Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr03 135709677
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 135709677
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 157 of 438
Found at i:47692769 original size:27 final size:27
Alignment explanation
Indices: 47692672--47692769 Score: 81
Period size: 27 Copynumber: 3.6 Consensus size: 27
47692662 CTCGACCTGT
* * **
47692672 AAAATTATTGAAATACCCTCGACTTGT
1 AAAATTATCGAAATACCCTCGATTTAC
* *
47692699 AAAATTA-CCAAAGTACCCTTGATTTAC
1 AAAATTATCGAAA-TACCCTCGATTTAC
* * ***
47692726 AGAATTACCGTTTTACCCTCGATTTAC
1 AAAATTATCGAAATACCCTCGATTTAC
47692753 AAAATTATCGAAATACC
1 AAAATTATCGAAATACC
47692770 TTTATAGGGT
Statistics
Matches: 52, Mismatches: 17, Indels: 4
0.71 0.23 0.05
Matches are distributed among these distances:
26 3 0.06
27 48 0.92
28 1 0.02
ACGTcount: A:0.38, C:0.21, G:0.09, T:0.32
Consensus pattern (27 bp):
AAAATTATCGAAATACCCTCGATTTAC
Found at i:47692791 original size:27 final size:27
Alignment explanation
Indices: 47692755--47692985 Score: 318
Period size: 27 Copynumber: 8.6 Consensus size: 27
47692745 CGATTTACAA
** *
47692755 AATTATCGAAATACCTTTATAGGGTAG
1 AATTATCGAAATACCCCTGTAGGGTAG
* * *
47692782 AAATACCGAAATACCCTTGTAGGGTAG
1 AATTATCGAAATACCCCTGTAGGGTAG
* *
47692809 AATTATCGTAATACCCCTGTAAGGTAG
1 AATTATCGAAATACCCCTGTAGGGTAG
*
47692836 AATTATCGCAATACCCCTGTAGGGTAG
1 AATTATCGAAATACCCCTGTAGGGTAG
*
47692863 AATTATCGAAATACCCCTATAGGGTAG
1 AATTATCGAAATACCCCTGTAGGGTAG
*
47692890 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTATCGAAATACCCCTGTAGGGTAG
*
47692917 AATTATCGAAATACCGCTGTAGGGTAG
1 AATTATCGAAATACCCCTGTAGGGTAG
** *
47692944 AATTATTAAAATACCCCTGTAGGGTGG
1 AATTATCGAAATACCCCTGTAGGGTAG
*
47692971 AATTATCGAGATACC
1 AATTATCGAAATACC
47692986 TTGTGGGGTA
Statistics
Matches: 180, Mismatches: 24, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 180 1.00
ACGTcount: A:0.35, C:0.18, G:0.21, T:0.27
Consensus pattern (27 bp):
AATTATCGAAATACCCCTGTAGGGTAG
Found at i:47695172 original size:78 final size:79
Alignment explanation
Indices: 47695037--47695187 Score: 200
Period size: 78 Copynumber: 1.9 Consensus size: 79
47695027 GAATGATGTC
* * *
47695037 CGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCGTTCGT
1 CGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTCGT
47695102 GCGAGTTAATAAAT
66 GCGAGTTAATAAAT
* * **
47695116 CGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCATTC
1 CGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCATTC
47695178 GTGCGAGTTA
64 GTGCGAGTTA
47695188 CTATAACCAG
Statistics
Matches: 63, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
77 1 0.02
78 46 0.73
79 16 0.25
ACGTcount: A:0.25, C:0.22, G:0.29, T:0.24
Consensus pattern (79 bp):
CGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTCGT
GCGAGTTAATAAAT
Found at i:47695174 original size:40 final size:40
Alignment explanation
Indices: 47695036--47695218 Score: 178
Period size: 40 Copynumber: 4.6 Consensus size: 40
47695026 TGAATGATGT
* * * *
47695036 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAAC
* * * *
47695076 CCGGACTAAGAT-CCGAAGGCGTTCGTGCGAGTTAATAAA-
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAAC
*
47695115 TCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAAC
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAC
* *
47695154 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAA-
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AAC
* **
47695194 CCAGGCTTTGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
47695219 AGTGAGTCGT
Statistics
Matches: 118, Mismatches: 19, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
38 24 0.20
39 16 0.14
40 69 0.58
41 9 0.08
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAC
Found at i:47697855 original size:40 final size:40
Alignment explanation
Indices: 47697714--47697898 Score: 162
Period size: 40 Copynumber: 4.7 Consensus size: 40
47697704 TCGAATGATG
* *
47697714 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-AAGTTACTAAA
* * * * * *
47697754 TCCGGACTAGGAT-CCGAAGGCATTCGTGCGAGATAATAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCAAGTTACTAAA
47697794 TCCGGGCTAAG-CCCGAAGGCATTTGTGCAAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTAAA
* * * ** *
47697833 CCCGGGTTAAGTCCCGAAGGCATTCGTGTGAGTCACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTA-AA
** *
47697874 -CCGGGCTTCGACCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
47697899 AGCGAGTCGT
Statistics
Matches: 115, Mismatches: 25, Indels: 10
0.77 0.17 0.07
Matches are distributed among these distances:
39 32 0.28
40 74 0.64
41 9 0.08
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.23
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTAAA
Found at i:47697878 original size:79 final size:81
Alignment explanation
Indices: 47697714--47697898 Score: 202
Period size: 79 Copynumber: 2.3 Consensus size: 81
47697704 TCGAATGATG
* * * *
47697714 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATT
1 TCCGGGCTAAGACCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
47697778 CGTGCGAGATAATAAA
66 CGTGCGAGATAATAAA
* **
47697794 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGACCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCAT
* *
47697856 TCGTGTGAG-TCACTATAA
65 TCGTGCGAGAT-AATA-AA
**
47697874 -CCGGGCTTCGACCCGAAGGCATTTG
1 TCCGGGCTAAGACCCGAAGGCATTTG
47697899 AGCGAGTCGT
Statistics
Matches: 90, Mismatches: 10, Indels: 10
0.82 0.09 0.09
Matches are distributed among these distances:
78 2 0.02
79 54 0.60
80 34 0.38
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.23
Consensus pattern (81 bp):
TCCGGGCTAAGACCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
CGTGCGAGATAATAAA
Found at i:47700083 original size:40 final size:40
Alignment explanation
Indices: 47700024--47700165 Score: 124
Period size: 40 Copynumber: 3.5 Consensus size: 40
47700014 AAACTGAATG
* * *
47700024 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ***
47700064 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ** *
47700104 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTAGAAACT
*
47700144 CTATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
47700166 GCATTTGTGC
Statistics
Matches: 86, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
39 3 0.03
40 83 0.97
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:47700166 original size:40 final size:39
Alignment explanation
Indices: 47700063--47700191 Score: 152
Period size: 40 Copynumber: 3.2 Consensus size: 39
47700053 TGCTGGAAAT
* * *
47700063 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTGAC
* *
47700103 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTAT
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTGAC
* *
47700143 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGCGA-GTGAC
47700183 TATATCCGG
1 TATATCCGG
47700192 TTATATTCCG
Statistics
Matches: 78, Mismatches: 8, Indels: 6
0.85 0.09 0.07
Matches are distributed among these distances:
39 4 0.05
40 72 0.92
41 2 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGAC
Found at i:47716728 original size:24 final size:24
Alignment explanation
Indices: 47716696--47716796 Score: 175
Period size: 24 Copynumber: 4.2 Consensus size: 24
47716686 AAGTCTGTCA
*
47716696 GGAGAGGATTTAGGAGTTGATAAG
1 GGAGAGGATTTAGGAGCTGATAAG
47716720 GGAGAGGATTTAGGAGCTGATAAG
1 GGAGAGGATTTAGGAGCTGATAAG
47716744 GGAGAGGATTTAGGAGCTGATAAG
1 GGAGAGGATTTAGGAGCTGATAAG
* *
47716768 GGAGAGGATTTAGGAGATGATTAG
1 GGAGAGGATTTAGGAGCTGATAAG
47716792 GGAGA
1 GGAGA
47716797 ACAATGTTGG
Statistics
Matches: 74, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 74 1.00
ACGTcount: A:0.34, C:0.02, G:0.43, T:0.22
Consensus pattern (24 bp):
GGAGAGGATTTAGGAGCTGATAAG
Found at i:47716735 original size:12 final size:12
Alignment explanation
Indices: 47716695--47716789 Score: 52
Period size: 12 Copynumber: 7.9 Consensus size: 12
47716685 AAAGTCTGTC
47716695 AGGAGAGGATTT
1 AGGAGAGGATTT
** *
47716707 AGGAGTTGA-TA
1 AGGAGAGGATTT
47716718 AGGGAGAGGATTT
1 A-GGAGAGGATTT
** *
47716731 AGGAGCTGA-TA
1 AGGAGAGGATTT
47716742 AGGGAGAGGATTT
1 A-GGAGAGGATTT
** *
47716755 AGGAGCTGA-TA
1 AGGAGAGGATTT
47716766 AGGGAGAGGATTT
1 A-GGAGAGGATTT
*
47716779 AGGAGATGATT
1 AGGAGAGGATT
47716790 AGGGAGAACA
Statistics
Matches: 58, Mismatches: 19, Indels: 12
0.65 0.21 0.13
Matches are distributed among these distances:
11 6 0.10
12 46 0.79
13 6 0.10
ACGTcount: A:0.34, C:0.02, G:0.41, T:0.23
Consensus pattern (12 bp):
AGGAGAGGATTT
Found at i:47717771 original size:8 final size:8
Alignment explanation
Indices: 47717758--47717789 Score: 55
Period size: 8 Copynumber: 4.0 Consensus size: 8
47717748 CTAGATCGGC
47717758 AAAAGCCG
1 AAAAGCCG
47717766 AAAAGCCG
1 AAAAGCCG
*
47717774 AAATGCCG
1 AAAAGCCG
47717782 AAAAGCCG
1 AAAAGCCG
47717790 GTATTTTGAG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.47, C:0.25, G:0.25, T:0.03
Consensus pattern (8 bp):
AAAAGCCG
Found at i:47718244 original size:27 final size:26
Alignment explanation
Indices: 47718204--47718314 Score: 159
Period size: 27 Copynumber: 4.2 Consensus size: 26
47718194 AGGAAGCGTC
* *
47718204 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGTT
47718231 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGTT
47718258 CTGGTGGCTCTGCCACAATTATCTGTT
1 CTGGTGGCTCTGCCAC-ATTATCTGTT
* *
47718285 CTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTCTGCCACATTATCTGTT
47718311 CTGG
1 CTGG
47718315 CAGCCATCCT
Statistics
Matches: 78, Mismatches: 4, Indels: 5
0.90 0.05 0.06
Matches are distributed among these distances:
26 16 0.21
27 60 0.77
28 2 0.03
ACGTcount: A:0.16, C:0.24, G:0.23, T:0.37
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGTT
Found at i:47718288 original size:54 final size:53
Alignment explanation
Indices: 47718204--47718314 Score: 177
Period size: 54 Copynumber: 2.1 Consensus size: 53
47718194 AGGAAGCGTC
*
47718204 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACAT-TATCTGTT
* * *
47718258 CTGGTGGCTCTGCCACAATTATCTGTTCTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATTATCTGTT
47718311 CTGG
1 CTGG
47718315 CAGCCATCCT
Statistics
Matches: 53, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
53 12 0.23
54 41 0.77
ACGTcount: A:0.16, C:0.24, G:0.23, T:0.37
Consensus pattern (53 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATTATCTGTT
Found at i:47723692 original size:30 final size:29
Alignment explanation
Indices: 47723598--47723699 Score: 109
Period size: 28 Copynumber: 3.5 Consensus size: 29
47723588 TATAGTGAAT
* * *
47723598 CCGCACACTTAGTGCTATATATTTTCAGC
1 CCGCACACTTAGTGCTATAAATTTTAAAC
* *
47723627 TCGCACACTTAGTGCTATAGAA--TCAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
* *
47723655 TCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
47723685 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
47723700 CAATCTTGTC
Statistics
Matches: 61, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
28 23 0.38
29 18 0.30
30 20 0.33
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.29
Consensus pattern (29 bp):
CCGCACACTTAGTGCTATAAATTTTAAAC
Found at i:47727617 original size:24 final size:24
Alignment explanation
Indices: 47727585--47727661 Score: 127
Period size: 24 Copynumber: 3.2 Consensus size: 24
47727575 AAGTCTGTCA
* *
47727585 GGAGGGGATTTAGGAGTTGATAAG
1 GGAGAGGATTTAGGAGCTGATAAG
47727609 GGAGAGGATTTAGGAGCTGATAAG
1 GGAGAGGATTTAGGAGCTGATAAG
*
47727633 GGAGAGGATTTAGGAGCTGATTAG
1 GGAGAGGATTTAGGAGCTGATAAG
47727657 GGAGA
1 GGAGA
47727662 ACAGTATTGG
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 50 1.00
ACGTcount: A:0.31, C:0.03, G:0.44, T:0.22
Consensus pattern (24 bp):
GGAGAGGATTTAGGAGCTGATAAG
Found at i:47729101 original size:27 final size:27
Alignment explanation
Indices: 47729062--47729171 Score: 134
Period size: 27 Copynumber: 4.1 Consensus size: 27
47729052 GGAAGCGTCT
* *
47729062 TGGTGGCTATGCCACAATTATCTGATC
1 TGGTGGCTCTGCCACAATTATCTGTTC
47729089 TGGTGGCTCTGCCACATATT-TCTGTTC
1 TGGTGGCTCTGCCACA-ATTATCTGTTC
**
47729116 TGGTGGCTCTGCCATGATTATCTGTTC
1 TGGTGGCTCTGCCACAATTATCTGTTC
* * *
47729143 TGGTGACTCTGTCAC-ATTATTTGTTC
1 TGGTGGCTCTGCCACAATTATCTGTTC
47729169 TGG
1 TGG
47729172 CAGCCATGCT
Statistics
Matches: 73, Mismatches: 8, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
26 16 0.22
27 54 0.74
28 3 0.04
ACGTcount: A:0.15, C:0.22, G:0.24, T:0.40
Consensus pattern (27 bp):
TGGTGGCTCTGCCACAATTATCTGTTC
Found at i:47735413 original size:120 final size:121
Alignment explanation
Indices: 47735263--47735483 Score: 329
Period size: 122 Copynumber: 1.8 Consensus size: 121
47735253 AATAACAATA
* * *
47735263 AGAATGAGAATAGAAATGTAATGGGTATGAGGTTTTCCTAAT-CTTAATTTAACATTG-AATGTA
1 AGAATAAGAATAGAAATGTAATGGGTATGAGGTGTTCCTAATACTTAATTTAACA-CGAAATGTA
*
47735326 TGATAACTAACCTAGGAATGTAAATTAAATGATAGACATTAGCATGGTAATAGCATG
65 TGATAACTAACCTAAGAATGTAAATTAAATGATAGACATTAGCATGGTAATAGCATG
* * * * *
47735383 AGAATAAGCATAGTAATGTCATGGTTATGAGGTGTTCCTAATAACTTGATTTAACACGAAATGTA
1 AGAATAAGAATAGAAATGTAATGGGTATGAGGTGTTCCTAAT-ACTTAATTTAACACGAAATGTA
47735448 TGATAACTAACCTAAGAATGTAAATTAAATGATAGA
65 TGATAACTAACCTAAGAATGTAAATTAAATGATAGA
47735484 AAAATGAAAA
Statistics
Matches: 89, Mismatches: 9, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
120 36 0.40
121 1 0.01
122 52 0.58
ACGTcount: A:0.41, C:0.09, G:0.19, T:0.31
Consensus pattern (121 bp):
AGAATAAGAATAGAAATGTAATGGGTATGAGGTGTTCCTAATACTTAATTTAACACGAAATGTAT
GATAACTAACCTAAGAATGTAAATTAAATGATAGACATTAGCATGGTAATAGCATG
Found at i:47742564 original size:15 final size:13
Alignment explanation
Indices: 47742533--47742563 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
47742523 TAAGCAATCG
*
47742533 CACACGGGTGTGT
1 CACACGGGCGTGT
47742546 CACACGGGCGTGT
1 CACACGGGCGTGT
47742559 CACAC
1 CACAC
47742564 AAGGGTGTCC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.19, C:0.32, G:0.32, T:0.16
Consensus pattern (13 bp):
CACACGGGCGTGT
Found at i:47745226 original size:27 final size:28
Alignment explanation
Indices: 47745170--47745239 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
47745160 AAACTTGTAC
47745170 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
47745198 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
47745225 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
47745240 GACTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:47745250 original size:27 final size:27
Alignment explanation
Indices: 47745170--47745251 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
47745160 AAACTTGTAC
* *
47745170 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
47745198 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
47745225 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
47745252 GCTTTTGAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
26 1 0.02
27 30 0.61
28 18 0.37
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:47751938 original size:40 final size:40
Alignment explanation
Indices: 47751893--47752022 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
47751883 CGGAATACAA
47751893 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* * *
47751933 CCGGATAGAACGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * * *
47751973 CCGGATGTAGCCGCTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
47752013 CCGGATATAA
1 CCGGATATAA
47752023 TTTCCAGCAT
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 3 0.04
40 74 0.96
ACGTcount: A:0.23, C:0.29, G:0.25, T:0.22
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:47759978 original size:40 final size:40
Alignment explanation
Indices: 47759912--47760037 Score: 161
Period size: 40 Copynumber: 3.2 Consensus size: 40
47759902 CGGAATACAA
47759912 CCGGATA-TAACCACGT-GCACAATGCCTTCGGGTCTTAGC
1 CCGGATAGTAACCAC-TAGCACAATGCCTTCGGGTCTTAGC
* *
47759951 CCGGATAG-AACGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATAGTAACCACTAGCAC-AATGCCTTCGGGTCTTAGC
* *
47759991 CCGGAT-GTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATAGTAACCACTAGCACAA-TGCCTTCGGGTCTTAGC
47760031 CCGGATA
1 CCGGATA
47760038 TAATTTCCAG
Statistics
Matches: 76, Mismatches: 5, Indels: 10
0.84 0.05 0.11
Matches are distributed among these distances:
38 1 0.01
39 19 0.25
40 56 0.74
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (40 bp):
CCGGATAGTAACCACTAGCACAATGCCTTCGGGTCTTAGC
Found at i:47766925 original size:17 final size:18
Alignment explanation
Indices: 47766883--47766931 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
47766873 AGTTGAAAAG
47766883 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
47766902 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
47766919 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
47766932 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:47767877 original size:39 final size:39
Alignment explanation
Indices: 47767754--47767919 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 39
47767744 AAATTGAATG
* * **
47767754 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTG-GAAATT
1 ATATCCGGGCTAAGACCCGAAGGC-ATTGTGC-GAGTGATT
* * *
47767793 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTGATT
* *
47767833 ATATCCGGGCTAAG-GCCGAAGGCATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTGATT
*
47767872 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCA-TTGTGCGA-GTGATT
47767912 ATATCCGG
1 ATATCCGG
47767920 TTATATTCCG
Statistics
Matches: 105, Mismatches: 16, Indels: 11
0.80 0.12 0.08
Matches are distributed among these distances:
38 3 0.03
39 44 0.42
40 56 0.53
41 2 0.02
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGATT
Found at i:47771183 original size:29 final size:27
Alignment explanation
Indices: 47771149--47771220 Score: 101
Period size: 29 Copynumber: 2.6 Consensus size: 27
47771139 TATAGTGAAT
*
47771149 CCGCACACTTAGTGCTATATACATTC-AG
1 CCGCACACTTAGTGCTATATA-A-TCAAA
47771177 CTCGCACACTTAGTGCTATATAATCAAA
1 C-CGCACACTTAGTGCTATATAATCAAA
47771205 CCGCACACTTAGTGCT
1 CCGCACACTTAGTGCT
47771221 GTACAATTTT
Statistics
Matches: 41, Mismatches: 1, Indels: 5
0.87 0.02 0.11
Matches are distributed among these distances:
27 17 0.41
28 4 0.10
29 20 0.49
ACGTcount: A:0.29, C:0.29, G:0.14, T:0.28
Consensus pattern (27 bp):
CCGCACACTTAGTGCTATATAATCAAA
Found at i:47771241 original size:30 final size:27
Alignment explanation
Indices: 47771149--47771227 Score: 88
Period size: 27 Copynumber: 2.9 Consensus size: 27
47771139 TATAGTGAAT
* *
47771149 CCGCACACTTAGTGCTATATACATTC-AG
1 CCGCACACTTAGTGC--TATACAATCAAA
*
47771177 CTCGCACACTTAGTGCTATATAATCAAA
1 C-CGCACACTTAGTGCTATACAATCAAA
*
47771205 CCGCACACTTAGTGCTGTACAAT
1 CCGCACACTTAGTGCTATACAAT
47771228 TTTAAACCCG
Statistics
Matches: 44, Mismatches: 5, Indels: 5
0.81 0.09 0.09
Matches are distributed among these distances:
27 27 0.61
28 3 0.07
29 14 0.32
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.28
Consensus pattern (27 bp):
CCGCACACTTAGTGCTATACAATCAAA
Found at i:47775490 original size:46 final size:46
Alignment explanation
Indices: 47775387--47775508 Score: 140
Period size: 46 Copynumber: 2.6 Consensus size: 46
47775377 GTAAGGTGCG
47775387 GATGCCATGTCCCAGACATGGTCTTACACTGACTATCATCTCGTAGCC
1 GATG-CATGTCCCAGACAT-GTCTTACACTGACTATCATCTCGTAGCC
* * * * * *
47775435 AATGTATGTCCCAGACATGTCTTACACTGGCT-TACGTCTTG-AGGCT
1 GATGCATGTCCCAGACATGTCTTACACTGACTAT-CATCTCGTA-GCC
47775481 GATGCATGTCCCAGACATGTCTTACACT
1 GATGCATGTCCCAGACATGTCTTACACT
47775509 AGCCCACAAA
Statistics
Matches: 64, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
45 2 0.03
46 46 0.72
47 13 0.20
48 3 0.05
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.30
Consensus pattern (46 bp):
GATGCATGTCCCAGACATGTCTTACACTGACTATCATCTCGTAGCC
Found at i:47777058 original size:691 final size:691
Alignment explanation
Indices: 47775731--47777121 Score: 2701
Period size: 691 Copynumber: 2.0 Consensus size: 691
47775721 GCAACTAGTC
* *
47775731 AATTTAGTCGTTTTGCTTAGATTTTCGCCGATCTAGGCTTAAAGTCGATATTTCTTGATCTATAA
1 AATTTTGTCGTTTTGCTTAGATTTCCGCCGATCTAGGCTTAAAGTCGATATTTCTTGATCTATAA
*
47775796 TATCAAAACGCATTCATTTAATCACTAAATAAATTTAAGCAAGTAAAAATTCACATCTTCGATAA
66 TATCAAAACGCACTCATTTAATCACTAAATAAATTTAAGCAAGTAAAAATTCACATCTTCGATAA
47775861 AATGACCATTTTGCCCCTATACTTTGGCAAAATGACCATTTTACCCGTATGCTTGAAAATCAAAT
131 AATGACCATTTTGCCCCTATACTTTGGCAAAATGACCATTTTACCCGTATGCTTGAAAATCAAAT
47775926 TTTATTGAATTTATTCACATCTTAAGCCTAGATGAACTCTTTTTACTCTTATTTCAACCCCAAAT
196 TTTATTGAATTTATTCACATCTTAAGCCTAGATGAACTCTTTTTACTCTTATTTCAACCCCAAAT
47775991 ACTCTCTATTTCACACATTTATCATTCATTTTACAACTTGTGCAAAATAGTCCCTTTAGGTGCTT
261 ACTCTCTATTTCACACATTTATCATTCATTTTACAACTTGTGCAAAATAGTCCCTTTAGGTGCTT
47776056 TCATGGTAACACCTTTCACAAAAGTTGTCTATTACACAACTAAGACTCATATTCTTGCATAAAAT
326 TCATGGTAACACCTTTCACAAAAGTTGTCTATTACACAACTAAGACTCATATTCTTGCATAAAAT
47776121 TTTAGAAAACTCCCTAAATTCTCTCATGGAAAAACCCTATACTTTCAACCATTTTGCATGATACT
391 TTTAGAAAACTCCCTAAATTCTCTCATGGAAAAACCCTATACTTTCAACCATTTTGCATGATACT
47776186 CCCCTCATTTGAAAGCTCATGCTTCAAGGGTCTTAAAAATGCAAAAATCATCAACAAAGGGTATG
456 CCCCTCATTTGAAAGCTCATGCTTCAAGGGTCTTAAAAATGCAAAAATCATCAACAAAGGGTATG
47776251 GAAATCACTTACTTCTGAGTGCTTCAAGTTGCTAAAAATTTTAAGCTCTCAAACCACCCTTCAAT
521 GAAATCACTTACTTCTGAGTGCTTCAAGTTGCTAAAAATTTTAAGCTCTCAAACCACCCTTCAAT
*
47776316 GGCTAATTTTTGGTGGAGAAAAGAGATGAGAAAGGGATGATATCATCCTTCTTTTATTTATTTAT
586 GGCTAATATTTGGTGGAGAAAAGAGATGAGAAAGGGATGATATCATCCTTCTTTTATTTATTTAT
*
47776381 ATTTTAGTCAAAATAAGTCACCTGGCCTACCAAATTTTGAA
651 ATTTTAGTCAAAATAAGTCACCTGACCTACCAAATTTTGAA
*
47776422 AATTTTGTCGTTTTGCTTAGATTTCCGCCGGTCTAGGCTTAAAGTCGATATTTCTTGATCTATAA
1 AATTTTGTCGTTTTGCTTAGATTTCCGCCGATCTAGGCTTAAAGTCGATATTTCTTGATCTATAA
*
47776487 TATCAAAACGCACTCATTTAATCACTAAATAAATTTAAGCAAGTAAAAATTCACATCTTCGGTAA
66 TATCAAAACGCACTCATTTAATCACTAAATAAATTTAAGCAAGTAAAAATTCACATCTTCGATAA
47776552 AATGACCATTTTGCCCCTATACTTTGGCAAAATGACCATTTTACCCGTATGCTTGAAAATCAAAT
131 AATGACCATTTTGCCCCTATACTTTGGCAAAATGACCATTTTACCCGTATGCTTGAAAATCAAAT
47776617 TTTATTGAATTTATTCACATCTTAAGCCTAGATGAACTCTTTTTACTCTTATTTCAACCCCAAAT
196 TTTATTGAATTTATTCACATCTTAAGCCTAGATGAACTCTTTTTACTCTTATTTCAACCCCAAAT
* *
47776682 ACTCTCTATTTCACACATTTATCATTCATTTTACTACTTGTGCAAAATAGTCCCTTTAGGTGTTT
261 ACTCTCTATTTCACACATTTATCATTCATTTTACAACTTGTGCAAAATAGTCCCTTTAGGTGCTT
47776747 TCATGGTAACACCTTTCACAAAAGTTGTCTATTACACAACTAAGACTCATATTCTTGCATAAAAT
326 TCATGGTAACACCTTTCACAAAAGTTGTCTATTACACAACTAAGACTCATATTCTTGCATAAAAT
47776812 TTTAGAAAACTCCCTAAATTCTCTCATGGAAAAACCCTATACTTTCAACCATTTTGCATGATACT
391 TTTAGAAAACTCCCTAAATTCTCTCATGGAAAAACCCTATACTTTCAACCATTTTGCATGATACT
47776877 CCCCTCATTTGAAAGCTCATGCTTCAAGGGTCTTAAAAATGCAAAAATCATCAACAAAGGGTATG
456 CCCCTCATTTGAAAGCTCATGCTTCAAGGGTCTTAAAAATGCAAAAATCATCAACAAAGGGTATG
47776942 GAAATCACTTACTTCTGAGTGCTTCAAGTTGCTAAAAATTTTAAGCTCTCAAACCACCCTTCAAT
521 GAAATCACTTACTTCTGAGTGCTTCAAGTTGCTAAAAATTTTAAGCTCTCAAACCACCCTTCAAT
47777007 GGCTAATATTTGGTGGAGAAAAGAGATGAGAAAGGGATGATATCATCCTTCTTTTATTTATTTAT
586 GGCTAATATTTGGTGGAGAAAAGAGATGAGAAAGGGATGATATCATCCTTCTTTTATTTATTTAT
47777072 ATTTTAGTCAAAATAAGTCACCTGACCTACCAAATTTTGAA
651 ATTTTAGTCAAAATAAGTCACCTGACCTACCAAATTTTGAA
47777113 AATTTTGTC
1 AATTTTGTC
47777122 TCCACTTTGA
Statistics
Matches: 691, Mismatches: 9, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
691 691 1.00
ACGTcount: A:0.33, C:0.20, G:0.12, T:0.35
Consensus pattern (691 bp):
AATTTTGTCGTTTTGCTTAGATTTCCGCCGATCTAGGCTTAAAGTCGATATTTCTTGATCTATAA
TATCAAAACGCACTCATTTAATCACTAAATAAATTTAAGCAAGTAAAAATTCACATCTTCGATAA
AATGACCATTTTGCCCCTATACTTTGGCAAAATGACCATTTTACCCGTATGCTTGAAAATCAAAT
TTTATTGAATTTATTCACATCTTAAGCCTAGATGAACTCTTTTTACTCTTATTTCAACCCCAAAT
ACTCTCTATTTCACACATTTATCATTCATTTTACAACTTGTGCAAAATAGTCCCTTTAGGTGCTT
TCATGGTAACACCTTTCACAAAAGTTGTCTATTACACAACTAAGACTCATATTCTTGCATAAAAT
TTTAGAAAACTCCCTAAATTCTCTCATGGAAAAACCCTATACTTTCAACCATTTTGCATGATACT
CCCCTCATTTGAAAGCTCATGCTTCAAGGGTCTTAAAAATGCAAAAATCATCAACAAAGGGTATG
GAAATCACTTACTTCTGAGTGCTTCAAGTTGCTAAAAATTTTAAGCTCTCAAACCACCCTTCAAT
GGCTAATATTTGGTGGAGAAAAGAGATGAGAAAGGGATGATATCATCCTTCTTTTATTTATTTAT
ATTTTAGTCAAAATAAGTCACCTGACCTACCAAATTTTGAA
Found at i:47778832 original size:43 final size:42
Alignment explanation
Indices: 47778743--47778850 Score: 114
Period size: 43 Copynumber: 2.5 Consensus size: 42
47778733 TGTGACTACG
* * *
47778743 TGTAAGACCATATCTGGGATATGGCATCGATATGAGACTTCG
1 TGTAAGACCATATCTGGGATATGGCATAGATACGAGACTTCA
47778785 TGTAAGACCATAGT-T-GGACTATTGGCATAGATACGAGA-TTACA
1 TGTAAGACCATA-TCTGGGA-TA-TGGCATAGATACGAGACTT-CA
* *
47778828 TGTAAGACCATATCCGAGATATG
1 TGTAAGACCATATCTGGGATATG
47778851 ACATTGGTAC
Statistics
Matches: 55, Mismatches: 5, Indels: 12
0.76 0.07 0.17
Matches are distributed among these distances:
41 3 0.05
42 20 0.36
43 30 0.55
44 2 0.04
ACGTcount: A:0.32, C:0.16, G:0.24, T:0.28
Consensus pattern (42 bp):
TGTAAGACCATATCTGGGATATGGCATAGATACGAGACTTCA
Found at i:47780915 original size:27 final size:27
Alignment explanation
Indices: 47780877--47780943 Score: 89
Period size: 27 Copynumber: 2.5 Consensus size: 27
47780867 TTGCAAGTTG
* *
47780877 GGTTCGCTAGTTGGTTTGGCGAGCTAT
1 GGTTCGCCAGTTGGTTTGGCGAGCTAA
* * *
47780904 GGTTCTCCAGTTGGTTTGGTGAGTTAA
1 GGTTCGCCAGTTGGTTTGGCGAGCTAA
47780931 GGTTCGCCAGTTG
1 GGTTCGCCAGTTG
47780944 AGTTACGAAC
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.12, C:0.15, G:0.36, T:0.37
Consensus pattern (27 bp):
GGTTCGCCAGTTGGTTTGGCGAGCTAA
Found at i:47783942 original size:51 final size:51
Alignment explanation
Indices: 47783881--47784013 Score: 223
Period size: 51 Copynumber: 2.6 Consensus size: 51
47783871 GGTTTTGCTT
47783881 GATAGCTATCATCATTTCTAATGTCTTTTTA-CAGGGAACATCACCAATATC
1 GATAGCTATCATCATTTCTAATGTCTTTTTATCA-GGAACATCACCAATATC
*
47783932 GATAGCTATCATTATTTCTAATGTCTTTTTATCAGGAACATCACCAATATC
1 GATAGCTATCATCATTTCTAATGTCTTTTTATCAGGAACATCACCAATATC
* *
47783983 GATAGTTATCATCATATCTAATGTCTTTTTA
1 GATAGCTATCATCATTTCTAATGTCTTTTTA
47784014 GGGCCTCAAG
Statistics
Matches: 77, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
51 75 0.97
52 2 0.03
ACGTcount: A:0.31, C:0.19, G:0.11, T:0.40
Consensus pattern (51 bp):
GATAGCTATCATCATTTCTAATGTCTTTTTATCAGGAACATCACCAATATC
Found at i:47788227 original size:16 final size:17
Alignment explanation
Indices: 47788206--47788238 Score: 59
Period size: 16 Copynumber: 2.0 Consensus size: 17
47788196 ACAATAGGGT
47788206 TAAAAATAT-AATTTTG
1 TAAAAATATGAATTTTG
47788222 TAAAAATATGAATTTTG
1 TAAAAATATGAATTTTG
47788239 GATTGAATTG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 9 0.56
17 7 0.44
ACGTcount: A:0.48, C:0.00, G:0.09, T:0.42
Consensus pattern (17 bp):
TAAAAATATGAATTTTG
Found at i:47791601 original size:42 final size:42
Alignment explanation
Indices: 47791542--47791664 Score: 142
Period size: 42 Copynumber: 2.9 Consensus size: 42
47791532 CAGTTACAAC
47791542 TGAGATTACGTGTAAGACCATATCTAGGATATGGCATTGATA
1 TGAGATTACGTGTAAGACCATATCTAGGATATGGCATTGATA
* * * * *
47791584 TGAGACTT-CGTGTAAGA-CATAGCTGGGCTATTAGCATCGATA
1 TGAGA-TTACGTGTAAGACCATATCTAGGATA-TGGCATTGATA
* * *
47791626 TGAGATTGCATGTAAGACCATATCTAGAATATGGCATTG
1 TGAGATTACGTGTAAGACCATATCTAGGATATGGCATTG
47791665 GTACAGTACT
Statistics
Matches: 65, Mismatches: 12, Indels: 8
0.76 0.14 0.09
Matches are distributed among these distances:
41 12 0.18
42 42 0.65
43 11 0.17
ACGTcount: A:0.32, C:0.14, G:0.24, T:0.30
Consensus pattern (42 bp):
TGAGATTACGTGTAAGACCATATCTAGGATATGGCATTGATA
Found at i:47804498 original size:32 final size:32
Alignment explanation
Indices: 47804457--47804520 Score: 119
Period size: 32 Copynumber: 2.0 Consensus size: 32
47804447 TAGCAAAGGT
47804457 ATGGTTTTATTTTGTTCGCTACAGTTTGATGC
1 ATGGTTTTATTTTGTTCGCTACAGTTTGATGC
*
47804489 ATGGTTTTATTTTGTTCGCTATAGTTTGATGC
1 ATGGTTTTATTTTGTTCGCTACAGTTTGATGC
47804521 CTATCTCACA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.16, C:0.11, G:0.22, T:0.52
Consensus pattern (32 bp):
ATGGTTTTATTTTGTTCGCTACAGTTTGATGC
Found at i:47805642 original size:46 final size:46
Alignment explanation
Indices: 47805567--47805731 Score: 235
Period size: 46 Copynumber: 3.5 Consensus size: 46
47805557 TGCTTTATCA
* *
47805567 TATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTT
1 TATAACTGG-GGCATAAGCC-C-TTTAATAACTGGGGCATAAGCCCTTT
47805615 TAATAACT-GGGCATAAGCCCTTTAATAACTGGGGCATAAGCCCTTT
1 T-ATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCCCTTT
*
47805661 TATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTT
1 TATAACTGGGGCATAAGCCC-TTTAATAACTGGGGCATAAGCCCTTT
47805708 TGATAACTGGGGCATAAGCCCTTT
1 T-ATAACTGGGGCATAAGCCCTTT
47805732 TGCACTTCCT
Statistics
Matches: 109, Mismatches: 3, Indels: 11
0.89 0.02 0.09
Matches are distributed among these distances:
45 6 0.06
46 38 0.35
47 34 0.31
48 25 0.23
49 6 0.06
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (46 bp):
TATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCCCTTT
Found at i:47805733 original size:24 final size:24
Alignment explanation
Indices: 47805568--47805732 Score: 248
Period size: 24 Copynumber: 7.0 Consensus size: 24
47805558 GCTTTATCAT
*
47805568 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
47805593 ATAACTGGGGCAAAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
47805617 ATAACT-GGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
47805639 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
*
47805662 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
47805686 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
47805710 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
47805733 GCACTTCCTT
Statistics
Matches: 133, Mismatches: 3, Indels: 9
0.92 0.02 0.06
Matches are distributed among these distances:
22 10 0.08
23 46 0.35
24 65 0.49
25 12 0.09
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:47805806 original size:20 final size:20
Alignment explanation
Indices: 47805778--47805828 Score: 93
Period size: 20 Copynumber: 2.5 Consensus size: 20
47805768 GCATTTATGA
*
47805778 ACATCTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
47805798 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
47805818 ACATATCATGT
1 ACATATCATGT
47805829 TTATCAAAAT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.33, C:0.22, G:0.10, T:0.35
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:47813680 original size:24 final size:24
Alignment explanation
Indices: 47813629--47813793 Score: 248
Period size: 23 Copynumber: 7.0 Consensus size: 24
47813619 GCTTTATCAT
*
47813629 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
47813654 ATAACTGGGGCAAAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
47813678 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
47813701 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
47813725 ATAACTGGGGCATAAGCCC-TTTG
1 ATAACTGGGGCATAAGCCCTTTTA
47813748 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
47813771 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
47813794 GCACTTCCTC
Statistics
Matches: 132, Mismatches: 5, Indels: 7
0.92 0.03 0.05
Matches are distributed among these distances:
23 68 0.52
24 52 0.39
25 12 0.09
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:47813704 original size:47 final size:47
Alignment explanation
Indices: 47813650--47813792 Score: 252
Period size: 47 Copynumber: 3.1 Consensus size: 47
47813640 CCTAGCCTCT
*
47813650 TTTAATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
*
47813697 TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
*
47813744 TTTGATAACTGGGGCATAAGCCC-TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
47813790 TTT
1 TTT
47813793 TGCACTTCCT
Statistics
Matches: 92, Mismatches: 4, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
46 25 0.27
47 67 0.73
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.28
Consensus pattern (47 bp):
TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
Found at i:47813884 original size:19 final size:20
Alignment explanation
Indices: 47813838--47813885 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 20
47813828 GCATTTATGA
*
47813838 ACATCTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
47813858 ACATATCATGTGCATA-CAT
1 ACATATCATGTGCATATCAT
47813877 -CAATATCAT
1 AC-ATATCAT
47813886 ACATCATGTT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
18 1 0.04
19 10 0.38
20 15 0.58
ACGTcount: A:0.35, C:0.23, G:0.08, T:0.33
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:47816899 original size:28 final size:29
Alignment explanation
Indices: 47816832--47816932 Score: 125
Period size: 28 Copynumber: 3.5 Consensus size: 29
47816822 ATAGTGAATC
*
47816832 CGCACACTTAGTGCTATATACATTC-AGCT
1 CGCACACTTAGTGCTATATA-ATTCAAACT
47816861 CGCACACTTAGTGCTATATAA-TCAAACT
1 CGCACACTTAGTGCTATATAATTCAAACT
* * * *
47816889 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA-TTCAAACT
47816919 CGCACACTTAGTGC
1 CGCACACTTAGTGC
47816933 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 2 0.03
28 23 0.36
29 20 0.31
30 19 0.30
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATAATTCAAACT
Found at i:47817412 original size:2 final size:2
Alignment explanation
Indices: 47817405--47817440 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
47817395 TAATGGCCGA
47817405 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
47817441 GTGTGTACAA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:47818533 original size:43 final size:43
Alignment explanation
Indices: 47818472--47818637 Score: 158
Period size: 43 Copynumber: 3.9 Consensus size: 43
47818462 GGATGTCACA
* *
47818472 TGTGATTACATGTAAGACCTTGTCTGGGACATTGGCATTGTAT
1 TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTAT
* *
47818515 TGTGATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTTAA
1 TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCG-TAT
* *** * * * *
47818559 T-CGATTTTGTGTAAGACCTTGTTTGGGAGAGTGGCATCG-AT
1 TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTAT
* * *
47818600 ATGTGATAACATGTAAGACCATATCTGGGATA-TGGCAT
1 -TGTGATTACATGTAAGACCATGTCTGGGACATTGGCAT
47818638 TGTACGAGTT
Statistics
Matches: 99, Mismatches: 21, Indels: 7
0.78 0.17 0.06
Matches are distributed among these distances:
41 1 0.01
42 7 0.07
43 88 0.89
44 3 0.03
ACGTcount: A:0.25, C:0.14, G:0.27, T:0.34
Consensus pattern (43 bp):
TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTAT
Found at i:47818915 original size:16 final size:17
Alignment explanation
Indices: 47818884--47818916 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
47818874 GATATGCAAA
47818884 TATTTATATGATGGCTT
1 TATTTATATGATGGCTT
*
47818901 TATTTGTAT-ATGGCTT
1 TATTTATATGATGGCTT
47818917 ACTAAGCTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.21, C:0.06, G:0.18, T:0.55
Consensus pattern (17 bp):
TATTTATATGATGGCTT
Found at i:47820566 original size:40 final size:40
Alignment explanation
Indices: 47820521--47820649 Score: 140
Period size: 40 Copynumber: 3.2 Consensus size: 40
47820511 GGAATATAAT
47820521 CGGATATAAGCATGTGCACAAATGCCTTCGGGTCTTAGCC
1 CGGATATAAGCATGTGCACAAATGCCTTCGGGTCTTAGCC
* * *
47820561 CGGATAGAATG-ACT-CGCACGAATGCCTTCGGGTCTTAGCC
1 CGGATATAA-GCA-TGTGCACAAATGCCTTCGGGTCTTAGCC
* * *
47820601 CGGATAT-AGC-CGCTAGCACAATTGCCTTCGGGTCTTAACC
1 CGGATATAAGCATG-T-GCACAAATGCCTTCGGGTCTTAGCC
47820641 CGGATATAA
1 CGGATATAA
47820650 TTTCCAGCAT
Statistics
Matches: 73, Mismatches: 9, Indels: 13
0.77 0.09 0.14
Matches are distributed among these distances:
38 1 0.01
39 1 0.01
40 68 0.93
41 3 0.04
ACGTcount: A:0.25, C:0.26, G:0.25, T:0.24
Consensus pattern (40 bp):
CGGATATAAGCATGTGCACAAATGCCTTCGGGTCTTAGCC
Found at i:47820664 original size:40 final size:40
Alignment explanation
Indices: 47820536--47820687 Score: 146
Period size: 40 Copynumber: 3.8 Consensus size: 40
47820526 ATAAGCATGT
* * *
47820536 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCAC-CA
** * *
47820576 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAGCCGCTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCACCA
* **
47820616 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCACCA
* * * *
47820656 GCATAATTGTCTTTGGGGCTTAGCCCGGATAT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
47820688 CATTCAATTT
Statistics
Matches: 92, Mismatches: 17, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
39 2 0.02
40 88 0.96
41 2 0.02
ACGTcount: A:0.22, C:0.26, G:0.24, T:0.27
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCACCA
Found at i:47828133 original size:6 final size:6
Alignment explanation
Indices: 47828122--47828150 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
47828112 AAATCTGCTA
47828122 AAAAAT AAAAAT AAAAAT AAAAAT AAAAA
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAAA
47828151 GTAGCTTTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.86, C:0.00, G:0.00, T:0.14
Consensus pattern (6 bp):
AAAAAT
Found at i:47829791 original size:31 final size:31
Alignment explanation
Indices: 47829753--47829816 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
47829743 CCTTTTCATG
* *
47829753 TTTCATATTTCATAACACTGGGCCGATGCCT
1 TTTCATATTTCATAACACTAGGCCGAAGCCT
**
47829784 TTTCATATTTCATATTACTAGGCCGAAGCCT
1 TTTCATATTTCATAACACTAGGCCGAAGCCT
47829815 TT
1 TT
47829817 ACTGTAGACG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.23, C:0.23, G:0.14, T:0.39
Consensus pattern (31 bp):
TTTCATATTTCATAACACTAGGCCGAAGCCT
Found at i:47830128 original size:50 final size:47
Alignment explanation
Indices: 47830013--47830132 Score: 150
Period size: 50 Copynumber: 2.4 Consensus size: 47
47830003 TTTATCATAT
* *
47830013 AACTGGAGGCCTAGCCTCTTTTAATAACTAGGGCAAAGCCCTTTTGAGA
1 AACTGG-GGCATAGCC-CTTTTAATAACTAGGGCAAAGCCCTTTTCAGA
* *
47830062 AACTGGGGCAAAAGCCCTTTTAATAAACTGGGGCAAAAGCCCTTTTCAGTA
1 AACTGGGGC-ATAGCCCTTTTAAT-AACTAGGGC-AAAGCCCTTTTCAG-A
47830113 AACTGGGGCATAGCCCTTTT
1 AACTGGGGCATAGCCCTTTT
47830133 TGCACTTCCT
Statistics
Matches: 62, Mismatches: 5, Indels: 7
0.84 0.07 0.09
Matches are distributed among these distances:
48 11 0.18
49 18 0.29
50 23 0.37
51 10 0.16
ACGTcount: A:0.29, C:0.23, G:0.23, T:0.26
Consensus pattern (47 bp):
AACTGGGGCATAGCCCTTTTAATAACTAGGGCAAAGCCCTTTTCAGA
Found at i:47830133 original size:26 final size:25
Alignment explanation
Indices: 47830025--47830132 Score: 125
Period size: 25 Copynumber: 4.4 Consensus size: 25
47830015 CTGGAGGCCT
* *
47830025 AGCCTCTTTTAAT-AACTAGGGC-AA
1 AGCC-CTTTTAGTAAACTGGGGCAAA
47830049 AGCCCTTTTGAG-AAACTGGGGCAAA
1 AGCCCTTTT-AGTAAACTGGGGCAAA
*
47830074 AGCCCTTTTAATAAACTGGGGCAAA
1 AGCCCTTTTAGTAAACTGGGGCAAA
*
47830099 AGCCCTTTTCAGTAAACTGGGGC-AT
1 AGCCCTTTT-AGTAAACTGGGGCAAA
47830124 AGCCCTTTT
1 AGCCCTTTT
47830133 TGCACTTCCT
Statistics
Matches: 74, Mismatches: 5, Indels: 9
0.84 0.06 0.10
Matches are distributed among these distances:
23 5 0.07
24 14 0.19
25 43 0.58
26 12 0.16
ACGTcount: A:0.30, C:0.22, G:0.21, T:0.27
Consensus pattern (25 bp):
AGCCCTTTTAGTAAACTGGGGCAAA
Found at i:47837220 original size:31 final size:31
Alignment explanation
Indices: 47837182--47837241 Score: 102
Period size: 31 Copynumber: 1.9 Consensus size: 31
47837172 TTCATGTTTC
47837182 ATATTTCATAACACTGGGCCGAAGCCTTTTT
1 ATATTTCATAACACTGGGCCGAAGCCTTTTT
**
47837213 ATATTTCATATTACTGGGCCGAAGCCTTT
1 ATATTTCATAACACTGGGCCGAAGCCTTT
47837242 ACTGTAGACG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.25, C:0.22, G:0.17, T:0.37
Consensus pattern (31 bp):
ATATTTCATAACACTGGGCCGAAGCCTTTTT
Found at i:47837490 original size:24 final size:24
Alignment explanation
Indices: 47837450--47837532 Score: 107
Period size: 25 Copynumber: 3.4 Consensus size: 24
47837440 CTGGAGGCCT
47837450 AGCCTCTTTTAAT-AACTAGGGC-AA
1 AGCC-CTTTTAATAAACT-GGGCAAA
*
47837474 AGCCCTTTTGATAAACTGGAGCAAA
1 AGCCCTTTTAATAAACTGG-GCAAA
47837499 AGCCCTTTTAATAAACTGAGGCAAA
1 AGCCCTTTTAATAAACTG-GGCAAA
47837524 AGCCCTTTT
1 AGCCCTTTT
47837533 CGGTAAATTG
Statistics
Matches: 53, Mismatches: 2, Indels: 7
0.85 0.03 0.11
Matches are distributed among these distances:
23 9 0.17
24 10 0.19
25 33 0.62
26 1 0.02
ACGTcount: A:0.34, C:0.22, G:0.17, T:0.28
Consensus pattern (24 bp):
AGCCCTTTTAATAAACTGGGCAAA
Found at i:47837553 original size:50 final size:48
Alignment explanation
Indices: 47837449--47837557 Score: 123
Period size: 50 Copynumber: 2.2 Consensus size: 48
47837439 ACTGGAGGCC
47837449 TAGCCTCTTTTAATAACTAGGGCAAAGCCCTTTTGATAAACTGGAGCAA
1 TAGCC-CTTTTAATAACTAGGGCAAAGCCCTTTTGATAAACTGGAGCAA
* * * *
47837498 AAGCCCTTTTAATAAACT-GAGGCAAAAGCCCTTTTCGGTAAATTGGGGC-A
1 TAGCCCTTTTAAT-AACTAG-GGC-AAAGCCCTTTT-GATAAACTGGAGCAA
47837548 TAGCCCTTTT
1 TAGCCCTTTT
47837558 TGCACTTCCT
Statistics
Matches: 51, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
48 9 0.18
49 11 0.22
50 21 0.41
51 10 0.20
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.29
Consensus pattern (48 bp):
TAGCCCTTTTAATAACTAGGGCAAAGCCCTTTTGATAAACTGGAGCAA
Found at i:47837628 original size:20 final size:20
Alignment explanation
Indices: 47837605--47837651 Score: 78
Period size: 20 Copynumber: 2.4 Consensus size: 20
47837595 TTATGAATAC
47837605 ATCATGTGCATATCATA-CA
1 ATCATGTGCATATCATATCA
47837624 TATCATGTGCATATCATATCA
1 -ATCATGTGCATATCATATCA
47837645 ATCATGT
1 ATCATGT
47837652 ATATCAAAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
20 24 0.92
21 2 0.08
ACGTcount: A:0.34, C:0.19, G:0.11, T:0.36
Consensus pattern (20 bp):
ATCATGTGCATATCATATCA
Found at i:47840539 original size:13 final size:13
Alignment explanation
Indices: 47840521--47840545 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
47840511 TGCGGGTTCA
47840521 CACGACCGTGTCG
1 CACGACCGTGTCG
47840534 CACGACCGTGTC
1 CACGACCGTGTC
47840546 TAGCTTCATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.40, G:0.28, T:0.16
Consensus pattern (13 bp):
CACGACCGTGTCG
Found at i:47845134 original size:2 final size:2
Alignment explanation
Indices: 47845127--47845159 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
47845117 TCATTTTCTG
47845127 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
47845160 GTTTTTGCCT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:47853502 original size:40 final size:40
Alignment explanation
Indices: 47853403--47853553 Score: 189
Period size: 40 Copynumber: 3.8 Consensus size: 40
47853393 TGGATGATAA
* * * * **
47853403 CCGGGCTAAGTCCCGAAGGCATCTGCGCTAGTGACTAGTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
47853443 CCGGGC-AAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
* *
47853482 CCGGGCTAAGTCCCAAAGGCATTTGTGCGAGTTACTCTAA-
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AAAT
* *
47853522 CCGGGCTATGTCCCGAAGGCATTTGAGCGAGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
47853554 AGCTATATCC
Statistics
Matches: 98, Mismatches: 11, Indels: 4
0.87 0.10 0.04
Matches are distributed among these distances:
39 33 0.34
40 63 0.64
41 2 0.02
ACGTcount: A:0.23, C:0.25, G:0.29, T:0.23
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
Found at i:47867929 original size:49 final size:50
Alignment explanation
Indices: 47867857--47868094 Score: 311
Period size: 49 Copynumber: 4.8 Consensus size: 50
47867847 TGAGGTCACG
*
47867857 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT-GGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATTAGGTCGCA
* * * * * *
47867906 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTGATAACTTCGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAA-TTAGGTCGCA
* ** *
47867957 TGTGTAGTACTAAGTGCAGGCTACTACGCGTATCAGATGGTTAGGTC-AA
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATTAGGTCGCA
* *
47868006 GTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT-GGTCGCA
1 -TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATTAGGTCGCA
*
47868056 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATA
47868095 GCTTTAGCTA
Statistics
Matches: 161, Mismatches: 24, Indels: 8
0.83 0.12 0.04
Matches are distributed among these distances:
49 77 0.48
50 45 0.28
51 39 0.24
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.29
Consensus pattern (50 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATTAGGTCGCA
Found at i:47870867 original size:16 final size:15
Alignment explanation
Indices: 47870829--47870867 Score: 60
Period size: 15 Copynumber: 2.5 Consensus size: 15
47870819 TGGATTCTCG
*
47870829 TATCATGGATTTCTT
1 TATCTTGGATTTCTT
47870844 TATCTTGGATTTCTT
1 TATCTTGGATTTCTT
47870859 TATTCTTGG
1 TA-TCTTGG
47870868 CTTCTCTGTT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
15 16 0.73
16 6 0.27
ACGTcount: A:0.15, C:0.13, G:0.15, T:0.56
Consensus pattern (15 bp):
TATCTTGGATTTCTT
Found at i:47873697 original size:49 final size:50
Alignment explanation
Indices: 47873617--47873862 Score: 325
Period size: 49 Copynumber: 4.9 Consensus size: 50
47873607 AGCTATTGTG
*
47873617 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * * *
47873667 -GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTGATAACTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-TT
* * * * **
47873717 CGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* *
47873767 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * *
47873817 -GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
47873863 GCTTCGGCTA
Statistics
Matches: 169, Mismatches: 25, Indels: 5
0.85 0.13 0.03
Matches are distributed among these distances:
49 83 0.49
50 48 0.28
51 38 0.22
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.28
Consensus pattern (50 bp):
AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
Found at i:47873754 original size:28 final size:28
Alignment explanation
Indices: 47873722--47873805 Score: 83
Period size: 28 Copynumber: 3.2 Consensus size: 28
47873712 AACTTCGATC
47873722 ACGTGTGTAGTACTAAGTGCAGGCTACT
1 ACGTGTGTAGTACTAAGTGCAGGCTACT
* * *
47873750 ACGTGTATCAG-A-T-GGT-TAGG-T-C-
1 ACGTGTGT-AGTACTAAGTGCAGGCTACT
47873772 ACGTGTGTAGTACTAAGTGCAGGCTACT
1 ACGTGTGTAGTACTAAGTGCAGGCTACT
47873800 ACGTGT
1 ACGTGT
47873806 ACCGGATAAT
Statistics
Matches: 42, Mismatches: 6, Indels: 16
0.66 0.09 0.25
Matches are distributed among these distances:
21 2 0.05
22 8 0.19
23 2 0.05
24 3 0.07
25 6 0.14
26 3 0.07
27 2 0.05
28 14 0.33
29 2 0.05
ACGTcount: A:0.24, C:0.17, G:0.30, T:0.30
Consensus pattern (28 bp):
ACGTGTGTAGTACTAAGTGCAGGCTACT
Found at i:47876183 original size:14 final size:14
Alignment explanation
Indices: 47876164--47876190 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
47876154 ATATTTAACT
47876164 TGTTCTTAATTATG
1 TGTTCTTAATTATG
47876178 TGTTCTTAATTAT
1 TGTTCTTAATTAT
47876191 TCTTTTGATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.22, C:0.07, G:0.11, T:0.59
Consensus pattern (14 bp):
TGTTCTTAATTATG
Found at i:47884702 original size:39 final size:39
Alignment explanation
Indices: 47884655--47884837 Score: 240
Period size: 39 Copynumber: 4.6 Consensus size: 39
47884645 AATGTTCGAG
47884655 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
*
47884694 TGATATCCGGGCTAAGCCCGAAGGCAATTGGGCGAGTTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* * *
47884733 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* ** *
47884772 TGATATCCGGGTTAAGTCCCGAAGGCCTTTGTGCGGGTTA
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTA
** * *
47884812 CCATAACCGGGCTATGTCCCGAAGGC
1 TGATATCCGGGCTAAG-CCCGAAGGC
47884838 GTTTGAACGA
Statistics
Matches: 126, Mismatches: 17, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
39 88 0.70
40 38 0.30
ACGTcount: A:0.24, C:0.22, G:0.31, T:0.23
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
Found at i:47892130 original size:39 final size:39
Alignment explanation
Indices: 47892083--47892265 Score: 240
Period size: 39 Copynumber: 4.6 Consensus size: 39
47892073 AATGTTCGAG
47892083 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
*
47892122 TGATATCCGGGCTAAGCCCGAAGGCAATTGGGCGAGTTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* * *
47892161 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* ** *
47892200 TGATATCCGGGTTAAGTCCCGAAGGCCTTTGTGCGGGTTA
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTA
** * *
47892240 CCATAACCGGGCTATGTCCCGAAGGC
1 TGATATCCGGGCTAAG-CCCGAAGGC
47892266 GTTTGAACGA
Statistics
Matches: 126, Mismatches: 17, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
39 88 0.70
40 38 0.30
ACGTcount: A:0.24, C:0.22, G:0.31, T:0.23
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
Found at i:47895229 original size:25 final size:24
Alignment explanation
Indices: 47895188--47895250 Score: 72
Period size: 25 Copynumber: 2.5 Consensus size: 24
47895178 GATTATGTAG
47895188 AAAGAATAAAGAAATGAAAAAAAAA
1 AAAGAA-AAAGAAATGAAAAAAAAA
* * *
47895213 AAAGAAAGAGAATATGAAGAAAAAC
1 AAAGAAAAAGAA-ATGAAAAAAAAA
*
47895238 AAAGAAAAGGAAA
1 AAAGAAAAAGAAA
47895251 AAAAAAGTGT
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
24 6 0.19
25 26 0.81
ACGTcount: A:0.75, C:0.02, G:0.17, T:0.06
Consensus pattern (24 bp):
AAAGAAAAAGAAATGAAAAAAAAA
Found at i:47896448 original size:29 final size:29
Alignment explanation
Indices: 47896415--47896479 Score: 112
Period size: 29 Copynumber: 2.2 Consensus size: 29
47896405 GTGACGAGAT
*
47896415 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAAAATA
47896444 TGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCATGCTGGAAAAATA
*
47896473 CGGCACT
1 TGGCACT
47896480 GGGTGTGCGA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 34 1.00
ACGTcount: A:0.31, C:0.17, G:0.28, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAAAATA
Found at i:47903748 original size:79 final size:80
Alignment explanation
Indices: 47903665--47903814 Score: 178
Period size: 80 Copynumber: 1.9 Consensus size: 80
47903655 TATGGTAACC
* * * *
47903665 CGCACCAAGGCCTACGGGACTTA-ACCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAGACCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
47903728 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
47903744 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAGACCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
47903809 CCGGAT
66 CCGGAT
47903815 GTAATTTCCA
Statistics
Matches: 58, Mismatches: 11, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
79 20 0.34
80 38 0.66
ACGTcount: A:0.23, C:0.29, G:0.25, T:0.23
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAGACCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:47903816 original size:40 final size:38
Alignment explanation
Indices: 47903705--47903817 Score: 138
Period size: 40 Copynumber: 2.8 Consensus size: 38
47903695 ATCACGATTT
* *
47903705 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GTATGACTA
47903745 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTA-GCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGTATG--ACTA
*
47903785 GCACAATTGCCTTCGGGTCTTAACCCGGATGTA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATGTA
47903818 ATTTCCAGGA
Statistics
Matches: 66, Mismatches: 4, Indels: 6
0.87 0.05 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.06
40 61 0.92
ACGTcount: A:0.22, C:0.28, G:0.26, T:0.24
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGTATGACTA
Found at i:47906804 original size:29 final size:29
Alignment explanation
Indices: 47906735--47906796 Score: 97
Period size: 29 Copynumber: 2.1 Consensus size: 29
47906725 ACGAGATTGG
* * *
47906735 CACTAAGTGTGCATGCTGGAAATATATGG
1 CACTAAGTGTGCATGCTGGAAAAATACGA
47906764 CACTAAGTGTGCATGCTGGAAAAATACGA
1 CACTAAGTGTGCATGCTGGAAAAATACGA
47906793 CACT
1 CACT
47906797 GGGTGTGCGA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.34, C:0.18, G:0.24, T:0.24
Consensus pattern (29 bp):
CACTAAGTGTGCATGCTGGAAAAATACGA
Found at i:47912278 original size:2 final size:2
Alignment explanation
Indices: 47912271--47912296 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
47912261 CGGCTCTAGC
47912271 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
47912297 GTTTGCACAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:47915134 original size:40 final size:40
Alignment explanation
Indices: 47915089--47915254 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
47915079 CGGAATATAA
47915089 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
47915129 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
47915169 CCGGATAT-ACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
47915208 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
47915247 CCGGATAT
1 CCGGATAT
47915255 CATTCAATTT
Statistics
Matches: 105, Mismatches: 19, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
39 46 0.44
40 59 0.56
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:47915211 original size:39 final size:38
Alignment explanation
Indices: 47915105--47915216 Score: 134
Period size: 39 Copynumber: 2.8 Consensus size: 38
47915095 ATAATCACGT
* * *
47915105 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATA-TACAACTA
* *
47915145 GCACGAATGCCTTCGGGCCTTAGCCCGGATATACCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATACAACTA
*
47915184 GCACAATTGCCTTCGGGTCTTAACCCGGATATA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATATA
47915217 ATTTCCAGCA
Statistics
Matches: 63, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
38 2 0.03
39 32 0.51
40 29 0.46
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATATACAACTA
Found at i:47915238 original size:79 final size:78
Alignment explanation
Indices: 47915105--47915254 Score: 196
Period size: 79 Copynumber: 1.9 Consensus size: 78
47915095 ATAATCACGT
*
47915105 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGG-CTTAGCC
47915170 CGGATATACCACTA
65 CGGATATACCACTA
* * ** * *
47915184 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
47915247 CCGGATAT
64 CCGGATAT
47915255 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
78 17 0.27
79 45 0.73
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.26
Consensus pattern (78 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATACCACTA
Found at i:47916102 original size:17 final size:19
Alignment explanation
Indices: 47916079--47916124 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
47916069 AAGAAGCATG
47916079 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
47916097 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
47916115 AATCATGCTC
1 AATCATGCTC
47916125 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:47922724 original size:40 final size:40
Alignment explanation
Indices: 47922679--47922845 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
47922669 CGGAATATAA
47922679 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
47922719 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
47922759 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
47922799 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
47922838 CCGGATAT
1 CCGGATAT
47922846 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:47922829 original size:80 final size:79
Alignment explanation
Indices: 47922679--47922845 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
47922669 CGGAATATAA
* *
47922679 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
47922744 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
47922759 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
47922821 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
47922838 CCGGATAT
1 CCGGATAT
47922846 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:47923694 original size:17 final size:19
Alignment explanation
Indices: 47923671--47923716 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
47923661 AAGAAGCATG
47923671 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
47923689 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
47923707 AATCATGCTC
1 AATCATGCTC
47923717 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:47926822 original size:21 final size:21
Alignment explanation
Indices: 47926793--47926832 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
47926783 TTCGAATTTG
47926793 TTTACCTATTATTATTATTCA
1 TTTACCTATTATTATTATTCA
*
47926814 TTTATCTATTATTATTATT
1 TTTACCTATTATTATTATT
47926833 GTTTATATTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.28, C:0.10, G:0.00, T:0.62
Consensus pattern (21 bp):
TTTACCTATTATTATTATTCA
Found at i:47934452 original size:21 final size:21
Alignment explanation
Indices: 47934426--47934467 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
47934416 AGGGGTTCGA
47934426 TACTCTAATAAAAAATTTAGT
1 TACTCTAATAAAAAATTTAGT
47934447 TACTCTAATAAAAAATTTAGT
1 TACTCTAATAAAAAATTTAGT
47934468 AGACTCTACA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.48, C:0.10, G:0.05, T:0.38
Consensus pattern (21 bp):
TACTCTAATAAAAAATTTAGT
Found at i:47934473 original size:22 final size:21
Alignment explanation
Indices: 47934427--47934475 Score: 80
Period size: 21 Copynumber: 2.3 Consensus size: 21
47934417 GGGGTTCGAT
*
47934427 ACTCTAATAAAAAATTTAGTT
1 ACTCTAATAAAAAATTTAGTG
47934448 ACTCTAATAAAAAATTTAGTAG
1 ACTCTAATAAAAAATTTAGT-G
47934470 ACTCTA
1 ACTCTA
47934476 CAGGAAAAGT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
21 20 0.77
22 6 0.23
ACGTcount: A:0.47, C:0.12, G:0.06, T:0.35
Consensus pattern (21 bp):
ACTCTAATAAAAAATTTAGTG
Found at i:47935826 original size:27 final size:27
Alignment explanation
Indices: 47935796--47935853 Score: 80
Period size: 27 Copynumber: 2.1 Consensus size: 27
47935786 ATTACTAAAG
* *
47935796 TACCCTCAATTTATAGAATTACTGTTT
1 TACCCTCAATTCACAGAATTACTGTTT
**
47935823 TACCCTTGATTCACAGAATTACTGTTT
1 TACCCTCAATTCACAGAATTACTGTTT
47935850 TACC
1 TACC
47935854 ATCGATTGTG
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.28, C:0.22, G:0.09, T:0.41
Consensus pattern (27 bp):
TACCCTCAATTCACAGAATTACTGTTT
Found at i:47935875 original size:26 final size:26
Alignment explanation
Indices: 47935839--47935896 Score: 80
Period size: 26 Copynumber: 2.2 Consensus size: 26
47935829 TGATTCACAG
* *
47935839 AATTACTGTTTTACCATCGATTGTGA
1 AATTACAGTTTCACCATCGATTGTGA
* *
47935865 AATTACAGTTTCACCCTTGATTGTGA
1 AATTACAGTTTCACCATCGATTGTGA
47935891 AATTAC
1 AATTAC
47935897 TGAAATACCC
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.29, C:0.17, G:0.14, T:0.40
Consensus pattern (26 bp):
AATTACAGTTTCACCATCGATTGTGA
Found at i:47935906 original size:26 final size:26
Alignment explanation
Indices: 47935877--47936013 Score: 116
Period size: 27 Copynumber: 5.2 Consensus size: 26
47935867 TTACAGTTTC
**
47935877 ACCCTTGATTGTGAAATTACTGAAAT
1 ACCCTTGATTGTGAAATTACCAAAAT
* *
47935903 ACCCCT-ATAG-GTAGAATTACCAAAAT
1 ACCCTTGATTGTG-A-AATTACCAAAAT
* *
47935929 ACCCTTAGTTTGTAAAATTACCAAAAT
1 ACCCTT-GATTGTGAAATTACCAAAAT
* *
47935956 ACCACTTGTTTGTGAAATTACCGAAAT
1 ACC-CTTGATTGTGAAATTACCAAAAT
** *
47935983 ACCCTCAATTTGTAAAATTACCAAAAT
1 ACCCTTGA-TTGTGAAATTACCAAAAT
47936010 ACCC
1 ACCC
47936014 CTAATTTACA
Statistics
Matches: 89, Mismatches: 15, Indels: 13
0.76 0.13 0.11
Matches are distributed among these distances:
24 1 0.01
25 4 0.04
26 22 0.25
27 56 0.63
28 6 0.07
ACGTcount: A:0.39, C:0.21, G:0.10, T:0.30
Consensus pattern (26 bp):
ACCCTTGATTGTGAAATTACCAAAAT
Found at i:47935951 original size:27 final size:27
Alignment explanation
Indices: 47935917--47936125 Score: 161
Period size: 27 Copynumber: 7.7 Consensus size: 27
47935907 CTATAGGTAG
47935917 AATTACCAAAATACCCTTAGTTTGTAA
1 AATTACCAAAATACCCTTAGTTTGTAA
*
47935944 AATTACCAAAATACCACTT-GTTTGTGA
1 AATTACCAAAATACC-CTTAGTTTGTAA
* * *
47935971 AATTACCGAAATACCCTCAATTTGTAA
1 AATTACCAAAATACCCTTAGTTTGTAA
* * **
47935998 AATTACCAAAATACCCCTAATTTACAA
1 AATTACCAAAATACCCTTAGTTTGTAA
** * *
47936025 AATTATAAAAATACCCTTGACTTTCTAAA
1 AATTACCAAAATACCCTT-AGTTTGT-AA
* * * **
47936054 AATTA-TAGAAATACCATTGGTTTACAA
1 AATTACCA-AAATACCCTTAGTTTGTAA
** * *
47936081 AATTACTGAAATACCCTTGGTTTGTAG
1 AATTACCAAAATACCCTTAGTTTGTAA
* *
47936108 ATTTACCAAAACACCCTT
1 AATTACCAAAATACCCTT
47936126 GTAGGATGAA
Statistics
Matches: 145, Mismatches: 31, Indels: 12
0.77 0.16 0.06
Matches are distributed among these distances:
26 2 0.01
27 115 0.79
28 12 0.08
29 16 0.11
ACGTcount: A:0.41, C:0.20, G:0.08, T:0.32
Consensus pattern (27 bp):
AATTACCAAAATACCCTTAGTTTGTAA
Found at i:47936027 original size:81 final size:79
Alignment explanation
Indices: 47935877--47936044 Score: 210
Period size: 81 Copynumber: 2.1 Consensus size: 79
47935867 TTACAGTTTC
* * * * * **
47935877 ACCCTTGATTGTGAAATTACTGAAATACCCCTATAGGTAGAATTACCAAAATACCCTTAGTTTGT
1 ACCCTTGATTGTGAAATTACCGAAATACCCCAATAGGTAAAATTACCAAAATACCCCTAATTTAC
*
47935942 AAAATTACCAAAAT
66 AAAATTACAAAAAT
* **
47935956 ACCACTTGTTTGTGAAATTACCGAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTAATTT
1 ACC-CTTGATTGTGAAATTACCGAAATACCC-CAATAGGTAAAATTACCAAAATACCCCTAATTT
*
47936021 ACAAAATTATAAAAAT
64 ACAAAATTACAAAAAT
47936037 ACCCTTGA
1 ACCCTTGA
47936045 CTTTCTAAAA
Statistics
Matches: 74, Mismatches: 13, Indels: 3
0.82 0.14 0.03
Matches are distributed among these distances:
79 3 0.04
80 29 0.39
81 42 0.57
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.30
Consensus pattern (79 bp):
ACCCTTGATTGTGAAATTACCGAAATACCCCAATAGGTAAAATTACCAAAATACCCCTAATTTAC
AAAATTACAAAAAT
Found at i:47936195 original size:27 final size:27
Alignment explanation
Indices: 47936165--47936216 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
47936155 TAGGTAAAAA
*
47936165 GACCGTAA-AGCCCTTGTAGGGTAAAGT
1 GACCGTAATA-CCCCTGTAGGGTAAAGT
*
47936192 GACCGTAATACCCCTGTATGGTAAA
1 GACCGTAATACCCCTGTAGGGTAAA
47936217 ATGATGAATA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
27 21 0.95
28 1 0.05
ACGTcount: A:0.31, C:0.21, G:0.25, T:0.23
Consensus pattern (27 bp):
GACCGTAATACCCCTGTAGGGTAAAGT
Found at i:47937068 original size:25 final size:25
Alignment explanation
Indices: 47937030--47937099 Score: 113
Period size: 25 Copynumber: 2.8 Consensus size: 25
47937020 AGGAAGTGCT
* *
47937030 AAAAGGGCTATGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCA
*
47937055 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTACCA
47937080 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
47937100 ATTAAAAGAG
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 42 1.00
ACGTcount: A:0.27, C:0.26, G:0.23, T:0.24
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCA
Found at i:47937112 original size:24 final size:24
Alignment explanation
Indices: 47937029--47937124 Score: 95
Period size: 25 Copynumber: 3.9 Consensus size: 24
47937019 GAGGAAGTGC
*
47937029 TAAAAGGGCTATGCCCCAGTTTACC
1 TAAAAGGGCTATGCCCCAGTTTA-T
* *
47937054 GAAAAGGGCTTTGCCCCAGTTTAT
1 TAAAAGGGCTATGCCCCAGTTTAT
* *
47937078 CAAAAAGGGCTTTGCCCCAG-TTAT
1 -TAAAAGGGCTATGCCCCAGTTTAT
*
47937102 TAAAAGAGGCTAGGCCTCCAGTT
1 TAAAAG-GGCTATGCC-CCAGTT
47937125 ATATGATAAA
Statistics
Matches: 60, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
23 5 0.08
24 11 0.18
25 43 0.72
26 1 0.02
ACGTcount: A:0.28, C:0.24, G:0.23, T:0.25
Consensus pattern (24 bp):
TAAAAGGGCTATGCCCCAGTTTAT
Found at i:47937123 original size:50 final size:50
Alignment explanation
Indices: 47937030--47937124 Score: 113
Period size: 50 Copynumber: 1.9 Consensus size: 50
47937020 AGGAAGTGCT
**
47937030 AAAAGGGCTATGCCCCAGTTTACCGAAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTATGCCCCAGTTTACCGAAAAGGGCTAGGCCCCAGTTTATCA
* **
47937080 AAAAGGGCTTTGCCCCAG-TTA-TTAAAAGAGGCTAGGCCTCCAGTT
1 AAAAGGGCTATGCCCCAGTTTACCGAAAAG-GGCTAGGCC-CCAGTT
47937125 ATATGATAAA
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
48 5 0.13
49 10 0.26
50 23 0.61
ACGTcount: A:0.28, C:0.24, G:0.23, T:0.24
Consensus pattern (50 bp):
AAAAGGGCTATGCCCCAGTTTACCGAAAAGGGCTAGGCCCCAGTTTATCA
Found at i:47937368 original size:31 final size:31
Alignment explanation
Indices: 47937319--47937401 Score: 143
Period size: 31 Copynumber: 2.7 Consensus size: 31
47937309 CGCTTACAGT
*
47937319 AAAGGCTTTGG-CCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
47937349 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
47937380 AAAGGCTTCGGCCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
47937402 TCGAGACTGA
Statistics
Matches: 51, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
30 15 0.29
31 36 0.71
ACGTcount: A:0.29, C:0.16, G:0.27, T:0.29
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:47942978 original size:24 final size:21
Alignment explanation
Indices: 47942926--47942982 Score: 60
Period size: 24 Copynumber: 2.5 Consensus size: 21
47942916 ACCAATCAAT
47942926 ATCATACTCAATTTCATATAAA
1 ATCATAC-CAATTTCATATAAA
**
47942948 AGAATACCAATTTCATGAACTAAA
1 ATCATACCAATTTCAT--A-TAAA
47942972 ATCATACCAAT
1 ATCATACCAAT
47942983 CCACTTGTCT
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
21 9 0.32
22 5 0.18
23 1 0.04
24 13 0.46
ACGTcount: A:0.47, C:0.19, G:0.04, T:0.30
Consensus pattern (21 bp):
ATCATACCAATTTCATATAAA
Found at i:47943786 original size:42 final size:44
Alignment explanation
Indices: 47943727--47943853 Score: 136
Period size: 42 Copynumber: 3.0 Consensus size: 44
47943717 TTGTTATCAA
* * * *
47943727 ATATTGATGCCACTGTCCCAAACAAGGTCTTACACGAAATCAT-
1 ATATCGATGCCAATGTCCCAGACATGGTCTTACACGAAATCATC
*
47943770 ATA-CGATGCCAATGTCCCAGACATTGTCTTACAC-ATAATC-TC
1 ATATCGATGCCAATGTCCCAGACATGGTCTTACACGA-AATCATC
* * * *
47943812 ATATCAATGGCAATGTCCTAGACATGGTCTTACACGATATCA
1 ATATCGATGCCAATGTCCCAGACATGGTCTTACACGAAATCA
47943854 CATCTCAGAA
Statistics
Matches: 69, Mismatches: 10, Indels: 9
0.78 0.11 0.10
Matches are distributed among these distances:
41 2 0.03
42 33 0.48
43 33 0.48
44 1 0.01
ACGTcount: A:0.33, C:0.25, G:0.14, T:0.28
Consensus pattern (44 bp):
ATATCGATGCCAATGTCCCAGACATGGTCTTACACGAAATCATC
Found at i:47953685 original size:40 final size:40
Alignment explanation
Indices: 47953640--47953806 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
47953630 CGGAATATAA
47953640 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
47953680 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
47953720 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
47953760 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
47953799 CCGGATAT
1 CCGGATAT
47953807 CATTCAATTT
Statistics
Matches: 105, Mismatches: 21, Indels: 3
0.81 0.16 0.02
Matches are distributed among these distances:
39 14 0.13
40 91 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:47953790 original size:80 final size:79
Alignment explanation
Indices: 47953656--47953806 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 79
47953646 ATAATCACGT
*
47953656 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGG-CTTAGCC
47953721 CGGATATAGCCACTA
65 CGGATATAGCCACTA
* * ** * *
47953736 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
47953799 CCGGATAT
64 CCGGATAT
47953807 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
79 17 0.27
80 45 0.73
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Found at i:47961377 original size:40 final size:39
Alignment explanation
Indices: 47961332--47961498 Score: 158
Period size: 40 Copynumber: 4.2 Consensus size: 39
47961322 CGGAATATAA
47961332 CCGGATATAATCTCGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCTC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
47961372 CCGGATAGAATAACTC-GCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAAT--CTCTGCACAAATGCCTTCGGGTCTTAGC
** * * *
47961412 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCTCT-GCACAAATGCCTTCGGGTCTTAGC
* * * * *
47961452 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCT-CTGCACAAATGCCTTCGGGTCTTAGC
47961491 CCGGATAT
1 CCGGATAT
47961499 CATTCAATTT
Statistics
Matches: 103, Mismatches: 19, Indels: 11
0.77 0.14 0.08
Matches are distributed among these distances:
38 2 0.02
39 13 0.13
40 84 0.82
41 1 0.01
42 3 0.03
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.26
Consensus pattern (39 bp):
CCGGATATAATCTCTGCACAAATGCCTTCGGGTCTTAGC
Found at i:47961482 original size:80 final size:79
Alignment explanation
Indices: 47961348--47961498 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 79
47961338 ATAATCTCGT
*
47961348 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGG-CTTAGCC
47961413 CGGATATAGCCACTA
65 CGGATATAGCCACTA
* * ** * *
47961428 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
47961491 CCGGATAT
64 CCGGATAT
47961499 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
79 17 0.27
80 45 0.73
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Found at i:47987893 original size:43 final size:43
Alignment explanation
Indices: 47987827--47987940 Score: 108
Period size: 42 Copynumber: 2.7 Consensus size: 43
47987817 AACGGGTACA
* * * *
47987827 ATGCCAATGTCCCGGAC-GTGGTCTTACATATAATTCAG-TATCG
1 ATGCCGATGTCCCAGACAG-GGTCTTACATAGAAATCAGATA-CG
** * *
47987870 ATGCCTCTGTCCCAGATAGGGTCTTAC-TCGAAATCAGATACG
1 ATGCCGATGTCCCAGACAGGGTCTTACATAGAAATCAGATACG
*
47987912 ATGCCGATGTCCCAGACATGGTCTTACAT
1 ATGCCGATGTCCCAGACAGGGTCTTACAT
47987941 GATGTCTCAG
Statistics
Matches: 57, Mismatches: 11, Indels: 6
0.77 0.15 0.08
Matches are distributed among these distances:
42 32 0.56
43 24 0.42
44 1 0.02
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.28
Consensus pattern (43 bp):
ATGCCGATGTCCCAGACAGGGTCTTACATAGAAATCAGATACG
Found at i:47990340 original size:40 final size:40
Alignment explanation
Indices: 47990295--47990461 Score: 167
Period size: 40 Copynumber: 4.2 Consensus size: 40
47990285 CGGAATATAA
47990295 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
47990335 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * *
47990375 CCGGATATAGCCACTAGCACAATTTCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * ** *
47990415 CCGGATATAATTTCCAGCATATTTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
47990454 CCGGATAT
1 CCGGATAT
47990462 CATTCAATTT
Statistics
Matches: 104, Mismatches: 22, Indels: 3
0.81 0.17 0.02
Matches are distributed among these distances:
39 14 0.13
40 90 0.87
ACGTcount: A:0.24, C:0.27, G:0.22, T:0.28
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:48000264 original size:23 final size:23
Alignment explanation
Indices: 48000238--48000363 Score: 155
Period size: 23 Copynumber: 5.5 Consensus size: 23
48000228 AATATAGTCA
* **
48000238 AAGCTATCACTATAACGTAGCCG
1 AAGCTACCACTATATTGTAGCCG
*
48000261 AAGCTACCACTGTATTGTAGCCG
1 AAGCTACCACTATATTGTAGCCG
* **
48000284 AAGCTACCACTGAGA-TGTAGCTA
1 AAGCTACCACT-ATATTGTAGCCG
*
48000307 AAGCTACCACTATATTATAGCCG
1 AAGCTACCACTATATTGTAGCCG
*
48000330 AAGCTACCACTGTATTGTAGCCG
1 AAGCTACCACTATATTGTAGCCG
48000353 AAGCTACCACT
1 AAGCTACCACT
48000364 GAGATGTAGC
Statistics
Matches: 87, Mismatches: 14, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
22 2 0.02
23 84 0.97
24 1 0.01
ACGTcount: A:0.32, C:0.26, G:0.18, T:0.24
Consensus pattern (23 bp):
AAGCTACCACTATATTGTAGCCG
Found at i:48000348 original size:69 final size:69
Alignment explanation
Indices: 48000237--48000374 Score: 240
Period size: 69 Copynumber: 2.0 Consensus size: 69
48000227 TAATATAGTC
* *
48000237 AAAGCTATCACTATAACGTAGCCGAAGCTACCACTGTATTGTAGCCGAAGCTACCACTGAGATGT
1 AAAGCTACCACTATAACATAGCCGAAGCTACCACTGTATTGTAGCCGAAGCTACCACTGAGATGT
48000302 AGCT
66 AGCT
**
48000306 AAAGCTACCACTATATTATAGCCGAAGCTACCACTGTATTGTAGCCGAAGCTACCACTGAGATGT
1 AAAGCTACCACTATAACATAGCCGAAGCTACCACTGTATTGTAGCCGAAGCTACCACTGAGATGT
48000371 AGCT
66 AGCT
48000375 GATAGATTCC
Statistics
Matches: 65, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
69 65 1.00
ACGTcount: A:0.32, C:0.25, G:0.20, T:0.24
Consensus pattern (69 bp):
AAAGCTACCACTATAACATAGCCGAAGCTACCACTGTATTGTAGCCGAAGCTACCACTGAGATGT
AGCT
Found at i:48000364 original size:23 final size:23
Alignment explanation
Indices: 48000254--48000364 Score: 161
Period size: 23 Copynumber: 4.8 Consensus size: 23
48000244 TCACTATAAC
48000254 GTAGCCGAAGCTACCACTGTATT
1 GTAGCCGAAGCTACCACTGTATT
*
48000277 GTAGCCGAAGCTACCACTG-AGAT
1 GTAGCCGAAGCTACCACTGTA-TT
** *
48000300 GTAGCTAAAGCTACCACTATATT
1 GTAGCCGAAGCTACCACTGTATT
*
48000323 ATAGCCGAAGCTACCACTGTATT
1 GTAGCCGAAGCTACCACTGTATT
48000346 GTAGCCGAAGCTACCACTG
1 GTAGCCGAAGCTACCACTG
48000365 AGATGTAGCT
Statistics
Matches: 76, Mismatches: 10, Indels: 4
0.84 0.11 0.04
Matches are distributed among these distances:
22 1 0.01
23 74 0.97
24 1 0.01
ACGTcount: A:0.30, C:0.26, G:0.21, T:0.23
Consensus pattern (23 bp):
GTAGCCGAAGCTACCACTGTATT
Found at i:48005758 original size:6 final size:6
Alignment explanation
Indices: 48005747--48005804 Score: 55
Period size: 6 Copynumber: 9.5 Consensus size: 6
48005737 AATTAGGTGA
* * *
48005747 CAGAAT CAGAAT CAGAAT CAGTAT CAGGTAA- CAGCAT CAAAAT CAGAAT
1 CAGAAT CAGAAT CAGAAT CAGAAT CA-G-AAT CAGAAT CAGAAT CAGAAT
*
48005796 CAGTAT CAG
1 CAGAAT CAG
48005805 GTAACAGAAT
Statistics
Matches: 42, Mismatches: 7, Indels: 6
0.76 0.13 0.11
Matches are distributed among these distances:
5 1 0.02
6 37 0.88
7 3 0.07
8 1 0.02
ACGTcount: A:0.45, C:0.19, G:0.17, T:0.19
Consensus pattern (6 bp):
CAGAAT
Found at i:48005758 original size:31 final size:31
Alignment explanation
Indices: 48005715--48005827 Score: 129
Period size: 31 Copynumber: 3.6 Consensus size: 31
48005705 TTAACCCATT
* * * *
48005715 ACAGAAT-AAGAATCAAAATCGGAATTAGGTG
1 ACAGAATCAA-AATCAAAATCAGTATCAGGTA
* *
48005746 ACAGAATCAGAATCAGAATCAGTATCAGGTA
1 ACAGAATCAAAATCAAAATCAGTATCAGGTA
* *
48005777 ACAGCATCAAAATCAGAATCAGTATCAGGTA
1 ACAGAATCAAAATCAAAATCAGTATCAGGTA
48005808 ACAGAATCAAAAATCAAAAT
1 ACAGAATC-AAAATCAAAAT
48005828 GTAAATGCAA
Statistics
Matches: 70, Mismatches: 10, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
31 59 0.84
32 11 0.16
ACGTcount: A:0.50, C:0.15, G:0.17, T:0.19
Consensus pattern (31 bp):
ACAGAATCAAAATCAAAATCAGTATCAGGTA
Found at i:48006006 original size:27 final size:26
Alignment explanation
Indices: 48005964--48006065 Score: 132
Period size: 27 Copynumber: 3.8 Consensus size: 26
48005954 GCTCAGTTAT
* *
48005964 CAGATATTGTGACAGAGTCACCAGATA
1 CAGATATTGTGGCAGAGCCACCAGA-A
48005991 CAGATATTGTGGCAGAGCCACCAGAA
1 CAGATATTGTGGCAGAGCCACCAGAA
*
48006017 CAGATATTTGTGGCATAGCCACCAGAAA
1 CAGATA-TTGTGGCAGAGCCACCAG-AA
* *
48006045 CAGATAATGTGGCAAAGCCAC
1 CAGATATTGTGGCAGAGCCAC
48006066 TTAACAGAAT
Statistics
Matches: 68, Mismatches: 5, Indels: 4
0.88 0.06 0.05
Matches are distributed among these distances:
26 7 0.10
27 53 0.78
28 8 0.12
ACGTcount: A:0.36, C:0.22, G:0.24, T:0.19
Consensus pattern (26 bp):
CAGATATTGTGGCAGAGCCACCAGAA
Found at i:48006258 original size:22 final size:22
Alignment explanation
Indices: 48006228--48006288 Score: 61
Period size: 22 Copynumber: 2.8 Consensus size: 22
48006218 ATACGTTTCG
* *
48006228 CACACAGCCATAATCAGGTTGG
1 CACAAAGCCATAATCAGGTTGA
* * *
48006250 GACAGAGCCAT-ATGTAGGTTGA
1 CACAAAGCCATAAT-CAGGTTGA
48006272 CACAAAGCCATAATCAG
1 CACAAAGCCATAATCAG
48006289 AAGGCTTTAA
Statistics
Matches: 30, Mismatches: 7, Indels: 4
0.73 0.17 0.10
Matches are distributed among these distances:
21 2 0.07
22 26 0.87
23 2 0.07
ACGTcount: A:0.36, C:0.23, G:0.23, T:0.18
Consensus pattern (22 bp):
CACAAAGCCATAATCAGGTTGA
Found at i:48006770 original size:27 final size:27
Alignment explanation
Indices: 48006731--48007388 Score: 905
Period size: 27 Copynumber: 24.6 Consensus size: 27
48006721 TACCACACAA
* *
48006731 GGTATCTCGGTAATTCCACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
**
48006758 GGTATTTTAGTAATTCTACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
48006785 GGTATTTCGGTAATTCTACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
* * *
48006812 GGTATTGCGATAATTCTACCCTATAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
* *
48006839 GGTACTTCGTTAATTCTACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
* *
48006866 GTTATTCCGGTAATTCTACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
48006893 GGTATTTCGGTAATTCTACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
* * *
48006920 GGTATTGCGATAATTCTACCCTATAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
* *
48006947 GGTACTTCGTTAATTCTACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
* *
48006974 GTTATTCCGGTAATTCTACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
48007001 GGTATTTCGGTAATTCTACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
* *
48007028 GGTATTGCGATAATTCTACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
*
48007055 GGTATTTCGGTGATTCTACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
*
48007082 GGTA-TTCTGGTAATTCTACCCTACCGG
1 GGTATTTC-GGTAATTCTACCCTACAGG
* * **
48007109 GGTATTCCGGTAATTCTACCTTATTGG
1 GGTATTTCGGTAATTCTACCCTACAGG
*
48007136 GGTATTTCGGTAATTCTACTCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
* *
48007163 GGTATTGCGATAATTCTACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
*
48007190 GGTATTTCGGTAATTCTACCCTACAAG
1 GGTATTTCGGTAATTCTACCCTACAGG
48007217 GGTATTTCGGTAATTCTACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
*
48007244 GGTATTCCGGTAATTCTACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
48007271 GGTATTTCGGTAA-T-T---CTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
* *
48007293 GGTATTCCGGTAATTCTATCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
* * *
48007320 GGTATTCCGATAATTCTGCCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
* * *
48007347 GGTATTCCGGTAGTTCTACCCTACAGT
1 GGTATTTCGGTAATTCTACCCTACAGG
*
48007374 GGTATTCCGGTAATT
1 GGTATTTCGGTAATT
48007389 TTATAAACAA
Statistics
Matches: 558, Mismatches: 66, Indels: 14
0.87 0.10 0.02
Matches are distributed among these distances:
22 19 0.03
23 1 0.00
24 1 0.00
25 1 0.00
26 4 0.01
27 530 0.95
28 2 0.00
ACGTcount: A:0.22, C:0.22, G:0.22, T:0.33
Consensus pattern (27 bp):
GGTATTTCGGTAATTCTACCCTACAGG
Found at i:48007558 original size:27 final size:27
Alignment explanation
Indices: 48007382--48007551 Score: 209
Period size: 27 Copynumber: 6.3 Consensus size: 27
48007372 GTGGTATTCC
* *
48007382 GGTAATTTTATAAACAAAGGGTATTGT
1 GGTAATTTTATAAACAAGGGGTATTTT
* * *
48007409 AGTAATTTTACAAACTAGGGGTATTTT
1 GGTAATTTTATAAACAAGGGGTATTTT
*
48007436 GGTAATTTTGTAAACTAA-GGGTATTTT
1 GGTAATTTTATAAAC-AAGGGGTATTTT
* *
48007463 GGTAATTTTACAAACCAGGGGTATTTT
1 GGTAATTTTATAAACAAGGGGTATTTT
*
48007490 GGTGATTTTATAAACCAA-GGGTATTTT
1 GGTAATTTTATAAA-CAAGGGGTATTTT
* *
48007517 AGTAATTTTACAAACAAGGGGTATTTT
1 GGTAATTTTATAAACAAGGGGTATTTT
48007544 GGTAATTT
1 GGTAATTT
48007552 GGTAAACTAA
Statistics
Matches: 120, Mismatches: 19, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
26 4 0.03
27 113 0.94
28 3 0.03
ACGTcount: A:0.32, C:0.06, G:0.21, T:0.40
Consensus pattern (27 bp):
GGTAATTTTATAAACAAGGGGTATTTT
Found at i:48007558 original size:54 final size:54
Alignment explanation
Indices: 48007382--48007551 Score: 268
Period size: 54 Copynumber: 3.1 Consensus size: 54
48007372 GTGGTATTCC
* *
48007382 GGTAATTTTATAAACAAAGGGTATTGTAGTAATTTTACAAACTAGGGGTATTTT
1 GGTAATTTTATAAACAAAGGGTATTTTAGTAATTTTACAAACAAGGGGTATTTT
* * * *
48007436 GGTAATTTTGTAAACTAAGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTT
1 GGTAATTTTATAAACAAAGGGTATTTTAGTAATTTTACAAACAAGGGGTATTTT
* *
48007490 GGTGATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAACAAGGGGTATTTT
1 GGTAATTTTATAAACAAAGGGTATTTTAGTAATTTTACAAACAAGGGGTATTTT
48007544 GGTAATTT
1 GGTAATTT
48007552 GGTAAACTAA
Statistics
Matches: 105, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
54 105 1.00
ACGTcount: A:0.32, C:0.06, G:0.21, T:0.40
Consensus pattern (54 bp):
GGTAATTTTATAAACAAAGGGTATTTTAGTAATTTTACAAACAAGGGGTATTTT
Found at i:48013341 original size:60 final size:60
Alignment explanation
Indices: 48013221--48013345 Score: 148
Period size: 60 Copynumber: 2.1 Consensus size: 60
48013211 CAGTGTTAAC
* * *
48013221 TGGGCCTTAGCCTATATCAATATTAATCTGGGCCATAGCCCCTTACAGTATCAGAGTATAT
1 TGGGCCTTAGCCCATATCAATATTAATCTAGGCCATAGCCCATTACAG-ATCAGAGTATAT
* *
48013282 TGGGCC-TAGCCCATATCAGTATTAATCTAGGCCGTAGCCCTATTACA-AGTC-GAGATATAT
1 TGGGCCTTAGCCCATATCAATATTAATCTAGGCCATAGCCC-ATTACAGA-TCAGAG-TATAT
48013342 TGGG
1 TGGG
48013346 TCTTTCCCAT
Statistics
Matches: 56, Mismatches: 5, Indels: 7
0.82 0.07 0.10
Matches are distributed among these distances:
59 4 0.07
60 41 0.73
61 11 0.20
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.30
Consensus pattern (60 bp):
TGGGCCTTAGCCCATATCAATATTAATCTAGGCCATAGCCCATTACAGATCAGAGTATAT
Found at i:48014006 original size:16 final size:16
Alignment explanation
Indices: 48013985--48014016 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
48013975 TCACAAATGC
48013985 CGACTTTTCGGCTTTT
1 CGACTTTTCGGCTTTT
48014001 CGACTTTTCGGCTTTT
1 CGACTTTTCGGCTTTT
48014017 GCCGATCTAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.06, C:0.25, G:0.19, T:0.50
Consensus pattern (16 bp):
CGACTTTTCGGCTTTT
Found at i:48014820 original size:5 final size:5
Alignment explanation
Indices: 48014812--48014843 Score: 55
Period size: 5 Copynumber: 6.2 Consensus size: 5
48014802 GTAGATGAAG
48014812 AGAAA AGAAA AGAAA AGAAA AGAAGA AGAAA A
1 AGAAA AGAAA AGAAA AGAAA AGAA-A AGAAA A
48014844 AATTGAATCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
5 21 0.81
6 5 0.19
ACGTcount: A:0.78, C:0.00, G:0.22, T:0.00
Consensus pattern (5 bp):
AGAAA
Found at i:48014830 original size:15 final size:16
Alignment explanation
Indices: 48014788--48014843 Score: 71
Period size: 15 Copynumber: 3.6 Consensus size: 16
48014778 TATGGGGGAA
48014788 AAGAAGAAAAG-AAAG
1 AAGAAGAAAAGAAAAG
* * *
48014803 TAGATGAAGAGAAAAG
1 AAGAAGAAAAGAAAAG
48014819 AA-AAGAAAAGAAAAG
1 AAGAAGAAAAGAAAAG
48014834 AAGAAGAAAA
1 AAGAAGAAAA
48014844 AATTGAATCC
Statistics
Matches: 33, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
15 21 0.64
16 12 0.36
ACGTcount: A:0.71, C:0.00, G:0.25, T:0.04
Consensus pattern (16 bp):
AAGAAGAAAAGAAAAG
Found at i:48014836 original size:25 final size:26
Alignment explanation
Indices: 48014791--48014843 Score: 65
Period size: 25 Copynumber: 2.1 Consensus size: 26
48014781 GGGGGAAAAG
* *
48014791 AAGAAAAGAAAGTAGATGAAG-AGAA
1 AAGAAAAGAAAGTAAAAGAAGAAGAA
48014816 AAGAAAAGAAAAG-AAAAGAAGAAGAA
1 AAGAAAAG-AAAGTAAAAGAAGAAGAA
48014842 AA
1 AA
48014844 AATTGAATCC
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
25 14 0.58
26 10 0.42
ACGTcount: A:0.72, C:0.00, G:0.25, T:0.04
Consensus pattern (26 bp):
AAGAAAAGAAAGTAAAAGAAGAAGAA
Found at i:48015905 original size:19 final size:18
Alignment explanation
Indices: 48015868--48015911 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
48015858 ATACTTACAG
48015868 TAAT-ATTTTTCTAATAA
1 TAATAATTTTTCTAATAA
*
48015885 TAATAATTTTATCTCATAA
1 TAATAATTTT-TCTAATAA
*
48015904 TACTAATT
1 TAATAATT
48015912 AAAATTTCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 4 0.17
18 5 0.22
19 14 0.61
ACGTcount: A:0.41, C:0.09, G:0.00, T:0.50
Consensus pattern (18 bp):
TAATAATTTTTCTAATAA
Found at i:48018105 original size:24 final size:24
Alignment explanation
Indices: 48018078--48018147 Score: 131
Period size: 24 Copynumber: 2.9 Consensus size: 24
48018068 CTTTAGAAGA
*
48018078 ATGTATCAAATGCGTAGTATCTGG
1 ATGTATCAAATACGTAGTATCTGG
48018102 ATGTATCAAATACGTAGTATCTGG
1 ATGTATCAAATACGTAGTATCTGG
48018126 ATGTATCAAATACGTAGTATCT
1 ATGTATCAAATACGTAGTATCT
48018148 TTGCTTAGAG
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
24 45 1.00
ACGTcount: A:0.33, C:0.13, G:0.20, T:0.34
Consensus pattern (24 bp):
ATGTATCAAATACGTAGTATCTGG
Found at i:48023583 original size:40 final size:41
Alignment explanation
Indices: 48023494--48023589 Score: 119
Period size: 40 Copynumber: 2.4 Consensus size: 41
48023484 AACTATGTTT
48023494 GGCACTAAGTGTGCG-GTTCGAAATAGCTTCGGCTACAAATA
1 GGCACTAAGTGTGCGAGTTCGAAATAGCTTCGGCTA-AAATA
* *
48023535 -GCACTAAGTGTGCGAGTT-GGAATAGCTTCGGCT-ATATGA
1 GGCACTAAGTGTGCGAGTTCGAAATAGCTTCGGCTAAAAT-A
*
48023574 GGCATTAAGTGTGCGA
1 GGCACTAAGTGTGCGA
48023590 TACCGAGAAA
Statistics
Matches: 49, Mismatches: 3, Indels: 7
0.83 0.05 0.12
Matches are distributed among these distances:
38 3 0.06
39 1 0.02
40 42 0.86
41 3 0.06
ACGTcount: A:0.27, C:0.17, G:0.30, T:0.26
Consensus pattern (41 bp):
GGCACTAAGTGTGCGAGTTCGAAATAGCTTCGGCTAAAATA
Found at i:48031722 original size:49 final size:49
Alignment explanation
Indices: 48031666--48031880 Score: 367
Period size: 49 Copynumber: 4.4 Consensus size: 49
48031656 TACATATATG
* * *
48031666 TGTGATAAGGCCGAATGGCCAATGCGATGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
* *
48031715 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGGATCTATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
48031764 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
* *
48031813 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
48031862 TGTGATAAGGCCTAATGGC
1 TGTGATAAGGCCTAATGGC
48031881 TAATGTAAAA
Statistics
Matches: 156, Mismatches: 10, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
49 156 1.00
ACGTcount: A:0.30, C:0.10, G:0.32, T:0.29
Consensus pattern (49 bp):
TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
Found at i:48032071 original size:37 final size:37
Alignment explanation
Indices: 48031982--48032102 Score: 217
Period size: 37 Copynumber: 3.3 Consensus size: 37
48031972 GGAATATGTT
*
48031982 CCGGGTGAGACCCGATGACTACGTGTGGAGATTATGA
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
48032019 CC-GGTAAGACCCGATGACTACGTGTGGAGATTATGA
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
*
48032055 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGT
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
48032092 CCGGGTAAGAC
1 CCGGGTAAGAC
48032103 TTCTTTTATA
Statistics
Matches: 81, Mismatches: 2, Indels: 2
0.95 0.02 0.02
Matches are distributed among these distances:
36 35 0.43
37 46 0.57
ACGTcount: A:0.26, C:0.20, G:0.33, T:0.21
Consensus pattern (37 bp):
CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
Found at i:48033996 original size:40 final size:40
Alignment explanation
Indices: 48033914--48033998 Score: 107
Period size: 40 Copynumber: 2.1 Consensus size: 40
48033904 GAGAATTGAG
** * * *
48033914 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGCCCCGAAGAGCAATCATACT
* *
48033954 AGTGATGTATCCGGGCTAGGCCCCGAAGAGCAATCATACT
1 AGTGATGTATCCGGACTAAGCCCCGAAGAGCAATCATACT
48033994 AGTGA
1 AGTGA
48033999 CGTGTATTCG
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 38 1.00
ACGTcount: A:0.27, C:0.21, G:0.28, T:0.24
Consensus pattern (40 bp):
AGTGATGTATCCGGACTAAGCCCCGAAGAGCAATCATACT
Found at i:48034238 original size:29 final size:29
Alignment explanation
Indices: 48034196--48034417 Score: 401
Period size: 29 Copynumber: 7.7 Consensus size: 29
48034186 GCGAATGATT
48034196 GAGGCACTATGTGTGCGAGATCAGTAATC
1 GAGGCACTATGTGTGCGAGATCAGTAATC
* *
48034225 GAGGCACTATGTGTGTGAGATCAGTAATT
1 GAGGCACTATGTGTGCGAGATCAGTAATC
48034254 GAGGCACTATGTGTGCGAGATCAGTAATC
1 GAGGCACTATGTGTGCGAGATCAGTAATC
48034283 GAGGCACTATGTGTGCGAGATCAGTAATC
1 GAGGCACTATGTGTGCGAGATCAGTAATC
48034312 GAGGCACTATGTGTGCGAGATCAGTAATC
1 GAGGCACTATGTGTGCGAGATCAGTAATC
*
48034341 GAGGCACTATGTGTGCGAGATCGGTAATC
1 GAGGCACTATGTGTGCGAGATCAGTAATC
48034370 GAGGCACTATGTGTGCGAGATC-GATAATC
1 GAGGCACTATGTGTGCGAGATCAG-TAATC
48034399 GAGGCACTATGTGTGCGAG
1 GAGGCACTATGTGTGCGAG
48034418 TTTTTCAACA
Statistics
Matches: 187, Mismatches: 5, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
28 1 0.01
29 186 0.99
ACGTcount: A:0.27, C:0.16, G:0.32, T:0.25
Consensus pattern (29 bp):
GAGGCACTATGTGTGCGAGATCAGTAATC
Done.