Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr03 135709677
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 135709677
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 167 of 438
Found at i:51192417 original size:57 final size:51
Alignment explanation
Indices: 51192329--51192456 Score: 168
Period size: 57 Copynumber: 2.4 Consensus size: 51
51192319 GCGGAAGTGC
*
51192329 AAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCATAACTTATGCCCTAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCGAAAAGGG-----CTT-TGCCCCAGTTTACCG
**
51192386 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTTGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTTTGCCCCAGTTTACCG
51192437 AAAAGGGCTT-TGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
51192457 ATTAAAGAGG
Statistics
Matches: 68, Mismatches: 3, Indels: 7
0.87 0.04 0.09
Matches are distributed among these distances:
50 10 0.15
51 24 0.35
52 3 0.04
57 31 0.46
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (51 bp):
AAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTTTGCCCCAGTTTACCG
Found at i:51192431 original size:25 final size:26
Alignment explanation
Indices: 51192329--51192456 Score: 170
Period size: 25 Copynumber: 4.8 Consensus size: 26
51192319 GCGGAAGTGC
51192329 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
*
51192355 AAAAGGGCATAACTTATGCCCTAGTTTACCG
1 AAAAGGG-----CTTATGCCCCAGTTTACCG
**
51192386 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCG
51192412 AAAAGGGCTT-TGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
51192437 AAAAGGGCTT-TGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
51192457 ATTAAAGAGG
Statistics
Matches: 91, Mismatches: 6, Indels: 11
0.84 0.06 0.10
Matches are distributed among these distances:
25 33 0.36
26 33 0.36
31 25 0.27
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTACCG
Found at i:51192660 original size:42 final size:42
Alignment explanation
Indices: 51192601--51192692 Score: 130
Period size: 42 Copynumber: 2.2 Consensus size: 42
51192591 TAGTCTCCCC
* ** * *
51192601 AAATGGGCTTGCATACATTCATTGGTATTTCATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACACTACATGTGATATTG
*
51192643 AAATGGGCTTGCTTACATCCATTGACACTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACACTACATGTGATATTG
51192685 AAATGGGC
1 AAATGGGC
51192693 CTAAGGGCCA
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 44 1.00
ACGTcount: A:0.28, C:0.15, G:0.22, T:0.35
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCCATTGACACTACATGTGATATTG
Found at i:51192751 original size:31 final size:31
Alignment explanation
Indices: 51192716--51192794 Score: 124
Period size: 32 Copynumber: 2.5 Consensus size: 31
51192706 CGTTTATAGT
51192716 AAAGGCTTCGGCCCA-ATGATATGATTTATGA
1 AAAGGCTTCGGCCCAGA-GATATGATTTATGA
51192747 AAAGGCTTCGGCCCTAGAGATATGATTTATGA
1 AAAGGCTTCGGCCC-AGAGATATGATTTATGA
*
51192779 AAAGGCTTTGGCCCAG
1 AAAGGCTTCGGCCCAG
51192795 TAACCGTTAA
Statistics
Matches: 45, Mismatches: 1, Indels: 4
0.90 0.02 0.08
Matches are distributed among these distances:
31 16 0.36
32 28 0.62
33 1 0.02
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.27
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGAGATATGATTTATGA
Found at i:51194731 original size:47 final size:50
Alignment explanation
Indices: 51194524--51194752 Score: 193
Period size: 46 Copynumber: 4.8 Consensus size: 50
51194514 ATGTAAGAGA
* * *
51194524 TGAGAGCTAGTGTAAGA-CACGTCTGGGACAT-GCATCGGCCTCGAGAT--G
1 TGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGG-CACG-GATACG
*
51194572 T-A-AGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGG--C---TACA
1 TGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACGGATACG
* **
51194613 TGATGTGTTAGTGTAAGACCATGTCTGGGACATGGCATCGGCACGGATACG
1 TGA-GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACGGATACG
* * **
51194664 TGAGAGTCAGTGTAAGACCATGTCTGGGACATGGCAT-TG-ACTTA-ACG
1 TGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACGGATACG
* * *
51194711 TGAGAGCCAGTGTAATACCATGTCTAGGACATTGCATCGGCA
1 TGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCA
51194753 TTATACCCTA
Statistics
Matches: 150, Mismatches: 17, Indels: 27
0.77 0.09 0.14
Matches are distributed among these distances:
39 1 0.01
41 1 0.01
42 1 0.01
43 1 0.01
44 10 0.07
45 14 0.09
46 39 0.26
47 37 0.25
48 6 0.04
49 2 0.01
50 32 0.21
51 6 0.04
ACGTcount: A:0.27, C:0.20, G:0.30, T:0.24
Consensus pattern (50 bp):
TGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACGGATACG
Found at i:51194734 original size:97 final size:89
Alignment explanation
Indices: 51194523--51194752 Score: 239
Period size: 97 Copynumber: 2.5 Consensus size: 89
51194513 GATGTAAGAG
* *
51194523 ATGAGAGCTAGTGTAAGA-CACGTCTGGGACATGCATCGGCCTCGAGATGTAAGCCAGTGTAAGA
1 ATGAGAGCTAGTGTAAGACCATGTCTGGGACATGCATCGG-CACGAGATGTAAGCCAGTGTAAGA
*
51194587 CATGTCTGGGACATGCATCGGCTAC
65 CATGTCTGGGACATGCATCGACTAC
* * *
51194612 ATGATGTGTTAGTGTAAGACCATGTCTGGGACATGGCATCGGCACG-GATACGTGAGAGTCAGTG
1 ATGA-GAGCTAGTGTAAGACCATGTCTGGGACAT-GCATCGGCACGAGAT--GT-A-AGCCAGTG
*
51194676 TAAGACCATGTCTGGGACATGGCATTGACTTAAC
60 TAAGA-CATGTCTGGGACAT-GCATCGAC-T-AC
* * * *
51194710 GTGAGAGCCAGTGTAATACCATGTCTAGGACATTGCATCGGCA
1 ATGAGAGCTAGTGTAAGACCATGTCTGGGACA-TGCATCGGCA
51194753 TTATACCCTA
Statistics
Matches: 116, Mismatches: 13, Indels: 16
0.80 0.09 0.11
Matches are distributed among these distances:
89 4 0.03
90 15 0.13
91 16 0.14
92 9 0.08
93 1 0.01
94 12 0.10
95 14 0.12
96 6 0.05
97 33 0.28
98 6 0.05
ACGTcount: A:0.27, C:0.20, G:0.30, T:0.23
Consensus pattern (89 bp):
ATGAGAGCTAGTGTAAGACCATGTCTGGGACATGCATCGGCACGAGATGTAAGCCAGTGTAAGAC
ATGTCTGGGACATGCATCGACTAC
Found at i:51198569 original size:40 final size:40
Alignment explanation
Indices: 51198514--51198721 Score: 267
Period size: 40 Copynumber: 5.2 Consensus size: 40
51198504 TGAATGATAC
* * *
51198514 CCGGGCTAAGCCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-TTATAT
*
51198554 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* *
51198594 CCGGGTTAAGACCCGAAGGCATTTGTACGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* * *
51198634 CCGGGCTAAGACCCAAAGGCATTTGTGCGAGTTGCTATAC
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* * ** *
51198674 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
51198714 CC-GGCTAA
1 CCGGGCTAA
51198722 ATTCCGAAGA
Statistics
Matches: 146, Mismatches: 21, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
39 5 0.03
40 139 0.95
41 2 0.01
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
Found at i:51198647 original size:80 final size:80
Alignment explanation
Indices: 51198510--51198721 Score: 311
Period size: 80 Copynumber: 2.7 Consensus size: 80
51198500 CAATTGAATG
* * * *
51198510 ATACCCGGGCTAAGCCCCGAAGGCATTTATGCTAG-TGATTATATCCGGGCTAAGACCCGAAGGC
1 ATACCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTTG-TTATATCCGGGCTAAGACCCAAAGGC
51198574 ATTTGTGCGAGTTGCT
65 ATTTGTGCGAGTTGCT
* * *
51198590 ATATCCGGGTTAAGACCCGAAGGCATTTGTACGAGTTGTTATATCCGGGCTAAGACCCAAAGGCA
1 ATACCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTTGTTATATCCGGGCTAAGACCCAAAGGCA
51198655 TTTGTGCGAGTTGCT
66 TTTGTGCGAGTTGCT
* * *
51198670 ATACCCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATATCC-GGCTAA
1 ATACCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTTGTTATATCCGGGCTAA
51198722 ATTCCGAAGA
Statistics
Matches: 118, Mismatches: 13, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
79 6 0.05
80 110 0.93
81 2 0.02
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (80 bp):
ATACCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTTGTTATATCCGGGCTAAGACCCAAAGGCA
TTTGTGCGAGTTGCT
Found at i:51210122 original size:27 final size:26
Alignment explanation
Indices: 51210070--51210129 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
51210060 ACATATATAT
*
51210070 ATATCTGTTCTGGTGGCCTAGCCACA
1 ATATCTGTTCTGGTGACCTAGCCACA
* * *
51210096 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGT-TCTGGTGACCTAGCCACA
51210123 ATATCTG
1 ATATCTG
51210130 GCAGCCTCGC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.35
Consensus pattern (26 bp):
ATATCTGTTCTGGTGACCTAGCCACA
Found at i:51213031 original size:30 final size:30
Alignment explanation
Indices: 51212997--51213057 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
51212987 TTCTCGAGCC
51212997 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
1 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
* * * *
51213027 TAGGGGCAAAATTGTAATTTTGCCAAAGTT
1 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
51213057 T
1 T
51213058 GAGTAAGGAC
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.38, C:0.08, G:0.25, T:0.30
Consensus pattern (30 bp):
TAGGGGCAAAAGTGTAAATATGCAAAAGTT
Found at i:51213842 original size:68 final size:68
Alignment explanation
Indices: 51213767--51213914 Score: 160
Period size: 64 Copynumber: 2.2 Consensus size: 68
51213757 CATCATGTGT
* * * *
51213767 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTA-TG-TGTACACCA
1 ACAAGAGAGCTACAAGACA-TAT-ATATAGCTAGGTCGCATGCGTGATACTAGTGAAGGACACCA
51213830 TGTAG
64 TGTAG
* * * **
51213835 ACAAGAGAGCT--ATGGCATATATATAGCTAGGTCGCATGCGTGGTTTTAGGTGAAGGACACCAT
1 ACAAGAGAGCTACAAGACATATATATAGCTAGGTCGCATGCGTGATACTA-GTGAAGGACACCAT
51213898 GTAG
65 GTAG
51213902 ACAAGAGAGCTAC
1 ACAAGAGAGCTAC
51213915 GAGATAAATT
Statistics
Matches: 66, Mismatches: 9, Indels: 9
0.79 0.11 0.11
Matches are distributed among these distances:
64 23 0.35
65 3 0.05
66 6 0.09
67 23 0.35
68 11 0.17
ACGTcount: A:0.32, C:0.16, G:0.28, T:0.24
Consensus pattern (68 bp):
ACAAGAGAGCTACAAGACATATATATAGCTAGGTCGCATGCGTGATACTAGTGAAGGACACCATG
TAG
Found at i:51220788 original size:40 final size:40
Alignment explanation
Indices: 51220722--51220888 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
51220712 AAATTGAATG
* * *
51220722 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
51220761 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
51220801 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
51220841 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
51220881 ATATCCGG
1 ATATCCGG
51220889 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:51228792 original size:40 final size:40
Alignment explanation
Indices: 51228726--51228892 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
51228716 AAATTGAATG
* * *
51228726 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
51228765 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
51228805 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
51228845 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
51228885 ATATCCGG
1 ATATCCGG
51228893 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:51231119 original size:26 final size:27
Alignment explanation
Indices: 51231090--51231149 Score: 77
Period size: 27 Copynumber: 2.3 Consensus size: 27
51231080 CCACAAATAT
*
51231090 ATATCTGT-TCTGGTGGCCTAGCCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
* * *
51231116 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
51231143 ATATCTG
1 ATATCTG
51231150 GTAGCCTCGC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.35
Consensus pattern (27 bp):
ATATCTGTATCTGGTGACCTAGCCACA
Found at i:51234998 original size:23 final size:22
Alignment explanation
Indices: 51234955--51235004 Score: 64
Period size: 22 Copynumber: 2.1 Consensus size: 22
51234945 ATTTTGTTCA
*
51234955 ATTTTAACTTTTATTCAAAAAT
1 ATTTTAAATTTTATTCAAAAAT
51234977 ATTTTAAATTGTTATTTCAAAAAAT
1 ATTTTAAATT-TTA-TTC-AAAAAT
51235002 ATT
1 ATT
51235005 ATCAAATAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
22 9 0.38
23 3 0.12
24 3 0.12
25 9 0.38
ACGTcount: A:0.42, C:0.06, G:0.02, T:0.50
Consensus pattern (22 bp):
ATTTTAAATTTTATTCAAAAAT
Found at i:51238169 original size:27 final size:27
Alignment explanation
Indices: 51238139--51238229 Score: 121
Period size: 27 Copynumber: 3.4 Consensus size: 27
51238129 ATTACCAAAG
* * * *
51238139 TACCCTCAATTTATAGAATTATCGTTT
1 TACCCTCAATTTACAAAATTACCATTT
*
51238166 TACCCTCGATTTACAAAATTACCATTT
1 TACCCTCAATTTACAAAATTACCATTT
*
51238193 TACCCTCAGTTTACAAAATTACCATTT
1 TACCCTCAATTTACAAAATTACCATTT
51238220 TACCCT-AATT
1 TACCCTCAATT
51238230 GTGAAATTAC
Statistics
Matches: 56, Mismatches: 8, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
26 3 0.05
27 53 0.95
ACGTcount: A:0.32, C:0.24, G:0.04, T:0.40
Consensus pattern (27 bp):
TACCCTCAATTTACAAAATTACCATTT
Found at i:51238184 original size:54 final size:54
Alignment explanation
Indices: 51238112--51238225 Score: 129
Period size: 54 Copynumber: 2.1 Consensus size: 54
51238102 ATTACTGAAA
** * * * *
51238112 TACCCTCGACTTGTAAAATTACCAAAGTACCCTCAATTTATAGAATTATCGTTT
1 TACCCTCGACTTACAAAATTACCAAAGTACCCTCAATTTACAAAATTACCATTT
* *** *
51238166 TACCCTCGATTTACAAAATTACCATTTTACCCTCAGTTTACAAAATTACCATTT
1 TACCCTCGACTTACAAAATTACCAAAGTACCCTCAATTTACAAAATTACCATTT
51238220 TACCCT
1 TACCCT
51238226 AATTGTGAAA
Statistics
Matches: 49, Mismatches: 11, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
54 49 1.00
ACGTcount: A:0.32, C:0.25, G:0.06, T:0.36
Consensus pattern (54 bp):
TACCCTCGACTTACAAAATTACCAAAGTACCCTCAATTTACAAAATTACCATTT
Found at i:51238337 original size:27 final size:27
Alignment explanation
Indices: 51238261--51238444 Score: 99
Period size: 27 Copynumber: 6.7 Consensus size: 27
51238251 TATAGGATAG
* *
51238261 AATTACCAAAATACCACTAG-TTTG-AGA
1 AATTATCAAAATACC-CTTGATTTGTA-A
* * **
51238288 AATTATCGAAATACTCTCAATTTGTAA
1 AATTATCAAAATACCCTTGATTTGTAA
**
51238315 AATTATCAAAATACCCTTGATTTACAA
1 AATTATCAAAATACCCTTGATTTGTAA
*
51238342 AATTA-CAGAAATACCCTTGACTTTTTTAAA
1 AATTATCA-AAATACCCTTGA--TTTGT-AA
* * **
51238372 AATTAT-AAGAATACCATTGGTTTACAA
1 AATTATCAA-AATACCCTTGATTTGTAA
* *
51238399 AATTA-CTGAAATACCCTTGATTTGTAG
1 AATTATC-AAAATACCCTTGATTTGTAA
* * *
51238426 ATTTACCAAAACACCCTTG
1 AATTATCAAAATACCCTTG
51238445 TAGGAGGAAA
Statistics
Matches: 120, Mismatches: 26, Indels: 22
0.71 0.15 0.13
Matches are distributed among these distances:
26 4 0.03
27 89 0.74
28 6 0.05
29 4 0.03
30 17 0.14
ACGTcount: A:0.41, C:0.17, G:0.09, T:0.33
Consensus pattern (27 bp):
AATTATCAAAATACCCTTGATTTGTAA
Found at i:51238912 original size:20 final size:20
Alignment explanation
Indices: 51238865--51238912 Score: 87
Period size: 20 Copynumber: 2.4 Consensus size: 20
51238855 GTTGGGCCTT
*
51238865 AATGGGCAGGAATCGGGCCC
1 AATGGGCTGGAATCGGGCCC
51238885 AATGGGCTGGAATCGGGCCC
1 AATGGGCTGGAATCGGGCCC
51238905 AATGGGCT
1 AATGGGCT
51238913 TTCGGGCCCA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.23, C:0.23, G:0.40, T:0.15
Consensus pattern (20 bp):
AATGGGCTGGAATCGGGCCC
Found at i:51238919 original size:17 final size:18
Alignment explanation
Indices: 51238876--51238922 Score: 60
Period size: 20 Copynumber: 2.6 Consensus size: 18
51238866 ATGGGCAGGA
51238876 ATCGGGCCCAATGGGCTGG
1 ATCGGGCCCAATGGGCT-G
51238895 AATCGGGCCCAATGGGCT-
1 -ATCGGGCCCAATGGGCTG
*
51238913 TTCGGGCCCA
1 ATCGGGCCCA
51238923 TTTGGGTAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
17 9 0.35
20 17 0.65
ACGTcount: A:0.17, C:0.30, G:0.36, T:0.17
Consensus pattern (18 bp):
ATCGGGCCCAATGGGCTG
Found at i:51239290 original size:20 final size:20
Alignment explanation
Indices: 51239265--51239351 Score: 122
Period size: 20 Copynumber: 4.3 Consensus size: 20
51239255 GATATGATAT
*
51239265 ACATGAT-TGATATGATATGC
1 ACATGATATG-TATGAAATGC
*
51239285 ACATGATATGTATAAAATGC
1 ACATGATATGTATGAAATGC
51239305 ACATGATATGTATGAAATGC
1 ACATGATATGTATGAAATGC
* *
51239325 ATATGATATGTACGAAATGC
1 ACATGATATGTATGAAATGC
51239345 ACATGAT
1 ACATGAT
51239352 GTATTCATAA
Statistics
Matches: 60, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
20 58 0.97
21 2 0.03
ACGTcount: A:0.40, C:0.10, G:0.18, T:0.31
Consensus pattern (20 bp):
ACATGATATGTATGAAATGC
Found at i:51239524 original size:25 final size:26
Alignment explanation
Indices: 51239401--51239562 Score: 197
Period size: 26 Copynumber: 6.3 Consensus size: 26
51239391 GAGGAAGTGC
*
51239401 AAAAGGGCTTATGGCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
* *
51239427 AAAAGGGCTTATGGCCTAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
**
51239453 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
* *
51239479 AAAAGGGATTATGCCACAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
*
51239505 AAAAGGGCTT-TGCCCCAGTTTACTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
* *
51239530 AAAAAGGCTT-TGCCCTAG-TTATT-
1 AAAAGGGCTTATGCCCCAGTTTATTG
51239553 AAAAGAGGCT
1 AAAAG-GGCT
51239563 AGGCCTCCAG
Statistics
Matches: 119, Mismatches: 16, Indels: 4
0.86 0.12 0.03
Matches are distributed among these distances:
23 4 0.03
24 8 0.07
25 29 0.24
26 78 0.66
ACGTcount: A:0.30, C:0.17, G:0.24, T:0.29
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATTG
Found at i:51239754 original size:42 final size:42
Alignment explanation
Indices: 51239695--51239786 Score: 139
Period size: 42 Copynumber: 2.2 Consensus size: 42
51239685 TAGTCTCCCC
* ** *
51239695 AAATGGGCTTGCATACATTCATTGGTATTTCATATGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATATGATATTG
*
51239737 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATATGATATTG
51239779 AAATGGGC
1 AAATGGGC
51239787 CTATAGGCCA
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.30, C:0.14, G:0.21, T:0.35
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCCATTGACATTACATATGATATTG
Found at i:51239845 original size:31 final size:31
Alignment explanation
Indices: 51239810--51239919 Score: 184
Period size: 31 Copynumber: 3.5 Consensus size: 31
51239800 CGTTTACAGT
*
51239810 AAAGGCTTCGGCCCAGTGAAATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
51239841 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
* *
51239872 AAAGGCTTCGGCCTAGTGATATGATTTATGT
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
51239903 AAAGGCTTCGGCTCAGT
1 AAAGGCTTCGGCCCAGT
51239920 AATCGTTAAA
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 74 1.00
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.29
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:51242035 original size:27 final size:27
Alignment explanation
Indices: 51242005--51242069 Score: 80
Period size: 27 Copynumber: 2.4 Consensus size: 27
51241995 ATTACCAAAG
* *
51242005 TACCCTCGATTTATAGAATTA-TCGTTT
1 TACCCTCGATTTACAAAATTACT-GTTT
51242032 TACCCTC-AGTTTACAAAATTACTGTTT
1 TACCCTCGA-TTTACAAAATTACTGTTT
51242059 TACCCTCGATT
1 TACCCTCGATT
51242070 GTGAAATTAC
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
26 1 0.03
27 30 0.91
28 2 0.06
ACGTcount: A:0.26, C:0.23, G:0.09, T:0.42
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACTGTTT
Found at i:51242199 original size:27 final size:27
Alignment explanation
Indices: 51242127--51242261 Score: 121
Period size: 27 Copynumber: 4.9 Consensus size: 27
51242117 CTGGTTTGAG
* ** *
51242127 AAATTACAGATATACCCTCAATTTGTA
1 AAATTACAGAAATACCCTTGATTTATA
51242154 AAATTACCA-AAATACCCTTGATTTATA
1 AAATTA-CAGAAATACCCTTGATTTATA
*
51242181 AAATTACAGAAATACCCTTGACTTTTTAAA
1 AAATTACAGAAATACCCTTGA---TTTATA
* * * *
51242211 AAATTATA-AGAATACCATTGGTTTACA
1 AAATTACAGA-AATACCCTTGATTTATA
*
51242238 AAATTACTGAAATACCCTTGATTT
1 AAATTACAGAAATACCCTTGATTT
51242262 GTAGATTTAC
Statistics
Matches: 88, Mismatches: 13, Indels: 14
0.77 0.11 0.12
Matches are distributed among these distances:
26 2 0.02
27 61 0.69
28 3 0.03
29 1 0.01
30 21 0.24
ACGTcount: A:0.42, C:0.16, G:0.07, T:0.34
Consensus pattern (27 bp):
AAATTACAGAAATACCCTTGATTTATA
Found at i:51243111 original size:20 final size:20
Alignment explanation
Indices: 51243086--51243152 Score: 100
Period size: 20 Copynumber: 3.4 Consensus size: 20
51243076 GATATGATAT
*
51243086 ACATGAT-TGATATGATATGC
1 ACATGATATG-TATGAAATGC
*
51243106 ACATGATATGTATAAAATGC
1 ACATGATATGTATGAAATGC
51243126 ACATGATATGTATGAAATGC
1 ACATGATATGTATGAAATGC
51243146 ACATGAT
1 ACATGAT
51243153 GTATTCATAA
Statistics
Matches: 43, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
20 41 0.95
21 2 0.05
ACGTcount: A:0.40, C:0.10, G:0.18, T:0.31
Consensus pattern (20 bp):
ACATGATATGTATGAAATGC
Found at i:51243327 original size:25 final size:26
Alignment explanation
Indices: 51243202--51243363 Score: 224
Period size: 26 Copynumber: 6.3 Consensus size: 26
51243192 GAGGAAGTGC
*
51243202 AAAAGGGCTTATACCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
51243228 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
**
51243254 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
*
51243280 AAAAGGGCTTATGCCCCTGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
* **
51243306 AAAAGGGCTT-TGCCCCAATTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
51243331 AAAAGGGCTT-TGCCCCAG-TTATT-
1 AAAAGGGCTTATGCCCCAGTTTATTG
51243354 AAAAGAGGCT
1 AAAAG-GGCT
51243364 AGGCCTCCAA
Statistics
Matches: 122, Mismatches: 13, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
23 5 0.04
24 7 0.06
25 28 0.23
26 82 0.67
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATTG
Found at i:51243646 original size:31 final size:31
Alignment explanation
Indices: 51243611--51243720 Score: 184
Period size: 31 Copynumber: 3.5 Consensus size: 31
51243601 CGTTTACAGT
*
51243611 AAAGGCTTCGGCCCAGTGAAATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
51243642 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
* * *
51243673 AAAGGCTTCGGCCTAATGATATGATTTAAGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
51243704 AAAGGCTTCGGCCCAGT
1 AAAGGCTTCGGCCCAGT
51243721 AACCGTTAAA
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 73 1.00
ACGTcount: A:0.31, C:0.17, G:0.25, T:0.26
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:51246010 original size:27 final size:27
Alignment explanation
Indices: 51245938--51246071 Score: 128
Period size: 27 Copynumber: 4.9 Consensus size: 27
51245928 CTGGTTTGAG
* ** *
51245938 AAATTACAGATATACCCTCAATTTGTA
1 AAATTACAGAAATACCCTTGATTTATA
51245965 AAATTACCA-AAATACCCTTGATTTATA
1 AAATTA-CAGAAATACCCTTGATTTATA
*
51245992 AAATTACAGAAATACCCTTGACTTTTTAA
1 AAATTACAGAAATACCCTTGA-TTTAT-A
* * * *
51246021 AAATTATA-AGAATACCATTGGTTTACA
1 AAATTACAGA-AATACCCTTGATTTATA
*
51246048 AAATTACTGAAATACCCTTGATTT
1 AAATTACAGAAATACCCTTGATTT
51246072 GTAGATTTAC
Statistics
Matches: 87, Mismatches: 14, Indels: 12
0.77 0.12 0.11
Matches are distributed among these distances:
26 2 0.02
27 57 0.66
28 11 0.13
29 17 0.20
ACGTcount: A:0.42, C:0.16, G:0.07, T:0.34
Consensus pattern (27 bp):
AAATTACAGAAATACCCTTGATTTATA
Found at i:51246919 original size:20 final size:20
Alignment explanation
Indices: 51246894--51246960 Score: 100
Period size: 20 Copynumber: 3.4 Consensus size: 20
51246884 GATATGATAT
*
51246894 ACATGAT-TGATATGATATGC
1 ACATGATATG-TATGAAATGC
*
51246914 ACATGATATGTATAAAATGC
1 ACATGATATGTATGAAATGC
51246934 ACATGATATGTATGAAATGC
1 ACATGATATGTATGAAATGC
51246954 ACATGAT
1 ACATGAT
51246961 GTATTCATAA
Statistics
Matches: 43, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
20 41 0.95
21 2 0.05
ACGTcount: A:0.40, C:0.10, G:0.18, T:0.31
Consensus pattern (20 bp):
ACATGATATGTATGAAATGC
Found at i:51247135 original size:25 final size:26
Alignment explanation
Indices: 51247010--51247171 Score: 224
Period size: 26 Copynumber: 6.3 Consensus size: 26
51247000 GAGGAAGTGC
*
51247010 AAAAGGGCTTATACCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
51247036 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
**
51247062 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
*
51247088 AAAAGGGCTTATGCCCCTGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
* **
51247114 AAAAGGGCTT-TGCCCCAATTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
51247139 AAAAGGGCTT-TGCCCCAG-TTATT-
1 AAAAGGGCTTATGCCCCAGTTTATTG
51247162 AAAAGAGGCT
1 AAAAG-GGCT
51247172 AGGCCTCCAA
Statistics
Matches: 122, Mismatches: 13, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
23 5 0.04
24 7 0.06
25 28 0.23
26 82 0.67
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATTG
Found at i:51247453 original size:31 final size:31
Alignment explanation
Indices: 51247418--51247527 Score: 184
Period size: 31 Copynumber: 3.5 Consensus size: 31
51247408 CGTTTACAGT
*
51247418 AAAGGCTTCGGCCCAGTGAAATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
51247449 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
* * *
51247480 AAAGGCTTCGGCCTAATGATATGATTTAAGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
51247511 AAAGGCTTCGGCCCAGT
1 AAAGGCTTCGGCCCAGT
51247528 AACCGTTAAA
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 73 1.00
ACGTcount: A:0.31, C:0.17, G:0.25, T:0.26
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:51249644 original size:27 final size:27
Alignment explanation
Indices: 51249610--51249697 Score: 106
Period size: 27 Copynumber: 3.3 Consensus size: 27
51249600 ATTACCAAAG
* * *
51249610 TACCCTCGATTTATAGAATTATCGTTT
1 TACCCTCGATTTAAAAAATTACCGTTT
* * *
51249637 TACTCTCGATTTACAAAATTACCATTT
1 TACCCTCGATTTAAAAAATTACCGTTT
51249664 TACCCTC-AGTTTAAAAAATTACCGTTT
1 TACCCTCGA-TTTAAAAAATTACCGTTT
51249691 TACCCTC
1 TACCCTC
51249698 AATTGTGAAA
Statistics
Matches: 52, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
26 1 0.02
27 51 0.98
ACGTcount: A:0.30, C:0.24, G:0.07, T:0.40
Consensus pattern (27 bp):
TACCCTCGATTTAAAAAATTACCGTTT
Found at i:51249770 original size:27 final size:27
Alignment explanation
Indices: 51249664--51249802 Score: 90
Period size: 27 Copynumber: 5.2 Consensus size: 27
51249654 ATTACCATTT
* * ****
51249664 TACCCTCAGTTTAAAAAATTACCGTTT
1 TACCCTCAATTTGAAAAATTACCAAAA
*
51249691 TACCCTCAATTGTG--AAATTACTAAAA
1 TACCCTCAATT-TGAAAAATTACCAAAA
** *
51249717 TACCCT--ATAGGATAGAATTACCAAAA
1 TACCCTCAATTTGA-AAAATTACCAAAA
* * *
51249743 TACCACT-AGTTTGAAAAATTATCGAAA
1 TACC-CTCAATTTGAAAAATTACCAAAA
*
51249770 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTCAATTTGAAAAATTACCAAAA
51249797 TACCCT
1 TACCCT
51249803 GATTTACAAA
Statistics
Matches: 84, Mismatches: 21, Indels: 14
0.71 0.18 0.12
Matches are distributed among these distances:
23 1 0.01
24 2 0.02
26 29 0.35
27 48 0.57
28 4 0.05
ACGTcount: A:0.41, C:0.21, G:0.08, T:0.30
Consensus pattern (27 bp):
TACCCTCAATTTGAAAAATTACCAAAA
Found at i:51249814 original size:26 final size:24
Alignment explanation
Indices: 51249705--51249825 Score: 73
Period size: 27 Copynumber: 4.6 Consensus size: 24
51249695 CTCAATTGTG
* **
51249705 AAATTACTAAAATACCCTATAGGATA
1 AAATTACCAAAATACCCTAT-TTA-A
*
51249731 GAATTACCAAAATACCACTAGTTTGAA
1 AAATTACCAAAATACC-CTA-TTT-AA
* * *
51249758 AAATTATCGAAATACCCTCAATTTGTA
1 AAATTACCAAAATACCCT--ATTT-AA
51249785 AAATTACCAAAATACCCTGATTTACA
1 AAATTACCAAAATACCCT-ATTTA-A
51249811 AAATTA-CAGAAATAC
1 AAATTACCA-AAATAC
51249826 ATTTGGCTTT
Statistics
Matches: 76, Mismatches: 12, Indels: 14
0.75 0.12 0.14
Matches are distributed among these distances:
25 2 0.03
26 33 0.43
27 38 0.50
28 3 0.04
ACGTcount: A:0.47, C:0.18, G:0.07, T:0.27
Consensus pattern (24 bp):
AAATTACCAAAATACCCTATTTAA
Found at i:51250739 original size:20 final size:20
Alignment explanation
Indices: 51250714--51250780 Score: 100
Period size: 20 Copynumber: 3.4 Consensus size: 20
51250704 GATATGATAT
*
51250714 ACATGAT-TGATATGATATGC
1 ACATGATATG-TATGAAATGC
*
51250734 ACATGATATGTATAAAATGC
1 ACATGATATGTATGAAATGC
51250754 ACATGATATGTATGAAATGC
1 ACATGATATGTATGAAATGC
51250774 ACATGAT
1 ACATGAT
51250781 GTATTCATAA
Statistics
Matches: 43, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
20 41 0.95
21 2 0.05
ACGTcount: A:0.40, C:0.10, G:0.18, T:0.31
Consensus pattern (20 bp):
ACATGATATGTATGAAATGC
Found at i:51250880 original size:26 final size:26
Alignment explanation
Indices: 51250830--51250990 Score: 242
Period size: 26 Copynumber: 6.3 Consensus size: 26
51250820 GAGGAAGTGC
51250830 AAAAGGGCTTATG-CCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
*
51250855 AAAAGGGCTTATGCACCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
**
51250881 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
51250907 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
*
51250933 AAAAGGGCTT-TGCCCCAGTTTATCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
51250958 AAAAGGGCTT-TGCCCCAG-TTATT-
1 AAAAGGGCTTATGCCCCAGTTTATTG
51250981 AAAAGAGGCT
1 AAAAG-GGCT
51250991 AGGCCTCCAA
Statistics
Matches: 126, Mismatches: 8, Indels: 5
0.91 0.06 0.04
Matches are distributed among these distances:
23 5 0.04
24 8 0.06
25 45 0.36
26 68 0.54
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.28
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATTG
Found at i:51251173 original size:42 final size:42
Alignment explanation
Indices: 51251114--51251205 Score: 130
Period size: 42 Copynumber: 2.2 Consensus size: 42
51251104 TAGTCTCCCC
* * ** *
51251114 AAATGGGCTTGCATACATTCATTGGTATTTCATATGATATTG
1 AAATGGGCTAGCATACATCCATTGACATTACATATGATATTG
*
51251156 AAATGGGCTAGCATACATCCATTGACATTACATGTGATATTG
1 AAATGGGCTAGCATACATCCATTGACATTACATATGATATTG
51251198 AAATGGGC
1 AAATGGGC
51251206 CTATGGGCCA
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 44 1.00
ACGTcount: A:0.32, C:0.14, G:0.21, T:0.34
Consensus pattern (42 bp):
AAATGGGCTAGCATACATCCATTGACATTACATATGATATTG
Found at i:51253038 original size:40 final size:40
Alignment explanation
Indices: 51252983--51253232 Score: 385
Period size: 40 Copynumber: 6.2 Consensus size: 40
51252973 AACATTGGAA
51252983 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
51253023 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
51253063 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
51253103 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
51253143 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
51253182 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
51253223 CTATATCCGG
1 ATATATCCGG
51253233 TTAAATCCCG
Statistics
Matches: 191, Mismatches: 17, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
39 2 0.01
40 189 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:51261213 original size:40 final size:40
Alignment explanation
Indices: 51261158--51261408 Score: 378
Period size: 40 Copynumber: 6.2 Consensus size: 40
51261148 AACATTGGAA
51261158 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
51261198 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
51261238 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTG-CGAGTTG
51261279 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
51261319 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
51261358 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
51261399 CTATATCCGG
1 ATATATCCGG
51261409 TTAAATCCCG
Statistics
Matches: 191, Mismatches: 17, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
39 2 0.01
40 149 0.78
41 40 0.21
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:51261378 original size:121 final size:120
Alignment explanation
Indices: 51261158--51261408 Score: 378
Period size: 121 Copynumber: 2.1 Consensus size: 120
51261148 AACATTGGAA
51261158 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGG
* * * * * *
51261223 CATTCGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCATTCGTGCCGAGTTG
66 CATTCGTGCAAGTTCACAAATCCGGGCTAAGACCCGAAGGCAATCGTG-CGAGTCG
51261279 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGG
* * * *
51261344 CCTTTGTGCAAG-TCACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
66 CATTCGTGCAAGTTCA-CAAATCCGGGCTAAGACCCGAAGGCAATCGTGCGAGTCG
*
51261399 CTATATCCGG
1 ATATATCCGG
51261409 TTAAATCCCG
Statistics
Matches: 118, Mismatches: 11, Indels: 3
0.89 0.08 0.02
Matches are distributed among these distances:
120 17 0.14
121 101 0.86
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (120 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGG
CATTCGTGCAAGTTCACAAATCCGGGCTAAGACCCGAAGGCAATCGTGCGAGTCG
Found at i:51262809 original size:31 final size:31
Alignment explanation
Indices: 51262774--51262883 Score: 202
Period size: 31 Copynumber: 3.5 Consensus size: 31
51262764 CGTTTACAGT
*
51262774 AAAGGCTTCGGCCCAGTGAAATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
51262805 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
51262836 AAAGGCTTCGGCCCAGTGGTATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
51262867 AAAGGCTTCGGCCCAGT
1 AAAGGCTTCGGCCCAGT
51262884 AACCGTTAAA
Statistics
Matches: 77, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 77 1.00
ACGTcount: A:0.28, C:0.18, G:0.27, T:0.26
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:51267440 original size:28 final size:28
Alignment explanation
Indices: 51267408--51267511 Score: 86
Period size: 28 Copynumber: 3.7 Consensus size: 28
51267398 TTACCAATAT
51267408 ATATGGCCCACTAAGCCCAATCTCTTTC
1 ATATGGCCCACTAAGCCCAATCTCTTTC
* * *
51267436 ATATGGCCCATTAGGCCCAATCATATTT-
1 ATATGGCCCACTAAGCCCAATC-TCTTTC
* * * * * *
51267464 ATGTGGCTCATTAGGCCCAAATCACATTC
1 ATATGGCCCACTAAGCCC-AATCTCTTTC
*
51267493 ATAT-GACCACTAAGCCCAA
1 ATATGGCCCACTAAGCCCAA
51267512 ATCACATTTA
Statistics
Matches: 60, Mismatches: 13, Indels: 7
0.75 0.16 0.09
Matches are distributed among these distances:
27 2 0.03
28 47 0.78
29 11 0.18
ACGTcount: A:0.30, C:0.30, G:0.13, T:0.27
Consensus pattern (28 bp):
ATATGGCCCACTAAGCCCAATCTCTTTC
Found at i:51269579 original size:11 final size:11
Alignment explanation
Indices: 51269563--51269587 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
51269553 ATATCTAGAA
51269563 TTCTCTTCATT
1 TTCTCTTCATT
51269574 TTCTCTTCATT
1 TTCTCTTCATT
51269585 TTC
1 TTC
51269588 ATCAGCTGGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.08, C:0.28, G:0.00, T:0.64
Consensus pattern (11 bp):
TTCTCTTCATT
Found at i:51270877 original size:25 final size:25
Alignment explanation
Indices: 51270844--51270892 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
51270834 AATAATTTGC
*
51270844 ATATTTGATATTGCCTAATAAATGA
1 ATATCTGATATTGCCTAATAAATGA
* *
51270869 ATATCTGATATTGCTTAGTAAATG
1 ATATCTGATATTGCCTAATAAATG
51270893 TCAAGCCAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.37, C:0.08, G:0.14, T:0.41
Consensus pattern (25 bp):
ATATCTGATATTGCCTAATAAATGA
Found at i:51271555 original size:10 final size:10
Alignment explanation
Indices: 51271540--51271567 Score: 56
Period size: 10 Copynumber: 2.8 Consensus size: 10
51271530 ATATTACATG
51271540 TTTACTTTGT
1 TTTACTTTGT
51271550 TTTACTTTGT
1 TTTACTTTGT
51271560 TTTACTTT
1 TTTACTTT
51271568 TCCCCTTAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.11, C:0.11, G:0.07, T:0.71
Consensus pattern (10 bp):
TTTACTTTGT
Found at i:51271917 original size:24 final size:24
Alignment explanation
Indices: 51271888--51271936 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
51271878 CTCTTAAAGG
51271888 TATGAATAAATGTTATATTTAAAT
1 TATGAATAAATGTTATATTTAAAT
51271912 TATGAATAAATGTTATATTTAAAT
1 TATGAATAAATGTTATATTTAAAT
51271936 T
1 T
51271937 TATGTGTATA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.45, C:0.00, G:0.08, T:0.47
Consensus pattern (24 bp):
TATGAATAAATGTTATATTTAAAT
Found at i:51272128 original size:21 final size:23
Alignment explanation
Indices: 51272081--51272130 Score: 59
Period size: 21 Copynumber: 2.2 Consensus size: 23
51272071 GAAATTGATA
*
51272081 TGAATATGTGATTATTACGAAATC
1 TGAATATGTGATTATTA-GAAAAC
*
51272105 TGAATATTTG-TTATT-GAAAAC
1 TGAATATGTGATTATTAGAAAAC
51272126 TGAAT
1 TGAAT
51272131 TGAATTGTAT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
21 10 0.42
23 5 0.21
24 9 0.38
ACGTcount: A:0.38, C:0.06, G:0.16, T:0.40
Consensus pattern (23 bp):
TGAATATGTGATTATTAGAAAAC
Found at i:51272663 original size:23 final size:23
Alignment explanation
Indices: 51272633--51272676 Score: 79
Period size: 23 Copynumber: 1.9 Consensus size: 23
51272623 CTTTGTCAAT
51272633 CAGGCACTTTATGTGACGTATAC
1 CAGGCACTTTATGTGACGTATAC
*
51272656 CAGGCACTTTATGTGTCGTAT
1 CAGGCACTTTATGTGACGTAT
51272677 TTCAAGTACC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.23, C:0.20, G:0.23, T:0.34
Consensus pattern (23 bp):
CAGGCACTTTATGTGACGTATAC
Found at i:51273584 original size:22 final size:22
Alignment explanation
Indices: 51273556--51273624 Score: 77
Period size: 22 Copynumber: 3.1 Consensus size: 22
51273546 TCTTTGATTA
*
51273556 TTAGCACATTAGTGCTCTCCGT
1 TTAGCACATTAGTGCTCTCTGT
*
51273578 TTAGCACATCT-GTGCTATCTGT
1 TTAGCACAT-TAGTGCTCTCTGT
* * *
51273600 ATAACACTTTAGTGCTCTCTGT
1 TTAGCACATTAGTGCTCTCTGT
51273622 TTA
1 TTA
51273625 ATAGTGCATA
Statistics
Matches: 38, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
21 1 0.03
22 36 0.95
23 1 0.03
ACGTcount: A:0.20, C:0.23, G:0.16, T:0.41
Consensus pattern (22 bp):
TTAGCACATTAGTGCTCTCTGT
Found at i:51280520 original size:55 final size:55
Alignment explanation
Indices: 51280432--51280542 Score: 195
Period size: 55 Copynumber: 2.0 Consensus size: 55
51280422 CATCGACATT
*
51280432 GAGACGAGAGCTAGTGTAAGACATGTTTGGGACATGCATCGGCCTCAAGATGTAA
1 GAGACGAGAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCAAGATGTAA
* *
51280487 GAGATGAGAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGTAA
1 GAGACGAGAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCAAGATGTAA
51280542 G
1 G
51280543 CCAGTGTAAG
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
55 53 1.00
ACGTcount: A:0.30, C:0.16, G:0.32, T:0.22
Consensus pattern (55 bp):
GAGACGAGAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCAAGATGTAA
Found at i:51280549 original size:46 final size:50
Alignment explanation
Indices: 51280491--51280718 Score: 220
Period size: 46 Copynumber: 4.8 Consensus size: 50
51280481 ATGTAAGAGA
*
51280491 TGAGAGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCT-CGAGATG
1 TGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGG-CTACGAGATG
*
51280539 T-A-AGCCAGTGTAAGA-CGTGTCTGGGACAT-GCATCGGCTAC-ATGATG
1 TGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCTACGA-GATG
** *
51280585 T----GTTAGTGTAAGACCATGTCTAGGACATGGCATCGG-TACG-GATACG
1 TGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCTACGAGAT--G
* * * *
51280631 TGAGAGTCAGTGTAAGACCATGTCTGGGACATGGCATCGACT--TA-ACG
1 TGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCTACGAGATG
51280678 TGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC
1 TGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC
51280719 ATTATACCCT
Statistics
Matches: 154, Mismatches: 13, Indels: 27
0.79 0.07 0.14
Matches are distributed among these distances:
44 13 0.08
45 18 0.12
46 47 0.31
47 41 0.27
48 1 0.01
49 1 0.01
50 32 0.21
51 1 0.01
ACGTcount: A:0.26, C:0.19, G:0.32, T:0.23
Consensus pattern (50 bp):
TGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCTACGAGATG
Found at i:51280585 original size:101 final size:103
Alignment explanation
Indices: 51280387--51280575 Score: 276
Period size: 101 Copynumber: 1.9 Consensus size: 103
51280377 CAGCCACATT
* *
51280387 ATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACATTGAGACGAGAGCTAGTGTAAG
1 ATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACATCGAGACGAGAGCCAGTGTAAG
*
51280452 ACATGTTTGGGACATGCATCGGCCTCAAGATGTAAGAG
66 ACATGTCTGGGACATGCATCGGCCTCAAGATGTAAGAG
* * * *
51280490 ATGAGAGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGATGTA-AGCCAGTGTAA
1 ATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACATCGAGACG-AGAGCCAGTGTAA
*
51280552 GACGTGTCTGGGACATGCATCGGC
65 GACATGTCTGGGACATGCATCGGC
51280576 TACATGATGT
Statistics
Matches: 77, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
101 45 0.58
102 15 0.19
103 17 0.22
ACGTcount: A:0.28, C:0.19, G:0.32, T:0.22
Consensus pattern (103 bp):
ATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACATCGAGACGAGAGCCAGTGTAAG
ACATGTCTGGGACATGCATCGGCCTCAAGATGTAAGAG
Found at i:51280650 original size:50 final size:48
Alignment explanation
Indices: 51280491--51280717 Score: 213
Period size: 47 Copynumber: 4.8 Consensus size: 48
51280481 ATGTAAGAGA
* * * *
51280491 TGAGAGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGATG
1 TGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGAC-GGA-ACG
* * *
51280539 T-A-AGCCAGTGTAAGA-CGTGTCTGGGACAT-GCATCGG-C--TACA
1 TGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGACGGAACG
* ** *
51280580 TGATGTGTTAGTGTAAGACCATGTCTAGGACATGGCATCGGTACGGATACG
1 TGA-GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGG-ACGGA-ACG
* **
51280631 TGAGAGTCAGTGTAAGACCATGTCTGGGACATGGCATC-GACTTAACG
1 TGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGACGGAACG
51280678 TGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGG
1 TGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGG
51280718 CATTATACCC
Statistics
Matches: 150, Mismatches: 18, Indels: 22
0.79 0.09 0.12
Matches are distributed among these distances:
41 2 0.01
42 1 0.01
44 10 0.07
45 13 0.09
46 39 0.26
47 41 0.27
48 6 0.04
49 1 0.01
50 32 0.21
51 5 0.03
ACGTcount: A:0.26, C:0.19, G:0.32, T:0.23
Consensus pattern (48 bp):
TGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGACGGAACG
Found at i:51280698 original size:97 final size:90
Alignment explanation
Indices: 51280490--51280718 Score: 259
Period size: 97 Copynumber: 2.5 Consensus size: 90
51280480 GATGTAAGAG
51280490 ATGAGAGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGATGTAAGCCAGTGTAAG
1 ATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGG-CTCGAGATGTAAGCCAGTGTAAG
* *
51280553 ACGTGTCTGGGACATGCATCGGCTAC
65 ACATGTCTGGGACATGCATCGACTAC
* * * *
51280579 ATGATGTGTTAGTGTAAGACCATGTCTAGGACATGGCATCGG-TACG-GATACGTGAGAGTCAGT
1 ATGA-GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCT-CGAGAT--GT-A-AGCCAGT
51280642 GTAAGACCATGTCTGGGACATGGCATCGACTTAAC
60 GTAAGA-CATGTCTGGGACAT-GCATCGAC-T-AC
* *
51280677 GTGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC
1 ATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGC
51280719 ATTATACCCT
Statistics
Matches: 116, Mismatches: 11, Indels: 17
0.81 0.08 0.12
Matches are distributed among these distances:
89 4 0.03
90 16 0.14
91 15 0.13
92 9 0.08
93 1 0.01
94 12 0.10
95 13 0.11
96 7 0.06
97 34 0.29
98 5 0.04
ACGTcount: A:0.26, C:0.19, G:0.31, T:0.23
Consensus pattern (90 bp):
ATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCTCGAGATGTAAGCCAGTGTAAGA
CATGTCTGGGACATGCATCGACTAC
Found at i:51283933 original size:40 final size:40
Alignment explanation
Indices: 51283896--51284078 Score: 182
Period size: 40 Copynumber: 4.6 Consensus size: 40
51283886 GCTACTCGTT
*
51283896 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * *
51283936 CAAATGCCTTCGGGACTTAACCTAGATT-TAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCC-CGGTTATAGTAACTCGCA
*
51283976 C-AATGCCTTCGGG-CTTAGCCCGG-AATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
* * * * *
51284014 CAAATGCCTTC-GGATCTCAGTCTGGATT-TAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGG-TTATAGTAAC-TCGCA
51284055 CAAA-GCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
51284079 ACATCATTCG
Statistics
Matches: 116, Mismatches: 17, Indels: 20
0.76 0.11 0.13
Matches are distributed among these distances:
37 1 0.01
38 21 0.18
39 21 0.18
40 59 0.51
41 14 0.12
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:51284018 original size:78 final size:81
Alignment explanation
Indices: 51283898--51284079 Score: 239
Period size: 78 Copynumber: 2.3 Consensus size: 81
51283888 TACTCGTTCA
* * *
51283898 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCTAG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTCAACCTAG
*
51283961 ATTTAGTAAC-TCGCAC
65 ATTTAGTAACTTAGCAC
** *
51283977 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGATCTCAGTCTGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTCAACCTAGA
*
51284040 TTTAGTCACTTAGCAC
66 TTTAGTAACTTAGCAC
*
51284056 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
51284080 CATCATTCGA
Statistics
Matches: 90, Mismatches: 9, Indels: 7
0.85 0.08 0.07
Matches are distributed among these distances:
77 3 0.03
78 47 0.52
79 29 0.32
80 11 0.12
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTCAACCTAGA
TTTAGTAACTTAGCAC
Found at i:51292449 original size:42 final size:44
Alignment explanation
Indices: 51292345--51292503 Score: 130
Period size: 43 Copynumber: 3.7 Consensus size: 44
51292335 TATGTGTTAT
* * * *
51292345 CGTGTAAGACCAC-GTCTGGGACATTGGCATAGATTTGTGATTTA
1 CGTGTAAGACC-CTGTCTGGGACATTGGCATCGATATATAATTTA
** *
51292389 CGTGTAAGACAATGTCTGGAACATTGGCATCG-TATATAATTT-
1 CGTGTAAGACCCTGTCTGGGACATTGGCATCGATATATAATTTA
* * * * *
51292431 TGTGTAAGACCCTGTCTGGGACAGTGGCATCAATATTTGA-TTA
1 CGTGTAAGACCCTGTCTGGGACATTGGCATCGATATATAATTTA
* * *
51292474 CATGTAAGACCAC-ATCTGGGACGTTGGCAT
1 CGTGTAAGACC-CTGTCTGGGACATTGGCAT
51292504 TGTACGAGCT
Statistics
Matches: 91, Mismatches: 20, Indels: 9
0.76 0.17 0.08
Matches are distributed among these distances:
42 28 0.31
43 35 0.38
44 28 0.31
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (44 bp):
CGTGTAAGACCCTGTCTGGGACATTGGCATCGATATATAATTTA
Found at i:51294202 original size:2 final size:2
Alignment explanation
Indices: 51294195--51294228 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
51294185 GCTTCGCCAC
51294195 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
51294229 CTGTTCTGGT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:51294277 original size:27 final size:26
Alignment explanation
Indices: 51294225--51294284 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
51294215 ATATATATAT
*
51294225 ATATCTGTTCTGGTGGCCTAGCCACA
1 ATATCTGTTCTGGTGACCTAGCCACA
* * *
51294251 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGT-TCTGGTGACCTAGCCACA
51294278 ATATCTG
1 ATATCTG
51294285 GCAGCCTCGC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.35
Consensus pattern (26 bp):
ATATCTGTTCTGGTGACCTAGCCACA
Found at i:51296363 original size:28 final size:28
Alignment explanation
Indices: 51296298--51296398 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
51296288 ATAGTGAATC
*
51296298 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
51296327 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
51296355 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
51296385 CGCACACTTAGTGC
1 CGCACACTTAGTGC
51296399 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:51301303 original size:29 final size:29
Alignment explanation
Indices: 51301270--51301401 Score: 140
Period size: 29 Copynumber: 4.6 Consensus size: 29
51301260 GTGACGAGAT
*
51301270 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATACA
* *
51301299 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATACA
* * ***
51301328 TGGCACTAAGTGTGCGAGCTCGAAGGGCA
1 TGGCACTAAGTGTGCGTGCTGGAAATACA
* * * *
51301357 TGGCACTATGTGTGCGGGCT-TAAATCGCA
1 TGGCACTAAGTGTGCGTGCTGGAAAT-ACA
51301386 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
51301402 AAATCGAGTA
Statistics
Matches: 88, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
28 2 0.02
29 86 0.98
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATACA
Found at i:51309184 original size:29 final size:29
Alignment explanation
Indices: 51309151--51309282 Score: 140
Period size: 29 Copynumber: 4.6 Consensus size: 29
51309141 GTGACGAGAT
*
51309151 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATACA
* *
51309180 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATACA
* * ***
51309209 TGGCACTAAGTGTGCGAGCTCGAAGGGCA
1 TGGCACTAAGTGTGCGTGCTGGAAATACA
* * * *
51309238 TGGCACTATGTGTGCGGGCT-TAAATCGCA
1 TGGCACTAAGTGTGCGTGCTGGAAAT-ACA
51309267 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
51309283 AAATCGAGTA
Statistics
Matches: 88, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
28 2 0.02
29 86 0.98
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATACA
Found at i:51314360 original size:36 final size:36
Alignment explanation
Indices: 51314270--51314341 Score: 126
Period size: 36 Copynumber: 2.0 Consensus size: 36
51314260 TGCATATTTG
* *
51314270 AAAACTCTTTGAAAATAAAATGAGAGAAAAAAAACT
1 AAAACTATTTAAAAATAAAATGAGAGAAAAAAAACT
51314306 AAAACTATTTAAAAATAAAATGAGAGAAAAAAAACT
1 AAAACTATTTAAAAATAAAATGAGAGAAAAAAAACT
51314342 GGGATAATTT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.64, C:0.07, G:0.10, T:0.19
Consensus pattern (36 bp):
AAAACTATTTAAAAATAAAATGAGAGAAAAAAAACT
Found at i:51319703 original size:18 final size:18
Alignment explanation
Indices: 51319669--51319706 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
51319659 ATCAAACTAT
*
51319669 TATTTTAATATTTTTACA
1 TATTTAAATATTTTTACA
51319687 TATTTAAAT-TTTATTACA
1 TATTTAAATATTT-TTACA
51319705 TA
1 TA
51319707 AATTGGTTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 3 0.17
18 15 0.83
ACGTcount: A:0.37, C:0.05, G:0.00, T:0.58
Consensus pattern (18 bp):
TATTTAAATATTTTTACA
Found at i:51322424 original size:25 final size:25
Alignment explanation
Indices: 51322390--51322437 Score: 96
Period size: 25 Copynumber: 1.9 Consensus size: 25
51322380 CTCTCGTTGC
51322390 ACGAAAGTTTTGTTTATTAAAATTA
1 ACGAAAGTTTTGTTTATTAAAATTA
51322415 ACGAAAGTTTTGTTTATTAAAAT
1 ACGAAAGTTTTGTTTATTAAAAT
51322438 GCATAATTTC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.40, C:0.04, G:0.12, T:0.44
Consensus pattern (25 bp):
ACGAAAGTTTTGTTTATTAAAATTA
Found at i:51322572 original size:13 final size:13
Alignment explanation
Indices: 51322554--51322579 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
51322544 TTTAGGGTGC
51322554 ATACACCAGTTTA
1 ATACACCAGTTTA
51322567 ATACACCAGTTTA
1 ATACACCAGTTTA
51322580 TTTTATTCAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.23, G:0.08, T:0.31
Consensus pattern (13 bp):
ATACACCAGTTTA
Found at i:51325105 original size:16 final size:16
Alignment explanation
Indices: 51325080--51325110 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
51325070 CCTCTCACTT
*
51325080 TAATATTATTTTAATA
1 TAATACTATTTTAATA
51325096 TAATACTATTTTAAT
1 TAATACTATTTTAAT
51325111 TAAGATTTAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.03, G:0.00, T:0.55
Consensus pattern (16 bp):
TAATACTATTTTAATA
Found at i:51325108 original size:27 final size:27
Alignment explanation
Indices: 51325078--51325146 Score: 70
Period size: 27 Copynumber: 2.5 Consensus size: 27
51325068 TACCTCTCAC
*
51325078 TTTAATATTATTTTAATATAATACT-AT
1 TTTAATATTATTTTAATATAACA-TAAT
* *
51325105 TTTAAT-TAAGATTTAATATAACATAAT
1 TTTAATATTA-TTTTAATATAACATAAT
51325132 TTTAATATATATTTT
1 TTTAATAT-TATTTT
51325147 TTATACATTT
Statistics
Matches: 33, Mismatches: 5, Indels: 7
0.73 0.11 0.16
Matches are distributed among these distances:
26 3 0.09
27 25 0.76
28 4 0.12
29 1 0.03
ACGTcount: A:0.42, C:0.03, G:0.01, T:0.54
Consensus pattern (27 bp):
TTTAATATTATTTTAATATAACATAAT
Found at i:51328512 original size:13 final size:13
Alignment explanation
Indices: 51328494--51328519 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
51328484 TTAGTCAGAT
51328494 TAGGACTTATAAA
1 TAGGACTTATAAA
51328507 TAGGACTTATAAA
1 TAGGACTTATAAA
51328520 CTTCTCATTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.08, G:0.15, T:0.31
Consensus pattern (13 bp):
TAGGACTTATAAA
Found at i:51348458 original size:27 final size:27
Alignment explanation
Indices: 51348428--51348902 Score: 403
Period size: 27 Copynumber: 17.6 Consensus size: 27
51348418 TTAGTTCACA
51348428 AAAATTACCAAAATACCCCTGATTTGT
1 AAAATTACCAAAATACCCCTGATTTGT
* * * *
51348455 AAAATTACTAAAATACCCTTGGTTTAT
1 AAAATTACCAAAATACCCCTGATTTGT
* *
51348482 AAAATCACCAAAATACCCCTGGTTTGT
1 AAAATTACCAAAATACCCCTGATTTGT
* * * *
51348509 AAAATTACTAAAATACCCTTGGTTTAT
1 AAAATTACCAAAATACCCCTGATTTGT
* *
51348536 AAAATCACTAAAATACCCCT-AGTTTGT
1 AAAATTACCAAAATACCCCTGA-TTTGT
** * **
51348563 AAAATTACCAAAATACCATTGGTTTAC
1 AAAATTACCAAAATACCCCTGATTTGT
* *
51348590 AAAATTACCAAAATACCCTTGGTTTGT
1 AAAATTACCAAAATACCCCTGATTTGT
* * ** * *
51348617 AAAATTACTAAAACACCATTGGTTTAT
1 AAAATTACCAAAATACCCCTGATTTGT
*
51348644 AAAATCACCAAAATACCCCT-AGTTTGT
1 AAAATTACCAAAATACCCCTGA-TTTGT
* * * **
51348671 AAAATTACCAAAGTACCCTTGGTTTAC
1 AAAATTACCAAAATACCCCTGATTTGT
* *
51348698 AAAATCACCAAAATA-CCCTTAGTTTGT
1 AAAATTACCAAAATACCCCTGA-TTTGT
**
51348725 AAAATTA-TTAAATACCCCT-AGTTTGT
1 AAAATTACCAAAATACCCCTGA-TTTGT
51348751 AAAATTACCAAAATACCCCT-AGTTTGT
1 AAAATTACCAAAATACCCCTGA-TTTGT
*
51348778 AAAATTATCAAAATACCCCT-AGTTTGT
1 AAAATTACCAAAATACCCCTGA-TTTGT
*
51348805 AAAATTACCAAAATACCACTGATTTGT
1 AAAATTACCAAAATACCCCTGATTTGT
* ** *
51348832 GAAATTACTGAAATA-CCCTCGACTTGT
1 AAAATTACCAAAATACCCCT-GATTTGT
**
51348859 AAAATTATTAAAATA-CCCTCGACTTT-T
1 AAAATTACCAAAATACCCCT-GA-TTTGT
*
51348886 AAAATTACCAAAGTACC
1 AAAATTACCAAAATACC
51348903 ATTGATTTAC
Statistics
Matches: 367, Mismatches: 70, Indels: 21
0.80 0.15 0.05
Matches are distributed among these distances:
26 25 0.07
27 338 0.92
28 4 0.01
ACGTcount: A:0.41, C:0.20, G:0.08, T:0.31
Consensus pattern (27 bp):
AAAATTACCAAAATACCCCTGATTTGT
Found at i:51348547 original size:81 final size:81
Alignment explanation
Indices: 51348428--51348902 Score: 533
Period size: 81 Copynumber: 5.9 Consensus size: 81
51348418 TTAGTTCACA
* * * * *
51348428 AAAATTACCAAAATACCCCTGATTTGTAAAATTACTAAAATACCCTTGGTTTATAAAATCACCAA
1 AAAATTACCAAAATACCCTTGGTTTGTAAAATTACTAAAATACCCTTAGTTTGTAAAATTACCAA
51348493 AATACCCCTGGTTTGT
66 AATACCCCTGGTTTGT
* * * *
51348509 AAAATTACTAAAATACCCTTGGTTTATAAAATCACTAAAATACCCCTAGTTTGTAAAATTACCAA
1 AAAATTACCAAAATACCCTTGGTTTGTAAAATTACTAAAATACCCTTAGTTTGTAAAATTACCAA
** **
51348574 AATACCATTGGTTTAC
66 AATACCCCTGGTTTGT
* * * * *
51348590 AAAATTACCAAAATACCCTTGGTTTGTAAAATTACTAAAACACCATTGGTTTATAAAATCACCAA
1 AAAATTACCAAAATACCCTTGGTTTGTAAAATTACTAAAATACCCTTAGTTTGTAAAATTACCAA
*
51348655 AATACCCCTAGTTTGT
66 AATACCCCTGGTTTGT
* ** * * **
51348671 AAAATTACCAAAGTACCCTTGGTTTACAAAATCACCAAAATACCCTTAGTTTGTAAAATTA-TTA
1 AAAATTACCAAAATACCCTTGGTTTGTAAAATTACTAAAATACCCTTAGTTTGTAAAATTACCAA
*
51348735 AATACCCCTAGTTTGT
66 AATACCCCTGGTTTGT
* * *
51348751 AAAATTACCAAAATACCCCTAGTTTGTAAAATTA-TCAAAATACCCCTAGTTTGTAAAATTACCA
1 AAAATTACCAAAATACCCTTGGTTTGTAAAATTACT-AAAATACCCTTAGTTTGTAAAATTACCA
* *
51348815 AAATACCACTGATTTGT
65 AAATACCCCTGGTTTGT
* ** * ** * * *
51348832 GAAATTACTGAAATACCCTCGACTTGTAAAATTATTAAAATACCCTCGACTTT-TAAAATTACCA
1 AAAATTACCAAAATACCCTTGGTTTGTAAAATTACTAAAATACCCT-TAGTTTGTAAAATTACCA
*
51348896 AAGTACC
65 AAATACC
51348903 ATTGATTTAC
Statistics
Matches: 326, Mismatches: 64, Indels: 8
0.82 0.16 0.02
Matches are distributed among these distances:
80 69 0.21
81 252 0.77
82 5 0.02
ACGTcount: A:0.41, C:0.20, G:0.08, T:0.31
Consensus pattern (81 bp):
AAAATTACCAAAATACCCTTGGTTTGTAAAATTACTAAAATACCCTTAGTTTGTAAAATTACCAA
AATACCCCTGGTTTGT
Found at i:51348859 original size:54 final size:55
Alignment explanation
Indices: 51348428--51348921 Score: 544
Period size: 54 Copynumber: 9.2 Consensus size: 55
51348418 TTAGTTCACA
51348428 AAAATTACCAAAATACCCCTGA-TTTGTAAAATTACTAAAATACCCTTGGTTTAT
1 AAAATTACCAAAATACCCCTGAGTTTGTAAAATTACTAAAATACCCTTGGTTTAT
*
51348482 AAAATCACCAAAATACCCCTG-GTTTGTAAAATTACTAAAATACCCTTGGTTTAT
1 AAAATTACCAAAATACCCCTGAGTTTGTAAAATTACTAAAATACCCTTGGTTTAT
* * * * *
51348536 AAAATCACTAAAATACCCCT-AGTTTGTAAAATTACCAAAATACCATTGGTTTAC
1 AAAATTACCAAAATACCCCTGAGTTTGTAAAATTACTAAAATACCCTTGGTTTAT
* * *
51348590 AAAATTACCAAAATACCCTTG-GTTTGTAAAATTACTAAAACACCATTGGTTTAT
1 AAAATTACCAAAATACCCCTGAGTTTGTAAAATTACTAAAATACCCTTGGTTTAT
* * * *
51348644 AAAATCACCAAAATACCCCT-AGTTTGTAAAATTACCAAAGTACCCTTGGTTTAC
1 AAAATTACCAAAATACCCCTGAGTTTGTAAAATTACTAAAATACCCTTGGTTTAT
* * * * * *
51348698 AAAATCACCAAAATA-CCCTTAGTTTGTAAAATTA-TTAAATACCCCTAGTTTGT
1 AAAATTACCAAAATACCCCTGAGTTTGTAAAATTACTAAAATACCCTTGGTTTAT
* * *
51348751 AAAATTACCAAAATACCCCT-AGTTTGTAAAATTA-TCAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATACCCCTGAGTTTGTAAAATTACT-AAAATACCCTTGGTTTAT
* * * * ** *
51348805 AAAATTACCAAAATACCACTGA-TTTGTGAAATTACTGAAATACCCTCGACTTGT
1 AAAATTACCAAAATACCCCTGAGTTTGTAAAATTACTAAAATACCCTTGGTTTAT
** * * * * * *
51348859 AAAATTATTAAAATA-CCCTCGACTTT-TAAAATTACCAAAGTACCATTGATTTAC
1 AAAATTACCAAAATACCCCT-GAGTTTGTAAAATTACTAAAATACCCTTGGTTTAT
*
51348913 AGAATTACC
1 AAAATTACC
51348922 GTTTTACCCT
Statistics
Matches: 379, Mismatches: 50, Indels: 22
0.84 0.11 0.05
Matches are distributed among these distances:
53 48 0.13
54 326 0.86
55 5 0.01
ACGTcount: A:0.40, C:0.20, G:0.08, T:0.31
Consensus pattern (55 bp):
AAAATTACCAAAATACCCCTGAGTTTGTAAAATTACTAAAATACCCTTGGTTTAT
Found at i:51348944 original size:81 final size:81
Alignment explanation
Indices: 51348545--51348957 Score: 184
Period size: 81 Copynumber: 5.1 Consensus size: 81
51348535 TAAAATCACT
* * * * *
51348545 AAAATACCCCTAGTTTGTAAAATTACCAAAATACCATTGGTTTACA-AAATTACCAAAATACCCT
1 AAAATACCCCGACTTTGTAAAATTACCAAAATACCACTGATTT-CAGAAATTACCGAAATACCCT
* ** **
51348609 TGGTTTGTAAAATTA-C
65 CGACTTACAAAATTATC
* ** * * * * *
51348625 TAAAACACCATTG-GTTTATAAAATCACCAAAATACCCCT-AGTTTGTA-AAATTACC-AAAGTA
1 -AAAATACC-CCGACTTTGTAAAATTACCAAAATACCACTGA-TTT-CAGAAATTACCGAAA-TA
* ** * *
51348686 CCCTTGGTTTACAAAATCACC
61 CCCTCGACTTACAAAATTATC
** * ** * * *
51348707 AAAATACCCTTAGTTTGTAAAATTA-TTAAATACCCCT-AGTTTGTA-AAATTACCAAAATACCC
1 AAAATACCCCGACTTTGTAAAATTACCAAAATACCACTGA-TTT-CAGAAATTACCGAAATACCC
* * **
51348769 -CTAGTTTGTAAAATTATC
64 TCGA-CTTACAAAATTATC
* * ** *
51348787 AAAATACCCCTAGTTTGTAAAATTACCAAAATACCACTGATTTGTGAAATTACTGAAATACCCTC
1 AAAATACCCCGACTTTGTAAAATTACCAAAATACCACTGATTTCAGAAATTACCGAAATACCCTC
** *
51348852 GACTTGTAAAATTATT
66 GACTTACAAAATTATC
* * ***
51348868 AAAATACCCTCGACTTT-TAAAATTACCAAAGTACCATTGATTTACAG-AATTACCGTTTTACCC
1 AAAATACCC-CGACTTTGTAAAATTACCAAAATACCACTGATTT-CAGAAATTACCGAAATACCC
* *
51348931 TCGATTTACAAAATTACC
64 TCGACTTACAAAATTATC
*
51348949 GAAATACCC
1 AAAATACCC
51348958 TTGTAGGGTA
Statistics
Matches: 264, Mismatches: 55, Indels: 26
0.77 0.16 0.08
Matches are distributed among these distances:
80 69 0.26
81 185 0.70
82 10 0.04
ACGTcount: A:0.40, C:0.21, G:0.08, T:0.31
Consensus pattern (81 bp):
AAAATACCCCGACTTTGTAAAATTACCAAAATACCACTGATTTCAGAAATTACCGAAATACCCTC
GACTTACAAAATTATC
Found at i:51348977 original size:27 final size:27
Alignment explanation
Indices: 51348945--51349159 Score: 297
Period size: 27 Copynumber: 8.0 Consensus size: 27
51348935 TTTACAAAAT
51348945 TACCGAAATACCCTTGTAGGGTAGAAA
1 TACCGAAATACCCTTGTAGGGTAGAAA
*
51348972 TGCCGAAATACCCTTGTAGGGTAGAAA
1 TACCGAAATACCCTTGTAGGGTAGAAA
*
51348999 TACCGAAATACCCCTGTAGGGTAGAAA
1 TACCGAAATACCCTTGTAGGGTAGAAA
* * *
51349026 TACTGAAATACCCCTGTAGGGTAGAAT
1 TACCGAAATACCCTTGTAGGGTAGAAA
* * *
51349053 TACTGAAATACCCTTATAGGGTAGAAT
1 TACCGAAATACCCTTGTAGGGTAGAAA
*
51349080 TACCAAAATACCCTTGTAGGGTAGAAA
1 TACCGAAATACCCTTGTAGGGTAGAAA
* *
51349107 TACCGAAATACCCCTGTAGGGTAGAAT
1 TACCGAAATACCCTTGTAGGGTAGAAA
* *
51349134 TACTGAAATACTCC-TGTAAGGTAGAA
1 TACCGAAATAC-CCTTGTAGGGTAGAA
51349160 TTACTAAGAT
Statistics
Matches: 171, Mismatches: 16, Indels: 2
0.90 0.08 0.01
Matches are distributed among these distances:
27 169 0.99
28 2 0.01
ACGTcount: A:0.36, C:0.19, G:0.21, T:0.24
Consensus pattern (27 bp):
TACCGAAATACCCTTGTAGGGTAGAAA
Found at i:51349183 original size:54 final size:52
Alignment explanation
Indices: 51348950--51349190 Score: 248
Period size: 54 Copynumber: 4.5 Consensus size: 52
51348940 AAAATTACCG
* * * * * *
51348950 AAATACCCTTGTAGGGTAGAAATGCCGAAATACCCTTGTAGGGTAGAAATACCG
1 AAATACCCTTATAGGGTAGAATTACTGAAATACCC-TGTAGGGTAGAATTA-CT
* * *
51349004 AAATACCCCTGTAGGGTAGAAATACTGAAATACCCCTGTAGGGTAGAATTACT
1 AAATACCCTTATAGGGTAGAATTACTGAAATA-CCCTGTAGGGTAGAATTACT
** * *
51349057 GAAATACCCTTATAGGGTAGAATTACCAAAATACCCTTGTAGGGTAGAAATACCG
1 -AAATACCCTTATAGGGTAGAATTACTGAAATACCC-TGTAGGGTAGAATTA-CT
* * *
51349112 AAATACCCCTGTAGGGTAGAATTACTGAAATACTCCTGTAAGGTAGAATTACT
1 AAATACCCTTATAGGGTAGAATTACTGAAATAC-CCTGTAGGGTAGAATTACT
* *
51349165 AAGATACCCTTATGGGGTAAAATTAC
1 AA-ATACCCTTATAGGGTAGAATTAC
51349191 CATTTTACCC
Statistics
Matches: 158, Mismatches: 23, Indels: 12
0.82 0.12 0.06
Matches are distributed among these distances:
53 7 0.04
54 145 0.92
55 6 0.04
ACGTcount: A:0.37, C:0.18, G:0.21, T:0.25
Consensus pattern (52 bp):
AAATACCCTTATAGGGTAGAATTACTGAAATACCCTGTAGGGTAGAATTACT
Found at i:51349202 original size:81 final size:81
Alignment explanation
Indices: 51348945--51349187 Score: 321
Period size: 81 Copynumber: 3.0 Consensus size: 81
51348935 TTTACAAAAT
* * * * * * *
51348945 TACCGAAATACCCTTGTAGGGTAGAAATGCCGAAATACCCTTGTAGGGTAGAAATACCGAAATAC
1 TACCGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCTTATAGGGTAGAATTACCAAAATAC
* *
51349010 CCCTGTAGGGTAGAAA
66 CCTTATAGGGTAGAAA
*
51349026 TACTGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCTTATAGGGTAGAATTACCAAAATAC
1 TACCGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCTTATAGGGTAGAATTACCAAAATAC
*
51349091 CCTTGTAGGGTAGAAA
66 CCTTATAGGGTAGAAA
* *
51349107 TACCGAAATACCCCTGTAGGGTAGAATTACTGAAATACTCCTGTA-A-GGTAGAATTACTAAGAT
1 TACCGAAATACCCCTGTAGGGTAGAATTACTGAAATAC-CCT-TATAGGGTAGAATTACCAAAAT
*
51349170 ACCCTTATGGGGTA-AAA
64 ACCCTTATAGGGTAGAAA
51349187 T
1 T
51349188 TACCATTTTA
Statistics
Matches: 146, Mismatches: 14, Indels: 5
0.88 0.08 0.03
Matches are distributed among these distances:
80 4 0.03
81 136 0.93
82 4 0.03
83 2 0.01
ACGTcount: A:0.36, C:0.18, G:0.21, T:0.25
Consensus pattern (81 bp):
TACCGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCTTATAGGGTAGAATTACCAAAATAC
CCTTATAGGGTAGAAA
Found at i:51349613 original size:6 final size:6
Alignment explanation
Indices: 51349604--51349744 Score: 72
Period size: 6 Copynumber: 22.8 Consensus size: 6
51349594 TTGCATTCAC
* *
51349604 ATTCTG ATTCTG ATTCTG -TTACCTA ATACTG ATTCTG ATTCTG ATTCT-
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* * * * * * * *
51349652 CTTACCTG ATACTG ATTATG ATTTTG TTATCTA ATTCTA ATTCTG ATTCTA
1 ATT--CTG ATTCTG ATTCTG ATTCTG AT-TCTG ATTCTG ATTCTG ATTCTG
* * * *
51349703 ATTTTG ATTTTG -TTACCTG ATTCTG ATTCTC ATTTTG ATTCT
1 ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCT
51349745 AGTTCTAATA
Statistics
Matches: 102, Mismatches: 23, Indels: 20
0.70 0.16 0.14
Matches are distributed among these distances:
5 6 0.06
6 83 0.81
7 9 0.09
8 4 0.04
ACGTcount: A:0.21, C:0.16, G:0.11, T:0.51
Consensus pattern (6 bp):
ATTCTG
Found at i:51349635 original size:25 final size:25
Alignment explanation
Indices: 51349607--51349701 Score: 82
Period size: 25 Copynumber: 3.6 Consensus size: 25
51349597 CATTCACATT
51349607 CTGATTCTGATTCTGTTACCTAATA
1 CTGATTCTGATTCTGTTACCTAATA
*
51349632 CTGATTCTGATTCTGATTCTCTTACCTGATA
1 CTGATTCTGATTCTG------TTACCTAATA
* * * *
51349663 CTGATTATGATTTTGTTATCTAATT
1 CTGATTCTGATTCTGTTACCTAATA
*
51349688 CTAATTCTGATTCT
1 CTGATTCTGATTCT
51349702 AATTTTGATT
Statistics
Matches: 55, Mismatches: 9, Indels: 12
0.72 0.12 0.16
Matches are distributed among these distances:
25 33 0.60
31 22 0.40
ACGTcount: A:0.22, C:0.18, G:0.12, T:0.48
Consensus pattern (25 bp):
CTGATTCTGATTCTGTTACCTAATA
Found at i:51349639 original size:31 final size:31
Alignment explanation
Indices: 51349604--51349769 Score: 124
Period size: 31 Copynumber: 5.4 Consensus size: 31
51349594 TTGCATTCAC
51349604 ATTCTGATTCTGATTCTGTTACCTAATACTG
1 ATTCTGATTCTGATTCTGTTACCTAATACTG
* *
51349635 ATTCTGATTCTGATTCTCTTACCTGATACTG
1 ATTCTGATTCTGATTCTGTTACCTAATACTG
* * * * *
51349666 ATTATGATTTTGTTATCTAATT--CTAATTCTG
1 ATTCTGATTCTGAT-TCT-GTTACCTAATACTG
* * * * *
51349697 ATTCTAATTTTGATTTTGTTACCTGATTCTG
1 ATTCTGATTCTGATTCTGTTACCTAATACTG
* * *
51349728 ATTCTCATTTTGATTCTAGTT--CTAATAATG
1 ATTCTGATTCTGATTCT-GTTACCTAATACTG
* *
51349758 TTTCTTATTCTG
1 ATTCTGATTCTG
51349770 TAATGGGCTA
Statistics
Matches: 108, Mismatches: 22, Indels: 11
0.77 0.16 0.08
Matches are distributed among these distances:
29 2 0.02
30 17 0.16
31 81 0.75
32 6 0.06
33 2 0.02
ACGTcount: A:0.22, C:0.16, G:0.11, T:0.51
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTGTTACCTAATACTG
Found at i:51349698 original size:37 final size:37
Alignment explanation
Indices: 51349657--51349732 Score: 98
Period size: 37 Copynumber: 2.1 Consensus size: 37
51349647 ATTCTCTTAC
* *
51349657 CTGATACTGATTATGATTTTGTTATCTAATTCTAATT
1 CTGATACTAATTATGATTTTGTTACCTAATTCTAATT
* * * *
51349694 CTGATTCTAATTTTGATTTTGTTACCTGATTCTGATT
1 CTGATACTAATTATGATTTTGTTACCTAATTCTAATT
51349731 CT
1 CT
51349733 CATTTTGATT
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
37 33 1.00
ACGTcount: A:0.22, C:0.13, G:0.12, T:0.53
Consensus pattern (37 bp):
CTGATACTAATTATGATTTTGTTACCTAATTCTAATT
Found at i:51351760 original size:27 final size:27
Alignment explanation
Indices: 51351730--51352042 Score: 430
Period size: 27 Copynumber: 11.6 Consensus size: 27
51351720 TTAGTTTACC
51351730 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * *
51351757 AAATTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
51351784 AAATCACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* **
51351811 AAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
51351838 AAATTACCAAAATACCCCTAGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
51351865 AAATTACCAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
51351892 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
51351919 AAATTACCAAAATA-CCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
51351945 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * *
51351972 AAATCATCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * *
51351999 AAATTACCAAAATACCCTTGATTTGTG
1 AAATTACCAAAATACCCCTGGTTTGTA
**
51352026 AAATTACTGAAATACCC
1 AAATTACCAAAATACCC
51352043 TCGACCTGTA
Statistics
Matches: 256, Mismatches: 29, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
26 25 0.10
27 231 0.90
ACGTcount: A:0.40, C:0.21, G:0.08, T:0.30
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGGTTTGTA
Found at i:51352043 original size:27 final size:27
Alignment explanation
Indices: 51351730--51352114 Score: 382
Period size: 27 Copynumber: 14.3 Consensus size: 27
51351720 TTAGTTTACC
* *
51351730 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCTTGATTTGTA
* * *
51351757 AAATTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCTTGATTTGTA
* * *
51351784 AAATCACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCTTGATTTGTA
* **
51351811 AAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCTTGATTTGTA
* *
51351838 AAATTACCAAAATACCCCT-AGTTTATA
1 AAATTACCAAAATACCCTTGA-TTTGTA
* *
51351865 AAATTACCAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCTTGATTTGTA
* *
51351892 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCTTGATTTGTA
*
51351919 AAATTACCAAAATACCCTAG-TTTGTA
1 AAATTACCAAAATACCCTTGATTTGTA
*
51351945 AAATTACCAAAATACCCCT-AGTTTGTA
1 AAATTACCAAAATACCCTTGA-TTTGTA
* * *
51351972 AAATCATCAAAATACCCCT-AGTTTGTA
1 AAATTACCAAAATACCCTTGA-TTTGTA
*
51351999 AAATTACCAAAATACCCTTGATTTGTG
1 AAATTACCAAAATACCCTTGATTTGTA
** * **
51352026 AAATTACTGAAATACCCTCGACCTGTA
1 AAATTACCAAAATACCCTTGATTTGTA
*** * *
51352053 AAATTATTGAAGTACCCTTGACTTGTA
1 AAATTACCAAAATACCCTTGATTTGTA
* * *
51352080 AAATTACCAAAGTACCATTGATTTATA
1 AAATTACCAAAATACCCTTGATTTGTA
*
51352107 GAATTACC
1 AAATTACC
51352115 GTTTTACCCT
Statistics
Matches: 308, Mismatches: 45, Indels: 10
0.85 0.12 0.03
Matches are distributed among these distances:
26 23 0.07
27 284 0.92
28 1 0.00
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.31
Consensus pattern (27 bp):
AAATTACCAAAATACCCTTGATTTGTA
Found at i:51352053 original size:54 final size:54
Alignment explanation
Indices: 51351730--51352114 Score: 434
Period size: 54 Copynumber: 7.1 Consensus size: 54
51351720 TTAGTTTACC
* *
51351730 AAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCCTGATTTGTAAAATTACCAAAATACCCTTGGTTTATA
* * *
51351784 AAATCACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCCTGATTTGTAAAATTACCAAAATACCCTTGGTTTATA
*
51351838 AAATTACCAAAATACCCCT-AGTTTATAAAATTACCAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCCTGA-TTTGTAAAATTACCAAAATACCCTTGGTTTATA
* * *
51351892 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCC-TAGTTTGTA
1 AAATTACCAAAATACCCCTGATTTGTAAAATTACCAAAATACCCTTGGTTTATA
* * * * *
51351945 AAATTACCAAAATACCCCT-AGTTTGTAAAATCATCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGA-TTTGTAAAATTACCAAAATACCCTTGGTTTATA
* * ** * *** *
51351999 AAATTACCAAAATACCCTTGATTTGTGAAATTACTGAAATACCCTCGACCTGTA
1 AAATTACCAAAATACCCCTGATTTGTAAAATTACCAAAATACCCTTGGTTTATA
*** * * * * * *
51352053 AAATTATTGAAGTACCCTTGACTTGTAAAATTACCAAAGTACCATTGATTTATA
1 AAATTACCAAAATACCCCTGATTTGTAAAATTACCAAAATACCCTTGGTTTATA
*
51352107 GAATTACC
1 AAATTACC
51352115 GTTTTACCCT
Statistics
Matches: 283, Mismatches: 43, Indels: 10
0.84 0.13 0.03
Matches are distributed among these distances:
53 47 0.17
54 235 0.83
55 1 0.00
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.31
Consensus pattern (54 bp):
AAATTACCAAAATACCCCTGATTTGTAAAATTACCAAAATACCCTTGGTTTATA
Found at i:51352173 original size:27 final size:27
Alignment explanation
Indices: 51352141--51352379 Score: 286
Period size: 27 Copynumber: 8.9 Consensus size: 27
51352131 ACAAAATTAT
*
51352141 CGAAATACCCTTGTAGGGTAGAAATGC
1 CGAAATACCCTTGTAGGGTAGAAATAC
*
51352168 CAAAATACCCTTGTAGGGTAGAAATAC
1 CGAAATACCCTTGTAGGGTAGAAATAC
*
51352195 CGAAATACCCCTGTAGGGTAGAAATAC
1 CGAAATACCCTTGTAGGGTAGAAATAC
* * *
51352222 TGAAATACCCCTGTAGGGTAGAATTAC
1 CGAAATACCCTTGTAGGGTAGAAATAC
** *
51352249 TAAAATACCCTTGTAGGGTAGAATTAC
1 CGAAATACCCTTGTAGGGTAGAAATAC
*
51352276 CGAAATACCCTTGTA-GGTAGAATTAC
1 CGAAATACCCTTGTAGGGTAGAAATAC
* *
51352302 CGAAATACCCCTGTAGGGTAGAATTAC
1 CGAAATACCCTTGTAGGGTAGAAATAC
* * * *
51352329 TGAAATATTCC-TGTAAGGTAGAATTAC
1 CGAAATA-CCCTTGTAGGGTAGAAATAC
* *
51352356 CGAGATACCCTTGTGGGGTA-AAAT
1 CGAAATACCCTTGTAGGGTAGAAAT
51352380 TACCATTTTA
Statistics
Matches: 189, Mismatches: 20, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
26 30 0.16
27 157 0.83
28 2 0.01
ACGTcount: A:0.35, C:0.18, G:0.22, T:0.25
Consensus pattern (27 bp):
CGAAATACCCTTGTAGGGTAGAAATAC
Found at i:51352190 original size:81 final size:81
Alignment explanation
Indices: 51352142--51352378 Score: 289
Period size: 80 Copynumber: 2.9 Consensus size: 81
51352132 CAAAATTATC
* * *
51352142 GAAATACCCTTGTAGGGTAGAAATGCCAAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCT
1 GAAATACCCCTGTAGGGTAGAAATACCAAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCT
*
51352207 GTAGGGTAGAAATACT
66 GTAGGGTAAAAATACT
* * *
51352223 GAAATACCCCTGTAGGGTAGAATTACTAAAATACCCTTGTAGGGTAGAATTACCGAAATACCCTT
1 GAAATACCCCTGTAGGGTAGAAATACCAAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCT
* * *
51352288 GTA-GGTAGAATTACC
66 GTAGGGTAAAAATACT
* ** * * * *
51352303 GAAATACCCCTGTAGGGTAGAATTACTGAAATATTCC-TGTAAGGTAGAATTACCGAGATACCCT
1 GAAATACCCCTGTAGGGTAGAAATACCAAAATA-CCCTTGTAGGGTAGAATTACCGAAATACCCC
*
51352367 TGTGGGGTAAAA
65 TGTAGGGTAAAA
51352379 TTACCATTTT
Statistics
Matches: 140, Mismatches: 14, Indels: 4
0.89 0.09 0.03
Matches are distributed among these distances:
80 70 0.50
81 70 0.50
ACGTcount: A:0.35, C:0.18, G:0.22, T:0.25
Consensus pattern (81 bp):
GAAATACCCCTGTAGGGTAGAAATACCAAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCT
GTAGGGTAAAAATACT
Found at i:51352342 original size:107 final size:108
Alignment explanation
Indices: 51352143--51352384 Score: 360
Period size: 107 Copynumber: 2.2 Consensus size: 108
51352133 AAAATTATCG
* *
51352143 AAATACCCTTGTAGGGTAGAAATGCCAAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTG
1 AAATACCCTTGTAGGGTAGAATTACCAAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTG
* *
51352208 TAGGGTAGAAATACTGAAATACCCCTGTAGGGTAGAATTACTA
66 TAGGGTAGAAATACTGAAATACCCCTGTAAGGTAGAATTACCA
* *
51352251 AAATACCCTTGTAGGGTAGAATTACCGAAATACCCTTGTA-GGTAGAATTACCGAAATACCCCTG
1 AAATACCCTTGTAGGGTAGAATTACCAAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTG
* ** *
51352315 TAGGGTAGAATTACTGAAATATTCCTGTAAGGTAGAATTACCG
66 TAGGGTAGAAATACTGAAATACCCCTGTAAGGTAGAATTACCA
* * *
51352358 AGATACCCTTGTGGGGTAAAATTACCA
1 AAATACCCTTGTAGGGTAGAATTACCA
51352385 TTTTACCCCT
Statistics
Matches: 120, Mismatches: 14, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
107 83 0.69
108 37 0.31
ACGTcount: A:0.36, C:0.18, G:0.21, T:0.25
Consensus pattern (108 bp):
AAATACCCTTGTAGGGTAGAATTACCAAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTG
TAGGGTAGAAATACTGAAATACCCCTGTAAGGTAGAATTACCA
Found at i:51352807 original size:6 final size:6
Alignment explanation
Indices: 51352798--51353015 Score: 144
Period size: 6 Copynumber: 35.3 Consensus size: 6
51352788 TTACATTCAC
* *
51352798 ATTCTG ATTCTG ATTCTG -TTACCTG ATACTG ATTCTG ATTCTG TTATCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG AT-TCTG
* * * *
51352848 ATACTG ATTCTG ATTTTG -TTACCTA ATTCTG ATTCT- AGCTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG A-TTCTG ATTCTG
* *
51352897 ATTCTG -TTACCTG ATACTG ATTCTG ATTCTG -TTACCTA ATTCTG ATTCTG
1 ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG
* * * * *
51352947 ATTCTG ATTTTG ATTCTG -TCACCTG ATTTTG ATTCTG ATTCTA ATTCTC
1 ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG
*
51352996 ATTTTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG A-TTCTG AT
51353016 AATGTTTCTT
Statistics
Matches: 165, Mismatches: 27, Indels: 40
0.71 0.12 0.17
Matches are distributed among these distances:
5 11 0.07
6 128 0.78
7 19 0.12
8 7 0.04
ACGTcount: A:0.19, C:0.18, G:0.14, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:51352829 original size:19 final size:18
Alignment explanation
Indices: 51352801--51352983 Score: 103
Period size: 19 Copynumber: 9.8 Consensus size: 18
51352791 CATTCACATT
51352801 CTGATTCTGATTCTGTTA
1 CTGATTCTGATTCTGTTA
*
51352819 CCTGATACTGATTCTGATT-
1 -CTGATTCTGATTCTG-TTA
*
51352838 CTG--T-T-A-TCTGATA
1 CTGATTCTGATTCTGTTA
*
51352851 CTGATTCTGATTTTGTTA
1 CTGATTCTGATTCTGTTA
*
51352869 CCTAATTCTGATTCTAGCTCTGA
1 -CTGATTCTGATTCT-G-T-T-A
*
51352892 TTCTGATTCTG-TTACCTGATA
1 --CTGATTCTGATT--CTGTTA
51352913 CTGATTCTGATTCTGTTA
1 CTGATTCTGATTCTGTTA
*
51352931 CCTAATTCTGATTCTGATT-
1 -CTGATTCTGATTCTG-TTA
* *
51352950 CTGATTTTGATTCTGTCA
1 CTGATTCTGATTCTGTTA
*
51352968 CCTGATTTTGATTCTG
1 -CTGATTCTGATTCTG
51352984 ATTCTAATTC
Statistics
Matches: 129, Mismatches: 15, Indels: 40
0.70 0.08 0.22
Matches are distributed among these distances:
12 1 0.01
13 7 0.05
14 1 0.01
15 2 0.02
16 1 0.01
17 2 0.02
18 26 0.20
19 64 0.50
20 7 0.05
21 2 0.02
22 2 0.02
23 3 0.02
24 9 0.07
25 2 0.02
ACGTcount: A:0.19, C:0.19, G:0.15, T:0.48
Consensus pattern (18 bp):
CTGATTCTGATTCTGTTA
Found at i:51352833 original size:25 final size:25
Alignment explanation
Indices: 51352801--51352883 Score: 130
Period size: 25 Copynumber: 3.3 Consensus size: 25
51352791 CATTCACATT
51352801 CTGATTCTGATTCTGTTACCTGATA
1 CTGATTCTGATTCTGTTACCTGATA
*
51352826 CTGATTCTGATTCTGTTATCTGATA
1 CTGATTCTGATTCTGTTACCTGATA
* * *
51352851 CTGATTCTGATTTTGTTACCTAATT
1 CTGATTCTGATTCTGTTACCTGATA
51352876 CTGATTCT
1 CTGATTCT
51352884 AGCTCTGATT
Statistics
Matches: 53, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 53 1.00
ACGTcount: A:0.19, C:0.18, G:0.14, T:0.48
Consensus pattern (25 bp):
CTGATTCTGATTCTGTTACCTGATA
Found at i:51352918 original size:25 final size:25
Alignment explanation
Indices: 51352888--51352952 Score: 112
Period size: 25 Copynumber: 2.6 Consensus size: 25
51352878 GATTCTAGCT
*
51352888 CTGATTCTGATTCTGTTACCTGATA
1 CTGATTCTGATTCTGTTACCTAATA
*
51352913 CTGATTCTGATTCTGTTACCTAATT
1 CTGATTCTGATTCTGTTACCTAATA
51352938 CTGATTCTGATTCTG
1 CTGATTCTGATTCTG
51352953 ATTTTGATTC
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
25 38 1.00
ACGTcount: A:0.18, C:0.20, G:0.15, T:0.46
Consensus pattern (25 bp):
CTGATTCTGATTCTGTTACCTAATA
Found at i:51352923 original size:62 final size:62
Alignment explanation
Indices: 51352826--51352988 Score: 247
Period size: 62 Copynumber: 2.6 Consensus size: 62
51352816 TTACCTGATA
* *
51352826 CTGATTCTGATTCTGTTATCTGATACTGATTCTGATTTTGTTACCTAATTCTGATTCT-AGCT
1 CTGATTCTGATTCTGTTACCTGATACTGATTCTGATTCTGTTACCTAATTCTGATTCTGA-CT
*
51352888 CTGATTCTGATTCTGTTACCTGATACTGATTCTGATTCTGTTACCTAATTCTGATTCTGATT
1 CTGATTCTGATTCTGTTACCTGATACTGATTCTGATTCTGTTACCTAATTCTGATTCTGACT
* * **
51352950 CTGATTTTGATTCTGTCACCTGATTTTGATTCTGATTCT
1 CTGATTCTGATTCTGTTACCTGATACTGATTCTGATTCT
51352989 AATTCTCATT
Statistics
Matches: 93, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
62 92 0.99
63 1 0.01
ACGTcount: A:0.18, C:0.18, G:0.15, T:0.48
Consensus pattern (62 bp):
CTGATTCTGATTCTGTTACCTGATACTGATTCTGATTCTGTTACCTAATTCTGATTCTGACT
Found at i:51355123 original size:20 final size:20
Alignment explanation
Indices: 51355098--51355144 Score: 85
Period size: 20 Copynumber: 2.4 Consensus size: 20
51355088 TGTGGGTAGG
51355098 CCCGTGTGACTTGGGACACA
1 CCCGTGTGACTTGGGACACA
*
51355118 CCCGTGTGACTTGGGACACG
1 CCCGTGTGACTTGGGACACA
51355138 CCCGTGT
1 CCCGTGT
51355145 CCTCATCCCG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.15, C:0.32, G:0.32, T:0.21
Consensus pattern (20 bp):
CCCGTGTGACTTGGGACACA
Found at i:51356724 original size:33 final size:33
Alignment explanation
Indices: 51356684--51356756 Score: 137
Period size: 33 Copynumber: 2.2 Consensus size: 33
51356674 TTCGTCTAAC
51356684 TCGTTCACAATGTCATTCTCATTGACCATAATA
1 TCGTTCACAATGTCATTCTCATTGACCATAATA
*
51356717 TTGTTCACAATGTCATTCTCATTGACCATAATA
1 TCGTTCACAATGTCATTCTCATTGACCATAATA
51356750 TCGTTCA
1 TCGTTCA
51356757 TACGCTCATT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 38 1.00
ACGTcount: A:0.29, C:0.23, G:0.10, T:0.38
Consensus pattern (33 bp):
TCGTTCACAATGTCATTCTCATTGACCATAATA
Found at i:51359043 original size:48 final size:47
Alignment explanation
Indices: 51358988--51359166 Score: 154
Period size: 48 Copynumber: 3.9 Consensus size: 47
51358978 CCTATAATAA
*
51358988 GATGCCAACGCCATATCCCGGATATGGTCTTACATGGGATCACCACTC
1 GATGCCAACGCCATATCCCAGATATGGTCTTACATGGGATCACCA-TC
* * * * * *
51359036 GATGCCAATGACGTGTCCC-GAACATGGTCTTACATGGGATC-TCAT-
1 GATGCCAACGCCATATCCCAG-ATATGGTCTTACATGGGATCACCATC
** * *
51359081 -AT--CAACGCCATATCCCAGATATGGTCTTACATGATAACACATATC
1 GATGCCAACGCCATATCCCAGATATGGTCTTACATGGGATCAC-CATC
* * * *
51359126 GATGCCAATGCCATATCCCAGATATGATCTTATAAGGGATC
1 GATGCCAACGCCATATCCCAGATATGGTCTTACATGGGATC
51359167 TCATTAACTT
Statistics
Matches: 100, Mismatches: 23, Indels: 16
0.72 0.17 0.12
Matches are distributed among these distances:
42 26 0.26
43 1 0.01
44 4 0.04
46 3 0.03
47 3 0.03
48 63 0.63
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.26
Consensus pattern (47 bp):
GATGCCAACGCCATATCCCAGATATGGTCTTACATGGGATCACCATC
Found at i:51359157 original size:90 final size:89
Alignment explanation
Indices: 51358993--51359170 Score: 216
Period size: 90 Copynumber: 2.0 Consensus size: 89
51358983 AATAAGATGC
* * * * *
51358993 CAACGCCATATCCCGGATATGGTCTTACATGGGATCACCACTCGATGCCAATGACGTGTCCCGAA
1 CAACGCCATATCCCAGATATGGTCTTACAT-GGATAACCAATCGATGCCAATGACATATCCCGAA
* *
51359058 CATGGTCTTACATGGGATCTCATAT
65 CATGATCTTACAAGGGATCTCATAT
*
51359083 CAACGCCATATCCCAGATATGGTCTTACAT-GATAACACATATCGATGCCAATGCCATATCCC-A
1 CAACGCCATATCCCAGATATGGTCTTACATGGATAAC-CA-ATCGATGCCAATGACATATCCCGA
* *
51359146 GATATGATCTTATAAGGGATCTCAT
64 -ACATGATCTTACAAGGGATCTCAT
51359171 TAACTTGAAT
Statistics
Matches: 75, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
88 5 0.07
89 3 0.04
90 67 0.89
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.26
Consensus pattern (89 bp):
CAACGCCATATCCCAGATATGGTCTTACATGGATAACCAATCGATGCCAATGACATATCCCGAAC
ATGATCTTACAAGGGATCTCATAT
Found at i:51366761 original size:90 final size:90
Alignment explanation
Indices: 51366596--51366761 Score: 190
Period size: 90 Copynumber: 1.8 Consensus size: 90
51366586 TGCCAATTCC
* * * * * * * *
51366596 ATATCCTAGATATGGTCTTACATGGGATCACCATTCGATGCCAATGTCGTGTCCCAGGCGTGGTC
1 ATATCCCAGATATGGTCTTACATGGGAACACCATTCGATGCCAATGCCATATCCCAGACATGGTA
*
51366661 TTACATGGGATCTCATATCAATGCA
66 TTACACGGGATCTCATATCAATGCA
* ** *
51366686 ATATCCCAGATATGGTCTTACATGGTAACACCTATT-GATGCTGATGCCATATCCCAGATATGGT
1 ATATCCCAGATATGGTCTTACATGGGAACACC-ATTCGATGCCAATGCCATATCCCAGACATGGT
*
51366750 ATTATACGGGAT
65 ATTACACGGGAT
51366762 GTTATTAACC
Statistics
Matches: 61, Mismatches: 14, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
90 58 0.95
91 3 0.05
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.31
Consensus pattern (90 bp):
ATATCCCAGATATGGTCTTACATGGGAACACCATTCGATGCCAATGCCATATCCCAGACATGGTA
TTACACGGGATCTCATATCAATGCA
Found at i:51368328 original size:27 final size:28
Alignment explanation
Indices: 51368298--51368367 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
51368288 ATAATAAGTC
*
51368298 CGCACACTTAGTGCTATATAATC-AGCT
1 CGCACACTTAGTGCTATATAATCAAACT
* *
51368325 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATATAATCAAACT
51368353 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
51368368 GTACAAATTT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 22 0.58
28 16 0.42
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:51376227 original size:27 final size:28
Alignment explanation
Indices: 51376197--51376266 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
51376187 ATAATAAGTC
*
51376197 CGCACACTTAGTGCTATATAATC-AGCT
1 CGCACACTTAGTGCTATATAATCAAACT
* *
51376224 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATATAATCAAACT
51376252 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
51376267 GTACAAATTT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 22 0.58
28 16 0.42
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:51385258 original size:20 final size:20
Alignment explanation
Indices: 51385225--51385278 Score: 67
Period size: 19 Copynumber: 2.8 Consensus size: 20
51385215 GAAAGAATAA
51385225 AGAAATGAAAAAAAA-AAAG
1 AGAAATGAAAAAAAACAAAG
*
51385244 AGAATATGAAGAAAAACAAAG
1 AGAA-ATGAAAAAAAACAAAG
*
51385265 A-AAAGGAAAAAAAA
1 AGAAATGAAAAAAAA
51385279 GTGTTCATTC
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
19 13 0.43
20 12 0.40
21 5 0.17
ACGTcount: A:0.76, C:0.02, G:0.17, T:0.06
Consensus pattern (20 bp):
AGAAATGAAAAAAAACAAAG
Found at i:51385266 original size:19 final size:19
Alignment explanation
Indices: 51385209--51385266 Score: 55
Period size: 19 Copynumber: 3.0 Consensus size: 19
51385199 GTTAGTGGAT
* *
51385209 TATGTAGAAAGAATAAAGAA
1 TATGAAGAAA-AAAAAAGAA
*
51385229 -ATGAAAAAAAAAAAGAGAA
1 TATGAAGAAAAAAAA-AGAA
*
51385248 TATGAAGAAAAACAAAGAA
1 TATGAAGAAAAAAAAAGAA
51385267 AAGGAAAAAA
Statistics
Matches: 31, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
18 4 0.13
19 15 0.48
20 12 0.39
ACGTcount: A:0.69, C:0.02, G:0.17, T:0.12
Consensus pattern (19 bp):
TATGAAGAAAAAAAAAGAA
Found at i:51385277 original size:19 final size:20
Alignment explanation
Indices: 51385231--51385278 Score: 55
Period size: 21 Copynumber: 2.5 Consensus size: 20
51385221 ATAAAGAAAT
*
51385231 GAAAAAAAAAAAGAGAATAT
1 GAAAAAAAAAAAGAGAATAG
*
51385251 GAAGAAAAACAAAGA-AA-AG
1 GAA-AAAAAAAAAGAGAATAG
51385270 GAAAAAAAA
1 GAAAAAAAA
51385279 GTGTTCATTC
Statistics
Matches: 24, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
18 5 0.21
19 4 0.17
20 5 0.21
21 10 0.42
ACGTcount: A:0.77, C:0.02, G:0.17, T:0.04
Consensus pattern (20 bp):
GAAAAAAAAAAAGAGAATAG
Found at i:51386470 original size:29 final size:29
Alignment explanation
Indices: 51386437--51386501 Score: 112
Period size: 29 Copynumber: 2.2 Consensus size: 29
51386427 GTGACGAGAT
*
51386437 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAAAATA
51386466 TGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCATGCTGGAAAAATA
*
51386495 CGGCACT
1 TGGCACT
51386502 GGGTGTGCGA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 34 1.00
ACGTcount: A:0.31, C:0.17, G:0.28, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAAAATA
Found at i:51388792 original size:27 final size:28
Alignment explanation
Indices: 51388736--51388805 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
51388726 AAACTTGTAC
51388736 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
51388764 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
51388791 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
51388806 GACTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:51388816 original size:27 final size:27
Alignment explanation
Indices: 51388736--51388817 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
51388726 AAACTTGTAC
* *
51388736 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
51388764 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
51388791 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
51388818 GCTTTTGAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
26 1 0.02
27 30 0.61
28 18 0.37
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:51396034 original size:27 final size:28
Alignment explanation
Indices: 51395966--51396035 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
51395956 AAACTTGTAC
51395966 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
* *
51395994 AGCACTAAGAGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
51396021 AGCACTATGTGTGCG
1 AGCACTAAGTGTGCG
51396036 GACTCACTAT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 22 0.58
28 16 0.42
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:51397957 original size:17 final size:18
Alignment explanation
Indices: 51397930--51397963 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
51397920 AGTTAAATAT
51397930 ATGCATATTAAATTATTA
1 ATGCATATTAAATTATTA
*
51397948 ATGC-TATTAATTTATT
1 ATGCATATTAAATTATT
51397964 TAAAAAAATA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.38, C:0.06, G:0.06, T:0.50
Consensus pattern (18 bp):
ATGCATATTAAATTATTA
Found at i:51398036 original size:24 final size:21
Alignment explanation
Indices: 51397998--51398056 Score: 55
Period size: 23 Copynumber: 2.7 Consensus size: 21
51397988 AACTAATCCT
** *
51397998 AATTATATGCTAAATTGATAAA
1 AATTATATATTAAATAGAT-AA
*
51398020 AATTAATATAATTAAATAGATAT
1 AATT-ATAT-ATTAAATAGATAA
51398043 AATTATATATTAAA
1 AATTATATATTAAA
51398057 GATTATCAGC
Statistics
Matches: 31, Mismatches: 4, Indels: 5
0.77 0.10 0.12
Matches are distributed among these distances:
21 6 0.19
22 8 0.26
23 9 0.29
24 8 0.26
ACGTcount: A:0.54, C:0.02, G:0.05, T:0.39
Consensus pattern (21 bp):
AATTATATATTAAATAGATAA
Found at i:51406195 original size:50 final size:50
Alignment explanation
Indices: 51406120--51406404 Score: 332
Period size: 48 Copynumber: 5.8 Consensus size: 50
51406110 GTAAGACGCT
* * *
51406120 GATGCCATGTCCCAAATATGGTCTTAGACTGGCTTTCATATATCGGTGTC
1 GATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATATATCGGTGTC
* *
51406170 GATGCCATGTCCCAGACATGGTCTTACAATGGCTCTCATATATC-G-GTC
1 GATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATATATCGGTGTC
* *
51406218 GATGCCATGTCCCAGACATGGTCTTCCACTGGCTCTCATATATCGGTGTC
1 GATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATATATCGGTGTC
* * * * *
51406268 GATGCCATGTCCCAAATATGGTCTTACATTAGCTCTCAT-TA-CGATGCCC
1 GATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATATATCGGTG-TC
* * * * *
51406317 G-TGCCATGTTCCAAACATAGTCTTACACTAGCTCTCAT-TA-CGATGCC
1 GATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATATATCGGTGTC
* * *
51406364 GGTGCCATGTTCCAAACATGGTCTTACACTGGCTCACATAT
1 GATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATAT
51406405 TACCCTAGTA
Statistics
Matches: 209, Mismatches: 21, Indels: 11
0.87 0.09 0.05
Matches are distributed among these distances:
47 3 0.01
48 123 0.59
49 7 0.03
50 76 0.36
ACGTcount: A:0.23, C:0.27, G:0.19, T:0.31
Consensus pattern (50 bp):
GATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATATATCGGTGTC
Found at i:51406289 original size:98 final size:99
Alignment explanation
Indices: 51406120--51406404 Score: 339
Period size: 98 Copynumber: 2.9 Consensus size: 99
51406110 GTAAGACGCT
* * * *
51406120 GATGCCATGTCCCAAATATGGTCTTAGACTGGCTTTCATATATCGGTGTCGATGCCATGTCCCAG
1 GATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATATATCGGTGTCGATGCCATGTCCCAA
*
51406185 ACATGGTCTTACAATGGCTCTCATATATCG-G-TC
66 ACATGGTCTTACAATGGCTCTCATATA-CGAGCCC
* *
51406218 GATGCCATGTCCCAGACATGGTCTTCCACTGGCTCTCATATATCGGTGTCGATGCCATGTCCCAA
1 GATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATATATCGGTGTCGATGCCATGTCCCAA
* * *
51406283 ATATGGTCTTACATTAGCTCTCAT-TACGATGCCC
66 ACATGGTCTTACAATGGCTCTCATATACGA-GCCC
* * * * * * *
51406317 G-TGCCATGTTCCAAACATAGTCTTACACTAGCTCTCAT-TA-CGATGCCGGTGCCATGTTCCAA
1 GATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATATATCGGTGTCGATGCCATGTCCCAA
* *
51406379 ACATGGTCTTACACTGGCTCACATAT
66 ACATGGTCTTACAATGGCTCTCATAT
51406405 TACCCTAGTA
Statistics
Matches: 160, Mismatches: 23, Indels: 9
0.83 0.12 0.05
Matches are distributed among these distances:
96 40 0.25
97 5 0.03
98 113 0.71
99 2 0.01
ACGTcount: A:0.23, C:0.27, G:0.19, T:0.31
Consensus pattern (99 bp):
GATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATATATCGGTGTCGATGCCATGTCCCAA
ACATGGTCTTACAATGGCTCTCATATACGAGCCC
Found at i:51409400 original size:40 final size:40
Alignment explanation
Indices: 51409310--51409513 Score: 229
Period size: 40 Copynumber: 5.1 Consensus size: 40
51409300 TCGAATGATG
* *
51409310 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATA
* *
51409350 TCAGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-A
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA
* *
51409389 TTCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
* *
51409429 TCCGAGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
* * **
51409469 ACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATA
51409509 TCCGG
1 TCCGG
51409514 TTAAATTCCG
Statistics
Matches: 139, Mismatches: 18, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
39 36 0.26
40 95 0.68
41 8 0.06
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
Found at i:51409517 original size:79 final size:79
Alignment explanation
Indices: 51409363--51409527 Score: 210
Period size: 79 Copynumber: 2.1 Consensus size: 79
51409353 GGACTAAGAT
* **
51409363 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
*
51409428 ATCCGAGTTAAGTC
66 ATCCGAGTTAAATC
* *
51409442 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
* *
51409505 TATATCCG-GTTAAATT
63 TAAATCCGAGTTAAATC
51409521 CCGAAGG
1 CCGAAGG
51409528 TACGTGACTC
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.64
80 25 0.33
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGAGTTAAATC
Found at i:51411337 original size:40 final size:39
Alignment explanation
Indices: 51411300--51411483 Score: 167
Period size: 40 Copynumber: 4.6 Consensus size: 39
51411290 GCTACTCGTT
*
51411300 CAAATGCCTTCAGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTC-GGACTTAGCCCGGTTATAGTAACTCGCA
* *
51411340 CCAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
1 CAAATGCCTTC-GGACTTAGCCCGG-TTATAGTAACTCGCA
* * * *
51411380 CCAAGGCCTTCGGGCTTAGCCCGG-AATTAGTAACTCGCA
1 CAAATGCCTTCGGACTTAGCCCGGTTA-TAGTAACTCGCA
* * * * * *
51411419 CAAATGCCTTCGGATCTTAGTCCTGATATAGTCACTTAGCG
1 CAAATGCCTTCGGA-CTTAGCCCGGTTATAGTAAC-TCGCA
51411460 CAAA-GCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTC-GGACTTAGCCCGG
51411484 ACATCATTCG
Statistics
Matches: 118, Mismatches: 19, Indels: 14
0.78 0.13 0.09
Matches are distributed among these distances:
39 34 0.29
40 71 0.60
41 13 0.11
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.24
Consensus pattern (39 bp):
CAAATGCCTTCGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:51411468 original size:79 final size:80
Alignment explanation
Indices: 51411300--51411484 Score: 198
Period size: 79 Copynumber: 2.3 Consensus size: 80
51411290 GCTACTCGTT
* * * *
51411300 CAAATGCCTTCAGGACATAGCCCGG-TTATAGTAACTCGCACCAATGCCTTCGGGACTTAACCCG
1 CAAA-GCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
* *
51411364 GATTTAGTAACTCGCAC
64 GATATAGTAACTAGCAC
* ** *
51411381 CAAGGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCCTG
1 CAAAGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
* *
51411444 ATATAGTCACTTAGC-G
65 ATATAGTAAC-TAGCAC
51411460 CAAAGCCTTCGGGACTTAGCCCGGA
1 CAAAGCCTTCGGGACTTAGCCCGGA
51411485 CATCATTCGA
Statistics
Matches: 87, Mismatches: 13, Indels: 9
0.80 0.12 0.08
Matches are distributed among these distances:
78 3 0.03
79 58 0.67
80 23 0.26
81 3 0.03
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.24
Consensus pattern (80 bp):
CAAAGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGA
TATAGTAACTAGCAC
Found at i:51420938 original size:39 final size:39
Alignment explanation
Indices: 51420840--51421022 Score: 183
Period size: 40 Copynumber: 4.6 Consensus size: 39
51420830 GAATGATGTC
* * *
51420840 CGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTA-ATT
*
51420880 CGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAATT
1 CGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAATT
* *
51420919 CTGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAATA
1 C-GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AATT
* * **
51420959 CGGGTTAAGTCCCGAAGGCATTTGTGCTAGTTACTATAAC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-ATT
* *
51420999 CGGGCTATGTCCCAAAGGCATTTG
1 CGGGCTAAGTCCCGAAGGCATTTG
51421023 AACGAGTAGC
Statistics
Matches: 121, Mismatches: 15, Indels: 14
0.81 0.10 0.09
Matches are distributed among these distances:
39 34 0.28
40 79 0.65
41 8 0.07
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (39 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATT
Found at i:51421004 original size:79 final size:81
Alignment explanation
Indices: 51420839--51421020 Score: 203
Period size: 79 Copynumber: 2.3 Consensus size: 81
51420829 CGAATGATGT
* * *
51420839 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATACGGACTAAGATCCGAAGGCATTT
*
51420903 GTGCGAGTTACTAATT
66 GTGCGAGTTACTAATA
* * * **
51420919 CTGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATACGGGTTAAG-TCCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATACGGACTAAGAT-CCGAAGGCATT
*
51420981 TGTGCTAGTTACT-ATAA
65 TGTGCGAGTTACTAAT-A
* *
51420998 CCGGGCTATGTCCCAAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATT
51421021 TGAACGAGTA
Statistics
Matches: 85, Mismatches: 13, Indels: 8
0.80 0.12 0.08
Matches are distributed among these distances:
78 3 0.04
79 56 0.66
80 26 0.31
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (81 bp):
CCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATACGGACTAAGATCCGAAGGCATTT
GTGCGAGTTACTAATA
Found at i:51421044 original size:79 final size:77
Alignment explanation
Indices: 51420872--51421055 Score: 174
Period size: 79 Copynumber: 2.3 Consensus size: 77
51420862 GTGCTAAGTG
* * * *
51420872 ACTATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAATTCTGGGCTAAGCCCGAAGG
1 ACTATATCCGG-TTAAG-TCCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCAAAGG
**
51420937 CATTGGTGCGAGTT
64 CATTGGAACGAGTT
* * * *
51420951 ACTAAATACGGGTTAAGTCCCGAAGGCATTTGTGCTAGTTACT-ATAACCGGGCTATGTCCCAAA
1 ACTATAT-CCGGTTAAGT-CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCAAA
*
51421015 GGCATTTGAACGAG-T
62 GGCATTGGAACGAGTT
*
51421030 AGCTATATCCGGTTAAATTCCGAAGG
1 A-CTATATCCGGTT-AAGTCCGAAGG
51421056 TACGTGATTC
Statistics
Matches: 85, Mismatches: 14, Indels: 12
0.77 0.13 0.11
Matches are distributed among these distances:
78 3 0.04
79 55 0.65
80 27 0.32
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.27
Consensus pattern (77 bp):
ACTATATCCGGTTAAGTCCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCAAAGGCA
TTGGAACGAGTT
Found at i:51425493 original size:142 final size:141
Alignment explanation
Indices: 51425237--51425493 Score: 304
Period size: 142 Copynumber: 1.8 Consensus size: 141
51425227 TTTAGAATAA
* * *
51425237 AAGATATTTATTAATTAAATAATTAAATAATGAGATTTTTGTTTGATAAATAAATTAAATAATGA
1 AAGATATTTATTAATTAAATAATTAAATAATGAGATTTTTATGTAATAAATAAATTAAATAATGA
* * * * * **
51425302 CAATTGTAATGAGTTAATTGGTACAAATGTGAAAATATAAGTGTGTACAATTGTAATATTAGTAT
66 CAAATGTAATGAATAAATTGGTAC-AATGTGAAAATAAAAATGCATACAATTGTAATATTAGTAT
51425367 TTAATATTAAAT
130 TTAATATTAAAT
* * * * *
51425379 AAGATATTTCTTAATTAAATAATTATATTATGAGATTTTTATGTAATAAATATATTAAATTATGA
1 AAGATATTTATTAATTAAATAATTAAATAATGAGATTTTTATGTAATAAATAAATTAAATAATGA
*
51425444 CAAATGT-AT-AATAAAATTTGTGAC-ATGTGTAATAATAAAAATGCATACAA
66 CAAATGTAATGAAT-AAATTGGT-ACAATGTG-AA-AATAAAAATGCATACAA
51425494 GTGTTAAATA
Statistics
Matches: 95, Mismatches: 16, Indels: 8
0.80 0.13 0.07
Matches are distributed among these distances:
140 7 0.07
141 10 0.11
142 78 0.82
ACGTcount: A:0.46, C:0.03, G:0.11, T:0.40
Consensus pattern (141 bp):
AAGATATTTATTAATTAAATAATTAAATAATGAGATTTTTATGTAATAAATAAATTAAATAATGA
CAAATGTAATGAATAAATTGGTACAATGTGAAAATAAAAATGCATACAATTGTAATATTAGTATT
TAATATTAAAT
Found at i:51425510 original size:142 final size:141
Alignment explanation
Indices: 51425237--51425529 Score: 299
Period size: 142 Copynumber: 2.1 Consensus size: 141
51425227 TTTAGAATAA
* * *
51425237 AAGATATTTATTAATTAAATAATTAAATAATGAGATTTTTGTTTGATAAATAAATTAAATAATGA
1 AAGATATTTATTAATTAAATAATTAAATAATGAGATTTTTATGTAATAAATAAATTAAATAATGA
* * * * * ** * * *
51425302 CAATTGTAATGAGTTAATTGGTACAAATGTGAAAATATAAGTGTGTACAATTGTAATATTAGTAT
66 CAAATGTAATGAATAAATTGGTAC-AATGTGAAAATAAAAATGCATACAAGTGTAATATAAATAT
51425367 TTAATATTAAAT
130 TTAATATTAAAT
* * * * *
51425379 AAGATATTTCTTAATTAAATAATTATATTATGAGATTTTTATGTAATAAATATATTAAATTATGA
1 AAGATATTTATTAATTAAATAATTAAATAATGAGATTTTTATGTAATAAATAAATTAAATAATGA
*
51425444 CAAATGT-AT-AATAAAATTTGTGAC-ATGTGTAATAATAAAAATGCATACAAGTGTTAA-ATAA
66 CAAATGTAATGAAT-AAATTGGT-ACAATGTG-AA-AATAAAAATGCATACAAGTG-TAATATAA
**
51425505 ATATTTGTTATTAAAT
126 ATATTTAATATTAAAT
*
51425521 -AGATTTTTA
1 AAGATATTTA
51425530 ATGTAGATAT
Statistics
Matches: 123, Mismatches: 23, Indels: 11
0.78 0.15 0.07
Matches are distributed among these distances:
140 7 0.06
141 17 0.14
142 96 0.78
143 3 0.02
ACGTcount: A:0.45, C:0.03, G:0.11, T:0.41
Consensus pattern (141 bp):
AAGATATTTATTAATTAAATAATTAAATAATGAGATTTTTATGTAATAAATAAATTAAATAATGA
CAAATGTAATGAATAAATTGGTACAATGTGAAAATAAAAATGCATACAAGTGTAATATAAATATT
TAATATTAAAT
Done.