Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr03 135709677
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 135709677
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 165 of 438
Found at i:50482220 original size:32 final size:32
Alignment explanation
Indices: 50482180--50482332 Score: 216
Period size: 32 Copynumber: 4.8 Consensus size: 32
50482170 AAAAAATATG
* *
50482180 ATACATTAGGTTTACGTATAAAAAAGTAGATC
1 ATACATTAGTTTTACATATAAAAAAGTAGATC
* *
50482212 ATACATTAGTTTTGCATATAAAAAAGTAGATA
1 ATACATTAGTTTTACATATAAAAAAGTAGATC
* *
50482244 ATACATTAGGTTCACATATAAAAAAGTAGATC
1 ATACATTAGTTTTACATATAAAAAAGTAGATC
* * *
50482276 ATACATTAGTTTTGCAAATGAAAAAGTAGATC
1 ATACATTAGTTTTACATATAAAAAAGTAGATC
*
50482308 ATACATTAGTTTTACATATTAAAAA
1 ATACATTAGTTTTACATATAAAAAA
50482333 CTAGCATAGT
Statistics
Matches: 105, Mismatches: 16, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
32 105 1.00
ACGTcount: A:0.46, C:0.09, G:0.12, T:0.33
Consensus pattern (32 bp):
ATACATTAGTTTTACATATAAAAAAGTAGATC
Found at i:50482265 original size:64 final size:64
Alignment explanation
Indices: 50482180--50482332 Score: 243
Period size: 64 Copynumber: 2.4 Consensus size: 64
50482170 AAAAAATATG
* *
50482180 ATACATTAGGTTTACGTATAAAAAAGTAGATCATACATTAGTTTTGCATATAAAAAAGTAGATA
1 ATACATTAGGTTTACATATAAAAAAGTAGATCATACATTAGTTTTGCAAATAAAAAAGTAGATA
* * *
50482244 ATACATTAGGTTCACATATAAAAAAGTAGATCATACATTAGTTTTGCAAATGAAAAAGTAGATC
1 ATACATTAGGTTTACATATAAAAAAGTAGATCATACATTAGTTTTGCAAATAAAAAAGTAGATA
* *
50482308 ATACATTAGTTTTACATATTAAAAA
1 ATACATTAGGTTTACATATAAAAAA
50482333 CTAGCATAGT
Statistics
Matches: 81, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
64 81 1.00
ACGTcount: A:0.46, C:0.09, G:0.12, T:0.33
Consensus pattern (64 bp):
ATACATTAGGTTTACATATAAAAAAGTAGATCATACATTAGTTTTGCAAATAAAAAAGTAGATA
Found at i:50483561 original size:18 final size:18
Alignment explanation
Indices: 50483538--50483573 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
50483528 ATAACACAAG
50483538 TGTAAGCATAAATCAGTA
1 TGTAAGCATAAATCAGTA
50483556 TGTAAGCATAAATCAGTA
1 TGTAAGCATAAATCAGTA
50483574 ATACAATAGG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.44, C:0.11, G:0.17, T:0.28
Consensus pattern (18 bp):
TGTAAGCATAAATCAGTA
Found at i:50485681 original size:161 final size:161
Alignment explanation
Indices: 50485411--50485737 Score: 645
Period size: 161 Copynumber: 2.0 Consensus size: 161
50485401 CTAATCACTT
*
50485411 GTTGCAACACATATTTAACTCAAGCTTGGAGTAGTTTCCTTCTTTATCAGAAGCTTAATGAGATA
1 GTTGTAACACATATTTAACTCAAGCTTGGAGTAGTTTCCTTCTTTATCAGAAGCTTAATGAGATA
50485476 CAACATAAAACCATCAAGATTATTAATATTACTGAGAATCAATAGTGAAATTAGTGATACAAAAA
66 CAACATAAAACCATCAAGATTATTAATATTACTGAGAATCAATAGTGAAATTAGTGATACAAAAA
50485541 CTAATGATACAATTGGAATCAGAATCATAGA
131 CTAATGATACAATTGGAATCAGAATCATAGA
50485572 GTTGTAACACATATTTAACTCAAGCTTGGAGTAGTTTCCTTCTTTATCAGAAGCTTAATGAGATA
1 GTTGTAACACATATTTAACTCAAGCTTGGAGTAGTTTCCTTCTTTATCAGAAGCTTAATGAGATA
50485637 CAACATAAAACCATCAAGATTATTAATATTACTGAGAATCAATAGTGAAATTAGTGATACAAAAA
66 CAACATAAAACCATCAAGATTATTAATATTACTGAGAATCAATAGTGAAATTAGTGATACAAAAA
50485702 CTAATGATACAATTGGAATCAGAATCATAGA
131 CTAATGATACAATTGGAATCAGAATCATAGA
50485733 GTTGT
1 GTTGT
50485738 GGAAGTAAAT
Statistics
Matches: 165, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
161 165 1.00
ACGTcount: A:0.41, C:0.14, G:0.15, T:0.31
Consensus pattern (161 bp):
GTTGTAACACATATTTAACTCAAGCTTGGAGTAGTTTCCTTCTTTATCAGAAGCTTAATGAGATA
CAACATAAAACCATCAAGATTATTAATATTACTGAGAATCAATAGTGAAATTAGTGATACAAAAA
CTAATGATACAATTGGAATCAGAATCATAGA
Found at i:50489912 original size:37 final size:36
Alignment explanation
Indices: 50489859--50489948 Score: 144
Period size: 37 Copynumber: 2.4 Consensus size: 36
50489849 TATAAAAGAA
50489859 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATC-G
*
50489896 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCG
*
50489932 GTCTCACCCGGAACATA
1 GTCTTACCCGG-ACATA
50489949 TTCCAAGTTT
Statistics
Matches: 49, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
36 11 0.22
37 38 0.78
ACGTcount: A:0.24, C:0.33, G:0.18, T:0.24
Consensus pattern (36 bp):
GTCTTACCCGGACATAATCTCCACACGTAGTCATCG
Found at i:50490098 original size:49 final size:49
Alignment explanation
Indices: 50490038--50490136 Score: 189
Period size: 49 Copynumber: 2.0 Consensus size: 49
50490028 CATATATTTT
*
50490038 ACATTAGCCATTAGGCCTTATCACATATACATACACTTTCACATTCACC
1 ACATCAGCCATTAGGCCTTATCACATATACATACACTTTCACATTCACC
50490087 ACATCAGCCATTAGGCCTTATCACATATACATACACTTTCACATTCACC
1 ACATCAGCCATTAGGCCTTATCACATATACATACACTTTCACATTCACC
50490136 A
1 A
50490137 TGTGACAGCC
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 49 1.00
ACGTcount: A:0.33, C:0.31, G:0.06, T:0.29
Consensus pattern (49 bp):
ACATCAGCCATTAGGCCTTATCACATATACATACACTTTCACATTCACC
Found at i:50492005 original size:40 final size:40
Alignment explanation
Indices: 50491878--50492007 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
50491868 ATGCTGGAAA
* *
50491878 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * **
50491918 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
50491958 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
50491998 TTATATCCGG
1 TTATATCCGG
50492008 TTGTATTCCG
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 4 0.05
40 72 0.95
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:50500051 original size:40 final size:40
Alignment explanation
Indices: 50499924--50500053 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
50499914 ATGCTGGAAA
* *
50499924 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * **
50499964 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
50500004 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
50500044 TTATATCCGG
1 TTATATCCGG
50500054 TTGTATTCCG
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 4 0.05
40 72 0.95
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:50512651 original size:40 final size:40
Alignment explanation
Indices: 50512524--50512653 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
50512514 ATGCTGGAAA
* *
50512524 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * **
50512564 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
50512604 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
50512644 TTATATCCGG
1 TTATATCCGG
50512654 TTGTATTCCG
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 4 0.05
40 72 0.95
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:50514107 original size:49 final size:49
Alignment explanation
Indices: 50514034--50514157 Score: 203
Period size: 49 Copynumber: 2.5 Consensus size: 49
50514024 TGTTACACAC
*
50514034 CACATCGGCCATTAGGCCTCATCACATATACATACACTTTCACATTAAT
1 CACATCGGCCATTAGGCCTTATCACATATACATACACTTTCACATTAAT
*
50514083 CACATCGGCCATTAGGCCTTATCACATATACATACACTTTCACATTCAT
1 CACATCGGCCATTAGGCCTTATCACATATACATACACTTTCACATTAAT
* * *
50514132 CGCATTGGCCATTCGGCCTTATCACA
1 CACATCGGCCATTAGGCCTTATCACA
50514158 CATATATGTA
Statistics
Matches: 70, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
49 70 1.00
ACGTcount: A:0.29, C:0.31, G:0.10, T:0.29
Consensus pattern (49 bp):
CACATCGGCCATTAGGCCTTATCACATATACATACACTTTCACATTAAT
Found at i:50516443 original size:36 final size:35
Alignment explanation
Indices: 50516380--50516516 Score: 113
Period size: 34 Copynumber: 3.9 Consensus size: 35
50516370 AATGACCATT
* *
50516380 AAAAATATTTTTAGATATTAAATTAAATAATATATA
1 AAAAATATATTTATAT-TTAAATTAAATAATATATA
* *
50516416 ATAAAATATATTTATATTTACATTAAATTATA-AT-
1 A-AAAATATATTTATATTTAAATTAAATAATATATA
* *
50516450 AAAAATCATATTTATATTGAAAATTAAAT-GTATA-A
1 AAAAAT-ATATTTATATT-TAAATTAAATAATATATA
* *
50516485 AAATACT-TATATTATATTTACATTAAATAATA
1 AAA-AATATAT-TTATATTTAAATTAAATAATA
50516517 ACATTAAAAT
Statistics
Matches: 82, Mismatches: 11, Indels: 17
0.75 0.10 0.15
Matches are distributed among these distances:
33 5 0.06
34 25 0.30
35 23 0.28
36 16 0.20
37 13 0.16
ACGTcount: A:0.53, C:0.03, G:0.02, T:0.42
Consensus pattern (35 bp):
AAAAATATATTTATATTTAAATTAAATAATATATA
Found at i:50529266 original size:46 final size:46
Alignment explanation
Indices: 50529165--50529252 Score: 122
Period size: 46 Copynumber: 1.9 Consensus size: 46
50529155 TGTAACCCGC
* * * *
50529165 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGCTCCCAT
* *
50529211 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGCTC
50529253 AACCATCCTA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
46 37 1.00
ACGTcount: A:0.27, C:0.31, G:0.23, T:0.19
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGCTCCCAT
Found at i:50530863 original size:40 final size:40
Alignment explanation
Indices: 50530826--50531005 Score: 233
Period size: 40 Copynumber: 4.5 Consensus size: 40
50530816 GCTACTCGTT
* *
50530826 CAAATGCCTTCGGGA-CATAGCCCGG-TTATAGTAACTCGTA
1 CAAATGCCTTC-GGATCTTAGCCCGGATT-TAGTAACTCGCA
*
50530866 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTC-GGATCTTAGCCCGGATTTAGTAACTCGCA
* * *
50530906 CAAATGCCTTCGAATCTTAGTCCAGATTTAGTAACTCGCA
1 CAAATGCCTTCGGATCTTAGCCCGGATTTAGTAACTCGCA
*
50530946 CAAATGCCTTCGGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGATCTTAGCCCGGATTTAGTAACTCGCA
50530986 CAAATGCCTTCCGGAT-TTAG
1 CAAATGCCTT-CGGATCTTAG
50531006 TAACGGCAAA
Statistics
Matches: 128, Mismatches: 9, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
39 2 0.02
40 119 0.93
41 7 0.05
ACGTcount: A:0.27, C:0.26, G:0.19, T:0.28
Consensus pattern (40 bp):
CAAATGCCTTCGGATCTTAGCCCGGATTTAGTAACTCGCA
Found at i:50534091 original size:40 final size:41
Alignment explanation
Indices: 50534054--50534199 Score: 153
Period size: 40 Copynumber: 3.6 Consensus size: 41
50534044 GCTACTCGTT
*
50534054 CAAATGCCTTCGGGACATAGCT-CGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCTCCGGATT-TAGTAACTCGCA
*
50534094 CAAATGCCTTC-AGATCTTAG-TCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGA-CTTAGCTCCGGATTTAGTAACTCGCA
** *
50534134 CAAATGCCTTCGGGACTTAGC-CCGGAACTAGTCACTAGCGCA
1 CAAATGCCTTCGGGACTTAGCTCCGGATTTAGTAACT--CGCA
*
50534176 -AAATGCCTTCGGGGCTTAGC-CCGG
1 CAAATGCCTTCGGGACTTAGCTCCGG
50534200 TTATCATCAA
Statistics
Matches: 92, Mismatches: 7, Indels: 13
0.82 0.06 0.12
Matches are distributed among these distances:
39 3 0.03
40 58 0.63
41 27 0.29
42 4 0.04
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.24
Consensus pattern (41 bp):
CAAATGCCTTCGGGACTTAGCTCCGGATTTAGTAACTCGCA
Found at i:50553929 original size:40 final size:40
Alignment explanation
Indices: 50553884--50554163 Score: 375
Period size: 40 Copynumber: 7.0 Consensus size: 40
50553874 CTCGATATAT
* *
50553884 TGTATATCCGGGTTAGATCCCGCAGGCTTAGTGTTGGTAA
1 TGTATATCCGGGTTAAATCCCGCAGGCTTAGTGCTGGTAA
*
50553924 TGTATATCCAGGTTAAATCCCGCAGGCTTAGTGCTGGTAA
1 TGTATATCCGGGTTAAATCCCGCAGGCTTAGTGCTGGTAA
*
50553964 TGTATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAA
1 TGTATATCCGGGTTAAATCCCGCAGGCTTAGTGCTGGTAA
* * * *
50554004 AGTATATCTGGGTTAAATCCTGCATGCTTAGTGCTGGTAA
1 TGTATATCCGGGTTAAATCCCGCAGGCTTAGTGCTGGTAA
* * *
50554044 TATATATTCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAA
1 TGTATATCCGGGTTAAATCCCGCAGGCTTAGTGCTGGTAA
*
50554084 AGTATATCCGGGTTAAATCCCGCAGGCTTAGTGCTGGT-A
1 TGTATATCCGGGTTAAATCCCGCAGGCTTAGTGCTGGTAA
* * * * *
50554123 -CTATATCCGGGCCTAAAGTCCTGCAGGCTTTGTGCTTGTAA
1 TGTATATCCGGG-TTAAA-TCCCGCAGGCTTAGTGCTGGTAA
50554164 CGGGATTCGG
Statistics
Matches: 211, Mismatches: 26, Indels: 5
0.87 0.11 0.02
Matches are distributed among these distances:
38 10 0.05
39 5 0.02
40 195 0.92
41 1 0.00
ACGTcount: A:0.22, C:0.20, G:0.26, T:0.31
Consensus pattern (40 bp):
TGTATATCCGGGTTAAATCCCGCAGGCTTAGTGCTGGTAA
Found at i:50563554 original size:25 final size:25
Alignment explanation
Indices: 50563526--50563574 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
50563516 CCAGAGGACC
*
50563526 AATCACATAACTCATGATAATGATT
1 AATCACATAACTCATCATAATGATT
* *
50563551 AATCACATAATTCTTCATAATGAT
1 AATCACATAACTCATCATAATGAT
50563575 AATAATAAAT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.43, C:0.16, G:0.06, T:0.35
Consensus pattern (25 bp):
AATCACATAACTCATCATAATGATT
Found at i:50570059 original size:46 final size:46
Alignment explanation
Indices: 50570009--50570184 Score: 214
Period size: 46 Copynumber: 3.8 Consensus size: 46
50569999 TGGTTGAGCA
*
50570009 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
* * * *
50570055 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAAG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--ATG
*
50570100 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
* * *
50570148 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
50570185 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 5 0.05
45 4 0.04
46 63 0.57
47 29 0.26
48 4 0.04
50 6 0.05
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
Found at i:50570164 original size:93 final size:93
Alignment explanation
Indices: 50570005--50570177 Score: 310
Period size: 93 Copynumber: 1.9 Consensus size: 93
50569995 AGGATGGTTG
* * *
50570005 AGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 AGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAG
50570070 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
50570098 AGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAGCTCGTTGAG
1 AGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAG
50570163 TTGAGTCCGAGTTCG
66 TTGAGTCCGAGTTCG
50570178 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (93 bp):
AGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:50573915 original size:25 final size:25
Alignment explanation
Indices: 50573887--50573935 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
50573877 CCAGAGGACC
*
50573887 AATCACATAACTCATGATAATGATT
1 AATCACATAACTCATCATAATGATT
* *
50573912 AATCACGTAATTCATCATAATGAT
1 AATCACATAACTCATCATAATGAT
50573936 AATAATAAAG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.43, C:0.16, G:0.08, T:0.33
Consensus pattern (25 bp):
AATCACATAACTCATCATAATGATT
Found at i:50581826 original size:40 final size:40
Alignment explanation
Indices: 50581771--50581945 Score: 287
Period size: 40 Copynumber: 4.4 Consensus size: 40
50581761 TATGTGCATA
*
50581771 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGCAG
1 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
* *
50581811 GCATTCGTGTGGGTTATTATAACCGGGTTAAGTCTCGAAG
1 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
* *
50581851 GCATTCGTGCGGGTTATAATAATCGGGTTAAGTCCCGAAG
1 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
*
50581891 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCAGAAG
1 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
*
50581931 GCATTCGTGCTGGTT
1 GCATTCGTGCGGGTT
50581946 GTTACATCGA
Statistics
Matches: 124, Mismatches: 11, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 124 1.00
ACGTcount: A:0.22, C:0.18, G:0.30, T:0.30
Consensus pattern (40 bp):
GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
Found at i:50598640 original size:40 final size:40
Alignment explanation
Indices: 50598585--50598679 Score: 181
Period size: 40 Copynumber: 2.4 Consensus size: 40
50598575 TATGTGCATA
50598585 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
1 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
50598625 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
1 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
*
50598665 GCATTCGTGCTGGTT
1 GCATTCGTGCGGGTT
50598680 GTTACATCCG
Statistics
Matches: 54, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 54 1.00
ACGTcount: A:0.20, C:0.20, G:0.31, T:0.29
Consensus pattern (40 bp):
GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
Found at i:50604482 original size:20 final size:20
Alignment explanation
Indices: 50604439--50604482 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 20
50604429 GCACATGTAT
* * *
50604439 TCATAAAATTTTAGAATTTT
1 TCATAAAATTTTACAACTTG
*
50604459 TCATCAAATTTTACAACTTG
1 TCATAAAATTTTACAACTTG
50604479 TCAT
1 TCAT
50604483 TTTAGCCCCT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.36, C:0.14, G:0.05, T:0.45
Consensus pattern (20 bp):
TCATAAAATTTTACAACTTG
Found at i:50611656 original size:40 final size:40
Alignment explanation
Indices: 50611590--50611756 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
50611580 AAATTGAATG
* * *
50611590 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
50611629 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
50611669 ATATCCGGGCTAAGACCCGAAAGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
50611709 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
50611749 ATATCCGG
1 ATATCCGG
50611757 TTATATTCCG
Statistics
Matches: 103, Mismatches: 20, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
39 16 0.16
40 85 0.83
41 2 0.02
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:50614254 original size:21 final size:21
Alignment explanation
Indices: 50614230--50614271 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
50614220 GACTTTAATG
50614230 GTATTTAACATGGCCTAATTA
1 GTATTTAACATGGCCTAATTA
*
50614251 GTATTTCACATGGCCTAATTA
1 GTATTTAACATGGCCTAATTA
50614272 TACTCTTAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.31, C:0.17, G:0.14, T:0.38
Consensus pattern (21 bp):
GTATTTAACATGGCCTAATTA
Found at i:50617868 original size:47 final size:46
Alignment explanation
Indices: 50617770--50617889 Score: 138
Period size: 47 Copynumber: 2.6 Consensus size: 46
50617760 GAGGCCAATT
* *
50617770 CATGTCCCAGACATGTCTTACACTAGCTCTCGTCTCAATTTCGATGC
1 CATGTCCCAGACATGTCTTACACTAGCTCTCG-ATCAATTCCGATGC
*
50617817 CATGTCCCAGACATGGTTTTACACTAGCTCTC-AT-AATGTGGCCGATG-
1 CATGTCCCAGACAT-GTCTTACACTAGCTCTCGATCAAT-T--CCGATGC
*
50617864 CATGTCCCAAACATGTCTTACACTAG
1 CATGTCCCAGACATGTCTTACACTAG
50617890 TGCACAAATA
Statistics
Matches: 64, Mismatches: 5, Indels: 9
0.82 0.06 0.12
Matches are distributed among these distances:
45 3 0.05
46 13 0.20
47 27 0.42
48 21 0.33
ACGTcount: A:0.24, C:0.29, G:0.17, T:0.30
Consensus pattern (46 bp):
CATGTCCCAGACATGTCTTACACTAGCTCTCGATCAATTCCGATGC
Found at i:50625070 original size:48 final size:48
Alignment explanation
Indices: 50624855--50625085 Score: 161
Period size: 48 Copynumber: 4.8 Consensus size: 48
50624845 GATTAAGATA
* * * * * *
50624855 CCGATGCCATGTCCCAGACATGGACTTACACT-AGCTCATCCATCAAGT-
1 CCGATGCCATGTCCCAAACATGGTCTTACACTGA-CACTTCTAT-ACGTG
* *
50624903 -CGATGCCATGTCCCAAACATGGTCTTACACTG--ACTATCGAAATCAAG-G
1 CCGATGCCATGTCCCAAACATGGTCTTACACTGACACT-TC--TAT-ACGTG
* * * * * * *
50624951 CCGACGCCATGTCCCAAACTTTGTCTTACACT-AGCTCTCACATATCCATG
1 CCGATGCCATGTCCCAAACATGGTCTTACACTGA-CACT-TC-TATACGTG
* *
50625001 CCGATGCCATGTCCTAGACATGGTCTTACACTGACACTTCTATACGTG
1 CCGATGCCATGTCCCAAACATGGTCTTACACTGACACTTCTATACGTG
* *
50625049 CTGATGCCATGTCCCAAACATGGTCTTACACTAACAC
1 CCGATGCCATGTCCCAAACATGGTCTTACACTGACAC
50625086 ATCTCGTAGC
Statistics
Matches: 144, Mismatches: 28, Indels: 22
0.74 0.14 0.11
Matches are distributed among these distances:
45 1 0.01
46 2 0.01
47 29 0.20
48 45 0.31
49 29 0.20
50 34 0.24
51 4 0.03
ACGTcount: A:0.27, C:0.32, G:0.16, T:0.26
Consensus pattern (48 bp):
CCGATGCCATGTCCCAAACATGGTCTTACACTGACACTTCTATACGTG
Found at i:50625148 original size:46 final size:47
Alignment explanation
Indices: 50624855--50625266 Score: 192
Period size: 46 Copynumber: 8.7 Consensus size: 47
50624845 GATTAAGATA
* * *
50624855 CCGATGCCATGTCCCAGACATGGACTTACACTAGCTC-AT-CCATC-AAG
1 CCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTATATC-TCGAGG
* * * ** *
50624902 TCGATGCCATGTCCCAAACATGGTCTTACACT-G-ACTATCGAAATCAAGG
1 CCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTAT--ATCTCGAGG
* * * * * * *
50624951 CCGACGCCATGTCCCAAACTTTGTCTTACACTAGCTCTCACATATCCATG
1 CCGATG-CATGTCCCAGAC-ATGTCTTACACTAGCTCT-ATATCTCGAGG
* * *
50625001 CCGATGCCATGTCCTAGACATGGTCTTACACTGACACTTCTATA---CG-TG
1 CCGATG-CATGTCCCAGACAT-GTCTTACACT-A-GC-TCTATATCTCGAGG
* * * *
50625049 CTGATGCCATGTCCCAAACATGGTCTTACACTA--AC-ACATCTCGTA-G
1 CCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTATATCTCG-AGG
** * *
50625095 CTAATGCATGTCCCAGATATGTCTTACACTGGCT-TATATCTCGAGG
1 CCGATGCATGTCCCAGACATGTCTTACACTAGCTCTATATCTCGAGG
** * *
50625141 CCGATGCATGTCCCAGACATGTCTTACACTAGCTCT-CGTCTCAATG
1 CCGATGCATGTCCCAGACATGTCTTACACTAGCTCTATATCTCGAGG
* * * *
50625187 CCGATACCATGTCCCAGACATGGTTTTACACTAGCTCTCATA-AT-GTGG
1 CCGAT-GCATGTCCCAGACAT-GTCTTACACTAGCTCT-ATATCTCGAGG
*
50625235 CCGATGCATGTCCCAAACATGTCTTACACTAG
1 CCGATGCATGTCCCAGACATGTCTTACACTAG
50625267 TGCACAAATA
Statistics
Matches: 286, Mismatches: 52, Indels: 55
0.73 0.13 0.14
Matches are distributed among these distances:
42 2 0.01
43 1 0.00
44 10 0.03
45 16 0.06
46 69 0.24
47 58 0.20
48 54 0.19
49 32 0.11
50 34 0.12
51 3 0.01
52 4 0.01
53 3 0.01
ACGTcount: A:0.26, C:0.30, G:0.17, T:0.27
Consensus pattern (47 bp):
CCGATGCATGTCCCAGACATGTCTTACACTAGCTCTATATCTCGAGG
Found at i:50627034 original size:27 final size:27
Alignment explanation
Indices: 50627004--50627058 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
50626994 AGAAACTTAA
50627004 TACATGCTTGAAATGGTGATAAAGGGG
1 TACATGCTTGAAATGGTGATAAAGGGG
50627031 TACATGCTTGAAATGGTGATAAAGGGG
1 TACATGCTTGAAATGGTGATAAAGGGG
50627058 T
1 T
50627059 TAAGTCCCGA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.33, C:0.07, G:0.33, T:0.27
Consensus pattern (27 bp):
TACATGCTTGAAATGGTGATAAAGGGG
Found at i:50634122 original size:20 final size:21
Alignment explanation
Indices: 50634083--50634128 Score: 58
Period size: 20 Copynumber: 2.2 Consensus size: 21
50634073 ATGGACTAAA
*
50634083 ATGAAAAGTTGTTAAAATTTG
1 ATGAAAAATTGTTAAAATTTG
* *
50634104 ATGAAAAATT-TTGAAATTTT
1 ATGAAAAATTGTTAAAATTTG
50634124 ATGAA
1 ATGAA
50634129 TACATGTGCT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
20 13 0.59
21 9 0.41
ACGTcount: A:0.46, C:0.00, G:0.15, T:0.39
Consensus pattern (21 bp):
ATGAAAAATTGTTAAAATTTG
Found at i:50637537 original size:30 final size:30
Alignment explanation
Indices: 50637501--50637601 Score: 118
Period size: 28 Copynumber: 3.5 Consensus size: 30
50637491 GACAAGATTG
* * *
50637501 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
50637531 GCACTAAGTGTGCGAGTTT--GATTCTATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
50637559 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
50637588 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
50637602 GATTCACTAT
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
28 23 0.38
29 19 0.31
30 19 0.31
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.29
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGTTTAAAATTATATA
Found at i:50637613 original size:29 final size:28
Alignment explanation
Indices: 50637530--50637605 Score: 75
Period size: 29 Copynumber: 2.7 Consensus size: 28
50637520 AAAATTGTAC
* *
50637530 AGCACTAAGTGTGCGAGTTTGAT-TCTAT
1 AGCACTAAGTGTGCG-GATTGATATATAT
* *
50637558 AGCACTAAGTGTGC-GAGCTGAAAATATAT
1 AGCACTAAGTGTGCGGA-TTG-ATATATAT
50637587 AGCACTAAGTGTGCGGATT
1 AGCACTAAGTGTGCGGATT
50637606 CACTATATGC
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
26 1 0.03
27 2 0.05
28 15 0.38
29 19 0.49
30 2 0.05
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGGATTGATATATAT
Found at i:50656293 original size:40 final size:39
Alignment explanation
Indices: 50656128--50656311 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
50656118 AAATTGAATG
* * *
50656128 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
50656168 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
50656208 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
50656248 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
50656287 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
50656312 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:50656336 original size:80 final size:81
Alignment explanation
Indices: 50656168--50656356 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
50656158 GCTGGAAATT
* * * *
50656168 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
50656233 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
50656249 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
50656312 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
50656328 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
50656357 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:50666619 original size:29 final size:29
Alignment explanation
Indices: 50666577--50666652 Score: 143
Period size: 29 Copynumber: 2.6 Consensus size: 29
50666567 GAATAATTAT
*
50666577 CATGGCCCGAAGCCAAATCATCTGATATG
1 CATGGCCCGAAGCCAAATCATCCGATATG
50666606 CATGGCCCGAAGCCAAATCATCCGATATG
1 CATGGCCCGAAGCCAAATCATCCGATATG
50666635 CATGGCCCGAAGCCAAAT
1 CATGGCCCGAAGCCAAAT
50666653 TGTTATAACT
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 46 1.00
ACGTcount: A:0.32, C:0.30, G:0.21, T:0.17
Consensus pattern (29 bp):
CATGGCCCGAAGCCAAATCATCCGATATG
Found at i:50673535 original size:46 final size:43
Alignment explanation
Indices: 50673424--50673631 Score: 159
Period size: 46 Copynumber: 4.6 Consensus size: 43
50673414 ATGTTTGTGT
* * ** *
50673424 CGATGCATGTCCCAGACATGGTCTTACACTGACACCTCTCATAGC
1 CGATACATGTCCCAGACAT-GTCTTACACTGGCTTCTCTCA-GGC
* * *
50673469 CGGTGCATATCCCAGACATGTCTTACACTGGCTTACATCTCGAGGC
1 CGATACATGTCCCAGACATGTCTTACACTGGCTT-C-TCTC-AGGC
* * *
50673515 CGATACATGTCCCAAACATGTCTTACACTAGCTCTCGTCTCAATGC
1 CGATACATGTCCCAGACATGTCTTACACTGGCT-TC-TCTC-AGGC
* * * *
50673561 CGATGCCATGTCCCATACATGGTCTTACATTGGC-TCTCAT-AGGT
1 CGAT-ACATGTCCCAGACAT-GTCTTACACTGGCTTCTC-TCAGGC
*
50673605 CGATGCATGTCCCAGACATGTCTTACA
1 CGATACATGTCCCAGACATGTCTTACA
50673632 ATAGCACACA
Statistics
Matches: 134, Mismatches: 22, Indels: 17
0.77 0.13 0.10
Matches are distributed among these distances:
42 8 0.06
43 13 0.10
44 18 0.13
45 20 0.15
46 49 0.37
47 15 0.11
48 11 0.08
ACGTcount: A:0.24, C:0.31, G:0.18, T:0.27
Consensus pattern (43 bp):
CGATACATGTCCCAGACATGTCTTACACTGGCTTCTCTCAGGC
Found at i:50673614 original size:90 final size:90
Alignment explanation
Indices: 50673366--50673638 Score: 272
Period size: 90 Copynumber: 3.0 Consensus size: 90
50673356 AAACATGGGG
** *
50673366 TCAAGTGCCGATGCCATGTCCCAGACATGGTCTTACACAAGCTCTAGCATGTTTGTGTCGATGCA
1 TCAA-TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTA-CA--TTAG-GTCGATGCA
50673431 TGTCCCAGACATGGTCTTACACT-GACACCTC
61 TGTCCCAGACAT-GTCTTACACTAG-CACCTC
* * * *
50673462 TC-ATAGCCGGTG-CATATCCCAGACAT-GTCTTACACTGGCT-TACATCTCGAGGCCGATACAT
1 TCAAT-GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTACAT-T--AGGTCGATGCAT
* *
50673523 GTCCCAAACATGTCTTACACTAGCTCTCGTC
62 GTCCCAGACATGTCTTACACTAGCAC-C-TC
* *
50673554 TCAATGCCGATGCCATGTCCCATACATGGTCTTACATTGGCTCT-CA-TAGGTCGATGCATGTCC
1 TCAATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTACATTAGGTCGATGCATGTCC
*
50673617 CAGACATGTCTTACAATAGCAC
66 CAGACATGTCTTACACTAGCAC
50673639 ACAAATAACC
Statistics
Matches: 148, Mismatches: 18, Indels: 28
0.76 0.09 0.14
Matches are distributed among these distances:
89 1 0.01
90 46 0.31
91 22 0.15
92 14 0.09
93 26 0.18
94 29 0.20
95 8 0.05
96 2 0.01
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (90 bp):
TCAATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTACATTAGGTCGATGCATGTCC
CAGACATGTCTTACACTAGCACCTC
Found at i:50680044 original size:52 final size:52
Alignment explanation
Indices: 50679984--50680108 Score: 223
Period size: 52 Copynumber: 2.4 Consensus size: 52
50679974 CGTGGTTAGA
50679984 CCATGGCAATGTGCTAAGTGAAATAAGACCATGGCATCTAAGTGAAATAAGT
1 CCATGGCAATGTGCTAAGTGAAATAAGACCATGGCATCTAAGTGAAATAAGT
* *
50680036 CCATGGCAATGTGCTAAGAGAAATAAGTCCATGGCATCTAAGTGAAATAAGT
1 CCATGGCAATGTGCTAAGTGAAATAAGACCATGGCATCTAAGTGAAATAAGT
*
50680088 CCATGGCATTGTGCTAAGTGA
1 CCATGGCAATGTGCTAAGTGA
50680109 GAAATTTCCT
Statistics
Matches: 69, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
52 69 1.00
ACGTcount: A:0.36, C:0.16, G:0.24, T:0.24
Consensus pattern (52 bp):
CCATGGCAATGTGCTAAGTGAAATAAGACCATGGCATCTAAGTGAAATAAGT
Found at i:50680061 original size:28 final size:28
Alignment explanation
Indices: 50679984--50680108 Score: 167
Period size: 24 Copynumber: 4.8 Consensus size: 28
50679974 CGTGGTTAGA
*
50679984 CCATGGCAATGTGCTAAGTGAAATAAGA
1 CCATGGCAATGTGCTAAGTGAAATAAGT
50680012 CCATGGC-A--T-CTAAGTGAAATAAGT
1 CCATGGCAATGTGCTAAGTGAAATAAGT
*
50680036 CCATGGCAATGTGCTAAGAGAAATAAGT
1 CCATGGCAATGTGCTAAGTGAAATAAGT
50680064 CCATGGC-A--T-CTAAGTGAAATAAGT
1 CCATGGCAATGTGCTAAGTGAAATAAGT
*
50680088 CCATGGCATTGTGCTAAGTGA
1 CCATGGCAATGTGCTAAGTGA
50680109 GAAATTTCCT
Statistics
Matches: 85, Mismatches: 4, Indels: 16
0.81 0.04 0.15
Matches are distributed among these distances:
24 42 0.49
25 3 0.04
27 4 0.05
28 36 0.42
ACGTcount: A:0.36, C:0.16, G:0.24, T:0.24
Consensus pattern (28 bp):
CCATGGCAATGTGCTAAGTGAAATAAGT
Found at i:50683523 original size:37 final size:37
Alignment explanation
Indices: 50683470--50683560 Score: 155
Period size: 37 Copynumber: 2.4 Consensus size: 37
50683460 TATAAAAGAA
50683470 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
*
50683507 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
*
50683544 GTCTCACCCGGAACATA
1 GTCTTACCCGG-ACATA
50683561 TTCCAAGTTT
Statistics
Matches: 50, Mismatches: 3, Indels: 1
0.93 0.06 0.02
Matches are distributed among these distances:
37 46 0.92
38 4 0.08
ACGTcount: A:0.24, C:0.33, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
Found at i:50683711 original size:49 final size:49
Alignment explanation
Indices: 50683656--50684014 Score: 598
Period size: 49 Copynumber: 7.4 Consensus size: 49
50683646 TTTTACATTA
*
50683656 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTCATCACATATACATACACTTTCACATTCACCACATCG
*
50683705 GCCATTAGGCCTTATCACATATACATA-ACTTTCACATTCACCACATCG
1 GCCATTAGGCCTCATCACATATACATACACTTTCACATTCACCACATCG
*
50683753 GCCATTAGGCCTCATCACATATACATACACTTTCACATTCATCACATCG
1 GCCATTAGGCCTCATCACATATACATACACTTTCACATTCACCACATCG
50683802 GCCATTAGGCCTCATCACATATACAT-CACTTTCACATTCACCACATCG
1 GCCATTAGGCCTCATCACATATACATACACTTTCACATTCACCACATCG
50683850 GCCATTAGGCCTCATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTCATCACATATACATACACTTTCACATTCACCACATCG
* *
50683899 GCCATTAGGCCTCATCACATATACATCCACTTTCACATTCATCACATCG
1 GCCATTAGGCCTCATCACATATACATACACTTTCACATTCACCACATCG
* ** *
50683948 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCA-TGCATTG
1 GCCATTAGGCCTCATCACATATACATACACTTTCACATTCACCACATCG
* *
50683996 GCCATTCGGCCTTATCACA
1 GCCATTAGGCCTCATCACA
50684015 CATATATGTA
Statistics
Matches: 297, Mismatches: 11, Indels: 5
0.95 0.04 0.02
Matches are distributed among these distances:
48 116 0.39
49 181 0.61
ACGTcount: A:0.30, C:0.33, G:0.09, T:0.29
Consensus pattern (49 bp):
GCCATTAGGCCTCATCACATATACATACACTTTCACATTCACCACATCG
Found at i:50683757 original size:97 final size:97
Alignment explanation
Indices: 50683656--50684014 Score: 603
Period size: 97 Copynumber: 3.7 Consensus size: 97
50683646 TTTTACATTA
* *
50683656 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATC
1 GCCATTAGGCCTCATCACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTCATC
*
50683721 ACATATACATAACTTTCACATTCACCACATCG
66 ACATATACATCACTTTCACATTCACCACATCG
*
50683753 GCCATTAGGCCTCATCACATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTCATC
1 GCCATTAGGCCTCATCACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTCATC
50683818 ACATATACATCACTTTCACATTCACCACATCG
66 ACATATACATCACTTTCACATTCACCACATCG
50683850 GCCATTAGGCCTCATCACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTCATC
1 GCCATTAGGCCTCATCACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTCATC
*
50683915 ACATATACATCCACTTTCACATTCATCACATCG
66 ACATATACAT-CACTTTCACATTCACCACATCG
* ** * * *
50683948 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCA-TGCATTGGCCATTCGGCCTTATC
1 GCCATTAGGCCTCATCACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTCATC
50684012 ACA
66 ACA
50684015 CATATATGTA
Statistics
Matches: 249, Mismatches: 12, Indels: 2
0.95 0.05 0.01
Matches are distributed among these distances:
97 188 0.76
98 61 0.24
ACGTcount: A:0.30, C:0.33, G:0.09, T:0.29
Consensus pattern (97 bp):
GCCATTAGGCCTCATCACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTCATC
ACATATACATCACTTTCACATTCACCACATCG
Found at i:50683907 original size:146 final size:146
Alignment explanation
Indices: 50683656--50684014 Score: 632
Period size: 146 Copynumber: 2.5 Consensus size: 146
50683646 TTTTACATTA
50683656 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATC
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATC
50683721 ACATATACATAACTTTCACATTCACCACATCGGCCATTAGGCCTCATCACATATACATACACTTT
66 ACATATACATAACTTTCACATTCACCACATCGGCCATTAGGCCTCATCACATATACATACACTTT
50683786 CACATTCATCACATCG
131 CACATTCATCACATCG
* *
50683802 GCCATTAGGCCTCATCACATATACAT-CACTTTCACATTCACCACATCGGCCATTAGGCCTCATC
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATC
*
50683866 ACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTCATCACATATACATCCACTT
66 ACATATACATA-ACTTTCACATTCACCACATCGGCCATTAGGCCTCATCACATATACATACACTT
50683931 TCACATTCATCACATCG
130 TCACATTCATCACATCG
** * *
50683948 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCA-TGCATTGGCCATTCGGCCTTATC
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATC
50684012 ACA
66 ACA
50684015 CATATATGTA
Statistics
Matches: 202, Mismatches: 9, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
145 48 0.24
146 140 0.69
147 14 0.07
ACGTcount: A:0.30, C:0.33, G:0.09, T:0.29
Consensus pattern (146 bp):
GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATC
ACATATACATAACTTTCACATTCACCACATCGGCCATTAGGCCTCATCACATATACATACACTTT
CACATTCATCACATCG
Found at i:50686782 original size:40 final size:41
Alignment explanation
Indices: 50686738--50686836 Score: 114
Period size: 41 Copynumber: 2.4 Consensus size: 41
50686728 TCGATTGTCC
* * **
50686738 TCGGGACATAGCCCGG-TTATAGTTA-TTCGCACAATTGCCT
1 TCGGGACATAGCCCGGATT-TAGTAACTTAGCACAAAAGCCT
50686778 TCGGGA-ATTAGCCCGGATTTAGTAACTTAGCACAAAAGCCT
1 TCGGGACA-TAGCCCGGATTTAGTAACTTAGCACAAAAGCCT
*
50686819 TCGGGACTTAGCCCGGAT
1 TCGGGACATAGCCCGGAT
50686837 ACCATTCGAA
Statistics
Matches: 50, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
39 1 0.02
40 19 0.38
41 30 0.60
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.26
Consensus pattern (41 bp):
TCGGGACATAGCCCGGATTTAGTAACTTAGCACAAAAGCCT
Found at i:50687356 original size:29 final size:29
Alignment explanation
Indices: 50687320--50687538 Score: 363
Period size: 29 Copynumber: 7.7 Consensus size: 29
50687310 TGTTGAAAAA
* *
50687320 CTCGCACACACAGTGCCTCAATTACTGAT
1 CTCGCACACATAGTGCCTCGATTACTGAT
50687349 CTCGCACACATAGTGCCTCGATTAC-GAT
1 CTCGCACACATAGTGCCTCGATTACTGAT
50687377 CTCGCACACATAGTGCCTCGATTAC-GAT
1 CTCGCACACATAGTGCCTCGATTACTGAT
*
50687405 CTCACACACATAGTGCCTCGATTAC-GAT
1 CTCGCACACATAGTGCCTCGATTACTGAT
50687433 CTCGCACACATAGTGCCTCGATTACTGAT
1 CTCGCACACATAGTGCCTCGATTACTGAT
* * *
50687462 CTCACACACATAGTGCCTCAATTATTGAT
1 CTCGCACACATAGTGCCTCGATTACTGAT
50687491 CTCGCACACATAGTGCCTCGATTACTGAT
1 CTCGCACACATAGTGCCTCGATTACTGAT
50687520 CTCGCACACATAGTGCCTC
1 CTCGCACACATAGTGCCTC
50687539 AATCATTCGC
Statistics
Matches: 179, Mismatches: 10, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
28 82 0.46
29 97 0.54
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (29 bp):
CTCGCACACATAGTGCCTCGATTACTGAT
Found at i:50687425 original size:56 final size:57
Alignment explanation
Indices: 50687320--50687538 Score: 368
Period size: 56 Copynumber: 3.8 Consensus size: 57
50687310 TGTTGAAAAA
* * *
50687320 CTCGCACACACAGTGCCTCAATTACTGATCTCGCACACATAGTGCCTCGATTACGAT
1 CTCGCACACATAGTGCCTCGATTACTGATCTCACACACATAGTGCCTCGATTACGAT
50687377 CTCGCACACATAGTGCCTCGATTAC-GATCTCACACACATAGTGCCTCGATTACGAT
1 CTCGCACACATAGTGCCTCGATTACTGATCTCACACACATAGTGCCTCGATTACGAT
* *
50687433 CTCGCACACATAGTGCCTCGATTACTGATCTCACACACATAGTGCCTCAATTATTGAT
1 CTCGCACACATAGTGCCTCGATTACTGATCTCACACACATAGTGCCTCGATTA-CGAT
*
50687491 CTCGCACACATAGTGCCTCGATTACTGATCTCGCACACATAGTGCCTC
1 CTCGCACACATAGTGCCTCGATTACTGATCTCACACACATAGTGCCTC
50687539 AATCATTCGC
Statistics
Matches: 154, Mismatches: 6, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
56 55 0.36
57 49 0.32
58 50 0.32
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (57 bp):
CTCGCACACATAGTGCCTCGATTACTGATCTCACACACATAGTGCCTCGATTACGAT
Found at i:50689685 original size:37 final size:37
Alignment explanation
Indices: 50689632--50689722 Score: 155
Period size: 37 Copynumber: 2.4 Consensus size: 37
50689622 TATAAAAGAA
50689632 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
*
50689669 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
*
50689706 GTCTCACCCGGAACATA
1 GTCTTACCCGG-ACATA
50689723 TTCCAAGTTT
Statistics
Matches: 50, Mismatches: 3, Indels: 1
0.93 0.06 0.02
Matches are distributed among these distances:
37 46 0.92
38 4 0.08
ACGTcount: A:0.24, C:0.33, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
Found at i:50689873 original size:49 final size:49
Alignment explanation
Indices: 50689818--50690267 Score: 731
Period size: 49 Copynumber: 9.4 Consensus size: 49
50689808 TTTTACATTA
*
50689818 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTCATCACATATACATACACTTTCACATTCACCACATCG
*
50689867 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTCATCACATATACATACACTTTCACATTCACCACATCG
*
50689916 ACCATTAGGCCTCATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTCATCACATATACATACACTTTCACATTCACCACATCG
50689965 GCCATTAGGCCTCATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTCATCACATATACATACACTTTCACATTCACCACATCG
50690014 GCCATTAGGCCTCATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTCATCACATATACATACACTTTCACATTCACCACATCG
* *
50690063 GCCATTAGGCCTCATCACATATACATCCACTTTCACATTCATCACATCG
1 GCCATTAGGCCTCATCACATATACATACACTTTCACATTCACCACATCG
50690112 GCCATTAGGCCTCATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTCATCACATATACATACACTTTCACATTCACCACATCG
*
50690161 GCCATTAGG-C-C-T--C--AT-C--ACACTTTCACATTCATCACATCG
1 GCCATTAGGCCTCATCACATATACATACACTTTCACATTCACCACATCG
* * *
50690200 GCCATTAGGCCTCATCACATATACATACACTTTCACATTCATCGCATTG
1 GCCATTAGGCCTCATCACATATACATACACTTTCACATTCACCACATCG
* *
50690249 GCCATTCGGCCTTATCACA
1 GCCATTAGGCCTCATCACA
50690268 CATATATGTA
Statistics
Matches: 379, Mismatches: 12, Indels: 20
0.92 0.03 0.05
Matches are distributed among these distances:
39 31 0.08
40 1 0.00
41 2 0.01
42 3 0.01
44 2 0.01
46 3 0.01
47 2 0.01
48 1 0.00
49 334 0.88
ACGTcount: A:0.30, C:0.34, G:0.09, T:0.28
Consensus pattern (49 bp):
GCCATTAGGCCTCATCACATATACATACACTTTCACATTCACCACATCG
Found at i:50690197 original size:39 final size:39
Alignment explanation
Indices: 50690138--50690218 Score: 153
Period size: 39 Copynumber: 2.1 Consensus size: 39
50690128 ACATATACAT
50690138 ACACTTTCACATTCACCACATCGGCCATTAGGCCTCATC
1 ACACTTTCACATTCACCACATCGGCCATTAGGCCTCATC
*
50690177 ACACTTTCACATTCATCACATCGGCCATTAGGCCTCATC
1 ACACTTTCACATTCACCACATCGGCCATTAGGCCTCATC
50690216 ACA
1 ACA
50690219 TATACATACA
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
39 41 1.00
ACGTcount: A:0.27, C:0.37, G:0.10, T:0.26
Consensus pattern (39 bp):
ACACTTTCACATTCACCACATCGGCCATTAGGCCTCATC
Found at i:50700763 original size:29 final size:28
Alignment explanation
Indices: 50700729--50700831 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
50700719 TACTCAATCA
*
50700729 CGCACACTTAGTGCCATATGATTCAAGCC
1 CGCACACTTAGTGCCATAT-ATTCAAGCT
* * *
50700758 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCATATA-TTCAAGCT
* *
50700787 CGCACACTTAGTGCCGTACATTACAAGCT
1 CGCACACTTAGTGCCATATATT-CAAGCT
*
50700816 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
50700832 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
28 2 0.03
29 59 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (28 bp):
CGCACACTTAGTGCCATATATTCAAGCT
Found at i:50705759 original size:31 final size:31
Alignment explanation
Indices: 50705721--50705784 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
50705711 CCTTTTCATA
50705721 TTTCATATTTCATAATACTGGGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
*
50705752 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
50705783 TT
1 TT
50705785 ACTGTAAACG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.23, C:0.22, G:0.16, T:0.39
Consensus pattern (31 bp):
TTTCATATTTCATAATACTGGGCCGAAGCCT
Found at i:50706119 original size:24 final size:24
Alignment explanation
Indices: 50705975--50706119 Score: 204
Period size: 24 Copynumber: 6.0 Consensus size: 24
50705965 GCTTTATCAT
* *
50705975 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTG
* **
50706000 ATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTG
50706024 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTG
50706047 ATAACTGGGGCATAAGCCCTTTTTG
1 ATAACTGGGGCATAAGCCC-TTTTG
50706072 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
50706096 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
50706120 CACTTCCTCC
Statistics
Matches: 112, Mismatches: 5, Indels: 7
0.90 0.04 0.06
Matches are distributed among these distances:
23 19 0.17
24 62 0.55
25 31 0.28
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTG
Found at i:50706194 original size:20 final size:20
Alignment explanation
Indices: 50706169--50706228 Score: 102
Period size: 20 Copynumber: 3.0 Consensus size: 20
50706159 TATGATTACC
50706169 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
* *
50706189 TCATGTGCATAGCATACATT
1 TCATGTGCATATCATACATA
50706209 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
50706229 CCATATTTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.33, C:0.20, G:0.12, T:0.35
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:50706303 original size:25 final size:25
Alignment explanation
Indices: 50706271--50706318 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
50706261 ATACATAAAC
* * *
50706271 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
50706296 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
50706319 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:50708781 original size:93 final size:93
Alignment explanation
Indices: 50708669--50708840 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
50708659 GCCCATAAGT
* *
50708669 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
50708734 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
50708762 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
50708827 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
50708841 CAAATATCCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:50708836 original size:46 final size:46
Alignment explanation
Indices: 50708661--50708836 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
50708651 TGTAACCCGC
* * *
50708661 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
50708707 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
50708757 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
50708800 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
50708837 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:50715624 original size:37 final size:38
Alignment explanation
Indices: 50715543--50715635 Score: 152
Period size: 37 Copynumber: 2.4 Consensus size: 38
50715533 TCAATCATGC
*
50715543 ACTGGGCCGTAGCCCTTTTCATATTTCATATTTCATAAT
1 ACTGGGCCGAAG-CCTTTTCATATTTCATATTTCATAAT
*
50715582 ACTGGGCCGAAGCCTTTTCATATTTCATA-TTCATATT
1 ACTGGGCCGAAGCCTTTTCATATTTCATATTTCATAAT
50715619 ACTGGGCCGAAGCCTTT
1 ACTGGGCCGAAGCCTTT
50715636 ACTGTAAACG
Statistics
Matches: 52, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
37 24 0.46
38 17 0.33
39 11 0.21
ACGTcount: A:0.23, C:0.24, G:0.16, T:0.38
Consensus pattern (38 bp):
ACTGGGCCGAAGCCTTTTCATATTTCATATTTCATAAT
Found at i:50715966 original size:24 final size:24
Alignment explanation
Indices: 50715827--50715965 Score: 182
Period size: 23 Copynumber: 6.0 Consensus size: 24
50715817 GCTTTATCAT
* *
50715827 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTG
**
50715852 ATAACTGGGGCA-AAG-CCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTG
50715874 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTG
50715897 ATAACTGGGGCATAAG-CCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
50715920 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
50715944 ATAACT-GGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
50715966 TCACTTCCTC
Statistics
Matches: 106, Mismatches: 3, Indels: 12
0.88 0.02 0.10
Matches are distributed among these distances:
22 23 0.22
23 52 0.49
24 23 0.22
25 8 0.08
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTG
Found at i:50716040 original size:20 final size:20
Alignment explanation
Indices: 50716015--50716074 Score: 111
Period size: 20 Copynumber: 3.0 Consensus size: 20
50716005 TATGATTACC
50716015 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
*
50716035 TCATGTGCATATCATACATT
1 TCATGTGCATATCATACATA
50716055 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
50716075 CCATATTTAT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.33, C:0.20, G:0.10, T:0.37
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:50716045 original size:11 final size:11
Alignment explanation
Indices: 50716015--50716069 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
50716005 TATGATTACC
50716015 TCATGTGCATA
1 TCATGTGCATA
*
50716026 TCA--TACATA
1 TCATGTGCATA
50716035 TCATGTGCATA
1 TCATGTGCATA
* *
50716046 TCA--TACATT
1 TCATGTGCATA
50716055 TCATGTGCATA
1 TCATGTGCATA
50716066 TCAT
1 TCAT
50716070 ACATACCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.11, T:0.38
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:50716145 original size:25 final size:25
Alignment explanation
Indices: 50716115--50716162 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
50716105 ATACATAAAC
* * *
50716115 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
50716140 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
50716163 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:50716908 original size:16 final size:16
Alignment explanation
Indices: 50716879--50716911 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
50716869 TTCAGTTCCA
50716879 TAATTTACTCACTATT
1 TAATTTACTCACTATT
50716895 TAATTCTACT-ACTATT
1 TAATT-TACTCACTATT
50716911 T
1 T
50716912 TTAGTGATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 12 0.75
17 4 0.25
ACGTcount: A:0.30, C:0.18, G:0.00, T:0.52
Consensus pattern (16 bp):
TAATTTACTCACTATT
Found at i:50717715 original size:28 final size:28
Alignment explanation
Indices: 50717650--50717750 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
50717640 ATAGTGAATC
*
50717650 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
50717679 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
50717707 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
50717737 CGCACACTTAGTGC
1 CGCACACTTAGTGC
50717751 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:50725672 original size:28 final size:28
Alignment explanation
Indices: 50725607--50725707 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
50725597 ATAGTGAATC
*
50725607 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
50725636 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
50725664 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
50725694 CGCACACTTAGTGC
1 CGCACACTTAGTGC
50725708 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:50738151 original size:48 final size:49
Alignment explanation
Indices: 50738069--50738335 Score: 238
Period size: 48 Copynumber: 5.5 Consensus size: 49
50738059 GTACTAGGGT
* * * *
50738069 TATGTGAGCGAGTGTAAGACCATGTTTGGAACATGACATCGGA-ATTTA
1 TATGAGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGACATCTA
* * ** * *
50738117 TATGAGAGCTAGTGTAAGACCATGTATGGGACATGGCATTAG-CCTCGA
1 TATGAGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGACATCTA
* * * * * * *
50738165 CATGTGAACTAGTGTAAGACCATGTTTCGAACATGGAAT-TGACATTTA
1 TATGAGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGACATCTA
* * * * * *
50738213 TATGAGGGCTAGTGTAGGACCATGTCTGGGACATGGCATC-GACCTCGA
1 TATGAGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGACATCTA
* * *
50738261 CATGTGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCACCA-ATA
1 TATGAGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGG-A-CATCTA
*
50738311 TATGAGAGCCAGTGTAAGACCATGT
1 TATGAGAGCTAGTGTAAGACCATGT
50738336 CTAGGACATG
Statistics
Matches: 168, Mismatches: 45, Indels: 10
0.75 0.20 0.04
Matches are distributed among these distances:
47 1 0.01
48 141 0.84
49 1 0.01
50 24 0.14
51 1 0.01
ACGTcount: A:0.30, C:0.17, G:0.27, T:0.26
Consensus pattern (49 bp):
TATGAGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGACATCTA
Found at i:50738234 original size:96 final size:97
Alignment explanation
Indices: 50738070--50738347 Score: 361
Period size: 96 Copynumber: 2.9 Consensus size: 97
50738060 TACTAGGGTT
*
50738070 ATGTGAGCGAGTGTAAGACCATGTTTGGAACAT-GACATCGGAATTTATATGAGAGCTAGTGTAA
1 ATGTGAGCTAGTGTAAGACCATGTTTGGAACATGGACATCGGAATTTATATGAGAGCTAGTGTAA
50738134 GACCATGTATGGGACATGGCATTAG-CCTCGAC
66 GACCATGTATGGGACATGGCA-TAGACCTCGAC
* * * *
50738166 ATGTGAACTAGTGTAAGACCATGTTTCGAACATGGA-AT-TGACATTTATATGAGGGCTAGTGTA
1 ATGTGAGCTAGTGTAAGACCATGTTTGGAACATGGACATCGGA-ATTTATATGAGAGCTAGTGTA
* * *
50738229 GGACCATGTCTGGGACATGGCATCGACCTCGAC
65 AGACCATGTATGGGACATGGCATAGACCTCGAC
* *
50738262 ATGTGAGCTAGTGTAAGACCATGTTTGGAACATGG-CATCGGCACCA-ATATATGAGAGCCAGTG
1 ATGTGAGCTAGTGTAAGACCATGTTTGGAACATGGACATCGG-A--ATTTATATGAGAGCTAGTG
* *
50738325 TAAGACCATGTCTAGGACATGGC
63 TAAGACCATGTATGGGACATGGC
50738348 TTTAGCATCT
Statistics
Matches: 159, Mismatches: 16, Indels: 12
0.85 0.09 0.06
Matches are distributed among these distances:
95 4 0.03
96 114 0.72
97 3 0.02
98 36 0.23
99 2 0.01
ACGTcount: A:0.29, C:0.17, G:0.28, T:0.26
Consensus pattern (97 bp):
ATGTGAGCTAGTGTAAGACCATGTTTGGAACATGGACATCGGAATTTATATGAGAGCTAGTGTAA
GACCATGTATGGGACATGGCATAGACCTCGAC
Found at i:50739432 original size:28 final size:28
Alignment explanation
Indices: 50739392--50739446 Score: 76
Period size: 28 Copynumber: 1.9 Consensus size: 28
50739382 CACGGGCTAA
50739392 GACACAGGCGTGT-CATGGCCGTGTGAGG
1 GACACAGGCGTGTACA-GGCCGTGTGAGG
*
50739420 GACACGGGCGTGTACCAGGCCGTGTGA
1 GACACAGGCGTGTA-CAGGCCGTGTGA
50739447 AAACCCTTGT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
28 12 0.50
29 10 0.42
30 2 0.08
ACGTcount: A:0.18, C:0.24, G:0.42, T:0.16
Consensus pattern (28 bp):
GACACAGGCGTGTACAGGCCGTGTGAGG
Found at i:50744060 original size:46 final size:46
Alignment explanation
Indices: 50744010--50744186 Score: 203
Period size: 46 Copynumber: 3.8 Consensus size: 46
50744000 ATGGTTGAGC
* *
50744010 ATCCGAACTCGCTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAT
1 ATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAT
*** * * * **
50744056 ATCCGAGCTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTA-ACTAGGC
1 ATCCGAGCTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGATGCGA-AT
50744103 ATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAT
1 ATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAT
** * *
50744149 GCCCGAGCACGTTGAGTTGAGTTCGAGTTCACTTATGG
1 ATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
50744187 GCGGGTTACA
Statistics
Matches: 106, Mismatches: 22, Indels: 6
0.79 0.16 0.04
Matches are distributed among these distances:
46 69 0.65
47 37 0.35
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.28
Consensus pattern (46 bp):
ATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAT
Found at i:50744167 original size:93 final size:93
Alignment explanation
Indices: 50744008--50744178 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
50743998 GGATGGTTGA
* *
50744008 GCATCCGAACTCGCTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATATCCGAGCTCGTTGAGT
1 GCATCCGAACTCGCTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATACCCGAGCACGTTGAGT
50744073 TGAGTCCGAGTTCGAGAGATGTAACTAG
66 TGAGTCCGAGTTCGAGAGATGTAACTAG
* * *
50744101 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAGCACGTTGAGT
1 GCATCCGAACTCGCTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATACCCGAGCACGTTGAGT
*
50744166 TGAGTTCGAGTTC
66 TGAGTCCGAGTTC
50744179 ACTTATGGGC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.22, C:0.21, G:0.30, T:0.27
Consensus pattern (93 bp):
GCATCCGAACTCGCTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATACCCGAGCACGTTGAGT
TGAGTCCGAGTTCGAGAGATGTAACTAG
Found at i:50752804 original size:17 final size:19
Alignment explanation
Indices: 50752767--50752805 Score: 55
Period size: 20 Copynumber: 2.1 Consensus size: 19
50752757 AATTCAACTA
50752767 AAAGAAGAATATATGTCTTC
1 AAAGAAGAATATATG-CTTC
50752787 AAAGAAGAA-ATATG-TTC
1 AAAGAAGAATATATGCTTC
50752804 AA
1 AA
50752806 TGCTACGAAG
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 5 0.26
19 5 0.26
20 9 0.47
ACGTcount: A:0.51, C:0.08, G:0.15, T:0.26
Consensus pattern (19 bp):
AAAGAAGAATATATGCTTC
Found at i:50754302 original size:2 final size:2
Alignment explanation
Indices: 50754295--50754328 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
50754285 AACTTTTCTA
50754295 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
50754329 CATTTCCCTT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:50759820 original size:24 final size:24
Alignment explanation
Indices: 50759783--50759859 Score: 75
Period size: 24 Copynumber: 3.2 Consensus size: 24
50759773 ATGGTTGTTC
* *
50759783 AACCTTTCATCTTTCATCTCCTTT
1 AACCTTTAACCTTTCATCTCCTTT
* * *
50759807 GACCTTCT-ACCTTTTATCTTCTTT
1 AACCTT-TAACCTTTCATCTCCTTT
*
50759831 AACCTTTAACCTTTCATCTACTTGT
1 AACCTTTAACCTTTCATCTCCTT-T
50759856 AACC
1 AACC
50759860 CCTTTTTTCT
Statistics
Matches: 43, Mismatches: 7, Indels: 5
0.78 0.13 0.09
Matches are distributed among these distances:
23 1 0.02
24 36 0.84
25 6 0.14
ACGTcount: A:0.19, C:0.31, G:0.03, T:0.47
Consensus pattern (24 bp):
AACCTTTAACCTTTCATCTCCTTT
Found at i:50762143 original size:16 final size:16
Alignment explanation
Indices: 50762122--50762159 Score: 51
Period size: 15 Copynumber: 2.4 Consensus size: 16
50762112 TAAAAATAAT
50762122 ACATAAGACTACAAAA
1 ACATAAGACTACAAAA
* *
50762138 ACATAA-ACTTCTAAA
1 ACATAAGACTACAAAA
50762153 ACATAAG
1 ACATAAG
50762160 CTGTTTGAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
15 13 0.68
16 6 0.32
ACGTcount: A:0.58, C:0.18, G:0.05, T:0.18
Consensus pattern (16 bp):
ACATAAGACTACAAAA
Found at i:50765034 original size:8 final size:8
Alignment explanation
Indices: 50765017--50765072 Score: 66
Period size: 7 Copynumber: 7.2 Consensus size: 8
50765007 ATATTAAATA
50765017 TTTAAGTTT
1 TTTAA-TTT
50765026 TTT-ATTT
1 TTTAATTT
50765033 TTTAA--T
1 TTTAATTT
50765039 TTTAATTT
1 TTTAATTT
50765047 TTTAATTTT
1 TTTAA-TTT
50765056 TTTAA-TT
1 TTTAATTT
50765063 TTTAATTT
1 TTTAATTT
50765071 TT
1 TT
50765073 GAGTTTATTT
Statistics
Matches: 42, Mismatches: 0, Indels: 11
0.79 0.00 0.21
Matches are distributed among these distances:
6 6 0.14
7 13 0.31
8 12 0.29
9 11 0.26
ACGTcount: A:0.23, C:0.00, G:0.02, T:0.75
Consensus pattern (8 bp):
TTTAATTT
Found at i:50767119 original size:40 final size:40
Alignment explanation
Indices: 50767036--50767255 Score: 234
Period size: 40 Copynumber: 5.5 Consensus size: 40
50767026 ACCCAAGTAT
** * *
50767036 CTTCGGGAT-TTAG-CCGGATATAACCACTCGCAC-AAGGC
1 CTTCGGG-TCTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
50767074 CTTCGGGTCTTAGCCCGGATATGGTCACTAGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
* * * *
50767114 CTTCGGGACTTAGCCTGGATATAATCGCTAGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
50767154 CTTCGGGTCTTAGCCCGGATATAG-CAACTCA-CACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTC-ACT-AGCACAAATGC
* * * *
50767194 CTTCGGATCTTAGTCCGGATATAGTCACTAGCATAAAAGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
50767234 CTTCGGGACTTAGCTCGGATAT
1 CTTCGGGTCTTAGCCCGGATAT
50767256 CATTCGAATA
Statistics
Matches: 151, Mismatches: 24, Indels: 12
0.81 0.13 0.06
Matches are distributed among these distances:
37 1 0.01
38 11 0.07
39 17 0.11
40 120 0.79
41 2 0.01
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:50767167 original size:80 final size:79
Alignment explanation
Indices: 50767036--50767255 Score: 259
Period size: 80 Copynumber: 2.8 Consensus size: 79
50767026 ACCCAAGTAT
* * * * *
50767036 CTTCGGGATTTAGCCGGATATAACCACTCGCAC-AAGGCCTTCGGGTCTTAGCCCGGATATGGTC
1 CTTCGGGACTTAGCCGGATATAATCACTAGCACAAAAGCCTTCGGGTCTTAGCCCGGATATAG-C
*
50767100 -ACT-AGCATAAATGC
65 AACTCA-CACAAATGC
* *
50767114 CTTCGGGACTTAGCCTGGATATAATCGCTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGC
1 CTTCGGGACTTAGCC-GGATATAATCACTAGCACAAAAGCCTTCGGGTCTTAGCCCGGATATAGC
50767179 AACTCACACAAATGC
65 AACTCACACAAATGC
* * * *
50767194 CTTC-GGATCTTAGTCCGGATATAGTCACTAGCATAAAAGCCTTCGGGACTTAGCTCGGATAT
1 CTTCGGGA-CTTAG-CCGGATATAATCACTAGCACAAAAGCCTTCGGGTCTTAGCCCGGATAT
50767256 CATTCGAATA
Statistics
Matches: 123, Mismatches: 13, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
78 14 0.11
79 19 0.15
80 87 0.71
81 3 0.02
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (79 bp):
CTTCGGGACTTAGCCGGATATAATCACTAGCACAAAAGCCTTCGGGTCTTAGCCCGGATATAGCA
ACTCACACAAATGC
Found at i:50769241 original size:46 final size:48
Alignment explanation
Indices: 50769190--50769311 Score: 115
Period size: 53 Copynumber: 2.5 Consensus size: 48
50769180 TCCATGTGTT
* *
50769190 GTTTTTTAGGGTTTAGGGTTTTA-AA-AGTTATAGTTTAGTGTTTAGG
1 GTTTTTTAGGGTTTAGGGTTTTATAAGAGTTATAGATTAGTGTTCAGG
* * *
50769236 G-TTTTTAAGGTTTAGGGGTTTATTATTTTAAGGGTTATAGATTAGTGTTCATG
1 GTTTTTTAGGGTTTA-GGG-TT-TTA---TAAGAGTTATAGATTAGTGTTCAGG
*
50769289 ATTTTTTAGGGTTTAGGGTTTTA
1 GTTTTTTAGGGTTTAGGGTTTTA
50769312 GGGGTAATAT
Statistics
Matches: 60, Mismatches: 7, Indels: 13
0.75 0.09 0.16
Matches are distributed among these distances:
45 12 0.20
46 4 0.07
47 2 0.03
48 3 0.05
51 3 0.05
52 4 0.07
53 20 0.33
54 12 0.20
ACGTcount: A:0.21, C:0.01, G:0.27, T:0.51
Consensus pattern (48 bp):
GTTTTTTAGGGTTTAGGGTTTTATAAGAGTTATAGATTAGTGTTCAGG
Found at i:50769370 original size:41 final size:41
Alignment explanation
Indices: 50769321--50769545 Score: 297
Period size: 41 Copynumber: 5.5 Consensus size: 41
50769311 AGGGGTAATA
*
50769321 TGACTTTTAGCGGCGTTTTACCAAAAGCGCTGCTAATGCTC
1 TGACTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTC
** ** * * *
50769362 TGGTTTTTAGCGATGTTTTACCGAAAGCACCGCTAATTCTC
1 TGACTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTC
* * * * *
50769403 TGATTTTTAGCGGCATTTTACTAAAAGCGCCGTTAATACTC
1 TGACTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTC
* *
50769444 TGACTTTTAGCGGCATTTTACCAAAAGCGCCGCTATTGCTC
1 TGACTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTC
* *
50769485 TGACTTTTAGCGGTGTTTTACCAAAAGCGCCGCTATTGCTC
1 TGACTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTC
50769526 TGACTTTTAGCGGCGTTTTA
1 TGACTTTTAGCGGCGTTTTA
50769546 ACGAAAAATG
Statistics
Matches: 159, Mismatches: 25, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
41 159 1.00
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.35
Consensus pattern (41 bp):
TGACTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTC
Found at i:50769463 original size:123 final size:123
Alignment explanation
Indices: 50769321--50769545 Score: 344
Period size: 123 Copynumber: 1.8 Consensus size: 123
50769311 AGGGGTAATA
* * ** *
50769321 TGACTTTTAGCGGCGTTTTACCAAAAGCGCTGCTAATGCTCTGGTTTTTAGCGATGTTTTACCGA
1 TGACTTTTAGCGGCATTTTACCAAAAGCGCCGCTAATGCTCTGACTTTTAGCGATGTTTTACCAA
*
50769386 AAGCACCGCTAATT-CTCTGATTTTTAGCGGCATTTTACTAAAAGCGCCGTTAATACTC
66 AAGCACCGCT-ATTGCTCTGACTTTTAGCGGCATTTTACTAAAAGCGCCGTTAATACTC
* *
50769444 TGACTTTTAGCGGCATTTTACCAAAAGCGCCGCTATTGCTCTGACTTTTAGCGGTGTTTTACCAA
1 TGACTTTTAGCGGCATTTTACCAAAAGCGCCGCTAATGCTCTGACTTTTAGCGATGTTTTACCAA
* *
50769509 AAGCGCCGCTATTGCTCTGACTTTTAGCGGCGTTTTA
66 AAGCACCGCTATTGCTCTGACTTTTAGCGGCATTTTA
50769546 ACGAAAAATG
Statistics
Matches: 91, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
122 3 0.03
123 88 0.97
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.35
Consensus pattern (123 bp):
TGACTTTTAGCGGCATTTTACCAAAAGCGCCGCTAATGCTCTGACTTTTAGCGATGTTTTACCAA
AAGCACCGCTATTGCTCTGACTTTTAGCGGCATTTTACTAAAAGCGCCGTTAATACTC
Found at i:50769585 original size:123 final size:123
Alignment explanation
Indices: 50769336--50769585 Score: 265
Period size: 123 Copynumber: 2.0 Consensus size: 123
50769326 TTTAGCGGCG
* ** *
50769336 TTTTACCAAAAGCGCTGCTAATGCTCTGGTTTTTAGCGATGTTTTACCGAAAGCACCGCTAATTC
1 TTTTACCAAAAGCGCCGCTAATGCTCTGACTTTTAGCGATGTTTTACCAAAAGCACCGCTAATTC
* * * * * * ** * *
50769401 TCTGATTTTTAGCGGCATTTTACTAAAAGCGCCGTTAATACTCTGACTTTTAGCGGCA
66 TCTGACTTTTAGCGGCATTTTACGAAAAACGCCGTAAAAACACTGACTTAAAACGCCA
* * *
50769459 TTTTACCAAAAGCGCCGCTATTGCTCTGACTTTTAGCGGTGTTTTACCAAAAGCGCCGCT-ATTG
1 TTTTACCAAAAGCGCCGCTAATGCTCTGACTTTTAGCGATGTTTTACCAAAAGCACCGCTAATT-
* *
50769523 CTCTGACTTTTAGCGGCGTTTTAACGAAAAATGCCGCTAAAAACACTG-C-TAAAAC-CCTA
65 CTCTGACTTTTAGCGGCATTTT-ACGAAAAACGCCG-TAAAAACACTGACTTAAAACGCC-A
50769582 TTTT
1 TTTT
50769586 CCTGTAATGC
Statistics
Matches: 104, Mismatches: 19, Indels: 8
0.79 0.15 0.06
Matches are distributed among these distances:
122 4 0.04
123 81 0.78
124 11 0.11
125 8 0.08
ACGTcount: A:0.26, C:0.23, G:0.18, T:0.33
Consensus pattern (123 bp):
TTTTACCAAAAGCGCCGCTAATGCTCTGACTTTTAGCGATGTTTTACCAAAAGCACCGCTAATTC
TCTGACTTTTAGCGGCATTTTACGAAAAACGCCGTAAAAACACTGACTTAAAACGCCA
Found at i:50772537 original size:47 final size:48
Alignment explanation
Indices: 50772449--50772590 Score: 180
Period size: 48 Copynumber: 3.0 Consensus size: 48
50772439 ACTCGGGAGC
* *
50772449 CTCGCACCCTAAGTGCCAATATCATGGCCCGAAGCCAAATCAAT-AAA
1 CTCGCACCCGAAGTACCAATATCATGGCCCGAAGCCAAATCAATGAAA
* * * *
50772496 GCTCGCACCTGAAGTATCGATATCAT-GCCCGAAGCCAAATCAATGTAA
1 -CTCGCACCCGAAGTACCAATATCATGGCCCGAAGCCAAATCAATGAAA
* * *
50772544 CTCGTACCCGAAGTGCCAATATCATGGCCCAAAGCCAAATCAATGAA
1 CTCGCACCCGAAGTACCAATATCATGGCCCGAAGCCAAATCAATGAA
50772591 TTCTTTAATG
Statistics
Matches: 79, Mismatches: 13, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
47 38 0.48
48 41 0.52
ACGTcount: A:0.35, C:0.30, G:0.17, T:0.18
Consensus pattern (48 bp):
CTCGCACCCGAAGTACCAATATCATGGCCCGAAGCCAAATCAATGAAA
Found at i:50774892 original size:46 final size:46
Alignment explanation
Indices: 50774837--50775017 Score: 233
Period size: 46 Copynumber: 3.9 Consensus size: 46
50774827 TAGGATGGTT
50774837 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
* * *
50774883 GAGCGTCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAAC
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---C
*
50774929 TAGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
1 GA-GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
* ** *
50774976 GAACGCCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
50775018 GCGGGTTACA
Statistics
Matches: 116, Mismatches: 12, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.03
45 2 0.02
46 71 0.61
47 33 0.28
48 2 0.02
50 4 0.03
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
Found at i:50774998 original size:93 final size:93
Alignment explanation
Indices: 50774839--50775009 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
50774829 GGATGGTTGA
* *
50774839 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
50774904 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
50774932 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
50774997 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
50775010 ACTTATGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:50779717 original size:15 final size:15
Alignment explanation
Indices: 50779697--50779725 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
50779687 GTATGGTATC
50779697 GTATCTTGGATTTCT
1 GTATCTTGGATTTCT
50779712 GTATCTTGGATTTC
1 GTATCTTGGATTTC
50779726 CTCTCATTCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.14, C:0.14, G:0.21, T:0.52
Consensus pattern (15 bp):
GTATCTTGGATTTCT
Found at i:50783124 original size:19 final size:19
Alignment explanation
Indices: 50783093--50783138 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 19
50783083 GCGTTAAACC
*
50783093 TTCTTTCTCCCTTTCTTCTT
1 TTCTTT-TCCTTTTCTTCTT
*
50783113 TCTCTTTTCCTTTTTTTCTT
1 T-TCTTTTCCTTTTCTTCTT
50783133 TTCTTT
1 TTCTTT
50783139 CTGTTTCATA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
19 5 0.22
20 13 0.57
21 5 0.22
ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72
Consensus pattern (19 bp):
TTCTTTTCCTTTTCTTCTT
Found at i:50784327 original size:25 final size:24
Alignment explanation
Indices: 50784282--50784363 Score: 94
Period size: 24 Copynumber: 3.4 Consensus size: 24
50784272 CTAGAGGCCT
*
50784282 AGCCTCTTTTAAT-AACTGGGGCAA
1 AGCCT-TTTTGATAAACTGGGGCAA
50784306 AGCTCTTTTTGATAAACTGGGGCAA
1 AGC-CTTTTTGATAAACTGGGGCAA
* * *
50784331 AGCCCTTTTGGTAAACTGGGGCAT
1 AGCCTTTTTGATAAACTGGGGCAA
*
50784355 AGCCCTTTT
1 AGCCTTTTT
50784364 AGCACTTCCT
Statistics
Matches: 52, Mismatches: 4, Indels: 4
0.87 0.07 0.07
Matches are distributed among these distances:
24 36 0.69
25 16 0.31
ACGTcount: A:0.24, C:0.21, G:0.23, T:0.32
Consensus pattern (24 bp):
AGCCTTTTTGATAAACTGGGGCAA
Found at i:50785321 original size:27 final size:27
Alignment explanation
Indices: 50785291--50785520 Score: 164
Period size: 27 Copynumber: 8.4 Consensus size: 27
50785281 GTAAATCTAC
*
50785291 AAACCAAGGGTATTTCAGTAATTTTGT
1 AAACCAAGGGTATTTTAGTAATTTTGT
*
50785318 AAACCAATGGTATTTCTA-TAATTTT-T
1 AAACCAAGGGTATTT-TAGTAATTTTGT
* *
50785344 AGAAGGTCAAGGGTATTTTTGTAATTTTGT
1 A-AA--CCAAGGGTATTTTAGTAATTTTGT
* * **
50785374 AAATC-AGGCGTATTTTGGTAATTTTAC
1 AAACCAAGG-GTATTTTAGTAATTTTGT
*** ***
50785401 AAATTGAGGGTA-TTTAGGTAATTTCAC
1 AAACCAAGGGTATTTTA-GTAATTTTGT
* **
50785428 AAACC-AGTGGTATTTTGGTAATTTTAC
1 AAACCAAG-GGTATTTTAGTAATTTTGT
* * *
50785455 AAACTAGGGGTATTTTGGTAATTTTGT
1 AAACCAAGGGTATTTTAGTAATTTTGT
50785482 AAACCAAGGGTATTTTAGTAATTTTGT
1 AAACCAAGGGTATTTTAGTAATTTTGT
* *
50785509 AAATCGAGGGTA
1 AAACCAAGGGTA
50785521 AAACGATAAT
Statistics
Matches: 167, Mismatches: 24, Indels: 24
0.78 0.11 0.11
Matches are distributed among these distances:
26 10 0.06
27 127 0.76
28 9 0.05
29 19 0.11
30 2 0.01
ACGTcount: A:0.31, C:0.08, G:0.20, T:0.40
Consensus pattern (27 bp):
AAACCAAGGGTATTTTAGTAATTTTGT
Found at i:50785530 original size:27 final size:27
Alignment explanation
Indices: 50785499--50785682 Score: 287
Period size: 27 Copynumber: 6.8 Consensus size: 27
50785489 GGGTATTTTA
* *
50785499 GTAATTTTGTAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
*
50785526 ATAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
*
50785553 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
* * *
50785580 ATAATTCTATAAATTGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAACG
50785607 GTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
50785634 GTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
* *
50785661 GTAATTTTGTAAATCGAGGGTA
1 GTAATTCTATAAATCGAGGGTA
50785683 CTTTGGTAAT
Statistics
Matches: 143, Mismatches: 14, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 143 1.00
ACGTcount: A:0.40, C:0.09, G:0.23, T:0.29
Consensus pattern (27 bp):
GTAATTCTATAAATCGAGGGTAAAACG
Found at i:50785690 original size:27 final size:27
Alignment explanation
Indices: 50785353--50785706 Score: 212
Period size: 27 Copynumber: 13.1 Consensus size: 27
50785343 TAGAAGGTCA
* * *
50785353 AGGGTATTTTTGTAATTTTGTAAATC-
1 AGGGTAATTTGGTAATTTTATAAATCG
* * *
50785379 AGGCGTATTTTGGTAATTTTACAAATTG
1 AGG-GTAATTTGGTAATTTTATAAATCG
* * *
50785407 AGGGT-ATTTAGGTAATTTCACAAA-CC
1 AGGGTAATTT-GGTAATTTTATAAATCG
* * *
50785433 AGTGGTATTTTGGTAATTTTACAAA-CT
1 AG-GGTAATTTGGTAATTTTATAAATCG
* * * *
50785460 AGGGGTATTTTGGTAATTTTGTAAACCA
1 A-GGGTAATTTGGTAATTTTATAAATCG
* * *
50785488 AGGGTATTTTAGTAATTTTGTAAATCG
1 AGGGTAATTTGGTAATTTTATAAATCG
*** * *
50785515 AGGGTAAAACGATAATTCTATAAATCG
1 AGGGTAATTTGGTAATTTTATAAATCG
*** * *
50785542 AGGGTAAAACGGTAATTCTGTAAATCG
1 AGGGTAATTTGGTAATTTTATAAATCG
*** * * *
50785569 AGGGTAAAACGATAATTCTATAAATTG
1 AGGGTAATTTGGTAATTTTATAAATCG
** *
50785596 AGGGTAAAATGGTAATTCTATAAATCG
1 AGGGTAATTTGGTAATTTTATAAATCG
*** *
50785623 AGGGTAAAACGGTAATTCTATAAATCG
1 AGGGTAATTTGGTAATTTTATAAATCG
*** *
50785650 AGGGTAAAACGGTAATTTTGTAAATCG
1 AGGGTAATTTGGTAATTTTATAAATCG
* *
50785677 AGGGTACTTTGGTAATTTTATAAATTG
1 AGGGTAATTTGGTAATTTTATAAATCG
50785704 AGG
1 AGG
50785707 ACATTTTAGT
Statistics
Matches: 279, Mismatches: 42, Indels: 13
0.84 0.13 0.04
Matches are distributed among these distances:
26 8 0.03
27 262 0.94
28 9 0.03
ACGTcount: A:0.35, C:0.08, G:0.22, T:0.35
Consensus pattern (27 bp):
AGGGTAATTTGGTAATTTTATAAATCG
Found at i:50785690 original size:81 final size:81
Alignment explanation
Indices: 50785499--50785706 Score: 308
Period size: 81 Copynumber: 2.6 Consensus size: 81
50785489 GGGTATTTTA
* * *
50785499 GTAATTTTGTAAATCGAGGGTAAAACGATAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTA
1 GTAATTTTGTAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTATA
50785564 AATCGAGGGTAAAACG
66 AATCGAGGGTAAAACG
* * * *
50785580 ATAATTCTATAAATTGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTATA
1 GTAATTTTGTAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTATA
50785645 AATCGAGGGTAAAACG
66 AATCGAGGGTAAAACG
*** * *
50785661 GTAATTTTGTAAATCGAGGGTACTTTGGTAATTTTATAAATTGAGG
1 GTAATTTTGTAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGG
50785707 ACATTTTAGT
Statistics
Matches: 111, Mismatches: 16, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
81 111 1.00
ACGTcount: A:0.38, C:0.08, G:0.23, T:0.31
Consensus pattern (81 bp):
GTAATTTTGTAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTATA
AATCGAGGGTAAAACG
Found at i:50785727 original size:27 final size:27
Alignment explanation
Indices: 50785661--50785727 Score: 71
Period size: 27 Copynumber: 2.5 Consensus size: 27
50785651 GGGTAAAACG
** *
50785661 GTAATTTTGTAAATCGAGGGTACTTTG
1 GTAATTTTGTAAATCGAGGACACTTTA
* * *
50785688 GTAATTTTATAAATTGAGGACATTTTA
1 GTAATTTTGTAAATCGAGGACACTTTA
*
50785715 GTAATTTGGTAAA
1 GTAATTTTGTAAA
50785728 CTAAAGTATT
Statistics
Matches: 32, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.33, C:0.04, G:0.21, T:0.42
Consensus pattern (27 bp):
GTAATTTTGTAAATCGAGGACACTTTA
Found at i:50788078 original size:30 final size:29
Alignment explanation
Indices: 50788023--50788103 Score: 128
Period size: 30 Copynumber: 2.8 Consensus size: 29
50788013 TCAGTCTCGA
*
50788023 CATAT-ACTGGGCGAAGCCTTTTCATAAAT
1 CATATCACTGGCCGAAGCC-TTTCATAAAT
50788052 CATATCACTAGGCCGAAGCCTTTCATAAAT
1 CATATCACT-GGCCGAAGCCTTTCATAAAT
50788082 CATATCACTGGCCGAAGCCTTT
1 CATATCACTGGCCGAAGCCTTT
50788104 ACTGTAAGTG
Statistics
Matches: 49, Mismatches: 1, Indels: 4
0.91 0.02 0.07
Matches are distributed among these distances:
29 18 0.37
30 22 0.45
31 9 0.18
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.28
Consensus pattern (29 bp):
CATATCACTGGCCGAAGCCTTTCATAAAT
Found at i:50788370 original size:25 final size:25
Alignment explanation
Indices: 50788341--50788401 Score: 77
Period size: 25 Copynumber: 2.4 Consensus size: 25
50788331 TTACTGGGGC
*
50788341 AAAGCCCTTTTTGATAAACTAGGGA
1 AAAGCCCTTTTCGATAAACTAGGGA
* * *
50788366 AAAGCCCTTTTCGGTAAACTGGGGC
1 AAAGCCCTTTTCGATAAACTAGGGA
*
50788391 ATAGCCCTTTT
1 AAAGCCCTTTT
50788402 AGCACTTCCT
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 31 1.00
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (25 bp):
AAAGCCCTTTTCGATAAACTAGGGA
Found at i:50789226 original size:26 final size:27
Alignment explanation
Indices: 50789193--50789253 Score: 65
Period size: 27 Copynumber: 2.3 Consensus size: 27
50789183 TCATACGGAA
*
50789193 CATA-AGGGCCTATT-C-GTCATTTTAC
1 CATACAGGG-CTATTACGGTCACTTTAC
*
50789218 CATACAGGGGTATTACGGTCACTTTAC
1 CATACAGGGCTATTACGGTCACTTTAC
*
50789245 CCTACAGGG
1 CATACAGGG
50789254 GCTTTACAGT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
25 8 0.27
26 5 0.17
27 17 0.57
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.30
Consensus pattern (27 bp):
CATACAGGGCTATTACGGTCACTTTAC
Found at i:50789270 original size:27 final size:27
Alignment explanation
Indices: 50789208--50789285 Score: 79
Period size: 27 Copynumber: 2.9 Consensus size: 27
50789198 GGGCCTATTC
*
50789208 GTCATTTTACCATACAGGGGTATTACG
1 GTCATTTTACCATACAGGGGTATTACA
* *
50789235 GTCACTTTACCCTACAGGGGCT-TTACA
1 GTCATTTTACCATACAGGGG-TATTACA
* *
50789262 GTCTTTTTACC-TATTAGGGGTATT
1 GTCATTTTACCATA-CAGGGGTATT
50789286 TTTAGTCATT
Statistics
Matches: 42, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
26 3 0.07
27 38 0.90
28 1 0.02
ACGTcount: A:0.22, C:0.21, G:0.21, T:0.37
Consensus pattern (27 bp):
GTCATTTTACCATACAGGGGTATTACA
Found at i:50789357 original size:27 final size:27
Alignment explanation
Indices: 50789327--50789556 Score: 126
Period size: 27 Copynumber: 8.4 Consensus size: 27
50789317 GTAAATCTAC
50789327 AAACCAAGGGTATTTCAGTAATTTTGT
1 AAACCAAGGGTATTTCAGTAATTTTGT
*
50789354 AAACCAATGGTATTTCTA-TAATTTT-T
1 AAACCAAGGGTATTTC-AGTAATTTTGT
* *
50789380 AAAAAGTCAAGGGTATTTCTGTAATTTTGT
1 --AAA-CCAAGGGTATTTCAGTAATTTTGT
** * ** **
50789410 AAATTAGGGGTATTTTGGTAATTTTAC
1 AAACCAAGGGTATTTCAGTAATTTTGT
*** ***
50789437 AAATTGAGGGTATTTC-GATAATTTCAC
1 AAACCAAGGGTATTTCAG-TAATTTTGT
* ** **
50789464 AAA-CTAGTGGTATTTTGGTAATTTTAC
1 AAACCAAG-GGTATTTCAGTAATTTTGT
* * **
50789491 AAACTAGGGGTATTTTGGTAATTTTGT
1 AAACCAAGGGTATTTCAGTAATTTTGT
*
50789518 AAACCAAGGGTATTTTAGTAATTTTGT
1 AAACCAAGGGTATTTCAGTAATTTTGT
* *
50789545 AAATCGAGGGTA
1 AAACCAAGGGTA
50789557 AAACGGTAAT
Statistics
Matches: 165, Mismatches: 28, Indels: 20
0.77 0.13 0.09
Matches are distributed among these distances:
26 4 0.02
27 133 0.81
28 9 0.05
29 18 0.11
30 1 0.01
ACGTcount: A:0.32, C:0.08, G:0.20, T:0.40
Consensus pattern (27 bp):
AAACCAAGGGTATTTCAGTAATTTTGT
Found at i:50789528 original size:81 final size:82
Alignment explanation
Indices: 50789304--50789532 Score: 230
Period size: 83 Copynumber: 2.8 Consensus size: 82
50789294 TTTCATCCTA
* * * * * ** *
50789304 CAAGGGTGTTTTGGTAAATCTACAAACCAAGGGTATTTCAGTAATTTTGTAAACCAATGGTATTT
1 CAAGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTT
* *
50789369 CTATAATTTTTAAAAAG
66 CGATAATTTTCAAAAAG
** * ** ***
50789386 TCAAGGGTATTTCT-GTAATTTTGTAAATTAGGGGTATTTTGGTAATTTTACAAATTGAGGGTAT
1 -CAAGGGTATTT-TGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTGTAAACCAAGGGTAT
*
50789450 TTCGATAA-TTTCACAAA-
64 TTCGATAATTTTCAAAAAG
*
50789467 CTAGTGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTGTAAACCAAGGGTATT
1 CAAG-GGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTGTAAACCAAGGGTATT
50789532 T
65 T
50789533 TAGTAATTTT
Statistics
Matches: 115, Mismatches: 28, Indels: 8
0.76 0.19 0.05
Matches are distributed among these distances:
80 4 0.03
81 51 0.44
82 7 0.06
83 52 0.45
84 1 0.01
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.40
Consensus pattern (82 bp):
CAAGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTT
CGATAATTTTCAAAAAG
Found at i:50789530 original size:54 final size:54
Alignment explanation
Indices: 50789304--50789542 Score: 221
Period size: 54 Copynumber: 4.4 Consensus size: 54
50789294 TTTCATCCTA
* * * * *
50789304 CAAGGGTGTTTTGGTAAATCTACAAACCAAGGGTATTTCAGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTCGGTAATTTTGTAAAC
* * * * * *
50789358 CAATGGTATTTCT-ATAATTTTTAAAAAGTCAAGGGTATTTCTGTAATTTTGTAAAT
1 CAAGGGTATTT-TGGTAA-TTTTACAAACT-AAGGGTATTTCGGTAATTTTGTAAAC
* * * * * ***
50789414 TAGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGATAATTTCACAAA-
1 CAAGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTCGGTAATTTTGTAAAC
* * *
50789467 CTAGTGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTGTAAAC
1 CAAG-GGTATTTTGGTAATTTTACAAACTAAGGGTATTTCGGTAATTTTGTAAAC
*
50789522 CAAGGGTATTTTAGTAATTTT
1 CAAGGGTATTTTGGTAATTTT
50789543 GTAAATCGAG
Statistics
Matches: 144, Mismatches: 35, Indels: 12
0.75 0.18 0.06
Matches are distributed among these distances:
53 1 0.01
54 88 0.61
55 20 0.14
56 35 0.24
ACGTcount: A:0.31, C:0.08, G:0.19, T:0.41
Consensus pattern (54 bp):
CAAGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTCGGTAATTTTGTAAAC
Found at i:50789540 original size:81 final size:81
Alignment explanation
Indices: 50789304--50789541 Score: 214
Period size: 81 Copynumber: 2.9 Consensus size: 81
50789294 TTTCATCCTA
* * * * * ** *
50789304 CAAGGGTGTTTTGGTAAATCTACAAACCAAGGGTATTTCAGTAATTTTGTAAACCAATGGTATTT
1 CAAGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTT
*
50789369 CTA-TAATTTTTAAAAAG
66 -TAGTAA-TTTCAAAAAG
** * ** ***
50789386 TCAAGGGTATTTCT-GTAATTTTGTAAATTAGGGGTATTTTGGTAATTTTACAAATTGAGGGTA-
1 -CAAGGGTATTT-TGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTGTAAACCAAGGGTAT
* *
50789449 TTTCGATAATTTCACAAA-
64 TTTAG-TAATTTCAAAAAG
*
50789467 CTAGTGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTGTAAACCAAGGGTATT
1 CAAG-GGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTGTAAACCAAGGGTATT
50789532 TTAGTAATTT
65 TTAGTAATTT
50789542 TGTAAATCGA
Statistics
Matches: 120, Mismatches: 29, Indels: 14
0.74 0.18 0.09
Matches are distributed among these distances:
80 4 0.03
81 55 0.46
82 13 0.11
83 47 0.39
84 1 0.01
ACGTcount: A:0.32, C:0.08, G:0.19, T:0.41
Consensus pattern (81 bp):
CAAGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTT
TAGTAATTTCAAAAAG
Found at i:50789565 original size:27 final size:27
Alignment explanation
Indices: 50789535--50789691 Score: 197
Period size: 27 Copynumber: 5.8 Consensus size: 27
50789525 GGGTATTTTA
* *
50789535 GTAATTTTGTAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
* *
50789562 GTAATTCTATAAATCGAGGGAAAAACA
1 GTAATTCTATAAATCGAGGGTAAAACG
** *
50789589 GTAATTCTATAAATTAAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAACG
*
50789616 GTAATTCTATAAATCAAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
* * *
50789643 ATAATTCTGTAAATCGAGGATAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
* *
50789670 GTAATTTTGTAAATCGAGGGTA
1 GTAATTCTATAAATCGAGGGTA
50789692 CTTTGATAAT
Statistics
Matches: 112, Mismatches: 18, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 112 1.00
ACGTcount: A:0.42, C:0.08, G:0.21, T:0.29
Consensus pattern (27 bp):
GTAATTCTATAAATCGAGGGTAAAACG
Found at i:50789565 original size:54 final size:54
Alignment explanation
Indices: 50789507--50789691 Score: 160
Period size: 54 Copynumber: 3.4 Consensus size: 54
50789497 GGGGTATTTT
* * * * *
50789507 GGTAATTTTGTAAACCAAGGGTATTTTAG-TAATTTTGTAAATCGAGGGTAAAAC
1 GGTAATTCTATAAATCAAGGGTA-TATAGATAATTCTGTAAATCGAGGGTAAAAC
* * * * * ** *
50789561 GGTAATTCTATAAATCGAGGG-AAAAACAGTAATTCTATAAATTAAGGGTAAAAT
1 GGTAATTCTATAAATCAAGGGTATATAGA-TAATTCTGTAAATCGAGGGTAAAAC
* *
50789615 GGTAATTCTATAAATCAAGGGTA-AAACGATAATTCTGTAAATCGAGGATAAAAC
1 GGTAATTCTATAAATCAAGGGTATATA-GATAATTCTGTAAATCGAGGGTAAAAC
* * *
50789669 GGTAATTTTGTAAATCGAGGGTA
1 GGTAATTCTATAAATCAAGGGTA
50789692 CTTTGATAAT
Statistics
Matches: 104, Mismatches: 23, Indels: 8
0.77 0.17 0.06
Matches are distributed among these distances:
52 1 0.01
53 1 0.01
54 100 0.96
55 2 0.02
ACGTcount: A:0.41, C:0.08, G:0.21, T:0.30
Consensus pattern (54 bp):
GGTAATTCTATAAATCAAGGGTATATAGATAATTCTGTAAATCGAGGGTAAAAC
Found at i:50789593 original size:81 final size:80
Alignment explanation
Indices: 50789508--50789710 Score: 219
Period size: 81 Copynumber: 2.5 Consensus size: 80
50789498 GGGTATTTTG
* * * * *
50789508 GTAATTTTGTAAACCAAGGGTATTTTAGTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTATA
1 GTAATTTTGTAAATCAAGGGTAATTT-GTAATTTTATAAATCAAGGGTAAAACGATAATTCTATA
50789573 AATCGAGGGA-AAAACA
65 AATCGA-GGATAAAACA
* * * * * * *
50789589 GTAATTCTATAAATTAAGGGTAAAATGGTAATTCTATAAATCAAGGGTAAAACGATAATTCTGTA
1 GTAATTTTGTAAATCAAGGGT-AATTTGTAATTTTATAAATCAAGGGTAAAACGATAATTCTATA
*
50789654 AATCGAGGATAAAACG
65 AATCGAGGATAAAACA
* * *
50789670 GTAATTTTGTAAATCGAGGGTACTTTGATAATTTTACAAAT
1 GTAATTTTGTAAATCAAGGGTAATTTG-TAATTTTATAAAT
50789711 TGAGGACATT
Statistics
Matches: 97, Mismatches: 22, Indels: 6
0.78 0.18 0.05
Matches are distributed among these distances:
80 6 0.06
81 89 0.92
82 2 0.02
ACGTcount: A:0.40, C:0.08, G:0.19, T:0.32
Consensus pattern (80 bp):
GTAATTTTGTAAATCAAGGGTAATTTGTAATTTTATAAATCAAGGGTAAAACGATAATTCTATAA
ATCGAGGATAAAACA
Found at i:50792504 original size:24 final size:25
Alignment explanation
Indices: 50792477--50792531 Score: 78
Period size: 25 Copynumber: 2.2 Consensus size: 25
50792467 TTGGACAAGA
50792477 ATCCTGTTA-ATAGCCTTCT-TGAGC
1 ATCCTGTTATATAG-CTTCTATGAGC
*
50792501 ATCCTGTTATATAGTTTCTATGAGC
1 ATCCTGTTATATAGCTTCTATGAGC
50792526 ATCCTG
1 ATCCTG
50792532 ATCGGTAATG
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
24 13 0.46
25 15 0.54
ACGTcount: A:0.22, C:0.22, G:0.16, T:0.40
Consensus pattern (25 bp):
ATCCTGTTATATAGCTTCTATGAGC
Found at i:50798663 original size:29 final size:27
Alignment explanation
Indices: 50798629--50798731 Score: 89
Period size: 29 Copynumber: 3.6 Consensus size: 27
50798619 TACTCGATCA
*
50798629 CGCACACTTAGTGCCATGTGATTTAAGCC
1 CGCACACTTAGTGCCAT-T-ATTTAAGCT
* ** *
50798658 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCAT-TA-TTTAAGCT
*
50798687 CGCACACTTAGTGCCATACATTTCAAGCT
1 CGCACACTTAGTGCCAT-TATTT-AAGCT
*
50798716 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
50798732 ATCTCGTCAC
Statistics
Matches: 60, Mismatches: 12, Indels: 4
0.79 0.16 0.05
Matches are distributed among these distances:
28 2 0.03
29 58 0.97
ACGTcount: A:0.28, C:0.32, G:0.17, T:0.23
Consensus pattern (27 bp):
CGCACACTTAGTGCCATTATTTAAGCT
Found at i:50800071 original size:17 final size:19
Alignment explanation
Indices: 50800036--50800074 Score: 55
Period size: 20 Copynumber: 2.1 Consensus size: 19
50800026 TCCACACACA
50800036 TTTTTTTTTCATCATTTTCT
1 TTTTTTTTTCA-CATTTTCT
50800056 TTTTTTTTTC-CA-TTTCT
1 TTTTTTTTTCACATTTTCT
50800073 TT
1 TT
50800075 ATTCTCCCTT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 7 0.37
18 2 0.11
20 10 0.53
ACGTcount: A:0.08, C:0.15, G:0.00, T:0.77
Consensus pattern (19 bp):
TTTTTTTTTCACATTTTCT
Found at i:50806697 original size:29 final size:27
Alignment explanation
Indices: 50806663--50806765 Score: 89
Period size: 29 Copynumber: 3.6 Consensus size: 27
50806653 TACTCGATCA
*
50806663 CGCACACTTAGTGCCATGTGATTTAAGCC
1 CGCACACTTAGTGCCAT-T-ATTTAAGCT
* ** *
50806692 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCAT-TA-TTTAAGCT
*
50806721 CGCACACTTAGTGCCATACATTTCAAGCT
1 CGCACACTTAGTGCCAT-TATTT-AAGCT
*
50806750 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
50806766 ATCTCGTCAC
Statistics
Matches: 60, Mismatches: 12, Indels: 4
0.79 0.16 0.05
Matches are distributed among these distances:
28 2 0.03
29 58 0.97
ACGTcount: A:0.28, C:0.32, G:0.17, T:0.23
Consensus pattern (27 bp):
CGCACACTTAGTGCCATTATTTAAGCT
Found at i:50808109 original size:17 final size:19
Alignment explanation
Indices: 50808075--50808112 Score: 53
Period size: 20 Copynumber: 2.1 Consensus size: 19
50808065 TCCACACACA
50808075 TTTTTTTTCATCATTTTCTT
1 TTTTTTTTCA-CATTTTCTT
50808095 TTTTTTTTC-CA-TTTCTT
1 TTTTTTTTCACATTTTCTT
50808112 T
1 T
50808113 ATTCTCCCTA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 7 0.39
18 2 0.11
20 9 0.50
ACGTcount: A:0.08, C:0.16, G:0.00, T:0.76
Consensus pattern (19 bp):
TTTTTTTTCACATTTTCTT
Found at i:50812482 original size:43 final size:41
Alignment explanation
Indices: 50812417--50812561 Score: 107
Period size: 44 Copynumber: 3.4 Consensus size: 41
50812407 CCTACATCCT
* * *
50812417 AGACATGGTCTTACATGTAATCAAACATCGATGCCACTCTCCTC
1 AGACAGGGTCTTACACGAAATCAAA-ATCGATGCCA-TCT-CTC
* *
50812461 A-ACAGGGTCTTACACGAAATC-AGATACGATGCCGATGTCTC
1 AGACAGGGTCTTACACGAAATCAAAAT-CGATGCC-ATCTCTC
* * * *
50812502 AGACATGGTCTTACACGTAAAACAAAAGTCGATGCCAGCATCCC
1 AGACAGGGTCTTACACG-AAATCAAAA-TCGATGCCATC-TCTC
50812546 AGAC-GTGGTCTTACAC
1 AGACAG-GGTCTTACAC
50812562 AAAAACACAT
Statistics
Matches: 81, Mismatches: 12, Indels: 16
0.74 0.11 0.15
Matches are distributed among these distances:
41 6 0.07
42 24 0.30
43 23 0.28
44 27 0.33
45 1 0.01
ACGTcount: A:0.32, C:0.27, G:0.19, T:0.23
Consensus pattern (41 bp):
AGACAGGGTCTTACACGAAATCAAAATCGATGCCATCTCTC
Found at i:50812512 original size:42 final size:44
Alignment explanation
Indices: 50812413--50812561 Score: 125
Period size: 43 Copynumber: 3.5 Consensus size: 44
50812403 AATGCCTACA
* *
50812413 TCCT-AGACATGGTCTTACATGTAATCAAACATCGATGCCACTC
1 TCCTCAGACATGGTCTTACACGAAATCAAACATCGATGCCACTC
* * * *
50812456 TCCTCA-ACAGGGTCTTACACGAAATCAGATA-CGATGCCGA-TG
1 TCCTCAGACATGGTCTTACACGAAATCAAACATCGATGCC-ACTC
* *
50812498 T-CTCAGACATGGTCTTACACGTAAAACAAA-AGTCGATGCCAGC-A
1 TCCTCAGACATGGTCTTACACG-AAATCAAACA-TCGATGCCA-CTC
*
50812542 TCC-CAGACGTGGTCTTACAC
1 TCCTCAGACATGGTCTTACAC
50812562 AAAAACACAT
Statistics
Matches: 86, Mismatches: 11, Indels: 17
0.75 0.10 0.15
Matches are distributed among these distances:
41 4 0.05
42 24 0.28
43 32 0.37
44 25 0.29
45 1 0.01
ACGTcount: A:0.31, C:0.28, G:0.18, T:0.23
Consensus pattern (44 bp):
TCCTCAGACATGGTCTTACACGAAATCAAACATCGATGCCACTC
Found at i:50826292 original size:34 final size:33
Alignment explanation
Indices: 50826249--50826312 Score: 92
Period size: 34 Copynumber: 1.9 Consensus size: 33
50826239 CGTTACTGTA
* * *
50826249 ATGGGCTAAGGCCTACATTGATACTGTAACTGCT
1 ATGGCCTAAGGCCCACACTGATACTG-AACTGCT
50826283 ATGGCCTAAGGCCCACACTGATACTGAACT
1 ATGGCCTAAGGCCCACACTGATACTGAACT
50826313 ATCACTGAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
33 4 0.15
34 23 0.85
ACGTcount: A:0.28, C:0.25, G:0.22, T:0.25
Consensus pattern (33 bp):
ATGGCCTAAGGCCCACACTGATACTGAACTGCT
Found at i:50826761 original size:12 final size:12
Alignment explanation
Indices: 50826744--50826778 Score: 70
Period size: 12 Copynumber: 2.9 Consensus size: 12
50826734 AACAGGATAC
50826744 TTAAAAGTTTTA
1 TTAAAAGTTTTA
50826756 TTAAAAGTTTTA
1 TTAAAAGTTTTA
50826768 TTAAAAGTTTT
1 TTAAAAGTTTT
50826779 TAATAATGTC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.40, C:0.00, G:0.09, T:0.51
Consensus pattern (12 bp):
TTAAAAGTTTTA
Found at i:50828940 original size:22 final size:22
Alignment explanation
Indices: 50828915--50828984 Score: 72
Period size: 22 Copynumber: 3.2 Consensus size: 22
50828905 TTAAACCCTA
* *
50828915 AAACCATAATCTATAAAACAAT
1 AAACCCTAATCTATAAAACACT
* *
50828937 AAACCCCAAAC-ATAAAACACT
1 AAACCCTAATCTATAAAACACT
*
50828958 AAACCCTAAATCT-TAAAATACT
1 AAACCCT-AATCTATAAAACACT
50828980 AAACC
1 AAACC
50828985 TTAAACCCAA
Statistics
Matches: 39, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
21 15 0.38
22 24 0.62
ACGTcount: A:0.56, C:0.26, G:0.00, T:0.19
Consensus pattern (22 bp):
AAACCCTAATCTATAAAACACT
Found at i:50829012 original size:28 final size:29
Alignment explanation
Indices: 50828973--50829053 Score: 101
Period size: 29 Copynumber: 2.8 Consensus size: 29
50828963 CTAAATCTTA
50828973 AAATACTAAACCTTAAACCC-AAAACACT
1 AAATACTAAACCTTAAACCCTAAAACACT
* *
50829001 AAATACTAAACCATAAACCCTAAAACCCT
1 AAATACTAAACCTTAAACCCTAAAACACT
* * * *
50829030 AAATAATAGACATTAAACCTTAAA
1 AAATACTAAACCTTAAACCCTAAA
50829054 CCCTAAAATA
Statistics
Matches: 45, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
28 19 0.42
29 26 0.58
ACGTcount: A:0.54, C:0.25, G:0.01, T:0.20
Consensus pattern (29 bp):
AAATACTAAACCTTAAACCCTAAAACACT
Found at i:50829027 original size:36 final size:36
Alignment explanation
Indices: 50828979--50829061 Score: 87
Period size: 36 Copynumber: 2.3 Consensus size: 36
50828969 CTTAAAATAC
* * *
50828979 TAAA-CCTTAAACCCAAAACACTAAATACTAAACCA
1 TAAACCCTAAAACCCAAAACAATAAACACTAAACCA
* * * * *
50829014 TAAACCCTAAAACCCTAAATAATAGACATTAAACCT
1 TAAACCCTAAAACCCAAAACAATAAACACTAAACCA
50829050 TAAACCCTAAAA
1 TAAACCCTAAAA
50829062 TAAAAAACAC
Statistics
Matches: 39, Mismatches: 8, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
35 4 0.10
36 35 0.90
ACGTcount: A:0.53, C:0.27, G:0.01, T:0.19
Consensus pattern (36 bp):
TAAACCCTAAAACCCAAAACAATAAACACTAAACCA
Found at i:50829046 original size:29 final size:30
Alignment explanation
Indices: 50828973--50829069 Score: 96
Period size: 28 Copynumber: 3.4 Consensus size: 30
50828963 CTAAATCTTA
* *
50828973 AAATACTAAACC-TTAAACCC-AAAACACT
1 AAATAATAAACCATTAAACCCTAAAACCCT
*
50829001 AAATACTAAACCA-TAAACCCTAAAACCCT
1 AAATAATAAACCATTAAACCCTAAAACCCT
* *
50829030 AAATAATAGA-CATTAAA-CCTTAAACCCT
1 AAATAATAAACCATTAAACCCTAAAACCCT
*
50829058 AAAATAAAAAAC
1 -AAATAATAAAC
50829070 ACCACCAATA
Statistics
Matches: 58, Mismatches: 6, Indels: 8
0.81 0.08 0.11
Matches are distributed among these distances:
28 31 0.53
29 27 0.47
ACGTcount: A:0.56, C:0.25, G:0.01, T:0.19
Consensus pattern (30 bp):
AAATAATAAACCATTAAACCCTAAAACCCT
Found at i:50832169 original size:40 final size:38
Alignment explanation
Indices: 50832055--50832170 Score: 101
Period size: 40 Copynumber: 2.9 Consensus size: 38
50832045 TATTAAAAAT
* *
50832055 ATTTTTATAATTTATTTGAACTTATATATATTTTTTGTAA
1 ATTTTTATAATTTATAT-AACTTTTA-ATATTTTTTGTAA
* * *
50832095 ATTTTTATAATTCT-TATAAGTTTTTATGACTTTTTTTTATA
1 ATTTTTATAATT-TATATAACTTTTAAT-A-TTTTTTGTA-A
50832136 ATTTTTATAAGTTTATATCAA-TTTTAATATTTTTT
1 ATTTTTATAA-TTTATAT-AACTTTTAATATTTTTT
50832171 AATTTGAAAT
Statistics
Matches: 63, Mismatches: 6, Indels: 14
0.76 0.07 0.17
Matches are distributed among these distances:
38 2 0.03
39 6 0.10
40 28 0.44
41 14 0.22
42 11 0.17
43 2 0.03
ACGTcount: A:0.30, C:0.03, G:0.04, T:0.62
Consensus pattern (38 bp):
ATTTTTATAATTTATATAACTTTTAATATTTTTTGTAA
Found at i:50832449 original size:16 final size:16
Alignment explanation
Indices: 50832428--50832469 Score: 66
Period size: 16 Copynumber: 2.6 Consensus size: 16
50832418 TTTAGGACTA
50832428 CTATTTTTAGTGTTTG
1 CTATTTTTAGTGTTTG
*
50832444 CTATTTTTAATGTTTG
1 CTATTTTTAGTGTTTG
*
50832460 TTATTTTTAG
1 CTATTTTTAG
50832470 GAGTTTTGTT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.17, C:0.05, G:0.14, T:0.64
Consensus pattern (16 bp):
CTATTTTTAGTGTTTG
Found at i:50843328 original size:17 final size:17
Alignment explanation
Indices: 50843288--50843321 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
50843278 TGAGTACGAG
50843288 GGAGATGAGAGAATTCA
1 GGAGATGAGAGAATTCA
50843305 GGAGATGAGAGAATTCA
1 GGAGATGAGAGAATTCA
50843322 CGGGATGCAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.41, C:0.06, G:0.35, T:0.18
Consensus pattern (17 bp):
GGAGATGAGAGAATTCA
Found at i:50846144 original size:38 final size:38
Alignment explanation
Indices: 50846073--50846185 Score: 113
Period size: 38 Copynumber: 3.0 Consensus size: 38
50846063 TTTAATTATT
* *
50846073 AGTCTTTAATTATGTTATAACTTGGACAACATTAATATG
1 AGTCTTTAATTATGTCATAACTTGAACAACATTAATA-G
* *
50846112 AGT-TTTAATTATGTCATAA-TCTGAACATCATTATTAG
1 AGTCTTTAATTATGTCATAACT-TGAACAACATTAATAG
* * * * *
50846149 TGTCTTTAATTATGTCCTAGCTTGAACATCTTTAATA
1 AGTCTTTAATTATGTCATAACTTGAACAACATTAATA
50846186 CATGTTTTAA
Statistics
Matches: 62, Mismatches: 9, Indels: 7
0.79 0.12 0.09
Matches are distributed among these distances:
37 4 0.06
38 54 0.87
39 4 0.06
ACGTcount: A:0.33, C:0.12, G:0.12, T:0.43
Consensus pattern (38 bp):
AGTCTTTAATTATGTCATAACTTGAACAACATTAATAG
Found at i:50848444 original size:17 final size:16
Alignment explanation
Indices: 50848403--50848445 Score: 68
Period size: 16 Copynumber: 2.7 Consensus size: 16
50848393 GATGTAGGAC
*
50848403 TGCTATTTTTATTGTT
1 TGCTATTTTTAATGTT
50848419 TGCTATTTTTAATGTT
1 TGCTATTTTTAATGTT
*
50848435 TTCTATTTTTA
1 TGCTATTTTTA
50848446 GAAGTTTTGT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 25 1.00
ACGTcount: A:0.16, C:0.07, G:0.09, T:0.67
Consensus pattern (16 bp):
TGCTATTTTTAATGTT
Found at i:50848452 original size:17 final size:16
Alignment explanation
Indices: 50848405--50848453 Score: 53
Period size: 16 Copynumber: 3.0 Consensus size: 16
50848395 TGTAGGACTG
** *
50848405 CTATTTTTATTGTTTG
1 CTATTTTTAAAGTTTT
*
50848421 CTATTTTTAATGTTTT
1 CTATTTTTAAAGTTTT
50848437 CTATTTTTAGAAGTTTT
1 CTATTTTTA-AAGTTTT
50848454 GTTATTTGGA
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
16 23 0.79
17 6 0.21
ACGTcount: A:0.18, C:0.06, G:0.10, T:0.65
Consensus pattern (16 bp):
CTATTTTTAAAGTTTT
Done.