Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr03 135709677
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 135709677
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 168 of 438
Found at i:51426396 original size:15 final size:15
Alignment explanation
Indices: 51426373--51426420 Score: 62
Period size: 15 Copynumber: 3.3 Consensus size: 15
51426363 TATCAAATTT
51426373 ATATTGATTGAAATC
1 ATATTGATTGAAATC
* * *
51426388 ATTTTGATTGAATTT
1 ATATTGATTGAAATC
51426403 ATATTGATTGAAAT-
1 ATATTGATTGAAATC
51426417 ATAT
1 ATAT
51426421 ATTATATATA
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
14 4 0.14
15 24 0.86
ACGTcount: A:0.38, C:0.02, G:0.12, T:0.48
Consensus pattern (15 bp):
ATATTGATTGAAATC
Found at i:51427087 original size:13 final size:13
Alignment explanation
Indices: 51427046--51427092 Score: 55
Period size: 13 Copynumber: 3.7 Consensus size: 13
51427036 GCTATTGGAA
51427046 TGAAA-TGAGAAAT
1 TGAAATTGAG-AAT
51427059 TG-AATTGAGAAT
1 TGAAATTGAGAAT
51427071 TGAAATTGAGACA-
1 TGAAATTGAGA-AT
51427084 TGAAATTGA
1 TGAAATTGA
51427093 AAACATAAAC
Statistics
Matches: 31, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
12 7 0.23
13 23 0.74
14 1 0.03
ACGTcount: A:0.47, C:0.02, G:0.23, T:0.28
Consensus pattern (13 bp):
TGAAATTGAGAAT
Found at i:51434096 original size:27 final size:28
Alignment explanation
Indices: 51434040--51434109 Score: 133
Period size: 27 Copynumber: 2.5 Consensus size: 28
51434030 AAATTTGTAC
51434040 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
51434068 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
51434095 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
51434110 GACTCACTAT
Statistics
Matches: 42, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
27 25 0.60
28 17 0.40
ACGTcount: A:0.29, C:0.13, G:0.27, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATTATAT
Found at i:51437474 original size:13 final size:13
Alignment explanation
Indices: 51437456--51437488 Score: 57
Period size: 13 Copynumber: 2.5 Consensus size: 13
51437446 GTTACACGCT
51437456 CGTGTGGGTAGGC
1 CGTGTGGGTAGGC
*
51437469 CGTGTGGGTAGGT
1 CGTGTGGGTAGGC
51437482 CGTGTGG
1 CGTGTGG
51437489 TCACACATGC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.06, C:0.12, G:0.55, T:0.27
Consensus pattern (13 bp):
CGTGTGGGTAGGC
Found at i:51440411 original size:6 final size:6
Alignment explanation
Indices: 51440382--51440432 Score: 50
Period size: 6 Copynumber: 8.3 Consensus size: 6
51440372 GAATTAGAAT
* * *
51440382 ATAAAA AT-TAA ATTAAA TTAAAA ATAAAA ATATTAAA ATAAAA ATAAAA
1 ATAAAA ATAAAA ATAAAA ATAAAA ATAAAA ATA--AAA ATAAAA ATAAAA
51440431 AT
1 AT
51440433 GGCTAAATTA
Statistics
Matches: 37, Mismatches: 5, Indels: 6
0.77 0.10 0.12
Matches are distributed among these distances:
5 4 0.11
6 27 0.73
8 6 0.16
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (6 bp):
ATAAAA
Found at i:51440418 original size:20 final size:20
Alignment explanation
Indices: 51440393--51440432 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
51440383 TAAAAATTAA
*
51440393 ATTAAATTAAAAATAAAAAT
1 ATTAAAATAAAAATAAAAAT
51440413 ATTAAAATAAAAATAAAAAT
1 ATTAAAATAAAAATAAAAAT
51440433 GGCTAAATTA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (20 bp):
ATTAAAATAAAAATAAAAAT
Found at i:51442617 original size:16 final size:16
Alignment explanation
Indices: 51442596--51442627 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
51442586 CGTGTAATGC
51442596 CCCAAAAATCCTGAAA
1 CCCAAAAATCCTGAAA
51442612 CCCAAAAATCCTGAAA
1 CCCAAAAATCCTGAAA
51442628 TCTTGAACTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.31, G:0.06, T:0.12
Consensus pattern (16 bp):
CCCAAAAATCCTGAAA
Found at i:51444148 original size:29 final size:29
Alignment explanation
Indices: 51444031--51444148 Score: 137
Period size: 29 Copynumber: 4.1 Consensus size: 29
51444021 TGAATATAAG
* * * *
51444031 GTGATTTGGGCCTAACGGGCCATATAAAG
1 GTGAATTGGGCCTAATGGGCCATATGAAT
* *
51444060 GTGATTTGGGCCTAATAGGCCATATGAAT
1 GTGAATTGGGCCTAATGGGCCATATGAAT
* * *
51444089 ATGAATTCGGCCTGATGGGCCATATGAAT
1 GTGAATTGGGCCTAATGGGCCATATGAAT
* *
51444118 GTGAATTGGGCCTGATGGGCCATATGCAT
1 GTGAATTGGGCCTAATGGGCCATATGAAT
51444147 GT
1 GT
51444149 ATGTAGGGGT
Statistics
Matches: 77, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
29 77 1.00
ACGTcount: A:0.25, C:0.16, G:0.31, T:0.28
Consensus pattern (29 bp):
GTGAATTGGGCCTAATGGGCCATATGAAT
Found at i:51448522 original size:29 final size:29
Alignment explanation
Indices: 51448480--51448626 Score: 151
Period size: 29 Copynumber: 5.2 Consensus size: 29
51448470 GTGAGCATTA
* *
51448480 ATAT-AAGGTGATTTGGGCCTAACGGGCC
1 ATATGAAGGTGAATTGGGCCTAATGGGCC
* * *
51448508 ATATAAAGGTGATTTGGGCCTAATAGGCC
1 ATATGAAGGTGAATTGGGCCTAATGGGCC
* * *
51448537 ATATGAATGTGAATTGGGCATGATGGGCC
1 ATATGAAGGTGAATTGGGCCTAATGGGCC
*
51448566 ATATGAATGTGAATTGGGCCTAATGGGCC
1 ATATGAAGGTGAATTGGGCCTAATGGGCC
*
51448595 ATACGAA--TGAGA-TGGGCC-AAGTGGGCC
1 ATATGAAGGTGA-ATTGGGCCTAA-TGGGCC
51448622 ATATG
1 ATATG
51448627 CATGTATGTA
Statistics
Matches: 104, Mismatches: 12, Indels: 7
0.85 0.10 0.06
Matches are distributed among these distances:
26 2 0.02
27 19 0.18
28 5 0.05
29 78 0.75
ACGTcount: A:0.29, C:0.14, G:0.32, T:0.25
Consensus pattern (29 bp):
ATATGAAGGTGAATTGGGCCTAATGGGCC
Found at i:51456506 original size:6 final size:6
Alignment explanation
Indices: 51456497--51456521 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
51456487 TAGATGTAGC
51456497 GGGAGA GGGAGA GGGAGA GGGAGA G
1 GGGAGA GGGAGA GGGAGA GGGAGA G
51456522 TCAGAAAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.32, C:0.00, G:0.68, T:0.00
Consensus pattern (6 bp):
GGGAGA
Found at i:51472343 original size:27 final size:27
Alignment explanation
Indices: 51472313--51472502 Score: 224
Period size: 27 Copynumber: 7.1 Consensus size: 27
51472303 GTCGTTAAGA
51472313 CCCTGGTTTGTAAAATTACCAAAATAC
1 CCCTGGTTTGTAAAATTACCAAAATAC
* * *
51472340 CCCTGATTT-TAAAATTATCGAAATAC
1 CCCTGGTTTGTAAAATTACCAAAATAC
* *
51472366 CCTTGGTTTGTAAAATTACCGAAATAC
1 CCCTGGTTTGTAAAATTACCAAAATAC
* **
51472393 CACTAATTTGTAAAATTACCAAAATAC
1 CCCTGGTTTGTAAAATTACCAAAATAC
51472420 CCCTGGTTTGTAAAATTACCAAAATAC
1 CCCTGGTTTGTAAAATTACCAAAATAC
* *
51472447 CCAT-GTAGTGTAAAATTACCAAAATAC
1 CCCTGGT-TTGTAAAATTACCAAAATAC
* * *
51472474 CCCT-ATAGTGTAAAATTACCGAAATAC
1 CCCTGGT-TTGTAAAATTACCAAAATAC
51472501 CC
1 CC
51472503 TTATAGTGTA
Statistics
Matches: 142, Mismatches: 19, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
26 24 0.17
27 118 0.83
ACGTcount: A:0.39, C:0.21, G:0.10, T:0.29
Consensus pattern (27 bp):
CCCTGGTTTGTAAAATTACCAAAATAC
Found at i:51472430 original size:54 final size:53
Alignment explanation
Indices: 51472313--51472532 Score: 241
Period size: 54 Copynumber: 4.1 Consensus size: 53
51472303 GTCGTTAAGA
* *
51472313 CCCTGGTTTGTAAAATTACCAAAATACCCCTGAT-TT-TAAAATTATCGAAATAC
1 CCCTGGTTTGTAAAATTACCAAAATA-CCCT-ATATTGTAAAATTACCAAAATAC
* *
51472366 CCTTGGTTTGTAAAATTACCGAAATACCACTA-ATTTGTAAAATTACCAAAATAC
1 CCCTGGTTTGTAAAATTACCAAAATACC-CTATA-TTGTAAAATTACCAAAATAC
* *
51472420 CCCTGGTTTGTAAAATTACCAAAATACCCATGTAGTGTAAAATTACCAAAATAC
1 CCCTGGTTTGTAAAATTACCAAAATACCC-TATATTGTAAAATTACCAAAATAC
* * * * * *
51472474 CCCT-ATAGTGTAAAATTACCGAAATACCCTTATAGTGTAAAATTATCGAAATAC
1 CCCTGGT-TTGTAAAATTACCAAAATACCC-TATATTGTAAAATTACCAAAATAC
51472528 CCCTG
1 CCCTG
51472533 TAGGGCAAAA
Statistics
Matches: 144, Mismatches: 15, Indels: 14
0.83 0.09 0.08
Matches are distributed among these distances:
52 3 0.02
53 30 0.21
54 110 0.76
55 1 0.01
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.30
Consensus pattern (53 bp):
CCCTGGTTTGTAAAATTACCAAAATACCCTATATTGTAAAATTACCAAAATAC
Found at i:51472543 original size:27 final size:27
Alignment explanation
Indices: 51472321--51472531 Score: 200
Period size: 27 Copynumber: 7.9 Consensus size: 27
51472311 GACCCTGGTT
51472321 TGTAAAATTACCAAAATACCCCTGAT--
1 TGTAAAATTACCAAAATACCCCT-ATAG
* * * *
51472347 TTTAAAATTATCGAAATA-CCCT-TGG
1 TGTAAAATTACCAAAATACCCCTATAG
* * *
51472372 TTTGTAAAATTACCGAAATACCACTA-ATT
1 --TGTAAAATTACCAAAATACCCCTATA-G
* *
51472401 TGTAAAATTACCAAAATACCCCTGGT-T
1 TGTAAAATTACCAAAATACCCCT-ATAG
* *
51472428 TGTAAAATTACCAAAATACCCATGTAG
1 TGTAAAATTACCAAAATACCCCTATAG
51472455 TGTAAAATTACCAAAATACCCCTATAG
1 TGTAAAATTACCAAAATACCCCTATAG
* *
51472482 TGTAAAATTACCGAAATACCCTTATAG
1 TGTAAAATTACCAAAATACCCCTATAG
* *
51472509 TGTAAAATTATCGAAATACCCCT
1 TGTAAAATTACCAAAATACCCCT
51472532 GTAGGGCAAA
Statistics
Matches: 156, Mismatches: 19, Indels: 19
0.80 0.10 0.10
Matches are distributed among these distances:
23 1 0.01
25 4 0.03
26 17 0.11
27 131 0.84
28 3 0.02
ACGTcount: A:0.41, C:0.20, G:0.09, T:0.30
Consensus pattern (27 bp):
TGTAAAATTACCAAAATACCCCTATAG
Found at i:51472543 original size:81 final size:80
Alignment explanation
Indices: 51472321--51472535 Score: 256
Period size: 81 Copynumber: 2.7 Consensus size: 80
51472311 GACCCTGGTT
* * *
51472321 TGTAAAATTACCAAAATACCCCTGATTTTAAAATTATCGAAATACCCTTGGT-TTGTAAAATTAC
1 TGTAAAATTACCAAAATACCCCTGATTGTAAAATTATCGAAATACCCAT-GTAGTGTAAAATTAC
* *
51472385 CGAAATACCACTAATT
65 CAAAATACCACTAATG
* * *
51472401 TGTAAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCATGTAGTGTAAAATTAC
1 TGTAAAATTACCAAAATACCCCT-GATTGTAAAATTATCGAAATACCCATGTAGTGTAAAATTAC
*
51472466 CAAAATACCCCT-ATAG
65 CAAAATACCACTAAT-G
* * *
51472482 TGTAAAATTACCGAAATA-CCCTTATAGTGTAAAATTATCGAAATACCCCTGTAG
1 TGTAAAATTACCAAAATACCCCTGAT--TGTAAAATTATCGAAATACCCATGTAG
51472536 GGCAAAATGA
Statistics
Matches: 115, Mismatches: 15, Indels: 9
0.83 0.11 0.06
Matches are distributed among these distances:
79 1 0.01
80 31 0.27
81 83 0.72
ACGTcount: A:0.40, C:0.20, G:0.10, T:0.30
Consensus pattern (80 bp):
TGTAAAATTACCAAAATACCCCTGATTGTAAAATTATCGAAATACCCATGTAGTGTAAAATTACC
AAAATACCACTAATG
Found at i:51475489 original size:40 final size:40
Alignment explanation
Indices: 51475433--51475633 Score: 289
Period size: 40 Copynumber: 5.0 Consensus size: 40
51475423 TGGATGATAA
* * * *
51475433 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTA-TAT
* *
51475473 TCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
*
51475513 CCGGCCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
51475553 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
* *
51475593 CCGGGCTATGTCCCGAAGGCATTCGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTA-CTATAT
51475633 C
1 C
51475634 TGGTTAAATC
Statistics
Matches: 149, Mismatches: 10, Indels: 4
0.91 0.06 0.02
Matches are distributed among these distances:
39 3 0.02
40 146 0.98
ACGTcount: A:0.22, C:0.25, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
Found at i:51482447 original size:40 final size:40
Alignment explanation
Indices: 51482388--51482494 Score: 133
Period size: 40 Copynumber: 2.7 Consensus size: 40
51482378 CAATTGAATG
* * * *
51482388 ATATCCAGGCTAAGTCCCGAAGACATTTATGCTGGTAATT
1 ATATCCAGGCTAAGACCCGAAGGCATTTATGCTAGTAACT
* * * *
51482428 ATATCCAGGTTAAGACCCGAAGGCAATTGTGCTAGTGACT
1 ATATCCAGGCTAAGACCCGAAGGCATTTATGCTAGTAACT
*
51482468 ACATCCAGGCTAAGACCCGAAGGCATT
1 ATATCCAGGCTAAGACCCGAAGGCATT
51482495 CGTGTGAGTT
Statistics
Matches: 56, Mismatches: 11, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 56 1.00
ACGTcount: A:0.31, C:0.22, G:0.22, T:0.24
Consensus pattern (40 bp):
ATATCCAGGCTAAGACCCGAAGGCATTTATGCTAGTAACT
Found at i:51482519 original size:40 final size:40
Alignment explanation
Indices: 51482438--51482580 Score: 137
Period size: 40 Copynumber: 3.6 Consensus size: 40
51482428 ATATCCAGGT
* * * *
51482438 TAAGACCCGAAGGCAATT-GTGCTAGT-GACTACATCCAGGC
1 TAAGACCCGAAGGC-ATTCGTGCAAGTCG-TTAAATCCGGGC
** * *
51482478 TAAGACCCGAAGGCATTCGTGTGAGTTGTTAAATTCGGGC
1 TAAGACCCGAAGGCATTCGTGCAAGTCGTTAAATCCGGGC
* * **
51482518 TAATACCCGAAGGCATTTGTGCAAGTCGTTCTATCCGGGC
1 TAAGACCCGAAGGCATTCGTGCAAGTCGTTAAATCCGGGC
*
51482558 TAAGACCTGAAGGCATTCGTGCA
1 TAAGACCCGAAGGCATTCGTGCA
51482581 TGTGGTTATA
Statistics
Matches: 84, Mismatches: 17, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
39 3 0.04
40 80 0.95
41 1 0.01
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.24
Consensus pattern (40 bp):
TAAGACCCGAAGGCATTCGTGCAAGTCGTTAAATCCGGGC
Found at i:51490174 original size:94 final size:94
Alignment explanation
Indices: 51490008--51490197 Score: 353
Period size: 94 Copynumber: 2.0 Consensus size: 94
51489998 TGGGTCTCCT
*
51490008 TATAATCAGATTGAGCTCGTTGAATAGAGGAATGGCATATTGTTGAATGGCATAGTTTTTATCAT
1 TATAATCAGATTGAGCTCATTGAATAGAGGAATGGCATATTGTTGAATGGCATAGTTTTTATCAT
51490073 CGGCAACAATGATCAGATTGTAAGGATTA
66 CGGCAACAATGATCAGATTGTAAGGATTA
*
51490102 TATACTCAGATTGAGCTCATTGAATAGAGGAATGGCATATTGTTGAATGGCATAGTTTTTATCAT
1 TATAATCAGATTGAGCTCATTGAATAGAGGAATGGCATATTGTTGAATGGCATAGTTTTTATCAT
*
51490167 CGGCAACAATGATCAGATTGTGAGGATTA
66 CGGCAACAATGATCAGATTGTAAGGATTA
51490196 TA
1 TA
51490198 AATGAATGTT
Statistics
Matches: 93, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
94 93 1.00
ACGTcount: A:0.33, C:0.11, G:0.23, T:0.33
Consensus pattern (94 bp):
TATAATCAGATTGAGCTCATTGAATAGAGGAATGGCATATTGTTGAATGGCATAGTTTTTATCAT
CGGCAACAATGATCAGATTGTAAGGATTA
Found at i:51498218 original size:14 final size:14
Alignment explanation
Indices: 51498199--51498229 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
51498189 TAGAAAGAGA
51498199 AAACTTTTGAAAAT
1 AAACTTTTGAAAAT
51498213 AAACTTTTGAAAAT
1 AAACTTTTGAAAAT
51498227 AAA
1 AAA
51498230 TAAAATATAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.55, C:0.06, G:0.06, T:0.32
Consensus pattern (14 bp):
AAACTTTTGAAAAT
Found at i:51499316 original size:27 final size:27
Alignment explanation
Indices: 51499286--51499339 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
51499276 ATATTTAATT
51499286 ATTA-TAAAATAATTAAATTTTACTTAA
1 ATTATTAAAAT-ATTAAATTTTACTTAA
* *
51499313 ATTATTAAAATTTTGAATTTTACTTAA
1 ATTATTAAAATATTAAATTTTACTTAA
51499340 TTTTATAATA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
27 18 0.75
28 6 0.25
ACGTcount: A:0.46, C:0.04, G:0.02, T:0.48
Consensus pattern (27 bp):
ATTATTAAAATATTAAATTTTACTTAA
Found at i:51501783 original size:37 final size:37
Alignment explanation
Indices: 51501724--51501832 Score: 173
Period size: 37 Copynumber: 2.9 Consensus size: 37
51501714 AGCTCAGAAG
* *
51501724 AAATCTCCACACGAAGTTATCAGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCAGGTCTTACCCGGACA
*
51501761 AAATCTCCACACGTAGTCATCAGGTCTTACCCAGACA
1 AAATCTCCACACGTAGTCATCAGGTCTTACCCGGACA
* *
51501798 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCAGGTCTTACCCGGA
51501833 ATATATTTCC
Statistics
Matches: 66, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 66 1.00
ACGTcount: A:0.29, C:0.31, G:0.17, T:0.23
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCAGGTCTTACCCGGACA
Found at i:51502033 original size:48 final size:48
Alignment explanation
Indices: 51501979--51502113 Score: 207
Period size: 48 Copynumber: 2.8 Consensus size: 48
51501969 GCACATCGCC
51501979 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATACCTCA
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATACCTCA
** *
51502027 TACATATTTTGCACTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATACCTCA
* * * *
51502075 TACATATTTCACATTGGCCATTCGGCCTTATCACATATA
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATA
51502114 TGCATGTTCA
Statistics
Matches: 78, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
48 78 1.00
ACGTcount: A:0.30, C:0.28, G:0.08, T:0.34
Consensus pattern (48 bp):
TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATACCTCA
Found at i:51502148 original size:47 final size:47
Alignment explanation
Indices: 51502083--51502323 Score: 410
Period size: 47 Copynumber: 5.1 Consensus size: 47
51502073 CATACATATT
* *
51502083 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCA
* *
51502130 TCATATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCA
*
51502177 TCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCA
* *
51502224 TCATATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCA
*
51502271 TCACATTGGCCATTCGACCTTATCACACATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCA
51502318 TCACAT
1 TCACAT
51502324 AAAATCCTAA
Statistics
Matches: 181, Mismatches: 13, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 181 1.00
ACGTcount: A:0.26, C:0.29, G:0.12, T:0.33
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCA
Found at i:51502274 original size:25 final size:24
Alignment explanation
Indices: 51502245--51502322 Score: 67
Period size: 23 Copynumber: 3.2 Consensus size: 24
51502235 ATTCGGCCTT
51502245 ATCACACATATGCATGCTCACATTC
1 ATCACACATATGCATG-TCACATTC
*
51502270 AT--CACAT-TGGCCAT-TCGACCTT-
1 ATCACACATAT-G-CATGTC-ACATTC
51502292 ATCACACATATGCATGTTCACATTC
1 ATCACACATATGCATG-TCACATTC
51502317 ATCACA
1 ATCACA
51502323 TAAAATCCTA
Statistics
Matches: 42, Mismatches: 2, Indels: 18
0.68 0.03 0.29
Matches are distributed among these distances:
22 5 0.12
23 13 0.31
24 13 0.31
25 11 0.26
ACGTcount: A:0.31, C:0.31, G:0.09, T:0.29
Consensus pattern (24 bp):
ATCACACATATGCATGTCACATTC
Found at i:51508246 original size:19 final size:19
Alignment explanation
Indices: 51508200--51508247 Score: 71
Period size: 19 Copynumber: 2.6 Consensus size: 19
51508190 GTATATATTT
51508200 TAAA-TTTATTTAGGTAGA
1 TAAATTTTATTTAGGTAGA
*
51508218 TAAATCTTATTTAGGTAGA
1 TAAATTTTATTTAGGTAGA
*
51508237 TAATTTTTATT
1 TAAATTTTATT
51508248 CATATTCTAG
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
18 4 0.15
19 22 0.85
ACGTcount: A:0.35, C:0.02, G:0.12, T:0.50
Consensus pattern (19 bp):
TAAATTTTATTTAGGTAGA
Found at i:51511615 original size:15 final size:16
Alignment explanation
Indices: 51511591--51511620 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
51511581 GCATTGAAAC
51511591 TTTTATTTTATTTTAT
1 TTTTATTTTATTTTAT
51511607 TTTTA-TTTATTTTA
1 TTTTATTTTATTTTA
51511621 CTTTGTTAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (16 bp):
TTTTATTTTATTTTAT
Found at i:51513667 original size:26 final size:26
Alignment explanation
Indices: 51513631--51513692 Score: 72
Period size: 27 Copynumber: 2.3 Consensus size: 26
51513621 TAAGCTCTTA
*
51513631 TGAGCATCCCGATTAAA-GGCTATTTG
1 TGAGCTTCCCG-TTAAATGGCTATTTG
* *
51513657 TGAGTTTCCCGTTAAATTGGCTCTTTG
1 TGAGCTTCCCGTTAAA-TGGCTATTTG
51513684 TGAGCTTCC
1 TGAGCTTCC
51513693 TGATAGTTCT
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
25 5 0.17
26 9 0.30
27 16 0.53
ACGTcount: A:0.19, C:0.21, G:0.23, T:0.37
Consensus pattern (26 bp):
TGAGCTTCCCGTTAAATGGCTATTTG
Found at i:51513762 original size:24 final size:23
Alignment explanation
Indices: 51513707--51513767 Score: 61
Period size: 24 Copynumber: 2.6 Consensus size: 23
51513697 AGTTCTCACT
51513707 TGAACTTCTCGATATTGGCTATA
1 TGAACTTCTCGATATTGGCTATA
* *
51513730 CGAAGCTTCTCGATA-TGGTTCTTTA
1 TGAA-CTTCTCGATATTGG--CTATA
*
51513755 TGAACTTCCCGAT
1 TGAACTTCTCGAT
51513768 TATAGCTTTT
Statistics
Matches: 31, Mismatches: 4, Indels: 5
0.77 0.10 0.12
Matches are distributed among these distances:
23 6 0.19
24 18 0.58
25 7 0.23
ACGTcount: A:0.23, C:0.21, G:0.18, T:0.38
Consensus pattern (23 bp):
TGAACTTCTCGATATTGGCTATA
Found at i:51517034 original size:12 final size:13
Alignment explanation
Indices: 51517006--51517038 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
51516996 TTATTTCTTT
51517006 TTCTCCATCTACC
1 TTCTCCATCTACC
*
51517019 TTCTCC-TCTTCC
1 TTCTCCATCTACC
51517031 TTCTCCAT
1 TTCTCCAT
51517039 AGCTGAACCC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
12 11 0.61
13 7 0.39
ACGTcount: A:0.09, C:0.45, G:0.00, T:0.45
Consensus pattern (13 bp):
TTCTCCATCTACC
Found at i:51518138 original size:28 final size:28
Alignment explanation
Indices: 51518106--51518168 Score: 99
Period size: 28 Copynumber: 2.2 Consensus size: 28
51518096 ATTTACTAGA
*
51518106 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATGACCATT
* *
51518134 ATACCCCTATGTGTGCAAAATGACCTTT
1 ATACCCCTATGTATGCAAAATGACCATT
51518162 ATACCCC
1 ATACCCC
51518169 CTAGGGTTAA
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.32, C:0.29, G:0.10, T:0.30
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATGACCATT
Found at i:51518318 original size:28 final size:27
Alignment explanation
Indices: 51518277--51518366 Score: 101
Period size: 27 Copynumber: 3.2 Consensus size: 27
51518267 AGGAAGCGTC
51518277 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAA-TATCTGTT
* ** *
51518305 CTGGTGGCCCTGCCACGTATATCTATT
1 CTGGTGGCACTGCCACAAATATCTGTT
51518332 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCAC-AAATATCTGT-T
51518361 CTGGTG
1 CTGGTG
51518367 ACTCTGTCAC
Statistics
Matches: 51, Mismatches: 8, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
27 22 0.43
28 22 0.43
29 7 0.14
ACGTcount: A:0.20, C:0.24, G:0.23, T:0.32
Consensus pattern (27 bp):
CTGGTGGCACTGCCACAAATATCTGTT
Found at i:51518377 original size:29 final size:28
Alignment explanation
Indices: 51518287--51518377 Score: 76
Period size: 27 Copynumber: 3.2 Consensus size: 28
51518277 CTGGTGGCTA
* * * *
51518287 TGCCACAAATTATCTGTTCTGGTGGCCC
1 TGCCACAAAATATCTATTCTGGTGACAC
** *
51518315 TGCCAC-GTATATCTATTCTGGTGGCAC
1 TGCCACAAAATATCTATTCTGGTGACAC
* *
51518342 TGCCACAAAATATCTGTATCTGGTGACTC
1 TGCCACAAAATATCTAT-TCTGGTGACAC
*
51518371 TGTCACA
1 TGCCACA
51518378 TTTTCTGTAT
Statistics
Matches: 50, Mismatches: 11, Indels: 3
0.78 0.17 0.05
Matches are distributed among these distances:
27 22 0.44
28 13 0.26
29 15 0.30
ACGTcount: A:0.22, C:0.26, G:0.20, T:0.32
Consensus pattern (28 bp):
TGCCACAAAATATCTATTCTGGTGACAC
Found at i:51525994 original size:28 final size:28
Alignment explanation
Indices: 51525962--51526024 Score: 99
Period size: 28 Copynumber: 2.2 Consensus size: 28
51525952 ATTTACTAGA
*
51525962 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATGACCATT
* *
51525990 ATACCCCTATGTGTGCAAAATGACCTTT
1 ATACCCCTATGTATGCAAAATGACCATT
51526018 ATACCCC
1 ATACCCC
51526025 CTAGGGTTAA
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.32, C:0.29, G:0.10, T:0.30
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATGACCATT
Found at i:51526191 original size:27 final size:28
Alignment explanation
Indices: 51526133--51526222 Score: 112
Period size: 27 Copynumber: 3.2 Consensus size: 28
51526123 AGGAAGCGTC
*
51526133 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAAATATCTGTT
* **
51526161 CTGGTGGCCCTGCCAC-GTATATCTGTT
1 CTGGTGGCACTGCCACAAAATATCTGTT
51526188 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCACAAAATATCTGT-T
51526217 CTGGTG
1 CTGGTG
51526223 ACTCTGTCAC
Statistics
Matches: 52, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
27 23 0.44
28 22 0.42
29 7 0.13
ACGTcount: A:0.19, C:0.24, G:0.24, T:0.32
Consensus pattern (28 bp):
CTGGTGGCACTGCCACAAAATATCTGTT
Found at i:51526233 original size:29 final size:28
Alignment explanation
Indices: 51526143--51526233 Score: 94
Period size: 27 Copynumber: 3.2 Consensus size: 28
51526133 CTGGTGGCTA
* * *
51526143 TGCCACAAATTATCTGTTCTGGTGGCCC
1 TGCCACAAAATATCTGTTCTGGTGACAC
** *
51526171 TGCCAC-GTATATCTGTTCTGGTGGCAC
1 TGCCACAAAATATCTGTTCTGGTGACAC
*
51526198 TGCCACAAAATATCTGTATCTGGTGACTC
1 TGCCACAAAATATCTGT-TCTGGTGACAC
*
51526227 TGTCACA
1 TGCCACA
51526234 TTTTCTGTAT
Statistics
Matches: 52, Mismatches: 9, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
27 23 0.44
28 14 0.27
29 15 0.29
ACGTcount: A:0.21, C:0.26, G:0.21, T:0.32
Consensus pattern (28 bp):
TGCCACAAAATATCTGTTCTGGTGACAC
Found at i:51526241 original size:55 final size:56
Alignment explanation
Indices: 51526133--51526247 Score: 137
Period size: 55 Copynumber: 2.1 Consensus size: 56
51526123 AGGAAGCGTC
* * *
51526133 CTGGTGGCTATGCCACAAATTATCTGTTCTGGTGGCCCTGCCACGTATATCTGT-T
1 CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTAT
* * *
51526188 CTGGTGGC-ACTGCCACAAAATATCTGTATCTGGTGACTCTGTCACAT-TTTCTGTAT
1 CTGGTGGCTA-TGCCACAAAATATCTGT-TCTGGTGACCCTGCCACATATATCTGTAT
51526244 CTGG
1 CTGG
51526248 CAGCCATGCT
Statistics
Matches: 51, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
54 1 0.02
55 30 0.59
56 20 0.39
ACGTcount: A:0.18, C:0.24, G:0.23, T:0.35
Consensus pattern (56 bp):
CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTAT
Found at i:51532944 original size:42 final size:42
Alignment explanation
Indices: 51532882--51533033 Score: 180
Period size: 42 Copynumber: 3.6 Consensus size: 42
51532872 ACTGAGTTTA
* * *
51532882 CGTGTAAGACCATATATGGGATATGGCATCTATATGAGATTT
1 CGTGTAAGACCATATTTGGGATATGGCATCGATATGAGACTT
* * *
51532924 TGTGTAAGACTATATTTGGGATATGGCAGCGATATGAGACTT
1 CGTGTAAGACCATATTTGGGATATGGCATCGATATGAGACTT
** * *
51532966 CGTGTAAGACCATAGCTGGGCTATTGGCATCGATACT-AGAGTT
1 CGTGTAAGACCATATTTGGGATA-TGGCATCGATA-TGAGACTT
*
51533009 CATGTAAGACCATATTTGGGATATG
1 CGTGTAAGACCATATTTGGGATATG
51533034 CAATTGGTAT
Statistics
Matches: 91, Mismatches: 17, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
42 56 0.62
43 34 0.37
44 1 0.01
ACGTcount: A:0.29, C:0.13, G:0.26, T:0.32
Consensus pattern (42 bp):
CGTGTAAGACCATATTTGGGATATGGCATCGATATGAGACTT
Found at i:51541192 original size:27 final size:27
Alignment explanation
Indices: 51541162--51541285 Score: 158
Period size: 27 Copynumber: 4.6 Consensus size: 27
51541152 TGAAATGCCT
**
51541162 TCGATTTGTAGAATTACCATTTTACCC
1 TCGATTTACAGAATTACCATTTTACCC
* * *
51541189 TCGATTTATAGAATTACCGTTTCACCC
1 TCGATTTACAGAATTACCATTTTACCC
* *
51541216 TCGATTTACAAAATTACCGTTTTACCC
1 TCGATTTACAGAATTACCATTTTACCC
* *
51541243 TTGATTTACAGAATTATCATTTTACCC
1 TCGATTTACAGAATTACCATTTTACCC
*
51541270 TCGATTTACAAAATTA
1 TCGATTTACAGAATTA
51541286 TCGAAATACC
Statistics
Matches: 85, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 85 1.00
ACGTcount: A:0.30, C:0.22, G:0.09, T:0.40
Consensus pattern (27 bp):
TCGATTTACAGAATTACCATTTTACCC
Found at i:51541317 original size:27 final size:27
Alignment explanation
Indices: 51541287--51541505 Score: 285
Period size: 27 Copynumber: 8.1 Consensus size: 27
51541277 ACAAAATTAT
51541287 CGAAATACCCCTGTAGGGTAGAAATAC
1 CGAAATACCCCTGTAGGGTAGAAATAC
* * *
51541314 CGAAATACCCTTATTGGGTAGAAATAC
1 CGAAATACCCCTGTAGGGTAGAAATAC
51541341 CGAAATACCCCTGTAGGGTAGAAATAC
1 CGAAATACCCCTGTAGGGTAGAAATAC
* *
51541368 CGAAATACCCCTATAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAAATAC
** *
51541395 TAAAATACCCCTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAAATAC
* *
51541422 CGAAATACCCTTGTAGGGTAGAAATGC
1 CGAAATACCCCTGTAGGGTAGAAATAC
* * *
51541449 CTAAATACCCCTGTACGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAAATAC
* * * *
51541476 TGAAATACTCCTGTAAGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAAATAC
51541503 CGA
1 CGA
51541506 GATAACCTTG
Statistics
Matches: 166, Mismatches: 26, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 166 1.00
ACGTcount: A:0.36, C:0.21, G:0.20, T:0.23
Consensus pattern (27 bp):
CGAAATACCCCTGTAGGGTAGAAATAC
Found at i:51541323 original size:54 final size:52
Alignment explanation
Indices: 51541265--51541432 Score: 164
Period size: 54 Copynumber: 3.1 Consensus size: 52
51541255 ATTATCATTT
*
51541265 TACCCTCGATTTACAAAATTATCGAAATACCCCTGTAGGGTAGAAATACCGAAA
1 TACCCTCTATTTA-AAAATTA-CGAAATACCCCTGTAGGGTAGAAATACCGAAA
*
51541319 TACCCT-TATTGGGTAGAAA-TACCGAAATACCCCTGTAGGGTAGAAATACCGAAA
1 TACCCTCTATT---TAAAAATTA-CGAAATACCCCTGTAGGGTAGAAATACCGAAA
* * * *
51541373 TACCC-CTATAGGGT-AGAATTACTAAAATACCCCTGTAGGGTAGAATTACCGAAA
1 TACCCTCTAT---TTAAAAATTAC-GAAATACCCCTGTAGGGTAGAAATACCGAAA
51541427 TACCCT
1 TACCCT
51541433 TGTAGGGTAG
Statistics
Matches: 96, Mismatches: 8, Indels: 19
0.78 0.07 0.15
Matches are distributed among these distances:
53 6 0.06
54 85 0.89
55 3 0.03
56 2 0.02
ACGTcount: A:0.37, C:0.22, G:0.17, T:0.24
Consensus pattern (52 bp):
TACCCTCTATTTAAAAATTACGAAATACCCCTGTAGGGTAGAAATACCGAAA
Found at i:51541898 original size:71 final size:67
Alignment explanation
Indices: 51541757--51541898 Score: 167
Period size: 67 Copynumber: 2.1 Consensus size: 67
51541747 GAGGAAGCGT
* * * *
51541757 TCTGGCAGCCTCGCTGCAATCTGGTGGCCTCGCCACATGTATCTGTTCTGGTGACTTCGTCACAA
1 TCTGGCAGCCTCGCTGCAATCTGGTGGCCTCGCCACATATATCTGTTCTGGTGACCTAGCCACAA
51541822 TA
66 TA
* * * * *
51541824 TCTGGCAGTCTCGTTGCAATCTGGTGGCTTCGCCACATATATATATCTGTTTTGGTGGCCTAGCC
1 TCTGGCAGCCTCGCTGCAATCTGGTGGCCTCGCCAC----ATATATCTGTTCTGGTGACCTAGCC
51541889 ACAATA
62 ACAATA
51541895 TCTG
1 TCTG
51541899 TATCTGGTGA
Statistics
Matches: 62, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
67 33 0.53
71 29 0.47
ACGTcount: A:0.18, C:0.27, G:0.23, T:0.32
Consensus pattern (67 bp):
TCTGGCAGCCTCGCTGCAATCTGGTGGCCTCGCCACATATATCTGTTCTGGTGACCTAGCCACAA
TA
Found at i:51542095 original size:6 final size:6
Alignment explanation
Indices: 51542044--51542134 Score: 78
Period size: 6 Copynumber: 14.8 Consensus size: 6
51542034 TTGCATTTAC
* * *
51542044 ATTCTG ATTTTG ATTCTG -TTACCTG ATACTG ATACTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* * *
51542093 ATTCTG -TCACCTG ATTTTG ATTCTG ATTCTA ATTCTG ATTCT
1 ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCT
51542135 AGTTCTGGTA
Statistics
Matches: 69, Mismatches: 10, Indels: 12
0.76 0.11 0.13
Matches are distributed among these distances:
5 3 0.04
6 58 0.84
7 6 0.09
8 2 0.03
ACGTcount: A:0.20, C:0.18, G:0.14, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:51542095 original size:37 final size:37
Alignment explanation
Indices: 51542044--51542134 Score: 128
Period size: 37 Copynumber: 2.5 Consensus size: 37
51542034 TTGCATTTAC
* *
51542044 ATTCTGATTTTGATTCTGTTACCTGATACTGATACTG
1 ATTCTGATTCTGATTCTGTCACCTGATACTGATACTG
** *
51542081 ATTCTGATTCTGATTCTGTCACCTGATTTTGATTCTG
1 ATTCTGATTCTGATTCTGTCACCTGATACTGATACTG
*
51542118 ATTCTAATTCTGATTCT
1 ATTCTGATTCTGATTCT
51542135 AGTTCTGGTA
Statistics
Matches: 48, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
37 48 1.00
ACGTcount: A:0.20, C:0.18, G:0.14, T:0.48
Consensus pattern (37 bp):
ATTCTGATTCTGATTCTGTCACCTGATACTGATACTG
Found at i:51542135 original size:12 final size:12
Alignment explanation
Indices: 51542112--51542141 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
51542102 CCTGATTTTG
51542112 ATTCTGATTCTA
1 ATTCTGATTCTA
51542124 ATTCTGATTCTA
1 ATTCTGATTCTA
*
51542136 GTTCTG
1 ATTCTG
51542142 GTAATGTTTC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.20, C:0.17, G:0.13, T:0.50
Consensus pattern (12 bp):
ATTCTGATTCTA
Found at i:51544137 original size:27 final size:27
Alignment explanation
Indices: 51544107--51544233 Score: 164
Period size: 27 Copynumber: 4.7 Consensus size: 27
51544097 TACTGAAATG
** **
51544107 CCCTCGATTTGTAGAATTACAATTTTA
1 CCCTCGATTTACAGAATTACCGTTTTA
* *
51544134 CCCTCGATTTATAGAATTACCGTTTCA
1 CCCTCGATTTACAGAATTACCGTTTTA
*
51544161 CCCTCGATTTACAAAATTACCGTTTTA
1 CCCTCGATTTACAGAATTACCGTTTTA
* *
51544188 CCCTTGATTTACAGAATTATCGTTTTA
1 CCCTCGATTTACAGAATTACCGTTTTA
*
51544215 CCCTCGATTTACAAAATTA
1 CCCTCGATTTACAGAATTA
51544234 TCGAAATACC
Statistics
Matches: 88, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 88 1.00
ACGTcount: A:0.29, C:0.23, G:0.09, T:0.39
Consensus pattern (27 bp):
CCCTCGATTTACAGAATTACCGTTTTA
Found at i:51544470 original size:27 final size:27
Alignment explanation
Indices: 51544229--51544478 Score: 284
Period size: 27 Copynumber: 9.3 Consensus size: 27
51544219 CGATTTACAA
*
51544229 AATTATCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
51544256 AAATACCGAAATACCCTTATTGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
51544283 AAATATCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
51544310 AAATACCGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
**
51544337 AATTACTAAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
51544364 AATTACCGAAATACTCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
51544391 AAATACCTAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
51544418 AATTACTGAAATACTCCTGTAAGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * * *
51544445 AATTACCGAGATAACCTTGTGGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
51544472 AATTACC
1 AATTACC
51544479 ATTTTACCCC
Statistics
Matches: 187, Mismatches: 36, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 187 1.00
ACGTcount: A:0.36, C:0.18, G:0.20, T:0.26
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:51545036 original size:6 final size:6
Alignment explanation
Indices: 51544992--51545082 Score: 78
Period size: 6 Copynumber: 14.8 Consensus size: 6
51544982 TTGCATTTAC
* * * *
51544992 ATTCTG ATTTTG ATTCTG -TTACCTG ATACTG ATACTG ATTTTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* *
51545041 ATTCTG -TCACCTG ATTCTA ATTCTG ATTCTG ATTCTG ATTCT
1 ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCT
51545083 AGTTCTGGTA
Statistics
Matches: 69, Mismatches: 10, Indels: 12
0.76 0.11 0.13
Matches are distributed among these distances:
5 3 0.04
6 58 0.84
7 6 0.09
8 2 0.03
ACGTcount: A:0.20, C:0.18, G:0.14, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:51545046 original size:37 final size:37
Alignment explanation
Indices: 51544992--51545082 Score: 128
Period size: 37 Copynumber: 2.5 Consensus size: 37
51544982 TTGCATTTAC
* * *
51544992 ATTCTGATTTTGATTCTGTTACCTGATACTGATACTG
1 ATTCTGATTCTGATTCTGTCACCTGATACTAATACTG
* * *
51545029 ATTTTGATTCTGATTCTGTCACCTGATTCTAATTCTG
1 ATTCTGATTCTGATTCTGTCACCTGATACTAATACTG
51545066 ATTCTGATTCTGATTCT
1 ATTCTGATTCTGATTCT
51545083 AGTTCTGGTA
Statistics
Matches: 47, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
37 47 1.00
ACGTcount: A:0.20, C:0.18, G:0.14, T:0.48
Consensus pattern (37 bp):
ATTCTGATTCTGATTCTGTCACCTGATACTAATACTG
Found at i:51545055 original size:31 final size:30
Alignment explanation
Indices: 51544995--51545079 Score: 93
Period size: 31 Copynumber: 2.8 Consensus size: 30
51544985 CATTTACATT
51544995 CTGATTTTGATTCTG-TTACCTGATACTGATA
1 CTGATTTTGATTCTGATT--CTGATACTGATA
*
51545026 CTGATTTTGATTCTGATTCTG-TCACCTGATT
1 CTGATTTTGATTCTGATTCTGAT-A-CTGATA
* *
51545057 CTAATTCTGATTCTGATTCTGAT
1 CTGATTTTGATTCTGATTCTGAT
51545080 TCTAGTTCTG
Statistics
Matches: 47, Mismatches: 3, Indels: 7
0.82 0.05 0.12
Matches are distributed among these distances:
29 1 0.02
30 4 0.09
31 39 0.83
32 3 0.06
ACGTcount: A:0.20, C:0.18, G:0.15, T:0.47
Consensus pattern (30 bp):
CTGATTTTGATTCTGATTCTGATACTGATA
Found at i:51545068 original size:12 final size:12
Alignment explanation
Indices: 51545051--51545089 Score: 60
Period size: 12 Copynumber: 3.2 Consensus size: 12
51545041 ATTCTGTCAC
51545051 CTGATTCTAATT
1 CTGATTCTAATT
*
51545063 CTGATTCTGATT
1 CTGATTCTAATT
*
51545075 CTGATTCTAGTT
1 CTGATTCTAATT
51545087 CTG
1 CTG
51545090 GTAATGTTTC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.18, C:0.18, G:0.15, T:0.49
Consensus pattern (12 bp):
CTGATTCTAATT
Found at i:51558940 original size:25 final size:26
Alignment explanation
Indices: 51558912--51558961 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 26
51558902 AGCATCCTGA
*
51558912 TTAAA-GGCTCTTCGTGAGTTTCCCG
1 TTAAATGGCTCTTCGTGAGCTTCCCG
*
51558937 TTAAATTGGCTCTTTGTGAGCTTCC
1 TTAAA-TGGCTCTTCGTGAGCTTCC
51558962 TGATAGTGCT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 5 0.24
27 16 0.76
ACGTcount: A:0.16, C:0.22, G:0.22, T:0.40
Consensus pattern (26 bp):
TTAAATGGCTCTTCGTGAGCTTCCCG
Found at i:51559072 original size:24 final size:24
Alignment explanation
Indices: 51559020--51559074 Score: 76
Period size: 24 Copynumber: 2.3 Consensus size: 24
51559010 GACATGGTTA
* *
51559020 TTTGTGAACTTCCCTATATGGTTC
1 TTTGTGAACTTCCCGATATGGCTC
51559044 TTTGTGAACTTCCCGATTATGGCTC
1 TTTGTGAACTTCCCGA-TATGGCTC
51559069 -TTGTGA
1 TTTGTGA
51559075 GCTTTCTGCT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
24 21 0.75
25 7 0.25
ACGTcount: A:0.16, C:0.20, G:0.20, T:0.44
Consensus pattern (24 bp):
TTTGTGAACTTCCCGATATGGCTC
Found at i:51565643 original size:16 final size:18
Alignment explanation
Indices: 51565606--51565644 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
51565596 GGCCTCGATC
51565606 GGCCGAAATGGGTCGTGTG
1 GGCCGAAATGGGTCG-GTG
51565625 GGCC-AAATGGGTC-GTG
1 GGCCGAAATGGGTCGGTG
51565641 GGCC
1 GGCC
51565645 CCACACAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
16 7 0.35
18 9 0.45
19 4 0.20
ACGTcount: A:0.15, C:0.21, G:0.46, T:0.18
Consensus pattern (18 bp):
GGCCGAAATGGGTCGGTG
Found at i:51566273 original size:32 final size:32
Alignment explanation
Indices: 51566232--51566307 Score: 98
Period size: 32 Copynumber: 2.4 Consensus size: 32
51566222 TATTGAAATG
* *
51566232 GGCTAGGCCCAACTAATACTGGTTCTGATACA
1 GGCTAGGCCCAACTAATACTGATTCTGAGACA
* * **
51566264 GGCTAGGCCCAACTGATATTGATTCTGAGATG
1 GGCTAGGCCCAACTAATACTGATTCTGAGACA
51566296 GGCTAGGCCCAA
1 GGCTAGGCCCAA
51566308 TTGAGATTAT
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
32 38 1.00
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (32 bp):
GGCTAGGCCCAACTAATACTGATTCTGAGACA
Found at i:51573276 original size:35 final size:35
Alignment explanation
Indices: 51573218--51573284 Score: 93
Period size: 35 Copynumber: 1.9 Consensus size: 35
51573208 TGACATAATT
51573218 GATACATAACAACCATACCATTTTAGCCATTTAAA
1 GATACATAACAACCATACCATTTTAGCCATTTAAA
*
51573253 GATACATTAAC-A-CATACCAATTTTAGTCATTT
1 GATACA-TAACAACCATACC-ATTTTAGCCATTT
51573285 CAAAACATAC
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
34 6 0.21
35 19 0.66
36 4 0.14
ACGTcount: A:0.40, C:0.21, G:0.06, T:0.33
Consensus pattern (35 bp):
GATACATAACAACCATACCATTTTAGCCATTTAAA
Found at i:51574499 original size:18 final size:18
Alignment explanation
Indices: 51574462--51574500 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
51574452 TTGGAAATCA
* **
51574462 AAATTATTAAAAGGTGAT
1 AAATTATTAAAAAGAAAT
51574480 AAATTATTAAAAAGAAAT
1 AAATTATTAAAAAGAAAT
51574498 AAA
1 AAA
51574501 AATCATTTTT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.62, C:0.00, G:0.10, T:0.28
Consensus pattern (18 bp):
AAATTATTAAAAAGAAAT
Found at i:51576454 original size:18 final size:17
Alignment explanation
Indices: 51576417--51576455 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
51576407 CAGATAAATG
* *
51576417 GGCCCACACGTCTGTAT
1 GGCCCACACGCCTATAT
51576434 GGCCCACACGCCTATATT
1 GGCCCACACGCCTATA-T
51576452 GGCC
1 GGCC
51576456 TTCCCCGTGT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 14 0.74
18 5 0.26
ACGTcount: A:0.18, C:0.38, G:0.23, T:0.21
Consensus pattern (17 bp):
GGCCCACACGCCTATAT
Found at i:51576540 original size:17 final size:18
Alignment explanation
Indices: 51576508--51576548 Score: 57
Period size: 17 Copynumber: 2.3 Consensus size: 18
51576498 CCATGTAGCG
51576508 TGCCCATGTGAGCCCACA
1 TGCCCATGTGAGCCCACA
*
51576526 TGCCCGTGT-AGCCCACA
1 TGCCCATGTGAGCCCACA
*
51576543 CGCCCA
1 TGCCCA
51576549 ATCTAGCTTA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
17 12 0.60
18 8 0.40
ACGTcount: A:0.20, C:0.44, G:0.22, T:0.15
Consensus pattern (18 bp):
TGCCCATGTGAGCCCACA
Found at i:51583679 original size:16 final size:17
Alignment explanation
Indices: 51583658--51583691 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
51583648 ACCCGTCTGA
51583658 AATACAAGA-AAATGAT
1 AATACAAGACAAATGAT
*
51583674 AATACATGACAAATGAT
1 AATACAAGACAAATGAT
51583691 A
1 A
51583692 TATGAAAACA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.59, C:0.09, G:0.12, T:0.21
Consensus pattern (17 bp):
AATACAAGACAAATGAT
Found at i:51589493 original size:23 final size:23
Alignment explanation
Indices: 51589449--51589493 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
51589439 AATTTACTTA
*
51589449 CAATATAATCACATATTAACATT
1 CAATATAATCACAAATTAACATT
*
51589472 CAATTTAATCA-AAATTATACAT
1 CAATATAATCACAAATTA-ACAT
51589494 AATACAGTTC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 5 0.26
23 14 0.74
ACGTcount: A:0.49, C:0.16, G:0.00, T:0.36
Consensus pattern (23 bp):
CAATATAATCACAAATTAACATT
Found at i:51592049 original size:40 final size:39
Alignment explanation
Indices: 51591987--51592233 Score: 181
Period size: 40 Copynumber: 6.2 Consensus size: 39
51591977 CAGATGATAA
51591987 CCGGGCTAAGTCCCG-AGAGCATTTGAGCTAGTGGCTAAT-T
1 CCGGGCTAAGTCCCGAAG-GCATTTG-GCTAGT-GCTAATAT
* * *
51592027 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGCTACT-ATAT
1 CCGGGCTAAGTCCCGAAGGCATTTG-GCTAG-TGCTAATAT
* *
51592067 CCGGGCTAAGTCCCGAAGGCGTTT-G-TACGAGCTATTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGGCTA-GTGCTA--ATAT
* * * *
51592107 CCGGGCTAACTCTCGAAGGCATTTGTCTGAGT--TATTAT
1 CCGGGCTAAGTCCCGAAGGCATTTGGCT-AGTGCTAATAT
* * * *
51592145 ACTGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT-ATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTG-GCTAG-TGCTAATAT
51592186 CCGGGCTAAGTCCCGAAGGCATTTGAGCTAGTGGCT-ATAT
1 CCGGGCTAAGTCCCGAAGGCATTTG-GCTAGT-GCTAATAT
51592226 CC-GGCTAA
1 CCGGGCTAA
51592234 ACTCCGAAGG
Statistics
Matches: 164, Mismatches: 27, Indels: 33
0.73 0.12 0.15
Matches are distributed among these distances:
37 3 0.02
38 5 0.03
39 33 0.20
40 114 0.70
41 5 0.03
42 3 0.02
43 1 0.01
ACGTcount: A:0.23, C:0.23, G:0.27, T:0.26
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGGCTAGTGCTAATAT
Found at i:51592171 original size:79 final size:80
Alignment explanation
Indices: 51592026--51592210 Score: 239
Period size: 79 Copynumber: 2.3 Consensus size: 80
51592016 AGTGGCTAAT
* *
51592026 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGCTACTATATCCGGGCTAAGTCCCGAAGGCGTTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATATCCGGGCTAAGTCCCGAAGGCATTT
* *
51592091 GTACGAGCTATTATA
66 GTACAAGCTACTATA
* * * * *
51592106 TCCGGGCTAACTCTCGAAGGCATTTGT-CTGAGTTATTATA-CTGGGCTAAGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGCTACTATATCCGGGCTAAGTCCCGAAGGCATT
* *
51592169 TGTGCAAGTTACTATA
65 TGTACAAGCTACTATA
*
51592185 ACCGGGCTAAGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
51592211 AGCTAGTGGC
Statistics
Matches: 90, Mismatches: 14, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
79 57 0.63
80 33 0.37
ACGTcount: A:0.23, C:0.23, G:0.26, T:0.27
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATATCCGGGCTAAGTCCCGAAGGCATTT
GTACAAGCTACTATA
Found at i:51592225 original size:119 final size:118
Alignment explanation
Indices: 51592029--51592243 Score: 301
Period size: 119 Copynumber: 1.8 Consensus size: 118
51592019 GGCTAATTCC
* * *
51592029 GGGCTAAGTCCCGAAGGCATTCGTGCGAGCTACTATATCCGGGCTAAGTCCCGAAGGCGTTTGTA
1 GGGCTAAGTCCCGAAGGCATTCGTGCAAGCTACTATAACCGGGCTAAGTCCCGAAGGCATTTGTA
*
51592094 CGAGCTATTATATCCGGGCT-AACTCTCGAAGGCATTTGTCTGAGTTATTATACT
66 CGAGCTACTATATCC-GGCTAAACTC-CGAAGGCATTTGTCTGAGTTATTATACT
* *
51592148 GGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTG-A
1 GGGCTAAGTCCCGAAGGCATTCGTGCAAGCTACTATAACCGGGCTAAGTCCCGAAGGCATTTGTA
* *
51592212 GCTAG-TGGCTATATCCGGCTAAACTCCGAAGG
66 -CGAGCT-ACTATATCCGGCTAAACTCCGAAGG
51592244 TACTTGGTTT
Statistics
Matches: 85, Mismatches: 8, Indels: 7
0.85 0.08 0.07
Matches are distributed among these distances:
118 12 0.14
119 73 0.86
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (118 bp):
GGGCTAAGTCCCGAAGGCATTCGTGCAAGCTACTATAACCGGGCTAAGTCCCGAAGGCATTTGTA
CGAGCTACTATATCCGGCTAAACTCCGAAGGCATTTGTCTGAGTTATTATACT
Found at i:51592243 original size:79 final size:77
Alignment explanation
Indices: 51592027--51592233 Score: 209
Period size: 79 Copynumber: 2.6 Consensus size: 77
51592017 GTGGCTAATT
* * *
51592027 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGCTACTATATCCGGGCTAAGTCCCGAAGGCGTTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG-GCTAG-TACTATATCC-GGCTAAGTCCCGAAGGCATTTG
* * *
51592092 TACGAGCTATTATAT
63 TACAAGCTACTATAA
* * * * *
51592107 CCGGGCTAACTCTCGAAGGCATTTGTCTGAGTTATTATA-CTGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGGCT-AG-TACTATATC-CGGCTAAGTCCCGAAGGCATTTG
* *
51592171 TGCAAGTTACTATAA
63 TACAAGCTACTATAA
*
51592186 CCGGGCTAAGTCCCGAAGGCATTTGAGCTAGTGGCTATATCCGGCTAA
1 CCGGGCTAAGTCCCGAAGGCATTTG-GCTAGT-ACTATATCCGGCTAA
51592234 ACTCCGAAGG
Statistics
Matches: 102, Mismatches: 20, Indels: 11
0.77 0.15 0.08
Matches are distributed among these distances:
78 1 0.01
79 68 0.67
80 33 0.32
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.27
Consensus pattern (77 bp):
CCGGGCTAAGTCCCGAAGGCATTTGGCTAGTACTATATCCGGCTAAGTCCCGAAGGCATTTGTAC
AAGCTACTATAA
Found at i:51600920 original size:40 final size:39
Alignment explanation
Indices: 51600755--51600938 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
51600745 AAATTGAATG
* * *
51600755 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
51600795 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
51600835 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
51600875 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
51600914 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
51600939 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:51600963 original size:80 final size:81
Alignment explanation
Indices: 51600795--51600983 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
51600785 GCTGGAAATT
* * * *
51600795 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
51600860 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
51600876 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
51600939 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
51600955 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
51600984 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:51609037 original size:40 final size:39
Alignment explanation
Indices: 51608872--51609055 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
51608862 AAATTGAATG
* * *
51608872 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
51608912 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
51608952 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
51608992 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
51609031 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
51609056 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:51609080 original size:80 final size:81
Alignment explanation
Indices: 51608912--51609100 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
51608902 GCTGGAAATT
* * * *
51608912 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
51608977 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
51608993 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
51609056 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
51609072 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
51609101 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:51612209 original size:40 final size:40
Alignment explanation
Indices: 51612154--51612400 Score: 244
Period size: 40 Copynumber: 6.2 Consensus size: 40
51612144 CGGATGATAA
* *
51612154 CCGGGCTAAGTCCCG-AGAGCATTTGAGCTAGTGGCTAAT-T
1 CCGGGCTAAGTCCCGAAG-GCATTTGTGCGAGT-GCTAATAT
* *
51612194 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGCTACT-ATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TGCTAATAT
*
51612234 CCGGGCTAAGTCCCGAAGGCGTTTGTGCGA--GCTATTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGCTA--ATAT
* *
51612274 CCGGGCTAAGTCCCGAAGGCATTTGTCCGAGT--TATTAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGCTAATAT
* * *
51612312 ACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT-ATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TGCTAATAT
* *
51612353 CCGGGCTAAGTCCCGAAGGCATTTGAGCTAGTGGCT-ATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT-GCTAATAT
51612393 CC-GGCTAA
1 CCGGGCTAA
51612401 ACTCCGAAGG
Statistics
Matches: 176, Mismatches: 18, Indels: 27
0.80 0.08 0.12
Matches are distributed among these distances:
37 2 0.01
38 3 0.02
39 38 0.22
40 127 0.72
41 5 0.03
42 1 0.01
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGCTAATAT
Found at i:51612338 original size:79 final size:80
Alignment explanation
Indices: 51612154--51612377 Score: 285
Period size: 80 Copynumber: 2.8 Consensus size: 80
51612144 CGGATGATAA
* * *
51612154 CCGGGCTAAGTCCCG-AGAGCATTTGAGCTAG-TGGCTA-ATTCCGGGCTAAGTCCCGAAGGCAT
1 CCGGGCTAAGTCCCGAAG-GCATTTGTGCAAGCT-ACTATA-TCCGGGCTAAGTCCCGAAGGCAT
* *
51612216 TCGTGCGAGCTACTATAT
63 TTGTCCGAGCTACTATAT
* * *
51612234 CCGGGCTAAGTCCCGAAGGCGTTTGTGCGAGCTATTATATCCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGCTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
* *
51612299 TCCGAGTTATTATA-
66 TCCGAGCTACTATAT
* *
51612313 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGCTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
51612378 AGCTAGTGGC
Statistics
Matches: 127, Mismatches: 14, Indels: 7
0.86 0.09 0.05
Matches are distributed among these distances:
79 60 0.47
80 63 0.50
81 4 0.03
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGCTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
TCCGAGCTACTATAT
Found at i:51612410 original size:79 final size:79
Alignment explanation
Indices: 51612194--51612400 Score: 274
Period size: 79 Copynumber: 2.6 Consensus size: 79
51612184 GTGGCTAATT
* *
51612194 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGCTACTATATCCGGGCTAAGTCCCGAAGGCGTTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATATCCGGGCTAAGTCCCGAAGGCATTTG
* * *
51612259 TGCGAGCTATTATAT
65 TGCAAGCTACTATAA
* *
51612274 CCGGGCTAAGTCCCGAAGGCATTTGTCCGAGTTATTATA-CCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATATCCGGGCTAAGTCCCGAAGGCATTTG
*
51612338 TGCAAGTTACTATAA
65 TGCAAGCTACTATAA
* * *
51612353 CCGGGCTAAGTCCCGAAGGCATTTGAGCTAGTGGCTATATCC-GGCTAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT-ACTATATCCGGGCTAA
51612401 ACTCCGAAGG
Statistics
Matches: 111, Mismatches: 14, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
78 1 0.01
79 73 0.66
80 37 0.33
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTACTATATCCGGGCTAAGTCCCGAAGGCATTTGT
GCAAGCTACTATAA
Found at i:51618365 original size:46 final size:46
Alignment explanation
Indices: 51618314--51618537 Score: 281
Period size: 46 Copynumber: 4.8 Consensus size: 46
51618304 GATATTTGGG
* *
51618314 CATCCGAACTCATTGAGTTAAGTCCGAGTTCACTTATGGATGCGAA
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
51618360 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
* * * * * * *
51618406 CGTCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGAAATGTA-ACTAGG
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACT--TATGGATGCGA-A
*
51618453 CATCTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
** * *
51618499 CGCCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
51618538 GCGGGTTACA
Statistics
Matches: 151, Mismatches: 22, Indels: 10
0.83 0.12 0.05
Matches are distributed among these distances:
45 1 0.01
46 114 0.75
47 35 0.23
48 1 0.01
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (46 bp):
CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
Found at i:51618484 original size:93 final size:93
Alignment explanation
Indices: 51618360--51618530 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
51618350 TGGATGCGAA
*
51618360 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGTT
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGTT
51618425 GAGTCCGAGTTCGTGAAATGTAACTAGG
66 GAGTCCGAGTTCGTGAAATGTAACTAGG
* *
51618453 CATCTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGTT
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGTT
51618518 GAGTCCGAGTTCG
66 GAGTCCGAGTTCG
51618531 CTTATGGGCG
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGTT
GAGTCCGAGTTCGTGAAATGTAACTAGG
Found at i:51620320 original size:31 final size:31
Alignment explanation
Indices: 51620282--51620343 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
51620272 CCCTAGGAGA
51620282 GAGAAAGAAAACTAATCAAGCTTAATTAGGT
1 GAGAAAGAAAACTAATCAAGCTTAATTAGGT
51620313 GAGAAAGAAAACTAATCAAGCTTAATTAGGT
1 GAGAAAGAAAACTAATCAAGCTTAATTAGGT
51620344 ATGTTTTCTT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.48, C:0.10, G:0.19, T:0.23
Consensus pattern (31 bp):
GAGAAAGAAAACTAATCAAGCTTAATTAGGT
Found at i:51621225 original size:21 final size:21
Alignment explanation
Indices: 51621201--51621249 Score: 55
Period size: 21 Copynumber: 2.4 Consensus size: 21
51621191 TCAATTAGGG
*
51621201 ATTAAATTGTAAAAATGTGAA
1 ATTAAATGGTAAAAATGTGAA
** *
51621222 ATTATGTGGTTAAAATGTGAA
1 ATTAAATGGTAAAAATGTGAA
51621243 A-TAAATG
1 ATTAAATG
51621250 TGAAATATGG
Statistics
Matches: 22, Mismatches: 6, Indels: 1
0.76 0.21 0.03
Matches are distributed among these distances:
20 4 0.18
21 18 0.82
ACGTcount: A:0.47, C:0.00, G:0.18, T:0.35
Consensus pattern (21 bp):
ATTAAATGGTAAAAATGTGAA
Found at i:51621775 original size:43 final size:44
Alignment explanation
Indices: 51621727--51621894 Score: 164
Period size: 43 Copynumber: 3.9 Consensus size: 44
51621717 TACGGAGATG
*
51621727 TGATTACATGTAAGACCATGCCTGGGACATTGGCATTGTAT-TT
1 TGATTACATGTAAGACCATGTCTGGGACATTGGCATTGTATATT
** * *
51621770 TGATTATGTGTAAGACCATGTCTGGGATATTGGCATTGT-TAAT
1 TGATTACATGTAAGACCATGTCTGGGACATTGGCATTGTATATT
* * * * * * *
51621813 TGATTTCGTGTAAGACCCTGTTTGGGACAGTGGCATCG-ATATG
1 TGATTACATGTAAGACCATGTCTGGGACATTGGCATTGTATATT
* * * *
51621856 TGATAACATGTATGACCATATCTGGGATA-TGGCATTGTA
1 TGATTACATGTAAGACCATGTCTGGGACATTGGCATTGTA
51621895 CGAGCAATAT
Statistics
Matches: 99, Mismatches: 23, Indels: 6
0.77 0.18 0.05
Matches are distributed among these distances:
42 8 0.08
43 91 0.92
ACGTcount: A:0.26, C:0.14, G:0.26, T:0.35
Consensus pattern (44 bp):
TGATTACATGTAAGACCATGTCTGGGACATTGGCATTGTATATT
Found at i:51622756 original size:17 final size:17
Alignment explanation
Indices: 51622734--51622767 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
51622724 AAATGTGTAT
51622734 GAATTGGCATGTTTTGG
1 GAATTGGCATGTTTTGG
51622751 GAATTGGCATGTTTTGG
1 GAATTGGCATGTTTTGG
51622768 CTGCCTATAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.18, C:0.06, G:0.35, T:0.41
Consensus pattern (17 bp):
GAATTGGCATGTTTTGG
Found at i:51631203 original size:29 final size:29
Alignment explanation
Indices: 51631169--51631273 Score: 86
Period size: 29 Copynumber: 3.6 Consensus size: 29
51631159 TACTCAATTT
* * *
51631169 CGCACACTTAGTGCCATGCGATTTAAGCC
1 CGCACACTTAGTGCCATACCATTCAAGCC
** * * *
51631198 CGCACACACAGTGCCATACCCTTCGAGCT
1 CGCACACTTAGTGCCATACCATTCAAGCC
* * *
51631227 CGCACACTTAGTGCCATA-TATTTCCAGCA
1 CGCACACTTAGTGCCATACCA-TTCAAGCC
*
51631256 TGCACACTTAGTGCCATA
1 CGCACACTTAGTGCCATA
51631274 TATTTCCAGC
Statistics
Matches: 60, Mismatches: 15, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
29 60 1.00
ACGTcount: A:0.26, C:0.33, G:0.17, T:0.24
Consensus pattern (29 bp):
CGCACACTTAGTGCCATACCATTCAAGCC
Found at i:51631261 original size:58 final size:59
Alignment explanation
Indices: 51631207--51631329 Score: 178
Period size: 58 Copynumber: 2.1 Consensus size: 59
51631197 CCGCACACAC
* *
51631207 AGTGCCATACCCTTCGAGC-TCGCACACTTAGTGCCATATATTTCCAGCATGCACACTT
1 AGTGCCATACACTTCCAGCATCGCACACTTAGTGCCATATATTTCCAGCATGCACACTT
* * * *
51631265 AGTGCCATATATTTCCAGCAT-GCACACTCAGTGCCATATTTTTCCAGCATGCACACTT
1 AGTGCCATACACTTCCAGCATCGCACACTTAGTGCCATATATTTCCAGCATGCACACTT
51631323 AGTGCCA
1 AGTGCCA
51631330 ATCTCGTCAC
Statistics
Matches: 58, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
58 57 0.98
59 1 0.02
ACGTcount: A:0.25, C:0.31, G:0.15, T:0.28
Consensus pattern (59 bp):
AGTGCCATACACTTCCAGCATCGCACACTTAGTGCCATATATTTCCAGCATGCACACTT
Found at i:51631274 original size:29 final size:29
Alignment explanation
Indices: 51631228--51631329 Score: 186
Period size: 29 Copynumber: 3.5 Consensus size: 29
51631218 CTTCGAGCTC
51631228 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
51631257 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
* *
51631286 GCACACTCAGTGCCATATTTTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
51631315 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
51631330 ATCTCGTCAC
Statistics
Matches: 70, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 70 1.00
ACGTcount: A:0.26, C:0.29, G:0.15, T:0.29
Consensus pattern (29 bp):
GCACACTTAGTGCCATATATTTCCAGCAT
Found at i:51633956 original size:41 final size:41
Alignment explanation
Indices: 51633911--51634028 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
51633901 TGAAAGATAA
51633911 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
51633952 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
51633982 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
51634023 ATGTAG
1 ATGTAG
51634029 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:51633967 original size:71 final size:71
Alignment explanation
Indices: 51633879--51634042 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
51633869 GAGATGTATC
51633879 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
51633944 AGGACA
66 AGGACA
51633950 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
51634015 AGGACA
66 AGGACA
51634021 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
51634043 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:51641392 original size:41 final size:41
Alignment explanation
Indices: 51641347--51641464 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
51641337 TGAAAGATAA
51641347 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
51641388 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
51641418 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
51641459 ATGTAG
1 ATGTAG
51641465 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:51641403 original size:71 final size:71
Alignment explanation
Indices: 51641315--51641478 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
51641305 GAGATGTATC
51641315 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
51641380 AGGACA
66 AGGACA
51641386 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
51641451 AGGACA
66 AGGACA
51641457 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
51641479 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:51644693 original size:5 final size:5
Alignment explanation
Indices: 51644683--51644750 Score: 136
Period size: 5 Copynumber: 13.6 Consensus size: 5
51644673 TTTATTCATT
51644683 TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA
1 TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA
51644733 TATTA TATTA TATTA TAT
1 TATTA TATTA TATTA TAT
51644751 ATAAAATTTA
Statistics
Matches: 63, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 63 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (5 bp):
TATTA
Found at i:51649788 original size:35 final size:35
Alignment explanation
Indices: 51649749--51649815 Score: 89
Period size: 35 Copynumber: 1.9 Consensus size: 35
51649739 AGATATACTC
** *
51649749 GTCTAAGGCAATTTTAAAAAGGCTGGGATAGATAA
1 GTCTAAGGCAACCTCAAAAAGGCTGGGATAGATAA
* *
51649784 GTCTAAGGTAACCTCAAAAAGGTTGGGATAGA
1 GTCTAAGGCAACCTCAAAAAGGCTGGGATAGA
51649816 AAGATTGGGA
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
35 27 1.00
ACGTcount: A:0.39, C:0.10, G:0.27, T:0.24
Consensus pattern (35 bp):
GTCTAAGGCAACCTCAAAAAGGCTGGGATAGATAA
Found at i:51651338 original size:16 final size:17
Alignment explanation
Indices: 51651317--51651351 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
51651307 TCTTCTTGTA
51651317 TTTCATGTAATA-TTCC
1 TTTCATGTAATATTTCC
*
51651333 TTTCATGTCATATTTCC
1 TTTCATGTAATATTTCC
51651350 TT
1 TT
51651352 ACCACATATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 11 0.65
17 6 0.35
ACGTcount: A:0.20, C:0.20, G:0.06, T:0.54
Consensus pattern (17 bp):
TTTCATGTAATATTTCC
Found at i:51664376 original size:22 final size:22
Alignment explanation
Indices: 51664348--51664402 Score: 92
Period size: 22 Copynumber: 2.5 Consensus size: 22
51664338 ACAAAGGCAT
51664348 ACGCCCGTGTGGGAGGGGAAAC
1 ACGCCCGTGTGGGAGGGGAAAC
*
51664370 ACGCCCGTGTGGGAGGGGCAAC
1 ACGCCCGTGTGGGAGGGGAAAC
*
51664392 ACACCCGTGTG
1 ACGCCCGTGTG
51664403 ACCATTCCAA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
22 31 1.00
ACGTcount: A:0.20, C:0.27, G:0.42, T:0.11
Consensus pattern (22 bp):
ACGCCCGTGTGGGAGGGGAAAC
Found at i:51665553 original size:71 final size:71
Alignment explanation
Indices: 51665437--51665578 Score: 221
Period size: 71 Copynumber: 2.0 Consensus size: 71
51665427 ACACGGTTAT
* * *
51665437 ACTTTCCTCATTAACTGGAAATCAAAACTTCCACATTGAACCATTCAGAATGTTATCGGATATAC
1 ACTTTCCTCATTAACTAGAAATCAAAACTTCCACATTGAACCATTCAGAATGCTATCAGATATAC
51665502 CATAGC
66 CATAGC
* * * *
51665508 ACTTTCCTCATTAACTAGAAATCAGAACTTCCACGTTGAACCATTCGGAGTGCTATCAGATATAC
1 ACTTTCCTCATTAACTAGAAATCAAAACTTCCACATTGAACCATTCAGAATGCTATCAGATATAC
51665573 CATAGC
66 CATAGC
51665579 CTCGAACATG
Statistics
Matches: 64, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
71 64 1.00
ACGTcount: A:0.34, C:0.25, G:0.13, T:0.29
Consensus pattern (71 bp):
ACTTTCCTCATTAACTAGAAATCAAAACTTCCACATTGAACCATTCAGAATGCTATCAGATATAC
CATAGC
Found at i:51665677 original size:47 final size:46
Alignment explanation
Indices: 51665608--51665817 Score: 171
Period size: 47 Copynumber: 4.5 Consensus size: 46
51665598 GCCGATACCG
* *
51665608 TGTCCCAGACACGGTCTTACACTGGCTTACATCTC-AAGTCGAAGCCA
1 TGTCCCAGACA-TGTCTTACACTGGCCTACATCTCGAAGTCGAAG-CA
* * *
51665655 TGTCCCAGACATGATCTTACACT-GCCTATCATCTCGCAGCCGACGCA
1 TGTCCCAGACATG-TCTTACACTGGCCTA-CATCTCGAAGTCGAAGCA
* ** * *
51665702 TGTCCCAGACATGTCTTACACTGGCTTATGTCTCGACG-CTGATGCA
1 TGTCCCAGACATGTCTTACACTGGCCTACATCTCGAAGTC-GAAGCA
* *
51665748 TGTCCTAGACATGTCTTACACTAGCACT-CATCTC-AATGTC-AATGCCA
1 TGTCCCAGACATGTCTTACACTGGC-CTACATCTCGAA-GTCGAA-G-CA
*
51665795 TGTCCCAAACATGGTCTTACACT
1 TGTCCCAGACAT-GTCTTACACT
51665818 AGCTCTCACA
Statistics
Matches: 132, Mismatches: 20, Indels: 21
0.76 0.12 0.12
Matches are distributed among these distances:
45 3 0.02
46 54 0.41
47 59 0.45
48 16 0.12
ACGTcount: A:0.24, C:0.31, G:0.17, T:0.27
Consensus pattern (46 bp):
TGTCCCAGACATGTCTTACACTGGCCTACATCTCGAAGTCGAAGCA
Found at i:51665736 original size:46 final size:45
Alignment explanation
Indices: 51665608--51665769 Score: 173
Period size: 46 Copynumber: 3.5 Consensus size: 45
51665598 GCCGATACCG
* * * *
51665608 TGTCCCAGACACGGTCTTACACTGGCTTACATCTCAAGTCGAAGCCA
1 TGTCCCAGACA-TGTCTTACACTGGCTTATATCTCGAGCCGAAG-CA
* *
51665655 TGTCCCAGACATGATCTTACACT-GCCTATCATCTCGCAGCCGACGCA
1 TGTCCCAGACATG-TCTTACACTGGCTTAT-ATCTCG-AGCCGAAGCA
* * *
51665702 TGTCCCAGACATGTCTTACACTGGCTTATGTCTCGACGCTGATGCA
1 TGTCCCAGACATGTCTTACACTGGCTTATATCTCGA-GCCGAAGCA
*
51665748 TGTCCTAGACATGTCTTACACT
1 TGTCCCAGACATGTCTTACACT
51665770 AGCACTCATC
Statistics
Matches: 99, Mismatches: 11, Indels: 11
0.82 0.09 0.09
Matches are distributed among these distances:
45 1 0.01
46 47 0.47
47 45 0.45
48 6 0.06
ACGTcount: A:0.23, C:0.31, G:0.19, T:0.27
Consensus pattern (45 bp):
TGTCCCAGACATGTCTTACACTGGCTTATATCTCGAGCCGAAGCA
Found at i:51668052 original size:39 final size:40
Alignment explanation
Indices: 51667970--51668223 Score: 376
Period size: 39 Copynumber: 6.5 Consensus size: 40
51667960 CGGATGATAA
* *
51667970 CGGGCTAAGTCCC-AAGGCATTTGTGCTAGTGACTA-ATTC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-TC
*
51668009 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-ATT
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
51668048 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
51668088 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
**
51668128 CGGGCTAAGT-CCGAAGGCATTTGTGCGAACTACTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
*
51668167 CGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATC
* *
51668207 C-GGTTAAATCCCGAAGG
1 CGGGCTAAGTCCCGAAGG
51668224 TACTTGGTTT
Statistics
Matches: 201, Mismatches: 10, Indels: 8
0.92 0.05 0.04
Matches are distributed among these distances:
39 103 0.51
40 98 0.49
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
Found at i:51668100 original size:79 final size:80
Alignment explanation
Indices: 51667970--51668223 Score: 376
Period size: 79 Copynumber: 3.2 Consensus size: 80
51667960 CGGATGATAA
* *
51667970 CGGGCTAAGTCCC-AAGGCATTTGTGCTAGTGACTA-ATTCCGGGCTAAGTCCCGAAGGCATTTG
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-TCCGGGCTAAGTCCCGAAGGCATTTG
*
51668033 TGCGAGTTACTA-ATT
65 TGCGAGTTACTATATC
51668048 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGT
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGT
51668113 GCGAGTTACTATATC
66 GCGAGTTACTATATC
** *
51668128 CGGGCTAAGT-CCGAAGGCATTTGTGCGAACTACTATATCCGGGCTAAGTCCCGAAGGCATTTGA
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGT
51668192 GCGAG-TAGCTATATC
66 GCGAGTTA-CTATATC
* *
51668207 C-GGTTAAATCCCGAAGG
1 CGGGCTAAGTCCCGAAGG
51668224 TACTTGGTTT
Statistics
Matches: 163, Mismatches: 8, Indels: 9
0.91 0.04 0.05
Matches are distributed among these distances:
78 21 0.13
79 129 0.79
80 13 0.08
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (80 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGT
GCGAGTTACTATATC
Found at i:51676072 original size:40 final size:40
Alignment explanation
Indices: 51676017--51676259 Score: 384
Period size: 40 Copynumber: 6.1 Consensus size: 40
51676007 CGGATGATAA
* *
51676017 CGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATTC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-TC
51676057 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-ATTC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-TC
51676097 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
51676137 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
* **
51676177 CGGGCTAAGTCCCGAAGGCATTTGTACGAACTACTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
*
51676217 CGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATC
51676257 CGG
1 CGG
51676260 TTAAATCCGA
Statistics
Matches: 193, Mismatches: 8, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
39 2 0.01
40 190 0.98
41 1 0.01
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
Found at i:51684299 original size:46 final size:46
Alignment explanation
Indices: 51684235--51684355 Score: 154
Period size: 46 Copynumber: 2.6 Consensus size: 46
51684225 ACCCATAAAC
* * * *
51684235 GAACTCGAACTCAGCTCAACGTGCTCAGG-CTTTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGCTC-GGACATTCGCATCCATAAGT
* * *
51684281 GAACTTGTACTCAACTCAACGAGCTCGGACATTCTCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGT
*
51684327 GAACTCGGACTCGACTCAACGAGCTCGGA
1 GAACTCGGACTCAACTCAACGAGCTCGGA
51684356 TGCCCAAATA
Statistics
Matches: 65, Mismatches: 9, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
45 2 0.03
46 63 0.97
ACGTcount: A:0.28, C:0.30, G:0.20, T:0.22
Consensus pattern (46 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGT
Found at i:51687156 original size:46 final size:46
Alignment explanation
Indices: 51687033--51687157 Score: 223
Period size: 46 Copynumber: 2.7 Consensus size: 46
51687023 TAGGCATCCG
*
51687033 AGCTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCGAACGCCCA
1 AGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCA
51687079 AGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCA
1 AGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCA
* *
51687125 AGCTCGTTGAGTTGAGTCTGAGTTCGCTTATGG
1 AGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
51687158 GCGGGTTACA
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.29
Consensus pattern (46 bp):
AGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCA
Found at i:51706080 original size:16 final size:16
Alignment explanation
Indices: 51706059--51706090 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
51706049 TAACAAGGCA
51706059 AATCAATTAGGTACTT
1 AATCAATTAGGTACTT
51706075 AATCAATTAGGTACTT
1 AATCAATTAGGTACTT
51706091 TTGCATTCTC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.38, C:0.12, G:0.12, T:0.38
Consensus pattern (16 bp):
AATCAATTAGGTACTT
Found at i:51706454 original size:22 final size:22
Alignment explanation
Indices: 51706421--51706470 Score: 57
Period size: 22 Copynumber: 2.3 Consensus size: 22
51706411 TAACATGTGT
*
51706421 CACATATATCATGAGCTTAGAC
1 CACATATATCATGAGCTCAGAC
*
51706443 CACATA-ACTCATTAGCTCAGAC
1 CACATATA-TCATGAGCTCAGAC
*
51706465 CGCATA
1 CACATA
51706471 GTCCCTAGAG
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
21 1 0.04
22 23 0.96
ACGTcount: A:0.36, C:0.28, G:0.12, T:0.24
Consensus pattern (22 bp):
CACATATATCATGAGCTCAGAC
Found at i:51714673 original size:29 final size:29
Alignment explanation
Indices: 51714631--51714789 Score: 300
Period size: 29 Copynumber: 5.4 Consensus size: 29
51714621 AAAATTGTAC
*
51714631 AGCACTAAGTGTGCGAACTGAAAATATAT
1 AGCACTAAGTGTGCGAGCTGAAAATATAT
51714660 AGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAGCTGAAAATATAT
51714689 AGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAGCTGAAAATATAT
51714718 AGCACTAAGTGTGCGAGCTGAAAATTATAT
1 AGCACTAAGTGTGCGAGCTGAAAA-TATAT
51714748 AGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAGCTGAAAATATAT
51714777 AGCACTAAGTGTG
1 AGCACTAAGTGTG
51714790 GATTCACTAT
Statistics
Matches: 128, Mismatches: 1, Indels: 2
0.98 0.01 0.02
Matches are distributed among these distances:
29 99 0.77
30 29 0.23
ACGTcount: A:0.38, C:0.14, G:0.24, T:0.25
Consensus pattern (29 bp):
AGCACTAAGTGTGCGAGCTGAAAATATAT
Found at i:51714702 original size:58 final size:59
Alignment explanation
Indices: 51714601--51714789 Score: 308
Period size: 58 Copynumber: 3.2 Consensus size: 59
51714591 GACAAGATTG
* * * * * *
51714601 GCACTAAGTGTGCGGGTTTAAAAATTGTACAGCACTAAGTGTGCGAACTGAAAATATATA
1 GCACTAAGTGTGCGAG-CTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATATA
51714661 GCACTAAGTGTGCGAGCTGAAAA-TATATAGCACTAAGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATATA
51714719 GCACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATATA
51714778 GCACTAAGTGTG
1 GCACTAAGTGTG
51714790 GATTCACTAT
Statistics
Matches: 122, Mismatches: 6, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
58 55 0.45
59 52 0.43
60 15 0.12
ACGTcount: A:0.37, C:0.14, G:0.24, T:0.25
Consensus pattern (59 bp):
GCACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATATA
Found at i:51722287 original size:58 final size:59
Alignment explanation
Indices: 51722186--51722376 Score: 312
Period size: 58 Copynumber: 3.2 Consensus size: 59
51722176 GACAAGATTG
* * * * * *
51722186 GCACTAAGTGTGCGGGTTTAAAAATTGTACAGCACTAAGTGTGCGAACTGAAAATATATA
1 GCACTAAGTGTGCGAG-CTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATATA
51722246 GCACTAAGTGTGCGAGCTGAAAA-TATATAGCACTAAGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATATA
51722304 GCACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATATA
51722363 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
51722377 GATTCACTAT
Statistics
Matches: 124, Mismatches: 6, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
58 55 0.44
59 54 0.44
60 15 0.12
ACGTcount: A:0.36, C:0.14, G:0.25, T:0.25
Consensus pattern (59 bp):
GCACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATATA
Found at i:51722346 original size:88 final size:87
Alignment explanation
Indices: 51722216--51722376 Score: 304
Period size: 88 Copynumber: 1.8 Consensus size: 87
51722206 AAAATTGTAC
51722216 AGCACTAAGTGTGCGAACTGAAAATATATAGCACTAAGTGTGCGAGCTGAAAATATATAGCACTA
1 AGCACTAAGTGTGCGAACTGAAAATATATAGCACTAAGTGTGCGAGCTGAAAATATATAGCACTA
51722281 AGTGTGCGAGCTGAAAATATAT
66 AGTGTGCGAGCTGAAAATATAT
*
51722303 AGCACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATATAGCACT
1 AGCACTAAGTGTGCGAACTGAAAA-TATATAGCACTAAGTGTGCGAGCTGAAAATATATAGCACT
51722368 AAGTGTGCG
65 AAGTGTGCG
51722377 GATTCACTAT
Statistics
Matches: 72, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
87 23 0.32
88 49 0.68
ACGTcount: A:0.37, C:0.14, G:0.24, T:0.24
Consensus pattern (87 bp):
AGCACTAAGTGTGCGAACTGAAAATATATAGCACTAAGTGTGCGAGCTGAAAATATATAGCACTA
AGTGTGCGAGCTGAAAATATAT
Found at i:51722388 original size:29 final size:29
Alignment explanation
Indices: 51722216--51722376 Score: 304
Period size: 29 Copynumber: 5.5 Consensus size: 29
51722206 AAAATTGTAC
*
51722216 AGCACTAAGTGTGCGAACTGAAAATATAT
1 AGCACTAAGTGTGCGAGCTGAAAATATAT
51722245 AGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAGCTGAAAATATAT
51722274 AGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAGCTGAAAATATAT
51722303 AGCACTAAGTGTGCGAGCTGAAAATTATAT
1 AGCACTAAGTGTGCGAGCTGAAAA-TATAT
51722333 AGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAGCTGAAAATATAT
51722362 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
51722377 GATTCACTAT
Statistics
Matches: 130, Mismatches: 1, Indels: 2
0.98 0.01 0.02
Matches are distributed among these distances:
29 101 0.78
30 29 0.22
ACGTcount: A:0.37, C:0.14, G:0.24, T:0.24
Consensus pattern (29 bp):
AGCACTAAGTGTGCGAGCTGAAAATATAT
Found at i:51730904 original size:29 final size:29
Alignment explanation
Indices: 51730785--51730968 Score: 284
Period size: 28 Copynumber: 6.4 Consensus size: 29
51730775 GACAAGATTG
* * * * *
51730785 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGCTGAAAA-TATATA
*
51730815 GCACTAAGTGTGCGAACTG-AAATATATA
1 GCACTAAGTGTGCGAGCTGAAAATATATA
51730843 GCACTAAGTGTGCGAGCTG-AAATATATA
1 GCACTAAGTGTGCGAGCTGAAAATATATA
51730871 GCACTAAGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCGAGCTGAAAATATATA
51730900 GCACTAAGTGTGCGAGCTGAAAAT-TATA
1 GCACTAAGTGTGCGAGCTGAAAATATATA
51730928 GCACTAAGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCGAGCTGAAAATATATA
51730957 GCACTAAGTGTG
1 GCACTAAGTGTG
51730969 TGGATTCACT
Statistics
Matches: 145, Mismatches: 7, Indels: 5
0.92 0.04 0.03
Matches are distributed among these distances:
28 78 0.54
29 52 0.36
30 15 0.10
ACGTcount: A:0.35, C:0.14, G:0.25, T:0.26
Consensus pattern (29 bp):
GCACTAAGTGTGCGAGCTGAAAATATATA
Found at i:51730912 original size:57 final size:57
Alignment explanation
Indices: 51730785--51730968 Score: 282
Period size: 57 Copynumber: 3.2 Consensus size: 57
51730775 GACAAGATTG
* * * * *
51730785 GCACTAAGTGTGCGGGTTTAAAATTGTACAGCACTAAGTGTGCGAACTG-AAATATATA
1 GCACTAAGTGTGCGAGCTGAAAA-T-TATAGCACTAAGTGTGCGAGCTGAAAATATATA
51730843 GCACTAAGTGTGCGAGCTG-AAATATATAGCACTAAGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCGAGCTGAAAAT-TATAGCACTAAGTGTGCGAGCTGAAAATATATA
51730900 GCACTAAGTGTGCGAGCTGAAAATTATAGCACTAAGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATAGCACTAAGTGTGCGAGCTGAAAATATATA
51730957 GCACTAAGTGTG
1 GCACTAAGTGTG
51730969 TGGATTCACT
Statistics
Matches: 118, Mismatches: 6, Indels: 5
0.91 0.05 0.04
Matches are distributed among these distances:
56 22 0.19
57 76 0.64
58 20 0.17
ACGTcount: A:0.35, C:0.14, G:0.25, T:0.26
Consensus pattern (57 bp):
GCACTAAGTGTGCGAGCTGAAAATTATAGCACTAAGTGTGCGAGCTGAAAATATATA
Found at i:51738422 original size:58 final size:59
Alignment explanation
Indices: 51738321--51738511 Score: 312
Period size: 58 Copynumber: 3.2 Consensus size: 59
51738311 GACAAGATTG
* * * * * *
51738321 GCACTAAGTGTGCGGGTTTAAAAATTGTACAGCACTAAGTGTGCGAACTGAAAATATATA
1 GCACTAAGTGTGCGAG-CTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATATA
51738381 GCACTAAGTGTGCGAGCTGAAAA-TATATAGCACTAAGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATATA
51738439 GCACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATATA
51738498 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
51738512 GATTCACTAT
Statistics
Matches: 124, Mismatches: 6, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
58 55 0.44
59 54 0.44
60 15 0.12
ACGTcount: A:0.36, C:0.14, G:0.25, T:0.25
Consensus pattern (59 bp):
GCACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATATA
Found at i:51738481 original size:88 final size:87
Alignment explanation
Indices: 51738351--51738511 Score: 304
Period size: 88 Copynumber: 1.8 Consensus size: 87
51738341 AAAATTGTAC
51738351 AGCACTAAGTGTGCGAACTGAAAATATATAGCACTAAGTGTGCGAGCTGAAAATATATAGCACTA
1 AGCACTAAGTGTGCGAACTGAAAATATATAGCACTAAGTGTGCGAGCTGAAAATATATAGCACTA
51738416 AGTGTGCGAGCTGAAAATATAT
66 AGTGTGCGAGCTGAAAATATAT
*
51738438 AGCACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATATAGCACT
1 AGCACTAAGTGTGCGAACTGAAAA-TATATAGCACTAAGTGTGCGAGCTGAAAATATATAGCACT
51738503 AAGTGTGCG
65 AAGTGTGCG
51738512 GATTCACTAT
Statistics
Matches: 72, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
87 23 0.32
88 49 0.68
ACGTcount: A:0.37, C:0.14, G:0.24, T:0.24
Consensus pattern (87 bp):
AGCACTAAGTGTGCGAACTGAAAATATATAGCACTAAGTGTGCGAGCTGAAAATATATAGCACTA
AGTGTGCGAGCTGAAAATATAT
Found at i:51738523 original size:29 final size:29
Alignment explanation
Indices: 51738351--51738511 Score: 304
Period size: 29 Copynumber: 5.5 Consensus size: 29
51738341 AAAATTGTAC
*
51738351 AGCACTAAGTGTGCGAACTGAAAATATAT
1 AGCACTAAGTGTGCGAGCTGAAAATATAT
51738380 AGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAGCTGAAAATATAT
51738409 AGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAGCTGAAAATATAT
51738438 AGCACTAAGTGTGCGAGCTGAAAATTATAT
1 AGCACTAAGTGTGCGAGCTGAAAA-TATAT
51738468 AGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAGCTGAAAATATAT
51738497 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
51738512 GATTCACTAT
Statistics
Matches: 130, Mismatches: 1, Indels: 2
0.98 0.01 0.02
Matches are distributed among these distances:
29 101 0.78
30 29 0.22
ACGTcount: A:0.37, C:0.14, G:0.24, T:0.24
Consensus pattern (29 bp):
AGCACTAAGTGTGCGAGCTGAAAATATAT
Found at i:51744636 original size:20 final size:20
Alignment explanation
Indices: 51744611--51744648 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
51744601 ACTTAATCGA
*
51744611 GACTTTTGAAGATTTTTCAT
1 GACTTTTGAAAATTTTTCAT
*
51744631 GACTTTTTAAAATTTTTC
1 GACTTTTGAAAATTTTTC
51744649 CAAGGTGCAG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.26, C:0.11, G:0.11, T:0.53
Consensus pattern (20 bp):
GACTTTTGAAAATTTTTCAT
Found at i:51748557 original size:42 final size:42
Alignment explanation
Indices: 51748444--51748567 Score: 142
Period size: 42 Copynumber: 2.9 Consensus size: 42
51748434 AGTACCGTAC
* * * * *
51748444 CAATGCTATATCTCAAATATGGTCTTACATGTAATCTCGTAT
1 CAATGCAATATCCCAGATATGGTCTTACACGTAATCTCATAT
* *
51748486 CAATGACAATAGCCCAGCTATGGTCTTACACG-AAGTCTCATAT
1 CAATG-CAATATCCCAGATATGGTCTTACACGTAA-TCTCATAT
* *
51748529 CAATGCCATATCCCAGATATGGTCTTACACATAATCTCA
1 CAATGCAATATCCCAGATATGGTCTTACACGTAATCTCA
51748568 ATAACCCTAA
Statistics
Matches: 68, Mismatches: 11, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
42 34 0.50
43 34 0.50
ACGTcount: A:0.32, C:0.24, G:0.13, T:0.31
Consensus pattern (42 bp):
CAATGCAATATCCCAGATATGGTCTTACACGTAATCTCATAT
Found at i:51753063 original size:42 final size:42
Alignment explanation
Indices: 51752957--51753079 Score: 133
Period size: 43 Copynumber: 2.9 Consensus size: 42
51752947 GTCTGAGACA
* * *
51752957 TCGTGTAAGACCGTGTCTGGGACACAGGCCTCGAT-TGAGATT
1 TCGTGTAAGACCATGTCTGGGACAC-GGCATCGATATTAGATT
* *
51752999 TACGTATAAGACCATGTCTGGGACATCGGCATC-ATATTTGATT
1 T-CGTGTAAGACCATGTCTGGGACA-CGGCATCGATATTAGATT
* *
51753042 TCGTGTAAGACCCTGTCTGGGACAGAGGCATCGATATT
1 TCGTGTAAGACCATGTCTGGGACA-CGGCATCGATATT
51753080 GAGTTATATG
Statistics
Matches: 68, Mismatches: 9, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
42 30 0.44
43 37 0.54
44 1 0.01
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.28
Consensus pattern (42 bp):
TCGTGTAAGACCATGTCTGGGACACGGCATCGATATTAGATT
Found at i:51753093 original size:43 final size:42
Alignment explanation
Indices: 51752960--51753094 Score: 118
Period size: 43 Copynumber: 3.2 Consensus size: 42
51752950 TGAGACATCG
* *
51752960 TGTAAGACCGTGTCTGGGACACAGGCCTCG--ATTGAGATTTA
1 TGTAAGACCATGTCTGGGACACAGGCATCGATATTGAG-TTTA
* *
51753001 CGTATAAGACCATGTCTGGGACATC-GGCATC-ATATTTGA-TTTCG
1 --TGTAAGACCATGTCTGGGACA-CAGGCATCGATA-TTGAGTTT-A
* *
51753045 TGTAAGACCCTGTCTGGGACAGAGGCATCGATATTGAGTTATA
1 TGTAAGACCATGTCTGGGACACAGGCATCGATATTGAGTT-TA
51753088 TGTAAGA
1 TGTAAGA
51753095 TCACGTCCAA
Statistics
Matches: 75, Mismatches: 8, Indels: 18
0.74 0.08 0.18
Matches are distributed among these distances:
42 29 0.39
43 39 0.52
44 3 0.04
45 4 0.05
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.29
Consensus pattern (42 bp):
TGTAAGACCATGTCTGGGACACAGGCATCGATATTGAGTTTA
Found at i:51756011 original size:28 final size:28
Alignment explanation
Indices: 51755971--51756025 Score: 92
Period size: 28 Copynumber: 2.0 Consensus size: 28
51755961 GAGCATAACT
*
51755971 ATAAATATGATTGGGCCTAATGGGCCAC
1 ATAAATATGATTGGGCCGAATGGGCCAC
*
51755999 ATAAATGTGATTGGGCCGAATGGGCCA
1 ATAAATATGATTGGGCCGAATGGGCCA
51756026 GATTGGGCCT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.31, C:0.16, G:0.29, T:0.24
Consensus pattern (28 bp):
ATAAATATGATTGGGCCGAATGGGCCAC
Found at i:51762254 original size:16 final size:16
Alignment explanation
Indices: 51762233--51762264 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
51762223 GTTGTAACAC
51762233 CCCAAAAATCCCGAAA
1 CCCAAAAATCCCGAAA
*
51762249 CCCAAAAATCCTGAAA
1 CCCAAAAATCCCGAAA
51762265 TCTCAAATTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.50, C:0.34, G:0.06, T:0.09
Consensus pattern (16 bp):
CCCAAAAATCCCGAAA
Found at i:51763752 original size:28 final size:29
Alignment explanation
Indices: 51763716--51763847 Score: 155
Period size: 28 Copynumber: 4.7 Consensus size: 29
51763706 GTAAATATGA
* *
51763716 TTGGGCCTAAT-GGCCGTATGAATTTGAT
1 TTGGGCCTAATGGGCCATATGAATGTGAT
* * *
51763744 TTAGGCCTAATGGGCCACATAAATGTGA-
1 TTGGGCCTAATGGGCCATATGAATGTGAT
*
51763772 TTGGGCCTAAT-GGCCGTATGAATGTGAT
1 TTGGGCCTAATGGGCCATATGAATGTGAT
* *
51763800 TTGGGCCTAATGGGCCATATGAAAGAGA-
1 TTGGGCCTAATGGGCCATATGAATGTGAT
*
51763828 TTGGGCCTAATGGGCTATAT
1 TTGGGCCTAATGGGCCATAT
51763848 ACAGGTATGT
Statistics
Matches: 88, Mismatches: 13, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
27 13 0.15
28 50 0.57
29 25 0.28
ACGTcount: A:0.26, C:0.15, G:0.30, T:0.30
Consensus pattern (29 bp):
TTGGGCCTAATGGGCCATATGAATGTGAT
Found at i:51763793 original size:56 final size:56
Alignment explanation
Indices: 51763707--51763840 Score: 207
Period size: 56 Copynumber: 2.4 Consensus size: 56
51763697 AGCATAACTG
* *
51763707 TAAATATGATTGGGCCTAATGGCCGTATGAATTTGATTTAGGCCTAATGGGCCACA
1 TAAATGTGATTGGGCCTAATGGCCGTATGAATGTGATTTAGGCCTAATGGGCCACA
* *
51763763 TAAATGTGATTGGGCCTAATGGCCGTATGAATGTGATTTGGGCCTAATGGGCCATA
1 TAAATGTGATTGGGCCTAATGGCCGTATGAATGTGATTTAGGCCTAATGGGCCACA
*
51763819 TGAAA-GAGATTGGGCCTAATGG
1 T-AAATGTGATTGGGCCTAATGG
51763841 GCTATATACA
Statistics
Matches: 72, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
56 69 0.96
57 3 0.04
ACGTcount: A:0.28, C:0.14, G:0.29, T:0.29
Consensus pattern (56 bp):
TAAATGTGATTGGGCCTAATGGCCGTATGAATGTGATTTAGGCCTAATGGGCCACA
Found at i:51767215 original size:37 final size:37
Alignment explanation
Indices: 51767157--51767301 Score: 236
Period size: 37 Copynumber: 3.9 Consensus size: 37
51767147 GCTCAGACGA
* *
51767157 AATCTCCACACGAAGTTATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
*
51767194 ACTCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
* *
51767231 AATCTCCATACGTAGTCATCAGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
*
51767268 AATCTCCACACGTAGTCATCGGGTCTCACCCGGA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGA
51767302 ATATATTTCC
Statistics
Matches: 99, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 99 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
Found at i:51767417 original size:48 final size:48
Alignment explanation
Indices: 51767346--51767814 Score: 830
Period size: 48 Copynumber: 9.8 Consensus size: 48
51767336 TGTTACAACA
* * *
51767346 TTCACATTAGCCATTCGGTTTTACCACATATGCATATCACATATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
*
51767394 TTCACATTAGCCATTCGGCTTTACCACATATACCTATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
51767442 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
*
51767490 TTCACATTAGCTATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
51767538 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
51767586 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
*
51767634 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACATATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
* *
51767682 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
*
51767730 TTCACCTTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
* * *
51767778 TTTACATTAGTCATTCGGCTTTACCACATATATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATAT
51767815 TTATCTTGTA
Statistics
Matches: 405, Mismatches: 16, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 405 1.00
ACGTcount: A:0.32, C:0.26, G:0.07, T:0.35
Consensus pattern (48 bp):
TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
Found at i:51774768 original size:108 final size:110
Alignment explanation
Indices: 51774583--51774824 Score: 257
Period size: 108 Copynumber: 2.3 Consensus size: 110
51774573 GTACTTTACC
* * * * *
51774583 ATTGCCATGACTTGTCATGGTCTTACAT--GA--TAT-CCTT-TTGAAACTTACCATTGCCATGT
1 ATTGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGAAACTTACCAATGCCATGT
* * * **
51774642 CTCAACATGGTCTTACATGGTATCATTGTCTTATCAA-CTCACCA
66 CTCAACATGATCTTACATGATATCATTGCCTTAGAAACCTCACCA
*
51774686 A-TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGAAACTTATCAATGCCATGT
1 ATTGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGAAACTTACCAATGCCATGT
*** * *
51774750 CTTGGCATGATCTTACATGATATCCTTGCCTTAGAAACCTTACCA
66 CTCAACATGATCTTACATGATATCATTGCCTTAGAAACCTCACCA
* * *
51774795 ATTGTCATGCCTTGGTATGGTCTTATATGG
1 ATTGCCATGCCTTGGCATGGTCTTACATGG
51774825 TATCCTTAAA
Statistics
Matches: 112, Mismatches: 19, Indels: 9
0.80 0.14 0.06
Matches are distributed among these distances:
102 24 0.21
103 1 0.01
104 2 0.02
106 2 0.02
107 4 0.04
108 47 0.42
109 7 0.06
110 25 0.22
ACGTcount: A:0.24, C:0.23, G:0.17, T:0.36
Consensus pattern (110 bp):
ATTGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGAAACTTACCAATGCCATGT
CTCAACATGATCTTACATGATATCATTGCCTTAGAAACCTCACCA
Found at i:51774779 original size:55 final size:53
Alignment explanation
Indices: 51774578--51774831 Score: 214
Period size: 55 Copynumber: 4.8 Consensus size: 53
51774568 CACGGGTACT
* * * *
51774578 TTACCATTGCCATGACTTGTCATGGTCTTACATGATATCC-T---TTTGAAAC
1 TTACCAATGCCATGCCTTGGCATGGTCTTACATGGTATCCTTGCCTTTGAAAC
* * *** * * *
51774627 TTACCATTGCCATGTCTCAACATGGTCTTACATGGTATCATTGTCTTAT-CAAC
1 TTACCAATGCCATGCCTTGGCATGGTCTTACATGGTATCCTTGCCTT-TGAAAC
* *
51774680 TCACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATAGAAAC
1 TTACCAATGCCATGCCTTGGCATGGTCTTACATGGTATCC-TTGCCTT-T-GAAAC
* * * * *
51774735 TTATCAATGCCATGTCTTGGCATGATCTTACATGATATCCTTGCCTTAGAAACC
1 TTACCAATGCCATGCCTTGGCATGGTCTTACATGGTATCCTTGCCTTTGAAA-C
* * *
51774789 TTACCAATTGTCATGCCTTGGTATGGTCTTATATGGTATCCTT
1 TTACCAA-TGCCATGCCTTGGCATGGTCTTACATGGTATCCTT
51774832 AAACCCTAAT
Statistics
Matches: 163, Mismatches: 31, Indels: 16
0.78 0.15 0.08
Matches are distributed among these distances:
49 34 0.21
50 1 0.01
52 1 0.01
53 47 0.29
54 8 0.05
55 70 0.43
56 2 0.01
ACGTcount: A:0.24, C:0.24, G:0.16, T:0.37
Consensus pattern (53 bp):
TTACCAATGCCATGCCTTGGCATGGTCTTACATGGTATCCTTGCCTTTGAAAC
Done.