Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr03 135709677
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 135709677
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 162 of 438
Found at i:49364843 original size:19 final size:19
Alignment explanation
Indices: 49364819--49364857 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
49364809 CCATCATAAC
49364819 ATACAAGTAAGGCACATTA
1 ATACAAGTAAGGCACATTA
49364838 ATACAAGTAAGGCACATTA
1 ATACAAGTAAGGCACATTA
49364857 A
1 A
49364858 CATAAATCAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.49, C:0.15, G:0.15, T:0.21
Consensus pattern (19 bp):
ATACAAGTAAGGCACATTA
Found at i:49369352 original size:40 final size:40
Alignment explanation
Indices: 49369254--49369353 Score: 119
Period size: 40 Copynumber: 2.5 Consensus size: 40
49369244 ACAAATCTAA
* ***
49369254 TATATTTGGCACTTAGTGTGCTTTTTGAAATAGCTTCAGC
1 TATATATGGCACTTAGTGTGCGAATTGAAATAGCTTCAGC
* * *
49369294 TATATATAGCATTTAGTGTGCGAATTGGAATAGCTTCAGC
1 TATATATGGCACTTAGTGTGCGAATTGAAATAGCTTCAGC
* *
49369334 TATATGTGGCACTGAGTGTG
1 TATATATGGCACTTAGTGTG
49369354 GGATATCGTG
Statistics
Matches: 49, Mismatches: 11, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
40 49 1.00
ACGTcount: A:0.25, C:0.13, G:0.24, T:0.38
Consensus pattern (40 bp):
TATATATGGCACTTAGTGTGCGAATTGAAATAGCTTCAGC
Found at i:49372445 original size:40 final size:40
Alignment explanation
Indices: 49372375--49372552 Score: 236
Period size: 40 Copynumber: 4.5 Consensus size: 40
49372365 AAGCCAAGTA
* * *
49372375 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCT-CGAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCG-TACAAATG
* * * *
49372414 CCTTCGGGACATAACCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGTACAAATG
*
49372454 CCTTCGGGACTTAGCTCGGATATAGTAACTCGTACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGTACAAATG
*
49372494 CCTTCGGGACTTAGCCCGGATATAGTAGCTCGTACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGTACAAATG
49372534 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
49372553 TTATCATTCA
Statistics
Matches: 124, Mismatches: 12, Indels: 5
0.88 0.09 0.04
Matches are distributed among these distances:
39 12 0.10
40 112 0.90
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGTACAAATG
Found at i:49380425 original size:40 final size:40
Alignment explanation
Indices: 49380355--49380572 Score: 280
Period size: 40 Copynumber: 5.5 Consensus size: 40
49380345 AAGCCAAGTA
* * * *
49380355 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCGAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* * *
49380394 CCTTCGGGACATAGCCCTGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
49380434 CCTTCGGGATTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
49380474 CCTTCGGGACTTAGCCCGGATATAGTAGCTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * * *
49380514 CCTTCAGGACTTAGCCC-GAAACTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
49380554 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
49380573 TTATCATCCA
Statistics
Matches: 157, Mismatches: 18, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
39 15 0.10
40 141 0.90
41 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:49390537 original size:40 final size:40
Alignment explanation
Indices: 49390490--49390584 Score: 113
Period size: 40 Copynumber: 2.4 Consensus size: 40
49390480 AATATATTTG
* *
49390490 GCACTTAGTGTGC-ATTTCGAAATAGCTTCGGCTATATATA
1 GCACTTAGTGTGCGAATT-GAAATAGCTTCAGCTATATATA
* * *
49390530 GCACTTAGTGTGCGAATTGGAATAGCTTCAGCTATATGTG
1 GCACTTAGTGTGCGAATTGAAATAGCTTCAGCTATATATA
49390570 GCA-TTGAGTGTGCGA
1 GCACTT-AGTGTGCGA
49390585 TACCACGATA
Statistics
Matches: 48, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
39 2 0.04
40 43 0.90
41 3 0.06
ACGTcount: A:0.25, C:0.16, G:0.26, T:0.33
Consensus pattern (40 bp):
GCACTTAGTGTGCGAATTGAAATAGCTTCAGCTATATATA
Found at i:49394668 original size:28 final size:27
Alignment explanation
Indices: 49394613--49394724 Score: 138
Period size: 27 Copynumber: 4.1 Consensus size: 27
49394603 AACATGGCTG
* *
49394613 CCAGAACAGATAA-TGTGACAGAGTCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
*
49394639 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAATTGTGGCAGAGCCA
49394667 CCAGAACAGA-AATATGTGGCAGAGCCA
1 CCAGAACAGATAAT-TGTGGCAGAGCCA
* *
49394694 CCAGATCAGATAATTTGTGGCATAGCCA
1 CCAGAACAGATAA-TTGTGGCAGAGCCA
49394722 CCA
1 CCA
49394725 AGACGCTTCC
Statistics
Matches: 75, Mismatches: 6, Indels: 8
0.84 0.07 0.09
Matches are distributed among these distances:
26 8 0.11
27 34 0.45
28 32 0.43
29 1 0.01
ACGTcount: A:0.38, C:0.23, G:0.23, T:0.16
Consensus pattern (27 bp):
CCAGAACAGATAATTGTGGCAGAGCCA
Found at i:49394696 original size:55 final size:54
Alignment explanation
Indices: 49394613--49394724 Score: 154
Period size: 55 Copynumber: 2.1 Consensus size: 54
49394603 AACATGGCTG
* *
49394613 CCAGAACAGATAATGTGACAGAGTCACCAGATACAGATAA-TCGTGGCAGAGCCA
1 CCAGAACAGAAAATGTGACAGAGCCACCAGAT-CAGATAATTCGTGGCAGAGCCA
* * *
49394667 CCAGAACAGAAATATGTGGCAGAGCCACCAGATCAGATAATTTGTGGCATAGCCA
1 CCAGAACAGAAA-ATGTGACAGAGCCACCAGATCAGATAATTCGTGGCAGAGCCA
49394722 CCA
1 CCA
49394725 AGACGCTTCC
Statistics
Matches: 51, Mismatches: 5, Indels: 3
0.86 0.08 0.05
Matches are distributed among these distances:
54 18 0.35
55 33 0.65
ACGTcount: A:0.38, C:0.23, G:0.23, T:0.16
Consensus pattern (54 bp):
CCAGAACAGAAAATGTGACAGAGCCACCAGATCAGATAATTCGTGGCAGAGCCA
Found at i:49397450 original size:26 final size:26
Alignment explanation
Indices: 49397421--49397471 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
49397411 CATGCAAATG
* *
49397421 TGCTTATGCTTTAATGTG-GTTATGGC
1 TGCTTATG-GTTAATGAGTGTTATGGC
49397447 TGCTTATGGTTAATGAGTGTTATGG
1 TGCTTATGGTTAATGAGTGTTATGG
49397472 ATGGCATGTA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 7 0.32
26 15 0.68
ACGTcount: A:0.18, C:0.08, G:0.29, T:0.45
Consensus pattern (26 bp):
TGCTTATGGTTAATGAGTGTTATGGC
Found at i:49400300 original size:92 final size:92
Alignment explanation
Indices: 49400143--49400325 Score: 330
Period size: 92 Copynumber: 2.0 Consensus size: 92
49400133 GACACACGCT
* *
49400143 TGTGTCTCTGCCCGTGTGCCCAATTCTGAGCATTCTGTTCCTCAAAATTTTGGTGCAGGGGACAC
1 TGTGTCTCAGCCCGTGTGCCCAATTCTGAGCATTCTGTTCCTCAAAATGTTGGTGCAGGGGACAC
49400208 ACAGCCTAACCACACTCCCGTGTTACG
66 ACAGCCTAACCACACTCCCGTGTTACG
*
49400235 TGTGTCTCAGCTCGTGTGCCCAATTCTGAGCATTCTGTTCCTCAAAATGTTGGTGCAGGGGACAC
1 TGTGTCTCAGCCCGTGTGCCCAATTCTGAGCATTCTGTTCCTCAAAATGTTGGTGCAGGGGACAC
*
49400300 ACAGCCTAACCACACTCTCGTGTTAC
66 ACAGCCTAACCACACTCCCGTGTTAC
49400326 CAGGTCGTGT
Statistics
Matches: 87, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
92 87 1.00
ACGTcount: A:0.20, C:0.30, G:0.22, T:0.28
Consensus pattern (92 bp):
TGTGTCTCAGCCCGTGTGCCCAATTCTGAGCATTCTGTTCCTCAAAATGTTGGTGCAGGGGACAC
ACAGCCTAACCACACTCCCGTGTTACG
Found at i:49402075 original size:21 final size:17
Alignment explanation
Indices: 49402030--49402066 Score: 74
Period size: 17 Copynumber: 2.2 Consensus size: 17
49402020 TCAAAAGTTG
49402030 TTTATCTATCAATAATC
1 TTTATCTATCAATAATC
49402047 TTTATCTATCAATAATC
1 TTTATCTATCAATAATC
49402064 TTT
1 TTT
49402067 CATTTTCTAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.32, C:0.16, G:0.00, T:0.51
Consensus pattern (17 bp):
TTTATCTATCAATAATC
Found at i:49410418 original size:29 final size:29
Alignment explanation
Indices: 49410343--49410457 Score: 128
Period size: 29 Copynumber: 4.0 Consensus size: 29
49410333 TACATACATG
* *
49410343 CATATGGCCCATTAGGCTCAA-TC-TCATT
1 CATATGGCCCACTAGGCCCAATTCAT-ATT
49410371 CATATGGCCCATCTA-GCCCAATTCATATT
1 CATATGGCCCA-CTAGGCCCAATTCATATT
* * *
49410400 CTTATGGCCTACTAGGCCCAATTCACATT
1 CATATGGCCCACTAGGCCCAATTCATATT
* *
49410429 CATATGGCCCATTAGGCCCAAATCATATT
1 CATATGGCCCACTAGGCCCAATTCATATT
49410458 ATACTCATGC
Statistics
Matches: 73, Mismatches: 10, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
28 19 0.26
29 53 0.73
30 1 0.01
ACGTcount: A:0.27, C:0.30, G:0.13, T:0.30
Consensus pattern (29 bp):
CATATGGCCCACTAGGCCCAATTCATATT
Found at i:49410436 original size:58 final size:57
Alignment explanation
Indices: 49410345--49410457 Score: 156
Period size: 58 Copynumber: 2.0 Consensus size: 57
49410335 CATACATGCA
* * * *
49410345 TATGGCCCATTAGGCTCAATCTCATTCATATGGCCCATCTA-GCCCAATTCATATTCT
1 TATGGCCCACTAGGCCCAATCACATTCATATGGCCCAT-TAGGCCCAAATCATATTCT
*
49410402 TATGGCCTACTAGGCCCAATTCACATTCATATGGCCCATTAGGCCCAAATCATATT
1 TATGGCCCACTAGGCCCAA-TCACATTCATATGGCCCATTAGGCCCAAATCATATT
49410458 ATACTCATGC
Statistics
Matches: 49, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
57 18 0.37
58 31 0.63
ACGTcount: A:0.27, C:0.29, G:0.13, T:0.31
Consensus pattern (57 bp):
TATGGCCCACTAGGCCCAATCACATTCATATGGCCCATTAGGCCCAAATCATATTCT
Found at i:49410543 original size:17 final size:18
Alignment explanation
Indices: 49410521--49410564 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
49410511 TGCCTATTAT
49410521 AGGCCCA-ATAGCCCATC
1 AGGCCCATATAGCCCATC
*
49410538 AGGCCCATTTAGCCCATTC
1 AGGCCCATATAGCCCA-TC
*
49410557 TGGCCCAT
1 AGGCCCAT
49410565 TTGGCTAATT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 7 0.30
18 7 0.30
19 9 0.39
ACGTcount: A:0.23, C:0.39, G:0.18, T:0.20
Consensus pattern (18 bp):
AGGCCCATATAGCCCATC
Found at i:49410552 original size:18 final size:19
Alignment explanation
Indices: 49410529--49410566 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
49410519 ATAGGCCCAA
49410529 TAGCCCA-TCAGGCCCATT
1 TAGCCCATTCAGGCCCATT
*
49410547 TAGCCCATTCTGGCCCATT
1 TAGCCCATTCAGGCCCATT
49410566 T
1 T
49410567 GGCTAATTCT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 7 0.39
19 11 0.61
ACGTcount: A:0.18, C:0.37, G:0.16, T:0.29
Consensus pattern (19 bp):
TAGCCCATTCAGGCCCATT
Found at i:49411961 original size:8 final size:7
Alignment explanation
Indices: 49411951--49412004 Score: 54
Period size: 8 Copynumber: 6.9 Consensus size: 7
49411941 AAAATTTTAA
49411951 GATTTTG
1 GATTTTG
49411958 AGATTTTTG
1 -GA-TTTTG
49411967 GATTTTTG
1 GA-TTTTG
49411975 GATTTTTG
1 GA-TTTTG
49411983 GATTTTGG
1 GATTTT-G
49411991 GATTTTGG
1 GATTTT-G
49411999 GATTTT
1 GATTTT
49412005 TGGGGCGTTA
Statistics
Matches: 44, Mismatches: 0, Indels: 4
0.92 0.00 0.08
Matches are distributed among these distances:
7 4 0.09
8 35 0.80
9 5 0.11
ACGTcount: A:0.15, C:0.00, G:0.28, T:0.57
Consensus pattern (7 bp):
GATTTTG
Found at i:49411970 original size:16 final size:15
Alignment explanation
Indices: 49411951--49412004 Score: 72
Period size: 16 Copynumber: 3.4 Consensus size: 15
49411941 AAAATTTTAA
49411951 GATTTTGAGATTTTTG
1 GATTTTG-GATTTTTG
49411967 GATTTTTGGATTTTTG
1 GA-TTTTGGATTTTTG
*
49411983 GATTTTGGGATTTTGG
1 GATTTT-GGATTTTTG
49411999 GATTTT
1 GATTTT
49412005 TGGGGCGTTA
Statistics
Matches: 35, Mismatches: 1, Indels: 4
0.88 0.03 0.10
Matches are distributed among these distances:
15 4 0.11
16 26 0.74
17 5 0.14
ACGTcount: A:0.15, C:0.00, G:0.28, T:0.57
Consensus pattern (15 bp):
GATTTTGGATTTTTG
Found at i:49412005 original size:24 final size:24
Alignment explanation
Indices: 49411953--49412007 Score: 83
Period size: 24 Copynumber: 2.2 Consensus size: 24
49411943 AATTTTAAGA
* *
49411953 TTTTGAGATTTTTGGATTTTTGGAT
1 TTTTG-GATTTTGGGATTTTGGGAT
49411978 TTTTGGATTTTGGGATTTTGGGAT
1 TTTTGGATTTTGGGATTTTGGGAT
49412002 TTTTGG
1 TTTTGG
49412008 GGCGTTACAA
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
24 23 0.82
25 5 0.18
ACGTcount: A:0.13, C:0.00, G:0.29, T:0.58
Consensus pattern (24 bp):
TTTTGGATTTTGGGATTTTGGGAT
Found at i:49417148 original size:49 final size:49
Alignment explanation
Indices: 49416971--49417140 Score: 322
Period size: 49 Copynumber: 3.5 Consensus size: 49
49416961 TACATAATAG
*
49416971 TATATACGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 TATATGCGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
49417020 TATATGCGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 TATATGCGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
49417069 TATATGCGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 TATATGCGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
*
49417118 TATATGTGATAAGGCCTAATGGC
1 TATATGCGATAAGGCCTAATGGC
49417141 TAATGTGAAA
Statistics
Matches: 119, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 119 1.00
ACGTcount: A:0.33, C:0.11, G:0.28, T:0.29
Consensus pattern (49 bp):
TATATGCGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
Found at i:49417189 original size:48 final size:48
Alignment explanation
Indices: 49417118--49417293 Score: 289
Period size: 48 Copynumber: 3.7 Consensus size: 48
49417108 AAAGTGTATA
* * *
49417118 TATATGTGATAAGGCCTAATGGCTAATGTGAAATATATGTGTGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATG
* ** *
49417166 TATATGTGGTAAAGCCGAATGGCTAATGTGGAATATAAATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATG
49417214 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATG
49417262 TATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAA
49417294 TGTTGTAACA
Statistics
Matches: 117, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
48 117 1.00
ACGTcount: A:0.35, C:0.07, G:0.27, T:0.32
Consensus pattern (48 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATG
Found at i:49417239 original size:96 final size:96
Alignment explanation
Indices: 49417118--49417291 Score: 321
Period size: 96 Copynumber: 1.8 Consensus size: 96
49417108 AAAGTGTATA
* *
49417118 TATATGTGATAAGGCCTAATGGCTAATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCG
1 TATATGTGATAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCG
49417183 AATGGCTAATGTGGAATATAAATGAGATATG
66 AATGGCTAATGTGGAATATAAATGAGATATG
*
49417214 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCG
1 TATATGTGATAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCG
49417279 AATGGCTAATGTG
66 AATGGCTAATGTG
49417292 AATGTTGTAA
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
96 75 1.00
ACGTcount: A:0.34, C:0.07, G:0.27, T:0.32
Consensus pattern (96 bp):
TATATGTGATAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCG
AATGGCTAATGTGGAATATAAATGAGATATG
Found at i:49417387 original size:37 final size:37
Alignment explanation
Indices: 49417333--49417460 Score: 238
Period size: 37 Copynumber: 3.4 Consensus size: 37
49417323 AACTTGGAAA
*
49417333 TATGTTCCGGGTGAGACCCGATGACTACGTGTGGAGAT
1 TATG-TCCGGGTAAGACCCGATGACTACGTGTGGAGAT
49417371 TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
1 TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
49417408 TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
1 TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
49417445 TATGTCCGGGTAAGAC
1 TATGTCCGGGTAAGAC
49417461 TTCGTAATAA
Statistics
Matches: 89, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
37 85 0.96
38 4 0.04
ACGTcount: A:0.23, C:0.19, G:0.33, T:0.25
Consensus pattern (37 bp):
TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
Found at i:49428641 original size:11 final size:11
Alignment explanation
Indices: 49428625--49428654 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
49428615 ATTGTTCAAC
49428625 TATAATAATAA
1 TATAATAATAA
49428636 TATAATAATAA
1 TATAATAATAA
*
49428647 AATAATAA
1 TATAATAA
49428655 ATAGTTCTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (11 bp):
TATAATAATAA
Found at i:49436095 original size:68 final size:65
Alignment explanation
Indices: 49436030--49436237 Score: 201
Period size: 67 Copynumber: 3.2 Consensus size: 65
49436020 CATCATGTGT
*
49436030 ACAAGAAAGCTACGAGACATTATAATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATG
1 ACAAGAGAGCTACGAG--A-TATAATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATG
49436095 TAG
63 TAG
* * * * * * *
49436098 ACAAGAGAGCTACGGGATAT-ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATG
1 ACAAGAGAGCTACGAGATATAATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATG
49436162 TAG
63 TAG
* * * *
49436165 ACAAGAGAGCTACGAGATA-AACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-
1 ACAAGAGAGCTACGAGATATAA-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTA
49436226 G
65 G
49436227 TACAAGAGAGC
1 -ACAAGAGAGC
49436238 CGAACTATAT
Statistics
Matches: 116, Mismatches: 18, Indels: 17
0.77 0.12 0.11
Matches are distributed among these distances:
62 1 0.01
63 19 0.16
64 21 0.18
65 11 0.09
66 17 0.15
67 31 0.27
68 16 0.14
ACGTcount: A:0.32, C:0.17, G:0.28, T:0.22
Consensus pattern (65 bp):
ACAAGAGAGCTACGAGATATAATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG
Found at i:49439272 original size:45 final size:45
Alignment explanation
Indices: 49439219--49439306 Score: 167
Period size: 45 Copynumber: 2.0 Consensus size: 45
49439209 TTATGTGATC
49439219 TAAACTCATTGAGTTGTGGTCTGAGTTCATGATATATGTGACATA
1 TAAACTCATTGAGTTGTGGTCTGAGTTCATGATATATGTGACATA
*
49439264 TAAACTCATTGAGTTGTGGTCTGAGTTCATGATGTATGTGACA
1 TAAACTCATTGAGTTGTGGTCTGAGTTCATGATATATGTGACA
49439307 CATGTTTTGC
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.27, C:0.11, G:0.24, T:0.38
Consensus pattern (45 bp):
TAAACTCATTGAGTTGTGGTCTGAGTTCATGATATATGTGACATA
Found at i:49441139 original size:40 final size:40
Alignment explanation
Indices: 49441094--49441223 Score: 174
Period size: 40 Copynumber: 3.2 Consensus size: 40
49441084 CGGAATACAA
49441094 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* * *
49441134 CCGGATAGAACGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
49441174 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
49441214 CCGGATATAA
1 CCGGATATAA
49441224 TTTCCAGCAT
Statistics
Matches: 78, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
39 3 0.04
40 75 0.96
ACGTcount: A:0.24, C:0.29, G:0.25, T:0.22
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:49444593 original size:19 final size:19
Alignment explanation
Indices: 49444569--49444609 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
49444559 TTTTATTAAT
49444569 AAATAAT-AAATATAATATA
1 AAATAATGAAATA-AATATA
*
49444588 AAATAATGTAATAAATATA
1 AAATAATGAAATAAATATA
49444607 AAA
1 AAA
49444610 ATAGATTAGA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 16 0.80
20 4 0.20
ACGTcount: A:0.68, C:0.00, G:0.02, T:0.29
Consensus pattern (19 bp):
AAATAATGAAATAAATATA
Found at i:49445101 original size:21 final size:19
Alignment explanation
Indices: 49445065--49445105 Score: 64
Period size: 21 Copynumber: 2.1 Consensus size: 19
49445055 AATTATAAAA
49445065 AATTGTATTTTATATTTTT
1 AATTGTATTTTATATTTTT
49445084 AATTGATATTTATATATTTTT
1 AATTG-TATTT-TATATTTTT
49445105 A
1 A
49445106 TAATTAAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
19 5 0.25
20 5 0.25
21 10 0.50
ACGTcount: A:0.32, C:0.00, G:0.05, T:0.63
Consensus pattern (19 bp):
AATTGTATTTTATATTTTT
Found at i:49466228 original size:23 final size:23
Alignment explanation
Indices: 49466185--49466228 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 23
49466175 CATCATAATA
*
49466185 TCATCTATTTCATATCACAAAAC
1 TCATCTATATCATATCACAAAAC
*
49466208 TCATC-ATATCATCATCTCAAA
1 TCATCTATATCAT-ATCACAAA
49466229 CCAAACCAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 6 0.33
23 12 0.67
ACGTcount: A:0.39, C:0.27, G:0.00, T:0.34
Consensus pattern (23 bp):
TCATCTATATCATATCACAAAAC
Found at i:49470752 original size:39 final size:39
Alignment explanation
Indices: 49470707--49470788 Score: 137
Period size: 39 Copynumber: 2.1 Consensus size: 39
49470697 AATTGTTAGG
* *
49470707 GATCGACTTGTATAATCAACGAACAAGTAAAATTGAGAA
1 GATCGACTTATATAACCAACGAACAAGTAAAATTGAGAA
*
49470746 GATCGACTTATATAACCAACGAACATGTAAAATTGAGAA
1 GATCGACTTATATAACCAACGAACAAGTAAAATTGAGAA
49470785 GATC
1 GATC
49470789 AAACACATAA
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.45, C:0.15, G:0.17, T:0.23
Consensus pattern (39 bp):
GATCGACTTATATAACCAACGAACAAGTAAAATTGAGAA
Found at i:49472815 original size:9 final size:9
Alignment explanation
Indices: 49472803--49472871 Score: 68
Period size: 9 Copynumber: 7.4 Consensus size: 9
49472793 AAAAAATAGA
49472803 AAAAATTAT
1 AAAAATTAT
49472812 -AAAATTAT
1 AAAAATTAT
*
49472820 AAAAATTGT
1 AAAAATTAT
*
49472829 AAAAATATTGT
1 -AAAA-ATTAT
*
49472840 AAAACTTTAT
1 AAAA-ATTAT
*
49472850 AAAAATTGT
1 AAAAATTAT
49472859 AAAAATTAT
1 AAAAATTAT
49472868 AAAA
1 AAAA
49472872 TATATAGACA
Statistics
Matches: 50, Mismatches: 7, Indels: 6
0.79 0.11 0.10
Matches are distributed among these distances:
8 8 0.16
9 22 0.44
10 15 0.30
11 5 0.10
ACGTcount: A:0.61, C:0.01, G:0.04, T:0.33
Consensus pattern (9 bp):
AAAAATTAT
Found at i:49472815 original size:10 final size:10
Alignment explanation
Indices: 49472791--49472975 Score: 63
Period size: 9 Copynumber: 19.2 Consensus size: 10
49472781 TTAATAAAAA
49472791 ATAAAAAA-T
1 ATAAAAAATT
*
49472800 AGAAAAAATT
1 ATAAAAAATT
49472810 AT--AAAATT
1 ATAAAAAATT
49472818 AT-AAAAATT
1 ATAAAAAATT
*
49472827 GTAAAAATATT
1 ATAAAAA-ATT
* **
49472838 GTAAAACTTT
1 ATAAAAAATT
49472848 AT-AAAAATT
1 ATAAAAAATT
*
49472857 GT-AAAAATT
1 ATAAAAAATT
*
49472866 ATAAAATA-T
1 ATAAAAAATT
* *
49472875 AT-AGACATAT
1 ATAAAAAAT-T
*
49472885 AGAAAAAAATT
1 A-TAAAAAATT
49472896 AT--AAAATT
1 ATAAAAAATT
* ** * *
49472904 TTATCAAGTC
1 ATAAAAAATT
49472914 ATAAGAAAATT
1 ATAA-AAAATT
*
49472925 ATAAAAAAAT
1 ATAAAAAATT
49472935 ATAAAGAAA-T
1 ATAAA-AAATT
**
49472945 ATAAAATTCTT
1 ATAAAA-AATT
49472956 A-AAAAAATT
1 ATAAAAAATT
49472965 AT-AAAAATT
1 ATAAAAAATT
49472974 AT
1 AT
49472976 CGTACCAAAA
Statistics
Matches: 129, Mismatches: 31, Indels: 32
0.67 0.16 0.17
Matches are distributed among these distances:
8 18 0.14
9 44 0.34
10 40 0.31
11 23 0.18
12 4 0.03
ACGTcount: A:0.62, C:0.03, G:0.05, T:0.31
Consensus pattern (10 bp):
ATAAAAAATT
Found at i:49472815 original size:19 final size:19
Alignment explanation
Indices: 49472791--49472871 Score: 69
Period size: 19 Copynumber: 4.3 Consensus size: 19
49472781 TTAATAAAAA
*
49472791 ATAAAAAATAGAAAAAATT
1 ATAAAAAATAGTAAAAATT
*
49472810 AT-AAAATTA-TAAAAATT
1 ATAAAAAATAGTAAAAATT
* * *
49472827 GTAAAAATATTGTAAAACTT
1 ATAAAAA-ATAGTAAAAATT
*
49472847 -TATAAAAATTGTAAAAATT
1 ATA-AAAAATAGTAAAAATT
49472866 ATAAAA
1 ATAAAA
49472872 TATATAGACA
Statistics
Matches: 50, Mismatches: 7, Indels: 10
0.75 0.10 0.15
Matches are distributed among these distances:
17 8 0.16
18 10 0.20
19 19 0.38
20 13 0.26
ACGTcount: A:0.63, C:0.01, G:0.05, T:0.31
Consensus pattern (19 bp):
ATAAAAAATAGTAAAAATT
Found at i:49473237 original size:19 final size:19
Alignment explanation
Indices: 49473193--49473233 Score: 68
Period size: 18 Copynumber: 2.3 Consensus size: 19
49473183 AATTTTAAAA
49473193 TTTT-TAATTTTTTACTAT
1 TTTTATAATTTTTTACTAT
49473211 TTTTATAATTTTTT-CTAT
1 TTTTATAATTTTTTACTAT
49473229 TTTTA
1 TTTTA
49473234 ATAAATTTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
18 13 0.59
19 9 0.41
ACGTcount: A:0.22, C:0.05, G:0.00, T:0.73
Consensus pattern (19 bp):
TTTTATAATTTTTTACTAT
Found at i:49473242 original size:19 final size:19
Alignment explanation
Indices: 49473181--49473291 Score: 70
Period size: 19 Copynumber: 5.9 Consensus size: 19
49473171 ATGATTTTTC
* *
49473181 TAAATTTTAAAATTTTTAA
1 TAAATTTTTATATTTTTAA
49473200 T---TTTTTACTATTTTT-A
1 TAAATTTTTA-TATTTTTAA
* *
49473216 TAATTTTTTCTATTTTTAA
1 TAAATTTTTATATTTTTAA
* * *
49473235 TAAATTTTAAATAATTTTAT
1 TAAATTTT-TATATTTTTAA
* *
49473255 TAAAATTTAATATTTTT-A
1 TAAATTTTTATATTTTTAA
*
49473273 TAAATTTTATTTATTTTTA
1 TAAATTTT-TATATTTTTA
49473292 GTTTTTATAA
Statistics
Matches: 70, Mismatches: 14, Indels: 15
0.71 0.14 0.15
Matches are distributed among these distances:
16 7 0.10
17 6 0.09
18 14 0.20
19 29 0.41
20 14 0.20
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (19 bp):
TAAATTTTTATATTTTTAA
Found at i:49473541 original size:3 final size:3
Alignment explanation
Indices: 49473535--49473573 Score: 78
Period size: 3 Copynumber: 13.0 Consensus size: 3
49473525 AAAGTAAAGA
49473535 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
49473574 TAAGTTTAAA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:49474096 original size:2 final size:2
Alignment explanation
Indices: 49474089--49474130 Score: 77
Period size: 2 Copynumber: 21.5 Consensus size: 2
49474079 ATAATTCCTC
49474089 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -T AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
49474130 A
1 A
49474131 AGTTCTGTTT
Statistics
Matches: 39, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 38 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:49479235 original size:19 final size:20
Alignment explanation
Indices: 49479194--49479236 Score: 52
Period size: 19 Copynumber: 2.2 Consensus size: 20
49479184 TTTTGTAAAG
* *
49479194 TTTGTAAAATAGATGGTACT
1 TTTGTAAAATAGATGGAAAT
*
49479214 TTTGTGAAATA-ATGGAAAT
1 TTTGTAAAATAGATGGAAAT
49479233 TTTG
1 TTTG
49479237 GCTTGCTATA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
19 10 0.50
20 10 0.50
ACGTcount: A:0.35, C:0.02, G:0.21, T:0.42
Consensus pattern (20 bp):
TTTGTAAAATAGATGGAAAT
Found at i:49479779 original size:48 final size:47
Alignment explanation
Indices: 49479673--49479887 Score: 179
Period size: 46 Copynumber: 4.6 Consensus size: 47
49479663 TGATATGTGT
* * * * ** *
49479673 GCTAGTGTAAGACATGTGTGGGACATGCATTGGCCAC-ATTACG-AGA
1 GCTAGTGTAAGACATGTCTAGGACATGCATCGGCCTCGAGAATGCA-A
* *
49479719 GCCAGTGTAAGACATATCTAGGACATGCATCGGCCTCGAGAGATGCAA
1 GCTAGTGTAAGACATGTCTAGGACATGCATCGGCCTCGAGA-ATGCAA
* ** * *
49479767 G-TCAGTGTAAGACATGTCTGGGACATGCATCAACATTGAGAA-G-AGA
1 GCT-AGTGTAAGACATGTCTAGGACATGCATCGGCCTCGAGAATGCA-A
* * *
49479813 GCTAGTGCAAGACATGTCTAGGACTTGCATCGGCCTCGAGATATACAA
1 GCTAGTGTAAGACATGTCTAGGACATGCATCGGCCTCGAGA-ATGCAA
* *
49479861 GCTAGTGTAAGACCTGTCTGGGACATG
1 GCTAGTGTAAGACATGTCTAGGACATG
49479888 GCGTCAGCTT
Statistics
Matches: 132, Mismatches: 28, Indels: 16
0.75 0.16 0.09
Matches are distributed among these distances:
45 1 0.01
46 65 0.49
47 4 0.03
48 60 0.45
49 2 0.02
ACGTcount: A:0.30, C:0.20, G:0.28, T:0.22
Consensus pattern (47 bp):
GCTAGTGTAAGACATGTCTAGGACATGCATCGGCCTCGAGAATGCAA
Found at i:49479842 original size:94 final size:93
Alignment explanation
Indices: 49479673--49479887 Score: 274
Period size: 94 Copynumber: 2.3 Consensus size: 93
49479663 TGATATGTGT
* * * *
49479673 GCTAGTGTAAGACATGTGTGGGACATGCATTGGCCACATTACGAGAGCCAGTGTAAGACATATCT
1 GCTAGTGTAAGACATGTCTGGGACATGCATT-GCAACATTAAGAGAGCCAGTGCAAGACATATCT
*
49479738 AGGACATGCATCGGCCTCGAGAGATGCAA
65 AGGACATGCATCGGCCTCGAGAGATACAA
* *
49479767 G-TCAGTGTAAGACATGTCTGGGACATGCA-T-CAACATTGAGAAGAGAGCTAGTGCAAGACATG
1 GCT-AGTGTAAGACATGTCTGGGACATGCATTGCAACATT---AAGAGAGCCAGTGCAAGACATA
* *
49479829 TCTAGGACTTGCATCGGCCTCGAGATATACAA
62 TCTAGGACATGCATCGGCCTCGAGAGATACAA
*
49479861 GCTAGTGTAAGACCTGTCTGGGACATG
1 GCTAGTGTAAGACATGTCTGGGACATG
49479888 GCGTCAGCTT
Statistics
Matches: 106, Mismatches: 10, Indels: 10
0.84 0.08 0.08
Matches are distributed among these distances:
91 6 0.06
93 2 0.02
94 97 0.92
95 1 0.01
ACGTcount: A:0.30, C:0.20, G:0.28, T:0.22
Consensus pattern (93 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATTGCAACATTAAGAGAGCCAGTGCAAGACATATCTA
GGACATGCATCGGCCTCGAGAGATACAA
Found at i:49479995 original size:49 final size:49
Alignment explanation
Indices: 49479910--49480029 Score: 154
Period size: 49 Copynumber: 2.4 Consensus size: 49
49479900 TGTGTGTTAA
* * *
49479910 TGTAAGACCTGTCTGGGACATGGCATCGACACCGATAGATGAGAGTCAG
1 TGTAAGACCTGTCTGGGATATGACATCGACACCGATAGATGAAAGTCAG
*
49479959 TGTAAGACCTGTCTGGGATATGACACTC-AC-CTCGATATATGAAAGTCAG
1 TGTAAGACCTGTCTGGGATATGACA-TCGACAC-CGATAGATGAAAGTCAG
* *
49480008 TGTAAGACCTATCTAGGATATG
1 TGTAAGACCTGTCTGGGATATG
49480030 GCATTGACTT
Statistics
Matches: 63, Mismatches: 6, Indels: 4
0.86 0.08 0.05
Matches are distributed among these distances:
48 1 0.02
49 60 0.95
50 2 0.03
ACGTcount: A:0.30, C:0.19, G:0.26, T:0.25
Consensus pattern (49 bp):
TGTAAGACCTGTCTGGGATATGACATCGACACCGATAGATGAAAGTCAG
Found at i:49489507 original size:30 final size:30
Alignment explanation
Indices: 49489473--49489532 Score: 102
Period size: 30 Copynumber: 2.0 Consensus size: 30
49489463 TAATTTATTA
49489473 TTAATTTCGTTATTATTTTAAAGACATTTG
1 TTAATTTCGTTATTATTTTAAAGACATTTG
* *
49489503 TTAATTTTGTTATTATTTTAGAGACATTTG
1 TTAATTTCGTTATTATTTTAAAGACATTTG
49489533 GTTGTTAAGT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.28, C:0.05, G:0.12, T:0.55
Consensus pattern (30 bp):
TTAATTTCGTTATTATTTTAAAGACATTTG
Found at i:49497230 original size:24 final size:24
Alignment explanation
Indices: 49497203--49497250 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
49497193 TAAACTTTGG
49497203 AACCTTACTTTATGACTTAAATAT
1 AACCTTACTTTATGACTTAAATAT
49497227 AACCTTACTTTATGACTTAAATAT
1 AACCTTACTTTATGACTTAAATAT
49497251 GTTCAAATAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.38, C:0.17, G:0.04, T:0.42
Consensus pattern (24 bp):
AACCTTACTTTATGACTTAAATAT
Found at i:49498197 original size:18 final size:17
Alignment explanation
Indices: 49498153--49498198 Score: 56
Period size: 18 Copynumber: 2.6 Consensus size: 17
49498143 ATTAACCTCC
49498153 AAAATATTATATTAAAAT
1 AAAATATTA-ATTAAAAT
*
49498171 AAATTATTAATTAAAATT
1 AAAATATTAATTAAAA-T
*
49498189 AAAAAATTAA
1 AAAATATTAA
49498199 AAATATATAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
17 7 0.29
18 17 0.71
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (17 bp):
AAAATATTAATTAAAAT
Found at i:49500905 original size:10 final size:10
Alignment explanation
Indices: 49500892--49500919 Score: 56
Period size: 10 Copynumber: 2.8 Consensus size: 10
49500882 TCAGCATCTT
49500892 TCAAGCATTA
1 TCAAGCATTA
49500902 TCAAGCATTA
1 TCAAGCATTA
49500912 TCAAGCAT
1 TCAAGCAT
49500920 GTGGTCAATC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.39, C:0.21, G:0.11, T:0.29
Consensus pattern (10 bp):
TCAAGCATTA
Found at i:49502066 original size:20 final size:20
Alignment explanation
Indices: 49502041--49502081 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
49502031 GATAAGTATA
49502041 TTAATCAATTCAATCTACTT
1 TTAATCAATTCAATCTACTT
*
49502061 TTAATCAATTCAATTTACTT
1 TTAATCAATTCAATCTACTT
49502081 T
1 T
49502082 ATCATGCTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.34, C:0.17, G:0.00, T:0.49
Consensus pattern (20 bp):
TTAATCAATTCAATCTACTT
Found at i:49507475 original size:17 final size:17
Alignment explanation
Indices: 49507453--49507489 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
49507443 AATGGGAATA
* *
49507453 AAAAGAAATAAATAAAG
1 AAAAGAAAGAAAGAAAG
49507470 AAAAGAAAGAAAGAAAG
1 AAAAGAAAGAAAGAAAG
49507487 AAA
1 AAA
49507490 GTTAAACAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.78, C:0.00, G:0.16, T:0.05
Consensus pattern (17 bp):
AAAAGAAAGAAAGAAAG
Found at i:49508056 original size:24 final size:24
Alignment explanation
Indices: 49508024--49508095 Score: 144
Period size: 24 Copynumber: 3.0 Consensus size: 24
49508014 AATCGAATGT
49508024 AAAAGAAAATATAAATTGAATTAC
1 AAAAGAAAATATAAATTGAATTAC
49508048 AAAAGAAAATATAAATTGAATTAC
1 AAAAGAAAATATAAATTGAATTAC
49508072 AAAAGAAAATATAAATTGAATTAC
1 AAAAGAAAATATAAATTGAATTAC
49508096 TTCAATTAAA
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 48 1.00
ACGTcount: A:0.62, C:0.04, G:0.08, T:0.25
Consensus pattern (24 bp):
AAAAGAAAATATAAATTGAATTAC
Found at i:49508781 original size:24 final size:23
Alignment explanation
Indices: 49508744--49508790 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 23
49508734 CTACCCAAAA
49508744 TAAAATAAAAACAAAAAATAAAC
1 TAAAATAAAAACAAAAAATAAAC
* *
49508767 TAAAACTAAATACAAGAAATAAAC
1 TAAAA-TAAAAACAAAAAATAAAC
49508791 AAGCAAAGGA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
23 5 0.24
24 16 0.76
ACGTcount: A:0.72, C:0.11, G:0.02, T:0.15
Consensus pattern (23 bp):
TAAAATAAAAACAAAAAATAAAC
Found at i:49512027 original size:30 final size:30
Alignment explanation
Indices: 49511953--49512081 Score: 93
Period size: 30 Copynumber: 4.3 Consensus size: 30
49511943 AACTGCTAGC
* * * *
49511953 TTAATTATATAATGAGAAATCGTGTTTACG
1 TTAATTATATTATGAGAAAGCATGTTTACA
* *
49511983 TTAATTAAACTATGAGAAAGCAT-TTATACA
1 TTAATTATATTATGAGAAAGCATGTT-TACA
* *
49512013 TTAATTATATTATGAAAAAGTGTATGTTTACA
1 TTAATTATATTATGAGAAA--GCATGTTTACA
* * * *
49512045 TTAACTATACTATGA-AAA-TATGTTAACA
1 TTAATTATATTATGAGAAAGCATGTTTACA
*
49512073 TTAACTATA
1 TTAATTATA
49512082 AAATGGTAAG
Statistics
Matches: 82, Mismatches: 13, Indels: 10
0.78 0.12 0.10
Matches are distributed among these distances:
28 18 0.22
29 2 0.02
30 37 0.45
31 3 0.04
32 20 0.24
33 2 0.02
ACGTcount: A:0.43, C:0.08, G:0.11, T:0.39
Consensus pattern (30 bp):
TTAATTATATTATGAGAAAGCATGTTTACA
Found at i:49512106 original size:14 final size:14
Alignment explanation
Indices: 49512089--49512115 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
49512079 ATAAAATGGT
49512089 AAGAAAAAAAAATA
1 AAGAAAAAAAAATA
49512103 AAGAAAAAAAAAT
1 AAGAAAAAAAAAT
49512116 CACTAATTTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.85, C:0.00, G:0.07, T:0.07
Consensus pattern (14 bp):
AAGAAAAAAAAATA
Found at i:49512842 original size:11 final size:11
Alignment explanation
Indices: 49512826--49512850 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
49512816 TAGGAAGCTC
49512826 ATATATTCTAT
1 ATATATTCTAT
49512837 ATATATTCTAT
1 ATATATTCTAT
49512848 ATA
1 ATA
49512851 ATATACACAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.40, C:0.08, G:0.00, T:0.52
Consensus pattern (11 bp):
ATATATTCTAT
Found at i:49515624 original size:16 final size:18
Alignment explanation
Indices: 49515603--49515642 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
49515593 TTTGCCATTA
*
49515603 CTTTTAC-TT-TTTTTTT
1 CTTTTACATTATTTTTTC
49515619 CTTTTACATTATTTTTTC
1 CTTTTACATTATTTTTTC
49515637 CTTTTA
1 CTTTTA
49515643 TAATGTTTGA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 7 0.33
17 2 0.10
18 12 0.57
ACGTcount: A:0.12, C:0.15, G:0.00, T:0.72
Consensus pattern (18 bp):
CTTTTACATTATTTTTTC
Found at i:49515677 original size:26 final size:26
Alignment explanation
Indices: 49515626--49515679 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
49515616 TTTCTTTTAC
49515626 ATTATTTTTTCCTTTTATAATGTTTG
1 ATTATTTTTTCCTTTTATAATGTTTG
49515652 ATTATTTTTTCCTTTTATAATGTTTG
1 ATTATTTTTTCCTTTTATAATGTTTG
49515678 AT
1 AT
49515680 AATATCAGTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.20, C:0.07, G:0.07, T:0.65
Consensus pattern (26 bp):
ATTATTTTTTCCTTTTATAATGTTTG
Found at i:49516154 original size:2 final size:2
Alignment explanation
Indices: 49516149--49516183 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
49516139 AGTAAAAAAG
49516149 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
49516184 CTATTTATAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:49520022 original size:5 final size:5
Alignment explanation
Indices: 49520012--49520036 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
49520002 TTGAAGCATT
49520012 AGTCC AGTCC AGTCC AGTCC AGTCC
1 AGTCC AGTCC AGTCC AGTCC AGTCC
49520037 GTACAACTTG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.20, C:0.40, G:0.20, T:0.20
Consensus pattern (5 bp):
AGTCC
Found at i:49524954 original size:2 final size:2
Alignment explanation
Indices: 49524947--49524988 Score: 84
Period size: 2 Copynumber: 21.0 Consensus size: 2
49524937 TAGAGGATAC
49524947 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
49524989 TAGCTTCTAA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:49525673 original size:30 final size:28
Alignment explanation
Indices: 49525630--49525686 Score: 69
Period size: 30 Copynumber: 2.0 Consensus size: 28
49525620 GATTCATCCA
*
49525630 TGGAAAATAAAATACTGAAAAGGATGATAT
1 TGGAAAATAAAATAAT-AAAA-GATGATAT
* *
49525660 TGGAAAGTGAAATAATAAAAGATGATA
1 TGGAAAATAAAATAATAAAAGATGATA
49525687 AATGATAAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
28 7 0.29
29 4 0.17
30 13 0.54
ACGTcount: A:0.54, C:0.02, G:0.21, T:0.23
Consensus pattern (28 bp):
TGGAAAATAAAATAATAAAAGATGATAT
Found at i:49526274 original size:45 final size:45
Alignment explanation
Indices: 49526223--49526310 Score: 167
Period size: 45 Copynumber: 2.0 Consensus size: 45
49526213 TGAATTGAGT
*
49526223 ATGAATTGTATTAAATTGATGTTAAATTTACATGTATAGATCTAG
1 ATGAATTGTATTAAATTGATGTTAAATTTACACGTATAGATCTAG
49526268 ATGAATTGTATTAAATTGATGTTAAATTTACACGTATAGATCT
1 ATGAATTGTATTAAATTGATGTTAAATTTACACGTATAGATCT
49526311 GGATAGACCA
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.38, C:0.06, G:0.15, T:0.42
Consensus pattern (45 bp):
ATGAATTGTATTAAATTGATGTTAAATTTACACGTATAGATCTAG
Found at i:49526900 original size:23 final size:23
Alignment explanation
Indices: 49526873--49526917 Score: 81
Period size: 23 Copynumber: 2.0 Consensus size: 23
49526863 CCTGTTACAT
49526873 GGCTCTTTGTGAGCTTCCTGATA
1 GGCTCTTTGTGAGCTTCCTGATA
*
49526896 GGCTCTTTGTGAGTTTCCTGAT
1 GGCTCTTTGTGAGCTTCCTGAT
49526918 TAAAAGTTAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.11, C:0.20, G:0.27, T:0.42
Consensus pattern (23 bp):
GGCTCTTTGTGAGCTTCCTGATA
Found at i:49534414 original size:23 final size:23
Alignment explanation
Indices: 49534380--49534424 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
49534370 CTTGTTTCAT
*
49534380 GGCTCTTTGTGAGCTTCCTAATA
1 GGCTCTTCGTGAGCTTCCTAATA
*
49534403 GGCTCTTCGTGAGTTTCCTAAT
1 GGCTCTTCGTGAGCTTCCTAAT
49534425 TAAAAGTTCT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.16, C:0.22, G:0.22, T:0.40
Consensus pattern (23 bp):
GGCTCTTCGTGAGCTTCCTAATA
Found at i:49535675 original size:13 final size:13
Alignment explanation
Indices: 49535657--49535684 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
49535647 ACAAAATTGA
49535657 AAAGATGATAAAT
1 AAAGATGATAAAT
49535670 AAAGATGATAAAT
1 AAAGATGATAAAT
49535683 AA
1 AA
49535685 TAAAATAAAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.64, C:0.00, G:0.14, T:0.21
Consensus pattern (13 bp):
AAAGATGATAAAT
Found at i:49540337 original size:48 final size:48
Alignment explanation
Indices: 49540279--49540546 Score: 251
Period size: 48 Copynumber: 5.6 Consensus size: 48
49540269 GTGTGTTAGC
*
49540279 TAAGACCATGTTTGGGACATGGCATCGGCCAAGATATGAGAGCCAGAG
1 TAAGACCATGTTTGGGACATGGCATCGGCCAAGATATGAGAGCCAGTG
* * **
49540327 TAAGATCATGTTTGGAACATGATATCGG-CAATG-TAATGAGAGCCAGTG
1 TAAGACCATGTTTGGGACATGGCATCGGCCAA-GAT-ATGAGAGCCAGTG
* * * * * *
49540375 TAAGACAATGTCTGGGGCATGGCATCGG-CATTGATATGTGAGCTAGTG
1 TAAGACCATGTTTGGGACATGGCATCGGCCA-AGATATGAGAGCCAGTG
* * * * *
49540423 TAAGACCATGTTTGGGCCATGGCATTGACCACA-TTAAGAGAGCCAGTG
1 TAAGACCATGTTTGGGACATGGCATCGGCCA-AGATATGAGAGCCAGTG
* * *
49540471 TAAGACCATGTCTGGGACATGGCATCGGCCTCAACATGTGA-A-CCAGTG
1 TAAGACCATGTTTGGGACATGGCATCGG-C-CAAGATATGAGAGCCAGTG
* *
49540519 TAAGACCATGTTTGGAACATGGAATCGG
1 TAAGACCATGTTTGGGACATGGCATCGG
49540547 TAAGTCACCC
Statistics
Matches: 176, Mismatches: 36, Indels: 16
0.77 0.16 0.07
Matches are distributed among these distances:
47 4 0.02
48 161 0.91
49 6 0.03
50 5 0.03
ACGTcount: A:0.29, C:0.18, G:0.29, T:0.24
Consensus pattern (48 bp):
TAAGACCATGTTTGGGACATGGCATCGGCCAAGATATGAGAGCCAGTG
Found at i:49540426 original size:96 final size:96
Alignment explanation
Indices: 49540279--49540539 Score: 305
Period size: 96 Copynumber: 2.7 Consensus size: 96
49540269 GTGTGTTAGC
* * * *
49540279 TAAGACCATGTTTGGGACATGGCATCGGCCA-AGATATGAGAGCCAGAGTAAGATCATGTTTGGA
1 TAAGACCATGTCTGGGACATGGCATCGG-CATAGATATGTGAGCCAGTGTAAGACCATGTTTGGA
* *
49540343 ACATGATATCG-GCA-ATGTAATGAGAGCCAGTG
65 ACATGACATCGACCACAT-TAA-GAGAGCCAGTG
* * * * **
49540375 TAAGACAATGTCTGGGGCATGGCATCGGCATTGATATGTGAGCTAGTGTAAGACCATGTTTGGGC
1 TAAGACCATGTCTGGGACATGGCATCGGCATAGATATGTGAGCCAGTGTAAGACCATGTTTGGAA
* *
49540440 CATGGCATTGACCACATTAAGAGAGCCAGTG
66 CATGACATCGACCACATTAAGAGAGCCAGTG
* * *
49540471 TAAGACCATGTCTGGGACATGGCATCGGCCTCA-ACATGTGAACCAGTGTAAGACCATGTTTGGA
1 TAAGACCATGTCTGGGACATGGCATCGGCAT-AGATATGTGAGCCAGTGTAAGACCATGTTTGGA
49540535 ACATG
65 ACATG
49540540 GAATCGGTAA
Statistics
Matches: 138, Mismatches: 23, Indels: 8
0.82 0.14 0.05
Matches are distributed among these distances:
95 2 0.01
96 129 0.93
97 5 0.04
98 2 0.01
ACGTcount: A:0.30, C:0.18, G:0.29, T:0.24
Consensus pattern (96 bp):
TAAGACCATGTCTGGGACATGGCATCGGCATAGATATGTGAGCCAGTGTAAGACCATGTTTGGAA
CATGACATCGACCACATTAAGAGAGCCAGTG
Found at i:49540540 original size:144 final size:144
Alignment explanation
Indices: 49540279--49540546 Score: 315
Period size: 144 Copynumber: 1.9 Consensus size: 144
49540269 GTGTGTTAGC
* * * *
49540279 TAAGACCATGTTTGGGACATGGCATCGGCCAAGATATGAGAGCCAGAGTAAGATCATGTTTGGAA
1 TAAGACCATGTTTGGGACATGGCATCGACCAAGATAAGAGAGCCAGAGTAAGACCATGTCTGGAA
* ** * ** *
49540344 CATGATATCGGCAATGTAATGAGAGCCAGTGTAAGACAATGTCTGGGGCATGGCATCGGCATTGA
66 CATGACATCGGCAATCAAATGAGAACCAGTGTAAGACAATGTCTGGAACATGGAATCGGCATTGA
49540409 TATGTGAGCTAGTG
131 TATGTGAGCTAGTG
* * * * *
49540423 TAAGACCATGTTTGGGCCATGGCATTGACCACA-TTAAGAGAGCCAGTGTAAGACCATGTCTGGG
1 TAAGACCATGTTTGGGACATGGCATCGACCA-AGATAAGAGAGCCAGAGTAAGACCATGTCTGGA
* * * * *
49540487 ACATGGCATCGGC-CTCAACATGTGAACCAGTGTAAGACCATGTTTGGAACATGGAATCGG
65 ACATGACATCGGCAATCAA-ATGAGAACCAGTGTAAGACAATGTCTGGAACATGGAATCGG
49540547 TAAGTCACCC
Statistics
Matches: 101, Mismatches: 21, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
143 2 0.02
144 98 0.97
145 1 0.01
ACGTcount: A:0.29, C:0.18, G:0.29, T:0.24
Consensus pattern (144 bp):
TAAGACCATGTTTGGGACATGGCATCGACCAAGATAAGAGAGCCAGAGTAAGACCATGTCTGGAA
CATGACATCGGCAATCAAATGAGAACCAGTGTAAGACAATGTCTGGAACATGGAATCGGCATTGA
TATGTGAGCTAGTG
Found at i:49546448 original size:79 final size:80
Alignment explanation
Indices: 49546352--49546531 Score: 206
Period size: 79 Copynumber: 2.3 Consensus size: 80
49546342 TCGCTCCAAT
** * * * *
49546352 GCCTTCGGGACGAAGCCCGG-TTATAGTGACTCGCACGAATGCCTTCGGGA-CTTAACCCGGGTT
1 GCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACGAATGCCTTC-GGATCCTAACCCGGATA
49546415 TAGTAACTT-GCACAAA
64 TAGTAACTTAGCACAAA
* * **
49546431 TGCCTTTGGG-CTTAGCCCGGATTTATTAACTCGCACGAATGCCTTCGGATCCTAGTCCGGATAT
1 -GCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAATGCCTTCGGATCCTAACCCGGATAT
*
49546495 AGTCACTTAGCACAAA
65 AGTAACTTAGCACAAA
49546511 GCCTTCGGGACTTAGCCCGGA
1 GCCTTCGGGACTTAGCCCGGA
49546532 CATCATTCGA
Statistics
Matches: 84, Mismatches: 12, Indels: 8
0.81 0.12 0.08
Matches are distributed among these distances:
78 3 0.04
79 53 0.63
80 28 0.33
ACGTcount: A:0.23, C:0.27, G:0.25, T:0.25
Consensus pattern (80 bp):
GCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAATGCCTTCGGATCCTAACCCGGATATA
GTAACTTAGCACAAA
Found at i:49546461 original size:39 final size:40
Alignment explanation
Indices: 49546349--49546531 Score: 176
Period size: 40 Copynumber: 4.6 Consensus size: 40
49546339 GACTCGCTCC
** * * *
49546349 AATGCCTTCGGGACGAAGCCCGG-TTATAGTGACTCGCACG
1 AATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTTGCACA
* *
49546389 AATGCCTTCGGGACTTAACCCGGGTTTAGTAACTTGCACA
1 AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTTGCACA
* * * *
49546429 AATGCCTTTGGG-CTTAGCCCGGATTTATTAACTCGCACG
1 AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTTGCACA
* * * *
49546468 AATGCCTTC-GGATCCTAGTCCGGATATAGTCACTTAGCACA
1 AATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTT-GCACA
49546509 AA-GCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
49546532 CATCATTCGA
Statistics
Matches: 116, Mismatches: 22, Indels: 10
0.78 0.15 0.07
Matches are distributed among these distances:
38 2 0.02
39 30 0.26
40 73 0.63
41 11 0.09
ACGTcount: A:0.23, C:0.27, G:0.25, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTTGCACA
Found at i:49557174 original size:30 final size:29
Alignment explanation
Indices: 49557121--49557193 Score: 83
Period size: 30 Copynumber: 2.5 Consensus size: 29
49557111 GACAAGATTG
* * * **
49557121 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGCTGAAAA-TACACA
*
49557151 GCACTAAGTGTGCGAGCTGAAAATACATA
1 GCACTAAGTGTGCGAGCTGAAAATACACA
49557180 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
49557194 GATTCACTAT
Statistics
Matches: 37, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
29 17 0.46
30 20 0.54
ACGTcount: A:0.32, C:0.16, G:0.27, T:0.25
Consensus pattern (29 bp):
GCACTAAGTGTGCGAGCTGAAAATACACA
Found at i:49560975 original size:30 final size:30
Alignment explanation
Indices: 49560939--49561069 Score: 171
Period size: 30 Copynumber: 4.5 Consensus size: 30
49560929 GACAAGATTG
* * * * *
49560939 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
*
49560969 GCACTAAGTGTGCGAGTTTG---ATTATATA
1 GCACTAAGTGTGCGAG-CTGAAAATTATATA
49560997 GCACTAAGTGTGCGAGCTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
49561027 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
49561056 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
49561070 GATTCACTAT
Statistics
Matches: 92, Mismatches: 5, Indels: 9
0.87 0.05 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.24
29 20 0.22
30 46 0.50
31 2 0.02
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGCTGAAAATTATATA
Found at i:49561030 original size:58 final size:58
Alignment explanation
Indices: 49560939--49561069 Score: 174
Period size: 58 Copynumber: 2.2 Consensus size: 58
49560929 GACAAGATTG
* * * * * *
49560939 GCACTAAGTGTGCGGGTTTAAAATTGTACAGCACTAAGTGTGCGAGTTTG-ATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAG-CTGAAATATATA
*
49560997 GCACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAGCTG-AAATATATA
49561056 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
49561070 GATTCACTAT
Statistics
Matches: 64, Mismatches: 7, Indels: 3
0.86 0.09 0.04
Matches are distributed among these distances:
57 2 0.03
58 41 0.64
59 21 0.33
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (58 bp):
GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAGCTGAAATATATA
Found at i:49568925 original size:30 final size:30
Alignment explanation
Indices: 49568889--49569019 Score: 171
Period size: 30 Copynumber: 4.5 Consensus size: 30
49568879 GACAAGATTG
* * * * *
49568889 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
*
49568919 GCACTAAGTGTGCGAGTTTG---ATTATATA
1 GCACTAAGTGTGCGAG-CTGAAAATTATATA
49568947 GCACTAAGTGTGCGAGCTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
49568977 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
49569006 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
49569020 GATTCACTAT
Statistics
Matches: 92, Mismatches: 5, Indels: 9
0.87 0.05 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.24
29 20 0.22
30 46 0.50
31 2 0.02
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGCTGAAAATTATATA
Found at i:49568980 original size:58 final size:58
Alignment explanation
Indices: 49568889--49569019 Score: 174
Period size: 58 Copynumber: 2.2 Consensus size: 58
49568879 GACAAGATTG
* * * * * *
49568889 GCACTAAGTGTGCGGGTTTAAAATTGTACAGCACTAAGTGTGCGAGTTTG-ATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAG-CTGAAATATATA
*
49568947 GCACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAGCTG-AAATATATA
49569006 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
49569020 GATTCACTAT
Statistics
Matches: 64, Mismatches: 7, Indels: 3
0.86 0.09 0.04
Matches are distributed among these distances:
57 2 0.03
58 41 0.64
59 21 0.33
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (58 bp):
GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAGCTGAAATATATA
Found at i:49576120 original size:30 final size:30
Alignment explanation
Indices: 49576084--49576184 Score: 118
Period size: 28 Copynumber: 3.5 Consensus size: 30
49576074 GACAAGATTG
* * *
49576084 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
49576114 GCACTAAGTGTGCGAGTTT--GATTCTATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
49576142 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
49576171 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
49576185 GATTCACTAT
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
28 23 0.38
29 19 0.31
30 19 0.31
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.29
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGTTTAAAATTATATA
Found at i:49576196 original size:29 final size:28
Alignment explanation
Indices: 49576113--49576188 Score: 75
Period size: 29 Copynumber: 2.7 Consensus size: 28
49576103 AAAATTGTAC
* *
49576113 AGCACTAAGTGTGCGAGTTTGAT-TCTAT
1 AGCACTAAGTGTGCG-GATTGATATATAT
* *
49576141 AGCACTAAGTGTGC-GAGCTGAAAATATAT
1 AGCACTAAGTGTGCGGA-TTG-ATATATAT
49576170 AGCACTAAGTGTGCGGATT
1 AGCACTAAGTGTGCGGATT
49576189 CACTATATGC
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
26 1 0.03
27 2 0.05
28 15 0.38
29 19 0.49
30 2 0.05
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGGATTGATATATAT
Found at i:49581728 original size:37 final size:37
Alignment explanation
Indices: 49581628--49581730 Score: 154
Period size: 37 Copynumber: 2.8 Consensus size: 37
49581618 CGAATAGTCC
* * * *
49581628 CCACATGTAGTTATCGGATCTTACCCAGACAATATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAATATCT
49581665 CCACACGTAGTCATCGGGTCTTACCCGGAC-ATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAT-ATCT
49581702 CCACACGTAGTCATCGGGTCTTACCCGGA
1 CCACACGTAGTCATCGGGTCTTACCCGGA
49581731 ATATATTTCC
Statistics
Matches: 61, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
36 2 0.03
37 59 0.97
ACGTcount: A:0.25, C:0.31, G:0.18, T:0.25
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACAATATCT
Found at i:49581929 original size:48 final size:48
Alignment explanation
Indices: 49581871--49582151 Score: 517
Period size: 48 Copynumber: 5.9 Consensus size: 48
49581861 ATATACACAC
* *
49581871 ATCTCCTACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
49581919 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* * *
49581967 ATCTCATATATATTTCACATTAGCCATTCGACATTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
49582015 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
49582063 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
49582111 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACA
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACA
49582152 CACATATATA
Statistics
Matches: 225, Mismatches: 8, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
48 225 1.00
ACGTcount: A:0.31, C:0.28, G:0.06, T:0.35
Consensus pattern (48 bp):
ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
Found at i:49586061 original size:18 final size:19
Alignment explanation
Indices: 49586038--49586081 Score: 63
Period size: 18 Copynumber: 2.4 Consensus size: 19
49586028 AACTAAACTT
* *
49586038 ATTTATACATATTTAAT-A
1 ATTTATAAATATCTAATGA
49586056 ATTTATAAATATCTAATGA
1 ATTTATAAATATCTAATGA
49586075 ATTTATA
1 ATTTATA
49586082 TTGCCATGCA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 15 0.65
19 8 0.35
ACGTcount: A:0.45, C:0.05, G:0.02, T:0.48
Consensus pattern (19 bp):
ATTTATAAATATCTAATGA
Found at i:49588426 original size:15 final size:15
Alignment explanation
Indices: 49588406--49588436 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
49588396 ATATCTTAAC
*
49588406 TATATTATAATATGT
1 TATATTATAACATGT
49588421 TATATTATAACATGT
1 TATATTATAACATGT
49588436 T
1 T
49588437 TTTTTTAACC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.39, C:0.03, G:0.06, T:0.52
Consensus pattern (15 bp):
TATATTATAACATGT
Found at i:49589905 original size:48 final size:48
Alignment explanation
Indices: 49589845--49590164 Score: 247
Period size: 48 Copynumber: 6.7 Consensus size: 48
49589835 TATGTGTGCT
* *
49589845 AGTGTAAGACCATGTCTGGTACATGGCATCGGCCACAATATGAGAGCA
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCATAATATGAGAGCA
* * * * *
49589893 AGTGTGAGACCATGTTTGGAACATGGCATC-GCCA-ATGTAATGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCATA-AT-ATGAGAGCA
* * * * *
49589941 AGTGTAAGACCACGTCTGGGACATGGCATCGG-CATTGATATGTGCGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCA-TAATATGAGAGCA
* * * *
49589989 AGTGTAAGACCATGTTTGGGACATGGCATCGACCATATTAAGAGAGTCA
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCATAATATGAGAG-CA
* * * * ** * *
49590038 A-TGTAAAACCATGTCTGAGACATGGCATCGG-CATTGAGACAAGTGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCA-TAATATGAGAGCA
* * * * * * * *
49590085 AGTGTAAGACCATGTTTGGGACATAGCATTGGCCTTGACATGTGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCATAATATGAGAGCA
* *
49590133 AGTGTAAGACCATGT-TTGGAAATGGCATCGGC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGC
49590165 AATTCACCCT
Statistics
Matches: 214, Mismatches: 48, Indels: 21
0.76 0.17 0.07
Matches are distributed among these distances:
46 1 0.00
47 22 0.10
48 184 0.86
49 7 0.03
ACGTcount: A:0.29, C:0.18, G:0.28, T:0.25
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCCATAATATGAGAGCA
Found at i:49590006 original size:96 final size:96
Alignment explanation
Indices: 49589842--49590165 Score: 347
Period size: 96 Copynumber: 3.4 Consensus size: 96
49589832 TGATATGTGT
* ** * *
49589842 GCTAGTGTAAGACCATGTCTGGTACATGGCATCGGCCA-CAATATGAGAGCAAGTGTGAGACCAT
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGG-CATTGATATGAGAGCTAGTGTAAGACCAT
*
49589906 GTTTGGAACATGGCATCGCCAATGTAATGAGA
65 GTTTGGGACATGGCATCGCCAATGTAATGAGA
* * *
49589938 GCTAGTGTAAGACCACGTCTGGGACATGGCATCGGCATTGATATGTGCGCTAGTGTAAGACCATG
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGATATGAGAGCTAGTGTAAGACCATG
49590003 TTTGGGACATGGCATCGACCATAT-TAA-GAGA
66 TTTGGGACATGGCATCG-CCA-ATGTAATGAGA
* * * * ** *
49590034 G-TCAATGTAAAACCATGTCTGAGACATGGCATCGGCATTGAGACAAGTGCTAGTGTAAGACCAT
1 GCT-AGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGATATGAGAGCTAGTGTAAGACCAT
* * * *
49590098 GTTTGGGACATAGCATTGGCC-TTG-ACATGTGA
65 GTTTGGGACATGGCA-TCGCCAATGTA-ATGAGA
* *
49590130 GCTAGTGTAAGACCATGT-TTGGAAATGGCATCGGCA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCA
49590166 ATTCACCCTT
Statistics
Matches: 192, Mismatches: 27, Indels: 19
0.81 0.11 0.08
Matches are distributed among these distances:
94 2 0.01
95 19 0.10
96 160 0.83
97 9 0.05
98 2 0.01
ACGTcount: A:0.29, C:0.18, G:0.28, T:0.25
Consensus pattern (96 bp):
GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGATATGAGAGCTAGTGTAAGACCATG
TTTGGGACATGGCATCGCCAATGTAATGAGA
Found at i:49590092 original size:144 final size:144
Alignment explanation
Indices: 49589832--49590162 Score: 400
Period size: 144 Copynumber: 2.3 Consensus size: 144
49589822 GACATTTAGA
* * * * *
49589832 TGATATGTGTGCTAGTGTAAGACCATGTCTGGTACATGGCATCGGCCACAATATGAGAGCAAGTG
1 TGATATGTGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGACCACAATAAGAGAGCAAGTG
* * * **
49589897 TGAGACCATGTTTGGAACATGGCATCGCCAATGTAATGAGAGCTAGTGTAAGACCACGTCTGGGA
66 TAAAACCATGTCTGGAACATGGCATCGCCAATGTAACAAGAGCTAGTGTAAGACCACGTCTGGGA
*
49589962 CATGGCATCGGCAT
131 CATAGCATCGGCAT
* * *
49589976 TGATATGTGCGCTAGTGTAAGACCATGTTTGGGACATGGCATCGACCATATTAAGAGAGTCAA-T
1 TGATATGTGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGACCACAATAAGAGAG-CAAGT
* * * * *
49590040 GTAAAACCATGTCT-GAGACATGGCATCGGCATTG-AGACAAGTGCTAGTGTAAGACCATGTTTG
65 GTAAAACCATGTCTGGA-ACATGGCATCGCCAATGTA-ACAAGAGCTAGTGTAAGACCACGTCTG
* *
49590103 GGACATAGCATTGGCCT
128 GGACATAGCATCGGCAT
* *
49590120 TGACATGTGAGCTAGTGTAAGACCATGTTT-GGAAATGGCATCG
1 TGATATGTGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCG
49590163 GCAATTCACC
Statistics
Matches: 161, Mismatches: 23, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
143 15 0.09
144 143 0.89
145 3 0.02
ACGTcount: A:0.28, C:0.18, G:0.28, T:0.26
Consensus pattern (144 bp):
TGATATGTGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGACCACAATAAGAGAGCAAGTG
TAAAACCATGTCTGGAACATGGCATCGCCAATGTAACAAGAGCTAGTGTAAGACCACGTCTGGGA
CATAGCATCGGCAT
Found at i:49591867 original size:21 final size:22
Alignment explanation
Indices: 49591817--49591871 Score: 67
Period size: 22 Copynumber: 2.5 Consensus size: 22
49591807 TGCAAGGCTT
**
49591817 ACATGCCCGTGTGGTCCAAGGG
1 ACATGCCCGTGTGACCCAAGGG
* *
49591839 ACACGCCCGTGTGACCCTA-GG
1 ACATGCCCGTGTGACCCAAGGG
49591860 ACATGCCCGTGT
1 ACATGCCCGTGT
49591872 TGAAGACCAT
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
21 13 0.46
22 15 0.54
ACGTcount: A:0.18, C:0.33, G:0.31, T:0.18
Consensus pattern (22 bp):
ACATGCCCGTGTGACCCAAGGG
Found at i:49592051 original size:12 final size:12
Alignment explanation
Indices: 49592034--49592063 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
49592024 GCACACACGG
49592034 CCGTGTCTCTAC
1 CCGTGTCTCTAC
*
49592046 CCGTGTCTCTGC
1 CCGTGTCTCTAC
49592058 CCGTGT
1 CCGTGT
49592064 GCCCAATTCT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.03, C:0.40, G:0.23, T:0.33
Consensus pattern (12 bp):
CCGTGTCTCTAC
Found at i:49600214 original size:30 final size:30
Alignment explanation
Indices: 49600180--49600239 Score: 120
Period size: 30 Copynumber: 2.0 Consensus size: 30
49600170 GTTTTTATAA
49600180 TTGAACTGGTCAAACCATTTATCCACCAAT
1 TTGAACTGGTCAAACCATTTATCCACCAAT
49600210 TTGAACTGGTCAAACCATTTATCCACCAAT
1 TTGAACTGGTCAAACCATTTATCCACCAAT
49600240 CCATCCAGTT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.33, C:0.27, G:0.10, T:0.30
Consensus pattern (30 bp):
TTGAACTGGTCAAACCATTTATCCACCAAT
Found at i:49604268 original size:15 final size:14
Alignment explanation
Indices: 49604248--49604278 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 14
49604238 CCTACTTCCC
49604248 TTTTCTTTTTTTCTT
1 TTTTCTTTTTTT-TT
49604263 TTTTCTTTTTTTTT
1 TTTTCTTTTTTTTT
49604277 TT
1 TT
49604279 AAATTTATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.25
15 12 0.75
ACGTcount: A:0.00, C:0.10, G:0.00, T:0.90
Consensus pattern (14 bp):
TTTTCTTTTTTTTT
Found at i:49607900 original size:48 final size:47
Alignment explanation
Indices: 49607840--49608054 Score: 206
Period size: 46 Copynumber: 4.6 Consensus size: 47
49607830 AAGCTGACGC
*
49607840 CATGTCCCAGACAGGTCTTACACTAGCTTGTATATCATGAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTTG-ATATCATGAGGCCGATG
* * * *
49607888 CATGTCCTAGACATGTCTTACACTAGCTCTCG-TCTCA--ATGTCGATG
1 CATGTCCCAGACATGTCTTACACTAGCT-T-GATATCATGAGGCCGATG
* * **
49607934 CATGTCCCAGACATGTCTTACACTGGCTTAAATATTGTGAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTT-GATATCATGAGGCCGATG
* * ** *
49607982 CATGTCCCAGACATGTCTTACACTGGCTCTCAT-TC-TGTCGCTGATG
1 CATGTCCCAGACATGTCTTACACTAGCT-TGATATCATGAGGCCGATG
* *
49608028 CATGTCCCAAACATGTCTTACGCTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
49608055 ACACATATCA
Statistics
Matches: 139, Mismatches: 22, Indels: 14
0.79 0.13 0.08
Matches are distributed among these distances:
45 1 0.01
46 67 0.48
47 1 0.01
48 67 0.48
49 2 0.01
50 1 0.01
ACGTcount: A:0.23, C:0.27, G:0.20, T:0.30
Consensus pattern (47 bp):
CATGTCCCAGACATGTCTTACACTAGCTTGATATCATGAGGCCGATG
Found at i:49607945 original size:94 final size:93
Alignment explanation
Indices: 49607840--49608054 Score: 281
Period size: 94 Copynumber: 2.3 Consensus size: 93
49607830 AAGCTGACGC
* ** *
49607840 CATGTCCCAGACAGGTCTTACACTAGCTTGTATATCATGAGGCCGATGCATGTCCTAGACATGTC
1 CATGTCCCAGACATGTCTTACACTAGCTTAAATATCATGAGGCCGATGCATGTCCCAGACATGTC
*
49607905 TTACACTAGCTCTCGTCTCAATGT-C-GATG
66 TTACACTAGCTCTCAT-TC--TGTCCTGATG
* **
49607934 CATGTCCCAGACATGTCTTACACTGGCTTAAATATTGTGAGGCCGATGCATGTCCCAGACATGTC
1 CATGTCCCAGACATGTCTTACACTAGCTTAAATATCATGAGGCCGATGCATGTCCCAGACATGTC
*
49607999 TTACACTGGCTCTCATTCTGTCGCTGATG
66 TTACACTAGCTCTCATTCTGTC-CTGATG
* *
49608028 CATGTCCCAAACATGTCTTACGCTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
49608055 ACACATATCA
Statistics
Matches: 106, Mismatches: 12, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
91 3 0.03
93 3 0.03
94 100 0.94
ACGTcount: A:0.23, C:0.27, G:0.20, T:0.30
Consensus pattern (93 bp):
CATGTCCCAGACATGTCTTACACTAGCTTAAATATCATGAGGCCGATGCATGTCCCAGACATGTC
TTACACTAGCTCTCATTCTGTCCTGATG
Found at i:49615627 original size:46 final size:45
Alignment explanation
Indices: 49615566--49615781 Score: 227
Period size: 46 Copynumber: 4.7 Consensus size: 45
49615556 CGCGAGGCAA
49615566 ATGCATGTCCCAGACATGTCTTACACTAGCTCTTGTCTCAATGCCG
1 ATGCATGTCCCAGACATGTCTTACACTAGCTCTTGT-TCAATGCCG
* * * * *
49615612 ATGAATGTCCTAGACATGTCTTACACTAGCT-TAAATATTGCGAGGCCG
1 ATGCATGTCCCAGACATGTCTTACACTAGCTCT---TGTT-CAATGCCG
* *
49615660 ATGCATGTCCCAGACATGTCTTACACTAGCTCTCGTTTCAATACCG
1 ATGCATGTCCCAGACATGTCTTACACTAGCTCTTG-TTCAATGCCG
* * ** ** *
49615706 ATGCATGTACCAGACATGTCTTACACTGGCTCTCATTCTGTGGCTG
1 ATGCATGTCCCAGACATGTCTTACACTAGCTCTTGTTCAAT-GCCG
*
49615752 ATGCATGTCCCAGACATGTCTTACGCTAGC
1 ATGCATGTCCCAGACATGTCTTACACTAGC
49615782 ATACATATCA
Statistics
Matches: 141, Mismatches: 22, Indels: 14
0.80 0.12 0.08
Matches are distributed among these distances:
45 5 0.04
46 95 0.67
47 3 0.02
48 37 0.26
49 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.30
Consensus pattern (45 bp):
ATGCATGTCCCAGACATGTCTTACACTAGCTCTTGTTCAATGCCG
Found at i:49615707 original size:94 final size:92
Alignment explanation
Indices: 49615542--49615781 Score: 288
Period size: 94 Copynumber: 2.6 Consensus size: 92
49615532 TCTATAGGTG
* * *
49615542 ACTAGCTTGTATATCGCGAGGCAAATGCATGTCCCAGACATGTCTTACACTAGCTCTTGTCTCAA
1 ACTAGC-T-TATATTGCGAGGCAGATGCATGTCCCAGACATGTCTTACACTAGCTCTCGTCTCAA
*
49615607 TGCCGATGAATGT-CCTAGACATGTCTTAC
64 TACCGATGAATGTACC-AGACATGTCTTAC
* *
49615636 ACTAGCTTAAATATTGCGAGGCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCGTTTCAA
1 ACTAGCTT--ATATTGCGAGGCAGATGCATGTCCCAGACATGTCTTACACTAGCTCTCGTCTCAA
*
49615701 TACCGATGCATGTACCAGACATGTCTTAC
64 TACCGATGAATGTACCAGACATGTCTTAC
* * * * *
49615730 ACTGGCTCT-CATT-CTGTGGCTGATGCATGTCCCAGACATGTCTTACGCTAGC
1 ACTAGCT-TATATTGC-GAGGCAGATGCATGTCCCAGACATGTCTTACACTAGC
49615782 ATACATATCA
Statistics
Matches: 129, Mismatches: 12, Indels: 12
0.84 0.08 0.08
Matches are distributed among these distances:
91 1 0.01
92 38 0.29
93 1 0.01
94 86 0.67
95 3 0.02
ACGTcount: A:0.24, C:0.27, G:0.20, T:0.30
Consensus pattern (92 bp):
ACTAGCTTATATTGCGAGGCAGATGCATGTCCCAGACATGTCTTACACTAGCTCTCGTCTCAATA
CCGATGAATGTACCAGACATGTCTTAC
Found at i:49632098 original size:28 final size:28
Alignment explanation
Indices: 49632052--49632120 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
49632042 TTTAAAACCC
*
49632052 TAGGGGT-ATATCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
49632079 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
49632107 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
49632121 TGATCTACGC
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 7 0.17
28 33 0.82
ACGTcount: A:0.19, C:0.10, G:0.28, T:0.43
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTGCTCTT
Found at i:49633772 original size:20 final size:20
Alignment explanation
Indices: 49633749--49633786 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
49633739 CACATCCAAA
*
49633749 TACAAAATTTTAAAAATCTT
1 TACAAAATATTAAAAATCTT
*
49633769 TACAAAATATTGAAAATC
1 TACAAAATATTAAAAATC
49633787 GCGAATAAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.11, G:0.03, T:0.34
Consensus pattern (20 bp):
TACAAAATATTAAAAATCTT
Found at i:49640099 original size:28 final size:28
Alignment explanation
Indices: 49640053--49640121 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
49640043 TTTAAAACCC
*
49640053 TAGGGGT-ATATCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
49640080 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
49640108 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
49640122 TGATCTACGC
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 7 0.17
28 33 0.82
ACGTcount: A:0.19, C:0.10, G:0.28, T:0.43
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTGCTCTT
Found at i:49641892 original size:27 final size:25
Alignment explanation
Indices: 49641827--49641898 Score: 72
Period size: 27 Copynumber: 2.8 Consensus size: 25
49641817 TCTTGTACAT
* * *
49641827 GTATGCTCACACGAGCAGTGAATCG
1 GTATACTCACACGAGCTGTGAATAG
*
49641852 GTATGCTCACACGAGCTGTGAAAATAG
1 GTATACTCACACGAGCTGTG--AATAG
* *
49641879 GTCTACTCACACGAGATGTG
1 GTATACTCACACGAGCTGTG
49641899 GGTTGAAACG
Statistics
Matches: 40, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
25 19 0.47
27 21 0.52
ACGTcount: A:0.29, C:0.22, G:0.26, T:0.22
Consensus pattern (25 bp):
GTATACTCACACGAGCTGTGAATAG
Found at i:49643434 original size:83 final size:83
Alignment explanation
Indices: 49643286--49643462 Score: 311
Period size: 83 Copynumber: 2.1 Consensus size: 83
49643276 CCATAATTAT
49643286 TTCATACAT-ATTTAACTACATTGGTGGATACCCATATACCACAATTAATCTTATGCATGTTTAG
1 TTCATACATCATTTAACTACATTGGTGGATACCCATATACCACAATTAATCTTATGCATGTTTAG
49643350 CATTCACATTCAACAGAG
66 CATTCACATTCAACAGAG
*
49643368 TTCATGCATCATTTAACTACATTGGTGGATACCCATATACCACAATTAATCTTATGCATGTTTAG
1 TTCATACATCATTTAACTACATTGGTGGATACCCATATACCACAATTAATCTTATGCATGTTTAG
**
49643433 CATTCACATTCAGTAGAG
66 CATTCACATTCAACAGAG
*
49643451 TTCATTCATCAT
1 TTCATACATCAT
49643463 CATAGTATTC
Statistics
Matches: 90, Mismatches: 4, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
82 8 0.09
83 82 0.91
ACGTcount: A:0.32, C:0.21, G:0.11, T:0.36
Consensus pattern (83 bp):
TTCATACATCATTTAACTACATTGGTGGATACCCATATACCACAATTAATCTTATGCATGTTTAG
CATTCACATTCAACAGAG
Found at i:49645353 original size:11 final size:11
Alignment explanation
Indices: 49645337--49645379 Score: 50
Period size: 11 Copynumber: 3.7 Consensus size: 11
49645327 TGGGTAAAAT
*
49645337 TATTTTAATAA
1 TATTTTATTAA
49645348 TATTTTATTAAGA
1 TATTTTATT-A-A
*
49645361 TGTTTTATTAA
1 TATTTTATTAA
49645372 TATTTTAT
1 TATTTTAT
49645380 GTATTTTAAG
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
11 16 0.59
12 2 0.07
13 9 0.33
ACGTcount: A:0.35, C:0.00, G:0.05, T:0.60
Consensus pattern (11 bp):
TATTTTATTAA
Found at i:49648293 original size:27 final size:27
Alignment explanation
Indices: 49648261--49648414 Score: 195
Period size: 27 Copynumber: 5.7 Consensus size: 27
49648251 TTACCCTACA
*
49648261 GGGGTATTTCGGTAATTTTACAAATCA
1 GGGGTATTTCGGTAATTTTACAAATCG
* * *
49648288 GAGGTATTTTGGTAATTTTACAAATTG
1 GGGGTATTTCGGTAATTTTACAAATCG
* *
49648315 GGGCTATTTCAGTAATTTTACAAA-CTG
1 GGGGTATTTCGGTAATTTTACAAATC-G
* *
49648342 AGGGTATTTCGATAATTTTACAAA-CTG
1 GGGGTATTTCGGTAATTTTACAAATC-G
49648369 GGGGTATTTCGGTAATTTTACAAATCG
1 GGGGTATTTCGGTAATTTTACAAATCG
*
49648396 GGGGTATTTCGATAATTTT
1 GGGGTATTTCGGTAATTTT
49648415 TACCTATTTT
Statistics
Matches: 109, Mismatches: 16, Indels: 4
0.84 0.12 0.03
Matches are distributed among these distances:
27 108 0.99
28 1 0.01
ACGTcount: A:0.29, C:0.10, G:0.22, T:0.40
Consensus pattern (27 bp):
GGGGTATTTCGGTAATTTTACAAATCG
Found at i:49648358 original size:81 final size:81
Alignment explanation
Indices: 49648262--49648414 Score: 220
Period size: 81 Copynumber: 1.9 Consensus size: 81
49648252 TACCCTACAG
* * *
49648262 GGGTATTTCGGTAATTTTACAAA-TCAGAGGTATTTTGGTAATTTTACAAATTGGGGCTATTTC-
1 GGGTATTTCGATAATTTTACAAACT-AGAGGTATTTCGGTAATTTTACAAATCGGGGCTATTTCG
49648325 AGTAATTTTACAAACTGA
65 A-TAATTTTACAAACTGA
* * *
49648343 GGGTATTTCGATAATTTTACAAACTGGGGGTATTTCGGTAATTTTACAAATCGGGGGTATTTCGA
1 GGGTATTTCGATAATTTTACAAACTAGAGGTATTTCGGTAATTTTACAAATCGGGGCTATTTCGA
49648408 TAATTTT
66 TAATTTT
49648415 TACCTATTTT
Statistics
Matches: 64, Mismatches: 6, Indels: 4
0.86 0.08 0.05
Matches are distributed among these distances:
81 62 0.97
82 2 0.03
ACGTcount: A:0.29, C:0.10, G:0.22, T:0.40
Consensus pattern (81 bp):
GGGTATTTCGATAATTTTACAAACTAGAGGTATTTCGGTAATTTTACAAATCGGGGCTATTTCGA
TAATTTTACAAACTGA
Found at i:49656021 original size:29 final size:27
Alignment explanation
Indices: 49655967--49656023 Score: 69
Period size: 29 Copynumber: 2.0 Consensus size: 27
49655957 ACTATGAATG
* * *
49655967 TGATTTGGGCCTAATGGGTCATATGAA
1 TGATTTGGGCCTAAGGGGCCAAATGAA
49655994 TGATATTGGGCCTAAAGGGGCCAAATGAA
1 TGAT-TTGGGCCT-AAGGGGCCAAATGAA
49656023 T
1 T
49656024 AAGTATGGAT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
27 4 0.16
28 8 0.32
29 13 0.52
ACGTcount: A:0.30, C:0.12, G:0.30, T:0.28
Consensus pattern (27 bp):
TGATTTGGGCCTAAGGGGCCAAATGAA
Found at i:49660447 original size:40 final size:40
Alignment explanation
Indices: 49660373--49660526 Score: 166
Period size: 40 Copynumber: 3.9 Consensus size: 40
49660363 CCGCACCAAG
* * * * * *
49660373 GCCTACGGGACTTAACCCGGATATCACGATTTGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
* *
49660413 GCCTTCGGGTCTTAGCCCGGATTTAACAACTTGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
** * *
49660453 GCCTTCGGGTCTTAGCCCGGATATAATTACTAGCATAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
* *
49660493 GTCC-TCGGGACTTAGCCCGGATATAACAATTTGC
1 G-CCTTCGGGTCTTAGCCCGGATATAACAACTTGC
49660527 TCATGCACAC
Statistics
Matches: 94, Mismatches: 19, Indels: 2
0.82 0.17 0.02
Matches are distributed among these distances:
40 92 0.98
41 2 0.02
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.27
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
Found at i:49660472 original size:80 final size:80
Alignment explanation
Indices: 49660373--49660526 Score: 184
Period size: 80 Copynumber: 1.9 Consensus size: 80
49660363 CCGCACCAAG
* * * * *
49660373 GCCTACGGGACTTAACCCGGATATCACGATTTGCACAAATG-CCTTCGGGTCTTAGCCCGGATTT
1 GCCTACGGGACTTAACCCGGATATAACGACTAGCACAAATGTCC-TCGGGACTTAGCCCGGATAT
49660437 AACAACTTGCACGAAT
65 AACAACTTGCACGAAT
* * * ** *
49660453 GCCTTCGGGTCTTAGCCCGGATATAATTACTAGCATAAATGTCCTCGGGACTTAGCCCGGATATA
1 GCCTACGGGACTTAACCCGGATATAACGACTAGCACAAATGTCCTCGGGACTTAGCCCGGATATA
*
49660518 ACAATTTGC
66 ACAACTTGC
49660527 TCATGCACAC
Statistics
Matches: 61, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
80 59 0.97
81 2 0.03
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.27
Consensus pattern (80 bp):
GCCTACGGGACTTAACCCGGATATAACGACTAGCACAAATGTCCTCGGGACTTAGCCCGGATATA
ACAACTTGCACGAAT
Found at i:49666363 original size:39 final size:39
Alignment explanation
Indices: 49666268--49666450 Score: 145
Period size: 39 Copynumber: 4.6 Consensus size: 39
49666258 TGCTGGAAAT
* * * * **
49666268 TATAACCGGGTTAAGACCCGAAGGCAATGGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTCAC
*
49666308 TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTCAT
1 TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTCAC
* * *
49666347 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-AATC-G
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGCGAGTCAC
* * * * * *
49666385 TGATATCCGGGTTAAGTCCCGTAGGCCTTGGTGCGGGTTAC
1 T-ATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTCAC
* * *
49666426 CATATCCGGGCTATGTCCCGAAGGC
1 TATATCCGGGCTAAGACCCGAAGGC
49666451 GTTTGAACGA
Statistics
Matches: 115, Mismatches: 23, Indels: 10
0.78 0.16 0.07
Matches are distributed among these distances:
38 3 0.03
39 61 0.53
40 51 0.44
ACGTcount: A:0.22, C:0.24, G:0.30, T:0.23
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTCAC
Found at i:49666419 original size:79 final size:79
Alignment explanation
Indices: 49666273--49666455 Score: 183
Period size: 79 Copynumber: 2.3 Consensus size: 79
49666263 GAAATTATAA
* * * * *
49666273 CCGGGTTAAGACCCGAAGGCAATGGTGCTAGTGGCTATATCCGGGCTAAGACCCGAAGGCATTGT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAATCGCTATATCCGGGCTAAGACCCGAAGGCATTGT
*
49666338 GCGAGTCATTC-TAT
66 GCGAGTCA-CCATAT
* * * *
49666352 CCGGGCTAAGACCCGAAGGCATTTGTGC-AATCG-TGATATCCGGGTTAAGTCCCGTAGGCCTTG
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAATCGCT-ATATCCGGGCTAAGACCCGAAGGCATT-
* *
49666415 GTGCGGGTTACCATAT
64 GTGCGAGTCACCATAT
* * *
49666431 CCGGGCTATGTCCCGAAGGCGTTTG
1 CCGGGCTAAGACCCGAAGGCATTTG
49666456 AACGAGTAGC
Statistics
Matches: 86, Mismatches: 15, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
77 1 0.01
78 27 0.31
79 58 0.67
ACGTcount: A:0.21, C:0.24, G:0.31, T:0.24
Consensus pattern (79 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCTAATCGCTATATCCGGGCTAAGACCCGAAGGCATTGT
GCGAGTCACCATAT
Found at i:49671047 original size:40 final size:40
Alignment explanation
Indices: 49670973--49671126 Score: 166
Period size: 40 Copynumber: 3.9 Consensus size: 40
49670963 CCGCACCAAG
* * * * * *
49670973 GCCTACGGGACTTAACCCGGATATCACGATTTGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
* *
49671013 GCCTTCGGGTCTTAGCCCGGATTTAACAACTTGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
** * *
49671053 GCCTTCGGGTCTTAGCCCGGATATAATTACTAGCATAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
* *
49671093 GTCC-TCGGGACTTAGCCCGGATATAACAATTTGC
1 G-CCTTCGGGTCTTAGCCCGGATATAACAACTTGC
49671127 TCATGCACAC
Statistics
Matches: 94, Mismatches: 19, Indels: 2
0.82 0.17 0.02
Matches are distributed among these distances:
40 92 0.98
41 2 0.02
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.27
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
Found at i:49671072 original size:80 final size:80
Alignment explanation
Indices: 49670973--49671126 Score: 184
Period size: 80 Copynumber: 1.9 Consensus size: 80
49670963 CCGCACCAAG
* * * * *
49670973 GCCTACGGGACTTAACCCGGATATCACGATTTGCACAAATG-CCTTCGGGTCTTAGCCCGGATTT
1 GCCTACGGGACTTAACCCGGATATAACGACTAGCACAAATGTCC-TCGGGACTTAGCCCGGATAT
49671037 AACAACTTGCACGAAT
65 AACAACTTGCACGAAT
* * * ** *
49671053 GCCTTCGGGTCTTAGCCCGGATATAATTACTAGCATAAATGTCCTCGGGACTTAGCCCGGATATA
1 GCCTACGGGACTTAACCCGGATATAACGACTAGCACAAATGTCCTCGGGACTTAGCCCGGATATA
*
49671118 ACAATTTGC
66 ACAACTTGC
49671127 TCATGCACAC
Statistics
Matches: 61, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
80 59 0.97
81 2 0.03
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.27
Consensus pattern (80 bp):
GCCTACGGGACTTAACCCGGATATAACGACTAGCACAAATGTCCTCGGGACTTAGCCCGGATATA
ACAACTTGCACGAAT
Found at i:49673737 original size:26 final size:25
Alignment explanation
Indices: 49673708--49673764 Score: 80
Period size: 26 Copynumber: 2.2 Consensus size: 25
49673698 TCTCATCCCT
49673708 ATTTTACCCTCATA-AAAATTTTGATG
1 ATTTTACCC-C-TAGAAAATTTTGATG
49673734 ATTTTACCCCTAGTAAAATTTTGATG
1 ATTTTACCCCTAG-AAAATTTTGATG
49673760 ATTTT
1 ATTTT
49673765 TCCTTCGGTA
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
24 2 0.07
25 1 0.03
26 26 0.90
ACGTcount: A:0.32, C:0.14, G:0.09, T:0.46
Consensus pattern (25 bp):
ATTTTACCCCTAGAAAATTTTGATG
Found at i:49679145 original size:632 final size:633
Alignment explanation
Indices: 49675967--49686351 Score: 16590
Period size: 633 Copynumber: 16.4 Consensus size: 633
49675957 TCATAGCTCC
* *
49675967 TTTCTAGAGTTTGGAATCAACACTCTACATCGCTTCGTCATATATGAGTAAGGCATCATCTTCCT
1 TTTCTAGAGCTTGGAATCAACACTCTACATCGCTTCGTCATATGTGAGTAAGGCATCATCTTCCT
* * *
49676032 GTTCAGCAAACTCAGCGTTAAAAACACTTCTGCTAGATTGGAAGAACTCCAGCCTATGTGAGTCC
66 GTTCAGCAGACTCAGTGTTAAAAACACTTCTGCTAGATTGGAAGAACTCCAGCCTATGTGAGTCT
*
49676097 AACTTTCTTGCATCTTTATCCAATACGTGGGTCGGACATCCCAAAATCCTAAAATGTATAAGATT
131 GACTTTCTTGCATCTTTATCCAATACGTGGGTCGGACATCCCAAAATCCTAAAATGTATAAGATT
* * * * *
49676162 CAACATCCTACCATGCCGCAATTTGTATGGAGTTTTCGATTCTACCTTATTTGGTACATCATTCA
196 CAACTTCCTACCATGCCACAATTTGTATAGAGTTTTCGATTCTGCCTTATTTGGCACATCATTCA
**
49676227 GAATATAACAAGTCGTTTGTACAACGTATCCTGAAAAAGAGGTTGACAACTTCAAATAACTTAAT
261 GAATATAACAAGTCGTTTGTACAACGTATCCCCAAAAAGAGGTTGACAACTTCAAATAACTTAAT
* * * *
49676292 ATCGAATATACAATGTCTAACAATGTTCAATTTCTTCTCTCTGCTATGCCATTCCGTTGTGGAGT
326 ATCGAATATACCATGTCTAACAATGTTCGATTTCTTCTCTCTGCTGTGCCATTCTGTTGTGGAGT
* *
49676357 GCCCGACACGGTT-ATTGGGATAGAATCTCATTCTCTGTGAGGTGCCTTCAGAACTCATCAGATA
391 GCCCGACACGGTTAATTGGGATAGAATCTCATTCTCTATGAGGTGCCTTAAGAACTCATCAGATA
*
49676421 AATATGCCCCATCTCGACCAGACCGAAGTGCCTTTATGGGTAAACGTAGTTGTTTCTACACTTCC
456 AATATGCCCCACCTCGACCAGACCGAAGTGCCTTTATGGGTAAACGTAGTTGTTTCTACACTTCC
49676486 ACACGAAACTTTTTGAATTTATCAAAAGTTTCACTCTTGCGATGCATCAGGTATACATGTCCATA
521 ACACGAAACTTTTTGAATTTATCAAAAGTTTCACTCTTGCGATGCATCAGGTATACATGTCCATA
*
49676551 TTTGGAATAGTCATTGATAAAGGTCACATAATACTCGTAACCACCTCT
586 TTTGGAATAGTCATTGATAAAGGTTACATAATACTCGTAACCACCTCT
49676599 TTTCTAGAGCTTGGAATCAACACTCTACATCGCTTCGTCATATGTGAGTAAGGCATCATCTTCCT
1 TTTCTAGAGCTTGGAATCAACACTCTACATCGCTTCGTCATATGTGAGTAAGGCATCATCTTCCT
* * * *
49676664 GTTCAGTAGACTTAGTGTTAAAAACACTTCTGCTAGATTGGAAGAACTCTAGCCTATATGAGTCT
66 GTTCAGCAGACTCAGTGTTAAAAACACTTCTGCTAGATTGGAAGAACTCCAGCCTATGTGAGTCT
49676729 GACTTTCTTG-ATCTTTATCCAATACGTGGGTCGGACATCCCAAAATCCTAAAATGTATAAGATT
131 GACTTTCTTGCATCTTTATCCAATACGTGGGTCGGACATCCCAAAATCCTAAAATGTATAAGATT
49676793 CAACTTCCTACCATGCCACAATTTGTATAGAGTTTTCGATTCTGCCTTATTTGGCACATCATTCA
196 CAACTTCCTACCATGCCACAATTTGTATAGAGTTTTCGATTCTGCCTTATTTGGCACATCATTCA
49676858 GAATATAACAAGTCGTTTGTACAACGTATCCCCAAAAAGAGGTTGACAACTTCAAATAACTTAAT
261 GAATATAACAAGTCGTTTGTACAACGTATCCCCAAAAAGAGGTTGACAACTTCAAATAACTTAAT
* *
49676923 ATCGAATATACCATGTCTAACAATGTTCAATTTCTTCTCTCTGCTGTGCCATTCTGTTGTGGAGC
326 ATCGAATATACCATGTCTAACAATGTTCGATTTCTTCTCTCTGCTGTGCCATTCTGTTGTGGAGT
* *
49676988 GCTCGAAACGGTTAATTGGGATAGAATCTCATTCTCTATGAGGTGCCTTAAGAACTCATCAGATA
391 GCCCGACACGGTTAATTGGGATAGAATCTCATTCTCTATGAGGTGCCTTAAGAACTCATCAGATA
* *
49677053 AATATGCCCCACCTCGACCAGACCGAAGTGCCTTTACGGGTAAA-GTAGTTGTTTCTACATTTCC
456 AATATGCCCCACCTCGACCAGACCGAAGTGCCTTTATGGGTAAACGTAGTTGTTTCTACACTTCC
* * * * *
49677117 ACACAAAACTTTTTGAATTTATCAAAAGTTTCACACTTGCAATGCATTAAGTATACATG-CCTAT
521 ACACGAAACTTTTTGAATTTATCAAAAGTTTCACTCTTGCGATGCATCAGGTATACATGTCC-AT
*
49677181 ATTTGGAATAGTCATTGATAAAAGTTACATAATACTCGTAACCACCTCT
585 ATTTGGAATAGTCATTGATAAAGGTTACATAATACTCGTAACCACCTCT
* *
49677230 TTTCTAGAGCTTGGAATCAACACTCTACATCACTTCGTCATATGTGAGTAAGGCATCATCTTCTT
1 TTTCTAGAGCTTGGAATCAACACTCTACATCGCTTCGTCATATGTGAGTAAGGCATCATCTTCCT
* * * *
49677295 GTTCAGCAGACTCAGTGTTAAAAACACTTCTACTAGATTGGAAGAACTCCA-ACTATGTGACTCC
66 GTTCAGCAGACTCAGTGTTAAAAACACTTCTGCTAGATTGGAAGAACTCCAGCCTATGTGAGTCT
* * *
49677359 GACTTTTTTGCATCTTTATCCAATACGTGGGTCGGACATTCCAAAATCCAAAAATGTATAAGATT
131 GACTTTCTTGCATCTTTATCCAATACGTGGGTCGGACATCCCAAAATCCTAAAATGTATAAGATT
* *
49677424 CAACTTCCTACCATGCCACAATTTGTATAGAGTTTTCGATTCTACCTTATTTGGCACAACATTCA
196 CAACTTCCTACCATGCCACAATTTGTATAGAGTTTTCGATTCTGCCTTATTTGGCACATCATTCA
* **
49677489 GAATATAACAAGTCATTTGTACAACGTATCCCCAAAAAGAATTTGACAACTTCAAATAACTTAAT
261 GAATATAACAAGTCGTTTGTACAACGTATCCCCAAAAAGAGGTTGACAACTTCAAATAACTTAAT
* * * *
49677554 ATCGAATATACCATGTCTAGCAATGTTCGATTTCTTCTCCCTACTGCGCCATTCTGTTGTGGAGT
326 ATCGAATATACCATGTCTAACAATGTTCGATTTCTTCTCTCTGCTGTGCCATTCTGTTGTGGAGT
* *
49677619 GCCCGACACGGCTAATTGGGATAGAATATCATTCTCTATGAGGTGCCTTAAGAACTCATCAGATA
391 GCCCGACACGGTTAATTGGGATAGAATCTCATTCTCTATGAGGTGCCTTAAGAACTCATCAGATA
* *
49677684 AATATGCCCCACCTCGACCGGACCGAAGTGCCTTTATGGGTAAACGTAGTTATTTCTACACTTCC
456 AATATGCCCCACCTCGACCAGACCGAAGTGCCTTTATGGGTAAACGTAGTTGTTTCTACACTTCC
* * *
49677749 ACACGAAACTTTTTGAATTTATCAAAAGTTTCACTCTTGCGATACATCAGGTATACACGTCTATA
521 ACACGAAACTTTTTGAATTTATCAAAAGTTTCACTCTTGCGATGCATCAGGTATACATGTCCATA
* * *
49677814 TTCGGAATAGTCATTGATAAGGGTTACATAATACTCGTAACCACCTTT
586 TTTGGAATAGTCATTGATAAAGGTTACATAATACTCGTAACCACCTCT
* *
49677862 TTTCTAGAGCTTGGAATTAACACTCTACATCGCTTCGTCATATGTGAGCAAGGCATCATCTTCCT
1 TTTCTAGAGCTTGGAATCAACACTCTACATCGCTTCGTCATATGTGAGTAAGGCATCATCTTCCT
*** * *
49677927 GTTCAGCAGACTCAGTGTTAAAAACACTTCTGCTAGATTGGAAGAACTCTTCCCCATGTGAGTCC
66 GTTCAGCAGACTCAGTGTTAAAAACACTTCTGCTAGATTGGAAGAACTCCAGCCTATGTGAGTCT
* *
49677992 GAATTTCTTGCATCTTTATCCAATACGTGGGTCGGACATCCCAAAATCCTAGAATGTATAAGATT
131 GACTTTCTTGCATCTTTATCCAATACGTGGGTCGGACATCCCAAAATCCTAAAATGTATAAGATT
* * * * *
49678057 CAACTTCCTACCATCCCACAATTTGTATAGAGTTTTCGATTCTACCTTGTTTTGCACAACATTCA
196 CAACTTCCTACCATGCCACAATTTGTATAGAGTTTTCGATTCTGCCTTATTTGGCACATCATTCA
* *
49678122 GAATATAACAAGTCGTTTGTACAACGTATCCCCAAAAAGAGGTTGACAACTTCGAATAACATAAT
261 GAATATAACAAGTCGTTTGTACAACGTATCCCCAAAAAGAGGTTGACAACTTCAAATAACTTAAT
* * * *
49678187 ATCGAATATACCTTGTCTAACAATGATCGATTTCTTCTCTCTGCTGTGCCATTCTATTTTGGAGT
326 ATCGAATATACCATGTCTAACAATGTTCGATTTCTTCTCTCTGCTGTGCCATTCTGTTGTGGAGT
49678252 GCCCGACACGGTTAATTGGGATAGAATCTCATTCTCTATGAGGTGCCTTAAGAACTCATCAGATA
391 GCCCGACACGGTTAATTGGGATAGAATCTCATTCTCTATGAGGTGCCTTAAGAACTCATCAGATA
*
49678317 AATATGCCCCACCTCGACCAGACCGAAGTGCCTTTATGGGTAAACGTAGCTGTTTCTACACTTCC
456 AATATGCCCCACCTCGACCAGACCGAAGTGCCTTTATGGGTAAACGTAGTTGTTTCTACACTTCC
* *
49678382 ACACGAAACTTTTTGAATTTATCAAAAGTTTCACTCTTGCGATGTATCAAGTATACATGTCCATA
521 ACACGAAACTTTTTGAATTTATCAAAAGTTTCACTCTTGCGATGCATCAGGTATACATGTCCATA
*
49678447 TTTGGAATACTCATTGATAAAGGTTACATAATACTCGTAACCACCTCT
586 TTTGGAATAGTCATTGATAAAGGTTACATAATACTCGTAACCACCTCT
* *
49678495 TTTCTAGAGCTTGGAATCAACACTCTACATCGCTTCGTCATATGTGAGTGAGGCATCATCTTCAT
1 TTTCTAGAGCTTGGAATCAACACTCTACATCGCTTCGTCATATGTGAGTAAGGCATCATCTTCCT
* * * * *
49678560 ATTCAGCAGACTCAATGTTAAAAACACTTTTGTTAGATTGGAAGAACTCTAGCCTATGTGAGTCT
66 GTTCAGCAGACTCAGTGTTAAAAACACTTCTGCTAGATTGGAAGAACTCCAGCCTATGTGAGTCT
*
49678625 GACTTTCTTGCATCTTTATCCAATACGTGTGTCGGACATCCCAAAATCCTAAAATGTATAAGATT
131 GACTTTCTTGCATCTTTATCCAATACGTGGGTCGGACATCCCAAAATCCTAAAATGTATAAGATT
** *
49678690 CAACTTCCTACCATGCTGCAATTTGTATAGAGTTTTCGATTCTGCCTTATTTGGTACATCATTCA
196 CAACTTCCTACCATGCCACAATTTGTATAGAGTTTTCGATTCTGCCTTATTTGGCACATCATTCA
* *
49678755 AAATATAATAAGTCGTTTGTACAACGTATCCCCAAAAAGAGGTTGACAACTTCAAATAACTTAAT
261 GAATATAACAAGTCGTTTGTACAACGTATCCCCAAAAAGAGGTTGACAACTTCAAATAACTTAAT
* *
49678820 ATCGAATATACCATG-CTAACAATGATCGATTTCTTCTCTCTACTGTGCCATTCTGTTGTGGAGT
326 ATCGAATATACCATGTCTAACAATGTTCGATTTCTTCTCTCTGCTGTGCCATTCTGTTGTGGAGT
* * *
49678884 GCCTGACATGGTTAATTGGGATAGAATCTCATTCTCTATGAGGTGCCTTGAGAACTCATCAGATA
391 GCCCGACACGGTTAATTGGGATAGAATCTCATTCTCTATGAGGTGCCTTAAGAACTCATCAGATA
*
49678949 AATATGCCCCACCTCGACCAGACCGAAGTGCCTTTATGGGTAAACGTAGTTGTTTATACACTTCC
456 AATATGCCCCACCTCGACCAGACCGAAGTGCCTTTATGGGTAAACGTAGTTGTTTCTACACTTCC
49679014 ACACGAAACTTTTTGAATTTATCAAAAGTTTCACTCTTGCGATGCATCAGGTATACATGTCCATA
521 ACACGAAACTTTTTGAATTTATCAAAAGTTTCACTCTTGCGATGCATCAGGTATACATGTCCATA
49679079 TTTGGAATAGTCATTGATAAAGGTTACATAATACTCGTAACCACCTCT
586 TTTGGAATAGTCATTGATAAAGGTTACATAATACTCGTAACCACCTCT
* * * *** * * *
49679127 TGTCTAGAGCTGGGAATCAACTA-TCTACTTAATTTCGTTATATGTGAGTGAGGAATCATCTTCC
1 TTTCTAGAGCTTGGAATCAAC-ACTCTACATCGCTTCGTCATATGTGAGTAAGGCATCATCTTCC
49679191 TGTTCAGCAGACTCAGTGTTAAAAACACTTCTGCTAGATTGGAAGAACTCCAGCCTATGTGAGTC
65 TGTTCAGCAGACTCAGTGTTAAAAACACTTCTGCTAGATTGGAAGAACTCCAGCCTATGTGAGTC
* *
49679256 TGACTTTGTTGCATCTTTATCCAATACGTGGGTCGAACATCCCAAAATCCTAAAATGTATAAGAT
130 TGACTTTCTTGCATCTTTATCCAATACGTGGGTCGGACATCCCAAAATCCTAAAATGTATAAGAT
* *
49679321 TCAACTTCCTACCATTCCACAATTTGTATAGAGTTTTCGATTCTGCCTAATTTGGCACATCATTC
195 TCAACTTCCTACCATGCCACAATTTGTATAGAGTTTTCGATTCTGCCTTATTTGGCACATCATTC
* * *
49679386 AGAACATAACAAGTCGTTTTTACAACATATCCCCAAAAAGAGGTTGACAACTTCAAATAACTTAA
260 AGAATATAACAAGTCGTTTGTACAACGTATCCCCAAAAAGAGGTTGACAACTTCAAATAACTTAA
* *
49679451 TATCGAATATACCATGTCTAACAATGTTCGATTTCTTCTCTCTGCTGTGCCATTCTGCTGTGGAC
325 TATCGAATATACCATGTCTAACAATGTTCGATTTCTTCTCTCTGCTGTGCCATTCTGTTGTGGAG
* *
49679516 TGCCCGACACGGTTAATTGGGATAGAATCTCATTATCTATGAGGTGACTTAAGAACTCATCAGAT
390 TGCCCGACACGGTTAATTGGGATAGAATCTCATTCTCTATGAGGTGCCTTAAGAACTCATCAGAT
* *
49679581 AAATATGCCCCACCTCGACCAGACCGTAGTGCCTTTATGGGTAAACGTAGTTGTTTCTACTCTTC
455 AAATATGCCCCACCTCGACCAGACCGAAGTGCCTTTATGGGTAAACGTAGTTGTTTCTACACTTC
* * * *
49679646 CACACGAAACTTTTTCAATTTATCAAAAGTTTCACACTTGCGATGCATTAAGTATACATGTCCAT
520 CACACGAAACTTTTTGAATTTATCAAAAGTTTCACTCTTGCGATGCATCAGGTATACATGTCCAT
*
49679711 ATTTGGAATAGTCATTGATAAAGGTTACATAATACTAGTAACCACCTCT
585 ATTTGGAATAGTCATTGATAAAGGTTACATAATACTCGTAACCACCTCT
49679760 TTTCTAGAGCTTGGAATCAACACTCTACATCGCTTCGTCATATGTGAGTAAGGCATCATCTTCCT
1 TTTCTAGAGCTTGGAATCAACACTCTACATCGCTTCGTCATATGTGAGTAAGGCATCATCTTCCT
* ** * *
49679825 GGTCATTAGACTTAGTGTTAAAAGCACTTCTGCTAGATTGGAAGAACTCCAGCCTATGTGAGTCT
66 GTTCAGCAGACTCAGTGTTAAAAACACTTCTGCTAGATTGGAAGAACTCCAGCCTATGTGAGTCT
*
49679890 GACTTTCTTGCATCTTTATCCAATACGTGGGTTGGACATCCCAAAATCCTAAAATGTATAAGATT
131 GACTTTCTTGCATCTTTATCCAATACGTGGGTCGGACATCCCAAAATCCTAAAATGTATAAGATT
* * * * * *
49679955 CAACTTCCGACCATGTCGCAATTTGTATAGAGTTTTCAATTCTGCCTTATTTGGCACAACATTTA
196 CAACTTCCTACCATGCCACAATTTGTATAGAGTTTTCGATTCTGCCTTATTTGGCACATCATTCA
* * * **
49680020 AAATATAACAAGTCATTTTTACAACGTATCCCCAAAAAGAATTTGACAACTTCAAATAACTTAAT
261 GAATATAACAAGTCGTTTGTACAACGTATCCCCAAAAAGAGGTTGACAACTTCAAATAACTTAAT
* *
49680085 ATCGAATATACCATGTCTAGCAATGTTCGATTTCTTCTCTCTGCTGTGCCATTCTATTGTGGAGT
326 ATCGAATATACCATGTCTAACAATGTTCGATTTCTTCTCTCTGCTGTGCCATTCTGTTGTGGAGT
* *
49680150 GCCCAACACGGTTAATTGGGATAGAATCTCATTCTCTATGAGGTGCCTTAACAACTCATCAGATA
391 GCCCGACACGGTTAATTGGGATAGAATCTCATTCTCTATGAGGTGCCTTAAGAACTCATCAGATA
* * ** *
49680215 AATATGTCCCACCTCGACCAGACCGAAGTGCCTTTTTGGGTAAATATAGTTATTTCTACACTTCC
456 AATATGCCCCACCTCGACCAGACCGAAGTGCCTTTATGGGTAAACGTAGTTGTTTCTACACTTCC
*
49680280 ACATGAAACTTTTTGAATTTATCAAAAGTTTCACTCTTGCGATGCATCAGGTATACATGTCCATA
521 ACACGAAACTTTTTGAATTTATCAAAAGTTTCACTCTTGCGATGCATCAGGTATACATGTCCATA
*
49680345 TTTGGAATAGTCATTGATAAAGGTTACATAATACTCATAACCACCTCT
586 TTTGGAATAGTCATTGATAAAGGTTACATAATACTCGTAACCACCTCT
* *
49680393 TTTCTAGAGCTTGGAATCAACACTCTACATCGCTTCGTCAAATGTGAGTAAGGTATCATCTTCCT
1 TTTCTAGAGCTTGGAATCAACACTCTACATCGCTTCGTCATATGTGAGTAAGGCATCATCTTCCT
* * ** * * * **
49680458 ATTCAGTAGACTCAGTGTTAAAAACAAGTCTGCTAGATTGGAGGAAGTACAGTTTATGTGAGTCT
66 GTTCAGCAGACTCAGTGTTAAAAACACTTCTGCTAGATTGGAAGAACTCCAGCCTATGTGAGTCT
*
49680523 GACTTTCTTGCATCTTTATCCAATACGTGGGTCGGAAATCCCAAAATCCTAAAATGTATAAGATT
131 GACTTTCTTGCATCTTTATCCAATACGTGGGTCGGACATCCCAAAATCCTAAAATGTATAAGATT
* * * *
49680588 CAACTTCCTACCATGCCACAATTTGTATAGAGTTTTTGATTCTGCCTTATTTTGCATAACATTCA
196 CAACTTCCTACCATGCCACAATTTGTATAGAGTTTTCGATTCTGCCTTATTTGGCACATCATTCA
49680653 GAATATAACAAGAT-GTTTGTACAACGTATCCCCAAAAAGAGGTTGACAACTTCAAATAACTTAA
261 GAATATAACAAG-TCGTTTGTACAACGTATCCCCAAAAAGAGGTTGACAACTTCAAATAACTTAA
* * * *
49680717 TATCGAATATACCATGTCTAACAATATTCGATTTCTTCTCCCTGCTGTGCCATTTTGTTGTGGAC
325 TATCGAATATACCATGTCTAACAATGTTCGATTTCTTCTCTCTGCTGTGCCATTCTGTTGTGGAG
* * *
49680782 TGCCCGACACGGTTAATTGGGATAGAATCTCCTTCTCTATCAGGTGCCTTAAGAACTCATCCGAT
390 TGCCCGACACGGTTAATTGGGATAGAATCTCATTCTCTATGAGGTGCCTTAAGAACTCATCAGAT
* * *
49680847 AAATATGCCCCACCTCGACCTGACCGAAGTGCCTTTATGGATAAACTTAGTTGTTTCTACACTTC
455 AAATATGCCCCACCTCGACCAGACCGAAGTGCCTTTATGGGTAAACGTAGTTGTTTCTACACTTC
*
49680912 CACACGAAACTTTTTGAATTTATCAAAAGTTTCACTCTTGCGATGCATTAGGTATACATGTCCAT
520 CACACGAAACTTTTTGAATTTATCAAAAGTTTCACTCTTGCGATGCATCAGGTATACATGTCCAT
* *
49680977 ATTTGGAATAGGCATTGATAAAGGTTACATAATACTCGTAAACACCTCT
585 ATTTGGAATAGTCATTGATAAAGGTTACATAATACTCGTAACCACCTCT
* * *
49681026 TTTCTAGAGCTTCGAGTCAACACTCTACATCGCTTCGTCATATGTGAGCAAGGCATCATCTTCCT
1 TTTCTAGAGCTTGGAATCAACACTCTACATCGCTTCGTCATATGTGAGTAAGGCATCATCTTCCT
* *
49681091 GTTCAGTAGACTCAGTGTTAAAAACACTTCTGCTAGATTGGAAGAACTCCAGCCTATGTGAGTCC
66 GTTCAGCAGACTCAGTGTTAAAAACACTTCTGCTAGATTGGAAGAACTCCAGCCTATGTGAGTCT
* * *
49681156 GACTTTCTTGTATCTTTATCCAATACGTGGGTCAGACATCCCAAAATCCTAAATTGTATAAGATT
131 GACTTTCTTGCATCTTTATCCAATACGTGGGTCGGACATCCCAAAATCCTAAAATGTATAAGATT
* *
49681221 CAACTTCCTACCATGCCACAATTTGTATAGAGTGTTCGATTCTGCCTTTTTTGGCACATCATTCA
196 CAACTTCCTACCATGCCACAATTTGTATAGAGTTTTCGATTCTGCCTTATTTGGCACATCATTCA
* * * *
49681286 GAACATAACAAGTCGTTTTTACAACGTATCCCTAAAAAGTGGTTGACAACTTCAAATAACTTAAT
261 GAATATAACAAGTCGTTTGTACAACGTATCCCCAAAAAGAGGTTGACAACTTCAAATAACTTAAT
* * * * *
49681351 ATCGAATATACCATGTCTAATAATGTTC-ATTTTCTTATCTCTACTGTGCCATTCTATTATGGAG
326 ATCGAATATACCATGTCTAACAATGTTCGA-TTTCTTCTCTCTGCTGTGCCATTCTGTTGTGGAG
* * *
49681415 TGCCTGGCACGGTTAATTTGGATAGAATCTCATTCTCTATGAGGTGCCTTAAGAACTCATCAGAT
390 TGCCCGACACGGTTAATTGGGATAGAATCTCATTCTCTATGAGGTGCCTTAAGAACTCATCAGAT
* * * *
49681480 AAATATCCCCCACCTAGACAAGACCGAAGTGCCTTTATGGGTAAACGTAGATGTTTCTACACTTC
455 AAATATGCCCCACCTCGACCAGACCGAAGTGCCTTTATGGGTAAACGTAGTTGTTTCTACACTTC
49681545 CACACGAAACTTTTTGAATTTATCAAAAGTTTCACTCTTGCGATGCATCAGGTATACATGTCCAT
520 CACACGAAACTTTTTGAATTTATCAAAAGTTTCACTCTTGCGATGCATCAGGTATACATGTCCAT
* * * *
49681610 ATTTGGAATAGACATTGATAAAGGTTACATAACACTCATAACCACTTCT
585 ATTTGGAATAGTCATTGATAAAGGTTACATAATACTCGTAACCACCTCT
* * * *
49681659 TTTCTAGAGCTTAGAATCAACACTCTACAAT-GCTTCATCATATGTGAGTGAGGAATCATCTTCC
1 TTTCTAGAGCTTGGAATCAACACTCTAC-ATCGCTTCGTCATATGTGAGTAAGGCATCATCTTCC
*
49681723 TGTTCAGCAGACTCAGTGTTAAAAACACTTCTGCTAGATTGGAATAACTCCAGCCTATGTGAGTC
65 TGTTCAGCAGACTCAGTGTTAAAAACACTTCTGCTAGATTGGAAGAACTCCAGCCTATGTGAGTC
* ** *
49681788 TGACATTCTTGCATCTTTATGAAATACGTGGGTCGGACATCCCAAAATCCTAAAATGTATACGAT
130 TGACTTTCTTGCATCTTTATCCAATACGTGGGTCGGACATCCCAAAATCCTAAAATGTATAAGAT
* * * *
49681853 TCAACTTCCTACCATGCCACAATTTGTATAGAGTTTTCGATTCTGCGTTATTTGGGACATTACTC
195 TCAACTTCCTACCATGCCACAATTTGTATAGAGTTTTCGATTCTGCCTTATTTGGCACATCATTC
* * *
49681918 AGAAAATAACAAATCGTTTGTACAACGTATCCCCAAAAAGACGTTGACAACTTCAAATAACTTAA
260 AGAATATAACAAGTCGTTTGTACAACGTATCCCCAAAAAGAGGTTGACAACTTCAAATAACTTAA
* * * *
49681983 TATCGAATATACCATGTCCAGCAATGTTCGATTTTTTCTCTCTACTGTGCCATTCTGTTGTGGAG
325 TATCGAATATACCATGTCTAACAATGTTCGATTTCTTCTCTCTGCTGTGCCATTCTGTTGTGGAG
* * *
49682048 TGGCTGACACGGTTAATTGGGATAGAATCTCATTCTCTGTGAGGTGCCTTAAGAACTCATCAGAT
390 TGCCCGACACGGTTAATTGGGATAGAATCTCATTCTCTATGAGGTGCCTTAAGAACTCATCAGAT
* *
49682113 AAATATGCCCCACCTCGACCAGACCAAAGTGCCTTTATGGGTAAACGTAGTTCTTTCTACACTTC
455 AAATATGCCCCACCTCGACCAGACCGAAGTGCCTTTATGGGTAAACGTAGTTGTTTCTACACTTC
* * * *
49682178 CACATGAAACTTTTTCAATTTATTACAAGTTTCACTCTTGCGATGCATCAGGTATACATGTCCAT
520 CACACGAAACTTTTTGAATTTATCAAAAGTTTCACTCTTGCGATGCATCAGGTATACATGTCCAT
* * *
49682243 ATTTGGAATAGTCATTGATAAAGGTTATATAATACTCGTAACCATCTAT
585 ATTTGGAATAGTCATTGATAAAGGTTACATAATACTCGTAACCACCTCT
* * * * *
49682292 TTTCTAGAGCCTGGGATCAACACTCTACATCGTTTCGTCATTTGTGAGCAAGGCATCATCTTCCT
1 TTTCTAGAGCTTGGAATCAACACTCTACATCGCTTCGTCATATGTGAGTAAGGCATCATCTTCCT
* * * *
49682357 ATTCAGCAGACTTAGTGTTAAAAACACTTCTGCTAGATTGGAAGAACTCCAGCCTATGTGATTCC
66 GTTCAGCAGACTCAGTGTTAAAAACACTTCTGCTAGATTGGAAGAACTCCAGCCTATGTGAGTCT
*
49682422 GACTTTCTTGCATCTTTATCCAAAACGTGGGTCGGACATCCCAAAATCCTAAAATGTATAAGATT
131 GACTTTCTTGCATCTTTATCCAATACGTGGGTCGGACATCCCAAAATCCTAAAATGTATAAGATT
* *
49682487 CAACTTCCTACCATGCCACAATTTGCATAGAGTTTTCGATTCTACCTTATTTGGCACATCATTCA
196 CAACTTCCTACCATGCCACAATTTGTATAGAGTTTTCGATTCTGCCTTATTTGGCACATCATTCA
* * *
49682552 GAATATAACAAGTCATTTGTACAACGCATCCCCAAAAAGAGGTTGACAACTTCAAATAACCTAAT
261 GAATATAACAAGTCGTTTGTACAACGTATCCCCAAAAAGAGGTTGACAACTTCAAATAACTTAAT
* * *
49682617 ATCGAATATACCATGTCTAACAATGTTCTATTTCTTCTCTCTGCTGTGCCATTCTGTTATGGTGT
326 ATCGAATATACCATGTCTAACAATGTTCGATTTCTTCTCTCTGCTGTGCCATTCTGTTGTGGAGT
* * * *
49682682 TCCCGACACGGTTAATTGGGATAGAATCTTATTCTCTATGAGGTGGCTTAACAACTCATCAGATA
391 GCCCGACACGGTTAATTGGGATAGAATCTCATTCTCTATGAGGTGCCTTAAGAACTCATCAGATA
* * * * * * *
49682747 AATATGCCCCACCTCGACTAGACCGTAGGGGCTTTATGTGTAAACGTAGGTGTTTCTACTCTTCC
456 AATATGCCCCACCTCGACCAGACCGAAGTGCCTTTATGGGTAAACGTAGTTGTTTCTACACTTCC
* * * *
49682812 ACACGAAACTTTTTCAATTTATCAAAAGTTTCACTCTTGTGATGCATTAAGTATACATGTCCATA
521 ACACGAAACTTTTTGAATTTATCAAAAGTTTCACTCTTGCGATGCATCAGGTATACATGTCCATA
*
49682877 TTTGGAATAGTCATTGATAAAGGTTACATAAAACTCGTAACCACCTCT
586 TTTGGAATAGTCATTGATAAAGGTTACATAATACTCGTAACCACCTCT
* * * *
49682925 TTTTTAGATCTTGGAATCAACACTCTACATCGCTTCGTCATATGTGCGTAAGGCATCTTCTTCCT
1 TTTCTAGAGCTTGGAATCAACACTCTACATCGCTTCGTCATATGTGAGTAAGGCATCATCTTCCT
* * * *
49682990 GTTCAGCAGACTTAGTGTTAAAAGCACTTCTGCTAGATTGGATGAAGTCCAGCCTATGTGAGTCT
66 GTTCAGCAGACTCAGTGTTAAAAACACTTCTGCTAGATTGGAAGAACTCCAGCCTATGTGAGTCT
* * *
49683055 GACTTTCTTGTATCTTTATCCAATACGTGGGTTGGACATCCCAAAATCCTAAAACGTATAAGATT
131 GACTTTCTTGCATCTTTATCCAATACGTGGGTCGGACATCCCAAAATCCTAAAATGTATAAGATT
* * * * *
49683120 CAACTTCCGACCATGCCGCAATTTGTATAGAGTTTTCAATTCTGCCTTATTTGGCACAACATTTA
196 CAACTTCCTACCATGCCACAATTTGTATAGAGTTTTCGATTCTGCCTTATTTGGCACATCATTCA
* * **
49683185 AAATATAACAAGTCGTTT-TACAACGTATCCCCCAAAAGAATTTGACAACTTCAAATAACTTAAT
261 GAATATAACAAGTCGTTTGTACAACGTATCCCCAAAAAGAGGTTGACAACTTCAAATAACTTAAT
* *
49683249 ATCGAATATACCATGTCTAGCAATGTTCGATTTCTTCTCTCTGCTGTGCCATTCTATTGTGGAGT
326 ATCGAATATACCATGTCTAACAATGTTCGATTTCTTCTCTCTGCTGTGCCATTCTGTTGTGGAGT
49683314 GCCCGACACGGTTAATTGGGATAGAATCTCATTCTCTATGAGGTGCCTTAAGAACTCATCAGATA
391 GCCCGACACGGTTAATTGGGATAGAATCTCATTCTCTATGAGGTGCCTTAAGAACTCATCAGATA
* * *
49683379 AATATGCCTCACCTCGACCAGACCGAAGTGCCTTTTTGGGTAAACGTAGTTCTTTCTACACTTCC
456 AATATGCCCCACCTCGACCAGACCGAAGTGCCTTTATGGGTAAACGTAGTTGTTTCTACACTTCC
*
49683444 ACATGAAACTTTTTGAATTTATCAAAAGTTTCACTCTTGCGATGCATCAGGTATACATGTCCATA
521 ACACGAAACTTTTTGAATTTATCAAAAGTTTCACTCTTGCGATGCATCAGGTATACATGTCCATA
*
49683509 TTTGGAATAGTCATTGATAAAGGTTACATAATACTCGTATCCACCTCT
586 TTTGGAATAGTCATTGATAAAGGTTACATAATACTCGTAACCACCTCT
* * *
49683557 TTTCTAGAGCTTGGAATCAACACTCTATATCGCTTCGTCATATGTGAGTGAGGCATCATCTTCAT
1 TTTCTAGAGCTTGGAATCAACACTCTACATCGCTTCGTCATATGTGAGTAAGGCATCATCTTCCT
* * * *
49683622 ATTCAGCAGACTCAGTGTTAAAAACACTTATGCTAGATTGGAAGAACTCCAGCCTATGTGATTCC
66 GTTCAGCAGACTCAGTGTTAAAAACACTTCTGCTAGATTGGAAGAACTCCAGCCTATGTGAGTCT
* *
49683687 GACTTTCTTGCATCTTTATCCAATACGTGGGTCGGACATCCTAAAATCTTAAAATGTATAAGATT
131 GACTTTCTTGCATCTTTATCCAATACGTGGGTCGGACATCCCAAAATCCTAAAATGTATAAGATT
* * *
49683752 CAACTTCCTACCATGCCACAATTTGTATAGAATTTTCGATTCTTCCTTATTTGGCACATCGTTCA
196 CAACTTCCTACCATGCCACAATTTGTATAGAGTTTTCGATTCTGCCTTATTTGGCACATCATTCA
* * * *
49683817 GAACATAACAAGTTGTTTTTACAACGTATCCCCAAAAAGAGGTTGACAACTTCAAATAAATTAAT
261 GAATATAACAAGTCGTTTGTACAACGTATCCCCAAAAAGAGGTTGACAACTTCAAATAACTTAAT
* * * *
49683882 ATCGAATATACCATGTCTAACAATGATCGATTTCTTCTCCCTGCTGTACCATTCTGTTATGGAGT
326 ATCGAATATACCATGTCTAACAATGTTCGATTTCTTCTCTCTGCTGTGCCATTCTGTTGTGGAGT
* * *
49683947 GCCCGAAACGGTTAATTGGGATAGAATCTCATTCTCTATGAGGTGCTTTAAGAACTCATCAGGTA
391 GCCCGACACGGTTAATTGGGATAGAATCTCATTCTCTATGAGGTGCCTTAAGAACTCATCAGATA
*
49684012 AATATGCCCCACCTCGACCAGACCGAAGTTCCTTTATGGGTAAACGTAGTTGTTTCTACACTTCC
456 AATATGCCCCACCTCGACCAGACCGAAGTGCCTTTATGGGTAAACGTAGTTGTTTCTACACTTCC
49684077 ACACGAAACTTTTTGAATTTATCAAAAGTTTCACTCTTGCGATGCATCAGGTATACATGTCCATA
521 ACACGAAACTTTTTGAATTTATCAAAAGTTTCACTCTTGCGATGCATCAGGTATACATGTCCATA
* * *
49684142 TTTGGAAAAGTGATTGATAAA-GTTGCATAATACTCGTAACCACCTCT
586 TTTGGAATAGTCATTGATAAAGGTTACATAATACTCGTAACCACCTCT
* * *
49684189 TTTCTAGAGCTTGGAATCAACACTCTACATCTCTTCGTCATATGTGAGTATGACATCATCTTCCT
1 TTTCTAGAGCTTGGAATCAACACTCTACATCGCTTCGTCATATGTGAGTAAGGCATCATCTTCCT
* *
49684254 ATTCAGCAGACTCAGTGTTAAAAACACTTCTGTTAGATTGGAAGAACTCCAGCCTATGTGAGTCT
66 GTTCAGCAGACTCAGTGTTAAAAACACTTCTGCTAGATTGGAAGAACTCCAGCCTATGTGAGTCT
* * *
49684319 GGCTTTCTTGCATCTTTATTCAATACGTGGGTCGGACATCCCAAAATCCTAAAATGTATACGATT
131 GACTTTCTTGCATCTTTATCCAATACGTGGGTCGGACATCCCAAAATCCTAAAATGTATAAGATT
* *
49684384 CAACTTCCTACCATGCCACAATTTGTATAGAGTTTTCGATTCTACCTTATTTGGCACATCATTCT
196 CAACTTCCTACCATGCCACAATTTGTATAGAGTTTTCGATTCTGCCTTATTTGGCACATCATTCA
* *
49684449 GAATATAACAAGTCATTTGTACAACGCATCCCCAAAAAGAGGTTGACAACTTCAAATAACTTAAT
261 GAATATAACAAGTCGTTTGTACAACGTATCCCCAAAAAGAGGTTGACAACTTCAAATAACTTAAT
* * * *
49684514 ATCGAATATACCATGTCTAACAATGTTCGATTTCTTCTCTCTGCTATGCGATTTTGTTGTGGGGT
326 ATCGAATATACCATGTCTAACAATGTTCGATTTCTTCTCTCTGCTGTGCCATTCTGTTGTGGAGT
* *
49684579 GCCCGAAACGGTTAATTGGGATAGAATCTCATTCTCTTTGAGGTGCCTTAAGAACTCATCAGATA
391 GCCCGACACGGTTAATTGGGATAGAATCTCATTCTCTATGAGGTGCCTTAAGAACTCATCAGATA
*
49684644 AATATGCCCCACCTCGACCAGACCGAAGTGCCTTTATGGGTAAACATAGTTGTTTCTACACTTCC
456 AATATGCCCCACCTCGACCAGACCGAAGTGCCTTTATGGGTAAACGTAGTTGTTTCTACACTTCC
* * * *
49684709 GCACGAAACTTTTTGAATGTATCAAAAGTATT-ACACTTGCGATGCATTAGGTATACATGTCCAT
521 ACACGAAACTTTTTGAATTTATCAAAAGT-TTCACTCTTGCGATGCATCAGGTATACATGTCCAT
* * *
49684773 ATTTGGAATAGTCATTGATAAATGTTACATAATACTCGTAAGCACTTCT
585 ATTTGGAATAGTCATTGATAAAGGTTACATAATACTCGTAACCACCTCT
* * *
49684822 TTTCTAGAGCTTGGAATCAACACTCTACATCACTTCGTCATATGTGAGCAAGGCATCGTCTTCCT
1 TTTCTAGAGCTTGGAATCAACACTCTACATCGCTTCGTCATATGTGAGTAAGGCATCATCTTCCT
* * ** *
49684887 GTTCCGCAAACTCAGTGCCAAAAACACTTCTGCTAGATTGGAAGAACTCCAGCCTATGTGAATCT
66 GTTCAGCAGACTCAGTGTTAAAAACACTTCTGCTAGATTGGAAGAACTCCAGCCTATGTGAGTCT
* *
49684952 GACTTTCTTGCATCCTTATCCAATACGTGGGTCGGACATCCCAAAATCCTAAAATGTATAAGATC
131 GACTTTCTTGCATCTTTATCCAATACGTGGGTCGGACATCCCAAAATCCTAAAATGTATAAGATT
* * * *
49685017 CAACTTCCTACCATGCCACAATTTGAATAGAGTTTTCGATTCTTCCTTATTCGGCACATCGTTCA
196 CAACTTCCTACCATGCCACAATTTGTATAGAGTTTTCGATTCTGCCTTATTTGGCACATCATTCA
** * *
49685082 GAATATAACAAGTCGTTTGTACAACGTAAACCCAAAAAGAGGTTGACAACTTTAAATAACTTTAT
261 GAATATAACAAGTCGTTTGTACAACGTATCCCCAAAAAGAGGTTGACAACTTCAAATAACTTAAT
* * * *
49685147 ATCAAATAGACCATGTCTAAGAATGATT-GATTTCTTCTCTTTGCTGTGCCATTCTGTTGTGGAG
326 ATCGAATATACCATGTCTAACAATG-TTCGATTTCTTCTCTCTGCTGTGCCATTCTGTTGTGGAG
* * *
49685211 TGCCCGACACAGTTATTTGGGATAGAATCTCATTCTCTATGAGGTGCCTTAAGAACTCATTAGAT
390 TGCCCGACACGGTTAATTGGGATAGAATCTCATTCTCTATGAGGTGCCTTAAGAACTCATCAGAT
* * * * * *
49685276 AAATATTCACGACCTCGACCAGAACGAAGTTCCTTTATGGGT-AACGTAGTTGTTTGTACACTTC
455 AAATATGCCCCACCTCGACCAGACCGAAGTGCCTTTATGGGTAAACGTAGTTGTTTCTACACTTC
* * **
49685340 CACACGAAACTTTTTGAATTTATCAAAAGTTTCACTCTTGCGATACATCAGGTATACACGTTTAT
520 CACACGAAACTTTTTGAATTTATCAAAAGTTTCACTCTTGCGATGCATCAGGTATACATGTCCAT
* ** **
49685405 ATTTGGAATAGTCATTGACAAAGGTTACATAATACTTATAAGTACCTCT
585 ATTTGGAATAGTCATTGATAAAGGTTACATAATACTCGTAACCACCTCT
* * *
49685454 TTTCTAGAGCTTGGAATCAACCCTCTACATCGCTTCGTCATATGTTAGTAAGGGATCATCTTCCT
1 TTTCTAGAGCTTGGAATCAACACTCTACATCGCTTCGTCATATGTGAGTAAGGCATCATCTTCCT
* * * * *
49685519 ATTTAGCAGACTCAGTGTTAAAAACACTTCTGTTATATTGGAAGAACTCCAGCCTATGTGAGTCC
66 GTTCAGCAGACTCAGTGTTAAAAACACTTCTGCTAGATTGGAAGAACTCCAGCCTATGTGAGTCT
* *
49685584 GACTTTCTTGCATCTTTATTCAATACGTGGGTCGGACATCCCAAAATCCTAAAATGTATACGATT
131 GACTTTCTTGCATCTTTATCCAATACGTGGGTCGGACATCCCAAAATCCTAAAATGTATAAGATT
*
49685649 CAACTTCCTACCATGCCACAATTTGTATAGAGTTTTCGATTCTACCTTATTTGGCACATCATTCA
196 CAACTTCCTACCATGCCACAATTTGTATAGAGTTTTCGATTCTGCCTTATTTGGCACATCATTCA
* *
49685714 GAATATAACAAGTCGTTTGTACAACGCATCCCCAAAAAGAGGTTGACAACTTCAAATAACATAAT
261 GAATATAACAAGTCGTTTGTACAACGTATCCCCAAAAAGAGGTTGACAACTTCAAATAACTTAAT
* *
49685779 ATCGAATATACCATGTCTAAAAATGTTCGATTTCTTCTCTCTGCTGTGCCATTCTGTTCTGGAGT
326 ATCGAATATACCATGTCTAACAATGTTCGATTTCTTCTCTCTGCTGTGCCATTCTGTTGTGGAGT
* *
49685844 GACCGACACGGTTAATTGGGATAGAATCTCATTCTCTATGAGGTGCATTAAGAA-TGCATCAGAT
391 GCCCGACACGGTTAATTGGGATAGAATCTCATTCTCTATGAGGTGCCTTAAGAACT-CATCAGAT
*
49685908 AAATTTGCCCCACCTCGACCAGACCGAAGTGCCTTTATGGGTAAACGTAGTTGTTTCTACACTTC
455 AAATATGCCCCACCTCGACCAGACCGAAGTGCCTTTATGGGTAAACGTAGTTGTTTCTACACTTC
* * * * *
49685973 CACACGAAGCTTTTTGAATGTATAAAAAGTATCACTCTTGTGATGCATCAGGTATACATGTCCAT
520 CACACGAAACTTTTTGAATTTATCAAAAGTTTCACTCTTGCGATGCATCAGGTATACATGTCCAT
49686038 ATTTGGAATAGTCATTGATAAAGGTTACATAATACTCGTAACCACCTCT
585 ATTTGGAATAGTCATTGATAAAGGTTACATAATACTCGTAACCACCTCT
* * * *
49686087 TTTCTAGAGCTTGGAATCAACACTCTAGATCACTTCATCATATGTGAGCAAGGCATCATCTTCCT
1 TTTCTAGAGCTTGGAATCAACACTCTACATCGCTTCGTCATATGTGAGTAAGGCATCATCTTCCT
* *
49686152 GTTCAGCAGACTTAGTGTTCAAAACACTTCTGCTAGATTGGAAGAACTCCAGCCTATGTGAGTCT
66 GTTCAGCAGACTCAGTGTTAAAAACACTTCTGCTAGATTGGAAGAACTCCAGCCTATGTGAGTCT
* ** *
49686217 GACTTTCTTGCATCTTTATCCAGTACGTCTGTTGGACATCCCAAAATCCTAAAATGTATAAGATT
131 GACTTTCTTGCATCTTTATCCAATACGTGGGTCGGACATCCCAAAATCCTAAAATGTATAAGATT
* * *
49686282 CAACTTCCTACCATGCCACAATTTGTATAGAGTTTTCGATTATTCTTTATTTGGCACATCATTCA
196 CAACTTCCTACCATGCCACAATTTGTATAGAGTTTTCGATTCTGCCTTATTTGGCACATCATTCA
49686347 GAATA
261 GAATA
49686352 ATGCATCAGG
Statistics
Matches: 8937, Mismatches: 793, Indels: 45
0.91 0.08 0.00
Matches are distributed among these distances:
630 20 0.00
631 825 0.09
632 2759 0.31
633 5327 0.60
634 6 0.00
ACGTcount: A:0.30, C:0.22, G:0.16, T:0.33
Consensus pattern (633 bp):
TTTCTAGAGCTTGGAATCAACACTCTACATCGCTTCGTCATATGTGAGTAAGGCATCATCTTCCT
GTTCAGCAGACTCAGTGTTAAAAACACTTCTGCTAGATTGGAAGAACTCCAGCCTATGTGAGTCT
GACTTTCTTGCATCTTTATCCAATACGTGGGTCGGACATCCCAAAATCCTAAAATGTATAAGATT
CAACTTCCTACCATGCCACAATTTGTATAGAGTTTTCGATTCTGCCTTATTTGGCACATCATTCA
GAATATAACAAGTCGTTTGTACAACGTATCCCCAAAAAGAGGTTGACAACTTCAAATAACTTAAT
ATCGAATATACCATGTCTAACAATGTTCGATTTCTTCTCTCTGCTGTGCCATTCTGTTGTGGAGT
GCCCGACACGGTTAATTGGGATAGAATCTCATTCTCTATGAGGTGCCTTAAGAACTCATCAGATA
AATATGCCCCACCTCGACCAGACCGAAGTGCCTTTATGGGTAAACGTAGTTGTTTCTACACTTCC
ACACGAAACTTTTTGAATTTATCAAAAGTTTCACTCTTGCGATGCATCAGGTATACATGTCCATA
TTTGGAATAGTCATTGATAAAGGTTACATAATACTCGTAACCACCTCT
Found at i:49686629 original size:336 final size:337
Alignment explanation
Indices: 49686015--49686687 Score: 1114
Period size: 336 Copynumber: 2.0 Consensus size: 337
49686005 CACTCTTGTG
49686015 ATGCATCAGGTATACATGTCCATATTTGGAATAGTCATTGATAAAGGTTACATAATACTCGTAAC
1 ATGCATCAGGTATACATGTCCATATTTGGAATAGTCATTGATAAAGGTTACATAATACTCGTAAC
* *
49686080 CACCTCTTTTCTAGAGCTTGGAATCAACACTCTAGATCACTTCATCATATGTGAGCAAGGCATCA
66 CACCTCTTTTCTAGAGCTTGGAATCAACACTCTAAATCACTTCATCATATGTGAGCAAGACATCA
* * *
49686145 TCTTCCTGTTCAGCAGACTTAGTGTTCAAAACACTTCTGCTAGATTGGAAGAACTCCAGCCTATG
131 TCTTCCTGTTCAGCAGACTCAGTGTTAAAAACACTTCTGCTAGATTGGAAGAACTCCAGCCTACG
* * * * *
49686210 TGAGTCTGACTTTCTTGCATCTTTATCCAGTACGTCTGTTGGACATCCCAAAATCCTAAAATGTA
196 TGAGTCCGACTTTCTTGCATCGTTATCCAATACGTCGGTCGGACATCCCAAAATCCTAAAATGTA
* * * *
49686275 TAAGATTCAACTTCCTACCATGCCACAATTTGTATAGAGTTTTCGATTATTCTTTATTTGGCACA
261 TAAGATTCAACTTCCTACCACGCCACAATTTGTATAGAGTTTCCGATTATACCTTATTTGGCACA
* *
49686340 TCATTCAGAATA
326 CCATTAAGAATA
*
49686352 ATGCATCAGGTATACATGTCCATATTTGGAGTAGTCATTGATAAAGGTTACATAATACTCGTAAC
1 ATGCATCAGGTATACATGTCCATATTTGGAATAGTCATTGATAAAGGTTACATAATACTCGTAAC
* * *
49686417 CACCTCTTTTCTA-AGCTTGGAATCAACACTCTAAATCGCTTCGTCATATGTGAGTAAGACATCA
66 CACCTCTTTTCTAGAGCTTGGAATCAACACTCTAAATCACTTCATCATATGTGAGCAAGACATCA
*
49686481 TCTTCTTGTTCAGCAGACTCAGTGTTAAAAACACTTCTGCTAGATTGGAAGAACTCCAGCCTACG
131 TCTTCCTGTTCAGCAGACTCAGTGTTAAAAACACTTCTGCTAGATTGGAAGAACTCCAGCCTACG
*
49686546 TGAGTCCGACTTTCTTGCATCGTTATCCAATACGTGGGTCGGACATCCCAAAATCCTAAAATGTA
196 TGAGTCCGACTTTCTTGCATCGTTATCCAATACGTCGGTCGGACATCCCAAAATCCTAAAATGTA
* * *
49686611 TACGATTGAACTTCCTACCACGCCACAATTTGTATAGAGTTTCCGATTCTACCTTATTTGGCACA
261 TAAGATTCAACTTCCTACCACGCCACAATTTGTATAGAGTTTCCGATTATACCTTATTTGGCACA
49686676 CCATTAAGAATA
326 CCATTAAGAATA
49686688 TAACAAGTCG
Statistics
Matches: 311, Mismatches: 25, Indels: 1
0.92 0.07 0.00
Matches are distributed among these distances:
336 234 0.75
337 77 0.25
ACGTcount: A:0.30, C:0.22, G:0.16, T:0.32
Consensus pattern (337 bp):
ATGCATCAGGTATACATGTCCATATTTGGAATAGTCATTGATAAAGGTTACATAATACTCGTAAC
CACCTCTTTTCTAGAGCTTGGAATCAACACTCTAAATCACTTCATCATATGTGAGCAAGACATCA
TCTTCCTGTTCAGCAGACTCAGTGTTAAAAACACTTCTGCTAGATTGGAAGAACTCCAGCCTACG
TGAGTCCGACTTTCTTGCATCGTTATCCAATACGTCGGTCGGACATCCCAAAATCCTAAAATGTA
TAAGATTCAACTTCCTACCACGCCACAATTTGTATAGAGTTTCCGATTATACCTTATTTGGCACA
CCATTAAGAATA
Found at i:49688769 original size:631 final size:633
Alignment explanation
Indices: 49686352--49693005 Score: 10965
Period size: 633 Copynumber: 10.5 Consensus size: 633
49686342 ATTCAGAATA
*
49686352 ATGCATCAGGTATACATGTCCATATTTGGAGTAGTCATTGATAAAGGTTACATAATACTCGTAAC
1 ATGCATCAGGTATACATGTCCATATTTGGAATAGTCATTGATAAAGGTTACATAATACTCGTAAC
* *
49686417 CACCTCTTTTCTA-AGCTTGGAATCAACACTCTAAATCGCTTCGTCATATGTGAGTAAGACATCA
66 CACCTCTTTTCTAGAGCTTGGAATCAACACTCTACATCGCTTCGTCATATGTGAGTAAGGCATCA
* * *
49686481 TCTTCTTGTTCAGCAGACTCAGTGTTAAAAACACTTCTGCTAGATTGGAAGAACTCCAGCCTACG
131 TCTTCCTATTCAGCAGACTCAGTGTTAAAAACACTTCTGCTAGATTGGAAGAACTCCAGCCTATG
*
49686546 TGAGTCCGACTTTCTTGCATCGTTATCCAATACGTGGGTCGGACATCCCAAAATCCTAAAATGTA
196 TGAGTCCGACTTTCTTGCATCTTTATCCAATACGTGGGTCGGACATCCCAAAATCCTAAAATGTA
* * * *
49686611 TACGATTGAACTTCCTACCACGCCACAATTTGTATAGAGTTTCCGATTCTACCTTATTTGGCACA
261 TAAGATTCAACTTCCTACCATGCCACAATTTGTATAGAGTTTTCGATTCTACCTTATTTGGCACA
* * *
49686676 CCATTAAGAATATAACAAGTCGTTTGTACAACGTATCCCCAAAAAGAGGTTGACAACTTCAAATA
326 TCATTCAGAATATAACAAGTCGTTTGTACAACGCATCCCCAAAAAGAGGTTGACAACTTCAAATA
* * *
49686741 ATTTAATATCGAATATACCATGTCTATCAATGTTCGATTTCTTCTCTCTACTGTGCCATTCTGTT
391 ACTTAATATCGAATATACCATGTCTAACAATGTTCGATTTCTTCTCTCTGCTGTGCCATTCTGTT
49686806 GTGGAGTGCCCGACACGGTTAATTGGGATAGAATCTCATTCTCTATGAGGTGCCTTAAGAACTCA
456 GTGGAGTGCCCGACACGGTTAATTGGGATAGAATCTCATTCTCTATGAGGTGCCTTAAGAACTCA
* * *
49686871 TCAGATAAATATGCCCTACCTTGACCAGACCGAAGTGCCTTTATGGGTAAACGTAGTTGCTTCTA
521 TCAGATAAATATGCCCCACCTCGACCAGACCGAAGTGCCTTTATGGGTAAACGTAGTTGTTTCTA
* * * * *
49686936 CACTTTCACACGAAACTTTTTGAATTTCTGAAATGTTTCACTCTTGCG
586 CACTTCCACACGAAACTTTTTGAATGTATCAAAAGTTTCACTCTTGCG
* * *
49686984 ATACATCAGGTATACATGTCCATATTTGGAATAGTCATTGATAAAGGTTACATAATACTTGCAAC
1 ATGCATCAGGTATACATGTCCATATTTGGAATAGTCATTGATAAAGGTTACATAATACTCGTAAC
* *
49687049 CACCTCTTTTCTAGAGCTTGGAATAAACACTCTACATCGCTTCGTCATATGTGAGTAAGACATCA
66 CACCTCTTTTCTAGAGCTTGGAATCAACACTCTACATCGCTTCGTCATATGTGAGTAAGGCATCA
*
49687114 TCTTCCTATTCAGCAGACTCAGTGTTAAAAACACTTCTGTTAGATTGGAAGAACTCCAGCCTATG
131 TCTTCCTATTCAGCAGACTCAGTGTTAAAAACACTTCTGCTAGATTGGAAGAACTCCAGCCTATG
* *
49687179 TGAGTCTGACTTTCTTGCATCTTTATCCAATACGTGGGTCGGACATCCCAAAATCCTAAAATGTT
196 TGAGTCCGACTTTCTTGCATCTTTATCCAATACGTGGGTCGGACATCCCAAAATCCTAAAATGTA
*
49687244 TACGATTCAACTTCCTACCATGCCACAATTTGTATAGAGTTTTCGATTCTACCTTATTTGGCACA
261 TAAGATTCAACTTCCTACCATGCCACAATTTGTATAGAGTTTTCGATTCTACCTTATTTGGCACA
*
49687309 TCATTCAGAATATAACAAGTCATTTGTACAACGCATCCCCAAAAAGAGGTTGACAACTTCAAATA
326 TCATTCAGAATATAACAAGTCGTTTGTACAACGCATCCCCAAAAAGAGGTTGACAACTTCAAATA
* *
49687374 ACATAATATCGAATATACCATGTCTAACAATGTTCGATTTCTTCTCTCTGCTCTGCCATTCTGTT
391 ACTTAATATCGAATATACCATGTCTAACAATGTTCGATTTCTTCTCTCTGCTGTGCCATTCTGTT
* * *
49687439 GTGGGGTGCCCGACATGGTTAATTGGGATAGAATCTCGTTCTCTATGAGGTGCCTTAAGAACTCA
456 GTGGAGTGCCCGACACGGTTAATTGGGATAGAATCTCATTCTCTATGAGGTGCCTTAAGAACTCA
49687504 TCAGATAAATATGCCCCACCTCGACCAGACCGAAGTGCCTTTATGGGTAAACGTAGTTGTTTCTA
521 TCAGATAAATATGCCCCACCTCGACCAGACCGAAGTGCCTTTATGGGTAAACGTAGTTGTTTCTA
* * *
49687569 CACTTCCACATGAAACTTTTTCAATTTATC-AAAGTTTCACTCTTGCG
586 CACTTCCACACGAAACTTTTTGAATGTATCAAAAGTTTCACTCTTGCG
49687616 ATGCATCAGGTATACATGTCCATATTTGGAATAGTCATTGATAAAGGTTACATAATACTCGTAAC
1 ATGCATCAGGTATACATGTCCATATTTGGAATAGTCATTGATAAAGGTTACATAATACTCGTAAC
* *
49687681 CACCACTTTTCTAGAGCTTGGAATCAACACTCTACATCGCTTCGTCATATGTGAGTGAGGCATCA
66 CACCTCTTTTCTAGAGCTTGGAATCAACACTCTACATCGCTTCGTCATATGTGAGTAAGGCATCA
49687746 TCTT-CTATTCAGCAGACTCAGTGTTAAAAACACTTCTGCTAGATTGGAAGAACT-CAGCCT-TG
131 TCTTCCTATTCAGCAGACTCAGTGTTAAAAACACTTCTGCTAGATTGGAAGAACTCCAGCCTATG
* *
49687808 TGATTCTC-ACTTTCTTCCATCTTTATCCAATACGTGGGTCGGACATCCCAAAAT-CTAAAATGT
196 TGAGTC-CGACTTTCTTGCATCTTTATCCAATACGTGGGTCGGACATCCCAAAATCCTAAAATGT
*
49687871 ATAAGATTCAACTTCCTACCATGCCACAATTTGTATAGAGTTTTCGATTCTTCCTTATTTGGCAC
260 ATAAGATTCAACTTCCTACCATGCCACAATTTGTATAGAGTTTTCGATTCTACCTTATTTGGCAC
* * *
49687936 ATCATTCAGAACAAAACAAGTTGTTTGTACAACGCATCCCCAAAAAGAGGTTGACAACTTCAAAT
325 ATCATTCAGAATATAACAAGTCGTTTGTACAACGCATCCCCAAAAAGAGGTTGACAACTTCAAAT
* *
49688001 AACTTAATATCGAATATACCATGTCTAACAATGTTCGATTTCTTCTCTCTG-TCGTACCATTCTT
390 AACTTAATATCGAATATACCATGTCTAACAATGTTCGATTTCTTCTCTCTGCT-GTGCCATTCTG
49688065 TTGTGGAGTGCCCGACACGGTTAATTGGGATAGAATCTCATTCTCTATGAGGTGCCTTAAGAACT
454 TTGTGGAGTGCCCGACACGGTTAATTGGGATAGAATCTCATTCTCTATGAGGTGCCTTAAGAACT
* * *
49688130 CATCAGATAAATATGCCCCACCTCCACCAGACCGAAGTGCCTTTCTGGGTAAACATAGTTGTTTC
519 CATCAGATAAATATGCCCCACCTCGACCAGACCGAAGTGCCTTTATGGGTAAACGTAGTTGTTTC
* * * *
49688195 AACACTTTCACATGAAAC-TTTTGAATGTATCAAAAGTATCACTCTTGCG
584 TACACTTCCACACGAAACTTTTTGAATGTATCAAAAGTTTCACTCTTGCG
*
49688244 ATGCATCAGGTATACATGTCCATATTTGGAATAGTCATTTATAAAGGTTACATAATACTCGTAAC
1 ATGCATCAGGTATACATGTCCATATTTGGAATAGTCATTGATAAAGGTTACATAATACTCGTAAC
*
49688309 CACCTCTTTTCTAGAGCTTGGAATCAACACTCTACATCGCTTCGTCATATGTGAGCAAGGCATCA
66 CACCTCTTTTCTAGAGCTTGGAATCAACACTCTACATCGCTTCGTCATATGTGAGTAAGGCATCA
* * *
49688374 TCTTCTTGTTCAGCAGACTCAGTGTTAAAAACACTTCTGCTAGATTGGAAGAACTCCAGCCTACG
131 TCTTCCTATTCAGCAGACTCAGTGTTAAAAACACTTCTGCTAGATTGGAAGAACTCCAGCCTATG
* *
49688439 TAAGTCCGACTTTCTTGCATCGTTATCCAATACGTGGGTCGGACATCCCAAAATCCTAAAATGTA
196 TGAGTCCGACTTTCTTGCATCTTTATCCAATACGTGGGTCGGACATCCCAAAATCCTAAAATGTA
*
49688504 TAAGATTGAACTTCCTACCATGCCACAATTTGTATAGAG-TTTCGATTCTACCTTATTTGGCACA
261 TAAGATTCAACTTCCTACCATGCCACAATTTGTATAGAGTTTTCGATTCTACCTTATTTGGCACA
* * *
49688568 CCATTAAGAATATAACAAGTCGTTTGTACAACGTATCCCCAAAAAGAGGTTGACAACTTCAAATA
326 TCATTCAGAATATAACAAGTCGTTTGTACAACGCATCCCCAAAAAGAGGTTGACAACTTCAAATA
* *
49688633 ACTTAATATCGAATATACCATGTCTATCAATGTTCGATTTCTTCTCTCTACTGTGCCATTCTGTT
391 ACTTAATATCGAATATACCATGTCTAACAATGTTCGATTTCTTCTCTCTGCTGTGCCATTCTGTT
49688698 GTGGAGTGCCCGACACGGTTAATTGGGATAGAATCTCATTCTCTATGAGGTGCCTTAAGAACTCA
456 GTGGAGTGCCCGACACGGTTAATTGGGATAGAATCTCATTCTCTATGAGGTGCCTTAAGAACTCA
*
49688763 TCAGATAAATATG-CCCACCTTGACCAGACCGAAGTGCCTTTATGGGTAAACGTAGTTGTTTCTA
521 TCAGATAAATATGCCCCACCTCGACCAGACCGAAGTGCCTTTATGGGTAAACGTAGTTGTTTCTA
* * * *
49688827 CACTTTCACACGAAACTTTTTGAATTTCTCAAATGTTTCACTCTTGCG
586 CACTTCCACACGAAACTTTTTGAATGTATCAAAAGTTTCACTCTTGCG
* * *
49688875 ATACATCAGGTATACATGTCCATATTTGGAATAGTCATTGATAAA-GTTACATAATACTTGCAAC
1 ATGCATCAGGTATACATGTCCATATTTGGAATAGTCATTGATAAAGGTTACATAATACTCGTAAC
* *
49688939 CACCTCTTTTCTAGAGCTTGGAATAAACACTCTACATCGCTTCGTCATATGTGAGTAAGACATCA
66 CACCTCTTTTCTAGAGCTTGGAATCAACACTCTACATCGCTTCGTCATATGTGAGTAAGGCATCA
*
49689004 TCTTCCTATTCAGCAGACTCAGTGTTAAAAACACTTCTGTTAGATTGGAAGAACTCCAGCCTATG
131 TCTTCCTATTCAGCAGACTCAGTGTTAAAAACACTTCTGCTAGATTGGAAGAACTCCAGCCTATG
*
49689069 TGAGTCTGACTTTCTTGCATCTTTATCCAATACGTGGGTCGGACATCCCAAAATCCTAAAATGT-
196 TGAGTCCGACTTTCTTGCATCTTTATCCAATACGTGGGTCGGACATCCCAAAATCCTAAAATGTA
*
49689133 TACGATTCAACTTCCTACCATGCCACAATTTGTATAGAGTTTTCGATTCTACCTTATTTGGCACA
261 TAAGATTCAACTTCCTACCATGCCACAATTTGTATAGAGTTTTCGATTCTACCTTATTTGGCACA
*
49689198 TCATTCAGAATATAACAAGTCATTTGTACAACGCATCCCCAAAAAGAGGTTGACAACTTCAAATA
326 TCATTCAGAATATAACAAGTCGTTTGTACAACGCATCCCCAAAAAGAGGTTGACAACTTCAAATA
*
49689263 ACTTAATATCGAATATACCATGTCTAACAATGTTCGATTTCTTCTCTCTGCTCTGCCATTCTGTT
391 ACTTAATATCGAATATACCATGTCTAACAATGTTCGATTTCTTCTCTCTGCTGTGCCATTCTGTT
*
49689328 GTGG-GTGCCCGACATGGTTAATTGGGATAGAATCTCATTCTCTATGAGGTGCCTTAAGAACTCA
456 GTGGAGTGCCCGACACGGTTAATTGGGATAGAATCTCATTCTCTATGAGGTGCCTTAAGAACTCA
*
49689392 TCAGATAAATATGCCCCACCTCGACCAGACCGAAGTGCCTTTATGGGTAAACGTAGATGTTTCTA
521 TCAGATAAATATGCCCCACCTCGACCAGACCGAAGTGCCTTTATGGGTAAACGTAGTTGTTTCTA
* * * *
49689457 CACTTCCACATGAAACTTTTTCAATTTATCACAAGTTTCACTCTTGCG
586 CACTTCCACACGAAACTTTTTGAATGTATCAAAAGTTTCACTCTTGCG
49689505 ATGCATCAGGTATACATGTCCATATTTGGAATAGTCATTGATAAAGGTTACATAATACTCGTAAC
1 ATGCATCAGGTATACATGTCCATATTTGGAATAGTCATTGATAAAGGTTACATAATACTCGTAAC
* *
49689570 CACCACTTTTCTAGAGCTTGGAATCAACACTCTACATCGCTTCGTCATATGTGAGTGAGGCATCA
66 CACCTCTTTTCTAGAGCTTGGAATCAACACTCTACATCGCTTCGTCATATGTGAGTAAGGCATCA
* * *
49689635 TCTTCATATTCAGCAGACTCAGTGTTAAAAACACTTCTGCTAGATTGGAAGAACTCTAGCCTTTG
131 TCTTCCTATTCAGCAGACTCAGTGTTAAAAACACTTCTGCTAGATTGGAAGAACTCCAGCCTATG
* * *
49689700 TGATTCTC-ACTTTCTTCCATCTTTATCCAATACGTGGGTCGGACATCCCAAAATCTTAAAATGT
196 TGAGTC-CGACTTTCTTGCATCTTTATCCAATACGTGGGTCGGACATCCCAAAATCCTAAAATGT
* *
49689764 ATACGATTCAACTTCCTACCATGCCACAATTTGTATAGAGTTTTCGATTCTTCCTTATTTGGCAC
260 ATAAGATTCAACTTCCTACCATGCCACAATTTGTATAGAGTTTTCGATTCTACCTTATTTGGCAC
* * * *
49689829 ATCGTTCAGAACAAAACAAGTTGTTTGTACAACGCATCCCCAAAAAGAGGTTGACAACTTCAAAT
325 ATCATTCAGAATATAACAAGTCGTTTGTACAACGCATCCCCAAAAAGAGGTTGACAACTTCAAAT
* ** * * *
49689894 AAATTAATATATAATATACCATGTCTAACAATGATCGATTTCTTCTCCCTGCTGTACCATTCTGT
390 AACTTAATATCGAATATACCATGTCTAACAATGTTCGATTTCTTCTCTCTGCTGTGCCATTCTGT
* *
49689959 TATGGAGTGCCCGACACGGTTAATTGGGATAGAATCTTATTCTCTATGAGGTGCCTTAAGAACTC
455 TGTGGAGTGCCCGACACGGTTAATTGGGATAGAATCTCATTCTCTATGAGGTGCCTTAAGAACTC
**
49690024 ATCAGATAAATATGCCCCACCTCGACCAGACCGAAGTTTCTTTATGGGTAAACGTAGTTGTTTCT
520 ATCAGATAAATATGCCCCACCTCGACCAGACCGAAGTGCCTTTATGGGTAAACGTAGTTGTTTCT
* *
49690089 ACACTTCCACACGAAACTTTTTCAATTTATCAAAAGTTTCACTCTTGCG
585 ACACTTCCACACGAAACTTTTTGAATGTATCAAAAGTTTCACTCTTGCG
* * * *
49690138 ATACATCAGGTATACACGTCTATATTTGGAATAGTCATTGATAAGGGTTACATAATACTCGTAAC
1 ATGCATCAGGTATACATGTCCATATTTGGAATAGTCATTGATAAAGGTTACATAATACTCGTAAC
* * * *
49690203 CACCTTTTTTCTAGAGCTTGAAATTAACACTCTACATCGCTTCGTCATATGTGAGCAAGGCATCA
66 CACCTCTTTTCTAGAGCTTGGAATCAACACTCTACATCGCTTCGTCATATGTGAGTAAGGCATCA
* *
49690268 TCTTCTTATTCAGCAGACTCAGTGTTAAAAACACTTCTGTTAGATTGGAAGAACTCCAGCCTATG
131 TCTTCCTATTCAGCAGACTCAGTGTTAAAAACACTTCTGCTAGATTGGAAGAACTCCAGCCTATG
* *
49690333 TGAGTCCTACTTTCTTGCATCTTTATCCAATACGTGGCTCGGACATCCCAAAATCCTAAAATGTA
196 TGAGTCCGACTTTCTTGCATCTTTATCCAATACGTGGGTCGGACATCCCAAAATCCTAAAATGTA
*
49690398 TACGATTCAACTTCCTACCATGCCACAATTTGTATAGAGTTTTCGATTCTACCTTATTTGGCACA
261 TAAGATTCAACTTCCTACCATGCCACAATTTGTATAGAGTTTTCGATTCTACCTTATTTGGCACA
*
49690463 TCATTCAGAATATAACAAGTCATTTGTACAACGCATCCCCAAAAAGAGGTTGACAACTTCAAATA
326 TCATTCAGAATATAACAAGTCGTTTGTACAACGCATCCCCAAAAAGAGGTTGACAACTTCAAATA
* * * *
49690528 ACTTAATATCGAATATACCATGTCTAACAATGTTCAATTTCTACTCTCTGCTATGCCATTTTGTT
391 ACTTAATATCGAATATACCATGTCTAACAATGTTCGATTTCTTCTCTCTGCTGTGCCATTCTGTT
* * * *
49690593 GTGG-GTGCCCGCCATGGTTAATTAGGATAGAATCTCATTCTCTTTGAGGTGCCTTAAGAACTCA
456 GTGGAGTGCCCGACACGGTTAATTGGGATAGAATCTCATTCTCTATGAGGTGCCTTAAGAACTCA
* *
49690657 TCAGATAAATATGCCCCACCTCGCCCAGACCGAAGTGCCTTTATGGGTAAACATAGTTGTTTCTA
521 TCAGATAAATATGCCCCACCTCGACCAGACCGAAGTGCCTTTATGGGTAAACGTAGTTGTTTCTA
* * *
49690722 CACTTCCGCACGAAACTTTTTGAATGTATCAAAAGTATCACTCTTGTG
586 CACTTCCACACGAAACTTTTTGAATGTATCAAAAGTTTCACTCTTGCG
* * *
49690770 ATGCATTAGGTATACATGTCCATATTTGGAATAGTCATTGATAAATGTTACATAATACTCGTAAG
1 ATGCATCAGGTATACATGTCCATATTTGGAATAGTCATTGATAAAGGTTACATAATACTCGTAAC
* * *
49690835 CACCTCTTTTCTAGAGCTTGGAATCAACACTTTACATCGCTTCGTCATATGTGAGCAAGGCATAA
66 CACCTCTTTTCTAGAGCTTGGAATCAACACTCTACATCGCTTCGTCATATGTGAGTAAGGCATCA
* *
49690900 TCTTCTTGTTCAGCAGACTCAGTGTTAAAAACACTTCTGCTAGATTGGAAGAACTCCAGCCTATG
131 TCTTCCTATTCAGCAGACTCAGTGTTAAAAACACTTCTGCTAGATTGGAAGAACTCCAGCCTATG
*
49690965 TGAGTCTGACTTTCTTGCATCTTTATCCAATACGTGGGTCGGACATCCCAAAATCCTAAAATGTA
196 TGAGTCCGACTTTCTTGCATCTTTATCCAATACGTGGGTCGGACATCCCAAAATCCTAAAATGTA
* *
49691030 TAAGATCCAACTTCCTACCATGCCACAATTTGTATAGAGTTTTCGATTCTTCCTTATTTGGCACA
261 TAAGATTCAACTTCCTACCATGCCACAATTTGTATAGAGTTTTCGATTCTACCTTATTTGGCACA
* * * *
49691095 TCGTTCAAAATATAACAAGTCGTTTGTACAACGTATCCCCAAAAAGAGGTTGACAACTTTAAATA
326 TCATTCAGAATATAACAAGTCGTTTGTACAACGCATCCCCAAAAAGAGGTTGACAACTTCAAATA
* * *
49691160 ACTTAATATCGAATAGACCATGTCTAACAATGATCGATTTCTTCTCTTTGCTGTGCCATTCTGTT
391 ACTTAATATCGAATATACCATGTCTAACAATGTTCGATTTCTTCTCTCTGCTGTGCCATTCTGTT
* * * *
49691225 GTAGAGTGCCCGACACGGTTATTTGGGATAGAATCTCATTCTCTATAAGATG-CTTAAAGAACTC
456 GTGGAGTGCCCGACACGGTTAATTGGGATAGAATCTCATTCTCTATGAGGTGCCTT-AAGAACTC
* * * * * * *
49691289 ATCAGACAAATATGCACCACCTCGACCAGAACGAAGTTCGTTTATAGGTAAACGTAGTTGTTTGT
520 ATCAGATAAATATGCCCCACCTCGACCAGACCGAAGTGCCTTTATGGGTAAACGTAGTTGTTTCT
* * *
49691354 ACACTTCCACATGAAACTTTTTGAATGTATCAAAAGTATCACTCTTGTG
585 ACACTTCCACACGAAACTTTTTGAATGTATCAAAAGTTTCACTCTTGCG
* * * *
49691403 ATGCATTAGGTATACATGTCCATATTTGGAATAGTAATTGATAAAGGTTACATAATCCTCGTAAG
1 ATGCATCAGGTATACATGTCCATATTTGGAATAGTCATTGATAAAGGTTACATAATACTCGTAAC
* *
49691468 CACCTCTTTTCTAGAGCTTGGAATCAACACTCTACATCGCTTCGTCATATGTGAGTAAGGGATTA
66 CACCTCTTTTCTAGAGCTTGGAATCAACACTCTACATCGCTTCGTCATATGTGAGTAAGGCATCA
* * *
49691533 TCTTCCTATTCAGCAGACTCAGCGTTAAAAACACTTCCGTTAGATTGGAAGAACTCCAGCCTATG
131 TCTTCCTATTCAGCAGACTCAGTGTTAAAAACACTTCTGCTAGATTGGAAGAACTCCAGCCTATG
* * * * *
49691598 TCAGTCCGACTTTCTTGCATCTTTATCCAATACGTGGTTTGGACATCCCAAAATCCTGAGATGTA
196 TGAGTCCGACTTTCTTGCATCTTTATCCAATACGTGGGTCGGACATCCCAAAATCCTAAAATGTA
* *
49691663 TATGATTCAACTTCCTACCATGCCACAATTTGTATAGAGTTTTCGATTCTACATTATTTGGCACA
261 TAAGATTCAACTTCCTACCATGCCACAATTTGTATAGAGTTTTCGATTCTACCTTATTTGGCACA
*
49691728 TCATTCAGAATATAACAAGTCGTTTGTACAACGTATCCCCAAAAAGAGGTTGACAACTTCAAATA
326 TCATTCAGAATATAACAAGTCGTTTGTACAACGCATCCCCAAAAAGAGGTTGACAACTTCAAATA
* * * * * *
49691793 ACTTAATATCGTATATACCATGTCTAACAGTGTTCAATTTCTTCTCTCTACTTTGCTATTCTGTT
391 ACTTAATATCGAATATACCATGTCTAACAATGTTCGATTTCTTCTCTCTGCTGTGCCATTCTGTT
* *
49691858 GTGGAGTGCCCGATACGGTTTAATTGGGATAGAATCTCATTCTCTATGAGGTACCTTAAGAACTC
456 GTGGAGTGCCCGACACGG-TTAATTGGGATAGAATCTCATTCTCTATGAGGTGCCTTAAGAACTC
* *
49691923 ATCAGATAAATATGCCCCACCTCGACCAGACCGAAGTCCCTTTATGGGTAAACGTAATTGTTTCT
520 ATCAGATAAATATGCCCCACCTCGACCAGACCGAAGTGCCTTTATGGGTAAACGTAGTTGTTTCT
*
49691988 ACACTTCCACACGAAACTTTTTGAATGTATCAAAAGTATCACTCTTGCG
585 ACACTTCCACACGAAACTTTTTGAATGTATCAAAAGTTTCACTCTTGCG
* * * * * *
49692037 ATACATCAGGTATACACGTCTATATTTGGAATAGTCATTGATAAAGGTTACAAAATACTCATAAG
1 ATGCATCAGGTATACATGTCCATATTTGGAATAGTCATTGATAAAGGTTACATAATACTCGTAAC
* * *
49692102 CACCTCTTTTCTAGAGCTTGGAATCAACACTCTACATTGCTTCGTCATATGTTAGTAAGGGATCA
66 CACCTCTTTTCTAGAGCTTGGAATCAACACTCTACATCGCTTCGTCATATGTGAGTAAGGCATCA
* *
49692167 TCTTCCTATTCAGTAGACTCAG-GTTAAAAACACTTCTGTTAGATTGGAAGAACTCCAGCCTATG
131 TCTTCCTATTCAGCAGACTCAGTGTTAAAAACACTTCTGCTAGATTGGAAGAACTCCAGCCTATG
49692231 TGAGTCCGACTTTCTTGCATCTTTATCCAATACGTGGGTCGGACATCCCAAAATCCTAAAATGTA
196 TGAGTCCGACTTTCTTGCATCTTTATCCAATACGTGGGTCGGACATCCCAAAATCCTAAAATGTA
*
49692296 -AATGATTCAACTTCCTACCATACCACAATTTGTATAGAGTTTTCGATTCTACCTTATTTGGCAC
261 TAA-GATTCAACTTCCTACCATGCCACAATTTGTATAGAGTTTTCGATTCTACCTTATTTGGCAC
*
49692360 ATCATTCAGAATATAACAAGTCGTTTGTACAACGTATCCCCAAAAAGAGGTTGACAACTTCAAAT
325 ATCATTCAGAATATAACAAGTCGTTTGTACAACGCATCCCCAAAAAGAGGTTGACAACTTCAAAT
*
49692425 AACTTAATATCGAATATACCATGTCTAACAATGTTCGATTTCTTCTCTTTGCTGTGCCATTCTGT
390 AACTTAATATCGAATATACCATGTCTAACAATGTTCGATTTCTTCTCTCTGCTGTGCCATTCTGT
* *
49692490 TGTGGATTGCCCGACACGGTTAGTTGGGATAGAATCTCATTCTCTATGAGGTGCCTTAAGAA-TA
455 TGTGGAGTGCCCGACACGGTTAATTGGGATAGAATCTCATTCTCTATGAGGTGCCTTAAGAACT-
*
49692554 CATCAGATAAATATGCCCCACCTCGACCAGACCGAAGTGCCTTTATGGGTAAATGTAGTTGTTTC
519 CATCAGATAAATATGCCCCACCTCGACCAGACCGAAGTGCCTTTATGGGTAAACGTAGTTGTTTC
*
49692619 TACACTTCCACACGAAGCTTTTTGAATGTATCAAAAGTTTCACTCTTGCG
584 TACACTTCCACACGAAACTTTTTGAATGTATCAAAAGTTTCACTCTTGCG
49692669 ATGCATCAGGTATACATGTCCATATTTGGAATAGTCATTGATAAAGGTTACATAATACTCGTAAC
1 ATGCATCAGGTATACATGTCCATATTTGGAATAGTCATTGATAAAGGTTACATAATACTCGTAAC
*
49692734 CACCTCTTTTCTAGAGCTTGGAATCAACACTCTACATCGCTTCGTCATATGTGAGCAAGGCATCA
66 CACCTCTTTTCTAGAGCTTGGAATCAACACTCTACATCGCTTCGTCATATGTGAGTAAGGCATCA
*
49692799 TCTTCCTGTTCAGCAG-CTTCAGTGTTAAAAACACTTCTGCTAGATTGGAAGAACTCCAGCCTAT
131 TCTTCCTATTCAGCAGAC-TCAGTGTTAAAAACACTTCTGCTAGATTGGAAGAACTCCAGCCTAT
* * * ** *
49692863 GTGAGTCTGACTTTCTTGCATTTTTATCCAGTACGTCTGTTGGACATCCCAAAATCCTAAAATGT
195 GTGAGTCCGACTTTCTTGCATCTTTATCCAATACGTGGGTCGGACATCCCAAAATCCTAAAATGT
* *
49692928 ATAAGATTCAACTTCCTACCATGCCACAATTTGTATAGAGTTTTCGAGTCTTCCTTATTTGGCAC
260 ATAAGATTCAACTTCCTACCATGCCACAATTTGTATAGAGTTTTCGATTCTACCTTATTTGGCAC
*
49692993 ATCGTTCAGAATA
325 ATCATTCAGAATA
49693006 ATGCATCAGG
Statistics
Matches: 5614, Mismatches: 381, Indels: 53
0.93 0.06 0.01
Matches are distributed among these distances:
627 12 0.00
628 476 0.08
629 209 0.04
630 562 0.10
631 588 0.10
632 1330 0.24
633 2150 0.38
634 284 0.05
635 3 0.00
ACGTcount: A:0.29, C:0.22, G:0.16, T:0.32
Consensus pattern (633 bp):
ATGCATCAGGTATACATGTCCATATTTGGAATAGTCATTGATAAAGGTTACATAATACTCGTAAC
CACCTCTTTTCTAGAGCTTGGAATCAACACTCTACATCGCTTCGTCATATGTGAGTAAGGCATCA
TCTTCCTATTCAGCAGACTCAGTGTTAAAAACACTTCTGCTAGATTGGAAGAACTCCAGCCTATG
TGAGTCCGACTTTCTTGCATCTTTATCCAATACGTGGGTCGGACATCCCAAAATCCTAAAATGTA
TAAGATTCAACTTCCTACCATGCCACAATTTGTATAGAGTTTTCGATTCTACCTTATTTGGCACA
TCATTCAGAATATAACAAGTCGTTTGTACAACGCATCCCCAAAAAGAGGTTGACAACTTCAAATA
ACTTAATATCGAATATACCATGTCTAACAATGTTCGATTTCTTCTCTCTGCTGTGCCATTCTGTT
GTGGAGTGCCCGACACGGTTAATTGGGATAGAATCTCATTCTCTATGAGGTGCCTTAAGAACTCA
TCAGATAAATATGCCCCACCTCGACCAGACCGAAGTGCCTTTATGGGTAAACGTAGTTGTTTCTA
CACTTCCACACGAAACTTTTTGAATGTATCAAAAGTTTCACTCTTGCG
Found at i:49693284 original size:337 final size:337
Alignment explanation
Indices: 49692669--49693342 Score: 1125
Period size: 337 Copynumber: 2.0 Consensus size: 337
49692659 CACTCTTGCG
*
49692669 ATGCATCAGGTATACATGTCCATATTTGGAATAGTCATTGATAAAGGTTACATAATACTCGTAAC
1 ATGCATCAGGTATACATGTCCATATTTGGAATAGTCATTGATAAAGGTTACATAATACTCATAAC
* *
49692734 CACCTCTTTTCTAGAGCTTGGAATCAACACTCTACATCGCTTCGTCATATGTGAGCAAGGCATCA
66 CACCTCTTTTCTAGAGCTTGGAATCAACACTCTAAATCGCTTCGTCATATGTGAGCAAGACATCA
* *
49692799 TCTTCCTGTTCAGCAGCTTCAGTGTTAAAAACACTTCTGCTAGATTGGAAGAACTCCAGCCTATG
131 TCTTCCTATTCAACAGCTTCAGTGTTAAAAACACTTCTGCTAGATTGGAAGAACTCCAGCCTATG
* * * * *
49692864 TGAGTCTGACTTTCTTGCATTTTTATCCAGTACGTCTGTTGGACATCCCAAAATCCTAAAATGTA
196 TGAGTCCGACTTTCTTGCATCTTTATCCAATACGTCGGTGGGACATCCCAAAATCCTAAAATGTA
* *
49692929 TAAGATTCAACTTCCTACCATGCCACAATTTGTATAGAGTTTTCGAGTCTTCCTTATTTGGCACA
261 TAAGATTCAACTTCCTACCATCCCACAATTTGTATAGAGTTTTCGAGTCTACCTTATTTGGCACA
*
49692994 TCGTTCAGAATA
326 TCATTCAGAATA
* *
49693006 ATGCATCAGGTATACATGTCCATATTTGGAGTAGTCATTGATAAATGTTACATAATACTCATAAC
1 ATGCATCAGGTATACATGTCCATATTTGGAATAGTCATTGATAAAGGTTACATAATACTCATAAC
*
49693071 CACCTCTTTTCTAGAGCTTGGAATCAACACTCTAAATCGCTTCGTCATATGTGAGTAAGACATCA
66 CACCTCTTTTCTAGAGCTTGGAATCAACACTCTAAATCGCTTCGTCATATGTGAGCAAGACATCA
* *
49693136 TCTTCCTATTCAACAGAC-TCAGTGTTAAAAACACTTCTGTTGGATTGGAAGAACTCCAGCCTAT
131 TCTTCCTATTCAACAG-CTTCAGTGTTAAAAACACTTCTGCTAGATTGGAAGAACTCCAGCCTAT
* * *
49693200 GTGTGTCCGACTTTCTTGCATCTTTATCCAATATGTGGGTGGGACATCCCAAAATCCTAAAATGT
195 GTGAGTCCGACTTTCTTGCATCTTTATCCAATACGTCGGTGGGACATCCCAAAATCCTAAAATGT
* *
49693265 ATACGATTCAACTTCCTACCATCCCACAATTTGTATAGAGTTTTCGATTCTACCTTATTTGGCAC
260 ATAAGATTCAACTTCCTACCATCCCACAATTTGTATAGAGTTTTCGAGTCTACCTTATTTGGCAC
49693330 ATCATTCAGAATA
325 ATCATTCAGAATA
49693343 TAACATGTCG
Statistics
Matches: 313, Mismatches: 23, Indels: 2
0.93 0.07 0.01
Matches are distributed among these distances:
337 312 1.00
338 1 0.00
ACGTcount: A:0.29, C:0.22, G:0.16, T:0.33
Consensus pattern (337 bp):
ATGCATCAGGTATACATGTCCATATTTGGAATAGTCATTGATAAAGGTTACATAATACTCATAAC
CACCTCTTTTCTAGAGCTTGGAATCAACACTCTAAATCGCTTCGTCATATGTGAGCAAGACATCA
TCTTCCTATTCAACAGCTTCAGTGTTAAAAACACTTCTGCTAGATTGGAAGAACTCCAGCCTATG
TGAGTCCGACTTTCTTGCATCTTTATCCAATACGTCGGTGGGACATCCCAAAATCCTAAAATGTA
TAAGATTCAACTTCCTACCATCCCACAATTTGTATAGAGTTTTCGAGTCTACCTTATTTGGCACA
TCATTCAGAATA
Found at i:49696968 original size:634 final size:633
Alignment explanation
Indices: 49693006--49697772 Score: 7629
Period size: 633 Copynumber: 7.5 Consensus size: 633
49692996 GTTCAGAATA
* * *
49693006 ATGCATCAGGTATACATGTCCATATTTGGAGTAGTCATTGATAAATGTTACATAATACTCATAAC
1 ATGCATCAGGTATACATGTCCATATTTGGAATAGTCATTGATAAAGGTTACATAATACTCGTAAC
* * *
49693071 CACCTCTTTTCTAGAGCTTGGAATCAACACTCTAAATCGCTTCGTCATATGTGAGTAAGACATCA
66 CACCTCTTTTCTAGAGCTTGGAATCAACACTCTACATCGCTTCGTCATATGTGAGCAAGGCATCA
* * *
49693136 TCTTCCTATTCAACAGACTCAGTGTTAAAAACACTTCTGTTGGATTGGAAGAACTCCAGCCTATG
131 TCTTCCTATTCAGCAGACTCAGTGTTAAAAACACTTCTGCTAGATTGGAAGAACTCCAGCCTATG
* * *
49693201 TGTGTCCGACTTTCTTGCATCTTTATCCAATATGTGGGTGGGACATCCCAAAATCCTAAAATGTA
196 TGAGTCCGACTTTCTTGCATCTTTATCCAATACGTGGGTCGGACATCCCAAAATCCTAAAATGTA
*
49693266 TACGATTCAACTTCCTACCATCCCACAATTTGTATAGAGTTTTCGATTCTACCTTATTTGGCACA
261 TACGATTCAACTTCCTACCATGCCACAATTTGTATAGAGTTTTCGATTCTACCTTATTTGGCACA
*
49693331 TCATTCAGAATATAACATGTCGTTTGTACAACGCATCCCCAAAAAGAGGTTGACAACTTCAAATA
326 TCATTCAGAATATAACAAGTCGTTTGTACAACGCATCCCCAAAAAGAGGTTGACAACTTCAAATA
* *
49693396 ACTTAATATCGAATATACCATGTCTAACAATGTTCGATTTCTTCTCTCTGCCGTGCCATTCTTTT
391 ACTTAATATCGAATATACCATGTCTAACAATGTTCGATTTCTTCTCTCTGCTGTGCCATTCTGTT
*
49693461 GTGGAGTGCCCGACATGGTTAATTGGGATAGAATCTCATTCTCTATGAGGTGCCTTAAGAACTCA
456 GTGGAGTGCCCGACACGGTTAATTGGGATAGAATCTCATTCTCTATGAGGTGCCTTAAGAACTCA
* * * *
49693526 TCAGATAAATATGCCCAACCTCGACCAGACCGAAGTGCCTTTATGGGAAAACGTAGTTCTTTTTA
521 TCAGATAAATATGCCCCACCTCGACCAGACCGAAGTGCCTTTATGGGTAAACGTAGTTGTTTCTA
* * * *
49693591 CACTTCCACATGAAACTTTTTCAATTTATCACAAGTTTCACTCTTGCG
586 CACTTCCACACGAAACTTTTTGAATGTATCAAAAGTTTCACTCTTGCG
*
49693639 ATGCATCAGGTATACATGTCCATATTTGGAATAGTCATTTATAAAGGTTACATAATACTCGTAAC
1 ATGCATCAGGTATACATGTCCATATTTGGAATAGTCATTGATAAAGGTTACATAATACTCGTAAC
* * *
49693704 CACCTCTTTTCTAGAACTTCGAATCAACACTCTACACCGCTTCGTCATATGTGAGCAAGGCATCA
66 CACCTCTTTTCTAGAGCTTGGAATCAACACTCTACATCGCTTCGTCATATGTGAGCAAGGCATCA
* * *
49693769 TCTTCCTGTTCAACAGACTCAGTGTTAAAAACACTTCTGCTAGATTGGAAGAACTCTAGCCTATG
131 TCTTCCTATTCAGCAGACTCAGTGTTAAAAACACTTCTGCTAGATTGGAAGAACTCCAGCCTATG
* *
49693834 TGAGTCTGACTTTCTTGCATCGTTATCCAATACGTGGGTCGGACATCCCAAAATCCTAAAATGTA
196 TGAGTCCGACTTTCTTGCATCTTTATCCAATACGTGGGTCGGACATCCCAAAATCCTAAAATGTA
*
49693899 TACGATTCAACTTCCTACCACGCCACAATTTGTATAGAGTTTTCGATTCTACCTTATTTGGCACA
261 TACGATTCAACTTCCTACCATGCCACAATTTGTATAGAGTTTTCGATTCTACCTTATTTGGCACA
* *
49693964 TCATTCAGAATATAACAAGTCATTTGTACAACGCATCCCCAAAAAGAGGTTGACAACTTTAAATA
326 TCATTCAGAATATAACAAGTCGTTTGTACAACGCATCCCCAAAAAGAGGTTGACAACTTCAAATA
* * * * *
49694029 ACTTAATATCGAATAGACCTTGTGTAACAATGATCGATTTCTTCTCTTTGCTGTGCCATT-TGTT
391 ACTTAATATCGAATATACCATGTCTAACAATGTTCGATTTCTTCTCTCTGCTGTGCCATTCTGTT
* **
49694093 GTGGAGTGCCCGACACAGTTTTTTGGGATAGAATCTCATTCTCTATGAGGTGCCTTAAGAACTCA
456 GTGGAGTGCCCGACACGGTTAATTGGGATAGAATCTCATTCTCTATGAGGTGCCTTAAGAACTCA
* * * * *
49694158 TCAGATAAATATGCCCCACGTCGACCAGAACGAAGTTCCTTTATGGGTAGACGTAGTTGTTTGTA
521 TCAGATAAATATGCCCCACCTCGACCAGACCGAAGTGCCTTTATGGGTAAACGTAGTTGTTTCTA
* * * *
49694223 CACTTCCAGACGAAAGTTTTTGAATTTATCAAAAGTTTCAATCTTGCG
586 CACTTCCACACGAAACTTTTTGAATGTATCAAAAGTTTCACTCTTGCG
** * * * *
49694271 ATTAATAAGGTATACATGTCCATATTTGGAATAGTCATTGATAGAGGTTACATAATACTCATAAG
1 ATGCATCAGGTATACATGTCCATATTTGGAATAGTCATTGATAAAGGTTACATAATACTCGTAAC
**
49694336 CACCTCTTTTCTAGAGCTTGGAATCAACACTCTACATCGCTTCGTCATATGTGAGTGAGGCATCA
66 CACCTCTTTTCTAGAGCTTGGAATCAACACTCTACATCGCTTCGTCATATGTGAGCAAGGCATCA
* * *
49694401 TCTTCATATTCAGCAGACTCAGTGTTAAAAACACTTCTGCTAGATTGGAAGAACTCTAGCCTTTG
131 TCTTCCTATTCAGCAGACTCAGTGTTAAAAACACTTCTGCTAGATTGGAAGAACTCCAGCCTATG
* * *
49694466 TGATTCTC-ACTTTCTTCCATCTTTATCCAATACGTGGGTCGGACATCCCAAAATCTTAAAATGT
196 TGAGTC-CGACTTTCTTGCATCTTTATCCAATACGTGGGTCGGACATCCCAAAATCCTAAAATGT
*
49694530 ATACGATTCAACTTCCTACCATGCCACAATTTGTATAGAGTTTTCGATTCTTCCTTATTTGGCAC
260 ATACGATTCAACTTCCTACCATGCCACAATTTGTATAGAGTTTTCGATTCTACCTTATTTGGCAC
* * * *
49694595 ATCGTTCAGAACAAAACAAGTTGTTTGTACAACGCATCCCCAAAAAGAGGTTGACAACTTCAAAT
325 ATCATTCAGAATATAACAAGTCGTTTGTACAACGCATCCCCAAAAAGAGGTTGACAACTTCAAAT
* ** * * * *
49694660 AAATTAATATATAATATACCATGTCTAACAATGATCGATTTCTTCTCCCTACTGTACCATTCTGT
390 AACTTAATATCGAATATACCATGTCTAACAATGTTCGATTTCTTCTCTCTGCTGTGCCATTCTGT
*
49694725 TATGGAGTGCCCGACACGGTTAATTGGGATAGAATCTCATTCTCTATGAGGTGCCTTAAGAACTC
455 TGTGGAGTGCCCGACACGGTTAATTGGGATAGAATCTCATTCTCTATGAGGTGCCTTAAGAACTC
**
49694790 ATCAGATAAATATGCCCCACCTCGACCAGACCGAAGTTTCTTTATGGGTAAACGTAGTTGTTTCT
520 ATCAGATAAATATGCCCCACCTCGACCAGACCGAAGTGCCTTTATGGGTAAACGTAGTTGTTTCT
* *
49694855 ACACTTCCACACGAAACTTTTTCAATTTATCAAAAGTTTCACTCTTGCG
585 ACACTTCCACACGAAACTTTTTGAATGTATCAAAAGTTTCACTCTTGCG
* * * *
49694904 ATACATCAGGTATACACGTCTATATTTGGAATAGTCATTGATAAGGGTTACATAATACTCGTAAC
1 ATGCATCAGGTATACATGTCCATATTTGGAATAGTCATTGATAAAGGTTACATAATACTCGTAAC
* *
49694969 CACCT-TTTTCTAGAGCTTGAAATTAACACTCTACATCGCTTCGTCATATGTGAGCAAGGCATCA
66 CACCTCTTTTCTAGAGCTTGGAATCAACACTCTACATCGCTTCGTCATATGTGAGCAAGGCATCA
* *
49695033 TCTTCTTATTCAGCAGACTCAGTGTTAAAAACACTTCTGTTAGATTGGAAGAACTCCAGCCTATG
131 TCTTCCTATTCAGCAGACTCAGTGTTAAAAACACTTCTGCTAGATTGGAAGAACTCCAGCCTATG
* *
49695098 TGAGTCCTACTTTCTTGCATCTTTATCCAATACGTGGCTCGGACATCCCAAAATCCTAAAATGTA
196 TGAGTCCGACTTTCTTGCATCTTTATCCAATACGTGGGTCGGACATCCCAAAATCCTAAAATGTA
49695163 TACGATTCAACTTCCTACCATGCCACAATTTGTATAGAGTTTTCGATTCTACCTTATTTGGCACA
261 TACGATTCAACTTCCTACCATGCCACAATTTGTATAGAGTTTTCGATTCTACCTTATTTGGCACA
*
49695228 TCATTCAGAATATAACAAGTCATTTGTACAACGCATCCCCAAAAAGAGGTTGACAACTTCAAATA
326 TCATTCAGAATATAACAAGTCGTTTGTACAACGCATCCCCAAAAAGAGGTTGACAACTTCAAATA
* * * *
49695293 ACTTAATATCGAATATACCATGTCTAACAATGTTCAATTTCTACTCTCTGCTATGCCATTTTGTT
391 ACTTAATATCGAATATACCATGTCTAACAATGTTCGATTTCTTCTCTCTGCTGTGCCATTCTGTT
* * * * *
49695358 GTGGGGTGCCCGCCATGGTTAATTAGGATAGAATCTCATTCTCTTTGAGGTGCCTTAAGAACTCA
456 GTGGAGTGCCCGACACGGTTAATTGGGATAGAATCTCATTCTCTATGAGGTGCCTTAAGAACTCA
* *
49695423 TCAGATAAATATGCCCCACCTCGCCCAGACCGAAGTGCCTTTATGGGTAAACATAGTTGTTTCTA
521 TCAGATAAATATGCCCCACCTCGACCAGACCGAAGTGCCTTTATGGGTAAACGTAGTTGTTTCTA
* * *
49695488 CACTTCCGCACGAAACTTTTTGAATGTATCAAAAGTATCACTCTTGTG
586 CACTTCCACACGAAACTTTTTGAATGTATCAAAAGTTTCACTCTTGCG
* * *
49695536 ATGCATTAGGTATACATGTCCATATTTGGAATAGTCATTGATAAATGTTACATAATACTCGTAAG
1 ATGCATCAGGTATACATGTCCATATTTGGAATAGTCATTGATAAAGGTTACATAATACTCGTAAC
* *
49695601 CACCTCTTTTCTAGAGCTTGGAATCAACACTTTACATCGCTTCGTCATATGTGAGCAAGGCATAA
66 CACCTCTTTTCTAGAGCTTGGAATCAACACTCTACATCGCTTCGTCATATGTGAGCAAGGCATCA
* * *
49695666 TCTTCTTGTTCAGCAGACTCAGTGTTAAAAACACTTCTGCTAGATTGGAAGAACTCCAACCTATG
131 TCTTCCTATTCAGCAGACTCAGTGTTAAAAACACTTCTGCTAGATTGGAAGAACTCCAGCCTATG
*
49695731 TGAGTCTGACTTTCTTGCATCTTTATCCAATACGTGGGTCGGACATCCCAAAATCCTAAAATGTA
196 TGAGTCCGACTTTCTTGCATCTTTATCCAATACGTGGGTCGGACATCCCAAAATCCTAAAATGTA
* * *
49695796 TAAGATCCAACTTCCTACCATGCCACAATTTGTATAGAGTTTTCGATTCTTCCTTATTTGGCACA
261 TACGATTCAACTTCCTACCATGCCACAATTTGTATAGAGTTTTCGATTCTACCTTATTTGGCACA
* * * *
49695861 TCGTTCAAAATATAACAAGTCGTTTGTACAACGTATCCCCAAAAAGAGGTTGACAACTTTAAATA
326 TCATTCAGAATATAACAAGTCGTTTGTACAACGCATCCCCAAAAAGAGGTTGACAACTTCAAATA
* * * *
49695926 ACTTAATATCGAATAGACCATGTCTAACAATGATCGATTTCTTCTCTTTGTTGTGCCATTCTGTT
391 ACTTAATATCGAATATACCATGTCTAACAATGTTCGATTTCTTCTCTCTGCTGTGCCATTCTGTT
* * *
49695991 GTAGAGTGCCCGACACGGTTATTTGGGATAGAATCTCATTCTCTATAAGGTG-CTTAAAGAACTC
456 GTGGAGTGCCCGACACGGTTAATTGGGATAGAATCTCATTCTCTATGAGGTGCCTT-AAGAACTC
* * * * * * *
49696055 ATCAGACAAATATGCACCACCTCGACCAGAACGAAGTTCGTTTATAGGTAAACGTAGTTGTTTGT
520 ATCAGATAAATATGCCCCACCTCGACCAGACCGAAGTGCCTTTATGGGTAAACGTAGTTGTTTCT
* * *
49696120 ACACTTCCACATGAAACTTTTTGAATGTATCAAAAGTATCACTCTTGTG
585 ACACTTCCACACGAAACTTTTTGAATGTATCAAAAGTTTCACTCTTGCG
* * * *
49696169 ATGCATTAGGTATACATGTCCATATTTGGAATAGTAATTGATAAAGGTTACATAATCCTCGTAAG
1 ATGCATCAGGTATACATGTCCATATTTGGAATAGTCATTGATAAAGGTTACATAATACTCGTAAC
* * *
49696234 CACCTCTTTTCTAGAGCTTGGAATCAACACTCTACATCGCTTCGTCATATGTGAGTAAGGGATTA
66 CACCTCTTTTCTAGAGCTTGGAATCAACACTCTACATCGCTTCGTCATATGTGAGCAAGGCATCA
* * *
49696299 TCTTCCTATTCAGCAGACTCAGCGTTAAAAACACTTCCGTTAGATTGGAAGAACTCCAGCCTATG
131 TCTTCCTATTCAGCAGACTCAGTGTTAAAAACACTTCTGCTAGATTGGAAGAACTCCAGCCTATG
* * * *
49696364 TCAGTCCGACTTTCTTGCATCTTTATCCAATACGTGGTTTGGACATCCCAAAATCCTAAGATGTA
196 TGAGTCCGACTTTCTTGCATCTTTATCCAATACGTGGGTCGGACATCCCAAAATCCTAAAATGTA
* *
49696429 TATGATTCAACTTCCTACCATGCCACAATTTGTATAGAGTTTTCGATTCTACATTATTTGGCACA
261 TACGATTCAACTTCCTACCATGCCACAATTTGTATAGAGTTTTCGATTCTACCTTATTTGGCACA
*
49696494 TCATTCAGAATATAACAAGTCGTTTGTACAACGTATCCCCAAAAAGAGGTTGACAACTTCAAATA
326 TCATTCAGAATATAACAAGTCGTTTGTACAACGCATCCCCAAAAAGAGGTTGACAACTTCAAATA
* * * * *
49696559 ACTTAATATCGTATATACCATGTCTAACAGTGTTCAATTTCTTCTCTCTACTTTGCCATTCTGTT
391 ACTTAATATCGAATATACCATGTCTAACAATGTTCGATTTCTTCTCTCTGCTGTGCCATTCTGTT
* *
49696624 GTGGAGTGCCCGATACGGTTTAATTGGGATAGAATCTCATTCTCTATGAGGTACCTTAAGAACTC
456 GTGGAGTGCCCGACACGG-TTAATTGGGATAGAATCTCATTCTCTATGAGGTGCCTTAAGAACTC
* *
49696689 ATCAGATAAATATGCCCCACCTCGACCAGACCGAAGTCCCTTTATGGGTAAACGTAATTGTTTCT
520 ATCAGATAAATATGCCCCACCTCGACCAGACCGAAGTGCCTTTATGGGTAAACGTAGTTGTTTCT
*
49696754 ACACTTCCACACGAAACTTTTTGAATGTATCAAAAGTATCACTCTTGCG
585 ACACTTCCACACGAAACTTTTTGAATGTATCAAAAGTTTCACTCTTGCG
* * * * * *
49696803 ATACATCAGGTATACACGTCTATATTTGGAATAGTCATTGATAAAGGTTACAAAATACTCATAAG
1 ATGCATCAGGTATACATGTCCATATTTGGAATAGTCATTGATAAAGGTTACATAATACTCGTAAC
* * * *
49696868 CACCTCTTTTCTAGAGCTTGGAATCAACACTCTACATTGCTTCGTCATATGTTAGTAAGGGATCA
66 CACCTCTTTTCTAGAGCTTGGAATCAACACTCTACATCGCTTCGTCATATGTGAGCAAGGCATCA
* *
49696933 TCTTCCTATTCAGCAGACTCAGGGTTAAAAACACTTCTGTTAGATTGGAAGAACTCCAGCCTATG
131 TCTTCCTATTCAGCAGACTCAGTGTTAAAAACACTTCTGCTAGATTGGAAGAACTCCAGCCTATG
49696998 TGAGTCCGACTTTCTTGCATCTTTATCCAATACGTGGGTCGGACATCCCAAAATCCTAAAATGTA
196 TGAGTCCGACTTTCTTGCATCTTTATCCAATACGTGGGTCGGACATCCCAAAATCCTAAAATGTA
* * *
49697063 AATGATTCAACTTCCTACCATACCACAATTTGTATAGAGTTTTCGATTCTACCTTATTTGGCACA
261 TACGATTCAACTTCCTACCATGCCACAATTTGTATAGAGTTTTCGATTCTACCTTATTTGGCACA
*
49697128 TCATTCAGAATATAACAAGTCGTTTGTACAACGTATCCCCAAAAAGAGGTTGACAACTTCAAATA
326 TCATTCAGAATATAACAAGTCGTTTGTACAACGCATCCCCAAAAAGAGGTTGACAACTTCAAATA
*
49697193 ACTTAATATCGAATATACCATGTCTAACAATGTTCGATTTCTTCTCTTTGCTGTGCCATTCTGTT
391 ACTTAATATCGAATATACCATGTCTAACAATGTTCGATTTCTTCTCTCTGCTGTGCCATTCTGTT
* *
49697258 GTGGATTGCCCGACACGGTTAGTTGGGATAGAATCTCATTCTCTATGAGGTGCCTTAAGAA-TGC
456 GTGGAGTGCCCGACACGGTTAATTGGGATAGAATCTCATTCTCTATGAGGTGCCTTAAGAACT-C
*
49697322 ATCAGATAAATATGCCCCACCTCGACCAGACCGAAGTGCCTTTATGGGTAAATGTAGTTGTTTCT
520 ATCAGATAAATATGCCCCACCTCGACCAGACCGAAGTGCCTTTATGGGTAAACGTAGTTGTTTCT
*
49697387 ACACTTCCACACGAAGCTTTTTGAATGTATCAAAAGTTTCACTCTTGCG
585 ACACTTCCACACGAAACTTTTTGAATGTATCAAAAGTTTCACTCTTGCG
49697436 ATGCATCAGGTATACATGTCCATATTTGGAATAGTCATTGATAAAGGTTACATAATACTCGTAAC
1 ATGCATCAGGTATACATGTCCATATTTGGAATAGTCATTGATAAAGGTTACATAATACTCGTAAC
49697501 CACCTCTTTTCTAGAGCTTGGAATCAACACTCTACATCGCTTCGTCATATGTGAGCAAGGCATCA
66 CACCTCTTTTCTAGAGCTTGGAATCAACACTCTACATCGCTTCGTCATATGTGAGCAAGGCATCA
*
49697566 TCTTCCTGTTCAGCAG-CTTCAGTGTTAAAAACACTTCTGCTAGATTGGAAGAACTCCAGCCTAT
131 TCTTCCTATTCAGCAGAC-TCAGTGTTAAAAACACTTCTGCTAGATTGGAAGAACTCCAGCCTAT
* * * ** *
49697630 GTGAGTCTGACTTTCTTGCATTTTTATCCAGTACGTCTGTTGGACATCCCAAAATCCTAAAATGT
195 GTGAGTCCGACTTTCTTGCATCTTTATCCAATACGTGGGTCGGACATCCCAAAATCCTAAAATGT
* * *
49697695 ATAAGATTCAACTTCCTACCATGCCACAATTTGTATAGAGTTTTCGAGTCTTCCTTATTTGGCAC
260 ATACGATTCAACTTCCTACCATGCCACAATTTGTATAGAGTTTTCGATTCTACCTTATTTGGCAC
*
49697760 ATCGTTCAGAATA
325 ATCATTCAGAATA
49697773 ATGCATCAGG
Statistics
Matches: 3810, Mismatches: 315, Indels: 18
0.92 0.08 0.00
Matches are distributed among these distances:
631 1 0.00
632 1157 0.30
633 2061 0.54
634 588 0.15
635 3 0.00
ACGTcount: A:0.30, C:0.22, G:0.16, T:0.33
Consensus pattern (633 bp):
ATGCATCAGGTATACATGTCCATATTTGGAATAGTCATTGATAAAGGTTACATAATACTCGTAAC
CACCTCTTTTCTAGAGCTTGGAATCAACACTCTACATCGCTTCGTCATATGTGAGCAAGGCATCA
TCTTCCTATTCAGCAGACTCAGTGTTAAAAACACTTCTGCTAGATTGGAAGAACTCCAGCCTATG
TGAGTCCGACTTTCTTGCATCTTTATCCAATACGTGGGTCGGACATCCCAAAATCCTAAAATGTA
TACGATTCAACTTCCTACCATGCCACAATTTGTATAGAGTTTTCGATTCTACCTTATTTGGCACA
TCATTCAGAATATAACAAGTCGTTTGTACAACGCATCCCCAAAAAGAGGTTGACAACTTCAAATA
ACTTAATATCGAATATACCATGTCTAACAATGTTCGATTTCTTCTCTCTGCTGTGCCATTCTGTT
GTGGAGTGCCCGACACGGTTAATTGGGATAGAATCTCATTCTCTATGAGGTGCCTTAAGAACTCA
TCAGATAAATATGCCCCACCTCGACCAGACCGAAGTGCCTTTATGGGTAAACGTAGTTGTTTCTA
CACTTCCACACGAAACTTTTTGAATGTATCAAAAGTTTCACTCTTGCG
Found at i:49698051 original size:337 final size:337
Alignment explanation
Indices: 49697436--49698109 Score: 1125
Period size: 337 Copynumber: 2.0 Consensus size: 337
49697426 CACTCTTGCG
*
49697436 ATGCATCAGGTATACATGTCCATATTTGGAATAGTCATTGATAAAGGTTACATAATACTCGTAAC
1 ATGCATCAGGTATACATGTCCATATTTGGAATAGTCATTGATAAAGGTTACATAATACTCATAAC
* *
49697501 CACCTCTTTTCTAGAGCTTGGAATCAACACTCTACATCGCTTCGTCATATGTGAGCAAGGCATCA
66 CACCTCTTTTCTAGAGCTTGGAATCAACACTCTAAATCGCTTCGTCATATGTGAGCAAGACATCA
* *
49697566 TCTTCCTGTTCAGCAGCTTCAGTGTTAAAAACACTTCTGCTAGATTGGAAGAACTCCAGCCTATG
131 TCTTCCTATTCAACAGCTTCAGTGTTAAAAACACTTCTGCTAGATTGGAAGAACTCCAGCCTATG
* * * * *
49697631 TGAGTCTGACTTTCTTGCATTTTTATCCAGTACGTCTGTTGGACATCCCAAAATCCTAAAATGTA
196 TGAGTCCGACTTTCTTGCATCTTTATCCAATACGTCGGTGGGACATCCCAAAATCCTAAAATGTA
* *
49697696 TAAGATTCAACTTCCTACCATGCCACAATTTGTATAGAGTTTTCGAGTCTTCCTTATTTGGCACA
261 TAAGATTCAACTTCCTACCATCCCACAATTTGTATAGAGTTTTCGAGTCTACCTTATTTGGCACA
*
49697761 TCGTTCAGAATA
326 TCATTCAGAATA
* *
49697773 ATGCATCAGGTATACATGTCCATATTTGGAGTAGTCATTGATAAATGTTACATAATACTCATAAC
1 ATGCATCAGGTATACATGTCCATATTTGGAATAGTCATTGATAAAGGTTACATAATACTCATAAC
*
49697838 CACCTCTTTTCTAGAGCTTGGAATCAACACTCTAAATCGCTTCGTCATATGTGAGTAAGACATCA
66 CACCTCTTTTCTAGAGCTTGGAATCAACACTCTAAATCGCTTCGTCATATGTGAGCAAGACATCA
* *
49697903 TCTTCCTATTCAACAGAC-TCAGTGTTAAAAACACTTCTGTTGGATTGGAAGAACTCCAGCCTAT
131 TCTTCCTATTCAACAG-CTTCAGTGTTAAAAACACTTCTGCTAGATTGGAAGAACTCCAGCCTAT
* * *
49697967 GTGTGTCCGACTTTCTTGCATCTTTATCCAATATGTGGGTGGGACATCCCAAAATCCTAAAATGT
195 GTGAGTCCGACTTTCTTGCATCTTTATCCAATACGTCGGTGGGACATCCCAAAATCCTAAAATGT
* *
49698032 ATACGATTCAACTTCCTACCATCCCACAATTTGTATAGAGTTTTCGATTCTACCTTATTTGGCAC
260 ATAAGATTCAACTTCCTACCATCCCACAATTTGTATAGAGTTTTCGAGTCTACCTTATTTGGCAC
49698097 ATCATTCAGAATA
325 ATCATTCAGAATA
49698110 TAACATGTCG
Statistics
Matches: 313, Mismatches: 23, Indels: 2
0.93 0.07 0.01
Matches are distributed among these distances:
337 312 1.00
338 1 0.00
ACGTcount: A:0.29, C:0.22, G:0.16, T:0.33
Consensus pattern (337 bp):
ATGCATCAGGTATACATGTCCATATTTGGAATAGTCATTGATAAAGGTTACATAATACTCATAAC
CACCTCTTTTCTAGAGCTTGGAATCAACACTCTAAATCGCTTCGTCATATGTGAGCAAGACATCA
TCTTCCTATTCAACAGCTTCAGTGTTAAAAACACTTCTGCTAGATTGGAAGAACTCCAGCCTATG
TGAGTCCGACTTTCTTGCATCTTTATCCAATACGTCGGTGGGACATCCCAAAATCCTAAAATGTA
TAAGATTCAACTTCCTACCATCCCACAATTTGTATAGAGTTTTCGAGTCTACCTTATTTGGCACA
TCATTCAGAATA
Found at i:49698693 original size:970 final size:970
Alignment explanation
Indices: 49696806--49698742 Score: 3356
Period size: 970 Copynumber: 2.0 Consensus size: 970
49696796 TCTTGCGATA
* *
49696806 CATCAGGTATACACGTCTATATTTGGAATAGTCATTGATAAAGGTTACAAAATACTCATAAGCAC
1 CATCAGGTATACACGTCCATATTTGGAATAGTCATTGATAAAGGTTACAAAATACTCATAACCAC
* * * **
49696871 CTCTTTTCTAGAGCTTGGAATCAACACTCTACATTGCTTCGTCATATGTTAGTAAGGGATCATCT
66 CTCTTTTCTAGAGCTTGGAATCAACACTCTAAATCGCTTCGTCATATGTGAGTAAGACATCATCT
*
49696936 TCCTATTCAGCAGACTCAGGGTTAAAAACACTTCTGTTAGATTGGAAGAACTCCAGCCTATGTGA
131 TCCTATTCAACAGACTCAGGGTTAAAAACACTTCTGTTAGATTGGAAGAACTCCAGCCTATGTGA
*
49697001 GTCCGACTTTCTTGCATCTTTATCCAATACGTGGGTCGGACATCCCAAAATCCTAAAATGTAAAT
196 GTCCGACTTTCTTGCATCTTTATCCAATACGTGGGTCGGACATCCCAAAATCCTAAAATGTAAAC
49697066 GATTCAACTTCCTACCATACCACAATTTGTATAGAGTTTTCGATTCTACCTTATTTGGCACATCA
261 GATTCAACTTCCTACCATACCACAATTTGTATAGAGTTTTCGATTCTACCTTATTTGGCACATCA
*
49697131 TTCAGAATATAACAAGTCGTTTGTACAACGTATCCCCAAAAAGAGGTTGACAACTTCAAATAACT
326 TTCAGAATATAACAAGTCGTTTGTACAACGCATCCCCAAAAAGAGGTTGACAACTTCAAATAACT
* *
49697196 TAATATCGAATATACCATGTCTAACAATGTTCGATTTCTTCTCTTTGCTGTGCCATTCTGTTGTG
391 TAATATCGAATATACCATGTCTAACAATGTTCGATTTCTTCTCTCTGCCGTGCCATTCTGTTGTG
* *
49697261 GATTGCCCGACACGGTTAGTTGGGATAGAATCTCATTCTCTATGAGGTGCCTTAAGAATGCATCA
456 GAGTGCCCGACACGGTTAATTGGGATAGAATCTCATTCTCTATGAGGTGCCTTAAGAATGCATCA
* * *
49697326 GATAAATATGCCCCACCTCGACCAGACCGAAGTGCCTTTATGGGTAAATGTAGTTGTTTCTACAC
521 GATAAATATGCCCAACCTCGACCAGACCGAAGTGCCTTTATGGGTAAACGTAGTTCTTTCTACAC
* *
49697391 TTCCACACGAAGCTTTTTGAATGTATCAAAAGTTTCACTCTTGCGATGCATCAGGTATACATGTC
586 TTCCACACGAAACTTTTTCAATGTATCAAAAGTTTCACTCTTGCGATGCATCAGGTATACATGTC
* *
49697456 CATATTTGGAATAGTCATTGATAAAGGTTACATAATACTCGTAACCACCTCTTTTCTAGAGCTTG
651 CATATTTGGAATAGTCATTGATAAAGGTTACATAATACTCGTAACCACCTCTTTTCTAGAACTTC
* *
49697521 GAATCAACACTCTACATCGCTTCGTCATATGTGAGCAAGGCATCATCTTCCTGTTCAGCAGCTTC
716 GAATCAACACTCTACACCGCTTCGTCATATGTGAGCAAGGCATCATCTTCCTGTTCAACAGCTTC
49697586 AGTGTTAAAAACACTTCTGCTAGATTGGAAGAACTCCAGCCTATGTGAGTCTGACTTTCTTGCAT
781 AGTGTTAAAAACACTTCTGCTAGATTGGAAGAACTCCAGCCTATGTGAGTCTGACTTTCTTGCAT
** * * *
49697651 TTTTATCCAGTACGTCTGTTGGACATCCCAAAATCCTAAAATGTATAAGATTCAACTTCCTACCA
846 CGTTATCCAATACGTCGGTCGGACATCCCAAAATCCTAAAATGTATAAGATTCAACTTCCTACCA
* * *
49697716 TGCCACAATTTGTATAGAGTTTTCGAGTCTTCCTTATTTGGCACATCGTTCAGAATAATG
911 CGCCACAATTTGTATAGAGTTTTCGAGTCTACCTTATTTGGCACATCATTCAGAATAATG
* * * *
49697776 CATCAGGTATACATGTCCATATTTGGAGTAGTCATTGATAAATGTTACATAATACTCATAACCAC
1 CATCAGGTATACACGTCCATATTTGGAATAGTCATTGATAAAGGTTACAAAATACTCATAACCAC
49697841 CTCTTTTCTAGAGCTTGGAATCAACACTCTAAATCGCTTCGTCATATGTGAGTAAGACATCATCT
66 CTCTTTTCTAGAGCTTGGAATCAACACTCTAAATCGCTTCGTCATATGTGAGTAAGACATCATCT
* * *
49697906 TCCTATTCAACAGACTCAGTGTTAAAAACACTTCTGTTGGATTGGAAGAACTCCAGCCTATGTGT
131 TCCTATTCAACAGACTCAGGGTTAAAAACACTTCTGTTAGATTGGAAGAACTCCAGCCTATGTGA
* * *
49697971 GTCCGACTTTCTTGCATCTTTATCCAATATGTGGGTGGGACATCCCAAAATCCTAAAATGTATAC
196 GTCCGACTTTCTTGCATCTTTATCCAATACGTGGGTCGGACATCCCAAAATCCTAAAATGTAAAC
*
49698036 GATTCAACTTCCTACCATCCCACAATTTGTATAGAGTTTTCGATTCTACCTTATTTGGCACATCA
261 GATTCAACTTCCTACCATACCACAATTTGTATAGAGTTTTCGATTCTACCTTATTTGGCACATCA
*
49698101 TTCAGAATATAACATGTCGTTTGTACAACGCATCCCCAAAAAGAGGTTGACAACTTCAAATAACT
326 TTCAGAATATAACAAGTCGTTTGTACAACGCATCCCCAAAAAGAGGTTGACAACTTCAAATAACT
*
49698166 TAATATCGAATATACCATGTCTAACAATGTTCGATTTCTTCTCTCTGCCGTGCCATTCTTTTGTG
391 TAATATCGAATATACCATGTCTAACAATGTTCGATTTCTTCTCTCTGCCGTGCCATTCTGTTGTG
*
49698231 GAGTGCCCGACATGGTTAATTGGGATAGAATCTCATTCTCTATGAGGTGCCTTAAGAACT-CATC
456 GAGTGCCCGACACGGTTAATTGGGATAGAATCTCATTCTCTATGAGGTGCCTTAAGAA-TGCATC
*
49698295 AGATAAATATGCCCAACCTCGACCAGACCGAAGTGCCTTTATGGGTAAACGTAGTTCTTTTTACA
520 AGATAAATATGCCCAACCTCGACCAGACCGAAGTGCCTTTATGGGTAAACGTAGTTCTTTCTACA
* * *
49698360 CTTCCACATGAAACTTTTTCAATTTATCACAAGTTTCACTCTTGCGATGCATCAGGTATACATGT
585 CTTCCACACGAAACTTTTTCAATGTATCAAAAGTTTCACTCTTGCGATGCATCAGGTATACATGT
*
49698425 CCATATTTGGAATAGTCATTTATAAAGGTTACATAATACTCGTAACCACCTCTTTTCTAGAACTT
650 CCATATTTGGAATAGTCATTGATAAAGGTTACATAATACTCGTAACCACCTCTTTTCTAGAACTT
49698490 CGAATCAACACTCTACACCGCTTCGTCATATGTGAGCAAGGCATCATCTTCCTGTTCAACAGAC-
715 CGAATCAACACTCTACACCGCTTCGTCATATGTGAGCAAGGCATCATCTTCCTGTTCAACAG-CT
*
49698554 TCAGTGTTAAAAACACTTCTGCTAGATTGGAAGAACTCTAGCCTATGTGAGTCTGACTTTCTTGC
779 TCAGTGTTAAAAACACTTCTGCTAGATTGGAAGAACTCCAGCCTATGTGAGTCTGACTTTCTTGC
* *
49698619 ATCGTTATCCAATACGTGGGTCGGACATCCCAAAATCCTAAAATGTATACGATTCAACTTCCTAC
844 ATCGTTATCCAATACGTCGGTCGGACATCCCAAAATCCTAAAATGTATAAGATTCAACTTCCTAC
*
49698684 CACGCCACAATTTGTATAGAGTTTTCGATTCTACCTTATTTGGCACATCATTCAGAATA
909 CACGCCACAATTTGTATAGAGTTTTCGAGTCTACCTTATTTGGCACATCATTCAGAATA
49698743 TAACAAGTCA
Statistics
Matches: 911, Mismatches: 54, Indels: 4
0.94 0.06 0.00
Matches are distributed among these distances:
970 909 1.00
971 2 0.00
ACGTcount: A:0.29, C:0.22, G:0.16, T:0.33
Consensus pattern (970 bp):
CATCAGGTATACACGTCCATATTTGGAATAGTCATTGATAAAGGTTACAAAATACTCATAACCAC
CTCTTTTCTAGAGCTTGGAATCAACACTCTAAATCGCTTCGTCATATGTGAGTAAGACATCATCT
TCCTATTCAACAGACTCAGGGTTAAAAACACTTCTGTTAGATTGGAAGAACTCCAGCCTATGTGA
GTCCGACTTTCTTGCATCTTTATCCAATACGTGGGTCGGACATCCCAAAATCCTAAAATGTAAAC
GATTCAACTTCCTACCATACCACAATTTGTATAGAGTTTTCGATTCTACCTTATTTGGCACATCA
TTCAGAATATAACAAGTCGTTTGTACAACGCATCCCCAAAAAGAGGTTGACAACTTCAAATAACT
TAATATCGAATATACCATGTCTAACAATGTTCGATTTCTTCTCTCTGCCGTGCCATTCTGTTGTG
GAGTGCCCGACACGGTTAATTGGGATAGAATCTCATTCTCTATGAGGTGCCTTAAGAATGCATCA
GATAAATATGCCCAACCTCGACCAGACCGAAGTGCCTTTATGGGTAAACGTAGTTCTTTCTACAC
TTCCACACGAAACTTTTTCAATGTATCAAAAGTTTCACTCTTGCGATGCATCAGGTATACATGTC
CATATTTGGAATAGTCATTGATAAAGGTTACATAATACTCGTAACCACCTCTTTTCTAGAACTTC
GAATCAACACTCTACACCGCTTCGTCATATGTGAGCAAGGCATCATCTTCCTGTTCAACAGCTTC
AGTGTTAAAAACACTTCTGCTAGATTGGAAGAACTCCAGCCTATGTGAGTCTGACTTTCTTGCAT
CGTTATCCAATACGTCGGTCGGACATCCCAAAATCCTAAAATGTATAAGATTCAACTTCCTACCA
CGCCACAATTTGTATAGAGTTTTCGAGTCTACCTTATTTGGCACATCATTCAGAATAATG
Found at i:49698982 original size:633 final size:633
Alignment explanation
Indices: 49697773--49700637 Score: 4626
Period size: 633 Copynumber: 4.5 Consensus size: 633
49697763 GTTCAGAATA
* *
49697773 ATGCATCAGGTATACATGTCCATATTTGGAGTAGTCATTGATAAATGTTACATAATACTCATAAC
1 ATGCATCAGGTATACATGTCCATATTTGGAATAGTCATTGATAAAGGTTACATAATACTCATAAC
* * *
49697838 CACCTCTTTTCTAGAGCTTGGAATCAACACTCTAAATCGCTTCGTCATATGTGAGTAAGACATCA
66 CACCTCTTTTCTAGAGCTTGGAATCAACACTCTACATCGCTTCGTCATATGTGAGCAAGGCATCA
* * *
49697903 TCTTCCTATTCAACAGACTCAGTGTTAAAAACACTTCTGTTGGATTGGAAGAACTCCAGCCTATG
131 TCTTCCTGTTCAGCAGACTCAGTGTTAAAAACACTTCTGTTAGATTGGAAGAACTCCAGCCTATG
* * *
49697968 TGTGTCCGACTTTCTTGCATCTTTATCCAATATGTGGGTGGGACATCCCAAAATCCTAAAATGTA
196 TGAGTCCGACTTTCTTGCATCTTTATCCAATACGTGGGTCGGACATCCCAAAATCCTAAAATGTA
49698033 TACGATTCAACTTCCTACCATC-CCACAATTTGTATAGAGTTTTCGATTCTACCTTATTTGGCAC
261 TACGATTCAACTTCCTACCA-CGCCACAATTTGTATAGAGTTTTCGATTCTACCTTATTTGGCAC
* *
49698097 ATCATTCAGAATATAACATGTCGTTTGTACAACGCATCCCCAAAAAGAGGTTGACAACTTCAAAT
325 ATCATTCAGAATATAACAAGTCATTTGTACAACGCATCCCCAAAAAGAGGTTGACAACTTCAAAT
* *
49698162 AACTTAATATCGAATATACCATGTCTAACAATGTTCGATTTCTTCTCTCTGCCGTGCCATTCTTT
390 AACTTAATATCGAATAGACCATGTCTAACAATGATCGATTTCTTCTCTCTGCCGTGCCATTCTTT
*
49698227 TGTGGAGTGCCCGACATGGTTAATTGGGATAGAATCTCATTCTCTATGAGGTGCCTTAAGAACTC
455 TGTGGAGTGCCCGACACGGTTAATTGGGATAGAATCTCATTCTCTATGAGGTGCCTTAAGAACTC
* * *
49698292 ATCAGATAAATATGCCCAACCTCGACCAGACCGAAGTGCCTTTATGGGTAAACGTAGTTCTTTTT
520 ATCAGATAAATATGCCCCACCTCGACCAGAACGAAGTGCCTTTATGGGTAAACGTAGTTCTTTGT
* * *
49698357 ACACTTCCACATGAAACTTTTTCAATTTATCACAAGTTTCACTCTTGCG
585 ACACTTCCACACGAAACTTTTTCAATTTATCAAAAGTTTCAATCTTGCG
* *
49698406 ATGCATCAGGTATACATGTCCATATTTGGAATAGTCATTTATAAAGGTTACATAATACTCGTAAC
1 ATGCATCAGGTATACATGTCCATATTTGGAATAGTCATTGATAAAGGTTACATAATACTCATAAC
* * *
49698471 CACCTCTTTTCTAGAACTTCGAATCAACACTCTACACCGCTTCGTCATATGTGAGCAAGGCATCA
66 CACCTCTTTTCTAGAGCTTGGAATCAACACTCTACATCGCTTCGTCATATGTGAGCAAGGCATCA
* * *
49698536 TCTTCCTGTTCAACAGACTCAGTGTTAAAAACACTTCTGCTAGATTGGAAGAACTCTAGCCTATG
131 TCTTCCTGTTCAGCAGACTCAGTGTTAAAAACACTTCTGTTAGATTGGAAGAACTCCAGCCTATG
* *
49698601 TGAGTCTGACTTTCTTGCATCGTTATCCAATACGTGGGTCGGACATCCCAAAATCCTAAAATGTA
196 TGAGTCCGACTTTCTTGCATCTTTATCCAATACGTGGGTCGGACATCCCAAAATCCTAAAATGTA
49698666 TACGATTCAACTTCCTACCACGCCACAATTTGTATAGAGTTTTCGATTCTACCTTATTTGGCACA
261 TACGATTCAACTTCCTACCACGCCACAATTTGTATAGAGTTTTCGATTCTACCTTATTTGGCACA
*
49698731 TCATTCAGAATATAACAAGTCATTTGTACAACGCATCCCCAAAAAGAGGTTGACAACTTTAAATA
326 TCATTCAGAATATAACAAGTCATTTGTACAACGCATCCCCAAAAAGAGGTTGACAACTTCAAATA
* * * *
49698796 ACTTAATATCGAATAGACCTTGTGTAACAATGATCGATTTCTTCTCTTTGCTGTGCCATT-TTGT
391 ACTTAATATCGAATAGACCATGTCTAACAATGATCGATTTCTTCTCTCTGCCGTGCCATTCTT-T
* **
49698860 TGTGGAGTGCCCGACACAGTTTTTTGGGATAGAATCTCATTCTCTATGAGGTGCCTTAAGAACTC
455 TGTGGAGTGCCCGACACGGTTAATTGGGATAGAATCTCATTCTCTATGAGGTGCCTTAAGAACTC
* * * *
49698925 ATCAGATAAATATGCCCCACGTCGACCAGAACGAAGTTCCTTTATGGGTAGACGTAGTTGTTTGT
520 ATCAGATAAATATGCCCCACCTCGACCAGAACGAAGTGCCTTTATGGGTAAACGTAGTTCTTTGT
* * *
49698990 ACACTTCCAGACGAAAGTTTTTGAATTTATCAAAAGTTTCAATCTTGCG
585 ACACTTCCACACGAAACTTTTTCAATTTATCAAAAGTTTCAATCTTGCG
** * * *
49699039 ATTAATAAGGTATACATGTCCATATTTGGAATAGTCATTGATAGAGGTTACATAATACTCATAAG
1 ATGCATCAGGTATACATGTCCATATTTGGAATAGTCATTGATAAAGGTTACATAATACTCATAAC
* *
49699104 CACCTCTTTTCTAGAGCTTGGAATCAACACTCTACATCGCTTCGTAATATATGAGCAAGGCATCA
66 CACCTCTTTTCTAGAGCTTGGAATCAACACTCTACATCGCTTCGTCATATGTGAGCAAGGCATCA
* *
49699169 TCTTCCTGTTCGGCAGACTCAGTGTTAAAAACACTTCTGTTAGATTGGAAGAACTCCAGGCTATG
131 TCTTCCTGTTCAGCAGACTCAGTGTTAAAAACACTTCTGTTAGATTGGAAGAACTCCAGCCTATG
* * *
49699234 TGAGTCCGACTTTCTTGCATCTTTATCCAATATGTGGGTGGGGCATCCCAAAATCCTAAAATGTA
196 TGAGTCCGACTTTCTTGCATCTTTATCCAATACGTGGGTCGGACATCCCAAAATCCTAAAATGTA
*
49699299 TACGATTCAACTTCCTACCATC-CCAAAATTTGTATAGAGTTTTCGATTCTACCTTATTTGGCAC
261 TACGATTCAACTTCCTACCA-CGCCACAATTTGTATAGAGTTTTCGATTCTACCTTATTTGGCAC
* * *
49699363 ATCATTCAGAATATAACATGTCGTTTGTACAACGCATCCCCAAAAAGAGGTTGACACCTTCAAAT
325 ATCATTCAGAATATAACAAGTCATTTGTACAACGCATCCCCAAAAAGAGGTTGACAACTTCAAAT
* * *
49699428 AACTTAATATTGAATATACCATGTCTAACAATGTTCGATTTCTTCTCTCTGCCGTGCCATTCTTT
390 AACTTAATATCGAATAGACCATGTCTAACAATGATCGATTTCTTCTCTCTGCCGTGCCATTCTTT
*
49699493 TGTGGAGTGCCCGACACGGTTAATTAGGATAGAATCTCATTCTCTATGAGGTGCCTTAAGAACTC
455 TGTGGAGTGCCCGACACGGTTAATTGGGATAGAATCTCATTCTCTATGAGGTGCCTTAAGAACTC
* *
49699558 ATCAGATAAATATGCCCCACCTCGACCAGACCGAAGTGCCTTTATGGGTAAACGTAGTTCTTTCT
520 ATCAGATAAATATGCCCCACCTCGACCAGAACGAAGTGCCTTTATGGGTAAACGTAGTTCTTTGT
* * *
49699623 ACACTTCCACATGAAACTTTTTCAATTTATCACAAGTTTCACTCTTGCG
585 ACACTTCCACACGAAACTTTTTCAATTTATCAAAAGTTTCAATCTTGCG
* *
49699672 ATGCATCAGGTATACATGTCCATATTTGGAATAGTCATTTATAAAGGTTACATAATACTCGTAAC
1 ATGCATCAGGTATACATGTCCATATTTGGAATAGTCATTGATAAAGGTTACATAATACTCATAAC
* *
49699737 CACCTCTTTTCTAGAGCTTCGAATCAACACTCTACA-CAGCTTCGTCATATGTGAGCAAGGCATT
66 CACCTCTTTTCTAGAGCTTGGAATCAACACTCTACATC-GCTTCGTCATATGTGAGCAAGGCATC
*
49699801 ATCTTCCTGTTCAGCAGACTCAGTGTTAAAAACACTTCTGCTAGATTGGAAGAACTCCAGCCTAT
130 ATCTTCCTGTTCAGCAGACTCAGTGTTAAAAACACTTCTGTTAGATTGGAAGAACTCCAGCCTAT
* * *
49699866 GTGATTCCGACTTTCTTGCATCGTTATCCAATACGTGGGTCGGACATCCCAAAATCTTAAAATGT
195 GTGAGTCCGACTTTCTTGCATCTTTATCCAATACGTGGGTCGGACATCCCAAAATCCTAAAATGT
*
49699931 ATACGATTCAACTTCCTACCACGCCACAATTTGTATAGAGTTTTCAATTCTACCTTATTTGGCAC
260 ATACGATTCAACTTCCTACCACGCCACAATTTGTATAGAGTTTTCGATTCTACCTTATTTGGCAC
*
49699996 ATCATTCAGAATATAACAAGTCATTTGTACAACGCATCCCCAAAAAGAGGTTGACAACTTTAAAT
325 ATCATTCAGAATATAACAAGTCATTTGTACAACGCATCCCCAAAAAGAGGTTGACAACTTCAAAT
* * *
49700061 AACTTAATATCGAATAGACCATGTGTAACAATGATCGATTTCTTCTCTTTGCTGTGCCATT-TTG
390 AACTTAATATCGAATAGACCATGTCTAACAATGATCGATTTCTTCTCTCTGCCGTGCCATTCTT-
** *
49700125 TTGTGGAGTGCCCGACACGGTTTTTTGGGATAGAATCTCATTTTCTATGAGGTGCCTTAAGAACT
454 TTGTGGAGTGCCCGACACGGTTAATTGGGATAGAATCTCATTCTCTATGAGGTGCCTTAAGAACT
** * * * *
49700190 CATCAGATAAATATGCCCCATGTCTACCAGAACGAAGTTCCTTTATGGGTAGACGTAGTTGTTTG
519 CATCAGATAAATATGCCCCACCTCGACCAGAACGAAGTGCCTTTATGGGTAAACGTAGTTCTTTG
* *
49700255 TACACTTCCACACGAAAGTTTTTGAATTTATCAAAAGTTTCAATCTTGCG
584 TACACTTCCACACGAAACTTTTTCAATTTATCAAAAGTTTCAATCTTGCG
** * * * * *
49700305 ATTAATAAGGTAAACATGTCCATATTTGGAATAGTCATTGATAGAGGTTACATAATGCTCATAAG
1 ATGCATCAGGTATACATGTCCATATTTGGAATAGTCATTGATAAAGGTTACATAATACTCATAAC
*
49700370 CACCTCTTTTCTAGAGCTTGGAATCAACACTCTACATCACTTCGTCATATGTGAGCAAGGCATCA
66 CACCTCTTTTCTAGAGCTTGGAATCAACACTCTACATCGCTTCGTCATATGTGAGCAAGGCATCA
*
49700435 TCTTCCTGTTCAGCAGACTCAGTGTTAAAAACACTTCTGTTAGATTGGAAGAACTCCAGGCTATG
131 TCTTCCTGTTCAGCAGACTCAGTGTTAAAAACACTTCTGTTAGATTGGAAGAACTCCAGCCTATG
* ** *
49700500 TGAGTCCGACTTTCTTGCATCTTTATCCAGTACGTCTGTCGAACATCCCAAAATCCTAAAATGTA
196 TGAGTCCGACTTTCTTGCATCTTTATCCAATACGTGGGTCGGACATCCCAAAATCCTAAAATGTA
* *
49700565 TAACG-TTCAACTTCCTACCATGCCACAATTTGTATAGAGTTTTCGATTCTTCCTTATTTGGCAC
261 T-ACGATTCAACTTCCTACCACGCCACAATTTGTATAGAGTTTTCGATTCTACCTTATTTGGCAC
*
49700629 ATTATTCAG
325 ATCATTCAG
49700638 CATAATGCAT
Statistics
Matches: 2054, Mismatches: 169, Indels: 18
0.92 0.08 0.01
Matches are distributed among these distances:
632 7 0.00
633 2040 0.99
634 7 0.00
ACGTcount: A:0.29, C:0.22, G:0.16, T:0.33
Consensus pattern (633 bp):
ATGCATCAGGTATACATGTCCATATTTGGAATAGTCATTGATAAAGGTTACATAATACTCATAAC
CACCTCTTTTCTAGAGCTTGGAATCAACACTCTACATCGCTTCGTCATATGTGAGCAAGGCATCA
TCTTCCTGTTCAGCAGACTCAGTGTTAAAAACACTTCTGTTAGATTGGAAGAACTCCAGCCTATG
TGAGTCCGACTTTCTTGCATCTTTATCCAATACGTGGGTCGGACATCCCAAAATCCTAAAATGTA
TACGATTCAACTTCCTACCACGCCACAATTTGTATAGAGTTTTCGATTCTACCTTATTTGGCACA
TCATTCAGAATATAACAAGTCATTTGTACAACGCATCCCCAAAAAGAGGTTGACAACTTCAAATA
ACTTAATATCGAATAGACCATGTCTAACAATGATCGATTTCTTCTCTCTGCCGTGCCATTCTTTT
GTGGAGTGCCCGACACGGTTAATTGGGATAGAATCTCATTCTCTATGAGGTGCCTTAAGAACTCA
TCAGATAAATATGCCCCACCTCGACCAGAACGAAGTGCCTTTATGGGTAAACGTAGTTCTTTGTA
CACTTCCACACGAAACTTTTTCAATTTATCAAAAGTTTCAATCTTGCG
Found at i:49700933 original size:337 final size:337
Alignment explanation
Indices: 49700312--49700974 Score: 1073
Period size: 337 Copynumber: 2.0 Consensus size: 337
49700302 GCGATTAATA
* *
49700312 AGGTAAACATGTCCATATTTGGAATAGTCATTGATAGAGGTTACATAATGCTCATAAGCACCTCT
1 AGGTAAACATGTCCATATTTGGAATAGTCATTGATAAAGGTTACATAATACTCATAAGCACCTCT
* *
49700377 TTTCTAGAGCTTGGAATCAACACTCTACATCACTTCGTCATATGTGAGCAAGGCATCATCTTCCT
66 TTTCCAGAGCTTGGAATCAACACTCTACATCACTTCGTCATATGTGAGCAAGACATCATCTTCCT
* *
49700442 GTTCAGCAGACTCAGTGTTAAAAACACTTCTGTTAGATTGGAAGAACTCCAGGCTATGTGAGTCC
131 GTTCAGCAGACTCAGTGTTAAAAACACTTCTGTTAGATTGAAAGAACTCCAGCCTATGTGAGTCC
* * * * *
49700507 GACTTTCTTGCATCTTTATCCAGTACGTCTGTCGAACATCCCAAAATCCTAAAATGTATAACGTT
196 AACTTTCTTGCATCTTTATCCAATACGTCGGTCGAACACCCCAAAATCCTAAAATGTATAACATT
* *
49700572 CAACTTCCTACCATGCCACAATTTGTATAGAGTTTTCGATTCTTCCTTATTTGGCACATTATTCA
261 CAACTTCCTACCATGCCACAATTTGTATAGAGTTTTCGATTCTACCTTATTTGGCACATCATTCA
49700637 GCATAATGCATC
326 GCATAATGCATC
* *
49700649 AGGTATACATGTCCATATTTGGAGA-AGTCATTGATAAAGGTTACATAATACTCGTAA-CAACCT
1 AGGTAAACATGTCCATATTTGGA-ATAGTCATTGATAAAGGTTACATAATACTCATAAGC-ACCT
*
49700712 CTTTTCCAGAGCTTGGAATCAACACTCTACATCGCTTCGTCATATGTGAGTC-AGACATCATCTT
64 CTTTTCCAGAGCTTGGAATCAACACTCTACATCACTTCGTCATATGTGAG-CAAGACATCATCTT
*
49700776 CCTTTTCAGCAGACTCAGTGTTAAAAACACTTCTGTTAGATTGAAAGAACTCCAGCCTATGTGAG
128 CCTGTTCAGCAGACTCAGTGTTAAAAACACTTCTGTTAGATTGAAAGAACTCCAGCCTATGTGAG
* * *
49700841 TCCAACTTTCTTGCATCTTTATCCAATATGTGGGTCGGACACCCCAAAATCCTAAAATGTAT-AC
193 TCCAACTTTCTTGCATCTTTATCCAATACGTCGGTCGAACACCCCAAAATCCTAAAATGTATAAC
*
49700905 AATTCAACTTCTTACCATGCCACAATTTGTATAGAGTTTTCGATTCTACCTTATTTGGCACATCA
258 -ATTCAACTTCCTACCATGCCACAATTTGTATAGAGTTTTCGATTCTACCTTATTTGGCACATCA
49700970 TTCAG
322 TTCAG
49700975 AATATAACAA
Statistics
Matches: 301, Mismatches: 21, Indels: 8
0.91 0.06 0.02
Matches are distributed among these distances:
336 3 0.01
337 296 0.98
338 2 0.01
ACGTcount: A:0.29, C:0.23, G:0.16, T:0.33
Consensus pattern (337 bp):
AGGTAAACATGTCCATATTTGGAATAGTCATTGATAAAGGTTACATAATACTCATAAGCACCTCT
TTTCCAGAGCTTGGAATCAACACTCTACATCACTTCGTCATATGTGAGCAAGACATCATCTTCCT
GTTCAGCAGACTCAGTGTTAAAAACACTTCTGTTAGATTGAAAGAACTCCAGCCTATGTGAGTCC
AACTTTCTTGCATCTTTATCCAATACGTCGGTCGAACACCCCAAAATCCTAAAATGTATAACATT
CAACTTCCTACCATGCCACAATTTGTATAGAGTTTTCGATTCTACCTTATTTGGCACATCATTCA
GCATAATGCATC
Found at i:49702007 original size:632 final size:633
Alignment explanation
Indices: 49700642--49706667 Score: 9831
Period size: 633 Copynumber: 9.5 Consensus size: 633
49700632 ATTCAGCATA
49700642 ATGCATCAGGTATACATGTCCATATTTGGAGA-AGTCATTGATAAAGGTTACATAATACTCGTAA
1 ATGCATCAGGTATACATGTCCATATTTGGA-ATAGTCATTGATAAAGGTTACATAATACTCGTAA
* * * *
49700706 CAACCTCTTTTCCAGAGCTTGGAATCAACACTCTACATCGCTTCGTCATATGTGAGTCAGACATC
65 CCACCTCTTTTCTAGAGCTTGGAATCAACACTCTACATCGCTTCGTCATATGTGAGTAAGGCATC
* *
49700771 ATCTTCCTTTTCAGCAGACTCAGTGTTAAAAACACTTCTGTTAGATTGAAAGAACTCCAGCCTAT
130 ATCTTCCTATTCAGCAGACTCAGTGTTAAAAACACTTCTGTTAGATTGGAAGAACTCCAGCCTAT
* * *
49700836 GTGAGTCCAACTTTCTTGCATCTTTATCCAATATGTGGGTCGGACACCCCAAAATCCTAAAATGT
195 GTGAGTCCGACTTTCTTGCATCTTTATCCAATACGTGGGTCGGACATCCCAAAATCCTAAAATGT
* *
49700901 ATACAATTCAACTTCTTACCATGCCACAATTTGTATAGAGTTTTCGATTCTACCTTATTTGGCAC
260 ATACGATTCAACTTCCTACCATGCCACAATTTGTATAGAGTTTTCGATTCTACCTTATTTGGCAC
*
49700966 ATCATTCAGAATATAACAAGTCGTTTGTACAACGCATCCCCAAAAAGAGGTTGACAACTTCAAAT
325 ATCATTCAGAATATAACAAGTCGTTTGTACAACGTATCCCCAAAAAGAGGTTGACAACTTCAAAT
* **
49701031 AACTTAATATCGAATATACCATGTCTCACAATGTTTGATTTCTTCTCTCTGCTGTGCCATTCTGT
390 AACTTAATATCGAATATACCATGTCTAACAATGTTCAATTTCTTCTCTCTGCTGTGCCATTCTGT
* *
49701096 TGTGGGGTGCCCGACACGGTTAATTGGGATAGAATCTGATTCTCTATGAGGTGCCTTAAGAACTC
455 TGTGGAGTGCCCGACACGGTTAATTGGGATAGAATCTCATTCTCTATGAGGTGCCTTAAGAACTC
* * * *
49701161 ATCAGATAAATATGCCCCACCTCGACTAGACCGAAGTTCCTTTATGGGTAAACATAGTTGTTTGT
520 ATCAGATAAATATGCCCCACCTCGACCAGACCGAAGTGCCTTTATGGGTAAACGTAGTTGTTTCT
* *
49701226 ACACTTCCACACGAAACTTTTTGAATTTATCAAAAGTTTCACTCTTGCA
585 ACACTTCCACACGAAACTTTTTGAATGTATCAAAAGTTTCACTCTTGCG
** * *
49701275 ATTAATCAGGTATACATGTCCATATTTGGAATAGTAATTGATAAAGGTTACATAATCCTCGTAAC
1 ATGCATCAGGTATACATGTCCATATTTGGAATAGTCATTGATAAAGGTTACATAATACTCGTAAC
* *
49701340 CACCTCTTTTCTAGAGCTTGGAATCAACACTCTACATCGCTTCGTCATATGTGAGTAAGGGATTA
66 CACCTCTTTTCTAGAGCTTGGAATCAACACTCTACATCGCTTCGTCATATGTGAGTAAGGCATCA
* * *
49701405 TCTTCCTATTCAGCA-ACTTAGCGTTAAAAACACTTCCGTTAGATTGGAAGAACTCCAGCCTATG
131 TCTTCCTATTCAGCAGACTCAGTGTTAAAAACACTTCTGTTAGATTGGAAGAACTCCAGCCTATG
* * *
49701469 TCAGTCCGACTTTCTTGCATCTTTATCCAATACGTGGTTTGGACATCCCAAAATCCTAAAATGTA
196 TGAGTCCGACTTTCTTGCATCTTTATCCAATACGTGGGTCGGACATCCCAAAATCCTAAAATGTA
* * *
49701534 TATGATTCAACTTCCTACCATGCCACAATTTGTATAGAGTTTTCGATTCCACATTATTTGGCACA
261 TACGATTCAACTTCCTACCATGCCACAATTTGTATAGAGTTTTCGATTCTACCTTATTTGGCACA
* *
49701599 TCATTCAGAATATAACAATTCGTTTGTACAACGTATCCCCAAAAAGAGGTTGACAACTTAAAATA
326 TCATTCAGAATATAACAAGTCGTTTGTACAACGTATCCCCAAAAAGAGGTTGACAACTTCAAATA
* * * * *
49701664 ACTTAATATCGTATATACCATGTCTAACAGTGTTCAATTTCTTCTCTCTACTTTGACATTCTGTT
391 ACTTAATATCGAATATACCATGTCTAACAATGTTCAATTTCTTCTCTCTGCTGTGCCATTCTGTT
* *
49701729 GTGGAGTGCCCGATACGGTTTAATTGGGATAGAATCTCATTCTCTATGAGGTACCTTAAGAACTC
456 GTGGAGTGCCCGACACGG-TTAATTGGGATAGAATCTCATTCTCTATGAGGTGCCTTAAGAACTC
* * *
49701794 ATCAGATAAATATGCCCCACCTCGACCAGACTGAAGTTCCTTTATGGGTAAACGTAATTGTTTCT
520 ATCAGATAAATATGCCCCACCTCGACCAGACCGAAGTGCCTTTATGGGTAAACGTAGTTGTTTCT
* *
49701859 ACACTTCCACACGAAACTTTTTGAATGTATCAAAAGTATCACTCTAGCG
585 ACACTTCCACACGAAACTTTTTGAATGTATCAAAAGTTTCACTCTTGCG
*
49701908 ATGCATCAGGTATACATGTCCATTTTTGGAATAGTCATTGATAAAGGTTACATAATACTCGTAAC
1 ATGCATCAGGTATACATGTCCATATTTGGAATAGTCATTGATAAAGGTTACATAATACTCGTAAC
* * * * *
49701973 CACATCTTTTCTAGAGCTTCGAATGAA-GCTCTACATCGCTTCGTCATATGTGAGCAAGGCATCA
66 CACCTCTTTTCTAGAGCTTGGAATCAACACTCTACATCGCTTCGTCATATGTGAGTAAGGCATCA
* *
49702037 TCTTCCTCTTCAGCAGACTCAGTGTTAAAAACACTTCTGCTAGATTGGAAGAACTCCAGCCTATG
131 TCTTCCTATTCAGCAGACTCAGTGTTAAAAACACTTCTGTTAGATTGGAAGAACTCCAGCCTATG
*
49702102 TGAGTCCGACTTTCTTGCATCTTTATCCAATACGTGGGTCGGACATCCGAAAATCCTAAAATGTA
196 TGAGTCCGACTTTCTTGCATCTTTATCCAATACGTGGGTCGGACATCCCAAAATCCTAAAATGTA
* * * * *
49702167 TAAGATGCAACTTCCTACTATGCCACAATTTGTATAGAGTTTTTGATTCTTCCTTATTTGGCACA
261 TACGATTCAACTTCCTACCATGCCACAATTTGTATAGAGTTTTCGATTCTACCTTATTTGGCACA
* * * *
49702232 TCATTCAGAACATAACAAGTTGTTTGTACAATGTATCCCCAAAAAGAGGTTGACAGCTTCAAATA
326 TCATTCAGAATATAACAAGTCGTTTGTACAACGTATCCCCAAAAAGAGGTTGACAACTTCAAATA
* *
49702297 ACTTAATATCGAATATACCATGTCTAACAATGAT-AGATTTCTTCTCCCTGCTGTGCCATTCTGT
391 ACTTAATATCGAATATACCATGTCTAACAATGTTCA-ATTTCTTCTCTCTGCTGTGCCATTCTGT
* * *
49702361 TGTGGAGTGCCTGACACGGTTAATTGGGATAGAATCTAATTCTCTATGAGATGCCTTAAGAACTC
455 TGTGGAGTGCCCGACACGGTTAATTGGGATAGAATCTCATTCTCTATGAGGTGCCTTAAGAACTC
* * * * *
49702426 ATCAAATAAATATGCCCCACATCGACCAGACCGAAGTTCCTTAATGGGAAAACGTAGTTGTTTCT
520 ATCAGATAAATATGCCCCACCTCGACCAGACCGAAGTGCCTTTATGGGTAAACGTAGTTGTTTCT
* *
49702491 ACATTTCCACACGAAACTTTTTGAATGCATCAAAAGTTTCACTCTTGCG
585 ACACTTCCACACGAAACTTTTTGAATGTATCAAAAGTTTCACTCTTGCG
* *
49702540 ATGCATCATGTATACATGTCCATATTTGGAGTAGTCATTGAT-AA-GTTACATAATACTCGTAAC
1 ATGCATCAGGTATACATGTCCATATTTGGAATAGTCATTGATAAAGGTTACATAATACTCGTAAC
* *
49702603 CACCTCTTTTCTAGAGCTTGGAATCAACACTGTACATCGCTTCGTCATATGTGAGTAAGACATCA
66 CACCTCTTTTCTAGAGCTTGGAATCAACACTCTACATCGCTTCGTCATATGTGAGTAAGGCATCA
49702668 TCTTCCTATTCAGCAGACTCAGTGTTAAAAACACTTCTGTTAGATTGGAAGAACTCCAGCCTATG
131 TCTTCCTATTCAGCAGACTCAGTGTTAAAAACACTTCTGTTAGATTGGAAGAACTCCAGCCTATG
* * * *
49702733 TGAGTCCTACTTTCCTGCATCTTTATCAAATATGTGGGTCGGACATCCCAAAATCCTAAAATGTA
196 TGAGTCCGACTTTCTTGCATCTTTATCCAATACGTGGGTCGGACATCCCAAAATCCTAAAATGTA
49702798 TACGATTCAACTTCCTACCATGCCACAATTTGTATAGAGTTTTCGATTCTACCTTATTTGGCACA
261 TACGATTCAACTTCCTACCATGCCACAATTTGTATAGAGTTTTCGATTCTACCTTATTTGGCACA
* * *
49702863 TCATTCAGAATATAACAAGTCGTTTGTACAACGCATCCCCAAAAAGAGGTTCACAACTTCAGATA
326 TCATTCAGAATATAACAAGTCGTTTGTACAACGTATCCCCAAAAAGAGGTTGACAACTTCAAATA
** * *
49702928 ACTTAATATCGAATATACCATGTCTAACAATGTTTGATTTCTTCTCTCTGCCGTGCCATTCTATT
391 ACTTAATATCGAATATACCATGTCTAACAATGTTCAATTTCTTCTCTCTGCTGTGCCATTCTGTT
* *
49702993 GTGGGGTGCCCGACACGGTTAATTGGGATAGAATCTCATTCTCTATGAGGTGCCTTAAGAACACA
456 GTGGAGTGCCCGACACGGTTAATTGGGATAGAATCTCATTCTCTATGAGGTGCCTTAAGAACTCA
* * * * * *
49703058 TTAGATAAATATGCCGCACCTTGACCAGAACAAAGTGCCTTTATGGGTAAACATAGTTGTTTCTA
521 TCAGATAAATATGCCCCACCTCGACCAGACCGAAGTGCCTTTATGGGTAAACGTAGTTGTTTCTA
* *
49703123 CACTTTCACACGAAAC-TTTTGAATGTATCAAAAGTATCACTCTTGCG
586 CACTTCCACACGAAACTTTTTGAATGTATCAAAAGTTTCACTCTTGCG
*
49703170 ATGCATCAGGTATACATGTCCATATTTGGAATAGTCATTGATAAAGGTTAGATAATACTCGTAAC
1 ATGCATCAGGTATACATGTCCATATTTGGAATAGTCATTGATAAAGGTTACATAATACTCGTAAC
* * * * *
49703235 CACCTCTTTTCTAGAGCTTGGAATCAATAGTCTACATCGCTTTGTCACATGTGAGTAAGACATCA
66 CACCTCTTTTCTAGAGCTTGGAATCAACACTCTACATCGCTTCGTCATATGTGAGTAAGGCATCA
*
49703300 TCTTCCTATTCAGCAGACTCAGTGTTCAAAACACTTCTGTTAGATTGGAAGAACTCCAGCCTATG
131 TCTTCCTATTCAGCAGACTCAGTGTTAAAAACACTTCTGTTAGATTGGAAGAACTCCAGCCTATG
* * * * *
49703365 TAAGTCCGACTTTCTTGCATGTTTACCCAATATGTGGGTCAGACATCCCAAAATCCTAAAATGTA
196 TGAGTCCGACTTTCTTGCATCTTTATCCAATACGTGGGTCGGACATCCCAAAATCCTAAAATGTA
*
49703430 TACGATTCAACTTCCTACCATGCCACAATTTGTCTAGAGTTTTCGATTCTACCTTATTTGGCACA
261 TACGATTCAACTTCCTACCATGCCACAATTTGTATAGAGTTTTCGATTCTACCTTATTTGGCACA
*
49703495 TCATTCAGAATATAACAAGTCGTTTGTACAACGCATCCCCAAAAAGAGGTTGACAACTTCAAATA
326 TCATTCAGAATATAACAAGTCGTTTGTACAACGTATCCCCAAAAAGAGGTTGACAACTTCAAATA
*
49703560 ACTTAATATCGAATATACCATGTCTAACTAA-GTTCAATTTCTTCTCTCTGCCGTGCCATTCTGT
391 ACTTAATATCGAATATACCATGTCTAAC-AATGTTCAATTTCTTCTCTCTGCTGTGCCATTCTGT
* *
49703624 TGTGGAGTGGCCGACACGGTTAATTGGGATAGAATCTCATTCTCTATGAGGTGCCTTAAGAACAC
455 TGTGGAGTGCCCGACACGGTTAATTGGGATAGAATCTCATTCTCTATGAGGTGCCTTAAGAACTC
*
49703689 ATCAGATAAATATGCCCCACCTCGACCAGACCGAAGTGCCTTTATGGGTAAACTTAGTTGTTTCT
520 ATCAGATAAATATGCCCCACCTCGACCAGACCGAAGTGCCTTTATGGGTAAACGTAGTTGTTTCT
* ** *
49703754 ACACTTTCACACGAAAC-TTTTGAATGTATCAAAAGCATCACTCTTGCA
585 ACACTTCCACACGAAACTTTTTGAATGTATCAAAAGTTTCACTCTTGCG
49703802 ATGCATCAGGTATACATGTCCATATTTGGAATAGTCATTGATAAAGGTTACATAATACTCGTAAC
1 ATGCATCAGGTATACATGTCCATATTTGGAATAGTCATTGATAAAGGTTACATAATACTCGTAAC
* * * ** *
49703867 CACATCTTTTCTAGAGCTTCGAATGAATGCTCTACATCGCTTCGTCATATGTGAGCAAGGCATCA
66 CACCTCTTTTCTAGAGCTTGGAATCAACACTCTACATCGCTTCGTCATATGTGAGTAAGGCATCA
* * *
49703932 TCTTCCTGTTCAGCAGACTCAGAGTTAAAAACACTTCTGCTAGATTGGAAGAACTCCAGCCTATG
131 TCTTCCTATTCAGCAGACTCAGTGTTAAAAACACTTCTGTTAGATTGGAAGAACTCCAGCCTATG
*
49703997 TGAGTCCGACTTTCCTGCATCTTTATCCAATACGTGGGTCGGACATCCCAAAATCCTAAAATGTA
196 TGAGTCCGACTTTCTTGCATCTTTATCCAATACGTGGGTCGGACATCCCAAAATCCTAAAATGTA
*
49704062 TACGATTCAACTTCCTACCATGCCACAATTTCTATAGAGTTTTCGATTCTACCTTATTTGGCACA
261 TACGATTCAACTTCCTACCATGCCACAATTTGTATAGAGTTTTCGATTCTACCTTATTTGGCACA
*
49704127 TCATTCAGAATATAACAAGTCGTTTGTACAACGTATCCCCAAAAACAGGTTGACAACTTCAAATA
326 TCATTCAGAATATAACAAGTCGTTTGTACAACGTATCCCCAAAAAGAGGTTGACAACTTCAAATA
* *
49704192 ACTTAATATCGAATATACAATGTCTATCAATGTTCAATTTCTTCTCTCTGCTGTGCCATTCTGTT
391 ACTTAATATCGAATATACCATGTCTAACAATGTTCAATTTCTTCTCTCTGCTGTGCCATTCTGTT
49704257 GTGGAGTGCCCGACACGGTTAATTGGGATAGAATCTCATTCTCTATGAGGTGCCTTAAGAACTCA
456 GTGGAGTGCCCGACACGGTTAATTGGGATAGAATCTCATTCTCTATGAGGTGCCTTAAGAACTCA
* *
49704322 TCAGATAAATATGCCCCACCTTGACCCGACCGAAGTGCCTTTATGGGTAAACGTAGTTGTTTCTA
521 TCAGATAAATATGCCCCACCTCGACCAGACCGAAGTGCCTTTATGGGTAAACGTAGTTGTTTCTA
* *
49704387 CACTT-CACAAGAAACTTTTTGAATTTATCAAAAGTTTCACTCTTGCG
586 CACTTCCACACGAAACTTTTTGAATGTATCAAAAGTTTCACTCTTGCG
*
49704434 ATGCATCAGGTATACATGTCCATATTTGGAATAGTCATTGATAAAGG-TACATAATACTCATAAC
1 ATGCATCAGGTATACATGTCCATATTTGGAATAGTCATTGATAAAGGTTACATAATACTCGTAAC
* *
49704498 CACCTCTTTTCTAGAGCTTGGAATCAACACTGTACATCGCTTCGTCATATGTGAGTAAGACATCA
66 CACCTCTTTTCTAGAGCTTGGAATCAACACTCTACATCGCTTCGTCATATGTGAGTAAGGCATCA
* *
49704563 TCTTCCTATTCAACAGACTCAGTGTTAAAAACACTTCTGTTAGATTGGAAGAACTCCAGACTATG
131 TCTTCCTATTCAGCAGACTCAGTGTTAAAAACACTTCTGTTAGATTGGAAGAACTCCAGCCTATG
*
49704628 TGAGTCCGACTTTCTTGCATCTTTATCCAATACGTGGGTTGGACATCCCAAAATCCTAAAATGTA
196 TGAGTCCGACTTTCTTGCATCTTTATCCAATACGTGGGTCGGACATCCCAAAATCCTAAAATGTA
*
49704693 TACGATTCAACTTCCTACCATGCCACAATTTCTATAGAGTTTTCGATTCTACCTTATTTGGCACA
261 TACGATTCAACTTCCTACCATGCCACAATTTGTATAGAGTTTTCGATTCTACCTTATTTGGCACA
* *
49704758 TCATTCAGAATATAACAAGTCATTTGTACAACGCATCCCCAAAAAGAGGTTGACAACTTCAAATA
326 TCATTCAGAATATAACAAGTCGTTTGTACAACGTATCCCCAAAAAGAGGTTGACAACTTCAAATA
* * *
49704823 ACTTAATATCCAATATACCATGTCTAACAATGTTCGATTTCTTCTCTCTGCTATGCCATTCTGTT
391 ACTTAATATCGAATATACCATGTCTAACAATGTTCAATTTCTTCTCTCTGCTGTGCCATTCTGTT
49704888 GTCGG-GTGCCCGACACGGTTAATTGGGATAGAATCTCATTCTCTATGAGGTGCCTTAAGAACTC
456 GT-GGAGTGCCCGACACGGTTAATTGGGATAGAATCTCATTCTCTATGAGGTGCCTTAAGAACTC
* *
49704952 ATCAGATAAATATGCCCCACCTCGACCAAACCGAAGTGCCTTTATGGGTAAACATAGTTGTTTCT
520 ATCAGATAAATATGCCCCACCTCGACCAGACCGAAGTGCCTTTATGGGTAAACGTAGTTGTTTCT
* * *
49705017 ACCCTTCCACACGAAACTTTTTGAATGTATCAAAAGTATCACTCTTGCA
585 ACACTTCCACACGAAACTTTTTGAATGTATCAAAAGTTTCACTCTTGCG
* *
49705066 ATGCATTAGGTATACATGT-CAGTATTTGGAATAGTCATTGATAAATGTTACATAATACTCGTAA
1 ATGCATCAGGTATACATGTCCA-TATTTGGAATAGTCATTGATAAAGGTTACATAATACTCGTAA
* * * * *
49705130 GCACCTCATTTCTAGAGCTTGGATTCAACACTCTACATCGCTTCGTTATATGTGAGCAAGGCATC
65 CCACCTCTTTTCTAGAGCTTGGAATCAACACTCTACATCGCTTCGTCATATGTGAGTAAGGCATC
* * * *
49705195 ATCTTCCTGTTCAGCAGACTCAGTGTTAAAAACACTT-TCGCTACAGTGGAAGAACTCCAGCCTA
130 ATCTTCCTATTCAGCAGACTCAGTGTTAAAAACACTTCT-GTTAGATTGGAAGAACTCCAGCCTA
*
49705259 TGTGAGTCTGACTTTCTTGCATCTTTATCCAATACGTGGGTCGGACATCCCAAAATCCTAAAATG
194 TGTGAGTCCGACTTTCTTGCATCTTTATCCAATACGTGGGTCGGACATCCCAAAATCCTAAAATG
* * *
49705324 TATAAGATCCAACTTCCTACCATGCCACAATTTGTATAGAGTTTTCGATTCTTCCTTATTTGGCA
259 TATACGATTCAACTTCCTACCATGCCACAATTTGTATAGAGTTTTCGATTCTACCTTATTTGGCA
* * *
49705389 CATCGTTCAGAATATAACAAGTCGTTTGTACAACGTATCCCAAAAAAGAGGTTGACAACTTTAAA
324 CATCATTCAGAATATAACAAGTCGTTTGTACAACGTATCCCCAAAAAGAGGTTGACAACTTCAAA
* * * *
49705454 TAACTTAATATCGAATAGACCATGTCTAACAATGATCGATTTCTTCTCTTTGCTGTGCCATTCTG
389 TAACTTAATATCGAATATACCATGTCTAACAATGTTCAATTTCTTCTCTCTGCTGTGCCATTCTG
* * *
49705519 TTGTAGAGTGCCCGACACGGTTATTTGGGATAGAATCTCATTCTCTATGAGGTGCCTTAAGAAAT
454 TTGTGGAGTGCCCGACACGGTTAATTGGGATAGAATCTCATTCTCTATGAGGTGCCTTAAGAACT
* * *
49705584 CAT-ACGATAAATATGCCCCACCTCGACCAGAACGAAGTTCCTTTATGGGTAGACGTAGTTGTTT
519 CATCA-GATAAATATGCCCCACCTCGACCAGACCGAAGTGCCTTTATGGGTAAACGTAGTTGTTT
* * *
49705648 GTACACTTCCACACGAAACTTTTTGAATTTATCAAAAGTTTCAATCTTGCG
583 CTACACTTCCACACGAAACTTTTTGAATGTATCAAAAGTTTCACTCTTGCG
** * * *
49705699 ATTAATAAGGTATACATGTCCATATTTGGAATAGTCATTGATAAAGGTTACATAATACTCATAAG
1 ATGCATCAGGTATACATGTCCATATTTGGAATAGTCATTGATAAAGGTTACATAATACTCGTAAC
*
49705764 CACCTCTTTTCTAGAGCTTGGAATCAACACTCTACATCGCTTCGTCATATGTGAGTAAGGGATCA
66 CACCTCTTTTCTAGAGCTTGGAATCAACACTCTACATCGCTTCGTCATATGTGAGTAAGGCATCA
* *
49705829 TCATCCTATTCAGCAAACTCAGTGTTAAAAACACTTCTGTTAGATTGGAAGAACTCCAGCCTATG
131 TCTTCCTATTCAGCAGACTCAGTGTTAAAAACACTTCTGTTAGATTGGAAGAACTCCAGCCTATG
49705894 TGAGTCCGACTTTCTTGCATCTTTATCCAATACGTGGGTCGGACATCCCAAAATCCTAAAATGTA
196 TGAGTCCGACTTTCTTGCATCTTTATCCAATACGTGGGTCGGACATCCCAAAATCCTAAAATGTA
49705959 TACGATTCAACTTCCTACCATGCCACAATTTGTATAGAGTTTTCGATTCTACCTTATTTGGCACA
261 TACGATTCAACTTCCTACCATGCCACAATTTGTATAGAGTTTTCGATTCTACCTTATTTGGCACA
* *
49706024 TCATTCAGAATATAACAAGTCGATTGTACAACATATCCCCAAAAAGAGGTTGACAACTTCAAATA
326 TCATTCAGAATATAACAAGTCGTTTGTACAACGTATCCCCAAAAAGAGGTTGACAACTTCAAATA
* *
49706089 ACTTAATATCGAATATACCATGTCTAACAATGTTCGAA-TTCTTCTCTCTGCTGTGCCATTTTTT
391 ACTTAATATCGAATATACCATGTCTAACAATGTTC-AATTTCTTCTCTCTGCTGTGCCATTCTGT
*
49706153 TGTGGAGTGCCCAACACGGTTAATTGGGATAGAATCTCATTCTCTATGAGGTGCCTTAAGAA-TG
455 TGTGGAGTGCCCGACACGGTTAATTGGGATAGAATCTCATTCTCTATGAGGTGCCTTAAGAACT-
49706217 CATCAGATAAATATGCCCCACCTCGACCAGACCGAAGTGCCTTTATGGGTAAACGTAGTTGTTTC
519 CATCAGATAAATATGCCCCACCTCGACCAGACCGAAGTGCCTTTATGGGTAAACGTAGTTGTTTC
*
49706282 TACACTTCCACACGAAACTTTTTGAATGTATCAAAAGTTTCACTCTTACG
584 TACACTTCCACACGAAACTTTTTGAATGTATCAAAAGTTTCACTCTTGCG
*
49706332 ATGCATCAGGTATACATGTCCCTATTTGGAATAGTCATTGATAAAGGTTACATAATACTCGTAAC
1 ATGCATCAGGTATACATGTCCATATTTGGAATAGTCATTGATAAAGGTTACATAATACTCGTAAC
* * *
49706397 CACCTCTTTTCTAGAGCTTGGAATCAACACTCTACATCACTTCGTCATATTTGAGCAAGGCATCA
66 CACCTCTTTTCTAGAGCTTGGAATCAACACTCTACATCGCTTCGTCATATGTGAGTAAGGCATCA
* * *
49706462 TCTTCCTGTTCAGCAGACTCAGTGTTAAAAACACTTCTGCTAGATGGGAAGAACTCCAGCCTATG
131 TCTTCCTATTCAGCAGACTCAGTGTTAAAAACACTTCTGTTAGATTGGAAGAACTCCAGCCTATG
* * **
49706527 TGAGTCTGACTTTCTTGCATCTTTATCCAGTACGTCTGTC-GACATCCCAAAATCCTAAAATGTA
196 TGAGTCCGACTTTCTTGCATCTTTATCCAATACGTGGGTCGGACATCCCAAAATCCTAAAATGTA
*
49706591 TAAGATTCAACTTCCTACCATGCCACAATTTGTATAGAGTTTTCGATTCTACCTTATTTGGCGA-
261 TACGATTCAACTTCCTACCATGCCACAATTTGTATAGAGTTTTCGATTCTACCTTATTTGGC-AC
49706655 ATCATTCAGAATA
325 ATCATTCAGAATA
49706668 ATGCATCAGG
Statistics
Matches: 5000, Mismatches: 369, Indels: 49
0.92 0.07 0.01
Matches are distributed among these distances:
630 112 0.02
631 988 0.20
632 1900 0.38
633 1995 0.40
634 5 0.00
ACGTcount: A:0.30, C:0.22, G:0.16, T:0.32
Consensus pattern (633 bp):
ATGCATCAGGTATACATGTCCATATTTGGAATAGTCATTGATAAAGGTTACATAATACTCGTAAC
CACCTCTTTTCTAGAGCTTGGAATCAACACTCTACATCGCTTCGTCATATGTGAGTAAGGCATCA
TCTTCCTATTCAGCAGACTCAGTGTTAAAAACACTTCTGTTAGATTGGAAGAACTCCAGCCTATG
TGAGTCCGACTTTCTTGCATCTTTATCCAATACGTGGGTCGGACATCCCAAAATCCTAAAATGTA
TACGATTCAACTTCCTACCATGCCACAATTTGTATAGAGTTTTCGATTCTACCTTATTTGGCACA
TCATTCAGAATATAACAAGTCGTTTGTACAACGTATCCCCAAAAAGAGGTTGACAACTTCAAATA
ACTTAATATCGAATATACCATGTCTAACAATGTTCAATTTCTTCTCTCTGCTGTGCCATTCTGTT
GTGGAGTGCCCGACACGGTTAATTGGGATAGAATCTCATTCTCTATGAGGTGCCTTAAGAACTCA
TCAGATAAATATGCCCCACCTCGACCAGACCGAAGTGCCTTTATGGGTAAACGTAGTTGTTTCTA
CACTTCCACACGAAACTTTTTGAATGTATCAAAAGTTTCACTCTTGCG
Found at i:49706945 original size:336 final size:336
Alignment explanation
Indices: 49706332--49707003 Score: 1123
Period size: 336 Copynumber: 2.0 Consensus size: 336
49706322 CACTCTTACG
*
49706332 ATGCATCAGGTATACATGTCCCTATTTGGAATAGTCATTGATAAAGGTTACATAATACTCGTAAC
1 ATGCATCAGGTATACATGTCCATATTTGGAATAGTCATTGATAAAGGTTACATAATACTCGTAAC
* * * *
49706397 CACCTCTTTTCTAGAGCTTGGAATCAACACTCTACATCACTTCGTCATATTTGAGCAAGGCATCA
66 CACCACTTTTCTAGAGCTTGGAATCAACACTCTACATCACTTCGTCATATGTCAGCAAGACATCA
*
49706462 TCTTCCTGTTCAGCAGACTCAGTGTTAAAAACACTTCTGCTAGATGGGAAGAACTCCAGCCTATG
131 TCTTCCTATTCAGCAGACTCAGTGTTAAAAACACTTCTGCTAGATGGGAAGAACTCCAGCCTATG
* * * *
49706527 TGAGTCTGACTTTCTTGCATCTTTATCCAGTACGTCTGTCGACATCCCAAAATCCTAAAATGTAT
196 TGAGTCCGACTTTCTTGCATCTTTATCCAATACGTCGGTCGACACCCCAAAATCCTAAAATGTAT
49706592 AAGATTCAACTTCCTACCATGCCACAATTTGTATAGAGTTTTCGATTCTACCTTATTTGGCGA-A
261 AAGATTCAACTTCCTACCATGCCACAATTTGTATAGAGTTTTCGATTCTACCTTATTTGGC-ACA
49706656 TCATTCAGAATA
325 TCATTCAGAATA
*
49706668 ATGCATCAGGTATACATGTCCATATTTGGAGTAGTCATTGATAAAGGTTACATAATACTCGTAAC
1 ATGCATCAGGTATACATGTCCATATTTGGAATAGTCATTGATAAAGGTTACATAATACTCGTAAC
* * *
49706733 CACCACTTTTTTAGAGCTTGGAATCAACACTCTACATCGCTTCGTCATATGTCAGTAAGACATCA
66 CACCACTTTTCTAGAGCTTGGAATCAACACTCTACATCACTTCGTCATATGTCAGCAAGACATCA
* * *
49706798 TCTTCCTATTCAGTAGACTCAGTGTTAAAAACACTTCT-TTAGATTGGAAGAACTCCAGCCTATG
131 TCTTCCTATTCAGCAGACTCAGTGTTAAAAACACTTCTGCTAGATGGGAAGAACTCCAGCCTATG
* *
49706862 TGAGTCCGACTTTCTTGCATCTTTATCCAATATGTGGGTCGGACACCCCAAAATCCTAAAATGTA
196 TGAGTCCGACTTTCTTGCATCTTTATCCAATACGTCGGTC-GACACCCCAAAATCCTAAAATGTA
* *
49706927 TACGATTCAACTTCCTACCATGCTACAATTTGTATAGAGTTTTCGATTCTACCTTATTTGGCACA
260 TAAGATTCAACTTCCTACCATGCCACAATTTGTATAGAGTTTTCGATTCTACCTTATTTGGCACA
49706992 TCATTCAGAATA
325 TCATTCAGAATA
49707004 TAACAAGTTG
Statistics
Matches: 313, Mismatches: 21, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
335 60 0.19
336 253 0.81
ACGTcount: A:0.29, C:0.22, G:0.15, T:0.33
Consensus pattern (336 bp):
ATGCATCAGGTATACATGTCCATATTTGGAATAGTCATTGATAAAGGTTACATAATACTCGTAAC
CACCACTTTTCTAGAGCTTGGAATCAACACTCTACATCACTTCGTCATATGTCAGCAAGACATCA
TCTTCCTATTCAGCAGACTCAGTGTTAAAAACACTTCTGCTAGATGGGAAGAACTCCAGCCTATG
TGAGTCCGACTTTCTTGCATCTTTATCCAATACGTCGGTCGACACCCCAAAATCCTAAAATGTAT
AAGATTCAACTTCCTACCATGCCACAATTTGTATAGAGTTTTCGATTCTACCTTATTTGGCACAT
CATTCAGAATA
Found at i:49710174 original size:628 final size:633
Alignment explanation
Indices: 49706668--49710790 Score: 6863
Period size: 633 Copynumber: 6.5 Consensus size: 633
49706658 ATTCAGAATA
*
49706668 ATGCATCAGGTATACATGTCCATATTTGGAGTAGTCATTGATAAAGGTTACATAATACTCGTAAC
1 ATGCATCAGGTATACATGTCCATATTTGGAATAGTCATTGATAAAGGTTACATAATACTCGTAAC
* * * * *
49706733 CACCACTTTTTTAGAGCTTGGAATCAACACTCTACATCGCTTCGTCATATGTCAGTAAGACATCA
66 CACCTCTTTTCTAGAGCTTGGAATCAACACTCTACATCGCTTCGTCATATGTGAGCAAGGCATCA
* * *
49706798 TCTTCCTATTCAGTAGACTCAGTGTTAAAAACACTTCT-TTAGATTGGAAGAACTCCAGCCTATG
131 TCTTCCTGTTCAGCAGACTCAGTGTTAAAAACACTTCTGCTAGATTGGAAGAACTCCAGCCTATG
* *
49706862 TGAGTCCGACTTTCTTGCATCTTTATCCAATATGTGGGTCGGACACCCCAAAATCCTAAAATGTA
196 TGAGTCCGACTTTCTTGCATCTTTATCCAATACGTGGGTCGGACATCCCAAAATCCTAAAATGTA
*
49706927 TACGATTCAACTTCCTACCATGCTACAATTTGTATAGAGTTTTCGATTCTACCTTATTTGGCACA
261 TACGATTCAACTTCCTACCATGCCACAATTTGTATAGAGTTTTCGATTCTACCTTATTTGGCACA
* *
49706992 TCATTCAGAATATAACAAGTTGTTTGTACAACGCATCCCTAAAAAGAGGTTGACAACTTCAAATA
326 TCATTCAGAATATAACAAGTCGTTTGTACAACGCATCCCCAAAAAGAGGTTGACAACTTCAAATA
* * *
49707057 ACTTAATATCGAATATACCATGTCTAACAATGTTTGATTTCTTCTCTCTGCTGTGCTATTCTATT
391 ACTTAATATCGAATATACCATGTCTAACAATGTTCGATTTCTTCTCTCTGCTGTGCCATTCTGTT
*
49707122 GTGGAGTGCCCGACACGGTTAATTGGGATAGAATCTCATTCTCTATGAGGTGCCTTAAGAACTCT
456 GTGGAGTGCCCGACACGGTTAATTGGGATAGAATCTCATTCTCTATGAGGTGCCTTAAGAACTCA
* * * * * *
49707187 TCAAATAAATATGCCCCACTTTGACCAGACCGAAGTGCCTTTCTAGGTAAACATAGTTGTTTCTA
521 TCAGATAAATATGCCCCACCTCGACCAGACCGAAGTGCCTTTATGGGTAAACGTAGTTGTTTCTA
* *
49707252 CACTTTCACACGAAACTTTTTGAATGTATCAAAAGTATCACTCTAGCG
586 CACTTCCACACGAAACTTTTTGAATGTATCAAAAGTATCACTCTTGCG
*
49707300 ATGCATCAGGTATACATGTCCATATTTGGAATAGTCACTGATAAAGGTTACATAATACTCGTAAC
1 ATGCATCAGGTATACATGTCCATATTTGGAATAGTCATTGATAAAGGTTACATAATACTCGTAAC
* * * * * * *
49707365 CACATCCTTTCTAGAGCTTCGAATGAACGCTCTACATCACTTCGTCATATGTGAGAAAGGCATCA
66 CACCTCTTTTCTAGAGCTTGGAATCAACACTCTACATCGCTTCGTCATATGTGAGCAAGGCATCA
49707430 TCTTCCTGTTCAGCAGACTCAGTGTTAAAAACACTTCTGCTAGATTGGAAGAACTCCAGCC-ATT
131 TCTTCCTGTTCAGCAGACTCAGTGTTAAAAACACTTCTGCTAGATTGGAAGAACTCCAGCCTA-T
*
49707494 GTGAGTCCGACTTTCTTGCATCTTTATCCAATACGTGGGTCGGACATCCCAAAATCCTAAACTGT
195 GTGAGTCCGACTTTCTTGCATCTTTATCCAATACGTGGGTCGGACATCCCAAAATCCTAAAATGT
* * * *
49707559 ATAAGATGCAACTTCCTACCATGCCACAATTTGTTTAGAGTTTTCGATTCTTCCTTATTTGGCAC
260 ATACGATTCAACTTCCTACCATGCCACAATTTGTATAGAGTTTTCGATTCTACCTTATTTGGCAC
* *
49707624 ATCATTCAGAACATAACAAGTCGTTTGTACAACGTATCCCCAAAAAGAGGTTGACAACTTCAAAT
325 ATCATTCAGAATATAACAAGTCGTTTGTACAACGCATCCCCAAAAAGAGGTTGACAACTTCAAAT
* * *
49707689 AACTTAATATAGAATATACCATGTCTAACAATGATCGATTTCTTCTCCCTGCTGTGCCATTCTGT
390 AACTTAATATCGAATATACCATGTCTAACAATGTTCGATTTCTTCTCTCTGCTGTGCCATTCTGT
* *
49707754 TGTGGAGTGCCTGACACGGTTAATTGGGATAGAATCTAATTCTCTATGAGGTGCCTTAAGAACTC
455 TGTGGAGTGCCCGACACGGTTAATTGGGATAGAATCTCATTCTCTATGAGGTGCCTTAAGAACTC
* * * * * * * *
49707819 ATCAGATAAATATACTCCAGCTCTACCAGACCGAAGTTCCTTAATGGGAAAACGTAGTTGTTTTT
520 ATCAGATAAATATGCCCCACCTCGACCAGACCGAAGTGCCTTTATGGGTAAACGTAGTTGTTTCT
* *
49707884 ACACTTCCACACGAAACTTTTTGAATGTATCAAAAGTTTCACTCTTACG
585 ACACTTCCACACGAAACTTTTTGAATGTATCAAAAGTATCACTCTTGCG
* *
49707933 ATGCATCAGGTATGCATGTCCATATTTGGAATAGTCATTGATACAGGTTACATAATACTCGTAAC
1 ATGCATCAGGTATACATGTCCATATTTGGAATAGTCATTGATAAAGGTTACATAATACTCGTAAC
* ** *
49707998 CACCTCTTTTCTAGAGCTTCGAATCAACACTCTACATCGCTTCGTCATATGTGAGTGAGGGATCA
66 CACCTCTTTTCTAGAGCTTGGAATCAACACTCTACATCGCTTCGTCATATGTGAGCAAGGCATCA
* * * *
49708063 TCTTCCTATTCAGTAGACTCAGTGTTAAAAACACTTCTGTTAGATTGGAAGAAGTCCAGCCTATG
131 TCTTCCTGTTCAGCAGACTCAGTGTTAAAAACACTTCTGCTAGATTGGAAGAACTCCAGCCTATG
* * * *
49708128 TGAGTCTGACTTTCTTACATCTTTATCTAATACGTGGGTCGGATATCCCAAAATCCTAAAATGTA
196 TGAGTCCGACTTTCTTGCATCTTTATCCAATACGTGGGTCGGACATCCCAAAATCCTAAAATGTA
49708193 TACGATTCAACTTCCTACCATGCCACAATTTGTATAGAGTTTTCGATTCTACCTTATTTGGCACA
261 TACGATTCAACTTCCTACCATGCCACAATTTGTATAGAGTTTTCGATTCTACCTTATTTGGCACA
* *
49708258 TCATTCAGAATATAACAAGTCGTTTGTACAACGTATCCCCAAAAAGAGGTTGAAAACTTCAAATA
326 TCATTCAGAATATAACAAGTCGTTTGTACAACGCATCCCCAAAAAGAGGTTGACAACTTCAAATA
*
49708323 ACTTAATATCGAATATACCATGTCTAACAATGTTCGATTTCTTCCCTCTGCTGTGCCATTCTGTT
391 ACTTAATATCGAATATACCATGTCTAACAATGTTCGATTTCTTCTCTCTGCTGTGCCATTCTGTT
* *
49708388 GTGGAGTGCCCGACAGGGTTAATTGGGATAGAATCTCATTCTCTATGAGGTGCCTTAAGAACTTA
456 GTGGAGTGCCCGACACGGTTAATTGGGATAGAATCTCATTCTCTATGAGGTGCCTTAAGAACTCA
*
49708453 TCAGATAAATATGCCCCACCTCGACCAGACCGAAGTGCCTTTATGGGTAAACGTAGTTGCTTCTA
521 TCAGATAAATATGCCCCACCTCGACCAGACCGAAGTGCCTTTATGGGTAAACGTAGTTGTTTCTA
* * **
49708518 CACTTCCAAATGAAACACTTTGAATGTATC-AAAGTATCACTCTTGCG
586 CACTTCCACACGAAACTTTTTGAATGTATCAAAAGTATCACTCTTGCG
49708565 ATGCATCAGGTATACATGTCCATATTTGGAATAGTCATTGATAAAGGTTACATAATACTCGTAAC
1 ATGCATCAGGTATACATGTCCATATTTGGAATAGTCATTGATAAAGGTTACATAATACTCGTAAC
**
49708630 CACCTCTTTTCTAGAGCTTGGAATCAACACTCTACATCGCTTCGTTGTATGTGAGCAAGGCATCA
66 CACCTCTTTTCTAGAGCTTGGAATCAACACTCTACATCGCTTCGTCATATGTGAGCAAGGCATCA
* * *
49708695 TCTTCCTGTTTAGCAGACTCAGAGTTAAAAACACTTCTGCTATATTGGAAGAACTCCAGCCTATG
131 TCTTCCTGTTCAGCAGACTCAGTGTTAAAAACACTTCTGCTAGATTGGAAGAACTCCAGCCTATG
* * * * *
49708760 TGAGTCAGACTTTCTTTCATCTTTATCTAATACGTGGGTCGGACATTCCAAAATCCTAAAATATA
196 TGAGTCCGACTTTCTTGCATCTTTATCCAATACGTGGGTCGGACATCCCAAAATCCTAAAATGTA
* * * * *
49708825 TAAGATTCAACTTCCTACTATTCCACAATTTGTATAGAGTTTTCGATTCTGCCTTATTTGGAACA
261 TACGATTCAACTTCCTACCATGCCACAATTTGTATAGAGTTTTCGATTCTACCTTATTTGGCACA
49708890 TCATTCAGAATATAACAAGTCGTTTGTACAACGCATCCCCAAAAAGAGGTTGACAACTTCAAATA
326 TCATTCAGAATATAACAAGTCGTTTGTACAACGCATCCCCAAAAAGAGGTTGACAACTTCAAATA
* *
49708955 ACTTAATATCGAATATACCATGTCTAACTATGTTCAATTTCTTCTCTCTGC-GTGCCATTCTGTT
391 ACTTAATATCGAATATACCATGTCTAACAATGTTCGATTTCTTCTCTCTGCTGTGCCATTCTGTT
* *
49709019 GTGGAGTGGCCGACACGGTTAATTGGGATAGAATCTCATTCTCTATGAGGTGCCTTAAGAACACA
456 GTGGAGTGCCCGACACGGTTAATTGGGATAGAATCTCATTCTCTATGAGGTGCCTTAAGAACTCA
*
49709084 TCAGATAAATATGCCCCACCTCGACCAGACCGAAGTGCCTTTATGGGTAAACTTAGTTGTTTCTA
521 TCAGATAAATATGCCCCACCTCGACCAGACCGAAGTGCCTTTATGGGTAAACGTAGTTGTTTCTA
* * *
49709149 CACTTTCACACGAAAC-TTTTGAATGTATCAAAAGCATCACTCTTGCA
586 CACTTCCACACGAAACTTTTTGAATGTATCAAAAGTATCACTCTTGCG
49709196 ATGCATCAGGTATACATGTCCATATTTGGAATAGTCATTGATAAAGGTTACATAATACTCGTAAC
1 ATGCATCAGGTATACATGTCCATATTTGGAATAGTCATTGATAAAGGTTACATAATACTCGTAAC
* * *
49709261 CACATCTTTTCTAGAGCTTCGAAT-GA-ACTCTACATCGCTTCGTCATATGTGAGCAAGGCATCA
66 CACCTCTTTTCTAGAGCTTGGAATCAACACTCTACATCGCTTCGTCATATGTGAGCAAGGCATCA
*
49709324 TCTTCCTGTTCAGCAGACTCAGAGTTAAAAACACTTCTGCTAGATTGGAAGAACTCCAGCCTATG
131 TCTTCCTGTTCAGCAGACTCAGTGTTAAAAACACTTCTGCTAGATTGGAAGAACTCCAGCCTATG
49709389 TGAGTCCGACTTTC-TGCATCTTTATCCAATACGTGGGTCGGACATCCCAAAATCCTAAAATGTA
196 TGAGTCCGACTTTCTTGCATCTTTATCCAATACGTGGGTCGGACATCCCAAAATCCTAAAATGTA
*
49709453 TACGATTCAACTTCCTACCATGCCACAATTTCTATAGAGTTTTCGATTCTACCTTATTTGGCACA
261 TACGATTCAACTTCCTACCATGCCACAATTTGTATAGAGTTTTCGATTCTACCTTATTTGGCACA
*
49709518 TCATTCAGAATATAACAAGTCGTTTGTACAACGTATCCCCAAAAA-AGGTTGACAACTTCAAATA
326 TCATTCAGAATATAACAAGTCGTTTGTACAACGCATCCCCAAAAAGAGGTTGACAACTTCAAATA
*
49709582 ACTTAATATCGAATATA-CATGTCT-ACAATGTTCAATTTCTTCTCTCTGCTGTGCCATTCTGTT
391 ACTTAATATCGAATATACCATGTCTAACAATGTTCGATTTCTTCTCTCTGCTGTGCCATTCTGTT
49709645 GT-GAGTGCCCGACACGGTTAATTGGGATAGAATCTCATTCTCTATGAGGTGCCTTAAGAACTCA
456 GTGGAGTGCCCGACACGGTTAATTGGGATAGAATCTCATTCTCTATGAGGTGCCTTAAGAACTCA
* *
49709709 TCAGATAAATATGCCCCACCTTGACCCGACCGAAGTGCCTTTATGGGTAAACGTAGTTGTTTCTA
521 TCAGATAAATATGCCCCACCTCGACCAGACCGAAGTGCCTTTATGGGTAAACGTAGTTGTTTCTA
* * *
49709774 CACTTCCACAAGAAACTTTTTGAATTTATCAAAAGTTTCACTCTTGCG
586 CACTTCCACACGAAACTTTTTGAATGTATCAAAAGTATCACTCTTGCG
*
49709822 ATGCATCAGGTATACATGTCCATATTTGGAATAGTCATTGATAAAGG-TACATAATACTCATAAC
1 ATGCATCAGGTATACATGTCCATATTTGGAATAGTCATTGATAAAGGTTACATAATACTCGTAAC
* * *
49709886 CACCTCTTTTCTAGAGCTTGGAATCAACACTGTACATCGCTTCGTCATATGTGAGTAAGACATCA
66 CACCTCTTTTCTAGAGCTTGGAATCAACACTCTACATCGCTTCGTCATATGTGAGCAAGGCATCA
* * *
49709951 TCTTCCTATTCAACAGACTCAGTGTTAAAAACACTTCTGTTAGATTGGAAGAACTCCAGCCTATG
131 TCTTCCTGTTCAGCAGACTCAGTGTTAAAAACACTTCTGCTAGATTGGAAGAACTCCAGCCTATG
*
49710016 TGAGTCCGACTTTCTTGCATCTTTATCCAATACGTGGGTTGGACATCCCAAAATCCTAAAATGTA
196 TGAGTCCGACTTTCTTGCATCTTTATCCAATACGTGGGTCGGACATCCCAAAATCCTAAAATGTA
*
49710081 TACGATTCAACTTCCTACCATGCCACAATTTCTATAGAGTTTTCGATTCTACCTTATTTGGCACA
261 TACGATTCAACTTCCTACCATGCCACAATTTGTATAGAGTTTTCGATTCTACCTTATTTGGCACA
*
49710146 TCATTCAGAATATAACAAGTCATTTGTACAACGCATCCCCAAAAAGAGGTTGACAACTTCAAATA
326 TCATTCAGAATATAACAAGTCGTTTGTACAACGCATCCCCAAAAAGAGGTTGACAACTTCAAATA
* *
49710211 ACTTAATATCCAATATACCATGTCTAACAATGTTCGATTTCTTCTCTCTGCTGTGCCATTTTGTT
391 ACTTAATATCGAATATACCATGTCTAACAATGTTCGATTTCTTCTCTCTGCTGTGCCATTCTGTT
*
49710276 GTGGAGTGCCCAACACGGTTAATTGGGATAGAATCTCATTCTCTATGAGGTGCCTTAAGAA-TGC
456 GTGGAGTGCCCGACACGGTTAATTGGGATAGAATCTCATTCTCTATGAGGTGCCTTAAGAACT-C
49710340 ATCAGATAAATATGCCCCACCTCGACCAGACCGAAGTGCCTTTATGGGTAAACGTAGTTGTTTCT
520 ATCAGATAAATATGCCCCACCTCGACCAGACCGAAGTGCCTTTATGGGTAAACGTAGTTGTTTCT
* *
49710405 ACACTTCCACACGAAACTTTTTGAATGTATCAAAAGTTTCACTCTTACG
585 ACACTTCCACACGAAACTTTTTGAATGTATCAAAAGTATCACTCTTGCG
*
49710454 ATGCATCAGGTATACATGTCCCTATTTGGAATAGTCATTGATAAAGGTTACATAATACTCGTAAC
1 ATGCATCAGGTATACATGTCCATATTTGGAATAGTCATTGATAAAGGTTACATAATACTCGTAAC
* *
49710519 CACCTCTTTTCTAGAGCTTGGAATCAACACTCTACATCACTTCGTCATATTTGAGCAAGGCATCA
66 CACCTCTTTTCTAGAGCTTGGAATCAACACTCTACATCGCTTCGTCATATGTGAGCAAGGCATCA
*
49710584 TCTTCCTGTTCAGCAGACTCAGTGTTAAAAACACTTCTGCTAGATGGGAAGAACTCCAGCCTATG
131 TCTTCCTGTTCAGCAGACTCAGTGTTAAAAACACTTCTGCTAGATTGGAAGAACTCCAGCCTATG
* * **
49710649 TGAGTCTGACTTTCTTGCATCTTTATCCAGTACGTCTGTCGGACATCCCAAAATCCTAAAATGTA
196 TGAGTCCGACTTTCTTGCATCTTTATCCAATACGTGGGTCGGACATCCCAAAATCCTAAAATGTA
*
49710714 TAAGATTCAACTTCCTACCATGCCACAATTTGTATAGAGTTTTCGATTCTACCTTATTTGGCGA-
261 TACGATTCAACTTCCTACCATGCCACAATTTGTATAGAGTTTTCGATTCTACCTTATTTGGC-AC
49710778 ATCATTCAGAATA
325 ATCATTCAGAATA
49710791 ATGCATCAGG
Statistics
Matches: 3257, Mismatches: 218, Indels: 31
0.93 0.06 0.01
Matches are distributed among these distances:
625 198 0.06
626 97 0.03
627 145 0.04
628 306 0.09
629 146 0.04
630 20 0.01
631 292 0.09
632 793 0.24
633 1258 0.39
634 2 0.00
ACGTcount: A:0.30, C:0.22, G:0.16, T:0.32
Consensus pattern (633 bp):
ATGCATCAGGTATACATGTCCATATTTGGAATAGTCATTGATAAAGGTTACATAATACTCGTAAC
CACCTCTTTTCTAGAGCTTGGAATCAACACTCTACATCGCTTCGTCATATGTGAGCAAGGCATCA
TCTTCCTGTTCAGCAGACTCAGTGTTAAAAACACTTCTGCTAGATTGGAAGAACTCCAGCCTATG
TGAGTCCGACTTTCTTGCATCTTTATCCAATACGTGGGTCGGACATCCCAAAATCCTAAAATGTA
TACGATTCAACTTCCTACCATGCCACAATTTGTATAGAGTTTTCGATTCTACCTTATTTGGCACA
TCATTCAGAATATAACAAGTCGTTTGTACAACGCATCCCCAAAAAGAGGTTGACAACTTCAAATA
ACTTAATATCGAATATACCATGTCTAACAATGTTCGATTTCTTCTCTCTGCTGTGCCATTCTGTT
GTGGAGTGCCCGACACGGTTAATTGGGATAGAATCTCATTCTCTATGAGGTGCCTTAAGAACTCA
TCAGATAAATATGCCCCACCTCGACCAGACCGAAGTGCCTTTATGGGTAAACGTAGTTGTTTCTA
CACTTCCACACGAAACTTTTTGAATGTATCAAAAGTATCACTCTTGCG
Found at i:49711069 original size:337 final size:337
Alignment explanation
Indices: 49710454--49711127 Score: 1143
Period size: 337 Copynumber: 2.0 Consensus size: 337
49710444 CACTCTTACG
*
49710454 ATGCATCAGGTATACATGTCCCTATTTGGAATAGTCATTGATAAAGGTTACATAATACTCGTAAC
1 ATGCATCAGGTATACATGTCCATATTTGGAATAGTCATTGATAAAGGTTACATAATACTCGTAAC
* * * *
49710519 CACCTCTTTTCTAGAGCTTGGAATCAACACTCTACATCACTTCGTCATATTTGAGCAAGGCATCA
66 CACCACTTTTCTAGAGCTTGGAATCAACACTCTACATCACTTCGTCATATGTCAGCAAGACATCA
*
49710584 TCTTCCTGTTCAGCAGACTCAGTGTTAAAAACACTTCTGCTAGATGGGAAGAACTCCAGCCTATG
131 TCTTCCTATTCAGCAGACTCAGTGTTAAAAACACTTCTGCTAGATGGGAAGAACTCCAGCCTATG
* * * *
49710649 TGAGTCTGACTTTCTTGCATCTTTATCCAGTACGTCTGTCGGACATCCCAAAATCCTAAAATGTA
196 TGAGTCCGACTTTCTTGCATCTTTATCCAATACGTCGGTCGGACACCCCAAAATCCTAAAATGTA
49710714 TAAGATTCAACTTCCTACCATGCCACAATTTGTATAGAGTTTTCGATTCTACCTTATTTGGCGA-
261 TAAGATTCAACTTCCTACCATGCCACAATTTGTATAGAGTTTTCGATTCTACCTTATTTGGC-AC
49710778 ATCATTCAGAATA
325 ATCATTCAGAATA
*
49710791 ATGCATCAGGTATACATGTCCATATTTGGAGTAGTCATTGATAAAGGTTACATAATACTCGTAAC
1 ATGCATCAGGTATACATGTCCATATTTGGAATAGTCATTGATAAAGGTTACATAATACTCGTAAC
* * *
49710856 CACCACTTTTTTAGAGCTTGGAATCAACACTCTACATCGCTTCGTCATATGTCAGTAAGACATCA
66 CACCACTTTTCTAGAGCTTGGAATCAACACTCTACATCACTTCGTCATATGTCAGCAAGACATCA
* * *
49710921 TCTTCCTATTCAGTAGACTCAGTGTTAAAAACACTTCTGTTAGATTGGAAGAACTCCAGCCTATG
131 TCTTCCTATTCAGCAGACTCAGTGTTAAAAACACTTCTGCTAGATGGGAAGAACTCCAGCCTATG
* *
49710986 TGAGTCCGACTTTCTTGCATCTTTATCCAATATGTGGGTCGGACACCCCAAAATCCTAAAATGTA
196 TGAGTCCGACTTTCTTGCATCTTTATCCAATACGTCGGTCGGACACCCCAAAATCCTAAAATGTA
* *
49711051 TACGATTCAACTTCCTACCATGCTACAATTTGTATAGAGTTTTCGATTCTACCTTATTTGGCACA
261 TAAGATTCAACTTCCTACCATGCCACAATTTGTATAGAGTTTTCGATTCTACCTTATTTGGCACA
49711116 TCATTCAGAATA
326 TCATTCAGAATA
49711128 TAACAAGTTG
Statistics
Matches: 315, Mismatches: 21, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
336 1 0.00
337 314 1.00
ACGTcount: A:0.29, C:0.22, G:0.16, T:0.33
Consensus pattern (337 bp):
ATGCATCAGGTATACATGTCCATATTTGGAATAGTCATTGATAAAGGTTACATAATACTCGTAAC
CACCACTTTTCTAGAGCTTGGAATCAACACTCTACATCACTTCGTCATATGTCAGCAAGACATCA
TCTTCCTATTCAGCAGACTCAGTGTTAAAAACACTTCTGCTAGATGGGAAGAACTCCAGCCTATG
TGAGTCCGACTTTCTTGCATCTTTATCCAATACGTCGGTCGGACACCCCAAAATCCTAAAATGTA
TAAGATTCAACTTCCTACCATGCCACAATTTGTATAGAGTTTTCGATTCTACCTTATTTGGCACA
TCATTCAGAATA
Found at i:49711754 original size:970 final size:969
Alignment explanation
Indices: 49709822--49711758 Score: 3387
Period size: 970 Copynumber: 2.0 Consensus size: 969
49709812 CACTCTTGCG
49709822 ATGCATCAGGTATACATGTCCATATTTGGAATAGTCATTGATAAAGGTACATAATACTCATAACC
1 ATGCATCAGGTATACATGTCCATATTTGGAATAGTCATTGATAAAGGTACATAATACTCATAACC
* * *
49709887 ACCTCTTTTCTAGAGCTTGGAATCAACACTGTACATCGCTTCGTCATATGTGAGTAAGACATCAT
66 ACCACTTTTCTAGAGCTTGGAATCAACACTCTACATCGCTTCGTCATATGTCAGTAAGACATCAT
49709952 CTTCCTATTCAACAGACTCAGTGTTAAAAACACTTCTGTTAGATTGGAAGAACTCCAGCCTATGT
131 CTTCCTATTCAACAGACTCAGTGTTAAAAACACTTCTGTTAGATTGGAAGAACTCCAGCCTATGT
* *
49710017 GAGTCCGACTTTCTTGCATCTTTATCCAATACGTGGGTTGGACATCCCAAAATCCTAAAATGTAT
196 GAGTCCGACTTTCTTGCATCTTTATCCAATACGTGGGTCGGACACCCCAAAATCCTAAAATGTAT
49710082 ACGATTCAACTTCCTACCATGCCACAATTTCTATAGAGTTTTCGATTCTACCTTATTTGGCACAT
261 ACGATTCAACTTCCTACCATGCCACAATTTCTATAGAGTTTTCGATTCTACCTTATTTGGCACAT
49710147 CATTCAGAATATAACAAGTCATTTGTACAACGCATCCCCAAAAAGAGGTTGACAACTTCAAATAA
326 CATTCAGAATATAACAAGTCATTTGTACAACGCATCCCCAAAAAGAGGTTGACAACTTCAAATAA
* *
49710212 CTTAATATCCAATATACCATGTCTAACAATGTTCGATTTCTTCTCTCTGCTGTGCCATTTTGTTG
391 CTTAATATCCAATATACCATGTCTAACAATGTTCGATTTCTTCTCTCTGCTGTGCCATTCTATTG
49710277 TGGAGTGCCCAACACGGTTAATTGGGATAGAATCTCATTCTCTATGAGGTGCCTTAAGAATGCAT
456 TGGAGTGCCCAACACGGTTAATTGGGATAGAATCTCATTCTCTATGAGGTGCCTTAAGAATGCAT
* *
49710342 CAGATAAATATGCCCCACCTCGACCAGACCGAAGTGCCTTTATGGGTAAACGTAGTTGTTTCTAC
521 CAAATAAATATGCCCCACCTCGACCAGACCGAAGTGCCTTTATGGGTAAACATAGTTGTTTCTAC
*
49710407 ACTTCCACACGAAACTTTTTGAATGTATCAAAAGTTTCACTCTTACGATGCATCAGGTATACATG
586 ACTTCCACACGAAACTTTTTGAATGTATCAAAAGTATCACTCTTACGATGCATCAGGTATACATG
* * * *
49710472 TCCCTATTTGGAATAGTCATTGATAAAGGTTACATAATACTCGTAACCACCTCTTTTCTAGAGCT
651 TCCATATTTGGAATAGTCACTGATAAAGGTTACATAATACTCGTAACCACATCCTTTCTAGAGCT
* * *
49710537 TGGAATCAACACTCTACATCACTTCGTCATATTTGAGCAAGGCATCATCTTCCTGTTCAGCAGAC
716 TCGAATCAACACTCTACATCACTTCGTCATATGTGAGAAAGGCATCATCTTCCTGTTCAGCAGAC
*
49710602 TCAGTGTTAAAAACACTTCTGCTAGATGGGAAGAACTCCAGCCTATGTGAGTCTGACTTTCTTGC
781 TCAGTGTTAAAAACACTTCTGCTAGATGGGAAGAACTCCAGCCTATGTGAGTCCGACTTTCTTGC
* * *
49710667 ATCTTTATCCAGTACGTCTGTCGGACATCCCAAAATCCTAAAATGTATAAGATTCAACTTCCTAC
846 ATCTTTATCCAATACGTCGGTCGGACATCCCAAAATCCTAAAATGTATAAGATGCAACTTCCTAC
49710732 CATGCCACAATTTGTATAGAGTTTTCGATTCTACCTTATTTGGCGAATCATTCAGAATA
911 CATGCCACAATTTGTATAGAGTTTTCGATTCTACCTTATTTGGCGAATCATTCAGAATA
* *
49710791 ATGCATCAGGTATACATGTCCATATTTGGAGTAGTCATTGATAAAGGTTACATAATACTCGTAAC
1 ATGCATCAGGTATACATGTCCATATTTGGAATAGTCATTGATAAAGG-TACATAATACTCATAAC
*
49710856 CACCACTTTTTTAGAGCTTGGAATCAACACTCTACATCGCTTCGTCATATGTCAGTAAGACATCA
65 CACCACTTTTCTAGAGCTTGGAATCAACACTCTACATCGCTTCGTCATATGTCAGTAAGACATCA
**
49710921 TCTTCCTATTCAGTAGACTCAGTGTTAAAAACACTTCTGTTAGATTGGAAGAACTCCAGCCTATG
130 TCTTCCTATTCAACAGACTCAGTGTTAAAAACACTTCTGTTAGATTGGAAGAACTCCAGCCTATG
*
49710986 TGAGTCCGACTTTCTTGCATCTTTATCCAATATGTGGGTCGGACACCCCAAAATCCTAAAATGTA
195 TGAGTCCGACTTTCTTGCATCTTTATCCAATACGTGGGTCGGACACCCCAAAATCCTAAAATGTA
* *
49711051 TACGATTCAACTTCCTACCATGCTACAATTTGTATAGAGTTTTCGATTCTACCTTATTTGGCACA
260 TACGATTCAACTTCCTACCATGCCACAATTTCTATAGAGTTTTCGATTCTACCTTATTTGGCACA
** *
49711116 TCATTCAGAATATAACAAGTTGTTTGTACAACGCATCCCTAAAAAGAGGTTGACAACTTCAAATA
325 TCATTCAGAATATAACAAGTCATTTGTACAACGCATCCCCAAAAAGAGGTTGACAACTTCAAATA
*
49711181 ACTTAATATCGAATATACCATGTCTAACAATGTTCGATTTCTTCTCTCTGCTGTGCCATTCTATT
390 ACTTAATATCCAATATACCATGTCTAACAATGTTCGATTTCTTCTCTCTGCTGTGCCATTCTATT
*
49711246 GTGGAGTGCCCGACACGGTTAATTGGGATAGAATCTCATTCTCTATGAGGTGCCTTAAGAACT-C
455 GTGGAGTGCCCAACACGGTTAATTGGGATAGAATCTCATTCTCTATGAGGTGCCTTAAGAA-TGC
* * * *
49711310 TTCAAATAAATATGCCCCACTTTGACCAGACCGAAGTGCCTTTCTGGGTAAACATAGTTGTTTCT
519 ATCAAATAAATATGCCCCACCTCGACCAGACCGAAGTGCCTTTATGGGTAAACATAGTTGTTTCT
*
49711375 ACACTTTCACACGAAACTTTTTGAATGTATCAAAAGTATCACTC-TAGCGATGCATCAGGTATAC
584 ACACTTCCACACGAAACTTTTTGAATGTATCAAAAGTATCACTCTTA-CGATGCATCAGGTATAC
49711439 ATGTCCATATTTGGAATAGTCACTGATAAAGGTTACATAATACTCGTAACCACATCCTTTCTAGA
648 ATGTCCATATTTGGAATAGTCACTGATAAAGGTTACATAATACTCGTAACCACATCCTTTCTAGA
* *
49711504 GCTTCGAATGAACGCTCTACATCACTTCGTCATATGTGAGAAAGGCATCATCTTCCTGTTCAGCA
713 GCTTCGAATCAACACTCTACATCACTTCGTCATATGTGAGAAAGGCATCATCTTCCTGTTCAGCA
*
49711569 GACTCAGTGTTAAAAACACTTCTGCTAGATTGGAAGAACTCCAGCC-ATTGTGAGTCCGACTTTC
778 GACTCAGTGTTAAAAACACTTCTGCTAGATGGGAAGAACTCCAGCCTA-TGTGAGTCCGACTTTC
* *
49711633 TTGCATCTTTATCCAATACGTGGGTCGGACATCCCAAAATCCTAAACTGTATAAGATGCAACTTC
842 TTGCATCTTTATCCAATACGTCGGTCGGACATCCCAAAATCCTAAAATGTATAAGATGCAACTTC
* *
49711698 CTACCATGCCACAATTTGTTTAGAGTTTTCGATTCTTCCTTATTTGGC-ACATCATTCAGAA
907 CTACCATGCCACAATTTGTATAGAGTTTTCGATTCTACCTTATTTGGCGA-ATCATTCAGAA
49711759 CATAACAAGT
Statistics
Matches: 917, Mismatches: 46, Indels: 9
0.94 0.05 0.01
Matches are distributed among these distances:
969 50 0.05
970 866 0.94
971 1 0.00
ACGTcount: A:0.30, C:0.22, G:0.16, T:0.32
Consensus pattern (969 bp):
ATGCATCAGGTATACATGTCCATATTTGGAATAGTCATTGATAAAGGTACATAATACTCATAACC
ACCACTTTTCTAGAGCTTGGAATCAACACTCTACATCGCTTCGTCATATGTCAGTAAGACATCAT
CTTCCTATTCAACAGACTCAGTGTTAAAAACACTTCTGTTAGATTGGAAGAACTCCAGCCTATGT
GAGTCCGACTTTCTTGCATCTTTATCCAATACGTGGGTCGGACACCCCAAAATCCTAAAATGTAT
ACGATTCAACTTCCTACCATGCCACAATTTCTATAGAGTTTTCGATTCTACCTTATTTGGCACAT
CATTCAGAATATAACAAGTCATTTGTACAACGCATCCCCAAAAAGAGGTTGACAACTTCAAATAA
CTTAATATCCAATATACCATGTCTAACAATGTTCGATTTCTTCTCTCTGCTGTGCCATTCTATTG
TGGAGTGCCCAACACGGTTAATTGGGATAGAATCTCATTCTCTATGAGGTGCCTTAAGAATGCAT
CAAATAAATATGCCCCACCTCGACCAGACCGAAGTGCCTTTATGGGTAAACATAGTTGTTTCTAC
ACTTCCACACGAAACTTTTTGAATGTATCAAAAGTATCACTCTTACGATGCATCAGGTATACATG
TCCATATTTGGAATAGTCACTGATAAAGGTTACATAATACTCGTAACCACATCCTTTCTAGAGCT
TCGAATCAACACTCTACATCACTTCGTCATATGTGAGAAAGGCATCATCTTCCTGTTCAGCAGAC
TCAGTGTTAAAAACACTTCTGCTAGATGGGAAGAACTCCAGCCTATGTGAGTCCGACTTTCTTGC
ATCTTTATCCAATACGTCGGTCGGACATCCCAAAATCCTAAAATGTATAAGATGCAACTTCCTAC
CATGCCACAATTTGTATAGAGTTTTCGATTCTACCTTATTTGGCGAATCATTCAGAATA
Found at i:49716161 original size:630 final size:633
Alignment explanation
Indices: 49710791--49716183 Score: 8856
Period size: 633 Copynumber: 8.5 Consensus size: 633
49710781 ATTCAGAATA
*
49710791 ATGCATCAGGTATACATGTCCATATTTGGAGTAGTCATTGATAAAGGTTACATAATACTCGTAAC
1 ATGCATCAGGTATACATGTCCATATTTGGAATAGTCATTGATAAAGGTTACATAATACTCGTAAC
* * * * *
49710856 CACCACTTTTTTAGAGCTTGGAATCAACACTCTACATCGCTTCGTCATATGTCAGTAAGACATCA
66 CACCTCTTTTCTAGAGCTTGGAATCAACACTCTACATCGCTTCGTCATATGTGAGCAAGGCATCA
* * *
49710921 TCTTCCTATTCAGTAGACTCAGTGTTAAAAACACTTCTGTTAGATTGGAAGAACTCCAGCCTATG
131 TCTTCCTGTTCAGCAGACTCAGTGTTAAAAACACTTCTGCTAGATTGGAAGAACTCCAGCCTATG
* *
49710986 TGAGTCCGACTTTCTTGCATCTTTATCCAATATGTGGGTCGGACACCCCAAAATCCTAAAATGTA
196 TGAGTCCGACTTTCTTGCATCTTTATCCAATACGTGGGTCGGACATCCCAAAATCCTAAAATGTA
*
49711051 TACGATTCAACTTCCTACCATGCTACAATTTGTATAGAGTTTTCGATTCTACCTTATTTGGCACA
261 TACGATTCAACTTCCTACCATGCCACAATTTGTATAGAGTTTTCGATTCTACCTTATTTGGCACA
* * *
49711116 TCATTCAGAATATAACAAGTTGTTTGTACAACGCATCCCTAAAAAGAGGTTGACAACTTCAAATA
326 TCATTCAGAATATAACAAGTCGTTTGTACAACGTATCCCCAAAAAGAGGTTGACAACTTCAAATA
*
49711181 ACTTAATATCGAATATACCATGTCTAACAATGTTCGATTTCTTCTCTCTGCTGTGCCATTCTATT
391 ACTTAATATCGAATATACCATGTCTAACAATGTTCGATTTCTTCTCTCTGCTGTGCCATTCTGTT
*
49711246 GTGGAGTGCCCGACACGGTTAATTGGGATAGAATCTCATTCTCTATGAGGTGCCTTAAGAACTCT
456 GTGGAGTGCCCGACACGGTTAATTGGGATAGAATCTCATTCTCTATGAGGTGCCTTAAGAACTCA
* * * * *
49711311 TCAAATAAATATGCCCCACTTTGACCAGACCGAAGTGCCTTTCTGGGTAAACATAGTTGTTTCTA
521 TCAGATAAATATGCCCCACCTCGACCAGACCGAAGTGCCTTTATGGGTAAACGTAGTTGTTTCTA
* *
49711376 CACTTTCACACGAAACTTTTTGAATGTATCAAAAGTATCACTCTAGCG
586 CACTTCCACACGAAACTTTTTGAATGTATCAAAAGTATCACTCTTGCG
*
49711424 ATGCATCAGGTATACATGTCCATATTTGGAATAGTCACTGATAAAGGTTACATAATACTCGTAAC
1 ATGCATCAGGTATACATGTCCATATTTGGAATAGTCATTGATAAAGGTTACATAATACTCGTAAC
* * * * * * *
49711489 CACATCCTTTCTAGAGCTTCGAATGAACGCTCTACATCACTTCGTCATATGTGAGAAAGGCATCA
66 CACCTCTTTTCTAGAGCTTGGAATCAACACTCTACATCGCTTCGTCATATGTGAGCAAGGCATCA
49711554 TCTTCCTGTTCAGCAGACTCAGTGTTAAAAACACTTCTGCTAGATTGGAAGAACTCCAGCC-ATT
131 TCTTCCTGTTCAGCAGACTCAGTGTTAAAAACACTTCTGCTAGATTGGAAGAACTCCAGCCTA-T
*
49711618 GTGAGTCCGACTTTCTTGCATCTTTATCCAATACGTGGGTCGGACATCCCAAAATCCTAAACTGT
195 GTGAGTCCGACTTTCTTGCATCTTTATCCAATACGTGGGTCGGACATCCCAAAATCCTAAAATGT
* * * *
49711683 ATAAGATGCAACTTCCTACCATGCCACAATTTGTTTAGAGTTTTCGATTCTTCCTTATTTGGCAC
260 ATACGATTCAACTTCCTACCATGCCACAATTTGTATAGAGTTTTCGATTCTACCTTATTTGGCAC
*
49711748 ATCATTCAGAACATAACAAGTCGTTTGTACAACGTATCCCCAAAAAGAGGTTGACAACTTCAAAT
325 ATCATTCAGAATATAACAAGTCGTTTGTACAACGTATCCCCAAAAAGAGGTTGACAACTTCAAAT
* * *
49711813 AACTTAATATAGAATATACCATGTCTAACAATGATCGATTTCTTCTCCCTGCTGTGCCATTCTGT
390 AACTTAATATCGAATATACCATGTCTAACAATGTTCGATTTCTTCTCTCTGCTGTGCCATTCTGT
* *
49711878 TGTGGAGTGCCTGACACGGTTAATTGGGATAGAATCTAATTCTCTATGAGGTGCCTTAAGAACTC
455 TGTGGAGTGCCCGACACGGTTAATTGGGATAGAATCTCATTCTCTATGAGGTGCCTTAAGAACTC
* * * * * * *
49711943 ATCAGATAAATATACTCCAGCTCTACCAGACCGAAGTTCCTTAATGGGAAAACGTAGTTGTTT-T
520 ATCAGATAAATATGCCCCACCTCGACCAGACCGAAGTGCCTTTATGGGTAAACGTAGTTGTTTCT
* *
49712007 ACACTTCCACACGAAACTTTTTGAATGTATCAAAAGTTTCACTCTTACG
585 ACACTTCCACACGAAACTTTTTGAATGTATCAAAAGTATCACTCTTGCG
* *
49712056 ATGCATCAGGTATGCATGTCCATATTTGGAATAGTCATTGATACAGGTTACATAATACTCGTAAC
1 ATGCATCAGGTATACATGTCCATATTTGGAATAGTCATTGATAAAGGTTACATAATACTCGTAAC
* ** *
49712121 CACCTCTTTTCTAGAGCTTCGAATCAACACTCTACATCGCTTCGTCATATGTGAGTGAGGGATCA
66 CACCTCTTTTCTAGAGCTTGGAATCAACACTCTACATCGCTTCGTCATATGTGAGCAAGGCATCA
* * * *
49712186 TCTTCCTATTCAGTAGACTCAGTGTTAAAAACACTTCTGTTAGATTGGAAGAAGTCCAGCCTATG
131 TCTTCCTGTTCAGCAGACTCAGTGTTAAAAACACTTCTGCTAGATTGGAAGAACTCCAGCCTATG
* * * *
49712251 TGAGTCTGACTTTCTTACATCTTTATCTAATACGTGGGTCGGATATCCCAAAATCCTAAAATGTA
196 TGAGTCCGACTTTCTTGCATCTTTATCCAATACGTGGGTCGGACATCCCAAAATCCTAAAATGTA
49712316 TACGATTCAACTTCCTACCATGCCACAATTTGTATAGAGTTTTCGATTCTACCTTATTTGGCACA
261 TACGATTCAACTTCCTACCATGCCACAATTTGTATAGAGTTTTCGATTCTACCTTATTTGGCACA
*
49712381 TCATTCAGAATATAACAAGTCGTTTGTACAACGTA-CCCCTAAAAAGAGGTTGAAAACTTCAAAT
326 TCATTCAGAATATAACAAGTCGTTTGTACAACGTATCCCC-AAAAAGAGGTTGACAACTTCAAAT
*
49712445 AACTTAATATCGAATATACCATGTCTAACAATGTTCGATTTCTTCCCTCTGCTGTGCCATTCTGT
390 AACTTAATATCGAATATACCATGTCTAACAATGTTCGATTTCTTCTCTCTGCTGTGCCATTCTGT
* *
49712510 TGTGGAGTGCCCGACAGGGTTAATTGGGATAGAATCTCATTCTCTATGAGGTGCCTTAAGAACTT
455 TGTGGAGTGCCCGACACGGTTAATTGGGATAGAATCTCATTCTCTATGAGGTGCCTTAAGAACTC
* *
49712575 ATCAGATAAATATGCCCCACCTCAACCAGACCGAAGTGCCTTTATGGGTAAACGTAGTTGCTTCT
520 ATCAGATAAATATGCCCCACCTCGACCAGACCGAAGTGCCTTTATGGGTAAACGTAGTTGTTTCT
* * **
49712640 ACACTTCCAAATGAAACACTTTGAATGTATC-AAAGTATCACTCTTGCG
585 ACACTTCCACACGAAACTTTTTGAATGTATCAAAAGTATCACTCTTGCG
49712688 ATGCATCAGGTATACATGTCCATATTTGGAATAGTCATTGATAAAGGTTACATAATACTCGTAAC
1 ATGCATCAGGTATACATGTCCATATTTGGAATAGTCATTGATAAAGGTTACATAATACTCGTAAC
**
49712753 CACCTCTTTTCTAGAGCTTGGAATCAACACTCTACATCGCTTCGTTGTATGTGAGCAAGGCATCA
66 CACCTCTTTTCTAGAGCTTGGAATCAACACTCTACATCGCTTCGTCATATGTGAGCAAGGCATCA
* * *
49712818 TCTTCCTGTTTAGCAGACTCAGAGTTAAAAACACTTCTGCTATATTGGAAGAACTCCAGCCTATG
131 TCTTCCTGTTCAGCAGACTCAGTGTTAAAAACACTTCTGCTAGATTGGAAGAACTCCAGCCTATG
* * * * *
49712883 TGAGTCAGACTTTCTTTCATCTTTATCTAATACGTGGGTCGGACATTCCAAAATCCTAAAATATA
196 TGAGTCCGACTTTCTTGCATCTTTATCCAATACGTGGGTCGGACATCCCAAAATCCTAAAATGTA
* * * * *
49712948 TAAGATTCAACTTCCTACTATTCCACAATTTGTATAGAGTTTTCGATTCTGCCTTATTTGGAACA
261 TACGATTCAACTTCCTACCATGCCACAATTTGTATAGAGTTTTCGATTCTACCTTATTTGGCACA
*
49713013 TCATTCAGAATATAACAAGTCGTTTGTACAACGCATCCCCAAAAAGAGGTTGACAACTTCAAATA
326 TCATTCAGAATATAACAAGTCGTTTGTACAACGTATCCCCAAAAAGAGGTTGACAACTTCAAATA
* * *
49713078 ACTTAATATCGAATATACCATGTCTAACTATGTTCAATTTCTTCTCTCTGCCGTGCCATTCTGTT
391 ACTTAATATCGAATATACCATGTCTAACAATGTTCGATTTCTTCTCTCTGCTGTGCCATTCTGTT
* *
49713143 GTGGAGTGGCCGACACGGTTAATTGGGATAGAATCTCATTCTCTATGAGGTGCCTTAAGAACACA
456 GTGGAGTGCCCGACACGGTTAATTGGGATAGAATCTCATTCTCTATGAGGTGCCTTAAGAACTCA
*
49713208 TCAGATAAATATGCCCCACCTCGACCAGACCGAAGTGCCTTTATGGGTAAACTTAGTTGTTTCTA
521 TCAGATAAATATGCCCCACCTCGACCAGACCGAAGTGCCTTTATGGGTAAACGTAGTTGTTTCTA
* * *
49713273 CACTTTCACACGAAAC-TTTTGAATGTATCAAAAGCATCACTCTTGCA
586 CACTTCCACACGAAACTTTTTGAATGTATCAAAAGTATCACTCTTGCG
49713320 ATGCATCAGGTATACATGTCCATATTTGGAATAGTCATTGATAAAGGTTACATAATACTCGTAAC
1 ATGCATCAGGTATACATGTCCATATTTGGAATAGTCATTGATAAAGGTTACATAATACTCGTAAC
* * * **
49713385 CACATCTTTTCTAGAGCTTCGAATGAATGCTCTACATCGCTTCGTCATATGTGAGCAAGGCATCA
66 CACCTCTTTTCTAGAGCTTGGAATCAACACTCTACATCGCTTCGTCATATGTGAGCAAGGCATCA
*
49713450 TCTTCCTGTTCAGCAGACTCAGAGTTAAAAACACTTCTGCTAGATTGGAAGAACTCCAGCCTATG
131 TCTTCCTGTTCAGCAGACTCAGTGTTAAAAACACTTCTGCTAGATTGGAAGAACTCCAGCCTATG
* *
49713515 TGAGTCTGACTTTCCTGCATCTTTATCCAATACGTGGGTCGGACATCCCAAAATCCTAAAATGTA
196 TGAGTCCGACTTTCTTGCATCTTTATCCAATACGTGGGTCGGACATCCCAAAATCCTAAAATGTA
*
49713580 TACGATTCAACTTCCTACCATGCCACAATTTCTATAGAGTTTTCGATTCTACCTTATTTGGCACA
261 TACGATTCAACTTCCTACCATGCCACAATTTGTATAGAGTTTTCGATTCTACCTTATTTGGCACA
*
49713645 TCATTCAGAATATAACAAGTCGTTTGTACAACGTATCCCCAAAAACAGGTTGACAACTTCAAATA
326 TCATTCAGAATATAACAAGTCGTTTGTACAACGTATCCCCAAAAAGAGGTTGACAACTTCAAATA
* * *
49713710 ACTTAATATCGAATATACAATGTCTATCAATGTTCAATTTCTTCTCTCTGCTGTGCCATTCTGTT
391 ACTTAATATCGAATATACCATGTCTAACAATGTTCGATTTCTTCTCTCTGCTGTGCCATTCTGTT
*
49713775 GTGGAGTGCCCGACTCGGTTAATTGGGATAGAATCTCATTCTCTATGAGGTGCCTTAAGAACTCA
456 GTGGAGTGCCCGACACGGTTAATTGGGATAGAATCTCATTCTCTATGAGGTGCCTTAAGAACTCA
* *
49713840 TCAGATAAATATGCCCCACCTTGACCCGACCGAAGTGCCTTTATGGGTAAACGTAGTTGTTTCTA
521 TCAGATAAATATGCCCCACCTCGACCAGACCGAAGTGCCTTTATGGGTAAACGTAGTTGTTTCTA
* * *
49713905 CACTTCCACAAGAAACTTTTTGAATTTATCAAAAGTTTCACTCTTGCG
586 CACTTCCACACGAAACTTTTTGAATGTATCAAAAGTATCACTCTTGCG
* *
49713953 ATGCATCAGGTATACATGTCCATATTTGGAATAGTCATTGATAAAGGTAACATAATACTCATAAC
1 ATGCATCAGGTATACATGTCCATATTTGGAATAGTCATTGATAAAGGTTACATAATACTCGTAAC
* * *
49714018 CACCTCTTTTCTAGAGCTTGGAATCAACACTGTACATCGCTTCGTCATATGTGAGTAAGACATCA
66 CACCTCTTTTCTAGAGCTTGGAATCAACACTCTACATCGCTTCGTCATATGTGAGCAAGGCATCA
* * * *
49714083 TCTTCCTATTCAACAGACTCAGTGTTAAAAACACTTCTGTTAGATTGGAAGAACTCCAGACTATG
131 TCTTCCTGTTCAGCAGACTCAGTGTTAAAAACACTTCTGCTAGATTGGAAGAACTCCAGCCTATG
*
49714148 TGAGTCCGACTTTCTTGCATCTTTATCCAATACGTGGGTTGGACATCCCAAAATCCTAAAATGTA
196 TGAGTCCGACTTTCTTGCATCTTTATCCAATACGTGGGTCGGACATCCCAAAATCCTAAAATGTA
* *
49714213 TACGATTCTACTTCCTACCATGCCACAATTTCTATAGAGTTTTCGATTCTACCTTATTTGGCACA
261 TACGATTCAACTTCCTACCATGCCACAATTTGTATAGAGTTTTCGATTCTACCTTATTTGGCACA
*
49714278 TCATTCAGAATATAACAAGTCATTTGTACAACGTATCCCCAAAAAGAGGTTGACAACTTCAAATA
326 TCATTCAGAATATAACAAGTCGTTTGTACAACGTATCCCCAAAAAGAGGTTGACAACTTCAAATA
* *
49714343 ACTTAATATCCAATATACCATGTCTAACAATGTTCGATTTCTTCTCTCTGCTATGCCATTCTGTT
391 ACTTAATATCGAATATACCATGTCTAACAATGTTCGATTTCTTCTCTCTGCTGTGCCATTCTGTT
49714408 GTCGG-GTGCCCGACACGGTTAATTGGGATAGAATCTCATTCTCTATGAGGTGCCTTAAGAACTC
456 GT-GGAGTGCCCGACACGGTTAATTGGGATAGAATCTCATTCTCTATGAGGTGCCTTAAGAACTC
* *
49714472 ATCAGATAAATATGCCCCACCTCGACCAAACCGAAGTGCCTTTATGGGTAAACATAGTTGTTTCT
520 ATCAGATAAATATGCCCCACCTCGACCAGACCGAAGTGCCTTTATGGGTAAACGTAGTTGTTTCT
* *
49714537 ACCCTTCCACACGAAACTTTTTGAATGTATCAAAAGTATCACTCTTGCA
585 ACACTTCCACACGAAACTTTTTGAATGTATCAAAAGTATCACTCTTGCG
* *
49714586 ATGCATTAGGTATACATGT-CAGTATTTGGAATAGTCATTGATAAATGTTACATAATACTCGTAA
1 ATGCATCAGGTATACATGTCCA-TATTTGGAATAGTCATTGATAAAGGTTACATAATACTCGTAA
* * * *
49714650 GCACCTCATTTCTAGAGCTTGGATTCAACACTCTACATCGCTTCGTTATATGTGAGCAAGGCATC
65 CCACCTCTTTTCTAGAGCTTGGAATCAACACTCTACATCGCTTCGTCATATGTGAGCAAGGCATC
* *
49714715 ATCTTCCTGTTCAGCAGACTCAGTGTTAAAAACACTT-TCGCTACAGTGGAAGAACTCCAGCCTA
130 ATCTTCCTGTTCAGCAGACTCAGTGTTAAAAACACTTCT-GCTAGATTGGAAGAACTCCAGCCTA
*
49714779 TGTGAGTCTGACTTTCTTGCATCTTTATCCAATACGTGGGTCGGACATCCCAAAATCCTAAAATG
194 TGTGAGTCCGACTTTCTTGCATCTTTATCCAATACGTGGGTCGGACATCCCAAAATCCTAAAATG
* * *
49714844 TATAAGATCCAACTTCCTACCATGCCACAATTTGTATAGAGTTTTCGATTCTTCCTTATTTGGCA
259 TATACGATTCAACTTCCTACCATGCCACAATTTGTATAGAGTTTTCGATTCTACCTTATTTGGCA
* * *
49714909 CATCGTTCAGAATATAACAAGTCGTTTGTACAACGTATCCCAAAAAAGAGGTTGACAACTTTAAA
324 CATCATTCAGAATATAACAAGTCGTTTGTACAACGTATCCCCAAAAAGAGGTTGACAACTTCAAA
* * *
49714974 TAACTTAATATCGAATAGACCATGTCTAACAATGATCGATTTCTTCTCTTTGCTGTGCCATTCTG
389 TAACTTAATATCGAATATACCATGTCTAACAATGTTCGATTTCTTCTCTCTGCTGTGCCATTCTG
* * *
49715039 TTGTAGAGTGCCCGACACGGTTATTTGGGATAGAATCTCATTCTCTATGAGGTGCCTTAAGAAAT
454 TTGTGGAGTGCCCGACACGGTTAATTGGGATAGAATCTCATTCTCTATGAGGTGCCTTAAGAACT
* * *
49715104 CAT-ACGATAAATATGCCCCACCTCGACCAGAACGAAGTTCCTTTATGGGTAGACGTAGTTGTTT
519 CATCA-GATAAATATGCCCCACCTCGACCAGACCGAAGTGCCTTTATGGGTAAACGTAGTTGTTT
* * * *
49715168 GTACACTTCCACACGAAACTTTTTGAATTTATCAAAAGTTTCAATCTTGCG
583 CTACACTTCCACACGAAACTTTTTGAATGTATCAAAAGTATCACTCTTGCG
** * * *
49715219 ATTAATAAGGTATACATGTCCATATTTGGAATAGTCATTGATAAAGGTTACATAATACTCATAAG
1 ATGCATCAGGTATACATGTCCATATTTGGAATAGTCATTGATAAAGGTTACATAATACTCGTAAC
* * *
49715284 CACCTCTTTTCTAGAGCTTGGAATCAACACTCTACATCACTTCGTCATATGT-AGTAAGGGATCA
66 CACCTCTTTTCTAGAGCTTGGAATCAACACTCTACATCGCTTCGTCATATGTGAGCAAGGCATCA
* * *
49715348 TCATCCTATTCAGCA-ACTCAGTGTTAAAAACACTTCTGTTAGATTGGAAGAACTCCAGCCTATG
131 TCTTCCTGTTCAGCAGACTCAGTGTTAAAAACACTTCTGCTAGATTGGAAGAACTCCAGCCTATG
49715412 TGAGTCCGACTTTCTTGCATCTTTATCCAATACGTGGGTCGGACATCCCAAAATCCTAAAATGTA
196 TGAGTCCGACTTTCTTGCATCTTTATCCAATACGTGGGTCGGACATCCCAAAATCCTAAAATGTA
49715477 TACGATTCAACTTCCTACCATGCCACAATTTGTATAGAGTTTTCGATTCTACCTTATTTGGCACA
261 TACGATTCAACTTCCTACCATGCCACAATTTGTATAGAGTTTTCGATTCTACCTTATTTGGCACA
* *
49715542 TCATTCAGAATAT-ACAAGTCGATTGTACAACATATCCCCAAAAAGAGGTTGACAACTTCAAATA
326 TCATTCAGAATATAACAAGTCGTTTGTACAACGTATCCCCAAAAAGAGGTTGACAACTTCAAATA
* *
49715606 ACTTAATATCGAATATACCATGTCT-ACAATGTTCGAATTCTTCTCTCTGCTGTGCCATTTTGTT
391 ACTTAATATCGAATATACCATGTCTAACAATGTTCGATTTCTTCTCTCTGCTGTGCCATTCTGTT
*
49715670 GTGGAGTGCCCAACACGGTTAATTGGGATAGAATCTCATTCTCTATGAGGTGCCTTAAGAA-TGC
456 GTGGAGTGCCCGACACGGTTAATTGGGATAGAATCTCATTCTCTATGAGGTGCCTTAAGAACT-C
49715734 ATCAGATAAATATGCCCCACCTCGACCAGACCGAAGTGCCTTTATGGGTAAACGTAGTTGTTTCT
520 ATCAGATAAATATGCCCCACCTCGACCAGACCGAAGTGCCTTTATGGGTAAACGTAGTTGTTTCT
* *
49715799 ACACTTCCACACGAAACTTTTTGAATGTATCAAAAGTTTCACTCTTACG
585 ACACTTCCACACGAAACTTTTTGAATGTATCAAAAGTATCACTCTTGCG
*
49715848 ATGCATCAGGTATACATGTCCCTATTTGGAATAGTCATTGATAAAGGTTAC-TAATACTCGTAAC
1 ATGCATCAGGTATACATGTCCATATTTGGAATAGTCATTGATAAAGGTTACATAATACTCGTAAC
* *
49715912 CACCTCTTTTCTAGAGCTTGGAATCAACACTCTACATCACTTCGTCATATTTGAGCAAGGCATCA
66 CACCTCTTTTCTAGAGCTTGGAATCAACACTCTACATCGCTTCGTCATATGTGAGCAAGGCATCA
*
49715977 TCTTCCTGTTCAGCAGACTCAGTGTTAAAAACACTTCTGCTAGATGGGAAGAACTCCAGCCTATG
131 TCTTCCTGTTCAGCAGACTCAGTGTTAAAAACACTTCTGCTAGATTGGAAGAACTCCAGCCTATG
* * **
49716042 TGAGTCTGACTTTCTTGCATCTTTATCCAGTACGTCTGTCGGACATCCCAAAATCCTAAAATGTA
196 TGAGTCCGACTTTCTTGCATCTTTATCCAATACGTGGGTCGGACATCCCAAAATCCTAAAATGTA
*
49716107 TAAGATTCAACTTCCTACCATGCCACAATTTGTATAGAGTTTTCGATTCTACCTTATTTGGCGA-
261 TACGATTCAACTTCCTACCATGCCACAATTTGTATAGAGTTTTCGATTCTACCTTATTTGGC-AC
49716171 ATCATTCAGAATA
325 ATCATTCAGAATA
49716184 ATGCATCAGG
Statistics
Matches: 4418, Mismatches: 323, Indels: 41
0.92 0.07 0.01
Matches are distributed among these distances:
628 63 0.01
629 269 0.06
630 254 0.06
631 199 0.05
632 1760 0.40
633 1869 0.42
634 4 0.00
ACGTcount: A:0.30, C:0.22, G:0.16, T:0.32
Consensus pattern (633 bp):
ATGCATCAGGTATACATGTCCATATTTGGAATAGTCATTGATAAAGGTTACATAATACTCGTAAC
CACCTCTTTTCTAGAGCTTGGAATCAACACTCTACATCGCTTCGTCATATGTGAGCAAGGCATCA
TCTTCCTGTTCAGCAGACTCAGTGTTAAAAACACTTCTGCTAGATTGGAAGAACTCCAGCCTATG
TGAGTCCGACTTTCTTGCATCTTTATCCAATACGTGGGTCGGACATCCCAAAATCCTAAAATGTA
TACGATTCAACTTCCTACCATGCCACAATTTGTATAGAGTTTTCGATTCTACCTTATTTGGCACA
TCATTCAGAATATAACAAGTCGTTTGTACAACGTATCCCCAAAAAGAGGTTGACAACTTCAAATA
ACTTAATATCGAATATACCATGTCTAACAATGTTCGATTTCTTCTCTCTGCTGTGCCATTCTGTT
GTGGAGTGCCCGACACGGTTAATTGGGATAGAATCTCATTCTCTATGAGGTGCCTTAAGAACTCA
TCAGATAAATATGCCCCACCTCGACCAGACCGAAGTGCCTTTATGGGTAAACGTAGTTGTTTCTA
CACTTCCACACGAAACTTTTTGAATGTATCAAAAGTATCACTCTTGCG
Found at i:49716461 original size:336 final size:336
Alignment explanation
Indices: 49715848--49716519 Score: 1132
Period size: 336 Copynumber: 2.0 Consensus size: 336
49715838 CACTCTTACG
*
49715848 ATGCATCAGGTATACATGTCCCTATTTGGAATAGTCATTGATAAAGGTTACTAATACTCGTAACC
1 ATGCATCAGGTATACATGTCCATATTTGGAATAGTCATTGATAAAGGTTACTAATACTCGTAACC
* * * *
49715913 ACCTCTTTTCTAGAGCTTGGAATCAACACTCTACATCACTTCGTCATATTTGAGCAAGGCATCAT
66 ACCACTTTTCTAGAGCTTGGAATCAACACTCTACATCACTTCGTCATATGTCAGCAAGACATCAT
*
49715978 CTTCCTGTTCAGCAGACTCAGTGTTAAAAACACTTCTGCTAGATGGGAAGAACTCCAGCCTATGT
131 CTTCCTATTCAGCAGACTCAGTGTTAAAAACACTTCTGCTAGATGGGAAGAACTCCAGCCTATGT
* * * *
49716043 GAGTCTGACTTTCTTGCATCTTTATCCAGTACGTCTGTCGGACATCCCAAAATCCTAAAATGTAT
196 GAGTCCGACTTTCTTGCATCTTTATCCAATACGTCGGTCGGACACCCCAAAATCCTAAAATGTAT
49716108 AAGATTCAACTTCCTACCATGCCACAATTTGTATAGAGTTTTCGATTCTACCTTATTTGGCGA-A
261 AAGATTCAACTTCCTACCATGCCACAATTTGTATAGAGTTTTCGATTCTACCTTATTTGGC-ACA
49716172 TCATTCAGAATA
325 TCATTCAGAATA
*
49716184 ATGCATCAGGTATACATGTCCATATTTGGAGTAGTCATTGATAAAGGTTACATAATACTCGTAAC
1 ATGCATCAGGTATACATGTCCATATTTGGAATAGTCATTGATAAAGGTTAC-TAATACTCGTAAC
* *
49716249 CACCACTTTT-TAGAGCTTGGAATCAACACTCTACATCGCTTCGTCATATGTCAGTAAGACATCA
65 CACCACTTTTCTAGAGCTTGGAATCAACACTCTACATCACTTCGTCATATGTCAGCAAGACATCA
* * *
49716313 TCTTCCTATTCAGTAGACTCAGTGTTAAAAACACTTCTGTTAGATTGGAAGAACTCCAGCCTATG
130 TCTTCCTATTCAGCAGACTCAGTGTTAAAAACACTTCTGCTAGATGGGAAGAACTCCAGCCTATG
* *
49716378 TGAGTCCGACTTTCTTGCATCTTTATCCAATATGTGGGTCGGACACCCCAAAATCCTAAAATGTA
195 TGAGTCCGACTTTCTTGCATCTTTATCCAATACGTCGGTCGGACACCCCAAAATCCTAAAATGTA
* *
49716443 TACGATTCAACTTCCTACCATGCTACAATTTGTATAGAGTTTTCGATTCTACCTTATTTGGCACA
260 TAAGATTCAACTTCCTACCATGCCACAATTTGTATAGAGTTTTCGATTCTACCTTATTTGGCACA
49716508 TCATTCAGAATA
325 TCATTCAGAATA
49716520 TAACAAGTTG
Statistics
Matches: 314, Mismatches: 20, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
335 1 0.00
336 291 0.93
337 22 0.07
ACGTcount: A:0.29, C:0.22, G:0.16, T:0.33
Consensus pattern (336 bp):
ATGCATCAGGTATACATGTCCATATTTGGAATAGTCATTGATAAAGGTTACTAATACTCGTAACC
ACCACTTTTCTAGAGCTTGGAATCAACACTCTACATCACTTCGTCATATGTCAGCAAGACATCAT
CTTCCTATTCAGCAGACTCAGTGTTAAAAACACTTCTGCTAGATGGGAAGAACTCCAGCCTATGT
GAGTCCGACTTTCTTGCATCTTTATCCAATACGTCGGTCGGACACCCCAAAATCCTAAAATGTAT
AAGATTCAACTTCCTACCATGCCACAATTTGTATAGAGTTTTCGATTCTACCTTATTTGGCACAT
CATTCAGAATA
Done.