Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr03 135709677
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 135709677
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 163 of 438
Found at i:49718376 original size:633 final size:633
Alignment explanation
Indices: 49716184--49720681 Score: 7286
Period size: 633 Copynumber: 7.1 Consensus size: 633
49716174 ATTCAGAATA
*
49716184 ATGCATCAGGTATACATGTCCATATTTGGAGTAGTCATTGATAAAGGTTACATAATACTCGTAAC
1 ATGCATCAGGTATACATGTCCATATTTGGAATAGTCATTGATAAAGGTTACATAATACTCGTAAC
* *
49716249 CACCACTTTT-TAGAGCTTGGAATCAACACTCTACATCGCTTCGTCATATGTCAGTAAGACATCA
66 CACCTCTTTTCTAGAGCTTGGAATCAACACTCTACATCGCTTCGTCATATGTGAGTAAGACATCA
* * *
49716313 TCTTCCTATTCAGTAGACTCAGTGTTAAAAACACTTCTGTTAGATTGGAAGAACTCCAGCCTATG
131 TCTTCCTGTTCAGCAGACTCAGTGTTAAAAACACTTCTGCTAGATTGGAAGAACTCCAGCCTATG
* * *
49716378 TGAGTCCGACTTTCTTGCATCTTTATCCAATATGTGGGTCGGACACCCCAAAATCCTAAAATGTA
196 TGAGTCCGACTTTCTTGTATCTTTATCCAATACGTGGGTCGGACATCCCAAAATCCTAAAATGTA
* * *
49716443 TACGATTCAACTTCCTACCATGCTACAATTTGTATAGAGTTTTCGATTCTACCTTATTTGGCACA
261 TAAGATTCAACTTCCTACCATGCCACAATTTGTATAGAGTTTTCGATTCTGCCTTATTTGGCACA
* * *
49716508 TCATTCAGAATATAACAAGTTGTTTGTACAACGCATCCCTAAAAAGAGGTTGACAACTTCAAATA
326 TCATTCAGAATATAACAAGTCGTTTGTACAACGTATCCCCAAAAAGAGGTTGACAACTTCAAATA
*
49716573 ACTTAATATCGAATATACCATGTCTAACAATGTTCGATTTCTTCTCTCTGCTGTGCCATTCTATT
391 ACTTAATATCGAATATACCATGTCTAACAATGTTCGATTTCTTCTCTCTGCTGTGCCATTCTGTT
*
49716638 GTGGAGTGCCCGACACGGTTAATTGGGATAGAATCTCATTCTCTATGAGGTGCCTTAAGAACTCT
456 GTGGAGTGCCCGACACGGTTAATTGGGATAGAATCTCATTCTCTATGAGGTGCCTTAAGAACTCA
* * * * *
49716703 TCAAATAAATATGCCCCACTTTGACCAGACCGAAGTGCCTTTCTGGGTAAACATAGTTGTTTCTA
521 TCAGATAAATATGCCCCACCTCGACCAGACCGAAGTGCCTTTATGGGTAAACGTAGTTGTTTCTA
* * * *
49716768 CACTTTCACACGAAACTTTTTGAATGTATCAAAAGTATCACTCTAGCG
586 CACTTCCACACGAAACTTTTTGAATTTATCAAAAGTTTCACTCTTGCG
*
49716816 ATGCATCAGGTATACATGTCCATATTTGGAATAGTCACTGATAAAGGTTACATAATACTCGTAAC
1 ATGCATCAGGTATACATGTCCATATTTGGAATAGTCATTGATAAAGGTTACATAATACTCGTAAC
* * * * * * * *
49716881 CACATCCTTTCTAGAGCTTCGAATGAACGCTCTACATCACTTCGTCATATGTGAGAAAGGCATCA
66 CACCTCTTTTCTAGAGCTTGGAATCAACACTCTACATCGCTTCGTCATATGTGAGTAAGACATCA
49716946 TCTTCCTGTTCAGCAGACTCAGTGTTAAAAACACTTCTGCTAGATTGGAAGAACTCCAGCC-ATT
131 TCTTCCTGTTCAGCAGACTCAGTGTTAAAAACACTTCTGCTAGATTGGAAGAACTCCAGCCTA-T
* *
49717010 GTGAGTCCGACTTTCTTGCATCTTTATCCAATACGTGGGTCGGACATCCCAAAATCCTAAACTGT
195 GTGAGTCCGACTTTCTTGTATCTTTATCCAATACGTGGGTCGGACATCCCAAAATCCTAAAATGT
* * * *
49717075 ATAAGATGCAACTTCCTACCATGCCACAATTTGTTTAGAGTTTTTGATTCTTCCTTATTTGGCAC
260 ATAAGATTCAACTTCCTACCATGCCACAATTTGTATAGAGTTTTCGATTCTGCCTTATTTGGCAC
*
49717140 ATCATTCAGAACATAACAAGTCGTTTGTACAACGTATCCCCAAAAAGAGGTTGACAACTTCAAAT
325 ATCATTCAGAATATAACAAGTCGTTTGTACAACGTATCCCCAAAAAGAGGTTGACAACTTCAAAT
* * *
49717205 AACTTAATATAGAATATACCATGTCTAACAATGATCGATTTCTTCTCCCTGCTGTGCCATTCTGT
390 AACTTAATATCGAATATACCATGTCTAACAATGTTCGATTTCTTCTCTCTGCTGTGCCATTCTGT
* * *
49717270 TGTGGAGTGCCTGACACGGTTAATTGGGATAGAATCTAATTCTCTATGAGGTGCCTTAAGAACTT
455 TGTGGAGTGCCCGACACGGTTAATTGGGATAGAATCTCATTCTCTATGAGGTGCCTTAAGAACTC
* *
49717335 ATCAGATAAATATTCCCCACCTCGACCAGACCGAAGTGCCTTTATGGGTAAACGTAGTTGCTTCT
520 ATCAGATAAATATGCCCCACCTCGACCAGACCGAAGTGCCTTTATGGGTAAACGTAGTTGTTTCT
* * ** * *
49717400 ACACTTCCAAATGAAACACTTTGAATGTATC-AAAGTATCACTCTTGCG
585 ACACTTCCACACGAAACTTTTTGAATTTATCAAAAGTTTCACTCTTGCG
*
49717448 ATGCATCAGGTATACATGTCCATATTTGGAATAGTCATTGATAAAGGTTACATAATACTCGTACC
1 ATGCATCAGGTATACATGTCCATATTTGGAATAGTCATTGATAAAGGTTACATAATACTCGTAAC
** * *
49717513 CACCTCTTTTCTAGAGCTTGGAATCAACACTCTACATCGCTTCGTTGTATGTGAGCAAGGCATCA
66 CACCTCTTTTCTAGAGCTTGGAATCAACACTCTACATCGCTTCGTCATATGTGAGTAAGACATCA
* * *
49717578 TCTTCCTGTTTAGCAGACTCAGAGTTAAAAACACTTCTGCTATATTGGAAGAACTCCAGCCTATG
131 TCTTCCTGTTCAGCAGACTCAGTGTTAAAAACACTTCTGCTAGATTGGAAGAACTCCAGCCTATG
* * * * *
49717643 TGAGTCAGACTTTCTT-TCATCTTCATCTAATACGTGGGTCGGACATTCCAAAATCCTAAAATAT
196 TGAGTCCGACTTTCTTGT-ATCTTTATCCAATACGTGGGTCGGACATCCCAAAATCCTAAAATGT
* * *
49717707 ATAAGATTCAACTTCCTACTATTCCACAATTTGTATAGAGTTTTCGATTCTGCCTTATTTGGAAC
260 ATAAGATTCAACTTCCTACCATGCCACAATTTGTATAGAGTTTTCGATTCTGCCTTATTTGGCAC
49717772 ATCATTCAGAATATAACAAGTCGTTTG-ATCAACGTATCCCCAAAAAGAGGTTGACAACTTCAAA
325 ATCATTCAGAATATAACAAGTCGTTTGTA-CAACGTATCCCCAAAAAGAGGTTGACAACTTCAAA
*
49717836 TAACTTAATATCGAATATACCATGTCTAACAATGTTCGATTCCTTCTCTCTGCTGTGCCATTCTG
389 TAACTTAATATCGAATATACCATGTCTAACAATGTTCGATTTCTTCTCTCTGCTGTGCCATTCTG
* * * * *
49717901 TTGTAGAGTCCCCGACATGGATAATTGGGATAGAATCTTATTCTCTATGAGGTGCCTTAAGAACT
454 TTGTGGAGTGCCCGACACGGTTAATTGGGATAGAATCTCATTCTCTATGAGGTGCCTTAAGAACT
* * * * *
49717966 CATGAAATAAATATGCCCCACCTTGACCAGACCGAAGTGTCTTTATGGGTAAACGTAGTTTTTTC
519 CATCAGATAAATATGCCCCACCTCGACCAGACCGAAGTGCCTTTATGGGTAAACGTAGTTGTTTC
** * *
49718031 TACACTTTTACATGAATCTTTTTGAATTTATCAAAAGTTTCACTCTTGCG
584 TACACTTCCACACGAAACTTTTTGAATTTATCAAAAGTTTCACTCTTGCG
* *
49718081 ATGCATCAGGTATACATGTCCATATTTGGAATACTCATTGATAAAGGTTACATAATACTCGTACC
1 ATGCATCAGGTATACATGTCCATATTTGGAATAGTCATTGATAAAGGTTACATAATACTCGTAAC
* * * **
49718146 CACCTCTTTTCTAGAGCTTAGAATCAAGACTCTACATCGCTTCGTCATATATGAGTAAGGGATCA
66 CACCTCTTTTCTAGAGCTTGGAATCAACACTCTACATCGCTTCGTCATATGTGAGTAAGACATCA
* * *
49718211 TCTTCCTATTCGGTAGACTCAGTGTTAAAAACACTTCTGCTAGATTGGAAGAACTCCAGCCTATG
131 TCTTCCTGTTCAGCAGACTCAGTGTTAAAAACACTTCTGCTAGATTGGAAGAACTCCAGCCTATG
* *
49718276 TGAGTTCGACTTTCTTGTATCTTTATCCAATACGTGGGTCGGACATCCCAAAATCCTAAAACGTA
196 TGAGTCCGACTTTCTTGTATCTTTATCCAATACGTGGGTCGGACATCCCAAAATCCTAAAATGTA
* ** * * *
49718341 TAAGATTCAACTTTCTACCATGCCACAATTTGTATATTGTTTTCGATTCTGCGTTATTCGACACA
261 TAAGATTCAACTTCCTACCATGCCACAATTTGTATAGAGTTTTCGATTCTGCCTTATTTGGCACA
*
49718406 TCATTCAGAATATAACAAGTCGTTTGTACAACGTATCCCTAAAAAGAGGTTGACAACTTCAAATA
326 TCATTCAGAATATAACAAGTCGTTTGTACAACGTATCCCCAAAAAGAGGTTGACAACTTCAAATA
* *
49718471 ACTTAATATCGAATATATCATGTCTAACAATGTTCGATTTCTTCGCTCTGCTGTGCCATTCTGTT
391 ACTTAATATCGAATATACCATGTCTAACAATGTTCGATTTCTTCTCTCTGCTGTGCCATTCTGTT
*
49718536 GTGGAGTGCCCGACACGGTTAATTGGGATAGAATCTCATTCTCTACGAGGTGCCTTAAGAACTCA
456 GTGGAGTGCCCGACACGGTTAATTGGGATAGAATCTCATTCTCTATGAGGTGCCTTAAGAACTCA
* * * *
49718601 TCAGATAAATATGCCACACCTGGACCAGACTGAAGTGCCTTTATGGATAAACGTAGTTGTTTCTA
521 TCAGATAAATATGCCCCACCTCGACCAGACCGAAGTGCCTTTATGGGTAAACGTAGTTGTTTCTA
*
49718666 CACTTCCACACGAAACTTTTTGAATTTATCAAAATTTTCACTCTTGCG
586 CACTTCCACACGAAACTTTTTGAATTTATCAAAAGTTTCACTCTTGCG
* *
49718714 ATGCATCAGGTATACATCTCCATATTTGGAATAGTCATTGATAAAGGTTAGATAATACTCGTAAC
1 ATGCATCAGGTATACATGTCCATATTTGGAATAGTCATTGATAAAGGTTACATAATACTCGTAAC
* * *
49718779 CAACTCTTTTTTAGAGCTTGGAATCAACACTCTACATCGCTTCGTCATATGTGAGTAAGCCATCA
66 CACCTCTTTTCTAGAGCTTGGAATCAACACTCTACATCGCTTCGTCATATGTGAGTAAGACATCA
* **
49718844 TCTTCCTATTCAGCAGACTCAGTGTTAAAAACACTTCTATTAGATTGGAAGAACTCCAGCCTATG
131 TCTTCCTGTTCAGCAGACTCAGTGTTAAAAACACTTCTGCTAGATTGGAAGAACTCCAGCCTATG
* * *
49718909 TGAGTCCGACTTTCTTGCATCTTTATCTAATACGTGGGTCGGACATTCCAAAATCCTAAAATGTA
196 TGAGTCCGACTTTCTTGTATCTTTATCCAATACGTGGGTCGGACATCCCAAAATCCTAAAATGTA
* * **
49718974 TACGATTCAACTTCCTACCATGCCACAATTTGTATAGAGTTTTCAATTCAACCTTATTTGGCACA
261 TAAGATTCAACTTCCTACCATGCCACAATTTGTATAGAGTTTTCGATTCTGCCTTATTTGGCACA
* *
49719039 TCATTCAGAATATAACAATTCGTTTGTACAACGTATCCCCAAAAAGAGGTTGACAACTTCAAAAA
326 TCATTCAGAATATAACAAGTCGTTTGTACAACGTATCCCCAAAAAGAGGTTGACAACTTCAAATA
*
49719104 ACTTAATATCGAATATACCATGTCTAACAATGTTCGATTTCTTCTCTCTGCTTTGCCATTCTGTT
391 ACTTAATATCGAATATACCATGTCTAACAATGTTCGATTTCTTCTCTCTGCTGTGCCATTCTGTT
*
49719169 GTAGAGTGCCCGACACGGTTAATTGGGATAGAATCTCATTCTCTATGAGGTGCCTTAAGAACTCA
456 GTGGAGTGCCCGACACGGTTAATTGGGATAGAATCTCATTCTCTATGAGGTGCCTTAAGAACTCA
* * *
49719234 TCAGATTAATATGCCCCACATTGACCAGACCGAAGTGCCTTTATGGGTAAACGTAGTTGTTTCTA
521 TCAGATAAATATGCCCCACCTCGACCAGACCGAAGTGCCTTTATGGGTAAACGTAGTTGTTTCTA
49719299 CACTTCCACACGAAACTTTTTGAATTTATCAAAAGTTTCACTCTTGCG
586 CACTTCCACACGAAACTTTTTGAATTTATCAAAAGTTTCACTCTTGCG
*
49719347 ATGCATCAGGTATACATGTCCATATTTGGAATAATCATTGATAAAGGTTACATAATACTCGTAAC
1 ATGCATCAGGTATACATGTCCATATTTGGAATAGTCATTGATAAAGGTTACATAATACTCGTAAC
* * *
49719412 CACCTCTTTTCTAGAGCTTGGAATCAACACTCTACATCGCTTCATCATATGCGAGTAAGACATGA
66 CACCTCTTTTCTAGAGCTTGGAATCAACACTCTACATCGCTTCGTCATATGTGAGTAAGACATCA
* *
49719477 TCTTCCTGTTCGGCAGACTCTGTGTTAAAAACACTTCTGCTAGATTGGAAGAACTCCAGCCTATG
131 TCTTCCTGTTCAGCAGACTCAGTGTTAAAAACACTTCTGCTAGATTGGAAGAACTCCAGCCTATG
* * * *
49719542 TGAGTCCGACTTTCTTGTATCTGTATCCAATACATGGGTCAGACATCTCAAAATCCTAAAATGTA
196 TGAGTCCGACTTTCTTGTATCTTTATCCAATACGTGGGTCGGACATCCCAAAATCCTAAAATGTA
49719607 TAAGATTCAACTTCCTACCATGCCACAATTTGTATAGAGTTTTCGATTCTGCCTTATTTGGCACA
261 TAAGATTCAACTTCCTACCATGCCACAATTTGTATAGAGTTTTCGATTCTGCCTTATTTGGCACA
* * *
49719672 TTATTCAGAATATAACAAGTCGTTTGTACAACGTATCCCGAAAAAGAGGTTAACAACTTCAAATA
326 TCATTCAGAATATAACAAGTCGTTTGTACAACGTATCCCCAAAAAGAGGTTGACAACTTCAAATA
* * *
49719737 ACTTAATATCGAATATACCATGTCTAGCAATGTTCAATTTCTTCTCTTTGCTGTGCCATTCTGTT
391 ACTTAATATCGAATATACCATGTCTAACAATGTTCGATTTCTTCTCTCTGCTGTGCCATTCTGTT
** * * *
49719802 GTGGAGTGCCTAACACTGTTAATTGGGATAGAATCTCATTCTTTATGAGGTCCCTTAAGAACTCA
456 GTGGAGTGCCCGACACGGTTAATTGGGATAGAATCTCATTCTCTATGAGGTGCCTTAAGAACTCA
* * *
49719867 TCAGATAAATATGCCCCACCTCAACCAGACTGAAGTGCCTTTATGGGTAGACGTAGTTGTTTCTA
521 TCAGATAAATATGCCCCACCTCGACCAGACCGAAGTGCCTTTATGGGTAAACGTAGTTGTTTCTA
49719932 CACTTCCACACGAAACTTTTTGAATTTATCAAAAGTTTCACTCTTGCG
586 CACTTCCACACGAAACTTTTTGAATTTATCAAAAGTTTCACTCTTGCG
* *
49719980 ATGCATCAGGTATACATGTCCCTATTTGGAATAATCATTGATAAAGGTTACATAATACTCGTAAC
1 ATGCATCAGGTATACATGTCCATATTTGGAATAGTCATTGATAAAGGTTACATAATACTCGTAAC
* * *
49720045 CACCTCTTTTCTAGAGCTTGGAATCAACACTCTACATCACTTCCTCATATGCGAGTAAGACATCA
66 CACCTCTTTTCTAGAGCTTGGAATCAACACTCTACATCGCTTCGTCATATGTGAGTAAGACATCA
* * *
49720110 TCTTCCTGTTCGGCAGACTCTGTGTTAAAAACACTTCTACTAGATTGGAAGAACTCCAGCCTATG
131 TCTTCCTGTTCAGCAGACTCAGTGTTAAAAACACTTCTGCTAGATTGGAAGAACTCCAGCCTATG
* * * *
49720175 TGAGTCCGACTTTCTTGTATCTGTATCCAATACATGGGTCAGACATCTCAAAATCCT-AAATGTA
196 TGAGTCCGACTTTCTTGTATCTTTATCCAATACGTGGGTCGGACATCCCAAAATCCTAAAATGTA
*
49720239 TAAGATTCAACTTCCTACCATGCCACAATTTGTATAGAGTTTTCGATTCTTCCTTATTTGGCACA
261 TAAGATTCAACTTCCTACCATGCCACAATTTGTATAGAGTTTTCGATTCTGCCTTATTTGGCACA
* *
49720304 TCATTCAAAATATAACAAGACGTTTGTACAACGTATCCCCAAAAAGAGGTTGACAACTTCAAATA
326 TCATTCAGAATATAACAAGTCGTTTGTACAACGTATCCCCAAAAAGAGGTTGACAACTTCAAATA
* *
49720369 ACTTAATAT--AATATACCATGTCTAACAATGTTCGATTTCTTTTTTCTGCTGTGCCATTCTGTT
391 ACTTAATATCGAATATACCATGTCTAACAATGTTCGATTTCTTCTCTCTGCTGTGCCATTCTGTT
* **
49720432 GTGGAGAGCCCGACATTGTT-ATTGGGATAGAATCTCATTCTCTATGAGGTGCCTTAAGAACTCA
456 GTGGAGTGCCCGACACGGTTAATTGGGATAGAATCTCATTCTCTATGAGGTGCCTTAAGAACTCA
49720496 TCAGATAAATATGCCCCACCTCGACCAGACCGAAGTGCCTTTATGGGTAAACGTAGTTGTTTCTA
521 TCAGATAAATATGCCCCACCTCGACCAGACCGAAGTGCCTTTATGGGTAAACGTAGTTGTTTCTA
49720561 CACTTCCACACGAAACTTTTTGAATTTATCAAAAGTTTCACTCTTGCG
586 CACTTCCACACGAAACTTTTTGAATTTATCAAAAGTTTCACTCTTGCG
49720609 ATGCATCAGGTATACATGTCCATATTTGGAATAGTCATTGATAAAGGTTACATAATACTCGTAAC
1 ATGCATCAGGTATACATGTCCATATTTGGAATAGTCATTGATAAAGGTTACATAATACTCGTAAC
49720674 CACCTCTT
66 CACCTCTT
49720682 ACACTATCGC
Statistics
Matches: 3583, Mismatches: 275, Indels: 19
0.92 0.07 0.00
Matches are distributed among these distances:
629 223 0.06
630 65 0.02
631 1 0.00
632 783 0.22
633 2509 0.70
634 2 0.00
ACGTcount: A:0.30, C:0.22, G:0.16, T:0.33
Consensus pattern (633 bp):
ATGCATCAGGTATACATGTCCATATTTGGAATAGTCATTGATAAAGGTTACATAATACTCGTAAC
CACCTCTTTTCTAGAGCTTGGAATCAACACTCTACATCGCTTCGTCATATGTGAGTAAGACATCA
TCTTCCTGTTCAGCAGACTCAGTGTTAAAAACACTTCTGCTAGATTGGAAGAACTCCAGCCTATG
TGAGTCCGACTTTCTTGTATCTTTATCCAATACGTGGGTCGGACATCCCAAAATCCTAAAATGTA
TAAGATTCAACTTCCTACCATGCCACAATTTGTATAGAGTTTTCGATTCTGCCTTATTTGGCACA
TCATTCAGAATATAACAAGTCGTTTGTACAACGTATCCCCAAAAAGAGGTTGACAACTTCAAATA
ACTTAATATCGAATATACCATGTCTAACAATGTTCGATTTCTTCTCTCTGCTGTGCCATTCTGTT
GTGGAGTGCCCGACACGGTTAATTGGGATAGAATCTCATTCTCTATGAGGTGCCTTAAGAACTCA
TCAGATAAATATGCCCCACCTCGACCAGACCGAAGTGCCTTTATGGGTAAACGTAGTTGTTTCTA
CACTTCCACACGAAACTTTTTGAATTTATCAAAAGTTTCACTCTTGCG
Found at i:49721945 original size:17 final size:17
Alignment explanation
Indices: 49721923--49721955 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
49721913 TCTAGAATTG
49721923 CTTTAGCATTCTTACAA
1 CTTTAGCATTCTTACAA
*
49721940 CTTTAGTATTCTTACA
1 CTTTAGCATTCTTACA
49721956 GCTCTCTAGT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.27, C:0.21, G:0.06, T:0.45
Consensus pattern (17 bp):
CTTTAGCATTCTTACAA
Found at i:49724333 original size:20 final size:21
Alignment explanation
Indices: 49724286--49724333 Score: 62
Period size: 20 Copynumber: 2.3 Consensus size: 21
49724276 CGTACATGAG
49724286 AGAAACAAAAACAAAGAAAGAA
1 AGAAA-AAAAACAAAGAAAGAA
* *
49724308 A-AAAAAAAAAAAAGAAAGGA
1 AGAAAAAAAACAAAGAAAGAA
49724328 AGAAAA
1 AGAAAA
49724334 GTGTTCATCC
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
20 15 0.65
21 7 0.30
22 1 0.04
ACGTcount: A:0.81, C:0.04, G:0.15, T:0.00
Consensus pattern (21 bp):
AGAAAAAAAACAAAGAAAGAA
Found at i:49725619 original size:40 final size:40
Alignment explanation
Indices: 49725560--49725666 Score: 124
Period size: 40 Copynumber: 2.7 Consensus size: 40
49725550 CAATTGAATG
* * * *
49725560 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGAAACT
* * * **
49725600 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGAAACT
*
49725640 ACATCCGGGCTAAGACCCGAAGGCATT
1 ATATCCGGGCTAAGACCCGAAGGCATT
49725667 CGTGCAAGTC
Statistics
Matches: 55, Mismatches: 12, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
40 55 1.00
ACGTcount: A:0.29, C:0.22, G:0.25, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGAAACT
Found at i:49725686 original size:40 final size:39
Alignment explanation
Indices: 49725601--49725727 Score: 141
Period size: 40 Copynumber: 3.2 Consensus size: 39
49725591 CTGGAAATTA
* * *
49725601 TATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTG-AC
1 TATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTGTTC
49725639 TACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTTC
1 T--ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-GTTC
* * *
49725681 TATCCGGGCTAAGACCCGAGGGCATTCGTGCATGTGGTTA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-GTTC
49725721 TATCCGG
1 TATCCGG
49725728 TTGTATTCCG
Statistics
Matches: 77, Mismatches: 7, Indels: 8
0.84 0.08 0.09
Matches are distributed among these distances:
38 1 0.01
39 3 0.04
40 70 0.91
41 1 0.01
42 2 0.03
ACGTcount: A:0.23, C:0.24, G:0.29, T:0.24
Consensus pattern (39 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGTTC
Found at i:49733596 original size:40 final size:40
Alignment explanation
Indices: 49733537--49733643 Score: 124
Period size: 40 Copynumber: 2.7 Consensus size: 40
49733527 CAATTGAATG
* * * *
49733537 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGAAACT
* * * **
49733577 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGAAACT
*
49733617 ACATCCGGGCTAAGACCCGAAGGCATT
1 ATATCCGGGCTAAGACCCGAAGGCATT
49733644 CGTGCAAGTC
Statistics
Matches: 55, Mismatches: 12, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
40 55 1.00
ACGTcount: A:0.29, C:0.22, G:0.25, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGAAACT
Found at i:49733663 original size:40 final size:39
Alignment explanation
Indices: 49733578--49733704 Score: 141
Period size: 40 Copynumber: 3.2 Consensus size: 39
49733568 CTGGAAATTA
* * *
49733578 TATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTG-AC
1 TATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTGTTC
49733616 TACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTTC
1 T--ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-GTTC
* * *
49733658 TATCCGGGCTAAGACCCGAGGGCATTCGTGCATGTGGTTA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-GTTC
49733698 TATCCGG
1 TATCCGG
49733705 TTGTATTCCG
Statistics
Matches: 77, Mismatches: 7, Indels: 8
0.84 0.08 0.09
Matches are distributed among these distances:
38 1 0.01
39 3 0.04
40 70 0.91
41 1 0.01
42 2 0.03
ACGTcount: A:0.23, C:0.24, G:0.29, T:0.24
Consensus pattern (39 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGTTC
Found at i:49740837 original size:49 final size:49
Alignment explanation
Indices: 49740758--49741117 Score: 560
Period size: 49 Copynumber: 7.4 Consensus size: 49
49740748 ATCAAGATTC
* *
49740758 GTGAAAATGTATATATATGTGATGATGCCTAATGGCCGATGTGATGAAT
1 GTGAAAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
*
49740807 GTGAAAATGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
* *
49740856 GTGAAAATGTATATATATGTGATGAGGCCTAATGGCCGATGCGATGAAT
1 GTGAAAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
* *
49740905 GCGAAAATGTATGTATATGTGATAAGGCCTAATGGCCGAT-TGATGAAT
1 GTGAAAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
* * *
49740953 GTGAAAGTATATATATATGTGATAAGGCCTAATGGCCGATGTGGTGAAT
1 GTGAAAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
* * * *
49741002 GTGAAAGTATATGTATATGTGATAAGGCCTAATGGCCGATGTGGTGAAT
1 GTGAAAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
* *
49741051 GTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
*
49741100 GTGAAACTGTATATATAT
1 GTGAAAATGTATATATAT
49741118 ATATGTGGTA
Statistics
Matches: 290, Mismatches: 20, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
48 43 0.15
49 247 0.85
ACGTcount: A:0.33, C:0.09, G:0.28, T:0.31
Consensus pattern (49 bp):
GTGAAAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
Found at i:49740987 original size:195 final size:195
Alignment explanation
Indices: 49740758--49741117 Score: 585
Period size: 195 Copynumber: 1.8 Consensus size: 195
49740748 ATCAAGATTC
* * * *
49740758 GTGAAAATGTATATATATGTGATGATGCCTAATGGCCGATGTGATGAATGTGAAAATGTATGTAT
1 GTGAAAATATATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATATATGTAT
*
49740823 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATATATATGTGATGAGGCCTAA
66 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATATATATGTGATAAGGCCTAA
*
49740888 TGGCCGATGCGATGAATGCGAAAATGTATGTATATGTGATAAGGCCTAATGGCCGATTGATGAAT
131 TGGCCGATGCGATGAATGCGAAAATGTATATATATGTGATAAGGCCTAATGGCCGATTGATGAAT
* * *
49740953 GTGAAAGTATATATATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTATATGTAT
1 GTGAAAATATATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATATATGTAT
* * *
49741018 ATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAA
66 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATATATATGTGATAAGGCCTAA
* * *
49741083 TGGCCGATGTGATGAATGTGAAACTGTATATATAT
131 TGGCCGATGCGATGAATGCGAAAATGTATATATAT
49741118 ATATGTGGTA
Statistics
Matches: 150, Mismatches: 15, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
195 150 1.00
ACGTcount: A:0.33, C:0.09, G:0.28, T:0.31
Consensus pattern (195 bp):
GTGAAAATATATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATATATGTAT
ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATATATATGTGATAAGGCCTAA
TGGCCGATGCGATGAATGCGAAAATGTATATATATGTGATAAGGCCTAATGGCCGATTGATGAAT
Found at i:49741243 original size:37 final size:36
Alignment explanation
Indices: 49741188--49741274 Score: 147
Period size: 37 Copynumber: 2.3 Consensus size: 36
49741178 AACTTGGAAA
49741188 TATGTTCCGGGTGAGACCCGATGACTACGTGTGGAGAT
1 TATG-TCCGGGT-AGACCCGATGACTACGTGTGGAGAT
49741226 TATGTCCGGGTACGACCCGATGACTACGTGTGGAGAT
1 TATGTCCGGGTA-GACCCGATGACTACGTGTGGAGAT
49741263 TATGTCCGGGTA
1 TATGTCCGGGTA
49741275 AGACTTCGTA
Statistics
Matches: 48, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
36 1 0.02
37 43 0.90
38 4 0.08
ACGTcount: A:0.21, C:0.20, G:0.33, T:0.26
Consensus pattern (36 bp):
TATGTCCGGGTAGACCCGATGACTACGTGTGGAGAT
Found at i:49757024 original size:27 final size:28
Alignment explanation
Indices: 49756968--49757037 Score: 133
Period size: 27 Copynumber: 2.5 Consensus size: 28
49756958 AAATTTGTAC
49756968 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
49756996 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
49757023 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
49757038 GACTCACTAT
Statistics
Matches: 42, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
27 25 0.60
28 17 0.40
ACGTcount: A:0.29, C:0.13, G:0.27, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATTATAT
Found at i:49770864 original size:48 final size:48
Alignment explanation
Indices: 49770793--49770928 Score: 184
Period size: 48 Copynumber: 2.8 Consensus size: 48
49770783 GTGAATTGCT
* * * *
49770793 GATGCCATGTTCCAAGCATGGTCTTATACTGGCTCTCAT-GTCGAGGCC
1 GATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATAAT-GAGGCC
*
49770841 GATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATAATGTGGCC
1 GATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATAATGAGGCC
* * *
49770889 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATA
1 GATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATA
49770929 TCACCCAAAT
Statistics
Matches: 79, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
48 78 0.99
49 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.21, T:0.27
Consensus pattern (48 bp):
GATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATAATGAGGCC
Found at i:49778771 original size:26 final size:26
Alignment explanation
Indices: 49778715--49778791 Score: 75
Period size: 26 Copynumber: 2.9 Consensus size: 26
49778705 TCTCATCCCT
* * **
49778715 ATTTTACCTCTAGCAAAACTTTTGATG
1 ATTTTGCCTCTAGTAAAA-TTTTGACC
*
49778742 ATTTTAGCC-CTGGTAAAATTTTGACC
1 ATTTT-GCCTCTAGTAAAATTTTGACC
*
49778768 ATTTTGCCTTTAGTAAAATTTTGA
1 ATTTTGCCTCTAGTAAAATTTTGA
49778792 GAAAATATGT
Statistics
Matches: 41, Mismatches: 7, Indels: 5
0.77 0.13 0.09
Matches are distributed among these distances:
25 3 0.07
26 24 0.59
27 12 0.29
28 2 0.05
ACGTcount: A:0.29, C:0.16, G:0.13, T:0.43
Consensus pattern (26 bp):
ATTTTGCCTCTAGTAAAATTTTGACC
Found at i:49782930 original size:40 final size:39
Alignment explanation
Indices: 49782814--49782937 Score: 140
Period size: 40 Copynumber: 3.1 Consensus size: 39
49782804 TATAACCGGT
* * *
49782814 TAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGC
1 TAAGACCCGAAGGCATTTGTGCAAGTCG-TACATCCGGGC
* * * *
49782854 TAAGACCCGAAGGCATTCGTGCGAGTCATTCTATCCGGGC
1 TAAGACCCGAAGGCATTTGTGCAAGTCGTAC-ATCCGGGC
* *
49782894 TAAGACCCGAAGGCATTTGTGCAAATCGTGACATCCGGGT
1 TAAGACCCGAAGGCATTTGTGCAAGTCGT-ACATCCGGGC
49782934 TAAG
1 TAAG
49782938 TCCGTAGGCC
Statistics
Matches: 70, Mismatches: 12, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
39 2 0.03
40 67 0.96
41 1 0.01
ACGTcount: A:0.26, C:0.24, G:0.28, T:0.22
Consensus pattern (39 bp):
TAAGACCCGAAGGCATTTGTGCAAGTCGTACATCCGGGC
Found at i:49790953 original size:38 final size:41
Alignment explanation
Indices: 49790898--49791004 Score: 125
Period size: 38 Copynumber: 2.7 Consensus size: 41
49790888 GAAATTATAA
* *
49790898 CCGGGTTAAGACCCGAAGGCAATTGTGCTA-GTGC-TAC-AT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCGAGGT-CATACTAT
*
49790937 -CGGGCTAAGACCCGAAGGC-ATTCGTGCGAGGTCATTCTAT
1 CCGGGCTAAGACCCGAAGGCAATT-GTGCGAGGTCATACTAT
*
49790977 CCGGGCTAAGACCCGAAGGCATTTGTGC
1 CCGGGCTAAGACCCGAAGGCAATTGTGC
49791005 AAATCGTGAT
Statistics
Matches: 58, Mismatches: 4, Indels: 10
0.81 0.06 0.14
Matches are distributed among these distances:
37 3 0.05
38 24 0.41
39 4 0.07
40 2 0.03
41 23 0.40
42 2 0.03
ACGTcount: A:0.23, C:0.25, G:0.30, T:0.21
Consensus pattern (41 bp):
CCGGGCTAAGACCCGAAGGCAATTGTGCGAGGTCATACTAT
Found at i:49794951 original size:29 final size:29
Alignment explanation
Indices: 49794917--49795021 Score: 86
Period size: 29 Copynumber: 3.6 Consensus size: 29
49794907 TACTCGATTT
* * *
49794917 CGCACACTTAGTGCCATGCGATTTAAGCC
1 CGCACACTTAGTGCCATACCATTCAAGCC
** * * *
49794946 CGCACACACAGTGCCATACCCTTCGAGCT
1 CGCACACTTAGTGCCATACCATTCAAGCC
* * *
49794975 CGCACACTTAGTGCCATA-TATTTCCAGCA
1 CGCACACTTAGTGCCATACCA-TTCAAGCC
*
49795004 TGCACACTTAGTGCCATA
1 CGCACACTTAGTGCCATA
49795022 TATTTCCAGC
Statistics
Matches: 60, Mismatches: 15, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
29 60 1.00
ACGTcount: A:0.26, C:0.33, G:0.17, T:0.24
Consensus pattern (29 bp):
CGCACACTTAGTGCCATACCATTCAAGCC
Found at i:49795009 original size:58 final size:59
Alignment explanation
Indices: 49794955--49795076 Score: 178
Period size: 58 Copynumber: 2.1 Consensus size: 59
49794945 CCGCACACAC
* *
49794955 AGTGCCATACCCTTCGAGC-TCGCACACTTAGTGCCATATATTTCCAGCATGCACACTT
1 AGTGCCATACACTTCCAGCATCGCACACTTAGTGCCATATATTTCCAGCATGCACACTT
* * *
49795013 AGTGCCATATATTTCCAGCAT-GCACACTCAGTGCCATAT-TTTCCAGCATGCACACTT
1 AGTGCCATACACTTCCAGCATCGCACACTTAGTGCCATATATTTCCAGCATGCACACTT
49795070 AGTGCCA
1 AGTGCCA
49795077 ATCTCGTCAC
Statistics
Matches: 58, Mismatches: 5, Indels: 3
0.88 0.08 0.05
Matches are distributed among these distances:
57 25 0.43
58 32 0.55
59 1 0.02
ACGTcount: A:0.25, C:0.31, G:0.16, T:0.28
Consensus pattern (59 bp):
AGTGCCATACACTTCCAGCATCGCACACTTAGTGCCATATATTTCCAGCATGCACACTT
Found at i:49795064 original size:28 final size:29
Alignment explanation
Indices: 49794976--49795076 Score: 186
Period size: 29 Copynumber: 3.5 Consensus size: 29
49794966 CTTCGAGCTC
49794976 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
49795005 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
*
49795034 GCACACTCAGTGCCATAT-TTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
49795062 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
49795077 ATCTCGTCAC
Statistics
Matches: 70, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
28 24 0.34
29 46 0.66
ACGTcount: A:0.27, C:0.30, G:0.15, T:0.29
Consensus pattern (29 bp):
GCACACTTAGTGCCATATATTTCCAGCAT
Found at i:49800001 original size:33 final size:33
Alignment explanation
Indices: 49799946--49800062 Score: 144
Period size: 33 Copynumber: 3.5 Consensus size: 33
49799936 TATCTTTGGG
* *
49799946 TCGTATCCACCGTAGTACAGCACTTCCCCTGGC
1 TCGTATCCACCGCAGTACAGCACTACCCCTGGC
* * *
49799979 TTGTATCCACTGCAGTATAGCACTACCCCTGGC
1 TCGTATCCACCGCAGTACAGCACTACCCCTGGC
* * * *
49800012 TCGTATCCACCGCAGTACAACACTGCCCCCGAC
1 TCGTATCCACCGCAGTACAGCACTACCCCTGGC
*
49800045 CCGTATCCACCGCAGTAC
1 TCGTATCCACCGCAGTAC
49800063 TCTACTCCTC
Statistics
Matches: 71, Mismatches: 13, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
33 71 1.00
ACGTcount: A:0.21, C:0.40, G:0.17, T:0.21
Consensus pattern (33 bp):
TCGTATCCACCGCAGTACAGCACTACCCCTGGC
Found at i:49805828 original size:23 final size:23
Alignment explanation
Indices: 49805798--49805843 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
49805788 CAAAGGGTTA
*
49805798 CACGACAATTACTCGTCATAGTT
1 CACGACAATTACCCGTCATAGTT
49805821 CACGACAATTACCCGTCATAGTT
1 CACGACAATTACCCGTCATAGTT
49805844 TACTTTTTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.30, C:0.28, G:0.13, T:0.28
Consensus pattern (23 bp):
CACGACAATTACCCGTCATAGTT
Found at i:49822953 original size:30 final size:30
Alignment explanation
Indices: 49822919--49822979 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
49822909 TCCTTAACTC
49822919 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
49822949 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
49822979 A
1 A
49822980 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:49827003 original size:79 final size:82
Alignment explanation
Indices: 49826863--49827047 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
49826853 TCGAATGATG
* * *
49826863 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
*
49826927 CGTGCGAGTTAATA-AA
66 CGTGCGAGTCAATATAA
* **
49826943 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCAT
*
49827005 TCGTGCGAGTCACTATAA
65 TCGTGCGAGTCAATATAA
**
49827023 -CCGGGCTTCGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
49827048 AGCGAGTCGT
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 56 0.62
80 34 0.37
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (82 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTCAATATAA
Found at i:49827055 original size:40 final size:40
Alignment explanation
Indices: 49826864--49827055 Score: 151
Period size: 40 Copynumber: 4.8 Consensus size: 40
49826854 CGAATGATGT
* * * * *
49826864 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTCACTAAAC
** * * * * *
49826904 CCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATAAAT
1 CCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTCACTAAAC
* * *
49826944 CCGGGCTAAG-CCCGAAGGCATTTGTGCAAGTTACTAAAC
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAAC
*
49826983 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCACTATAA-
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTA-AAC
* *
49827023 CCGGGCTT-CGTCCCGAAGGCATTTGAGCGAGTC
1 CCGGG-TTAAGTCCCGAAGGCATTTGTGCGAGTC
49827056 GTTATATCCG
Statistics
Matches: 126, Mismatches: 20, Indels: 12
0.80 0.13 0.08
Matches are distributed among these distances:
39 33 0.26
40 82 0.65
41 11 0.09
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.23
Consensus pattern (40 bp):
CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAAC
Found at i:49827078 original size:79 final size:79
Alignment explanation
Indices: 49826863--49827080 Score: 183
Period size: 79 Copynumber: 2.7 Consensus size: 79
49826853 TCGAATGATG
* * * * ** *
49826863 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGA-TCCGAAGGCAT
1 TCCGGGCTAAG-CCCGAAGGCATTTGAGC-AAGTCACTAAACCCGGGTTA-AATTCCGAAGGCAT
*
49826926 TCGTGCGAGTTAATAAA
63 TCGTGCGAGTCAATAAA
* * * *
49826943 TCCGGGCTAAGCCCGAAGGCATTTGTGCAAGTTACTAAACCCGGGTTAAGTCCCGAAGGCATTCG
1 TCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGGCATTCG
*
49827008 TGCGAGTCACTATAA
66 TGCGAGTCAATA-AA
** * ** * *
49827023 -CCGGGCTTCGTCCCGAAGGCATTTGAGCGAGTCGTTATATCC-GGTTAAATTCCGAAGG
1 TCCGGGCTAAG-CCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGG
49827081 TACGTGATTC
Statistics
Matches: 113, Mismatches: 21, Indels: 9
0.79 0.15 0.06
Matches are distributed among these distances:
79 69 0.61
80 44 0.39
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (79 bp):
TCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGGCATTCG
TGCGAGTCAATAAA
Found at i:49835039 original size:79 final size:82
Alignment explanation
Indices: 49834899--49835083 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
49834889 TCGAATGATG
* * *
49834899 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
*
49834963 CGTGCGAGTTAATA-AA
66 CGTGCGAGTCAATATAA
* **
49834979 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCAT
*
49835041 TCGTGCGAGTCACTATAA
65 TCGTGCGAGTCAATATAA
**
49835059 -CCGGGCTTCGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
49835084 AGCGAGTCGT
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 56 0.62
80 34 0.37
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (82 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTCAATATAA
Found at i:49835091 original size:40 final size:40
Alignment explanation
Indices: 49834900--49835091 Score: 151
Period size: 40 Copynumber: 4.8 Consensus size: 40
49834890 CGAATGATGT
* * * * *
49834900 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTCACTAAAC
** * * * * *
49834940 CCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATAAAT
1 CCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTCACTAAAC
* * *
49834980 CCGGGCTAAG-CCCGAAGGCATTTGTGCAAGTTACTAAAC
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAAC
*
49835019 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCACTATAA-
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTA-AAC
* *
49835059 CCGGGCTT-CGTCCCGAAGGCATTTGAGCGAGTC
1 CCGGG-TTAAGTCCCGAAGGCATTTGTGCGAGTC
49835092 GTTATATCCG
Statistics
Matches: 126, Mismatches: 20, Indels: 12
0.80 0.13 0.08
Matches are distributed among these distances:
39 33 0.26
40 82 0.65
41 11 0.09
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.23
Consensus pattern (40 bp):
CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAAC
Found at i:49835114 original size:79 final size:79
Alignment explanation
Indices: 49834899--49835116 Score: 183
Period size: 79 Copynumber: 2.7 Consensus size: 79
49834889 TCGAATGATG
* * * * ** *
49834899 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGA-TCCGAAGGCAT
1 TCCGGGCTAAG-CCCGAAGGCATTTGAGC-AAGTCACTAAACCCGGGTTA-AATTCCGAAGGCAT
*
49834962 TCGTGCGAGTTAATAAA
63 TCGTGCGAGTCAATAAA
* * * *
49834979 TCCGGGCTAAGCCCGAAGGCATTTGTGCAAGTTACTAAACCCGGGTTAAGTCCCGAAGGCATTCG
1 TCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGGCATTCG
*
49835044 TGCGAGTCACTATAA
66 TGCGAGTCAATA-AA
** * ** * *
49835059 -CCGGGCTTCGTCCCGAAGGCATTTGAGCGAGTCGTTATATCC-GGTTAAATTCCGAAGG
1 TCCGGGCTAAG-CCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGG
49835117 TACGTGATTC
Statistics
Matches: 113, Mismatches: 21, Indels: 9
0.79 0.15 0.06
Matches are distributed among these distances:
79 69 0.61
80 44 0.39
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (79 bp):
TCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGGCATTCG
TGCGAGTCAATAAA
Found at i:49840409 original size:32 final size:32
Alignment explanation
Indices: 49840373--49840436 Score: 128
Period size: 32 Copynumber: 2.0 Consensus size: 32
49840363 GGTCTCGAAA
49840373 CCACTATTTTGACTAAACCCTAATTCAAGATG
1 CCACTATTTTGACTAAACCCTAATTCAAGATG
49840405 CCACTATTTTGACTAAACCCTAATTCAAGATG
1 CCACTATTTTGACTAAACCCTAATTCAAGATG
49840437 TTATACACCC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.34, C:0.25, G:0.09, T:0.31
Consensus pattern (32 bp):
CCACTATTTTGACTAAACCCTAATTCAAGATG
Found at i:49841224 original size:18 final size:19
Alignment explanation
Indices: 49841201--49841238 Score: 60
Period size: 18 Copynumber: 2.0 Consensus size: 19
49841191 GCATCATTTG
49841201 ATCACATAT-ATATAACAT
1 ATCACATATAATATAACAT
49841219 ATCACATATGAATATAACAT
1 ATCACATAT-AATATAACAT
49841239 CATATGTAAC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 9 0.50
20 9 0.50
ACGTcount: A:0.50, C:0.16, G:0.03, T:0.32
Consensus pattern (19 bp):
ATCACATATAATATAACAT
Found at i:49842376 original size:31 final size:31
Alignment explanation
Indices: 49842341--49842403 Score: 81
Period size: 31 Copynumber: 2.0 Consensus size: 31
49842331 CCTTTTCATA
49842341 TTCATAATTCATAACACTAGGCCGAAGCCTT
1 TTCATAATTCATAACACTAGGCCGAAGCCTT
* ** * *
49842372 TTCATATTTCATATTACTGGGCCTAAGCCTT
1 TTCATAATTCATAACACTAGGCCGAAGCCTT
49842403 T
1 T
49842404 ACTGTAAACG
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.27, C:0.24, G:0.13, T:0.37
Consensus pattern (31 bp):
TTCATAATTCATAACACTAGGCCGAAGCCTT
Found at i:49842672 original size:23 final size:24
Alignment explanation
Indices: 49842596--49842738 Score: 213
Period size: 23 Copynumber: 6.0 Consensus size: 24
49842586 GCTTTATCAT
*
49842596 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
49842621 ATAACTGGGGCA-AAGCCCTTTTTTA
1 ATAACTGGGGCATAAGCCC--TTTTA
49842646 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
49842669 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
49842693 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
49842717 ATAA-TGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
49842739 GCACTTCCTC
Statistics
Matches: 112, Mismatches: 1, Indels: 12
0.90 0.01 0.10
Matches are distributed among these distances:
23 42 0.38
24 39 0.35
25 25 0.22
26 6 0.05
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:49842703 original size:47 final size:48
Alignment explanation
Indices: 49842596--49842738 Score: 213
Period size: 47 Copynumber: 3.0 Consensus size: 48
49842586 GCTTTATCAT
*
49842596 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCA-AAGCCCTTTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCC--TTTTA
49842646 ATAACTGGGGCATAAGCCC-TTTAATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTA
49842693 ATAACTGGGGCATAAGCCCTTTTAATAA-TGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
49842739 GCACTTCCTC
Statistics
Matches: 89, Mismatches: 1, Indels: 9
0.90 0.01 0.09
Matches are distributed among these distances:
47 42 0.47
48 24 0.27
49 11 0.12
50 12 0.13
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTA
Found at i:49842811 original size:20 final size:20
Alignment explanation
Indices: 49842788--49842852 Score: 94
Period size: 20 Copynumber: 3.2 Consensus size: 20
49842778 CATAAATACA
* *
49842788 CATGTGCATGTCATTCATAT
1 CATGTGCATATCATACATAT
*
49842808 CATGTGCATATCATACATGT
1 CATGTGCATATCATACATAT
*
49842828 CATGTGCATATCATACATAC
1 CATGTGCATATCATACATAT
49842848 CATGT
1 CATGT
49842853 TTATCAAAAT
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 40 1.00
ACGTcount: A:0.29, C:0.22, G:0.14, T:0.35
Consensus pattern (20 bp):
CATGTGCATATCATACATAT
Found at i:49842819 original size:11 final size:11
Alignment explanation
Indices: 49842788--49842841 Score: 53
Period size: 11 Copynumber: 5.3 Consensus size: 11
49842778 CATAAATACA
*
49842788 CATGTGCATGT
1 CATGTGCATAT
49842799 CAT-T-CATAT
1 CATGTGCATAT
49842808 CATGTGCATAT
1 CATGTGCATAT
* *
49842819 CA--TACATGT
1 CATGTGCATAT
49842828 CATGTGCATAT
1 CATGTGCATAT
49842839 CAT
1 CAT
49842842 ACATACCATG
Statistics
Matches: 34, Mismatches: 5, Indels: 8
0.72 0.11 0.17
Matches are distributed among these distances:
9 14 0.41
10 2 0.06
11 18 0.53
ACGTcount: A:0.28, C:0.20, G:0.15, T:0.37
Consensus pattern (11 bp):
CATGTGCATAT
Found at i:49842917 original size:25 final size:25
Alignment explanation
Indices: 49842889--49842936 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
49842879 ATGTATAAAC
* * *
49842889 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
49842914 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
49842937 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:49844081 original size:18 final size:17
Alignment explanation
Indices: 49844054--49844087 Score: 59
Period size: 18 Copynumber: 1.9 Consensus size: 17
49844044 TAGGGAAGAA
49844054 AATAAGAAGAGAAAACT
1 AATAAGAAGAGAAAACT
49844071 AATACAGAAGAGAAAAC
1 AATA-AGAAGAGAAAAC
49844088 GGCACAGCTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 4 0.25
18 12 0.75
ACGTcount: A:0.65, C:0.09, G:0.18, T:0.09
Consensus pattern (17 bp):
AATAAGAAGAGAAAACT
Found at i:49848839 original size:31 final size:31
Alignment explanation
Indices: 49848796--49848859 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
49848786 CCTTTTCATA
*
49848796 TTTCATAATTCATAACACTGGGCTGAAGCCT
1 TTTCATAATTCATAACACTGGGCCGAAGCCT
* **
49848827 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATAATTCATAACACTGGGCCGAAGCCT
49848858 TT
1 TT
49848860 ACTGTAAACG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.25, C:0.22, G:0.16, T:0.38
Consensus pattern (31 bp):
TTTCATAATTCATAACACTGGGCCGAAGCCT
Found at i:49849128 original size:23 final size:24
Alignment explanation
Indices: 49849052--49849171 Score: 174
Period size: 24 Copynumber: 5.0 Consensus size: 24
49849042 GCTTTATCAT
*
49849052 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
49849077 ATAACTGGGGCA-AAGCCCTTTTTTA
1 ATAACTGGGGCATAAGCCC--TTTTA
49849102 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
49849125 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
49849149 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
49849172 GCACTTCCTC
Statistics
Matches: 89, Mismatches: 1, Indels: 11
0.88 0.01 0.11
Matches are distributed among these distances:
23 24 0.27
24 34 0.38
25 25 0.28
26 6 0.07
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.30
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:49849159 original size:47 final size:47
Alignment explanation
Indices: 49849073--49849170 Score: 171
Period size: 47 Copynumber: 2.1 Consensus size: 47
49849063 CCTAGCCTCT
49849073 TTTAATAACTGGGGCAAAGCCCTTTTTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCAAAGCCC-TTTTTAATAACTGGGGCATAAGCCC
49849121 TTTAATAACTGGGGCATAAGCCC-TTTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCA-AAGCCCTTTTTAATAACTGGGGCATAAGCCC
49849168 TTT
1 TTT
49849171 TGCACTTCCT
Statistics
Matches: 49, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
47 27 0.55
48 16 0.33
49 6 0.12
ACGTcount: A:0.29, C:0.20, G:0.20, T:0.31
Consensus pattern (47 bp):
TTTAATAACTGGGGCAAAGCCCTTTTTAATAACTGGGGCATAAGCCC
Found at i:49849245 original size:20 final size:20
Alignment explanation
Indices: 49849220--49849266 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
49849210 TCATAAATAC
* *
49849220 ATCATGTGCATGTCATTCAT
1 ATCATGTGCATATCATACAT
49849240 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
49849260 ACCATGT
1 ATCATGT
49849267 TTATCAAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.30, C:0.21, G:0.13, T:0.36
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:49849331 original size:25 final size:25
Alignment explanation
Indices: 49849303--49849350 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
49849293 ATGTATAAAC
* *
49849303 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAATGGTCATTTTTA
49849328 CCTAGGGGCAAAATGGTCATTTT
1 CCTAGGGGCAAAATGGTCATTTT
49849351 CATATTATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.25, C:0.15, G:0.25, T:0.35
Consensus pattern (25 bp):
CCTAGGGGCAAAATGGTCATTTTTA
Found at i:49852122 original size:54 final size:54
Alignment explanation
Indices: 49852051--49852182 Score: 183
Period size: 54 Copynumber: 2.4 Consensus size: 54
49852041 GTCACTACAA
* * * * *
49852051 GGGATTTAGTCTGGACTGGTAATCATGAAATCACTTTATGAGTTGATGTTACTG
1 GGGATTTAGCCTGGACTGGTAATCACGAAATCACCTTATGAGTTGATATTACGG
* * *
49852105 GGGATTTAGCCTAGACTGGTAATCACGACATCACCTTATGGGTTGATATTACGG
1 GGGATTTAGCCTGGACTGGTAATCACGAAATCACCTTATGAGTTGATATTACGG
*
49852159 GGGATTTAGCCTGGGCTGGTAATC
1 GGGATTTAGCCTGGACTGGTAATC
49852183 TCGCAATATG
Statistics
Matches: 68, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
54 68 1.00
ACGTcount: A:0.24, C:0.15, G:0.28, T:0.33
Consensus pattern (54 bp):
GGGATTTAGCCTGGACTGGTAATCACGAAATCACCTTATGAGTTGATATTACGG
Found at i:49860093 original size:21 final size:21
Alignment explanation
Indices: 49860069--49860115 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
49860059 TTTCAAACTC
* * *
49860069 ATTTTATTTTTGTTTTTATTT
1 ATTTTACTTTTATTTCTATTT
49860090 ATTTTACTTTTATTTCTATTT
1 ATTTTACTTTTATTTCTATTT
49860111 ATTTT
1 ATTTT
49860116 TGAAGTCTCA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.17, C:0.04, G:0.02, T:0.77
Consensus pattern (21 bp):
ATTTTACTTTTATTTCTATTT
Found at i:49861218 original size:6 final size:6
Alignment explanation
Indices: 49861209--49861234 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
49861199 CCTGACTATG
49861209 ACTGTT ACTGTT ACTGTT ACTGTT AC
1 ACTGTT ACTGTT ACTGTT ACTGTT AC
49861235 CCTATGGTGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.19, C:0.19, G:0.15, T:0.46
Consensus pattern (6 bp):
ACTGTT
Found at i:49861822 original size:22 final size:22
Alignment explanation
Indices: 49861796--49861839 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
49861786 TGAAATTATA
49861796 GAAAA-AGAGAAAAGACTAAATT
1 GAAAATAGA-AAAAGACTAAATT
* *
49861818 GAAAATAGAAAAATACTTAATT
1 GAAAATAGAAAAAGACTAAATT
49861840 AATTAAAAAG
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 16 0.84
23 3 0.16
ACGTcount: A:0.61, C:0.05, G:0.14, T:0.20
Consensus pattern (22 bp):
GAAAATAGAAAAAGACTAAATT
Found at i:49888938 original size:30 final size:30
Alignment explanation
Indices: 49888902--49889032 Score: 171
Period size: 30 Copynumber: 4.5 Consensus size: 30
49888892 GACAAGATTG
* * * * *
49888902 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
*
49888932 GCACTAAGTGTGCGAGTTTG---ATTATATA
1 GCACTAAGTGTGCGAG-CTGAAAATTATATA
49888960 GCACTAAGTGTGCGAGCTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
49888990 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
49889019 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
49889033 GATTCACTAT
Statistics
Matches: 92, Mismatches: 5, Indels: 9
0.87 0.05 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.24
29 20 0.22
30 46 0.50
31 2 0.02
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGCTGAAAATTATATA
Found at i:49888993 original size:58 final size:58
Alignment explanation
Indices: 49888902--49889032 Score: 174
Period size: 58 Copynumber: 2.2 Consensus size: 58
49888892 GACAAGATTG
* * * * * *
49888902 GCACTAAGTGTGCGGGTTTAAAATTGTACAGCACTAAGTGTGCGAGTTTG-ATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAG-CTGAAATATATA
*
49888960 GCACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAGCTG-AAATATATA
49889019 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
49889033 GATTCACTAT
Statistics
Matches: 64, Mismatches: 7, Indels: 3
0.86 0.09 0.04
Matches are distributed among these distances:
57 2 0.03
58 41 0.64
59 21 0.33
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (58 bp):
GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAGCTGAAATATATA
Found at i:49891371 original size:25 final size:26
Alignment explanation
Indices: 49891317--49891371 Score: 60
Period size: 25 Copynumber: 2.2 Consensus size: 26
49891307 GTGCCTTTCT
* *
49891317 TTTTCTTTTTCTTTATGTTTTATTTC
1 TTTTCTTTTTCTTTATGTATTATTTA
*
49891343 TTTT-TTTTTCTTTAT-TAATTCTTTA
1 TTTTCTTTTTCTTTATGT-ATTATTTA
49891368 TTTT
1 TTTT
49891372 ATTAATATAT
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
24 1 0.04
25 20 0.80
26 4 0.16
ACGTcount: A:0.11, C:0.09, G:0.02, T:0.78
Consensus pattern (26 bp):
TTTTCTTTTTCTTTATGTATTATTTA
Found at i:49894491 original size:40 final size:40
Alignment explanation
Indices: 49894417--49894562 Score: 175
Period size: 40 Copynumber: 3.6 Consensus size: 40
49894407 CCGCACCAAG
* * * * * *
49894417 GCCTACGGGACTTAACCCGGATATCACGATTTGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
* *
49894457 GCCTTCGGGTCTTAGCCCGGATTTAACAACTTGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
* * * *
49894497 GCCTTCGGGTCTTAGCCCGGATATAGCTACTAGCACAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
*
49894537 GCCTTCGGGTCTTAACCCGGATATAA
1 GCCTTCGGGTCTTAGCCCGGATATAA
49894563 TTTTCAGCAT
Statistics
Matches: 90, Mismatches: 16, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 90 1.00
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
Found at i:49894577 original size:40 final size:40
Alignment explanation
Indices: 49894449--49894600 Score: 164
Period size: 40 Copynumber: 3.8 Consensus size: 40
49894439 ATCACGATTT
* * * * *
49894449 GCACAAATGCCTTCGGGTCTTAGCCCGGATTTAACAACTT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAGCTACTA
49894489 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAGCTACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAGCTACTA
* * **
49894529 GCACAATTGCCTTCGGGTCTTAACCCGGATATA-ATTTTCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAGCTACT-A
* * *
49894569 GCATAATTGTCTTCGGGGCTTAGCCCGGATAT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
49894601 CATTCAATTT
Statistics
Matches: 97, Mismatches: 12, Indels: 6
0.84 0.10 0.05
Matches are distributed among these distances:
39 4 0.04
40 91 0.94
41 2 0.02
ACGTcount: A:0.23, C:0.26, G:0.22, T:0.29
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAGCTACTA
Found at i:49902592 original size:40 final size:40
Alignment explanation
Indices: 49902512--49902645 Score: 155
Period size: 40 Copynumber: 3.4 Consensus size: 40
49902502 CCGCACCAAG
* * * * *
49902512 GCCTACGGGACTTAACCCGGATATCACGA-TTGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
*
49902551 GCCTTCGGGTCTTAGCCCGGAT-TAACAACTTTGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACAAC-TTGCACAAAT
* * *
49902591 GCCTTCGGGTCTTAGCCCGGATATAGCTACTAGCACAAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAA-T
49902632 GCCTTCGGGTCTTA
1 GCCTTCGGGTCTTA
49902646 AACCCGATAT
Statistics
Matches: 81, Mismatches: 10, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
38 4 0.05
39 19 0.23
40 38 0.47
41 20 0.25
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
Found at i:49904779 original size:40 final size:40
Alignment explanation
Indices: 49904735--49904900 Score: 187
Period size: 40 Copynumber: 4.2 Consensus size: 40
49904725 GGAAATATAA
49904735 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
49904775 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
49904815 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
49904855 CCGGATATAATTC-C-AGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAA-TCACTAGCACAAATGCCTTCGGGTCTTAGC
49904893 CCGGATAT
1 CCGGATAT
49904901 CATTCAATTT
Statistics
Matches: 108, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
38 13 0.12
39 17 0.16
40 77 0.71
41 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:49918079 original size:14 final size:14
Alignment explanation
Indices: 49918060--49918086 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
49918050 AGTGGTCCAG
49918060 TTGAACTGAACCGA
1 TTGAACTGAACCGA
49918074 TTGAACTGAACCG
1 TTGAACTGAACCG
49918087 GCCAAGGATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.33, C:0.22, G:0.22, T:0.22
Consensus pattern (14 bp):
TTGAACTGAACCGA
Found at i:49925397 original size:30 final size:30
Alignment explanation
Indices: 49925363--49925419 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 30
49925353 AAGTATTTTT
* * *
49925363 AAAATTTGGTTACTCTTTTTGTAAATAATA
1 AAAATTTGATGACTCTTTCTGTAAATAATA
*
49925393 AAAATTTGATGCCTCTTTCTGTAAATA
1 AAAATTTGATGACTCTTTCTGTAAATA
49925420 TTTTCAAAGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.35, C:0.11, G:0.11, T:0.44
Consensus pattern (30 bp):
AAAATTTGATGACTCTTTCTGTAAATAATA
Found at i:49925704 original size:17 final size:18
Alignment explanation
Indices: 49925678--49925711 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
49925668 CTTATTTTTA
49925678 AATAAATTAATA-GCATT
1 AATAAATTAATATGCATT
*
49925695 AATAATTTAATATGCAT
1 AATAAATTAATATGCAT
49925712 ATATTTAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.50, C:0.06, G:0.06, T:0.38
Consensus pattern (18 bp):
AATAAATTAATATGCATT
Found at i:49931728 original size:29 final size:29
Alignment explanation
Indices: 49931696--49931764 Score: 120
Period size: 29 Copynumber: 2.4 Consensus size: 29
49931686 TGTGTATAAT
49931696 TACATCAAATTAAAATTCATATAAAATTG
1 TACATCAAATTAAAATTCATATAAAATTG
*
49931725 TACATCAAATAAAAATTCATATAAAATTG
1 TACATCAAATTAAAATTCATATAAAATTG
*
49931754 TATATCAAATT
1 TACATCAAATT
49931765 TACAATAGAT
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
29 37 1.00
ACGTcount: A:0.52, C:0.10, G:0.03, T:0.35
Consensus pattern (29 bp):
TACATCAAATTAAAATTCATATAAAATTG
Found at i:49931879 original size:20 final size:22
Alignment explanation
Indices: 49931844--49931901 Score: 66
Period size: 22 Copynumber: 2.7 Consensus size: 22
49931834 ACATGTTAGC
**
49931844 AAACAAATATGAATAT-AAAT-
1 AAACAAATATTTATATAAAATA
*
49931864 AGACAAATATTTATATAAAATA
1 AAACAAATATTTATATAAAATA
*
49931886 AAATAAATATTTATAT
1 AAACAAATATTTATAT
49931902 TTAAAATATT
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
20 13 0.42
21 4 0.13
22 14 0.45
ACGTcount: A:0.60, C:0.03, G:0.03, T:0.33
Consensus pattern (22 bp):
AAACAAATATTTATATAAAATA
Found at i:49936986 original size:42 final size:42
Alignment explanation
Indices: 49936876--49936997 Score: 142
Period size: 43 Copynumber: 2.9 Consensus size: 42
49936866 TACCATACCA
* * * *
49936876 ATGCCATATCCCAGATATGGTCTTATATGGGATCTCGTATCG
1 ATGCCATATCCCAGATATGGTCTTACATCGAATCTCATATCG
*
49936918 ATGCCAATAACCCA-ACTATGGTCTTACA-CGAATACTCATATCG
1 ATGCC-ATATCCCAGA-TATGGTCTTACATCGAAT-CTCATATCG
49936961 ATGCCATATCCCAGATATGGTCTTACAT-GTAATCTCA
1 ATGCCATATCCCAGATATGGTCTTACATCG-AATCTCA
49936998 ATTAACCCTA
Statistics
Matches: 68, Mismatches: 6, Indels: 12
0.79 0.07 0.14
Matches are distributed among these distances:
42 33 0.49
43 35 0.51
ACGTcount: A:0.30, C:0.25, G:0.16, T:0.30
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACATCGAATCTCATATCG
Found at i:49940331 original size:34 final size:34
Alignment explanation
Indices: 49940187--49940342 Score: 159
Period size: 34 Copynumber: 4.6 Consensus size: 34
49940177 GCAATATGGA
* * * * **
49940187 ATGCTTATGATAGATTAATATGATAGCATTTAAT
1 ATGCTTATAACAGATCAATATGGTAGCAAATAAT
* * *
49940221 ATACTTATAATAGTTCAATATGGTAGCAAATAAT
1 ATGCTTATAACAGATCAATATGGTAGCAAATAAT
* * * *
49940255 ATACTTATAATAGATCAATAAGGTAGCAAATAAC
1 ATGCTTATAACAGATCAATATGGTAGCAAATAAT
* *
49940289 ATGCTTATAACAGATCAATGTGGTACCAAATAAT
1 ATGCTTATAACAGATCAATATGGTAGCAAATAAT
* *
49940323 ATGTTTATAACAAATCAATA
1 ATGCTTATAACAGATCAATA
49940343 CAGTGGAAAA
Statistics
Matches: 103, Mismatches: 19, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
34 103 1.00
ACGTcount: A:0.44, C:0.10, G:0.12, T:0.33
Consensus pattern (34 bp):
ATGCTTATAACAGATCAATATGGTAGCAAATAAT
Found at i:49944207 original size:28 final size:27
Alignment explanation
Indices: 49944175--49944240 Score: 98
Period size: 28 Copynumber: 2.4 Consensus size: 27
49944165 TTTAAAACCC
49944175 TAGGGGT-ATATCGGTAATTTTGCTCTTT
1 TAGGGGTAAT-TCGGTAATTTTGCT-TTT
49944203 TAGGGGTAATTCGGTAATTTTGCTTTT
1 TAGGGGTAATTCGGTAATTTTGCTTTT
*
49944230 TAAGGGTAATT
1 TAGGGGTAATT
49944241 TCGTATTCTA
Statistics
Matches: 36, Mismatches: 1, Indels: 3
0.90 0.03 0.08
Matches are distributed among these distances:
27 13 0.36
28 21 0.58
29 2 0.06
ACGTcount: A:0.21, C:0.08, G:0.26, T:0.45
Consensus pattern (27 bp):
TAGGGGTAATTCGGTAATTTTGCTTTT
Found at i:49945561 original size:20 final size:20
Alignment explanation
Indices: 49945538--49945575 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
49945528 CACATCCAAA
*
49945538 TACAAAATTTTAAAAATCTT
1 TACAAAATATTAAAAATCTT
*
49945558 TACAAAATATTGAAAATC
1 TACAAAATATTAAAAATC
49945576 GCGAATAAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.11, G:0.03, T:0.34
Consensus pattern (20 bp):
TACAAAATATTAAAAATCTT
Found at i:49951877 original size:27 final size:27
Alignment explanation
Indices: 49951811--49951874 Score: 105
Period size: 27 Copynumber: 2.4 Consensus size: 27
49951801 TTTAAAACCC
49951811 TAGGGGT-ATATCGGTAATTTTGCTCTT
1 TAGGGGTAAT-TCGGTAATTTTGCTCTT
49951838 TAGGGGTAATTCGGTAATTTTGCTCTT
1 TAGGGGTAATTCGGTAATTTTGCTCTT
49951865 TA-GGGTAATT
1 TAGGGGTAATT
49951875 TCGTGTTCTA
Statistics
Matches: 36, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
26 8 0.22
27 26 0.72
28 2 0.06
ACGTcount: A:0.20, C:0.09, G:0.27, T:0.44
Consensus pattern (27 bp):
TAGGGGTAATTCGGTAATTTTGCTCTT
Found at i:49953195 original size:20 final size:20
Alignment explanation
Indices: 49953172--49953209 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
49953162 CACATCCAAA
*
49953172 TACAAAATTTTAAAAATCTT
1 TACAAAATATTAAAAATCTT
*
49953192 TACAAAATATTGAAAATC
1 TACAAAATATTAAAAATC
49953210 GCGAATAAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.11, G:0.03, T:0.34
Consensus pattern (20 bp):
TACAAAATATTAAAAATCTT
Found at i:49953818 original size:42 final size:42
Alignment explanation
Indices: 49953730--49953819 Score: 99
Period size: 42 Copynumber: 2.1 Consensus size: 42
49953720 GACATGGGTG
* * * **
49953730 TGTGTCTCAGCCGTGTGGATAACACGGTCTTGGGAATGAGTG
1 TGTGTCTCAGCCATGTGGATAACACGGTCTTAGGAACGAGCA
* * * *
49953772 TGTGTCTCAGTCATGTGGATGACACGGTCTTAGGCACGGGCA
1 TGTGTCTCAGCCATGTGGATAACACGGTCTTAGGAACGAGCA
49953814 TGTGTC
1 TGTGTC
49953820 CTAGGCGTGT
Statistics
Matches: 39, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
42 39 1.00
ACGTcount: A:0.18, C:0.19, G:0.34, T:0.29
Consensus pattern (42 bp):
TGTGTCTCAGCCATGTGGATAACACGGTCTTAGGAACGAGCA
Found at i:49960449 original size:41 final size:41
Alignment explanation
Indices: 49960404--49960492 Score: 126
Period size: 41 Copynumber: 2.2 Consensus size: 41
49960394 GATATTTGGC
*
49960404 CTTTATGCCAG-TGTATAATATCAGGACTATTTACTAGCAGG
1 CTTTATG-CAGCTGTATAATATCAGGACTATTGACTAGCAGG
* * *
49960445 CTTTATGCTGCTGTATAATATCAGGCCTATTGCCTAGCAGG
1 CTTTATGCAGCTGTATAATATCAGGACTATTGACTAGCAGG
49960486 CTTTATG
1 CTTTATG
49960493 TAACACCCCG
Statistics
Matches: 43, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
40 2 0.05
41 41 0.95
ACGTcount: A:0.25, C:0.19, G:0.20, T:0.36
Consensus pattern (41 bp):
CTTTATGCAGCTGTATAATATCAGGACTATTGACTAGCAGG
Found at i:49961510 original size:28 final size:27
Alignment explanation
Indices: 49961478--49961558 Score: 76
Period size: 27 Copynumber: 3.0 Consensus size: 27
49961468 TTAGAATACT
*
49961478 TTAGTTTACTAAAATTA-TCGAAATACCC
1 TTAGTTT-CTAAAAATACT-GAAATACCC
*
49961506 TTAGTTTGTAAAAATACTGAAATACCC
1 TTAGTTTCTAAAAATACTGAAATACCC
* * *
49961533 -TCGATTTGTAAAATTACTGAAATACC
1 TTAG-TTTCTAAAAATACTGAAATACC
49961559 TTCGACTTGT
Statistics
Matches: 47, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
26 2 0.04
27 37 0.79
28 8 0.17
ACGTcount: A:0.40, C:0.16, G:0.10, T:0.35
Consensus pattern (27 bp):
TTAGTTTCTAAAAATACTGAAATACCC
Found at i:49961517 original size:27 final size:28
Alignment explanation
Indices: 49961487--49961576 Score: 107
Period size: 27 Copynumber: 3.3 Consensus size: 28
49961477 TTTAGTTTAC
49961487 TAAAATTA-TCGAAATACCCTTAG-TTTG
1 TAAAATTACT-GAAATACCCTTAGATTTG
* *
49961514 TAAAAATACTGAAATACCC-TCGATTTG
1 TAAAATTACTGAAATACCCTTAGATTTG
* *
49961541 TAAAATTACTGAAATA-CCTTCGACTTG
1 TAAAATTACTGAAATACCCTTAGATTTG
49961568 TAAAATTAC
1 TAAAATTAC
49961577 CAAAGTACCC
Statistics
Matches: 56, Mismatches: 4, Indels: 6
0.85 0.06 0.09
Matches are distributed among these distances:
26 4 0.07
27 51 0.91
28 1 0.02
ACGTcount: A:0.40, C:0.17, G:0.10, T:0.33
Consensus pattern (28 bp):
TAAAATTACTGAAATACCCTTAGATTTG
Found at i:49961766 original size:27 final size:27
Alignment explanation
Indices: 49961582--49961766 Score: 228
Period size: 27 Copynumber: 6.9 Consensus size: 27
49961572 ATTACCAAAG
*
49961582 TACCCCCGATTTACAGAATTA-TCGTTT
1 TACCCTCGATTTACAGAATTACT-GTTT
* * **
49961609 TACCCCCGATTTACATAATTACCATTT
1 TACCCTCGATTTACAGAATTACTGTTT
* * * *
49961636 TACCCCCTATTTACATAATTACCGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
49961663 TACCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
* *
49961690 TACCCTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACTGTTT
*
49961717 TACCCTTGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
* *
49961744 TACCCTTGATTTACAAAATTACT
1 TACCCTCGATTTACAGAATTACT
49961767 AAAATACCCT
Statistics
Matches: 142, Mismatches: 15, Indels: 2
0.89 0.09 0.01
Matches are distributed among these distances:
27 142 1.00
ACGTcount: A:0.28, C:0.24, G:0.08, T:0.41
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACTGTTT
Found at i:49961774 original size:27 final size:27
Alignment explanation
Indices: 49961663--49961887 Score: 143
Period size: 27 Copynumber: 8.3 Consensus size: 27
49961653 ATTACCGTTT
* * ****
49961663 TACCCTCGATTTACAGAATTACTGTTT
1 TACCCTTGATTTACAAAATTACTAAAA
* * * ***
49961690 TACCCTCGATTTATAGAATTACTATTT
1 TACCCTTGATTTACAAAATTACTAAAA
* ****
49961717 TACCCTTGATTTACAGAATTACTGTTT
1 TACCCTTGATTTACAAAATTACTAAAA
49961744 TACCCTTGATTTACAAAATTACTAAAA
1 TACCCTTGATTTACAAAATTACTAAAA
* ** *
49961771 TACCCTTAATTTGTAAAATTACCAAAA
1 TACCCTTGATTTACAAAATTACTAAAA
* *
49961798 TACCCCTGATTTACAAAGTTAC-AGAAA
1 TACCCTTGATTTACAAAATTACTA-AAA
49961825 TACCCTTGACTTT-CTAAAAATTA-TAGAAA
1 TACCCTTGA-TTTAC--AAAATTACTA-AAA
* *
49961854 TACCATT-AGTTTACAAAATTACTGAAA
1 TACCCTTGA-TTTACAAAATTACTAAAA
49961881 TACCCTT
1 TACCCTT
49961888 AGTTTGTAGA
Statistics
Matches: 166, Mismatches: 25, Indels: 14
0.81 0.12 0.07
Matches are distributed among these distances:
26 1 0.01
27 139 0.84
28 8 0.05
29 18 0.11
ACGTcount: A:0.36, C:0.20, G:0.08, T:0.36
Consensus pattern (27 bp):
TACCCTTGATTTACAAAATTACTAAAA
Found at i:49961775 original size:54 final size:54
Alignment explanation
Indices: 49961663--49961782 Score: 168
Period size: 54 Copynumber: 2.2 Consensus size: 54
49961653 ATTACCGTTT
* * * ***
49961663 TACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTATAGAATTACTATTT
1 TACCCTTGATTTACAGAATTACTGTTTTACCCTCGATTTACAAAATTACTAAAA
*
49961717 TACCCTTGATTTACAGAATTACTGTTTTACCCTTGATTTACAAAATTACTAAAA
1 TACCCTTGATTTACAGAATTACTGTTTTACCCTCGATTTACAAAATTACTAAAA
*
49961771 TACCCTTAATTT
1 TACCCTTGATTT
49961783 GTAAAATTAC
Statistics
Matches: 58, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
54 58 1.00
ACGTcount: A:0.31, C:0.20, G:0.07, T:0.42
Consensus pattern (54 bp):
TACCCTTGATTTACAGAATTACTGTTTTACCCTCGATTTACAAAATTACTAAAA
Found at i:49961791 original size:54 final size:54
Alignment explanation
Indices: 49961744--49961895 Score: 157
Period size: 56 Copynumber: 2.8 Consensus size: 54
49961734 ATTACTGTTT
**
49961744 TACCCTTGATTTACAAAATTACTAAAATACCCTTAATTTGTAAAATTACCAAAA
1 TACCCTTGATTTACAAAATTACTAAAATACCCTTAATTTGTAAAATTACTGAAA
* * * *
49961798 TACCCCTGATTTACAAAGTTAC-AGAAATACCCTTGACTTTCTAAAAATTA-TAGAAA
1 TACCCTTGATTTACAAAATTACTA-AAATACCCTT-AATTTGT-AAAATTACT-GAAA
* * *
49961854 TACCATT-AGTTTACAAAATTACTGAAATACCCTTAGTTTGTA
1 TACCCTTGA-TTTACAAAATTACTAAAATACCCTTAATTTGTA
49961896 GATTTACCAA
Statistics
Matches: 80, Mismatches: 12, Indels: 12
0.77 0.12 0.12
Matches are distributed among these distances:
53 1 0.01
54 31 0.39
55 11 0.14
56 37 0.46
ACGTcount: A:0.41, C:0.18, G:0.07, T:0.34
Consensus pattern (54 bp):
TACCCTTGATTTACAAAATTACTAAAATACCCTTAATTTGTAAAATTACTGAAA
Found at i:49961791 original size:81 final size:81
Alignment explanation
Indices: 49961625--49961794 Score: 198
Period size: 81 Copynumber: 2.1 Consensus size: 81
49961615 CGATTTACAT
* * ****
49961625 AATTACCATTTTACCCCCTATTTACATAATTACCGTTTTACCCTCGATTTACAGAATTACTGTTT
1 AATTACCATTTTACCCCCTATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACTAAAA
* *
49961690 TACCCTCGATTTATAG
66 TACCCTCAATTTATAA
* * * *
49961706 AATTACTATTTTA-CCCTTGATTTACAGAATTACTGTTTTACCCTTGATTTACAAAATTACTAAA
1 AATTACCATTTTACCCCCT-ATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACTAAA
* *
49961770 ATACCCTTAATTTGTAA
65 ATACCCTCAATTTATAA
49961787 AATTACCA
1 AATTACCA
49961795 AAATACCCCT
Statistics
Matches: 73, Mismatches: 15, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
80 4 0.05
81 69 0.95
ACGTcount: A:0.32, C:0.21, G:0.06, T:0.41
Consensus pattern (81 bp):
AATTACCATTTTACCCCCTATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACTAAAA
TACCCTCAATTTATAA
Found at i:49961802 original size:81 final size:81
Alignment explanation
Indices: 49961639--49961812 Score: 188
Period size: 81 Copynumber: 2.2 Consensus size: 81
49961629 ACCATTTTAC
* * **** *
49961639 CCCCT-ATTTACATAATTACCGTTTTACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTA
1 CCCCTGATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACTAAAATACCCTCAATTTA
* * ***
49961703 TAGAATTACTATTTTA
66 TAAAATTACCAAAATA
* * * * *
49961719 CCCTTGATTTACAGAATTACTGTTTTACCCTTGATTTACAAAATTACTAAAATACCCTTAATTTG
1 CCCCTGATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACTAAAATACCCTCAATTTA
49961784 TAAAATTACCAAAATA
66 TAAAATTACCAAAATA
49961800 CCCCTGATTTACA
1 CCCCTGATTTACA
49961813 AAGTTACAGA
Statistics
Matches: 75, Mismatches: 18, Indels: 1
0.80 0.19 0.01
Matches are distributed among these distances:
80 4 0.05
81 71 0.95
ACGTcount: A:0.32, C:0.22, G:0.07, T:0.39
Consensus pattern (81 bp):
CCCCTGATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACTAAAATACCCTCAATTTA
TAAAATTACCAAAATA
Found at i:49962010 original size:27 final size:27
Alignment explanation
Indices: 49961933--49962010 Score: 88
Period size: 27 Copynumber: 2.9 Consensus size: 27
49961923 AAATGACTAA
* *
49961933 AATACCCCT-AATAGGTAAAAAGACCGT
1 AATACCCCTGTAT-GGTAAAATGACCGT
* *
49961960 AA-AGCCCCTGTAGGGTAAAGTGACCGT
1 AATA-CCCCTGTATGGTAAAATGACCGT
49961987 AATACCCCTGTATGGTAAAATGAC
1 AATACCCCTGTATGGTAAAATGAC
49962011 GAATATGCCC
Statistics
Matches: 42, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
26 1 0.02
27 39 0.93
28 2 0.05
ACGTcount: A:0.37, C:0.22, G:0.21, T:0.21
Consensus pattern (27 bp):
AATACCCCTGTATGGTAAAATGACCGT
Found at i:49963261 original size:9 final size:9
Alignment explanation
Indices: 49963249--49963305 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
49963239 TTTGATAAAC
49963249 ATGATATGT
1 ATGATATGT
*
49963258 ATGATATGCAC
1 ATGATATG--T
*
49963269 ATGACATGT
1 ATGATATGT
*
49963278 ATGATATGCAC
1 ATGATATG--T
49963289 ATGATATGT
1 ATGATATGT
49963298 ATGATATG
1 ATGATATG
49963306 CACATGAGAT
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:49963272 original size:20 final size:20
Alignment explanation
Indices: 49963247--49963317 Score: 124
Period size: 20 Copynumber: 3.5 Consensus size: 20
49963237 ATTTTGATAA
49963247 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
49963267 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
49963287 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
49963307 ACATGAGATGT
1 ACATGATATGT
49963318 TCATAAATGC
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.35, C:0.11, G:0.21, T:0.32
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:49963294 original size:11 final size:11
Alignment explanation
Indices: 49963258--49963312 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
49963248 CATGATATGT
49963258 ATGATATGCAC
1 ATGATATGCAC
* *
49963269 ATGACATG--T
1 ATGATATGCAC
49963278 ATGATATGCAC
1 ATGATATGCAC
*
49963289 ATGATATG--T
1 ATGATATGCAC
49963298 ATGATATGCAC
1 ATGATATGCAC
49963309 ATGA
1 ATGA
49963313 GATGTTCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.36, C:0.13, G:0.20, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:49963443 original size:25 final size:24
Alignment explanation
Indices: 49963364--49963557 Score: 261
Period size: 25 Copynumber: 8.0 Consensus size: 24
49963354 AGGAAGTGCA
49963364 AAAGGGCTTATGCCCCAGTTAT-T
1 AAAGGGCTTATGCCCCAGTTATAT
49963387 AAAGGGCTTATGCCCCAGTTAT-T
1 AAAGGGCTTATGCCCCAGTTATAT
49963410 AAAGGGCTTATGCCCCAGTTATGAT
1 AAAGGGCTTATGCCCCAGTTAT-AT
49963435 AAAGGGCTTATGCCCCAGTTATGAT
1 AAAGGGCTTATGCCCCAGTTAT-AT
* *
49963460 GAAGGGCTTATGCCCCAGTTGTGAT
1 AAAGGGCTTATGCCCCAGTTAT-AT
*
49963485 AAAGGGCTTATGCCCCAGTTATAA
1 AAAGGGCTTATGCCCCAGTTATAT
*
49963509 AAAGGGCTTTTGCCCCAGTTACTA-
1 AAAGGGCTTATGCCCCAGTTA-TAT
*
49963533 AAAGAGGC-TAGGCCTCCAGTTATAT
1 AAAG-GGCTTATGCC-CCAGTTATAT
49963558 GATAAAGCAG
Statistics
Matches: 157, Mismatches: 8, Indels: 10
0.90 0.05 0.06
Matches are distributed among these distances:
23 45 0.29
24 31 0.20
25 81 0.52
ACGTcount: A:0.27, C:0.21, G:0.24, T:0.28
Consensus pattern (24 bp):
AAAGGGCTTATGCCCCAGTTATAT
Found at i:49963801 original size:30 final size:31
Alignment explanation
Indices: 49963748--49963810 Score: 92
Period size: 30 Copynumber: 2.1 Consensus size: 31
49963738 CCGTTACAGT
*
49963748 AAAGGCTTCGGCCCAGTAATATGAAATTTGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
49963779 AAAGGCTTCGG-CCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
49963809 AA
1 AA
49963811 TATGAAAAGG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
30 18 0.62
31 11 0.38
ACGTcount: A:0.37, C:0.14, G:0.24, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:49966545 original size:28 final size:27
Alignment explanation
Indices: 49966514--49966594 Score: 76
Period size: 27 Copynumber: 3.0 Consensus size: 27
49966504 TTTAGAATAT
*
49966514 TTAGTTTACTAAAATTA-TCGAAATACCC
1 TTAGTTT-CTAAAAATACT-GAAATACCC
*
49966542 TTAGTTTGTAAAAATACTGAAATACCC
1 TTAGTTTCTAAAAATACTGAAATACCC
* * *
49966569 -TCGATTTGTAAAATTACTGAAATACC
1 TTAG-TTTCTAAAAATACTGAAATACC
49966595 TTCGACTTGT
Statistics
Matches: 47, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
26 2 0.04
27 37 0.79
28 8 0.17
ACGTcount: A:0.40, C:0.16, G:0.10, T:0.35
Consensus pattern (27 bp):
TTAGTTTCTAAAAATACTGAAATACCC
Found at i:49966563 original size:27 final size:27
Alignment explanation
Indices: 49966533--49966608 Score: 91
Period size: 27 Copynumber: 2.8 Consensus size: 27
49966523 TAAAATTATC
49966533 GAAATACCCTTAG-TTTGTAAAAATACT
1 GAAATACCC-TAGATTTGTAAAAATACT
* *
49966560 GAAATACCCTCGATTTGTAAAATTACT
1 GAAATACCCTAGATTTGTAAAAATACT
* * *
49966587 GAAATACCTTCGACTTGTAAAA
1 GAAATACCCTAGATTTGTAAAA
49966609 TTACCAAAGT
Statistics
Matches: 44, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
26 2 0.05
27 42 0.95
ACGTcount: A:0.39, C:0.17, G:0.12, T:0.32
Consensus pattern (27 bp):
GAAATACCCTAGATTTGTAAAAATACT
Found at i:49966621 original size:27 final size:27
Alignment explanation
Indices: 49966547--49966612 Score: 105
Period size: 27 Copynumber: 2.4 Consensus size: 27
49966537 TACCCTTAGT
* *
49966547 TTGTAAAAATACTGAAATACCCTCGAT
1 TTGTAAAATTACTGAAATACCCTCGAC
*
49966574 TTGTAAAATTACTGAAATACCTTCGAC
1 TTGTAAAATTACTGAAATACCCTCGAC
49966601 TTGTAAAATTAC
1 TTGTAAAATTAC
49966613 CAAAGTACCC
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 36 1.00
ACGTcount: A:0.39, C:0.17, G:0.11, T:0.33
Consensus pattern (27 bp):
TTGTAAAATTACTGAAATACCCTCGAC
Found at i:49966657 original size:27 final size:26
Alignment explanation
Indices: 49966618--49966799 Score: 206
Period size: 27 Copynumber: 6.8 Consensus size: 26
49966608 ATTACCAAAG
49966618 TACCC-CGATTTACAGAATTATCGTTT
1 TACCCTCGATTTACAGAATTA-CGTTT
* *
49966644 TACCCCCGATTTACATAATTATCGTTT
1 TACCCTCGATTTACAGAATTA-CGTTT
* *
49966671 TACCC-CTATTTACATAATTACCGTTT
1 TACCCTCGATTTACAGAATTA-CGTTT
49966697 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTA-CGTTT
* *
49966724 TACCCTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAGAATTAC-GTTT
* *
49966751 TACCCTTGATTTACAGAATTACTATTT
1 TACCCTCGATTTACAGAATTAC-GTTT
* *
49966778 TACCCTCGATTCACAAAATTAC
1 TACCCTCGATTTACAGAATTAC
49966800 TAAAATACCC
Statistics
Matches: 141, Mismatches: 12, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
26 30 0.21
27 111 0.79
ACGTcount: A:0.29, C:0.24, G:0.08, T:0.40
Consensus pattern (26 bp):
TACCCTCGATTTACAGAATTACGTTT
Found at i:49966808 original size:27 final size:27
Alignment explanation
Indices: 49966724--49966921 Score: 141
Period size: 27 Copynumber: 7.3 Consensus size: 27
49966714 ATTACCGTTT
* * * ***
49966724 TACCCTCGATTTATAGAATTACTATTT
1 TACCCTTGATTTACAAAATTACTAAAA
* ***
49966751 TACCCTTGATTTACAGAATTACTATTT
1 TACCCTTGATTTACAAAATTACTAAAA
* *
49966778 TACCCTCGATTCACAAAATTACTAAAA
1 TACCCTTGATTTACAAAATTACTAAAA
* ** *
49966805 TACCCTTAATTTGTAAAATTACCAAAA
1 TACCCTTGATTTACAAAATTACTAAAA
* *
49966832 TACCCCTGATTTACAAAGTTAC-AGAAA
1 TACCCTTGATTTACAAAATTACTA-AAA
49966859 TACCCTTGACTTT-CTAAAAATTA-TAGAAA
1 TACCCTTGA-TTTAC--AAAATTACTA-AAA
* * *
49966888 TACCATTGGTTTACAAAATTACTGAAA
1 TACCCTTGATTTACAAAATTACTAAAA
49966915 TACCCTT
1 TACCCTT
49966922 AGTTTGTAGA
Statistics
Matches: 139, Mismatches: 25, Indels: 14
0.78 0.14 0.08
Matches are distributed among these distances:
26 1 0.01
27 112 0.81
28 7 0.05
29 19 0.14
ACGTcount: A:0.38, C:0.20, G:0.07, T:0.35
Consensus pattern (27 bp):
TACCCTTGATTTACAAAATTACTAAAA
Found at i:49966809 original size:54 final size:54
Alignment explanation
Indices: 49966697--49966816 Score: 150
Period size: 54 Copynumber: 2.2 Consensus size: 54
49966687 ATTACCGTTT
* * * * * ***
49966697 TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTATAGAATTACTATTT
1 TACCCTTGATTTACAGAATTACCATTTTACCCTCGATTCACAAAATTACTAAAA
*
49966751 TACCCTTGATTTACAGAATTACTATTTTACCCTCGATTCACAAAATTACTAAAA
1 TACCCTTGATTTACAGAATTACCATTTTACCCTCGATTCACAAAATTACTAAAA
*
49966805 TACCCTTAATTT
1 TACCCTTGATTT
49966817 GTAAAATTAC
Statistics
Matches: 56, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
54 56 1.00
ACGTcount: A:0.32, C:0.23, G:0.07, T:0.39
Consensus pattern (54 bp):
TACCCTTGATTTACAGAATTACCATTTTACCCTCGATTCACAAAATTACTAAAA
Found at i:49966825 original size:81 final size:80
Alignment explanation
Indices: 49966668--49966826 Score: 174
Period size: 81 Copynumber: 2.0 Consensus size: 80
49966658 ATAATTATCG
* * * * **** *
49966668 TTTTACCCCTATTTACATAATTACCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGA
1 TTTTACCCCTATTTACAGAATTACCATTTTACCCTCGATTCACAAAATTACCAAAATACCCTCAA
*
49966733 TTTATAGAATTACTA
66 TTTATAAAATTACTA
* * * *
49966748 TTTTACCCTTGATTTACAGAATTACTATTTTACCCTCGATTCACAAAATTACTAAAATACCCTTA
1 TTTTACCCCT-ATTTACAGAATTACCATTTTACCCTCGATTCACAAAATTACCAAAATACCCTCA
*
49966813 ATTTGTAAAATTAC
65 ATTTATAAAATTAC
49966827 CAAAATACCC
Statistics
Matches: 63, Mismatches: 15, Indels: 1
0.80 0.19 0.01
Matches are distributed among these distances:
80 9 0.14
81 54 0.86
ACGTcount: A:0.31, C:0.22, G:0.06, T:0.40
Consensus pattern (80 bp):
TTTTACCCCTATTTACAGAATTACCATTTTACCCTCGATTCACAAAATTACCAAAATACCCTCAA
TTTATAAAATTACTA
Found at i:49967044 original size:27 final size:27
Alignment explanation
Indices: 49966967--49967044 Score: 81
Period size: 27 Copynumber: 2.9 Consensus size: 27
49966957 AAATGACTAA
* *
49966967 AATACCCCT-AATAGGTAAAAAGACCGT
1 AATACCCCTGTAT-GGTAAAATGACCGT
*
49966994 AA-AGCCCCTGTA-GAGTAAAGTGACCGT
1 AATA-CCCCTGTATG-GTAAAATGACCGT
49967021 AATACCCCTGTATGGTAAAATGAC
1 AATACCCCTGTATGGTAAAATGAC
49967045 GAATATGCCC
Statistics
Matches: 42, Mismatches: 4, Indels: 10
0.75 0.07 0.18
Matches are distributed among these distances:
26 2 0.05
27 37 0.88
28 3 0.07
ACGTcount: A:0.38, C:0.22, G:0.19, T:0.21
Consensus pattern (27 bp):
AATACCCCTGTATGGTAAAATGACCGT
Found at i:49968224 original size:25 final size:25
Alignment explanation
Indices: 49968195--49968242 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
49968185 TTATAATATG
* * *
49968195 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
49968220 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
49968243 GTTTATATAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:49968304 original size:20 final size:20
Alignment explanation
Indices: 49968279--49968348 Score: 115
Period size: 20 Copynumber: 3.5 Consensus size: 20
49968269 ATTTTGATAA
49968279 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
49968299 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
49968319 ACATGATAT-TATGATATGC
1 ACATGATATGTATGATATGC
*
49968338 ACATGAGATGT
1 ACATGATATGT
49968349 TCATAAATGC
Statistics
Matches: 46, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
19 18 0.39
20 28 0.61
ACGTcount: A:0.36, C:0.11, G:0.20, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:49968425 original size:23 final size:23
Alignment explanation
Indices: 49968395--49968557 Score: 267
Period size: 23 Copynumber: 7.1 Consensus size: 23
49968385 AGGAAGTGCA
49968395 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
49968418 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
49968441 AAAGGGCTTATGCCCTAGTTATAT
1 AAAGGGCTTATGCCCCAGTTAT-T
49968465 AAAGGGCTTATGCCCCAGTTA-T
1 AAAGGGCTTATGCCCCAGTTATT
49968487 AAAGGGCTTATGCCCCAGTTA-T
1 AAAGGGCTTATGCCCCAGTTATT
*
49968509 AAAGGGCTTATGCCCCAGTTATA
1 AAAGGGCTTATGCCCCAGTTATT
* *
49968532 AAAGGGCTTTTGCCCCAGTTACT
1 AAAGGGCTTATGCCCCAGTTATT
49968555 AAA
1 AAA
49968558 AGAGGCTAGG
Statistics
Matches: 132, Mismatches: 6, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
22 44 0.33
23 67 0.51
24 21 0.16
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.29
Consensus pattern (23 bp):
AAAGGGCTTATGCCCCAGTTATT
Found at i:49968490 original size:22 final size:22
Alignment explanation
Indices: 49968395--49968579 Score: 255
Period size: 23 Copynumber: 8.0 Consensus size: 22
49968385 AGGAAGTGCA
49968395 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTA-T
49968418 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTA-T
*
49968441 AAAGGGCTTATGCCCTAGTTATAT
1 AAAGGGCTTATGCCCCAG-T-TAT
49968465 AAAGGGCTTATGCCCCAGTTAT
1 AAAGGGCTTATGCCCCAGTTAT
49968487 AAAGGGCTTATGCCCCAGTTAT
1 AAAGGGCTTATGCCCCAGTTAT
49968509 AAAGGGCTTATGCCCCAGTTAT
1 AAAGGGCTTATGCCCCAGTTAT
*
49968531 AAAAGGGCTTTTGCCCCAGTTACT
1 -AAAGGGCTTATGCCCCAGTTA-T
*
49968555 AAAAGAGGC-TAGGCCTCCAGTTAT
1 -AAAG-GGCTTATGCC-CCAGTTAT
49968579 A
1 A
49968580 TGATAAAGCA
Statistics
Matches: 151, Mismatches: 5, Indels: 12
0.90 0.03 0.07
Matches are distributed among these distances:
22 47 0.31
23 62 0.41
24 30 0.20
25 12 0.08
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Consensus pattern (22 bp):
AAAGGGCTTATGCCCCAGTTAT
Found at i:49968806 original size:31 final size:31
Alignment explanation
Indices: 49968771--49968834 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
49968761 CGTTTACAGT
*
49968771 AAAGGCTTCGGCCCAGTAATATGAAATTTGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
49968802 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
49968833 AA
1 AA
49968835 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:49973009 original size:29 final size:29
Alignment explanation
Indices: 49972976--49973057 Score: 155
Period size: 29 Copynumber: 2.8 Consensus size: 29
49972966 TGACGAGATA
*
49972976 GGCACTAAGTGTGCGTGCTGGAAATATAT
1 GGCACTAAGTGTGCATGCTGGAAATATAT
49973005 GGCACTAAGTGTGCATGCTGGAAATATAT
1 GGCACTAAGTGTGCATGCTGGAAATATAT
49973034 GGCACTAAGTGTGCATGCTGGAAA
1 GGCACTAAGTGTGCATGCTGGAAA
49973058 AAAAAATAAT
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 52 1.00
ACGTcount: A:0.29, C:0.15, G:0.30, T:0.26
Consensus pattern (29 bp):
GGCACTAAGTGTGCATGCTGGAAATATAT
Found at i:49980907 original size:29 final size:29
Alignment explanation
Indices: 49980874--49980955 Score: 155
Period size: 29 Copynumber: 2.8 Consensus size: 29
49980864 TGACGAGATA
*
49980874 GGCACTAAGTGTGCGTGCTGGAAATATAT
1 GGCACTAAGTGTGCATGCTGGAAATATAT
49980903 GGCACTAAGTGTGCATGCTGGAAATATAT
1 GGCACTAAGTGTGCATGCTGGAAATATAT
49980932 GGCACTAAGTGTGCATGCTGGAAA
1 GGCACTAAGTGTGCATGCTGGAAA
49980956 AAAAAAATAA
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 52 1.00
ACGTcount: A:0.29, C:0.15, G:0.30, T:0.26
Consensus pattern (29 bp):
GGCACTAAGTGTGCATGCTGGAAATATAT
Found at i:49987189 original size:25 final size:25
Alignment explanation
Indices: 49987157--49987205 Score: 98
Period size: 25 Copynumber: 2.0 Consensus size: 25
49987147 ACCATCTTCA
49987157 TCTAACCCTACACTCCATGTGGAGG
1 TCTAACCCTACACTCCATGTGGAGG
49987182 TCTAACCCTACACTCCATGTGGAG
1 TCTAACCCTACACTCCATGTGGAG
49987206 ATTAAATCAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.24, C:0.33, G:0.18, T:0.24
Consensus pattern (25 bp):
TCTAACCCTACACTCCATGTGGAGG
Found at i:49992138 original size:6 final size:6
Alignment explanation
Indices: 49992095--49992285 Score: 142
Period size: 6 Copynumber: 31.0 Consensus size: 6
49992085 AAGAAACATT
* * * * *
49992095 ATCAGA A-CTAGA ATCAAA ATAAGA ATCAAA ACCAGA ATCAGA ATCAGGTG
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A
* *
49992145 AT-AGA ATCAAA ATCAGA ATCAGA ATCAGA ATTAGGTA A-CAGA ATCAGA
1 ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA
* * *
49992193 ATCAGT ATCAGGTA A-CAGA ATCAGA ATCAGA ACCAGA ATCAGA ATTAGGTA
1 ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A
*
49992244 A-CAGA ATCAGA ATCAGT ATCAGGTA A-CAGA ATCAGA ATCAGA
1 ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA
49992286 GTGTGAATGC
Statistics
Matches: 146, Mismatches: 22, Indels: 34
0.72 0.11 0.17
Matches are distributed among these distances:
5 11 0.08
6 114 0.78
7 13 0.09
8 8 0.05
ACGTcount: A:0.49, C:0.15, G:0.18, T:0.18
Consensus pattern (6 bp):
ATCAGA
Found at i:49992213 original size:62 final size:62
Alignment explanation
Indices: 49992127--49992285 Score: 273
Period size: 62 Copynumber: 2.6 Consensus size: 62
49992117 GAATCAAAAC
* * * * *
49992127 CAGAATCAGAATCAGGTGATAGAATCAAAATCAGAATCAGAATCAGAATTAGGTAACAGAAT
1 CAGAATCAGTATCAGGTAACAGAATCAGAATCAGAACCAGAATCAGAATTAGGTAACAGAAT
49992189 CAGAATCAGTATCAGGTAACAGAATCAGAATCAGAACCAGAATCAGAATTAGGTAACAGAAT
1 CAGAATCAGTATCAGGTAACAGAATCAGAATCAGAACCAGAATCAGAATTAGGTAACAGAAT
49992251 CAGAATCAGTATCAGGTAACAGAATCAGAATCAGA
1 CAGAATCAGTATCAGGTAACAGAATCAGAATCAGA
49992286 GTGTGAATGC
Statistics
Matches: 92, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
62 92 1.00
ACGTcount: A:0.47, C:0.15, G:0.19, T:0.18
Consensus pattern (62 bp):
CAGAATCAGTATCAGGTAACAGAATCAGAATCAGAACCAGAATCAGAATTAGGTAACAGAAT
Found at i:49992224 original size:37 final size:37
Alignment explanation
Indices: 49992148--49992285 Score: 101
Period size: 37 Copynumber: 3.7 Consensus size: 37
49992138 TCAGGTGATA
* *
49992148 GAATCAAAATCAGAATCAGAATCAGAATTAGGTAACA
1 GAATCAGAATCAGAATCAGAATCAGAATCAGGTAACA
*
49992185 GAATCAGAATCAGTATCAGGTAA-CAGAATCA-G-AATCA
1 GAATCAGAATCAGAATCA-G-AATCAGAATCAGGTAA-CA
* *
49992222 GAACCAGAATCAGAATTAGGTAA-CAGAATCA-G-AATCA
1 GAATCAGAATCAGAATCA-G-AATCAGAATCAGGTAA-CA
*
49992259 GTATCAGGTAA-CAGAATCAGAATCAGA
1 GAATCA-G-AATCAGAATCAGAATCAGA
49992286 GTGTGAATGC
Statistics
Matches: 86, Mismatches: 9, Indels: 12
0.80 0.08 0.11
Matches are distributed among these distances:
36 4 0.05
37 62 0.72
38 16 0.19
39 4 0.05
ACGTcount: A:0.48, C:0.15, G:0.19, T:0.18
Consensus pattern (37 bp):
GAATCAGAATCAGAATCAGAATCAGAATCAGGTAACA
Found at i:49992254 original size:25 final size:25
Alignment explanation
Indices: 49992127--49992285 Score: 127
Period size: 25 Copynumber: 6.4 Consensus size: 25
49992117 GAATCAAAAC
* *
49992127 CAGAATCAGAATCAGGTGATAGAAT
1 CAGAATCAGAATCAGGTAACAGAAT
*
49992152 CAAAATCAGAATCA-G-AATCAGAAT
1 CAGAATCAGAATCAGGTAA-CAGAAT
* *
49992176 TAGGTAA-CAGAATCA-G-AATCAGTAT
1 CA-G-AATCAGAATCAGGTAA-CAGAAT
*
49992201 CAGGTAA-CAGAATCA-G-AATCAGAAC
1 CA-G-AATCAGAATCAGGTAA-CAGAAT
*
49992226 CAGAATCAGAATTAGGTAACAGAAT
1 CAGAATCAGAATCAGGTAACAGAAT
*
49992251 CAGAATCAGTATCAGGTAACAGAAT
1 CAGAATCAGAATCAGGTAACAGAAT
49992276 CAGAATCAGA
1 CAGAATCAGA
49992286 GTGTGAATGC
Statistics
Matches: 114, Mismatches: 14, Indels: 12
0.81 0.10 0.09
Matches are distributed among these distances:
23 3 0.03
24 15 0.13
25 92 0.81
26 4 0.04
ACGTcount: A:0.47, C:0.15, G:0.19, T:0.18
Consensus pattern (25 bp):
CAGAATCAGAATCAGGTAACAGAAT
Found at i:49992278 original size:19 final size:19
Alignment explanation
Indices: 49992127--49992259 Score: 121
Period size: 19 Copynumber: 6.8 Consensus size: 19
49992117 GAATCAAAAC
*
49992127 CAGAATCAGAATCAGGTGA
1 CAGAATCAGAATCAGGTAA
* *
49992146 TAGAATCAAAATCA-G-AA
1 CAGAATCAGAATCAGGTAA
*
49992163 TCAGAATCAGAATTAGGTAA
1 -CAGAATCAGAATCAGGTAA
49992183 CAGAATCAGAATCAGTATCAGGTAA
1 CAGAATCAG----A--ATCAGGTAA
49992208 CAGAATCAGAATCA-G-AA
1 CAGAATCAGAATCAGGTAA
*
49992225 CCAGAATCAGAATTAGGTAA
1 -CAGAATCAGAATCAGGTAA
49992245 CAGAATCAGAATCAG
1 CAGAATCAGAATCAG
49992260 TATCAGGTAA
Statistics
Matches: 93, Mismatches: 9, Indels: 24
0.74 0.07 0.19
Matches are distributed among these distances:
17 3 0.03
18 26 0.28
19 41 0.44
20 4 0.04
21 1 0.01
23 1 0.01
25 17 0.18
ACGTcount: A:0.47, C:0.15, G:0.20, T:0.18
Consensus pattern (19 bp):
CAGAATCAGAATCAGGTAA
Found at i:49992836 original size:27 final size:27
Alignment explanation
Indices: 49992806--49993057 Score: 253
Period size: 27 Copynumber: 9.3 Consensus size: 27
49992796 GGGGTAATGT
* *
49992806 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTTTACCCTACAAGGGTATTTC
* *
49992833 GGTAATTCTACCTTAC-AGGAGTATTTC
1 GGTAATTTTACCCTACAAGG-GTATTTC
* *
49992860 AGTAATTTTACCCTACATGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTC
*
49992887 GGT-ATTTCTACCCTATAAGGGTATTTC
1 GGTAATTT-TACCCTACAAGGGTATTTC
* * *
49992914 GATAATTTTACCCTACAGGGGTATTTT
1 GGTAATTTTACCCTACAAGGGTATTTC
* * * * *
49992941 AGTAATTCTACCTTATAAGGGCATTTC
1 GGTAATTTTACCCTACAAGGGTATTTC
*
49992968 GGT-ATTTCTACCCTACAGGGGTATTTC
1 GGTAATTT-TACCCTACAAGGGTATTTC
*
49992995 GGT-ATTTCTACCCTACAGGGGTATTTC
1 GGTAATTT-TACCCTACAAGGGTATTTC
*
49993022 AGT-ATTTCTACCCTACAAGGGTATTTC
1 GGTAATTT-TACCCTACAAGGGTATTTC
*
49993049 AGTAATTTT
1 GGTAATTTT
49993058 GTAAATCGAG
Statistics
Matches: 188, Mismatches: 31, Indels: 12
0.81 0.13 0.05
Matches are distributed among these distances:
26 10 0.05
27 168 0.89
28 10 0.05
ACGTcount: A:0.25, C:0.19, G:0.18, T:0.38
Consensus pattern (27 bp):
GGTAATTTTACCCTACAAGGGTATTTC
Found at i:49992932 original size:81 final size:81
Alignment explanation
Indices: 49992810--49993048 Score: 313
Period size: 81 Copynumber: 3.0 Consensus size: 81
49992800 TAATGTGGTA
* * * * *
49992810 ATTT-TACCCCACAAGGGTATCTCGGTAATTCTACCTTACAGGAGTATTTCAGTAATTTTACCCT
1 ATTTCTACCCTACAAGGGTATTTCGGTAATTTTACCCTACAGGGGTATTTCAGTAATTTTACCCT
*
49992874 ACATGGGTATTTCGGT
66 ACAAGGGTATTTCGGT
* * * * *
49992890 ATTTCTACCCTATAAGGGTATTTCGATAATTTTACCCTACAGGGGTATTTTAGTAATTCTACCTT
1 ATTTCTACCCTACAAGGGTATTTCGGTAATTTTACCCTACAGGGGTATTTCAGTAATTTTACCCT
* *
49992955 ATAAGGGCATTTCGGT
66 ACAAGGGTATTTCGGT
*
49992971 ATTTCTACCCTACAGGGGTATTTCGGT-ATTTCTACCCTACAGGGGTATTTCAGT-ATTTCTACC
1 ATTTCTACCCTACAAGGGTATTTCGGTAATTT-TACCCTACAGGGGTATTTCAGTAATTT-TACC
49993034 CTACAAGGGTATTTC
64 CTACAAGGGTATTTC
49993049 AGTAATTTTG
Statistics
Matches: 135, Mismatches: 21, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
80 11 0.08
81 124 0.92
ACGTcount: A:0.24, C:0.21, G:0.18, T:0.38
Consensus pattern (81 bp):
ATTTCTACCCTACAAGGGTATTTCGGTAATTTTACCCTACAGGGGTATTTCAGTAATTTTACCCT
ACAAGGGTATTTCGGT
Found at i:49993534 original size:54 final size:54
Alignment explanation
Indices: 49993176--49993542 Score: 574
Period size: 54 Copynumber: 6.8 Consensus size: 54
49993166 ACAAATTAGA
* * * *
49993176 GGTATTTTGGTAATTTTACAAACTATGGGTATTTTGATAATTTTACAAACC-AG
1 GGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACCAAG
*
49993229 AGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTATAAACCAAG
1 -GGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACCAAG
* * * *
49993284 GGTATTTTAGTAATTTTACTAACCAGAGGTATTTTGGTAATTTTGTAAACCAAG
1 GGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACCAAG
49993338 GGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACCAAG
1 GGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACCAAG
* * *
49993392 GTTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTGTAAACCAAG
1 GGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACCAAG
* *
49993446 GGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTGATTTTATAAACCAAG
1 GGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACCAAG
* *
49993500 GGTATTTTAGTAATTTTGCAAACCAGGGGTATTTTGGTAATTT
1 GGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTT
49993543 AGTAAACTAA
Statistics
Matches: 288, Mismatches: 24, Indels: 2
0.92 0.08 0.01
Matches are distributed among these distances:
54 286 0.99
55 2 0.01
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.41
Consensus pattern (54 bp):
GGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACCAAG
Found at i:49993549 original size:27 final size:27
Alignment explanation
Indices: 49993093--49993542 Score: 510
Period size: 27 Copynumber: 16.7 Consensus size: 27
49993083 CTGTAAATCG
* ** *
49993093 AGGGTACTTTGGTAATTTTACAAGTCG
1 AGGGTATTTTGGTAATTTTACAAACCA
** *** *
49993120 AGGGTATTTTAATAATTTTACAGGTCG
1 AGGGTATTTTGGTAATTTTACAAACCA
*** * **
49993147 AGGGTATTTCAATAATTTCACAAA-TT
1 AGGGTATTTTGGTAATTTTACAAACCA
*
49993173 AGAGGTATTTTGGTAATTTTACAAACTA
1 AG-GGTATTTTGGTAATTTTACAAACCA
* *
49993201 TGGGTATTTTGATAATTTTACAAACC-
1 AGGGTATTTTGGTAATTTTACAAACCA
*
49993227 AGAGGTATTTTGGTAATTTTACAAACTA
1 AG-GGTATTTTGGTAATTTTACAAACCA
* *
49993255 GGGGTATTTTGGTAATTTTATAAACCA
1 AGGGTATTTTGGTAATTTTACAAACCA
* *
49993282 AGGGTATTTTAGTAATTTTACTAACC-
1 AGGGTATTTTGGTAATTTTACAAACCA
**
49993308 AGAGGTATTTTGGTAATTTTGTAAACCA
1 AG-GGTATTTTGGTAATTTTACAAACCA
49993336 AGGGTATTTTGGTAATTTTACAAACCA
1 AGGGTATTTTGGTAATTTTACAAACCA
* *
49993363 GGGGTATTTTGGTAATTTTATAAACCA
1 AGGGTATTTTGGTAATTTTACAAACCA
* *
49993390 AGGTTATTTTAGTAATTTTACAAACCA
1 AGGGTATTTTGGTAATTTTACAAACCA
* **
49993417 GGGGTATTTTGGTAATTTTGTAAACCA
1 AGGGTATTTTGGTAATTTTACAAACCA
49993444 AGGGTATTTTGGTAATTTTACAAACCA
1 AGGGTATTTTGGTAATTTTACAAACCA
* *
49993471 AGGGTATTTTGGTGATTTTATAAACCA
1 AGGGTATTTTGGTAATTTTACAAACCA
* *
49993498 AGGGTATTTTAGTAATTTTGCAAACCA
1 AGGGTATTTTGGTAATTTTACAAACCA
*
49993525 GGGGTATTTTGGTAATTT
1 AGGGTATTTTGGTAATTT
49993543 AGTAAACTAA
Statistics
Matches: 361, Mismatches: 56, Indels: 12
0.84 0.13 0.03
Matches are distributed among these distances:
26 5 0.01
27 351 0.97
28 5 0.01
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.40
Consensus pattern (27 bp):
AGGGTATTTTGGTAATTTTACAAACCA
Found at i:49999327 original size:24 final size:24
Alignment explanation
Indices: 49999300--49999354 Score: 76
Period size: 24 Copynumber: 2.3 Consensus size: 24
49999290 ACAATGGGAG
*
49999300 GCTCTATAGGTACAACCCTACGCA
1 GCTCTACAGGTACAACCCTACGCA
* *
49999324 GCTCTACAGGTACAGCCCTACGCG
1 GCTCTACAGGTACAACCCTACGCA
49999348 GC-CTACA
1 GCTCTACA
49999355 ACTACCACAT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
23 5 0.18
24 23 0.82
ACGTcount: A:0.25, C:0.36, G:0.20, T:0.18
Consensus pattern (24 bp):
GCTCTACAGGTACAACCCTACGCA
Found at i:50000638 original size:46 final size:43
Alignment explanation
Indices: 50000544--50000634 Score: 101
Period size: 44 Copynumber: 2.1 Consensus size: 43
50000534 TTTTGCATAT
* * **
50000544 AAACTGCCAATGGCTGTGGACACACAACAGAATTTGCAGATGA
1 AAACTGCCAATGGCTGTGGACACACAACAAAATTTGCAAAAAA
* * *
50000587 AAACTGCCACATGGTTTTGGATACACAACAAAATATTGCAAAAAA
1 AAACTGCCA-ATGGCTGTGGACACACAACAAAAT-TTGCAAAAAA
50000632 AAA
1 AAA
50000635 ACTGTCACTA
Statistics
Matches: 39, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
43 9 0.23
44 20 0.51
45 10 0.26
ACGTcount: A:0.44, C:0.19, G:0.18, T:0.20
Consensus pattern (43 bp):
AAACTGCCAATGGCTGTGGACACACAACAAAATTTGCAAAAAA
Found at i:50000906 original size:68 final size:68
Alignment explanation
Indices: 50000786--50000976 Score: 190
Period size: 68 Copynumber: 2.8 Consensus size: 68
50000776 CATGCTTATG
** * * * * * * *
50000786 ACAGATCAATAAGATAGCATTTAATATGCTTATAACAATTCGACACTA-TAGCAAATAATATGCT
1 ACAGATCAATGCGGTAGCAATTAATATGCTTATAACAAATCAATAC-AGTAGCAAATAACATGAT
50000850 CATA
65 CATA
* * *
50000854 ATAGATCAATGCGGTGGTAATTAATATGCTTATAACAGAA-CAATAC-GTTAGCAAATAACATGA
1 ACAGATCAATGCGGTAGCAATTAATATGCTTATAACA-AATCAATACAG-TAGCAAATAACATGA
*
50000917 TTATA
64 TCATA
* * *
50000922 ACATATCAATGCTGTAGCAATTAATATGTTTATAACAAATCAATACAGTAGCAAA
1 ACAGATCAATGCGGTAGCAATTAATATGCTTATAACAAATCAATACAGTAGCAAA
50000977 AGACATGCTT
Statistics
Matches: 99, Mismatches: 19, Indels: 10
0.77 0.15 0.08
Matches are distributed among these distances:
67 2 0.02
68 95 0.96
69 2 0.02
ACGTcount: A:0.44, C:0.14, G:0.13, T:0.29
Consensus pattern (68 bp):
ACAGATCAATGCGGTAGCAATTAATATGCTTATAACAAATCAATACAGTAGCAAATAACATGATC
ATA
Found at i:50000940 original size:34 final size:34
Alignment explanation
Indices: 50000883--50000976 Score: 102
Period size: 34 Copynumber: 2.8 Consensus size: 34
50000873 ATTAATATGC
50000883 TTATAACAGAA-CAATAC-GTTAGCAAATAACATGA
1 TTATAACA-AATCAATACAG-TAGCAAATAACATGA
* * * * * *
50000917 TTATAACATATCAATGCTGTAGCAATTAATATGT
1 TTATAACAAATCAATACAGTAGCAAATAACATGA
50000951 TTATAACAAATCAATACAGTAGCAAA
1 TTATAACAAATCAATACAGTAGCAAA
50000977 AGACATGCTT
Statistics
Matches: 49, Mismatches: 9, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
33 1 0.02
34 47 0.96
35 1 0.02
ACGTcount: A:0.47, C:0.14, G:0.11, T:0.29
Consensus pattern (34 bp):
TTATAACAAATCAATACAGTAGCAAATAACATGA
Found at i:50007979 original size:27 final size:27
Alignment explanation
Indices: 50007931--50008089 Score: 155
Period size: 27 Copynumber: 5.9 Consensus size: 27
50007921 GCGAGGCTGC
* * *
50007931 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGGCAAAGCCACCAGATA
*
50007958 TAGATATTGTGGCAAAGCCACCAGA-A
1 CAGATATTGTGGCAAAGCCACCAGATA
* * *
50007984 CAGATATATGTGGTAGAGCTACCAGAT-
1 CAGATAT-TGTGGCAAAGCCACCAGATA
* *
50008011 CAGATAATCGTGGCATAGCCACCAGA-A
1 CAGAT-ATTGTGGCAAAGCCACCAGATA
*
50008038 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAAAGCCACCAGATA
*
50008065 CAGATAATTGTGGCATAGCCACCAG
1 CAGAT-ATTGTGGCAAAGCCACCAG
50008090 GACGCTTCCT
Statistics
Matches: 110, Mismatches: 15, Indels: 14
0.79 0.11 0.10
Matches are distributed among these distances:
26 9 0.08
27 97 0.88
28 4 0.04
ACGTcount: A:0.35, C:0.21, G:0.24, T:0.20
Consensus pattern (27 bp):
CAGATATTGTGGCAAAGCCACCAGATA
Found at i:50008024 original size:54 final size:54
Alignment explanation
Indices: 50007949--50008089 Score: 212
Period size: 54 Copynumber: 2.6 Consensus size: 54
50007939 GTGACGAAGT
* * * *
50007949 CACCAGATATAGAT-ATTGTGGCAAAGCCACCAGAACAGATATATGTGGTAGAGC
1 CACCAGAT-CAGATAATCGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
*
50008003 TACCAGATCAGATAATCGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
1 CACCAGATCAGATAATCGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
*
50008057 CACCAGATCAGATAATTGTGGCATAGCCACCAG
1 CACCAGATCAGATAATCGTGGCATAGCCACCAG
50008090 GACGCTTCCT
Statistics
Matches: 79, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
53 4 0.05
54 75 0.95
ACGTcount: A:0.35, C:0.22, G:0.23, T:0.19
Consensus pattern (54 bp):
CACCAGATCAGATAATCGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
Found at i:50009835 original size:40 final size:39
Alignment explanation
Indices: 50009780--50009942 Score: 177
Period size: 40 Copynumber: 4.1 Consensus size: 39
50009770 TGAATGATAC
* * *
50009780 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTG-TTATAT
*
50009820 CCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCAATT-GTGCTAG-TGTTATAT
* * * *
50009860 CCGGGCTAAGACCCAAAGGCAATTGTGCAAGT-TACCAAAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGT--TATAT
* *
50009900 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGTTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGTTATAT
50009939 CCGG
1 CCGG
50009943 TTAAATCCCG
Statistics
Matches: 103, Mismatches: 14, Indels: 13
0.79 0.11 0.10
Matches are distributed among these distances:
38 1 0.01
39 10 0.10
40 86 0.83
41 6 0.06
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (39 bp):
CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGTTATAT
Found at i:50011427 original size:28 final size:26
Alignment explanation
Indices: 50011365--50011427 Score: 72
Period size: 26 Copynumber: 2.3 Consensus size: 26
50011355 AAAGTAACCC
** * *
50011365 TAGGGGTATAATGGTAATTTTGCACC
1 TAGGGGTATAACAGTAATTTTCCACA
50011391 TAGGGGTATAACAGTAATTTTCCATACA
1 TAGGGGTATAACAGTAATTTTCC--ACA
50011419 TAGGGGTAT
1 TAGGGGTAT
50011428 TCAAGTAATT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
26 20 0.65
28 11 0.35
ACGTcount: A:0.30, C:0.11, G:0.25, T:0.33
Consensus pattern (26 bp):
TAGGGGTATAACAGTAATTTTCCACA
Found at i:50016441 original size:2 final size:2
Alignment explanation
Indices: 50016434--50016461 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
50016424 ATTGAAAGGG
50016434 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
50016462 GTATTAAAGT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:50019935 original size:27 final size:26
Alignment explanation
Indices: 50019904--50020014 Score: 141
Period size: 27 Copynumber: 4.1 Consensus size: 26
50019894 GTGACGAAGT
50019904 CACCAGAACAGATATATGTGGCAGAGC
1 CACCAGAACAGATA-ATGTGGCAGAGC
* * *
50019931 TACCAGATCAGATAATCGTGGCATAGC
1 CACCAGAACAGATAAT-GTGGCAGAGC
50019958 CACCAGAACAGATATATGTGGCAGAGC
1 CACCAGAACAGATA-ATGTGGCAGAGC
* *
50019985 CACCAGATCAGATAATTGTGGCATAGC
1 CACCAGAACAGATAA-TGTGGCAGAGC
50020012 CAC
1 CAC
50020015 TAGGACGCTT
Statistics
Matches: 73, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
26 3 0.04
27 68 0.93
28 2 0.03
ACGTcount: A:0.35, C:0.23, G:0.23, T:0.18
Consensus pattern (26 bp):
CACCAGAACAGATAATGTGGCAGAGC
Found at i:50019967 original size:54 final size:54
Alignment explanation
Indices: 50019904--50020014 Score: 204
Period size: 54 Copynumber: 2.1 Consensus size: 54
50019894 GTGACGAAGT
*
50019904 CACCAGAACAGATATATGTGGCAGAGCTACCAGATCAGATAATCGTGGCATAGC
1 CACCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAATCGTGGCATAGC
*
50019958 CACCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGC
1 CACCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAATCGTGGCATAGC
50020012 CAC
1 CAC
50020015 TAGGACGCTT
Statistics
Matches: 55, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
54 55 1.00
ACGTcount: A:0.35, C:0.23, G:0.23, T:0.18
Consensus pattern (54 bp):
CACCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAATCGTGGCATAGC
Found at i:50020185 original size:28 final size:26
Alignment explanation
Indices: 50020123--50020185 Score: 72
Period size: 26 Copynumber: 2.3 Consensus size: 26
50020113 AAAGTAACCC
** * *
50020123 TAGGGGTATAATGGTAATTTTGTACC
1 TAGGGGTATAACAGTAATTTTATACA
50020149 TAGGGGTATAACAGTAATTTTCCATACA
1 TAGGGGTATAACAGTAATTTT--ATACA
50020177 TAGGGGTAT
1 TAGGGGTAT
50020186 TCAAGTAATT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
26 19 0.61
28 12 0.39
ACGTcount: A:0.30, C:0.10, G:0.25, T:0.35
Consensus pattern (26 bp):
TAGGGGTATAACAGTAATTTTATACA
Found at i:50021656 original size:26 final size:26
Alignment explanation
Indices: 50021626--50021681 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
50021616 TGAAATGCCC
50021626 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
50021652 ATCATGGAATATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
50021678 ATCA
1 ATCA
50021682 ATTTTTGTCA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.36, C:0.25, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:50026033 original size:7 final size:8
Alignment explanation
Indices: 50026016--50026045 Score: 51
Period size: 8 Copynumber: 3.6 Consensus size: 8
50026006 TTGCTTAATG
50026016 TTTTTGTT
1 TTTTTGTT
50026024 TTTTTGTT
1 TTTTTGTT
50026032 TTTTATGTT
1 TTTT-TGTT
50026041 TTTTT
1 TTTTT
50026046 AAAGAATGCA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
8 13 0.62
9 8 0.38
ACGTcount: A:0.03, C:0.00, G:0.10, T:0.87
Consensus pattern (8 bp):
TTTTTGTT
Found at i:50032996 original size:19 final size:20
Alignment explanation
Indices: 50032961--50033002 Score: 59
Period size: 19 Copynumber: 2.1 Consensus size: 20
50032951 ACCTTTTTTT
*
50032961 ATTTTTAAATATTTTTATTA
1 ATTTTTAAATATTTTTATGA
*
50032981 ATTTTTTAA-ATTTTTATGA
1 ATTTTTAAATATTTTTATGA
50033000 ATT
1 ATT
50033003 ATATGTGGAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 12 0.60
20 8 0.40
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.64
Consensus pattern (20 bp):
ATTTTTAAATATTTTTATGA
Found at i:50039337 original size:40 final size:39
Alignment explanation
Indices: 50039285--50039434 Score: 135
Period size: 40 Copynumber: 3.8 Consensus size: 39
50039275 ACAGTAACTT
* * *
50039285 GCACGAATGCCTTCGGGA-CTTAACCCGGATTTAGTAGCTC
1 GCACGAAAGCCTTC-GGATCTTAGCCCGGATTTAGTA-CTA
* *
50039325 GCTCGAAAGCCTTCGGATCTTAGTCCGGATTTAGTAACTA
1 GCACGAAAGCCTTCGGATCTTAGCCCGGATTTAGT-ACTA
* * * **
50039365 GCACGTATGCCGTCGGATCTTATTCCGGATTTAGTCACTTA
1 GCACGAAAGCCTTCGGATCTTAGCCCGGATTTAGT-AC-TA
50039406 GCAC-AAAGCCTTCGGGA-CTTAGCCCGGAT
1 GCACGAAAGCCTTC-GGATCTTAGCCCGGAT
50039435 ATCATTCGAA
Statistics
Matches: 90, Mismatches: 16, Indels: 8
0.79 0.14 0.07
Matches are distributed among these distances:
39 3 0.03
40 77 0.86
41 10 0.11
ACGTcount: A:0.23, C:0.26, G:0.24, T:0.27
Consensus pattern (39 bp):
GCACGAAAGCCTTCGGATCTTAGCCCGGATTTAGTACTA
Done.