATA
* *
46129896 TAATCACATAACA
65 TAATCTCATAATA
*
46129909 TTTAAGCGTATATCACAATACTCGTATAATCACATAACATTCAAGCATATATCACAATATACATA
1 TTTAAGCATATATCACAATACTCGTATAATCACATAACATTCAAGCATATATCACAATAT-CATA
*
46129974 TAATCTCACAATA
65 TAATCTCATAATA
46129987 TTTAAGCATATATCACAATACTCGTATAATCACATAACATTCAAGCATATATCAC---AT--TAT
1 TTTAAGCATATATCACAATACTCGTATAATCACATAACATTCAAGCATATATCACAATATCATAT
46130047 AATCTCATAATA
66 AATCTCATAATA
*
46130059 CTTAAGCATATATCACAATACTC
1 TTTAAGCATATATCACAATACTC
46130082 AAAACATCTT
Statistics
Matches: 157, Mismatches: 15, Indels: 8
0.87 0.08 0.04
Matches are distributed among these distances:
72 36 0.23
75 2 0.01
77 1 0.01
78 118 0.75
ACGTcount: A:0.43, C:0.22, G:0.04, T:0.30
Consensus pattern (77 bp):
TTTAAGCATATATCACAATACTCGTATAATCACATAACATTCAAGCATATATCACAATATCATAT
AATCTCATAATA
Found at i:46130048 original size:33 final size:33
Alignment explanation
Indices: 46130011--46130075 Score: 96
Period size: 33 Copynumber: 2.0 Consensus size: 33
46130001 ACAATACTCG
46130011 TATAATCACATAACA-TTCAAGCATATATCACAT
1 TATAATCACATAACACTT-AAGCATATATCACAT
* *
46130044 TATAATCTCATAATACTTAAGCATATATCACA
1 TATAATCACATAACACTTAAGCATATATCACA
46130076 ATACTCAAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
33 27 0.93
34 2 0.07
ACGTcount: A:0.45, C:0.20, G:0.03, T:0.32
Consensus pattern (33 bp):
TATAATCACATAACACTTAAGCATATATCACAT
Found at i:46132794 original size:46 final size:44
Alignment explanation
Indices: 46132754--46132919 Score: 154
Period size: 46 Copynumber: 3.6 Consensus size: 44
46132744 TCCGAAGTCG
*
46132754 TTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCA
1 TTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA--TCCGAGCTCA
* *** * * *
46132800 TTGAGTTGAGTCCGGGTTCGAGAGATGTAACTAG-GCATCCGAGCTCG
1 TTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAATCCGAGCTCA
* * *
46132847 TTGAGTTGAGTCCAAGTTCACTTATGGATGCAAACACCCGAGCTCA
1 TTGAGTTGAGTCCGAGTTCACTTATGGATGC-GA-ATCCGAGCTCA
46132893 TTGAGTTGAGTCCGAGTTCACTTATGG
1 TTGAGTTGAGTCCGAGTTCACTTATGG
46132920 GCGGGTTACA
Statistics
Matches: 94, Mismatches: 19, Indels: 14
0.74 0.15 0.11
Matches are distributed among these distances:
43 1 0.01
44 1 0.01
45 1 0.01
46 57 0.61
47 29 0.31
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.29
Consensus pattern (44 bp):
TTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATCCGAGCTCA
Found at i:46132900 original size:93 final size:93
Alignment explanation
Indices: 46132741--46132911 Score: 263
Period size: 93 Copynumber: 1.8 Consensus size: 93
46132731 GGATGGTTGA
* * ***
46132741 GCATCCGAAGTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCATTGAGT
1 GCATCCGAAGTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCAAACACCCGAACTCATTGAGT
*
46132806 TGAGTCCGGGTTCGAGAGATGTAACTAG
66 TGAGTCCGAGTTCGAGAGATGTAACTAG
*
46132834 GCATCCG-AGCTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCAAACACCCGAGCTCATTGAG
1 GCATCCGAAG-TCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCAAACACCCGAACTCATTGAG
46132898 TTGAGTCCGAGTTC
65 TTGAGTCCGAGTTC
46132912 ACTTATGGGC
Statistics
Matches: 70, Mismatches: 7, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
92 2 0.03
93 68 0.97
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.27
Consensus pattern (93 bp):
GCATCCGAAGTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCAAACACCCGAACTCATTGAGT
TGAGTCCGAGTTCGAGAGATGTAACTAG
Found at i:46135009 original size:15 final size:15
Alignment explanation
Indices: 46134989--46135043 Score: 85
Period size: 15 Copynumber: 3.7 Consensus size: 15
46134979 TATCTTGGGA
46134989 TTCTTTATTCTGGAT
1 TTCTTTATTCTGGAT
46135004 TTCTTTATTCTGGAT
1 TTCTTTATTCTGGAT
*
46135019 TTCTCTA-TCTTGGAT
1 TTCTTTATTC-TGGAT
46135034 TTCTTTATTC
1 TTCTTTATTC
46135044 GGTTTCCTTG
Statistics
Matches: 36, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
14 2 0.06
15 32 0.89
16 2 0.06
ACGTcount: A:0.13, C:0.16, G:0.11, T:0.60
Consensus pattern (15 bp):
TTCTTTATTCTGGAT
Found at i:46137819 original size:27 final size:28
Alignment explanation
Indices: 46137762--46137831 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
46137752 AAATTTGTAC
**
46137762 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
*
46137790 AGCACTATGTGTGCG-AGCTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
46137817 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
46137832 GACTTATTAT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 24 0.63
28 14 0.37
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAAGCTGATTATAT
Found at i:46137840 original size:27 final size:27
Alignment explanation
Indices: 46137762--46137843 Score: 103
Period size: 27 Copynumber: 3.0 Consensus size: 27
46137752 AAATTTGTAC
* *
46137762 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGGACTT-ATTATAT
* *
46137790 AGCACTATGTGTGC-GAGCTGATTATAT
1 AGCACTAAGTGTGCGGA-CTTATTATAT
46137817 AGCACTAAGTGTGCGGACTTATTATAT
1 AGCACTAAGTGTGCGGACTTATTATAT
46137844 GCTTTTGCAT
Statistics
Matches: 46, Mismatches: 6, Indels: 5
0.81 0.11 0.09
Matches are distributed among these distances:
27 30 0.65
28 16 0.35
ACGTcount: A:0.29, C:0.13, G:0.23, T:0.34
Consensus pattern (27 bp):
AGCACTAAGTGTGCGGACTTATTATAT
Found at i:46145739 original size:27 final size:28
Alignment explanation
Indices: 46145682--46145751 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
46145672 AAATTTGTAC
**
46145682 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
*
46145710 AGCACTATGTGTGCG-AGCTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
46145737 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
46145752 GACTTATTAT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 24 0.63
28 14 0.37
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAAGCTGATTATAT
Found at i:46145760 original size:27 final size:27
Alignment explanation
Indices: 46145682--46145763 Score: 103
Period size: 27 Copynumber: 3.0 Consensus size: 27
46145672 AAATTTGTAC
* *
46145682 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGGACTT-ATTATAT
* *
46145710 AGCACTATGTGTGC-GAGCTGATTATAT
1 AGCACTAAGTGTGCGGA-CTTATTATAT
46145737 AGCACTAAGTGTGCGGACTTATTATAT
1 AGCACTAAGTGTGCGGACTTATTATAT
46145764 GCTTTTGCAT
Statistics
Matches: 46, Mismatches: 6, Indels: 5
0.81 0.11 0.09
Matches are distributed among these distances:
27 30 0.65
28 16 0.35
ACGTcount: A:0.29, C:0.13, G:0.23, T:0.34
Consensus pattern (27 bp):
AGCACTAAGTGTGCGGACTTATTATAT
Found at i:46148434 original size:46 final size:46
Alignment explanation
Indices: 46148384--46148547 Score: 190
Period size: 46 Copynumber: 3.8 Consensus size: 46
46148374 TGGTTGAGCA
*
46148384 TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
46148430 TCCGAACTCGTTGAGTTGAGTCTGAGTT--C-----GA---GAA-A
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
*
46148465 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
*
46148511 -CCTGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
46148548 GCGGGTTACA
Statistics
Matches: 102, Mismatches: 4, Indels: 24
0.78 0.03 0.18
Matches are distributed among these distances:
35 26 0.25
36 3 0.03
37 1 0.01
39 2 0.02
42 2 0.02
44 1 0.01
45 5 0.05
46 62 0.61
ACGTcount: A:0.21, C:0.19, G:0.29, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:46148521 original size:81 final size:81
Alignment explanation
Indices: 46148383--46148539 Score: 262
Period size: 81 Copynumber: 1.9 Consensus size: 81
46148373 ATGGTTGAGC
*
46148383 ATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGTTG
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGTTG
*
46148448 AGTCTGAGTTCGAGAA
66 AGTCCGAGTTCGAGAA
* *
46148464 ATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG-CCTGAGCTCGTTGAGTT
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCC-GAACTCGTTGAGTT
46148528 GAGTCCGAGTTC
65 GAGTCCGAGTTC
46148540 ACTTATGGGC
Statistics
Matches: 71, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
80 2 0.03
81 69 0.97
ACGTcount: A:0.21, C:0.19, G:0.29, T:0.31
Consensus pattern (81 bp):
ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGTTG
AGTCCGAGTTCGAGAA
Found at i:46150363 original size:40 final size:39
Alignment explanation
Indices: 46150287--46150383 Score: 115
Period size: 40 Copynumber: 2.4 Consensus size: 39
46150277 AGGAATTGTG
* * *
46150287 TCCGGGCTTAAAGACCCGTAGGCTATATGCTGGAATGTTA
1 TCCGGGC-TAAAGACCCGCAAGCTATATGCTAGAATGTTA
*
46150327 TCCGGGCGTAAAGACCCGCAAGCT-TCGTGCTAGAATGTTA
1 TCCGGGC-TAAAGACCCGCAAGCTAT-ATGCTAGAATGTTA
*
46150367 TCCGGGCTAGAGACCCG
1 TCCGGGCTAAAGACCCG
46150384 TAGGCTACAA
Statistics
Matches: 50, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
39 10 0.20
40 40 0.80
ACGTcount: A:0.24, C:0.25, G:0.29, T:0.23
Consensus pattern (39 bp):
TCCGGGCTAAAGACCCGCAAGCTATATGCTAGAATGTTA
Found at i:46161069 original size:26 final size:26
Alignment explanation
Indices: 46161033--46161084 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
46161023 TTTGGCCGTA
*
46161033 AGGGCAAATTGAGTCCGAGGTTCATC
1 AGGGAAAATTGAGTCCGAGGTTCATC
46161059 AGGGAAAATTGAGTCCGAGGTTCATC
1 AGGGAAAATTGAGTCCGAGGTTCATC
46161085 CGGCCATATG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.17, G:0.31, T:0.23
Consensus pattern (26 bp):
AGGGAAAATTGAGTCCGAGGTTCATC
Found at i:46170975 original size:36 final size:37
Alignment explanation
Indices: 46170872--46170978 Score: 173
Period size: 36 Copynumber: 2.9 Consensus size: 37
46170862 AGCTCAGACG
* *
46170872 AAATCTCCACACGAAGTTATCGGGTCTTA-CCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
46170908 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
46170945 TAAT-TCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
46170979 ATATATTTCC
Statistics
Matches: 67, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
36 57 0.85
37 10 0.15
ACGTcount: A:0.27, C:0.30, G:0.20, T:0.23
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:46171179 original size:48 final size:48
Alignment explanation
Indices: 46171125--46171260 Score: 236
Period size: 48 Copynumber: 2.8 Consensus size: 48
46171115 GCACATCGCC
46171125 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
46171173 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
* *
46171221 TACATATTTCACATTAGCCATTCGGCCTTATCACACATAT
1 TACATATTTCACACTAGCCATTCGGCTTTA-C-CACATAT
46171261 GCATGTTCAC
Statistics
Matches: 84, Mismatches: 2, Indels: 2
0.95 0.02 0.02
Matches are distributed among these distances:
48 76 0.90
49 1 0.01
50 7 0.08
ACGTcount: A:0.31, C:0.29, G:0.07, T:0.34
Consensus pattern (48 bp):
TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:46171348 original size:22 final size:22
Alignment explanation
Indices: 46171322--46171393 Score: 58
Period size: 22 Copynumber: 3.1 Consensus size: 22
46171312 GTTCACATTC
46171322 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* * *
46171344 ATCACATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
46171368 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
46171391 ATC
1 ATC
46171394 TCATATATAC
Statistics
Matches: 37, Mismatches: 6, Indels: 14
0.65 0.11 0.25
Matches are distributed among these distances:
22 13 0.35
23 7 0.19
24 7 0.19
25 10 0.27
ACGTcount: A:0.24, C:0.29, G:0.14, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:46171401 original size:47 final size:47
Alignment explanation
Indices: 46171229--46171393 Score: 303
Period size: 47 Copynumber: 3.5 Consensus size: 47
46171219 CATACATATT
*
46171229 TCACATTAGCCATTCGGCCTTATCACACATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCA
*
46171276 TCACATTGGCCATTCGGCCTTAACACACATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCA
*
46171323 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCA
46171370 TCACATTGGCCATTCGGCCTTATC
1 TCACATTGGCCATTCGGCCTTATC
46171394 TCATATATAC
Statistics
Matches: 114, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
47 114 1.00
ACGTcount: A:0.25, C:0.30, G:0.13, T:0.32
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCA
Found at i:46177040 original size:40 final size:40
Alignment explanation
Indices: 46176995--46177161 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
46176985 CGGAATATAA
46176995 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
46177035 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
46177075 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
46177115 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
46177154 CCGGATAT
1 CCGGATAT
46177162 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:46183683 original size:23 final size:24
Alignment explanation
Indices: 46183653--46183702 Score: 93
Period size: 23 Copynumber: 2.1 Consensus size: 24
46183643 ATGTCTGCAT
46183653 TGTGGCAAATGGCATTC-GGGAGC
1 TGTGGCAAATGGCATTCGGGGAGC
46183676 TGTGGCAAATGGCATTCGGGGAGC
1 TGTGGCAAATGGCATTCGGGGAGC
46183700 TGT
1 TGT
46183703 TGGTTCCGTG
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
23 17 0.65
24 9 0.35
ACGTcount: A:0.20, C:0.16, G:0.40, T:0.24
Consensus pattern (24 bp):
TGTGGCAAATGGCATTCGGGGAGC
Found at i:46187805 original size:18 final size:18
Alignment explanation
Indices: 46187760--46187797 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
46187750 CGTACATGAG
* *
46187760 AGAAACAAAAACAAAGAA
1 AGAAAAAAAAAAAAAGAA
46187778 AGAAAAAAAAAAAAAGAA
1 AGAAAAAAAAAAAAAGAA
46187796 AG
1 AG
46187798 GAAGAAAAGT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.82, C:0.05, G:0.13, T:0.00
Consensus pattern (18 bp):
AGAAAAAAAAAAAAAGAA
Found at i:46201531 original size:29 final size:29
Alignment explanation
Indices: 46201492--46201571 Score: 108
Period size: 29 Copynumber: 2.7 Consensus size: 29
46201482 CTTAATAATC
*
46201492 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
46201522 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
46201551 AGCCCGCACACTTAGTGCCAT
1 AACCCGCACACTTAGTGCCAT
46201572 TCTCTCAACC
Statistics
Matches: 45, Mismatches: 4, Indels: 3
0.87 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 39 0.87
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.25
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:46214407 original size:17 final size:17
Alignment explanation
Indices: 46214385--46214423 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
46214375 AGCATTTGTG
*
46214385 TATGAAAATGTATTA-TT
1 TATGAAAAT-TATAAGTT
46214402 TATGAAAATTATAAGTT
1 TATGAAAATTATAAGTT
46214419 TATGA
1 TATGA
46214424 CTAAATGTGA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 4 0.20
17 16 0.80
ACGTcount: A:0.44, C:0.00, G:0.13, T:0.44
Consensus pattern (17 bp):
TATGAAAATTATAAGTT
Found at i:46214683 original size:49 final size:49
Alignment explanation
Indices: 46214606--46214705 Score: 182
Period size: 49 Copynumber: 2.0 Consensus size: 49
46214596 TTCATCACAC
* *
46214606 TATCTACTATTTCGGTACTTAATAAGTTAAACTTAAATTATGGCATGTA
1 TATCAACTATTTCGGTACTTAATAAGTTAAAATTAAATTATGGCATGTA
46214655 TATCAACTATTTCGGTACTTAATAAGTTAAAATTAAATTATGGCATGTA
1 TATCAACTATTTCGGTACTTAATAAGTTAAAATTAAATTATGGCATGTA
46214704 TA
1 TA
46214706 GGCTAGCCTT
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 49 1.00
ACGTcount: A:0.37, C:0.11, G:0.12, T:0.40
Consensus pattern (49 bp):
TATCAACTATTTCGGTACTTAATAAGTTAAAATTAAATTATGGCATGTA
Found at i:46217493 original size:14 final size:14
Alignment explanation
Indices: 46217476--46217503 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
46217466 TAAGTGGTTT
46217476 ATATTAAGGTTGTG
1 ATATTAAGGTTGTG
46217490 ATATTAAGGTTGTG
1 ATATTAAGGTTGTG
46217504 TAACAAGTGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.29, C:0.00, G:0.29, T:0.43
Consensus pattern (14 bp):
ATATTAAGGTTGTG
Found at i:46218495 original size:32 final size:32
Alignment explanation
Indices: 46218458--46218523 Score: 132
Period size: 32 Copynumber: 2.1 Consensus size: 32
46218448 CTCACATTGC
46218458 TACTGAATAGGGCTTGGCCCAGACTGTACTGA
1 TACTGAATAGGGCTTGGCCCAGACTGTACTGA
46218490 TACTGAATAGGGCTTGGCCCAGACTGTACTGA
1 TACTGAATAGGGCTTGGCCCAGACTGTACTGA
46218522 TA
1 TA
46218524 ATGTTTTATT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (32 bp):
TACTGAATAGGGCTTGGCCCAGACTGTACTGA
Found at i:46220822 original size:40 final size:40
Alignment explanation
Indices: 46220760--46221015 Score: 374
Period size: 40 Copynumber: 6.4 Consensus size: 40
46220750 AAACCAAGTA
* * *
46220760 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
**
46220799 CCTTCGGGACTTAGCCCGGATATAGTAGTTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
46220839 CCTTCGGGACTTAGCTCGGATATAGTAACTCGCAAAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
46220879 CCTTCGGGACTTAGCACGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
46220919 CCTTCGGGACTTAGCCCGGATATAGTGACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
46220959 CCTTCGGGACTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
46220999 CCTTCGGGACTTAGCCC
1 CCTTCGGGACTTAGCCC
46221016 CGTTATCATC
Statistics
Matches: 199, Mismatches: 15, Indels: 5
0.91 0.07 0.02
Matches are distributed among these distances:
39 14 0.07
40 185 0.93
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:46227658 original size:34 final size:34
Alignment explanation
Indices: 46227620--46227701 Score: 96
Period size: 34 Copynumber: 2.4 Consensus size: 34
46227610 GCAAATAGTC
* * *
46227620 TGGGCCTAAGCCC-TTAATAGTAGCAATATCAGTG
1 TGGGCCTAAGCCCATT-ATAGCAACAATATCAATG
46227654 TGGGCC-ATAGCCCATTATAGCAACAATATCAATG
1 TGGGCCTA-AGCCCATTATAGCAACAATATCAATG
*
46227688 TGGGCCTTAGCCCA
1 TGGGCCTAAGCCCA
46227702 ATTCACTACA
Statistics
Matches: 41, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
33 1 0.02
34 38 0.93
35 2 0.05
ACGTcount: A:0.29, C:0.24, G:0.22, T:0.24
Consensus pattern (34 bp):
TGGGCCTAAGCCCATTATAGCAACAATATCAATG
Found at i:46228033 original size:26 final size:25
Alignment explanation
Indices: 46227985--46228035 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 25
46227975 TAATCATACA
*
46227985 ACCTATAGGGGTATATCCATCATTT
1 ACCTATAGGGGTATATACATCATTT
46228010 ACCTCATAGGGGTATA-ACAGTCATTT
1 ACCT-ATAGGGGTATATACA-TCATTT
46228036 CATAGATTAG
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
25 6 0.26
26 17 0.74
ACGTcount: A:0.29, C:0.20, G:0.18, T:0.33
Consensus pattern (25 bp):
ACCTATAGGGGTATATACATCATTT
Found at i:46245192 original size:15 final size:14
Alignment explanation
Indices: 46245156--46245187 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
46245146 AAAACCCTAA
46245156 TTTTC-CCTTTTTC
1 TTTTCTCCTTTTTC
46245169 TTTTCTCCTTTTT-
1 TTTTCTCCTTTTTC
46245182 TTTTCT
1 TTTTCT
46245188 TTCCTATTTC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 11 0.61
14 7 0.39
ACGTcount: A:0.00, C:0.25, G:0.00, T:0.75
Consensus pattern (14 bp):
TTTTCTCCTTTTTC
Found at i:46245258 original size:17 final size:19
Alignment explanation
Indices: 46245215--46245265 Score: 56
Period size: 17 Copynumber: 2.8 Consensus size: 19
46245205 ATTCTCTGTT
46245215 CTTTCTTT-TTCTATTTTA
1 CTTTCTTTATTCTATTTTA
46245233 -TTTCTTTTATT-T-TTTTA
1 CTTTC-TTTATTCTATTTTA
*
46245250 CTTTCTTTATTATATT
1 CTTTCTTTATTCTATT
46245266 ATATTATATT
Statistics
Matches: 28, Mismatches: 0, Indels: 9
0.76 0.00 0.24
Matches are distributed among these distances:
17 15 0.54
18 9 0.32
19 4 0.14
ACGTcount: A:0.14, C:0.12, G:0.00, T:0.75
Consensus pattern (19 bp):
CTTTCTTTATTCTATTTTA
Found at i:46256470 original size:29 final size:28
Alignment explanation
Indices: 46256436--46256538 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
46256426 TACTCAATCA
*
46256436 CGCACACTTAGTGCCATATGATTCAAGCC
1 CGCACACTTAGTGCCATAT-ATTCAAGCT
* * *
46256465 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCATATA-TTCAAGCT
* *
46256494 CGCACACTTAGTGCCGTACATTACAAGCT
1 CGCACACTTAGTGCCATATATT-CAAGCT
*
46256523 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
46256539 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
28 2 0.03
29 59 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (28 bp):
CGCACACTTAGTGCCATATATTCAAGCT
Found at i:46258554 original size:20 final size:20
Alignment explanation
Indices: 46258524--46258568 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
46258514 CTGTTTTGTT
46258524 ATGGG-CCAACTGTATTAAA
1 ATGGGCCCAACTGTATTAAA
* *
46258543 ATGGGCCCAACTGTGTTAAT
1 ATGGGCCCAACTGTATTAAA
46258563 ATGGGC
1 ATGGGC
46258569 AAGGCCCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 5 0.22
20 18 0.78
ACGTcount: A:0.29, C:0.18, G:0.27, T:0.27
Consensus pattern (20 bp):
ATGGGCCCAACTGTATTAAA
Found at i:46271154 original size:29 final size:29
Alignment explanation
Indices: 46271053--46271146 Score: 170
Period size: 29 Copynumber: 3.2 Consensus size: 29
46271043 GTGACGAGAT
46271053 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
46271082 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
46271111 TGGCACTAAGTGTGCATGCTGGAAATAGA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
46271140 CGGCACT
1 TGGCACT
46271147 GGGTGTGCGA
Statistics
Matches: 63, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 63 1.00
ACGTcount: A:0.30, C:0.16, G:0.29, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:46271183 original size:58 final size:58
Alignment explanation
Indices: 46271049--46271175 Score: 159
Period size: 58 Copynumber: 2.2 Consensus size: 58
46271039 TAAGGTGACG
* * *
46271049 AGAT-TGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAA
1 AGATATGGCACTAAGTGTGCATGCTGGAAATAGACGGCACTAAGTGTGCATGCTCGAA
* **
46271106 ATATATGGCACTAAGTGTGCATGCTGGAAATAGACGGCACTGGGTGTGCGA-GCTCGAA
1 AGATATGGCACTAAGTGTGCATGCTGGAAATAGACGGCACTAAGTGTGC-ATGCTCGAA
* *
46271164 GGGTATGGCACT
1 AGATATGGCACT
46271176 GTGTGTGCGG
Statistics
Matches: 59, Mismatches: 9, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
57 3 0.05
58 55 0.93
59 1 0.02
ACGTcount: A:0.28, C:0.16, G:0.32, T:0.24
Consensus pattern (58 bp):
AGATATGGCACTAAGTGTGCATGCTGGAAATAGACGGCACTAAGTGTGCATGCTCGAA
Found at i:46279676 original size:40 final size:40
Alignment explanation
Indices: 46279597--46279734 Score: 210
Period size: 39 Copynumber: 3.5 Consensus size: 40
46279587 GGATATAACG
* *
46279597 ACTCGCTCAAATGCCTTCGGGAC-AAACCC-GGTTATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAACCCGGGTT-TAGTA
*
46279636 ACTCGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAACCCGGGTTTAGTA
*
46279676 ACTCGCACAAATGCCTTCGGG-CTTAACCCGGATTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAACCCGGGTTTAGTA
46279715 ACTCGCACAAATGCCTTCGG
1 ACTCGCACAAATGCCTTCGG
46279735 ATCTTAGTCC
Statistics
Matches: 92, Mismatches: 5, Indels: 4
0.91 0.05 0.04
Matches are distributed among these distances:
39 58 0.63
40 30 0.33
41 4 0.04
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.24
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAACCCGGGTTTAGTA
Found at i:46279764 original size:79 final size:81
Alignment explanation
Indices: 46279604--46279786 Score: 209
Period size: 79 Copynumber: 2.3 Consensus size: 81
46279594 ACGACTCGCT
* *
46279604 CAAATGCCTTCGGGAC-AAACCCGG-TTATAGTAACTCGCACGAATGCCTTCGGGACTTAACCCG
1 CAAATGCCTTCGGGACTTAACCCGGATTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
* * **
46279667 GGTTTAGTAACTCGCA
66 GATATAGTAACTAACA
**
46279683 CAAATGCCTTCGGG-CTTAACCCGGATT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCC
1 CAAATGCCTTCGGGACTTAACCCGGATTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
*
46279745 GGATATA-TCACTTAACA
65 GGATATAGTAAC-TAACA
*
46279762 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
46279787 CATCATTCAA
Statistics
Matches: 89, Mismatches: 10, Indels: 10
0.82 0.09 0.09
Matches are distributed among these distances:
78 16 0.18
79 71 0.80
80 2 0.02
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAACCCGGATTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
GATATAGTAACTAACA
Found at i:46283057 original size:29 final size:29
Alignment explanation
Indices: 46283029--46283187 Score: 221
Period size: 29 Copynumber: 5.5 Consensus size: 29
46283019 CCTCCGAGCT
** * * *
46283029 CGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
* * *
46283058 TGCACACATAGTGTCATAT-TTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
* *
46283086 TGCACACTTAGTGCCTTATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
46283115 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
46283144 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
46283173 CGCACACTTAGTGCC
1 CGCACACTTAGTGCC
46283188 GATCTCGTCA
Statistics
Matches: 118, Mismatches: 11, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
28 24 0.20
29 94 0.80
ACGTcount: A:0.25, C:0.31, G:0.15, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:46283091 original size:86 final size:86
Alignment explanation
Indices: 46283000--46283179 Score: 193
Period size: 86 Copynumber: 2.1 Consensus size: 86
46282990 AATTTAAGCC
* * * **
46283000 CGCACACACAGTGCC-ATACCCTCCGAGCTCGCACACCCAGTGCCGTATTTTTCCAGCTTGCACA
1 CGCACACACAGTGCCTATA-CCTCC-AGCACGCACACCCAGTGCCATATATTTCCAGCACGCACA
*
46283064 CATAGTGTCATAT-TTTCCAGCA
64 CATAGTGCCATATATTTCCAGCA
* ** ** **
46283086 TGCACACTTAGTGCCTTATATTTCCAGCACGCACACTTAGTGCCATATATTTCCAGCACGCACAC
1 CGCACACACAGTGCC-TATACCTCCAGCACGCACACCCAGTGCCATATATTTCCAGCACGCACAC
*
46283151 TTAGTGCCATATATTTCCAGCA
65 ATAGTGCCATATATTTCCAGCA
46283173 CGCACAC
1 CGCACAC
46283180 TTAGTGCCGA
Statistics
Matches: 76, Mismatches: 15, Indels: 5
0.79 0.16 0.05
Matches are distributed among these distances:
86 55 0.72
87 18 0.24
88 3 0.04
ACGTcount: A:0.25, C:0.34, G:0.15, T:0.26
Consensus pattern (86 bp):
CGCACACACAGTGCCTATACCTCCAGCACGCACACCCAGTGCCATATATTTCCAGCACGCACACA
TAGTGCCATATATTTCCAGCA
Found at i:46283164 original size:58 final size:57
Alignment explanation
Indices: 46282971--46283187 Score: 222
Period size: 58 Copynumber: 3.8 Consensus size: 57
46282961 TACTCGATTT
* * ** *** *
46282971 CGCACACTTAGTGCCACGTA-ATTT-AAGCCCGCACACACAGTGCCATACCCTCCGAGCT
1 CGCACACTTAGTGCCA--TATATTTCCAGCACGCACACTTAGTGCCATATTTTCC-AGCA
** * * ** * *
46283029 CGCACACCCAGTGCCGTATTTTTCCAGCTTGCACACATAGTGTCATATTTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCACGCACACTTAGTGCCATATTTTCCAGCA
* *
46283086 TGCACACTTAGTGCCTTATATTTCCAGCACGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCACGCACACTTAGTGCCATAT-TTTCCAGCA
46283144 CGCACACTTAGTGCCATATATTTCCAGCACGCACACTTAGTGCC
1 CGCACACTTAGTGCCATATATTTCCAGCACGCACACTTAGTGCC
46283188 GATCTCGTCA
Statistics
Matches: 132, Mismatches: 24, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
56 2 0.02
57 45 0.34
58 85 0.64
ACGTcount: A:0.25, C:0.33, G:0.16, T:0.26
Consensus pattern (57 bp):
CGCACACTTAGTGCCATATATTTCCAGCACGCACACTTAGTGCCATATTTTCCAGCA
Found at i:46283207 original size:86 final size:86
Alignment explanation
Indices: 46283029--46283187 Score: 210
Period size: 86 Copynumber: 1.8 Consensus size: 86
46283019 CCTCCGAGCT
** * * ** * *
46283029 CGCACACCCAGTGCCGTATTTTTCCAGCTTGCACACATAGTGTCATATTTTCCAGCATGCACACT
1 CGCACACTTAGTGCCATATATTTCCAGCACGCACACATAGTGCCATATTTTCCAGCACGCACACT
* *
46283094 TAGTGCCTTATATTTCCAGCA
66 TAGTGCCTGATATGTCCAGCA
*
46283115 CGCACACTTAGTGCCATATATTTCCAGCACGCACACTTAGTGCCATATATTTCCAGCACGCACAC
1 CGCACACTTAGTGCCATATATTTCCAGCACGCACACATAGTGCCATAT-TTTCCAGCACGCACAC
46283180 TTAGTGCC
65 TTAGTGCC
46283188 GATCTCGTCA
Statistics
Matches: 63, Mismatches: 9, Indels: 1
0.86 0.12 0.01
Matches are distributed among these distances:
86 40 0.63
87 23 0.37
ACGTcount: A:0.25, C:0.31, G:0.15, T:0.29
Consensus pattern (86 bp):
CGCACACTTAGTGCCATATATTTCCAGCACGCACACATAGTGCCATATTTTCCAGCACGCACACT
TAGTGCCTGATATGTCCAGCA
Found at i:46291159 original size:29 final size:29
Alignment explanation
Indices: 46291131--46291290 Score: 221
Period size: 29 Copynumber: 5.5 Consensus size: 29
46291121 CCTCCGAGCT
** * * *
46291131 CGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
* * * *
46291160 TGCACACATAGTGTCATATTTTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
* *
46291189 TGCACACTTAGTGCCTTATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
46291218 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
46291247 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
46291276 CGCACACTTAGTGCC
1 CGCACACTTAGTGCC
46291291 GATCTCGTCA
Statistics
Matches: 119, Mismatches: 12, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 119 1.00
ACGTcount: A:0.24, C:0.31, G:0.15, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:46291194 original size:87 final size:86
Alignment explanation
Indices: 46291102--46291282 Score: 193
Period size: 87 Copynumber: 2.1 Consensus size: 86
46291092 AATTTAAGCC
* * * **
46291102 CGCACACACAGTGCC-ATACCCTCCGAGCTCGCACACCCAGTGCCGTATTTTTCCAGCTTGCACA
1 CGCACACACAGTGCCTATA-CCTCC-AGCACGCACACCCAGTGCCATATATTTCCAGCACGCACA
* *
46291166 CATAGTGTCATATTTTTCCAGCA
64 CATAGTGCCATATATTTCCAGCA
* ** ** **
46291189 TGCACACTTAGTGCCTTATATTTCCAGCACGCACACTTAGTGCCATATATTTCCAGCACGCACAC
1 CGCACACACAGTGCC-TATACCTCCAGCACGCACACCCAGTGCCATATATTTCCAGCACGCACAC
*
46291254 TTAGTGCCATATATTTCCAGCA
65 ATAGTGCCATATATTTCCAGCA
46291276 CGCACAC
1 CGCACAC
46291283 TTAGTGCCGA
Statistics
Matches: 76, Mismatches: 16, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
87 70 0.92
88 3 0.04
89 3 0.04
ACGTcount: A:0.25, C:0.34, G:0.15, T:0.27
Consensus pattern (86 bp):
CGCACACACAGTGCCTATACCTCCAGCACGCACACCCAGTGCCATATATTTCCAGCACGCACACA
TAGTGCCATATATTTCCAGCA
Found at i:46301978 original size:40 final size:40
Alignment explanation
Indices: 46301851--46301980 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
46301841 ATGCTGGAAA
* *
46301851 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * **
46301891 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
46301931 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
46301971 TTATATCCGG
1 TTATATCCGG
46301981 TTGTATTCCG
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 4 0.05
40 72 0.95
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:46310036 original size:40 final size:40
Alignment explanation
Indices: 46309909--46310038 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
46309899 ATGCTGGAAA
* *
46309909 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * **
46309949 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
46309989 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
46310029 TTATATCCGG
1 TTATATCCGG
46310039 TTGTATTCCG
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 4 0.05
40 72 0.95
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:46312822 original size:46 final size:46
Alignment explanation
Indices: 46312755--46312929 Score: 205
Period size: 46 Copynumber: 3.8 Consensus size: 46
46312745 TGTAACCCGC
*
46312755 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
* *
46312801 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCAT
* * * *
46312851 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
*
46312894 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGG
46312930 ATGCTCAACC
Statistics
Matches: 108, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 2 0.02
46 61 0.56
47 27 0.25
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
Found at i:46312875 original size:93 final size:93
Alignment explanation
Indices: 46312762--46312933 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
46312752 CGCCCATAAG
* * *
46312762 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
46312827 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
46312855 CGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
46312920 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
46312934 TCAACCATCC
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:46314580 original size:18 final size:18
Alignment explanation
Indices: 46314557--46314594 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
46314547 AGTAAGTTTG
46314557 TATAACAAGAATTAAACT
1 TATAACAAGAATTAAACT
46314575 TATAACAAGAATTAAACT
1 TATAACAAGAATTAAACT
46314593 TA
1 TA
46314595 CCAATCACAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.55, C:0.11, G:0.05, T:0.29
Consensus pattern (18 bp):
TATAACAAGAATTAAACT
Found at i:46322717 original size:18 final size:20
Alignment explanation
Indices: 46322681--46322727 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
46322671 ATTTGTAAGT
46322681 ATATATATGTGAATAATTTG
1 ATATATATGTGAATAATTTG
* *
46322701 ATAT-TATGTGATTATTTTG
1 ATATATATGTGAATAATTTG
46322720 ATGATATA
1 AT-ATATA
46322728 ACATGTTCTT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
19 15 0.65
20 6 0.26
21 2 0.09
ACGTcount: A:0.36, C:0.00, G:0.15, T:0.49
Consensus pattern (20 bp):
ATATATATGTGAATAATTTG
Found at i:46323199 original size:50 final size:50
Alignment explanation
Indices: 46323125--46323410 Score: 308
Period size: 50 Copynumber: 5.7 Consensus size: 50
46323115 TAAGACAGTT
46323125 TTAGGTCACGTGTGTAGTACTAAGTGCAAGCTACTACGTGTACCAGATTG
1 TTAGGTCACGTGTGTAGTACTAAGTGCAAGCTACTACGTGTACCAGATTG
* * * * * * *
46323175 TTAGGTCGCATGTGTAGTATTAAGTGCAGGCTACTATGCGTA-CACGATAG
1 TTAGGTCACGTGTGTAGTACTAAGTGCAAGCTACTACGTGTACCA-GATTG
* * * * * *
46323225 TTTCA-ATCACGTGTGTAGTACTAAGGGCAAGCTACTACATGTATCATATGG
1 -TT-AGGTCACGTGTGTAGTACTAAGTGCAAGCTACTACGTGTACCAGATTG
* * * *
46323276 TTAGGTCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGCATCAGA-TG
1 TTAGGTCACGTGTGTAGTACTAAGTGCAAGCTACTACGTGTACCAGATTG
* * * *
46323325 ATAAGTCATGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTG
1 TTAGGTCACGTGTGTAGTACTAAGTGCAAGCTACTACGTGTACCAGATTG
* * *
46323375 ATAGGTCGCATGTGTAGTACTAAGTGCAAGCTACTA
1 TTAGGTCACGTGTGTAGTACTAAGTGCAAGCTACTA
46323411 TCGTACCAGA
Statistics
Matches: 193, Mismatches: 37, Indels: 12
0.80 0.15 0.05
Matches are distributed among these distances:
49 45 0.23
50 111 0.58
51 34 0.18
52 3 0.02
ACGTcount: A:0.27, C:0.17, G:0.26, T:0.30
Consensus pattern (50 bp):
TTAGGTCACGTGTGTAGTACTAAGTGCAAGCTACTACGTGTACCAGATTG
Found at i:46323258 original size:101 final size:100
Alignment explanation
Indices: 46323129--46323416 Score: 377
Period size: 99 Copynumber: 2.9 Consensus size: 100
46323119 ACAGTTTTAG
46323129 GTCACGTGTGTAGTACTAAGTGCAAGCTACTACGTGTACCAGATTGTTAGGTCGCATGTGTAGTA
1 GTCACGTGTGTAGTACTAAGTGCAAGCTACTACGTGTACCAGATTGTTAGGTCGCATGTGTAGTA
* *
46323194 TTAAGTGCAGGCTACTATGCGTACA-C-GATAGTTTCAA
66 CTAAGTGCAGGCTACTAT-CGTACATCAGAT-G-AT-AA
* * * * * * *
46323231 -TCACGTGTGTAGTACTAAGGGCAAGCTACTACATGTATCATATGGTTAGGTCACGTGTGTAGTA
1 GTCACGTGTGTAGTACTAAGTGCAAGCTACTACGTGTACCAGATTGTTAGGTCGCATGTGTAGTA
* *
46323295 CTAAGTGTAGGCTACTA-CGTGCATCAGATGATAA
66 CTAAGTGCAGGCTACTATCGTACATCAGATGATAA
* * *
46323329 GTCATGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTA
1 GTCACGTGTGTAGTACTAAGTGCAAGCTACTACGTGTACCAGATTGTTAGGTCGCATGTGTAGTA
*
46323394 CTAAGTGCAAGCTACTATCGTAC
66 CTAAGTGCAGGCTACTATCGTAC
46323417 CAGAGATCTT
Statistics
Matches: 158, Mismatches: 24, Indels: 10
0.82 0.12 0.05
Matches are distributed among these distances:
98 2 0.01
99 75 0.47
100 6 0.04
101 75 0.47
ACGTcount: A:0.27, C:0.17, G:0.26, T:0.30
Consensus pattern (100 bp):
GTCACGTGTGTAGTACTAAGTGCAAGCTACTACGTGTACCAGATTGTTAGGTCGCATGTGTAGTA
CTAAGTGCAGGCTACTATCGTACATCAGATGATAA
Found at i:46324312 original size:180 final size:180
Alignment explanation
Indices: 46323978--46324315 Score: 516
Period size: 180 Copynumber: 1.9 Consensus size: 180
46323968 TCCAAGAGCT
* * *
46323978 GTACCATGAGATAAATAATTTTTAGTGAAGAGAGGTCAGAACTATCAGATAGTGAAACAGGGGTA
1 GTACCATGAAATAAATAATTTTTAGTGAAGAGAGGTCAGAACTATCAAACAGTGAAACAGGGGTA
* * * * *
46324043 TTTTTAATGAATAAACTGTACTAATTGGCTAAACTAAAAATTTTAAAATTTTTATGTTAAGAATA
66 TCTTTAATGAATAAACTGTACTAATTGGCTAAACCAAAAATTTGAAAATTTTTATGGTAAGAAGA
* * *
46324108 TATGTGAGTATATTTTTTGGTAAAATTAGTGGTTTTCAATTTGGAGTCTC
131 TATATGAGTATAGTTTTAGGTAAAATTAGTGGTTTTCAATTTGGAGTCTC
* * *
46324158 GTACCATGAAATAAATAATTTTTAGTGAAGAGAGGTCAGAACTGTTAAACAGTGAAATAGGGGTA
1 GTACCATGAAATAAATAATTTTTAGTGAAGAGAGGTCAGAACTATCAAACAGTGAAACAGGGGTA
*
46324223 TCTTTAATGAATAAACTGTACTAATTGGCTAAACCAAAAATTCTGAACA-TTTTATGGTAAGAAG
66 TCTTTAATGAATAAACTGTACTAATTGGCTAAACCAAAAATT-TGAAAATTTTTATGGTAAGAAG
*
46324287 ATATATGAGTCTAGTTTTAGGTAAAATTA
130 ATATATGAGTATAGTTTTAGGTAAAATTA
46324316 ACAGATCTTA
Statistics
Matches: 141, Mismatches: 16, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
180 137 0.97
181 4 0.03
ACGTcount: A:0.38, C:0.08, G:0.19, T:0.35
Consensus pattern (180 bp):
GTACCATGAAATAAATAATTTTTAGTGAAGAGAGGTCAGAACTATCAAACAGTGAAACAGGGGTA
TCTTTAATGAATAAACTGTACTAATTGGCTAAACCAAAAATTTGAAAATTTTTATGGTAAGAAGA
TATATGAGTATAGTTTTAGGTAAAATTAGTGGTTTTCAATTTGGAGTCTC
Found at i:46338841 original size:22 final size:21
Alignment explanation
Indices: 46338810--46338850 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
46338800 CTCTTAACAC
*
46338810 AGGGGAACACGCCCATGTGGG
1 AGGGGAACACACCCATGTGGG
*
46338831 AGGGGCAACACACCCGTGTG
1 AGGGG-AACACACCCATGTG
46338851 ACAATTCAAC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 5 0.29
22 12 0.71
ACGTcount: A:0.24, C:0.27, G:0.39, T:0.10
Consensus pattern (21 bp):
AGGGGAACACACCCATGTGGG
Found at i:46341953 original size:43 final size:42
Alignment explanation
Indices: 46341894--46341989 Score: 104
Period size: 42 Copynumber: 2.3 Consensus size: 42
46341884 TCCTAGGTGT
* * *
46341894 GGTCTTACATGTAATCAAACATCGATGCC-ACTATCCCAGACAG
1 GGTCTTACACGAAATCAAACA-CGATACCGA-TATCCCAGACAG
* * * *
46341937 GGTCTTACACGAAATCAGATACGATACCGATGTCCCAGACAT
1 GGTCTTACACGAAATCAAACACGATACCGATATCCCAGACAG
46341979 GGTCTTACACG
1 GGTCTTACACG
46341990 TAAAATAGAA
Statistics
Matches: 45, Mismatches: 7, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
42 27 0.60
43 18 0.40
ACGTcount: A:0.31, C:0.27, G:0.19, T:0.23
Consensus pattern (42 bp):
GGTCTTACACGAAATCAAACACGATACCGATATCCCAGACAG
Found at i:46342142 original size:11 final size:11
Alignment explanation
Indices: 46342110--46342134 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
46342100 CTTTTCGAAC
46342110 GTCGAAACTTT
1 GTCGAAACTTT
46342121 GTCGAAACTTT
1 GTCGAAACTTT
46342132 GTC
1 GTC
46342135 AATACTTTCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.24, C:0.20, G:0.20, T:0.36
Consensus pattern (11 bp):
GTCGAAACTTT
Found at i:46342161 original size:18 final size:18
Alignment explanation
Indices: 46342140--46342198 Score: 59
Period size: 18 Copynumber: 3.3 Consensus size: 18
46342130 TTGTCAATAC
46342140 TTTCTCGGATGTCTTATT
1 TTTCTCGGATGTCTTATT
** * *
46342158 TTTCTC--AACTCATATAC
1 TTTCTCGGATGTCTTAT-T
46342175 TTTCTCGGATGTCTTATT
1 TTTCTCGGATGTCTTATT
46342193 TTTCTC
1 TTTCTC
46342199 AACTCATATA
Statistics
Matches: 30, Mismatches: 8, Indels: 6
0.68 0.18 0.14
Matches are distributed among these distances:
16 6 0.20
17 6 0.20
18 12 0.40
19 6 0.20
ACGTcount: A:0.15, C:0.22, G:0.10, T:0.53
Consensus pattern (18 bp):
TTTCTCGGATGTCTTATT
Found at i:46342182 original size:35 final size:35
Alignment explanation
Indices: 46342136--46342210 Score: 150
Period size: 35 Copynumber: 2.1 Consensus size: 35
46342126 AACTTTGTCA
46342136 ATACTTTCTCGGATGTCTTATTTTTCTCAACTCAT
1 ATACTTTCTCGGATGTCTTATTTTTCTCAACTCAT
46342171 ATACTTTCTCGGATGTCTTATTTTTCTCAACTCAT
1 ATACTTTCTCGGATGTCTTATTTTTCTCAACTCAT
46342206 ATACT
1 ATACT
46342211 CATTCATCAT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 40 1.00
ACGTcount: A:0.21, C:0.23, G:0.08, T:0.48
Consensus pattern (35 bp):
ATACTTTCTCGGATGTCTTATTTTTCTCAACTCAT
Found at i:46352246 original size:53 final size:54
Alignment explanation
Indices: 46352178--46352384 Score: 186
Period size: 53 Copynumber: 3.8 Consensus size: 54
46352168 TTCCTTTTTA
* *
46352178 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTAT-G
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
* * * * * *
46352231 AACTCACCATTGCCATGCCTTGGCATGGTCTTACATGGGATCTTTGCCTTATCG
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
** * * * * * * * * *
46352285 TAGTTTATCAATGCCATGTCTTGACATTGTCTTAAATGATTTCATTGTCTTGTAG
1 -AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
*
46352340 AACTTACCAATGCCACT-CCTTGGA-ATGGTCTTACTTGGTATCCTT
1 AACTTACCAATGCCA-TGCCTT-GACATGGTCTTACATGGTATCCTT
46352385 AAACCCTAAT
Statistics
Matches: 119, Mismatches: 31, Indels: 7
0.76 0.20 0.04
Matches are distributed among these distances:
53 47 0.39
54 31 0.26
55 41 0.34
ACGTcount: A:0.21, C:0.23, G:0.17, T:0.38
Consensus pattern (54 bp):
AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
Found at i:46355938 original size:27 final size:27
Alignment explanation
Indices: 46355904--46355976 Score: 110
Period size: 27 Copynumber: 2.7 Consensus size: 27
46355894 TGGATAAGTT
*
46355904 GTAGAATTACTAAAATACCCCTGTAAG
1 GTAGAATTACTGAAATACCCCTGTAAG
*
46355931 GTAGAATTACTGAAATACCCCTGTAGG
1 GTAGAATTACTGAAATACCCCTGTAAG
* *
46355958 GTAAAATTACCGAAATACC
1 GTAGAATTACTGAAATACC
46355977 TGTAACACCC
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 42 1.00
ACGTcount: A:0.40, C:0.19, G:0.16, T:0.25
Consensus pattern (27 bp):
GTAGAATTACTGAAATACCCCTGTAAG
Done.