Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr03 135709677
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 135709677
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 185 of 438
Found at i:57155435 original size:40 final size:40
Alignment explanation
Indices: 57155307--57155458 Score: 141
Period size: 40 Copynumber: 3.8 Consensus size: 40
57155297 ATAATCACGT
* * *
57155307 GCACAAATGCCTTTGGGTCTTAGCCCGGATAGAATATCTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATATC-CA
* ** *
57155347 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATGTAGCCA-CTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATA-ATATCCA
* *
57155387 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATATCCA
* *
57155427 GCATAATTGTCTTCGGGAT-TTAGCCCGGATAT
1 GCACAATTGCCTTCGGG-TCTTAGCCCGGATAT
57155459 CATTCAATTT
Statistics
Matches: 91, Mismatches: 15, Indels: 12
0.77 0.13 0.10
Matches are distributed among these distances:
39 2 0.02
40 85 0.93
41 4 0.04
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.28
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATATCCA
Found at i:57155441 original size:80 final size:80
Alignment explanation
Indices: 57155307--57155456 Score: 189
Period size: 80 Copynumber: 1.9 Consensus size: 80
57155297 ATAATCACGT
* *
57155307 GCACAAATGCCTTTGGGTCTTAGCCCGGATAGAATATCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATATCTCGCACGAATGCCTTCGGGAT-TTAGC
57155371 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * * *
57155387 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATATCTC-GCACGAA-TGCCTTCGGGATTTAG
57155450 CCCGGAT
64 CCCGGAT
57155457 ATCATTCAAT
Statistics
Matches: 60, Mismatches: 7, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
79 3 0.05
80 56 0.93
81 1 0.02
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.28
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATATCTCGCACGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Found at i:57163155 original size:40 final size:40
Alignment explanation
Indices: 57163089--57163255 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
57163079 AAATTGAATG
* * *
57163089 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
57163128 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
57163168 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
57163208 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
57163248 ATATCCGG
1 ATATCCGG
57163256 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:57165334 original size:40 final size:40
Alignment explanation
Indices: 57165275--57165416 Score: 124
Period size: 40 Copynumber: 3.5 Consensus size: 40
57165265 AAATTGAATA
* * *
57165275 ATATCCGGGCTAAGTCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ***
57165315 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ** *
57165355 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTAGAAACT
*
57165395 CTATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
57165417 GCATTTGTGC
Statistics
Matches: 86, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
39 3 0.03
40 83 0.97
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:57165417 original size:40 final size:39
Alignment explanation
Indices: 57165314--57165442 Score: 152
Period size: 40 Copynumber: 3.2 Consensus size: 39
57165304 TGCTGGAAAT
* * *
57165314 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTGAC
* *
57165354 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTAT
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTGAC
* *
57165394 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGCGA-GTGAC
57165434 TATATCCGG
1 TATATCCGG
57165443 TTATATTCCG
Statistics
Matches: 78, Mismatches: 8, Indels: 6
0.85 0.09 0.07
Matches are distributed among these distances:
39 4 0.05
40 72 0.92
41 2 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGAC
Found at i:57169704 original size:25 final size:26
Alignment explanation
Indices: 57169676--57169732 Score: 62
Period size: 27 Copynumber: 2.2 Consensus size: 26
57169666 AACATGTCAT
*
57169676 GTCATAATA-TCATAGGGGTATATCA
1 GTCATAATACTCATAGGGGTATAACA
** *
57169701 GTCATTTTACCTCGTAGGGGTATAACA
1 GTCATAATA-CTCATAGGGGTATAACA
57169728 GTCAT
1 GTCAT
57169733 TTCATCAGTA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
25 7 0.27
27 19 0.73
ACGTcount: A:0.30, C:0.16, G:0.21, T:0.33
Consensus pattern (26 bp):
GTCATAATACTCATAGGGGTATAACA
Found at i:57173841 original size:20 final size:20
Alignment explanation
Indices: 57173816--57173892 Score: 145
Period size: 20 Copynumber: 3.9 Consensus size: 20
57173806 GCTCCCCGAA
57173816 TCGAGGCCATCAATGCACTG
1 TCGAGGCCATCAATGCACTG
57173836 TCGAGGCCATCAATGCACTG
1 TCGAGGCCATCAATGCACTG
57173856 TCGAGGCCATCAATGCACTG
1 TCGAGGCCATCAATGCACTG
*
57173876 TCGAGGCTATCAATGCA
1 TCGAGGCCATCAATGCA
57173893 TTTTCTCAGC
Statistics
Matches: 56, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
20 56 1.00
ACGTcount: A:0.26, C:0.29, G:0.25, T:0.21
Consensus pattern (20 bp):
TCGAGGCCATCAATGCACTG
Found at i:57175154 original size:5 final size:5
Alignment explanation
Indices: 57175138--57175255 Score: 57
Period size: 5 Copynumber: 23.6 Consensus size: 5
57175128 ATTATTTACC
* * * * *
57175138 TATAT CTATAT TATAT TTTAT TACAT AATAT T-TAT TATAC TATTT TATAT
1 TATAT -TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT
* * * * *
57175188 TTTA- T-TAT TATAT TATTT TACACT T-TAAT ATATGT TATTT TATAT
1 TATAT TATAT TATAT TATAT TATA-T TAT-AT -TATAT TATAT TATAT
*
57175233 TATTAT TACAT TATAT T-TAT TAT
1 TA-TAT TATAT TATAT TATAT TAT
57175256 GTATTTTCGT
Statistics
Matches: 83, Mismatches: 20, Indels: 19
0.68 0.16 0.16
Matches are distributed among these distances:
3 2 0.02
4 10 0.12
5 55 0.66
6 15 0.18
7 1 0.01
ACGTcount: A:0.34, C:0.05, G:0.01, T:0.60
Consensus pattern (5 bp):
TATAT
Found at i:57175173 original size:24 final size:25
Alignment explanation
Indices: 57175116--57175255 Score: 71
Period size: 24 Copynumber: 5.4 Consensus size: 25
57175106 AAAAAAACTT
*
57175116 TATTTA-TATATTATTATTTACCTA
1 TATTTATTATATTATTATTTACATA
57175140 TATCTATATTATATT-TTA-TTACATAA
1 TAT-T-TATTATATTATTATTTACAT-A
* *
57175166 TATTTATTATACTA-T-TTTATAT-
1 TATTTATTATATTATTATTTACATA
*
57175188 TTTATTATTATATTATTTTACACTTTA-ATA
1 TAT-TTATTATATTA--TT--A-TTTACATA
57175218 TATGTTATTTTATATTATTA-TTACATTA
1 TAT-TTA--TTATATTATTATTTACA-TA
57175246 TATTTATTAT
1 TATTTATTAT
57175256 GTATTTTCGT
Statistics
Matches: 90, Mismatches: 7, Indels: 37
0.67 0.05 0.28
Matches are distributed among these distances:
22 2 0.02
23 10 0.11
24 17 0.19
25 11 0.12
26 13 0.14
27 10 0.11
28 6 0.07
29 2 0.02
30 11 0.12
32 8 0.09
ACGTcount: A:0.34, C:0.06, G:0.01, T:0.60
Consensus pattern (25 bp):
TATTTATTATATTATTATTTACATA
Found at i:57175199 original size:23 final size:23
Alignment explanation
Indices: 57175169--57175252 Score: 84
Period size: 23 Copynumber: 3.7 Consensus size: 23
57175159 TACATAATAT
*
57175169 TTATTATACTATTTTATATTTTA
1 TTATTATATTATTTTATATTTTA
* *
57175192 TTATTATATTATTTTACACTTTA
1 TTATTATATTATTTTATATTTTA
* *
57175215 ATA-TATGTTATTTTATA--TTA
1 TTATTATATTATTTTATATTTTA
*
57175235 TTATTACATTATATTTAT
1 TTATTATATTAT-TTTAT
57175253 TATGTATTTT
Statistics
Matches: 50, Mismatches: 9, Indels: 5
0.78 0.14 0.08
Matches are distributed among these distances:
20 5 0.10
21 6 0.12
22 17 0.34
23 22 0.44
ACGTcount: A:0.32, C:0.05, G:0.01, T:0.62
Consensus pattern (23 bp):
TTATTATATTATTTTATATTTTA
Found at i:57181851 original size:49 final size:49
Alignment explanation
Indices: 57181718--57181960 Score: 283
Period size: 49 Copynumber: 4.9 Consensus size: 49
57181708 TAGTCAAAGC
** * *
57181718 TATCTGGTATGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
* *
57181767 TATC-GGTACACGTAGTAGCCTGCACTTAGTACTACACACGTG-CCTAAC
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACC-AAT
* * * *
57181815 CATCTGATACTCATAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-T
* * * * * *
57181866 TATCAGGTACGCATAGCAGCCTGCACTTAGTACTACACATGCGACCGAT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
* *
57181915 TATCTGGTACACGTAGTAGCCTACACTTAGTACTACACACGTGACC
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACC
57181961 TCACAATAGC
Statistics
Matches: 161, Mismatches: 28, Indels: 10
0.81 0.14 0.05
Matches are distributed among these distances:
47 2 0.01
48 38 0.24
49 79 0.49
50 4 0.02
51 38 0.24
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.26
Consensus pattern (49 bp):
TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
Found at i:57181920 original size:100 final size:97
Alignment explanation
Indices: 57181729--57181960 Score: 286
Period size: 100 Copynumber: 2.4 Consensus size: 97
57181719 ATCTGGTATG
* * * *
57181729 CATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCGGTACACGTAGTAGCCTGCACTT
1 CATAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCGGTACACATAGCAGCCTGCACTT
* *
57181794 AGTACTACACACGTGCCTAACCATCTGATACT
66 AGTACTACACACGCGCCTAACCATCTGATACA
* *
57181826 CATAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCAGGTACGCATAGCAGCCTGCA
1 CATAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-TTATC-GGTACACATAGCAGCCTGCA
* * ** *
57181891 CTTAGTACTACACATGCGACC-GATTATCTGGTACA
63 CTTAGTACTACACACGCG-CCTAACCATCTGATACA
* *
57181926 CGTAGTAGCCTACACTTAGTACTACACACGTGACC
1 CATAGTAGCCTGCACTTAGTACTACACACGTGACC
57181961 TCACAATAGC
Statistics
Matches: 115, Mismatches: 16, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
97 31 0.27
98 3 0.03
99 6 0.05
100 73 0.63
101 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.25
Consensus pattern (97 bp):
CATAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCGGTACACATAGCAGCCTGCACTT
AGTACTACACACGCGCCTAACCATCTGATACA
Found at i:57182636 original size:30 final size:30
Alignment explanation
Indices: 57182601--57182660 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
57182591 CTTTAATACG
*
57182601 AACTTTGGCAAAATTAC-CATTTTGTCCCTA
1 AACTTTGGCAAAATTACAC-TTTTGCCCCTA
* *
57182631 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
57182661 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
30 25 0.96
31 1 0.04
ACGTcount: A:0.28, C:0.25, G:0.08, T:0.38
Consensus pattern (30 bp):
AACTTTGGCAAAATTACACTTTTGCCCCTA
Found at i:57185075 original size:2 final size:2
Alignment explanation
Indices: 57185068--57185094 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
57185058 TCATGACATG
57185068 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
57185095 GACTAGTCTC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:57187816 original size:49 final size:49
Alignment explanation
Indices: 57187739--57187983 Score: 274
Period size: 49 Copynumber: 4.9 Consensus size: 49
57187729 TAGCCGAAGC
* * *
57187739 TATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAAT
* * * * *
57187788 TATCCGGTACACGTAGTAGCCTGTACTTAGTACTACACACGTGGCCTAAC
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACC-AAT
* * ** *
57187838 CATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACATGATCGAAGT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA-T
* * * * *
57187889 TATCAGGTGCGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAAT
* * *
57187938 TATCTGGTACACGTAGTAGCCTACACTTAGTACTATACACGTGACC
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACC
57187984 TCACAATAGT
Statistics
Matches: 159, Mismatches: 34, Indels: 6
0.80 0.17 0.03
Matches are distributed among these distances:
49 78 0.49
50 45 0.28
51 36 0.23
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.26
Consensus pattern (49 bp):
TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAAT
Found at i:57187921 original size:101 final size:98
Alignment explanation
Indices: 57187752--57187977 Score: 272
Period size: 100 Copynumber: 2.3 Consensus size: 98
57187742 CTGGTACGCA
** * * *
57187752 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACGTAGTAGCCTGTACTTA
1 TAGTAGCCTGCACTTAGTACTACACACACGACCAATTATCAGGTACACATAGTAGCCTGCACTTA
* *
57187817 GTACTACACACGTGGCCTAACCATCTGATACACG
66 GTACTACACACGCGACC-AACCATCTGATACACG
* * * *
57187851 TAGTAGCCTGCACTTAGTACTACACACATGATCGAAGTTATCAGGTGCGCATAGTAGCCTGCACT
1 TAGTAGCCTGCACTTAGTACTACACACACGA-CCAA-TTATCAGGTACACATAGTAGCCTGCACT
* ** *
57187916 TAGTACTACACATGCGACCAATTATCTGGTACACG
64 TAGTACTACACACGCGACCAACCATCTGATACACG
* *
57187951 TAGTAGCCTACACTTAGTACTATACAC
1 TAGTAGCCTGCACTTAGTACTACACAC
57187978 GTGACCTCAC
Statistics
Matches: 108, Mismatches: 17, Indels: 3
0.84 0.13 0.02
Matches are distributed among these distances:
99 28 0.26
100 41 0.38
101 39 0.36
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.26
Consensus pattern (98 bp):
TAGTAGCCTGCACTTAGTACTACACACACGACCAATTATCAGGTACACATAGTAGCCTGCACTTA
GTACTACACACGCGACCAACCATCTGATACACG
Found at i:57188664 original size:30 final size:30
Alignment explanation
Indices: 57188630--57188689 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
57188620 CTTTAATACG
*
57188630 AACTTTGGCAAAATTAC-CATTTTGCCCCTA
1 AACTTTGACAAAATTACAC-TTTTGCCCCTA
* *
57188660 AACTTTTACATAATTACACTTTTGCCCCTA
1 AACTTTGACAAAATTACACTTTTGCCCCTA
57188690 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
30 25 0.96
31 1 0.04
ACGTcount: A:0.30, C:0.27, G:0.07, T:0.37
Consensus pattern (30 bp):
AACTTTGACAAAATTACACTTTTGCCCCTA
Found at i:57196783 original size:206 final size:205
Alignment explanation
Indices: 57196321--57196867 Score: 864
Period size: 206 Copynumber: 2.7 Consensus size: 205
57196311 GGCTGAGGCA
*
57196321 AGATCCAAGATGGTTTGGCGTCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGC
1 AGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGC
*
57196386 TTTCACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCAT-TGTATTGTCAGATAACAA
66 TTTCACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATC-TCTGTATTGTCAGAGAACAA
* * * * * ** *
57196450 AACAAAGTTTGGTGTCTCATATTCGACGGAGAGCAGACACATAGCAAATCTGGCCTTCAGATGTT
130 ATCGAAGTTTGGCGTCTCATATTCGACAGAGAGCAAACACATAGCAAATCTAACCTTCAGATGCT
*
57196515 TATACTGAAGC
195 TAGACTGAAGC
* *
57196526 AGGTCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAAAAAATCGAAGACATAGCTGATTTGGC
1 AGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGC
* *
57196591 TTTCACGTGCTTACGATGAAGCAAATTTAAGATGATTTGGCATCTCTGTATTGTCAAAGAACAAA
66 TTTCACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAA
* *
57196656 TCGAAGTTTGGCGTCTCCATATTCGACAGAGGGCAAACACATAGCAGATCTAACCTTCAGATGCT
131 TCGAAGTTTGGCGTCT-CATATTCGACAGAGAGCAAACACATAGCAAATCTAACCTTCAGATGCT
57196721 TAGACTGAAGC
195 TAGACTGAAGC
* * *
57196732 AGATCCAAGATGGTTTGGTATCCTTGTGCTTACAAGGAGCAAATCGAAGACATAGCTGATTTGGT
1 AGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGC
*
57196797 TTTCGCGTGCTTAC-ACTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAA
66 TTTCACGTGCTTACGA-TGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAA
57196861 ATCGAAG
130 ATCGAAG
57196868 AAGAAGATGT
Statistics
Matches: 314, Mismatches: 25, Indels: 5
0.91 0.07 0.01
Matches are distributed among these distances:
204 1 0.00
205 136 0.43
206 177 0.56
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.28
Consensus pattern (205 bp):
AGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGC
TTTCACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAA
TCGAAGTTTGGCGTCTCATATTCGACAGAGAGCAAACACATAGCAAATCTAACCTTCAGATGCTT
AGACTGAAGC
Found at i:57197429 original size:20 final size:20
Alignment explanation
Indices: 57197404--57197457 Score: 99
Period size: 20 Copynumber: 2.7 Consensus size: 20
57197394 CCCCGAATCG
*
57197404 AGGCCATCAATGCACTGTCA
1 AGGCCATCAATGCACTATCA
57197424 AGGCCATCAATGCACTATCA
1 AGGCCATCAATGCACTATCA
57197444 AGGCCATCAATGCA
1 AGGCCATCAATGCA
57197458 TTTTCTCAGC
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.33, C:0.30, G:0.19, T:0.19
Consensus pattern (20 bp):
AGGCCATCAATGCACTATCA
Found at i:57198718 original size:5 final size:5
Alignment explanation
Indices: 57198703--57198818 Score: 53
Period size: 5 Copynumber: 23.4 Consensus size: 5
57198693 TTATTTACCC
* * * * *
57198703 ATATCT ATATT ATATT TTATT ACATG ATATT -TATT ATACT ATTTT ATATT
1 ATAT-T ATATT ATATT ATATT ATATT ATATT ATATT ATATT ATATT ATATT
* * * * *
57198753 TTA-T -TATT ATATT ATTTT ACACTT AAATAT ATGTT AT-TT ATATT ATTATT
1 ATATT ATATT ATATT ATATT ATA-TT ATAT-T ATATT ATATT ATATT A-TATT
* *
57198803 ACATC ATATT -TATT AT
1 ATATT ATATT ATATT AT
57198819 GTATTTTCGT
Statistics
Matches: 81, Mismatches: 21, Indels: 17
0.68 0.18 0.14
Matches are distributed among these distances:
3 2 0.02
4 14 0.17
5 49 0.60
6 16 0.20
ACGTcount: A:0.34, C:0.06, G:0.02, T:0.58
Consensus pattern (5 bp):
ATATT
Found at i:57200732 original size:15 final size:16
Alignment explanation
Indices: 57200712--57200744 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
57200702 ATGGACTTCT
57200712 TTATTA-AATTTTAAA
1 TTATTAGAATTTTAAA
*
57200727 TTATTAGTATTTTAAA
1 TTATTAGAATTTTAAA
57200743 TT
1 TT
57200745 GGGTATGTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 6 0.38
16 10 0.62
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (16 bp):
TTATTAGAATTTTAAA
Found at i:57203433 original size:31 final size:31
Alignment explanation
Indices: 57203390--57203453 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
57203380 CCTTTTCATA
57203390 TTTCATAATTCATAACACTGGGCCGAAGCCT
1 TTTCATAATTCATAACACTGGGCCGAAGCCT
* **
57203421 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATAATTCATAACACTGGGCCGAAGCCT
57203452 TT
1 TT
57203454 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.36
Consensus pattern (31 bp):
TTTCATAATTCATAACACTGGGCCGAAGCCT
Found at i:57203722 original size:23 final size:24
Alignment explanation
Indices: 57203646--57203789 Score: 195
Period size: 24 Copynumber: 6.0 Consensus size: 24
57203636 GTTTTATCAT
*
57203646 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
57203671 ATAACTGGGGCA-AAGCCCTTTTTTA
1 ATAACTGGGGCATAAGCCC--TTTTA
57203696 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
57203719 ATAACTAGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
57203743 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
* *
57203767 AAAACTGGGGCATAAGCCGTTTT
1 ATAACTGGGGCATAAGCCCTTTT
57203790 GCATTTCCTC
Statistics
Matches: 109, Mismatches: 5, Indels: 11
0.87 0.04 0.09
Matches are distributed among these distances:
23 23 0.21
24 55 0.50
25 25 0.23
26 6 0.06
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:57203866 original size:20 final size:20
Alignment explanation
Indices: 57203843--57203885 Score: 86
Period size: 20 Copynumber: 2.1 Consensus size: 20
57203833 GAACATCTCG
57203843 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
57203863 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
57203883 TGT
1 TGT
57203886 TTATCAAAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.33, C:0.19, G:0.12, T:0.37
Consensus pattern (20 bp):
TGTGCATATCATACATATCA
Found at i:57205365 original size:40 final size:40
Alignment explanation
Indices: 57205320--57205487 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
57205310 CGGAATATAA
57205320 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
57205360 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
57205400 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * * * *
57205440 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTGAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
57205480 CCGGATAT
1 CCGGATAT
57205488 CATTCAATTT
Statistics
Matches: 106, Mismatches: 21, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 105 0.99
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:57212520 original size:40 final size:40
Alignment explanation
Indices: 57212475--57212641 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
57212465 CGGAATATAA
57212475 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
57212515 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
57212555 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
57212595 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
57212634 CCGGATAT
1 CCGGATAT
57212642 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:57213966 original size:8 final size:8
Alignment explanation
Indices: 57213953--57213988 Score: 63
Period size: 8 Copynumber: 4.5 Consensus size: 8
57213943 AAATGCCAGA
57213953 ATTTCGGC
1 ATTTCGGC
57213961 ATTTCGGC
1 ATTTCGGC
*
57213969 TTTTCGGC
1 ATTTCGGC
57213977 ATTTCGGC
1 ATTTCGGC
57213985 ATTT
1 ATTT
57213989 ATCGCTTTAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
8 26 1.00
ACGTcount: A:0.11, C:0.22, G:0.22, T:0.44
Consensus pattern (8 bp):
ATTTCGGC
Found at i:57222148 original size:40 final size:40
Alignment explanation
Indices: 57222082--57222248 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
57222072 AAATTGAATG
* * *
57222082 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
57222121 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
57222161 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
57222201 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
57222241 ATATCCGG
1 ATATCCGG
57222249 TTATATTCCG
Statistics
Matches: 103, Mismatches: 20, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
39 16 0.16
40 85 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:57229811 original size:80 final size:80
Alignment explanation
Indices: 57229727--57229875 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
57229717 TATGGTAACC
* * * *
57229727 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
57229791 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
57229807 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
57229872 CCGG
66 CCGG
57229876 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:57229817 original size:40 final size:38
Alignment explanation
Indices: 57229768--57229875 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
57229758 ATCACGATTT
*
57229768 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
57229808 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
57229848 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
57229876 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:57231709 original size:53 final size:53
Alignment explanation
Indices: 57231592--57231720 Score: 143
Period size: 53 Copynumber: 2.4 Consensus size: 53
57231582 GGCTGTCACA
57231592 AACTGAGGGTATTTCGATAATTTTACAAATCGAGGGTATTTCAATAATTTTAC
1 AACTGAGGGTATTTCGATAATTTTACAAATCGAGGGTATTTCAATAATTTTAC
** * * * * * **
57231645 AACCAATGGTATTTTGGTAATTTTATAAATCGGGGGTACTTT-GGTAATTTTAC
1 AACTGAGGGTATTTCGATAATTTTACAAATCGAGGGTA-TTTCAATAATTTTAC
* *
57231698 AACTGGGGGTATTTCAATAATTT
1 AACTGAGGGTATTTCGATAATTT
57231721 GGTAAACTAA
Statistics
Matches: 59, Mismatches: 16, Indels: 2
0.77 0.21 0.03
Matches are distributed among these distances:
53 56 0.95
54 3 0.05
ACGTcount: A:0.31, C:0.10, G:0.19, T:0.40
Consensus pattern (53 bp):
AACTGAGGGTATTTCGATAATTTTACAAATCGAGGGTATTTCAATAATTTTAC
Found at i:57231718 original size:26 final size:26
Alignment explanation
Indices: 57231592--57231720 Score: 107
Period size: 27 Copynumber: 4.9 Consensus size: 26
57231582 GGCTGTCACA
57231592 AACTGAGGGTATTTCGATAATTTTAC
1 AACTGAGGGTATTTCGATAATTTTAC
* *
57231618 AAATCGAGGGTATTTCAATAATTTTAC
1 AACT-GAGGGTATTTCGATAATTTTAC
** * * * *
57231645 AACCAATGGTATTTTGGTAATTTTAT
1 AACTGAGGGTATTTCGATAATTTTAC
* * *
57231671 AAATCGGGGGTACTTT-GGTAATTTTAC
1 AACT-GAGGGTA-TTTCGATAATTTTAC
* *
57231698 AACTGGGGGTATTTCAATAATTT
1 AACTGAGGGTATTTCGATAATTT
57231721 GGTAAACTAA
Statistics
Matches: 80, Mismatches: 19, Indels: 8
0.75 0.18 0.07
Matches are distributed among these distances:
25 3 0.04
26 34 0.43
27 40 0.50
28 3 0.04
ACGTcount: A:0.31, C:0.10, G:0.19, T:0.40
Consensus pattern (26 bp):
AACTGAGGGTATTTCGATAATTTTAC
Found at i:57233305 original size:47 final size:47
Alignment explanation
Indices: 57233251--57233582 Score: 488
Period size: 47 Copynumber: 7.1 Consensus size: 47
57233241 TTAGGATTTT
** * *
57233251 ATGTGATGAATGTGAATGTGCATATATGAGATAAGGCCGAATGACCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
57233298 ATGTGATGAATGTGAACATGCATATAAGAGATAAGGCCGAATGACCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
57233345 ATGTGATGAATGTGAACATGCCAT-TATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATG-CATATATGTGATAAGGCCGAATGGCCA
57233392 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
57233439 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
**
57233486 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCAAAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * * *
57233533 ATGTGATGAACGTGGAA-GTGTATATATGTGGTAAAGCCGAATGGCTA
1 ATGTGATGAATGT-GAACATGCATATATGTGATAAGGCCGAATGGCCA
57233580 ATG
1 ATG
57233583 CGAAATGTGT
Statistics
Matches: 264, Mismatches: 18, Indels: 6
0.92 0.06 0.02
Matches are distributed among these distances:
46 3 0.01
47 255 0.97
48 6 0.02
ACGTcount: A:0.35, C:0.12, G:0.28, T:0.25
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:57233398 original size:22 final size:22
Alignment explanation
Indices: 57233327--57233492 Score: 67
Period size: 22 Copynumber: 7.1 Consensus size: 22
57233317 GCATATAAGA
*
57233327 GATAAGGCCGAATGACCAATGT
1 GATAAGGCCGAATGGCCAATGT
* *
57233349 GATGAATG-TGAACAT-GCCATTATGT
1 GAT-AAGGCCG-A-ATGGCCA--ATGT
57233374 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
* * *
57233396 GATGAATG-TGAACAT-GCATATATGT
1 GAT-AAGGCCG-A-ATGGC-CA-ATGT
57233421 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
* *
57233443 GATGAATG-TGAACAT-G-CATATGTGT
1 GAT-AAGGCCG-A-ATGGCCA-A--TGT
57233468 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
57233490 GAT
1 GAT
57233493 GAATGTGAAC
Statistics
Matches: 106, Mismatches: 15, Indels: 46
0.63 0.09 0.28
Matches are distributed among these distances:
22 28 0.26
23 26 0.25
24 27 0.25
25 25 0.24
ACGTcount: A:0.33, C:0.14, G:0.28, T:0.25
Consensus pattern (22 bp):
GATAAGGCCGAATGGCCAATGT
Found at i:57233612 original size:46 final size:46
Alignment explanation
Indices: 57233556--57233674 Score: 202
Period size: 46 Copynumber: 2.6 Consensus size: 46
57233546 GGAAGTGTAT
*
57233556 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
* *
57233602 ATATGAGGTAAAGCTGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
*
57233648 ATATGTGGTAAAGCCAAATGGCTAATG
1 ATATGTGGTAAAGCCGAATGGCTAATG
57233675 TGAGAGATGT
Statistics
Matches: 67, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
46 67 1.00
ACGTcount: A:0.34, C:0.09, G:0.31, T:0.25
Consensus pattern (46 bp):
ATATGTGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
Found at i:57235964 original size:6 final size:6
Alignment explanation
Indices: 57235946--57236071 Score: 73
Period size: 6 Copynumber: 20.3 Consensus size: 6
57235936 AAGAAACATT
* * * *
57235946 ATCAGA A-CTAGA ATCAGA ATCAGA ATTAGA ATTAG- GTGACAGA ATTAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA
* *
57235995 ATCAGA ATCAGA ATCAGT ATCAGGTA A-CAGA ATCAAA ATCAGA ATCA-A
1 ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA ATCAGA
*
57236043 TATCAAGTA A-CAGA ATCTAAA ATCAGA AT
1 -ATC-AG-A ATCAGA ATC-AGA ATCAGA AT
57236072 GTGAATGCAA
Statistics
Matches: 94, Mismatches: 12, Indels: 28
0.70 0.09 0.21
Matches are distributed among these distances:
5 7 0.07
6 70 0.74
7 13 0.14
8 3 0.03
9 1 0.01
ACGTcount: A:0.49, C:0.13, G:0.16, T:0.21
Consensus pattern (6 bp):
ATCAGA
Found at i:57235998 original size:37 final size:37
Alignment explanation
Indices: 57235948--57236041 Score: 125
Period size: 37 Copynumber: 2.5 Consensus size: 37
57235938 GAAACATTAT
* * * *
57235948 CAGAACTAGAATCAGAATCAGAATTAGAATTAGGTGA
1 CAGAATTAGAATCAGAATCAGAATCAGAATCAGGTAA
*
57235985 CAGAATTAGAATCAGAATCAGAATCAGTATCAGGTAA
1 CAGAATTAGAATCAGAATCAGAATCAGAATCAGGTAA
* *
57236022 CAGAATCAAAATCAGAATCA
1 CAGAATTAGAATCAGAATCA
57236042 ATATCAAGTA
Statistics
Matches: 50, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 50 1.00
ACGTcount: A:0.48, C:0.14, G:0.18, T:0.20
Consensus pattern (37 bp):
CAGAATTAGAATCAGAATCAGAATCAGAATCAGGTAA
Found at i:57236027 original size:31 final size:31
Alignment explanation
Indices: 57235992--57236071 Score: 124
Period size: 31 Copynumber: 2.5 Consensus size: 31
57235982 TGACAGAATT
* * *
57235992 AGAATCAGAATCAGAATCAGTATCAGGTAAC
1 AGAATCAAAATCAGAATCAATATCAAGTAAC
57236023 AGAATCAAAATCAGAATCAATATCAAGTAAC
1 AGAATCAAAATCAGAATCAATATCAAGTAAC
57236054 AGAATCTAAAATCAGAAT
1 AGAATC-AAAATCAGAAT
57236072 GTGAATGCAA
Statistics
Matches: 45, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
31 34 0.76
32 11 0.24
ACGTcount: A:0.51, C:0.15, G:0.14, T:0.20
Consensus pattern (31 bp):
AGAATCAAAATCAGAATCAATATCAAGTAAC
Found at i:57236239 original size:27 final size:26
Alignment explanation
Indices: 57236208--57236309 Score: 114
Period size: 27 Copynumber: 3.8 Consensus size: 26
57236198 GCTCAGTTAT
* *
57236208 CAGATATTGTGACAAAGTCACCAGATA
1 CAGATATTGTGGCAAAGCCACCAGA-A
* *
57236235 TAGATATTGTGGCAGAGCCACCAGAA
1 CAGATATTGTGGCAAAGCCACCAGAA
*
57236261 CAGATATTTGTGGCATAGCCACCAGAAA
1 CAGATA-TTGTGGCAAAGCCACCAG-AA
* *
57236289 CAGATAATGTAGCAAAGCCAC
1 CAGATATTGTGGCAAAGCCAC
57236310 TTAACAAAAT
Statistics
Matches: 64, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
26 6 0.09
27 50 0.78
28 8 0.12
ACGTcount: A:0.38, C:0.21, G:0.22, T:0.20
Consensus pattern (26 bp):
CAGATATTGTGGCAAAGCCACCAGAA
Found at i:57236496 original size:22 final size:21
Alignment explanation
Indices: 57236468--57236532 Score: 60
Period size: 22 Copynumber: 3.0 Consensus size: 21
57236458 GCAAATACGT
57236468 TTGGCACACAGCCATAATCAGG
1 TTGGCACA-AGCCATAATCAGG
* *
57236490 TTGGCACAGAGCTAT-ATGTAGG
1 TTGGCACA-AGCCATAAT-CAGG
*
57236512 TTGACACGAAGCCATAATCAG
1 TTGGCAC-AAGCCATAATCAG
57236533 AAGGCTTTAA
Statistics
Matches: 34, Mismatches: 6, Indels: 6
0.74 0.13 0.13
Matches are distributed among these distances:
21 2 0.06
22 29 0.85
23 3 0.09
ACGTcount: A:0.32, C:0.22, G:0.25, T:0.22
Consensus pattern (21 bp):
TTGGCACAAGCCATAATCAGG
Found at i:57237016 original size:27 final size:27
Alignment explanation
Indices: 57236960--57237287 Score: 369
Period size: 27 Copynumber: 12.2 Consensus size: 27
57236950 GGGCAAAATG
* * * * *
57236960 GTAATTTTACCCCACA-AGGTATCTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
** *
57236986 GTAATTCCGCCCTACAGGGGTATTTTA
1 GTAATTCTACCCTACAGGGGTATTTCA
* **
57237013 GTAATTCTACCCTATAGGGGTATTTTG
1 GTAATTCTACCCTACAGGGGTATTTCA
*
57237040 GTAATTCTACCCTACAGGGGTATTGC-
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
57237066 GATACTTCTACCCTACAGGGTTATTTCA
1 G-TAATTCTACCCTACAGGGGTATTTCA
*
57237094 GTAATTCTACCCTACAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
** *
57237121 GTAATTCTACCCTACAATGGTA-TTCTG
1 GTAATTCTACCCTACAGGGGTATTTC-A
*
57237148 GTAATTCTACCCTACA-GGGTATTGC-
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
57237173 GATAATTCTACCCTACAGGGGTATTGCG
1 G-TAATTCTACCCTACAGGGGTATTTCA
57237201 GTAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
*
57237228 GTAATTCTACCCGACAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
* * *
57237255 GTATTTCTACCCTACAAGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
57237282 GTAATT
1 GTAATT
57237288 TTGTAAATCG
Statistics
Matches: 261, Mismatches: 33, Indels: 15
0.84 0.11 0.05
Matches are distributed among these distances:
25 1 0.00
26 35 0.13
27 223 0.85
28 2 0.01
ACGTcount: A:0.24, C:0.22, G:0.20, T:0.34
Consensus pattern (27 bp):
GTAATTCTACCCTACAGGGGTATTTCA
Found at i:57237200 original size:134 final size:134
Alignment explanation
Indices: 57236960--57237287 Score: 444
Period size: 134 Copynumber: 2.4 Consensus size: 134
57236950 GGGCAAAATG
* * * ** * *
57236960 GTAATTTTACCCCACA-AGGTATCTCGGTAATTCCGCCCTACAGGGGTATTTTAGTAATTCTACC
1 GTAATTCTACCCCACAGGGGTATTTCGGTAATTCTACCCTACAAGGGTA-TTTGGTAATTCTACC
* ** * * *
57237024 CTATAGGGGTATTTTGGTAATTCTACCCTACAGGGGTATTGCGATACTTCTACCCTACAGGGTTA
65 CTACAGGGGTATTGCGATAATTCTACCCTACAGGGGTATTGCGATAATTCTACCCTACAGGGGTA
57237089 TTTCA
130 TTTCA
* *
57237094 GTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAATGGTATTCTGGTAATTCTACC
1 GTAATTCTACCCCACAGGGGTATTTCGGTAATTCTACCCTACAAGGGTATT-TGGTAATTCTACC
*
57237159 CTACA-GGGTATTGCGATAATTCTACCCTACAGGGGTATTGCGGTAATTCTACCCTACAGGGGTA
65 CTACAGGGGTATTGCGATAATTCTACCCTACAGGGGTATTGCGATAATTCTACCCTACAGGGGTA
57237223 TTTCA
130 TTTCA
* * *
57237228 GTAATTCTACCCGACAGGGGTATTTCAGTATTTCTACCCTACAAGGGTATTTCGGTAATT
1 GTAATTCTACCCCACAGGGGTATTTCGGTAATTCTACCCTACAAGGGTATTT-GGTAATT
57237288 TTGTAAATCG
Statistics
Matches: 171, Mismatches: 20, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
133 1 0.01
134 128 0.75
135 42 0.25
ACGTcount: A:0.24, C:0.22, G:0.20, T:0.34
Consensus pattern (134 bp):
GTAATTCTACCCCACAGGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTGGTAATTCTACCC
TACAGGGGTATTGCGATAATTCTACCCTACAGGGGTATTGCGATAATTCTACCCTACAGGGGTAT
TTCA
Found at i:57237339 original size:27 final size:26
Alignment explanation
Indices: 57237269--57237341 Score: 65
Period size: 27 Copynumber: 2.7 Consensus size: 26
57237259 TTCTACCCTA
*
57237269 CAAGGGTATTTCGGTAATTTTGTAAAT
1 CAAGGGTATTT-GGTAATTCTGTAAAT
* ****
57237296 CGAGGGTAAAACAGTAATTCTGTAAAT
1 CAAGGGT-ATTTGGTAATTCTGTAAAT
57237323 CAAGGGTACTTTGGTAATT
1 CAAGGGTA-TTTGGTAATT
57237342 TTACAAGTCG
Statistics
Matches: 33, Mismatches: 11, Indels: 4
0.69 0.23 0.08
Matches are distributed among these distances:
26 1 0.03
27 31 0.94
28 1 0.03
ACGTcount: A:0.33, C:0.10, G:0.23, T:0.34
Consensus pattern (26 bp):
CAAGGGTATTTGGTAATTCTGTAAAT
Found at i:57237355 original size:27 final size:26
Alignment explanation
Indices: 57237323--57237666 Score: 301
Period size: 27 Copynumber: 12.8 Consensus size: 26
57237313 TTCTGTAAAT
* *
57237323 CAAGGGTACTTTGGTAATTTTACAAGT
1 CAAGGGTATTTTGGTAATTTTACAA-A
* *** **
57237350 CGAGGGTATTTCATTAATTTTACAGGT
1 CAAGGGTATTTTGGTAATTTTACA-AA
* *** *
57237377 CGAGGGTATTTCAATAATTTCACAAA
1 CAAGGGTATTTTGGTAATTTTACAAA
* *
57237403 TCAAGGATCTTTTGGTAATTTTACAAA
1 -CAAGGGTATTTTGGTAATTTTACAAA
* *
57237430 CTAGGGGTATTTTGATAATTTTACAAA
1 C-AAGGGTATTTTGGTAATTTTACAAA
*
57237457 CCAGGGGTATTTTGGTAATTTTACAAA
1 -CAAGGGTATTTTGGTAATTTTACAAA
* * *
57237484 CCAGGGGTATTTTGGTGATTTTATAAA
1 -CAAGGGTATTTTGGTAATTTTACAAA
*
57237511 CAAAGGGTATTTTAGTAATTTTACAAA
1 C-AAGGGTATTTTGGTAATTTTACAAA
* **
57237538 CCAGGGGTATTTTGGTAATTTTGTAAA
1 -CAAGGGTATTTTGGTAATTTTACAAA
57237565 CCAAGGGTATTTTGGTAATTTTACAAA
1 -CAAGGGTATTTTGGTAATTTTACAAA
* *
57237592 CCAAGGGTATTTTGGTGATTTTATAAA
1 -CAAGGGTATTTTGGTAATTTTACAAA
* *
57237619 CCAAGGGTATTCTAGTAATTTTACAAA
1 -CAAGGGTATTTTGGTAATTTTACAAA
* *
57237646 TCAGGGGTATTTTGTTAATTT
1 -CAAGGGTATTTTGGTAATTT
57237667 GGTAAACTAA
Statistics
Matches: 265, Mismatches: 46, Indels: 12
0.82 0.14 0.04
Matches are distributed among these distances:
26 2 0.01
27 261 0.98
28 2 0.01
ACGTcount: A:0.31, C:0.10, G:0.20, T:0.39
Consensus pattern (26 bp):
CAAGGGTATTTTGGTAATTTTACAAA
Found at i:57237673 original size:54 final size:54
Alignment explanation
Indices: 57237412--57237666 Score: 375
Period size: 54 Copynumber: 4.7 Consensus size: 54
57237402 ATCAAGGATC
* * * * *
57237412 TTTTGGTAATTTTACAAACTAGGGGTATTTTGATAATTTTACAAACCAGGGGTA
1 TTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACCAAGGGTA
* * *
57237466 TTTTGGTAATTTTACAAACCAGGGGTATTTTGGTGATTTTATAAACAAAGGGTA
1 TTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACCAAGGGTA
*
57237520 TTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTGTAAACCAAGGGTA
1 TTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACCAAGGGTA
* * *
57237574 TTTTGGTAATTTTACAAACCAAGGGTATTTTGGTGATTTTATAAACCAAGGGTA
1 TTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACCAAGGGTA
* * *
57237628 TTCTAGTAATTTTACAAATCAGGGGTATTTTGTTAATTT
1 TTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTT
57237667 GGTAAACTAA
Statistics
Matches: 181, Mismatches: 20, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
54 181 1.00
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.40
Consensus pattern (54 bp):
TTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACCAAGGGTA
Found at i:57239579 original size:41 final size:41
Alignment explanation
Indices: 57239522--57239604 Score: 139
Period size: 41 Copynumber: 2.0 Consensus size: 41
57239512 GAAGATCACA
* *
57239522 TTGACCATGACAATGGCGCAGTAAAGACATTTAGAAGTTTT
1 TTGACCATGACAATGGCGCAGTAAAAACATATAGAAGTTTT
*
57239563 TTGACCATGACAATGGCGCATTAAAAACATATAGAAGTTTT
1 TTGACCATGACAATGGCGCAGTAAAAACATATAGAAGTTTT
57239604 T
1 T
57239605 CTCTTTTAAA
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
41 39 1.00
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.30
Consensus pattern (41 bp):
TTGACCATGACAATGGCGCAGTAAAAACATATAGAAGTTTT
Found at i:57249784 original size:29 final size:28
Alignment explanation
Indices: 57249752--57249854 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
57249742 GTGACGAGAT
* *
57249752 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTG-AATATA
* *
57249781 TGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTT-GAATATA
* * *
57249810 TGGCACTATGTGTGCGGGCTTGAATCACA
1 TGGCACTAAGTGTGCGAGCTTGAAT-ATA
57249839 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
57249855 TGATTGAGTA
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 3 0.05
29 58 0.94
30 1 0.02
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (28 bp):
TGGCACTAAGTGTGCGAGCTTGAATATA
Found at i:57257501 original size:29 final size:28
Alignment explanation
Indices: 57257469--57257571 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
57257459 GTGACGAGAT
* *
57257469 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTG-AATATA
* *
57257498 TGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTT-GAATATA
* * *
57257527 TGGCACTATGTGTGCGGGCTTGAATCACA
1 TGGCACTAAGTGTGCGAGCTTGAAT-ATA
57257556 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
57257572 TGATTGAGTA
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 3 0.05
29 58 0.94
30 1 0.02
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (28 bp):
TGGCACTAAGTGTGCGAGCTTGAATATA
Found at i:57262907 original size:29 final size:31
Alignment explanation
Indices: 57262858--57262916 Score: 70
Period size: 29 Copynumber: 2.0 Consensus size: 31
57262848 AATGTGTATC
* *
57262858 TATTTATTTGATGGATGAAAT-T-GAGATAG
1 TATTTATTTAATAGATGAAATGTGGAGATAG
57262887 TATTTATTATAATAGAT-AAATGTGGAGATA
1 TATTTATT-TAATAGATGAAATGTGGAGATA
57262917 TTAAATTTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
29 12 0.48
30 7 0.28
31 6 0.24
ACGTcount: A:0.39, C:0.00, G:0.20, T:0.41
Consensus pattern (31 bp):
TATTTATTTAATAGATGAAATGTGGAGATAG
Found at i:57265346 original size:93 final size:93
Alignment explanation
Indices: 57265234--57265405 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
57265224 GCCCATAAGT
* *
57265234 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
57265299 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
57265327 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
57265392 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
57265406 CAAATATCCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:57265401 original size:46 final size:46
Alignment explanation
Indices: 57265226--57265401 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
57265216 TGTAACCCGC
* * *
57265226 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
57265272 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
57265322 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
57265365 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
57265402 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:57270209 original size:9 final size:9
Alignment explanation
Indices: 57270180--57270218 Score: 53
Period size: 9 Copynumber: 4.3 Consensus size: 9
57270170 TACCAATTTG
57270180 TAAAA-AAA
1 TAAAATAAA
*
57270188 TAATATAAAA
1 TAAAAT-AAA
57270198 TAAAATAAA
1 TAAAATAAA
57270207 TAAAATAAA
1 TAAAATAAA
57270216 TAA
1 TAA
57270219 CACAAATTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
8 4 0.15
9 15 0.56
10 8 0.30
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (9 bp):
TAAAATAAA
Found at i:57270209 original size:19 final size:18
Alignment explanation
Indices: 57270180--57270215 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
57270170 TACCAATTTG
*
57270180 TAAAAAAATAATATAAAA
1 TAAAAAAATAAAATAAAA
57270198 TAAAATAAATAAAATAAA
1 TAAAA-AAATAAAATAAA
57270216 TAACACAAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 5 0.31
19 11 0.69
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (18 bp):
TAAAAAAATAAAATAAAA
Found at i:57272520 original size:40 final size:40
Alignment explanation
Indices: 57272348--57272513 Score: 244
Period size: 40 Copynumber: 4.2 Consensus size: 40
57272338 AACCCAAGTA
* * *
57272348 CCTTCGGGATTTAG-CCGGATATAGCAACTTGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
57272387 CCTTCGGGACTTAGCTCGGATATAGTAACTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
57272427 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACGAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
57272467 CCTTCGGGACTTAGCCCGAATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
57272507 CCTTCGG
1 CCTTCGG
57272514 ATCTTAGTCC
Statistics
Matches: 114, Mismatches: 12, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 13 0.11
40 101 0.89
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:57277721 original size:45 final size:45
Alignment explanation
Indices: 57277658--57277835 Score: 207
Period size: 45 Copynumber: 3.9 Consensus size: 45
57277648 AAAACGTGGA
*
57277658 CTTACTCACACA-CATATATCGGAATCACATATCGATGCCATGGT
1 CTTACTCGCACATCATATATCGGAATCACATATCGATGCCATGGT
* *
57277702 CTTACTCGCATATCATATATCGTAATCACATATCGATGCCAAACATGGT
1 CTTACTCGCACATCATATATCGGAATCACATATCGATG-C---CATGGT
* * * *
57277751 CTTACTTGCACA-CATGTATAGGAATCACACATCGATGCCATGGT
1 CTTACTCGCACATCATATATCGGAATCACATATCGATGCCATGGT
* * *
57277795 CTTACTCGCACATCACATATTGGAATTCACATGTCGATGCC
1 CTTACTCGCACATCATATATCGGAA-TCACATATCGATGCC
57277836 TCATATACAT
Statistics
Matches: 112, Mismatches: 15, Indels: 12
0.81 0.11 0.09
Matches are distributed among these distances:
44 27 0.24
45 33 0.29
46 14 0.12
47 1 0.01
48 21 0.19
49 16 0.14
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.29
Consensus pattern (45 bp):
CTTACTCGCACATCATATATCGGAATCACATATCGATGCCATGGT
Found at i:57277755 original size:93 final size:94
Alignment explanation
Indices: 57277649--57277835 Score: 259
Period size: 93 Copynumber: 2.0 Consensus size: 94
57277639 CCAACGTATA
* * * *
57277649 AAACGTGGACTTACTCACACACATATATCGGAATCACATATCGATGCCATGGTCTTACTCGCATA
1 AAACATGGACTTACTCACACACATATATAGGAATCACACATCGATGCCATGGTCTTACTCGCACA
* *
57277714 TCATATATCGTAA-TCACATATCGATGCC
66 TCACATATCGGAATTCACATATCGATGCC
* ** *
57277742 AAACATGGTCTTACTTGCACACATGTATAGGAATCACACATCGATGCCATGGTCTTACTCGCACA
1 AAACATGGACTTACTCACACACATATATAGGAATCACACATCGATGCCATGGTCTTACTCGCACA
* *
57277807 TCACATATTGGAATTCACATGTCGATGCC
66 TCACATATCGGAATTCACATATCGATGCC
57277836 TCATATACAT
Statistics
Matches: 81, Mismatches: 12, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
93 67 0.83
94 14 0.17
ACGTcount: A:0.31, C:0.26, G:0.16, T:0.28
Consensus pattern (94 bp):
AAACATGGACTTACTCACACACATATATAGGAATCACACATCGATGCCATGGTCTTACTCGCACA
TCACATATCGGAATTCACATATCGATGCC
Found at i:57278127 original size:31 final size:31
Alignment explanation
Indices: 57278089--57278184 Score: 89
Period size: 31 Copynumber: 3.3 Consensus size: 31
57278079 CTAGAACTCA
57278089 TTCATTACTTTATCATCAAACGTAAATTCTT
1 TTCATTACTTTATCATCAAACGTAAATTCTT
* * * *
57278120 TTCATTAC-TTA--AT---GCTTAGAACTC-A
1 TTCATTACTTTATCATCAAACGTA-AATTCTT
*
57278145 TTCATTACTTTATCATCAAACGTAAATTATT
1 TTCATTACTTTATCATCAAACGTAAATTCTT
57278176 TTCATTACT
1 TTCATTACT
57278185 CAATGCCGAT
Statistics
Matches: 48, Mismatches: 9, Indels: 16
0.66 0.12 0.22
Matches are distributed among these distances:
25 11 0.23
26 7 0.15
28 4 0.08
30 6 0.12
31 20 0.42
ACGTcount: A:0.32, C:0.19, G:0.04, T:0.45
Consensus pattern (31 bp):
TTCATTACTTTATCATCAAACGTAAATTCTT
Found at i:57278166 original size:56 final size:56
Alignment explanation
Indices: 57278080--57278190 Score: 204
Period size: 56 Copynumber: 2.0 Consensus size: 56
57278070 CTTTCAATAC
* *
57278080 TAGAACTCATTCATTACTTTATCATCAAACGTAAATTCTTTTCATTACTTAATGCT
1 TAGAACTCATTCATTACTTTATCATCAAACGTAAATTATTTTCATTACTCAATGCT
57278136 TAGAACTCATTCATTACTTTATCATCAAACGTAAATTATTTTCATTACTCAATGC
1 TAGAACTCATTCATTACTTTATCATCAAACGTAAATTATTTTCATTACTCAATGC
57278191 CGATTCATAA
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
56 53 1.00
ACGTcount: A:0.33, C:0.20, G:0.05, T:0.41
Consensus pattern (56 bp):
TAGAACTCATTCATTACTTTATCATCAAACGTAAATTATTTTCATTACTCAATGCT
Found at i:57283585 original size:18 final size:19
Alignment explanation
Indices: 57283564--57283599 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
57283554 AATAAAGAAA
*
57283564 GGAATTAAA-AAGAAAAGG
1 GGAATAAAATAAGAAAAGG
57283582 GGAATAAAATAAGAAAAG
1 GGAATAAAATAAGAAAAG
57283600 AAAAAGGGGG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.64, C:0.00, G:0.25, T:0.11
Consensus pattern (19 bp):
GGAATAAAATAAGAAAAGG
Found at i:57285013 original size:29 final size:29
Alignment explanation
Indices: 57284946--57285073 Score: 181
Period size: 29 Copynumber: 4.5 Consensus size: 29
57284936 GACAAGATTG
* * *
57284946 GCACTAAGTGTGCGAA---AAATTGTACA
1 GCACTAAGTGTGCGAACTGAAAATATATA
57284972 GCACTAAGTGTGCGAACTGAAAATATATA
1 GCACTAAGTGTGCGAACTGAAAATATATA
*
57285001 GCACTAAGTGTGCGAGCTGAAAATTATATA
1 GCACTAAGTGTGCGAACTGAAAA-TATATA
*
57285031 GCACTAAGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCGAACTGAAAATATATA
57285060 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
57285074 GATTCACTAT
Statistics
Matches: 94, Mismatches: 4, Indels: 5
0.91 0.04 0.05
Matches are distributed among these distances:
26 16 0.17
29 49 0.52
30 29 0.31
ACGTcount: A:0.37, C:0.15, G:0.24, T:0.24
Consensus pattern (29 bp):
GCACTAAGTGTGCGAACTGAAAATATATA
Found at i:57285042 original size:59 final size:55
Alignment explanation
Indices: 57284946--57285073 Score: 193
Period size: 59 Copynumber: 2.3 Consensus size: 55
57284936 GACAAGATTG
*
57284946 GCACTAAGTGTGCGAAAAATTGTACAGCACTAAGTGTGCGAACTGAAAATATATA
1 GCACTAAGTGTGCGAAAAATTATACAGCACTAAGTGTGCGAACTGAAAATATATA
* *
57285001 GCACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCGA----AAAATTATACAGCACTAAGTGTGCGAACTGAAAATATATA
57285060 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
57285074 GATTCACTAT
Statistics
Matches: 66, Mismatches: 3, Indels: 4
0.90 0.04 0.05
Matches are distributed among these distances:
55 15 0.23
59 51 0.77
ACGTcount: A:0.37, C:0.15, G:0.24, T:0.24
Consensus pattern (55 bp):
GCACTAAGTGTGCGAAAAATTATACAGCACTAAGTGTGCGAACTGAAAATATATA
Found at i:57285085 original size:29 final size:29
Alignment explanation
Indices: 57284971--57285073 Score: 188
Period size: 29 Copynumber: 3.5 Consensus size: 29
57284961 AAAATTGTAC
*
57284971 AGCACTAAGTGTGCGAACTGAAAATATAT
1 AGCACTAAGTGTGCGAGCTGAAAATATAT
57285000 AGCACTAAGTGTGCGAGCTGAAAATTATAT
1 AGCACTAAGTGTGCGAGCTGAAAA-TATAT
57285030 AGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAGCTGAAAATATAT
57285059 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
57285074 GATTCACTAT
Statistics
Matches: 72, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
29 43 0.60
30 29 0.40
ACGTcount: A:0.37, C:0.15, G:0.24, T:0.24
Consensus pattern (29 bp):
AGCACTAAGTGTGCGAGCTGAAAATATAT
Found at i:57293051 original size:29 final size:30
Alignment explanation
Indices: 57292985--57293057 Score: 121
Period size: 30 Copynumber: 2.5 Consensus size: 30
57292975 GACAAGATTG
* *
57292985 GCACTAAGTGTGCGGGTTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
57293015 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
57293044 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
57293058 GATTCACTAT
Statistics
Matches: 41, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
29 20 0.49
30 21 0.51
ACGTcount: A:0.33, C:0.14, G:0.27, T:0.26
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGCTGAAAATTATATA
Found at i:57293069 original size:29 final size:29
Alignment explanation
Indices: 57292985--57293061 Score: 111
Period size: 29 Copynumber: 2.6 Consensus size: 29
57292975 GACAAGATTG
*
57292985 GCACTAAGTGTGCGGGTTGAAAATTATATA
1 GCACTAAGTGTGCGGATTGAAAA-TATATA
*
57293015 GCACTAAGTGTGC-GAGCTGAAAATATATA
1 GCACTAAGTGTGCGGA-TTGAAAATATATA
57293044 GCACTAAGTGTGCGGATT
1 GCACTAAGTGTGCGGATT
57293062 CACTATATGC
Statistics
Matches: 42, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
29 21 0.50
30 21 0.50
ACGTcount: A:0.32, C:0.13, G:0.27, T:0.27
Consensus pattern (29 bp):
GCACTAAGTGTGCGGATTGAAAATATATA
Found at i:57294832 original size:15 final size:15
Alignment explanation
Indices: 57294812--57294848 Score: 65
Period size: 15 Copynumber: 2.5 Consensus size: 15
57294802 GACAAAAGGT
57294812 ATGTCCATCAATGGA
1 ATGTCCATCAATGGA
57294827 ATGTCCATCAATGGA
1 ATGTCCATCAATGGA
*
57294842 GTGTCCA
1 ATGTCCA
57294849 AAATGATTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.27
Consensus pattern (15 bp):
ATGTCCATCAATGGA
Found at i:57301221 original size:49 final size:48
Alignment explanation
Indices: 57301162--57301304 Score: 202
Period size: 49 Copynumber: 3.0 Consensus size: 48
57301152 CGGCACTTTG
57301162 TGTGAGAGTAATACCTTGATTTGGCTACGGGCCATGGTATAGGTACTA
1 TGTGAGAGTAATACCTTGATTTGGCTACGGGCCATGGTATAGGTACTA
*
57301210 TGTGAGGAGTAATACCTTGATTTGGCTACGGGCCATGGTATAGGTACTC
1 TGTGA-GAGTAATACCTTGATTTGGCTACGGGCCATGGTATAGGTACTA
* * *
57301259 CG-G-GA-TAAGTTACCTTGATTTGGCTACAGGCCTTGGTATAGGTACT
1 TGTGAGAGTAA--TACCTTGATTTGGCTACGGGCCATGGTATAGGTACT
57301305 TATCGGTTGT
Statistics
Matches: 88, Mismatches: 4, Indels: 7
0.89 0.04 0.07
Matches are distributed among these distances:
45 3 0.03
46 2 0.02
47 34 0.39
48 6 0.07
49 43 0.49
ACGTcount: A:0.23, C:0.16, G:0.29, T:0.31
Consensus pattern (48 bp):
TGTGAGAGTAATACCTTGATTTGGCTACGGGCCATGGTATAGGTACTA
Found at i:57309084 original size:17 final size:18
Alignment explanation
Indices: 57309062--57309096 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
57309052 TACACGGGCA
57309062 TAAATG-TAAAATTTTTC
1 TAAATGTTAAAATTTTTC
57309079 TAAATGTTTAAAATTTTT
1 TAAATG-TTAAAATTTTT
57309097 TATATATGAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 6 0.38
19 10 0.62
ACGTcount: A:0.40, C:0.03, G:0.06, T:0.51
Consensus pattern (18 bp):
TAAATGTTAAAATTTTTC
Found at i:57315045 original size:12 final size:10
Alignment explanation
Indices: 57315002--57315043 Score: 59
Period size: 11 Copynumber: 4.1 Consensus size: 10
57314992 GAACAGATGT
57315002 TTTGGTATGA
1 TTTGGTATGA
57315012 TTTTGGTATAGA
1 -TTTGGTAT-GA
57315024 TTTGGTATGA
1 TTTGGTATGA
57315034 TTTGGT-TGA
1 TTTGGTATGA
57315043 T
1 T
57315044 GAGTTGAGAA
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
9 4 0.13
10 8 0.27
11 16 0.53
12 2 0.07
ACGTcount: A:0.19, C:0.00, G:0.29, T:0.52
Consensus pattern (10 bp):
TTTGGTATGA
Found at i:57317054 original size:47 final size:46
Alignment explanation
Indices: 57316986--57317254 Score: 228
Period size: 47 Copynumber: 5.8 Consensus size: 46
57316976 TTTGTGAACT
57316986 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCACATTATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGG-CACA-TATGAGAGCC
* * * *
57317032 AGTGTAAGACCATGTTTGGGACATGGCATCGGCATTGAGATGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCA--CATATGAGAGCC
* * *
57317080 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTACGAGATGATAGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGC-AC-ATATGAGAGCC
* * * *
57317126 AGTGTAAGACAATGTCTGGTACATGGCATCGACTTGAGATAT--GAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGC---ACATATGAGAGCC
* * * *
57317173 AGTGTAAGACCGTGTCTGGGACATGGCATCGACATGAGAT-ATGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCA-CATATGA-GAGCC
* * *
57317220 ATTGTAAGACCGTGTCTGGGACATGGCATCAGCAC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCAC
57317255 CTTACCGATG
Statistics
Matches: 185, Mismatches: 25, Indels: 26
0.78 0.11 0.11
Matches are distributed among these distances:
44 1 0.01
45 4 0.02
46 34 0.18
47 110 0.59
48 31 0.17
49 4 0.02
50 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.23
Consensus pattern (46 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCACATATGAGAGCC
Found at i:57317150 original size:94 final size:92
Alignment explanation
Indices: 57316984--57317249 Score: 322
Period size: 94 Copynumber: 2.8 Consensus size: 92
57316974 TGTTTGTGAA
* * *
57316984 CTAGTGTAAGACATGTCTGGGACATGCATCGGCCAC-ATTATGAGAGCCAGTGTAAGACCATGTT
1 CTAGTGTAAGACATGTCTGGGACATGCATCGG-CACGA-GATGATAGCCAGTGTAAGACCATGTC
*
57317048 TGGGACATGGCATCGGCATTGAGATGA-GAG
64 TGGGACATGGCATCGAC-TTGAGAT-ATGAG
* *
57317078 CTAGTGTAAGACATGTCTGGGACATGCATCGGCTACGAGATGATAGTCAGTGTAAGACAATGTCT
1 CTAGTGTAAGACATGTCTGGGACATGCATCGGC-ACGAGATGATAGCCAGTGTAAGACCATGTCT
*
57317143 GGTACATGGCATCGACTTGAGATATGAG
65 GGGACATGGCATCGACTTGAGATATGAG
* * * * * *
57317171 CCAGTGTAAGACCGTGTCTGGGACATGGCATCGACATGAGAT-ATGAGCCATTGTAAGACCGTGT
1 CTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCACGAGATGAT-AGCCAGTGTAAGACCATGT
57317235 CTGGGACATGGCATC
63 CTGGGACATGGCATC
57317250 AGCACCTTAC
Statistics
Matches: 150, Mismatches: 16, Indels: 12
0.84 0.09 0.07
Matches are distributed among these distances:
92 1 0.01
93 23 0.15
94 118 0.79
95 8 0.05
ACGTcount: A:0.27, C:0.18, G:0.30, T:0.24
Consensus pattern (92 bp):
CTAGTGTAAGACATGTCTGGGACATGCATCGGCACGAGATGATAGCCAGTGTAAGACCATGTCTG
GGACATGGCATCGACTTGAGATATGAG
Found at i:57319659 original size:14 final size:15
Alignment explanation
Indices: 57319635--57319664 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
57319625 GGATATCAAA
57319635 ACAAGAATTAAGAAC
1 ACAAGAATTAAGAAC
57319650 ACAA-AATTAAGAAC
1 ACAAGAATTAAGAAC
57319664 A
1 A
57319665 AGTTAAATAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.73
15 4 0.27
ACGTcount: A:0.63, C:0.13, G:0.10, T:0.13
Consensus pattern (15 bp):
ACAAGAATTAAGAAC
Found at i:57321152 original size:47 final size:45
Alignment explanation
Indices: 57321052--57321311 Score: 179
Period size: 47 Copynumber: 5.6 Consensus size: 45
57321042 TACAAGTGCT
* * * *
57321052 GATGCATGTCCCAGACATGTCTTACACTAGCACAAAGCTTA-GCC
1 GATGCATGTCCCAGACACGTCTTACACTGGCACACATCTTAGGCC
*
57321096 GATGCATGTCCCAAACACGTCTTACACTGGCTAC-CATCATTGAGGCC
1 GATGCATGTCCCAGACACGTCTTACACTGGC-ACACATC-TT-AGGCC
* * **
57321143 GATGCATGTCCCAGACATGTCTTACACTGGCACTCATCTCTACACC
1 GATGCATGTCCCAGACACGTCTTACACTGGCACACATCT-TAGGCC
* * * * *
57321189 AATGCCATGTCCCAGACATGGTCTTACGCTGGCTATCGTA-AT-GT-GGCT
1 GATG-CATGTCCCAGACA-CGTCTTACACTGGC-A-C--ACATCTTAGGCC
* * * * * *
57321237 GATGCATGTCCCAGACACGTCTTACACTAGCCCTCGTCTCAATGCC
1 GATGCATGTCCCAGACACGTCTTACACTGGCACACATCT-TAGGCC
*
57321283 GATGCCATGTCCCAGACATGGTCTTACAC
1 GATG-CATGTCCCAGACA-CGTCTTACAC
57321312 CGACTCTCAC
Statistics
Matches: 169, Mismatches: 29, Indels: 32
0.73 0.13 0.14
Matches are distributed among these distances:
43 1 0.01
44 31 0.18
45 4 0.02
46 27 0.16
47 76 0.45
48 25 0.15
49 2 0.01
50 1 0.01
51 2 0.01
ACGTcount: A:0.24, C:0.32, G:0.19, T:0.25
Consensus pattern (45 bp):
GATGCATGTCCCAGACACGTCTTACACTGGCACACATCTTAGGCC
Found at i:57321259 original size:94 final size:93
Alignment explanation
Indices: 57320953--57321311 Score: 341
Period size: 94 Copynumber: 3.8 Consensus size: 93
57320943 TTAAGTTGTC
* * * *
57320953 GATGCCATGTCCCAGACATGGTCTTACACTGGCTA-TCTTCATCGAGGCCAATGCCATGTCCTAG
1 GATG-CATGTCCCAGACAT-GTCTTACACTAGC-ACTCATC-TCTA-GCCAATGCCATGTCCCAG
* * * *
57321017 ACATGGTCTTACACTAGCTCTTGTGTACAAGT-GCT
61 ACATGGTCTTACACTGGCT-AT-CGTA-ATGTGGCT
** * * * *
57321052 GATGCATGTCCCAGACATGTCTTACACTAGCACAAAGCT-TAGCCGATG-CATGTCCCAAACA-C
1 GATGCATGTCCCAGACATGTCTTACACTAGCACTCATCTCTAGCCAATGCCATGTCCCAGACATG
* * * * *
57321114 GTCTTACACTGGCTACCATCATTGAGGCC
66 GTCTTACACTGGCTATCGT-AATGTGGCT
* *
57321143 GATGCATGTCCCAGACATGTCTTACACTGGCACTCATCTCTACACCAATGCCATGTCCCAGACAT
1 GATGCATGTCCCAGACATGTCTTACACTAGCACTCATCTCTA-GCCAATGCCATGTCCCAGACAT
*
57321208 GGTCTTACGCTGGCTATCGTAATGTGGCT
65 GGTCTTACACTGGCTATCGTAATGTGGCT
* * * * *
57321237 GATGCATGTCCCAGACACGTCTTACACTAGCCCTCGTCTCAATGCCGATGCCATGTCCCAGACAT
1 GATGCATGTCCCAGACATGTCTTACACTAGCACTCATCTCTA-GCCAATGCCATGTCCCAGACAT
57321302 GGTCTTACAC
65 GGTCTTACAC
57321312 CGACTCTCAC
Statistics
Matches: 211, Mismatches: 42, Indels: 19
0.78 0.15 0.07
Matches are distributed among these distances:
90 2 0.01
91 38 0.18
92 15 0.07
93 16 0.08
94 90 0.43
95 17 0.08
96 2 0.01
97 13 0.06
98 14 0.07
99 4 0.02
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.26
Consensus pattern (93 bp):
GATGCATGTCCCAGACATGTCTTACACTAGCACTCATCTCTAGCCAATGCCATGTCCCAGACATG
GTCTTACACTGGCTATCGTAATGTGGCT
Found at i:57324848 original size:40 final size:40
Alignment explanation
Indices: 57324799--57325006 Score: 240
Period size: 40 Copynumber: 5.2 Consensus size: 40
57324789 TCTTCGGAAT
* * *
57324799 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
* * ** * * *
57324838 TTAACCCGGATTTGGTAACTTGTACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
* * *
57324878 TTAGCCTGGATATAA-CAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAATC-ACTAGCACAAATGCCTTCGGGTC
* *
57324918 TTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
* *
57324958 TTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
57324998 TTAGCCCGG
1 TTAGCCCGG
57325007 GTATCATTCA
Statistics
Matches: 142, Mismatches: 24, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
39 3 0.02
40 138 0.97
41 1 0.01
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (40 bp):
TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
Found at i:57329588 original size:40 final size:40
Alignment explanation
Indices: 57329461--57329590 Score: 147
Period size: 40 Copynumber: 3.2 Consensus size: 40
57329451 ATGCTGGAAA
* * *
57329461 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * ***
57329501 CTACATCCGGGCTAAGACCCGAAGGCATTCT-TGCGAGACA
1 TTATATCCGGGCTAAGACCCGAAGGCATT-TGTGCGAGTGG
*
57329541 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
57329581 TTATATCCGG
1 TTATATCCGG
57329591 TTATATTCCG
Statistics
Matches: 72, Mismatches: 15, Indels: 6
0.77 0.16 0.06
Matches are distributed among these distances:
39 2 0.03
40 69 0.96
41 1 0.01
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:57329589 original size:80 final size:80
Alignment explanation
Indices: 57329423--57329590 Score: 207
Period size: 80 Copynumber: 2.1 Consensus size: 80
57329413 AAATTGAATA
* *
57329423 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCA
57329488 ATTGTGCTAGTGGCT
66 ATTGTGCTAGTGGCT
* * * * *
57329503 ACATCCGGGCTAAGACCCGAAGGC-ATTCTTGC-GAGACATTCTATCCGGGCTAAGACCCGAAGG
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTG-GAAATTATATCCGGGCTAAGACCCGAAGG
* *
57329566 CATTTGTGC-ACGTGGTT
64 CAATTGTGCTA-GTGGCT
57329583 ATATCCGG
1 ATATCCGG
57329591 TTATATTCCG
Statistics
Matches: 75, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
79 5 0.07
80 70 0.93
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCA
ATTGTGCTAGTGGCT
Found at i:57333481 original size:47 final size:46
Alignment explanation
Indices: 57333369--57333633 Score: 205
Period size: 47 Copynumber: 5.7 Consensus size: 46
57333359 ATTTGTTTGT
** * *
57333369 GAGCTAGTGTAAGACATGTCTAGGACAT-GCATCAGAC-ACATTATGA
1 GAGCTAGTGTAAGACATGTCTAGGACATGGCATC-GACTTGA-GATAA
* * *
57333415 GAGCTAGTGTAAGACCATGTCTGGGACATGGAATCGACATTGAGACAA
1 GAGCTAGTGTAAGA-CATGTCTAGGACATGGCATCGAC-TTGAGATAA
* * * *
57333463 GAGCTAGTGTAAGACATGTCTAGGACAT-CCATCGGCTACGAGATGA
1 GAGCTAGTGTAAGACATGTCTAGGACATGGCATCGACT-TGAGATAA
* * * * * *
57333509 TAG-TCAGTGTAAGACAGTTTTTGGGACATGGCATTGACTTGAGATAT
1 GAGCT-AGTGTAAGACA-TGTCTAGGACATGGCATCGACTTGAGATAA
* * * * *
57333556 GAGCCAGTGTAAGACTGTGTCTGGGATATGGCATCGACTTGAGATAT
1 GAGCTAGTGTAAGAC-ATGTCTAGGACATGGCATCGACTTGAGATAA
* *
57333603 GAGCCAGTGTAAGACTGTGTCTAGGACATGG
1 GAGCTAGTGTAAGAC-ATGTCTAGGACATGG
57333634 AATTGGTACC
Statistics
Matches: 176, Mismatches: 33, Indels: 19
0.77 0.14 0.08
Matches are distributed among these distances:
45 2 0.01
46 37 0.21
47 110 0.62
48 26 0.15
49 1 0.01
ACGTcount: A:0.30, C:0.16, G:0.29, T:0.25
Consensus pattern (46 bp):
GAGCTAGTGTAAGACATGTCTAGGACATGGCATCGACTTGAGATAA
Found at i:57333534 original size:94 final size:93
Alignment explanation
Indices: 57333369--57333570 Score: 232
Period size: 94 Copynumber: 2.2 Consensus size: 93
57333359 ATTTGTTTGT
* *
57333369 GAGCTAGTGTAAGACATGTCTAGGACATGCATCAGACACATTATGAGAGCTAGTGTAAGACCATG
1 GAGCTAGTGTAAGACATGTCTAGGACATCCATCAGACACATGATGAGAGCTAGTGTAAGACCATG
57333434 TCTGGGACATGGAATCGACATTGAGACAA
66 TCTGGGACATGGAATCGAC-TTGAGACAA
* *
57333463 GAGCTAGTGTAAGACATGTCTAGGACATCCATC-GGCTACGA-GATGATAG-TCAGTGTAAGA-C
1 GAGCTAGTGTAAGACATGTCTAGGACATCCATCAGAC-AC-ATGATGAGAGCT-AGTGTAAGACC
* * * * * *
57333524 AGTTTTTGGGACATGGCATTGACTTGAGATAT
63 A-TGTCTGGGACATGGAATCGACTTGAGACAA
*
57333556 GAGCCAGTGTAAGAC
1 GAGCTAGTGTAAGAC
57333571 TGTGTCTGGG
Statistics
Matches: 93, Mismatches: 11, Indels: 9
0.82 0.10 0.08
Matches are distributed among these distances:
93 26 0.28
94 66 0.71
95 1 0.01
ACGTcount: A:0.32, C:0.16, G:0.28, T:0.24
Consensus pattern (93 bp):
GAGCTAGTGTAAGACATGTCTAGGACATCCATCAGACACATGATGAGAGCTAGTGTAAGACCATG
TCTGGGACATGGAATCGACTTGAGACAA
Found at i:57333600 original size:94 final size:94
Alignment explanation
Indices: 57333369--57333636 Score: 226
Period size: 94 Copynumber: 2.9 Consensus size: 94
57333359 ATTTGTTTGT
* * * *
57333369 GAGCTAGTGTAAGACATGTCTAGGACATGCATCAGAC-AC-A-TTATGAGAGCTAGTGTAAGACC
1 GAGCCAGTGTAAGACATGTCTAGGACATCCATC-GACTACGAGATAT--GAGCCAGTGTAAGA-C
* *
57333431 A-TGTCTGGGACATGGAATCGACATTGAGACAA
62 AGTTTTTGGGACATGGAATCGACATTGAGACAA
* * *
57333463 GAGCTAGTGTAAGACATGTCTAGGACATCCATCGGCTACGAGATGAT-AGTCAGTGTAAGACAGT
1 GAGCCAGTGTAAGACATGTCTAGGACATCCATCGACTACGAGAT-ATGAGCCAGTGTAAGACAGT
* * * *
57333527 TTTTGGGACATGGCATTGAC-TTGAGATAT
65 TTTTGGGACATGGAATCGACATTGAGACAA
* * * * * *
57333556 GAGCCAGTGTAAGACTGTGTCTGGGATATGGCATCGACT-TGAGATATGAGCCAGTGTAAGACTG
1 GAGCCAGTGTAAGAC-ATGTCTAGGACAT-CCATCGACTACGAGATATGAGCCAGTGTAAGACAG
* * *
57333620 TGTCTAGGACATGGAAT
64 TTTTTGGGACATGGAAT
57333637 TGGTACCTTA
Statistics
Matches: 142, Mismatches: 24, Indels: 16
0.78 0.13 0.09
Matches are distributed among these distances:
93 27 0.19
94 104 0.73
95 8 0.06
96 1 0.01
97 2 0.01
ACGTcount: A:0.30, C:0.16, G:0.29, T:0.25
Consensus pattern (94 bp):
GAGCCAGTGTAAGACATGTCTAGGACATCCATCGACTACGAGATATGAGCCAGTGTAAGACAGTT
TTTGGGACATGGAATCGACATTGAGACAA
Found at i:57336432 original size:27 final size:27
Alignment explanation
Indices: 57336402--57336518 Score: 135
Period size: 27 Copynumber: 4.3 Consensus size: 27
57336392 ACGTACCTGA
*
57336402 ACCCTCATGTGATAAAATGATGATTTT
1 ACCCTCATGTGATAAAATGACGATTTT
* *
57336429 ACCCTTATATGATAAAATGACGATTTT
1 ACCCTCATGTGATAAAATGACGATTTT
** * *
57336456 GTCCTCACGTGATAAAATGATGATTTT
1 ACCCTCATGTGATAAAATGACGATTTT
* * *
57336483 TCCCTTATGTGATAAAATGACGACTTAT
1 ACCCTCATGTGATAAAATGACGA-TTTT
57336511 ACCCTCAT
1 ACCCTCAT
57336519 AGGGTAAAAT
Statistics
Matches: 72, Mismatches: 17, Indels: 1
0.80 0.19 0.01
Matches are distributed among these distances:
27 63 0.88
28 9 0.12
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (27 bp):
ACCCTCATGTGATAAAATGACGATTTT
Found at i:57336547 original size:27 final size:28
Alignment explanation
Indices: 57336512--57336612 Score: 136
Period size: 27 Copynumber: 3.7 Consensus size: 28
57336502 ACGACTTATA
**
57336512 CCCTCATAGGGTAAAATGAGTGAAATAC
1 CCCTCATAGGGTAAAATGACCGAAATAC
57336540 CCCT-ATAGGGTAAAATGACCGAAATA-
1 CCCTCATAGGGTAAAATGACCGAAATAC
* *
57336566 CCCTCATAGGGTAGAATGACCAAAATAC
1 CCCTCATAGGGTAAAATGACCGAAATAC
*
57336594 CCCT-ATAAGGTAAAATGAC
1 CCCTCATAGGGTAAAATGAC
57336613 TGCAATATCC
Statistics
Matches: 65, Mismatches: 6, Indels: 5
0.86 0.08 0.07
Matches are distributed among these distances:
26 4 0.06
27 53 0.82
28 8 0.12
ACGTcount: A:0.41, C:0.21, G:0.19, T:0.20
Consensus pattern (28 bp):
CCCTCATAGGGTAAAATGACCGAAATAC
Found at i:57336584 original size:54 final size:54
Alignment explanation
Indices: 57336509--57336639 Score: 163
Period size: 54 Copynumber: 2.4 Consensus size: 54
57336499 ATGACGACTT
*** *
57336509 ATACCCTCATAGGGTAAAATGAGTGAAATACCCCTATAGGGTAAAATGACCGAA
1 ATACCCTCATAGGGTAAAATGACCAAAATACCCCTATAAGGTAAAATGACCGAA
* * *
57336563 ATACCCTCATAGGGTAGAATGACCAAAATACCCCTATAAGGTAAAATGACTGCA
1 ATACCCTCATAGGGTAAAATGACCAAAATACCCCTATAAGGTAAAATGACCGAA
* ** *
57336617 ATATCCTGGTAAGGTAAAATGAC
1 ATACCCTCATAGGGTAAAATGAC
57336640 AGATTTGTTC
Statistics
Matches: 65, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
54 65 1.00
ACGTcount: A:0.40, C:0.19, G:0.19, T:0.21
Consensus pattern (54 bp):
ATACCCTCATAGGGTAAAATGACCAAAATACCCCTATAAGGTAAAATGACCGAA
Found at i:57336619 original size:27 final size:27
Alignment explanation
Indices: 57336509--57336639 Score: 131
Period size: 27 Copynumber: 4.9 Consensus size: 27
57336499 ATGACGACTT
**
57336509 ATACCCTCATAGGGTAAAATGAGTGAA
1 ATACCCTCATAGGGTAAAATGACCGAA
57336536 ATACCC-CTATAGGGTAAAATGACCGAA
1 ATACCCTC-ATAGGGTAAAATGACCGAA
* *
57336563 ATACCCTCATAGGGTAGAATGACCAAA
1 ATACCCTCATAGGGTAAAATGACCGAA
* * *
57336590 ATACCC-CTATAAGGTAAAATGACTGCA
1 ATACCCTC-ATAGGGTAAAATGACCGAA
* ** *
57336617 ATATCCTGGTAAGGTAAAATGAC
1 ATACCCTCATAGGGTAAAATGAC
57336640 AGATTTGTTC
Statistics
Matches: 88, Mismatches: 12, Indels: 8
0.81 0.11 0.07
Matches are distributed among these distances:
26 2 0.02
27 85 0.97
28 1 0.01
ACGTcount: A:0.40, C:0.19, G:0.19, T:0.21
Consensus pattern (27 bp):
ATACCCTCATAGGGTAAAATGACCGAA
Found at i:57337070 original size:34 final size:34
Alignment explanation
Indices: 57337029--57337096 Score: 100
Period size: 34 Copynumber: 2.0 Consensus size: 34
57337019 ATACTGATTC
57337029 CTATTACTAAAACAGGCTAAAGCCCAGACTGCTA
1 CTATTACTAAAACAGGCTAAAGCCCAGACTGCTA
** * *
57337063 CTATTACTAAAATGGGCTAAGGCCCAGATTGCTA
1 CTATTACTAAAACAGGCTAAAGCCCAGACTGCTA
57337097 GTGTCACTGA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
34 30 1.00
ACGTcount: A:0.35, C:0.24, G:0.18, T:0.24
Consensus pattern (34 bp):
CTATTACTAAAACAGGCTAAAGCCCAGACTGCTA
Found at i:57342001 original size:40 final size:40
Alignment explanation
Indices: 57341937--57342012 Score: 107
Period size: 40 Copynumber: 1.9 Consensus size: 40
57341927 ACTATGTTCG
* * *
57341937 GCACTAAGTGTGCGATTTGAAATAGCTTCGGCTATAAATA
1 GCACTAAGAGTGCGAATTGAAATAGCTTCAGCTATAAATA
* *
57341977 GCACTAAGAGTGCTAATTGGAATAGCTTCAGCTATA
1 GCACTAAGAGTGCGAATTGAAATAGCTTCAGCTATA
57342013 TGTGGCAATA
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 31 1.00
ACGTcount: A:0.33, C:0.16, G:0.22, T:0.29
Consensus pattern (40 bp):
GCACTAAGAGTGCGAATTGAAATAGCTTCAGCTATAAATA
Found at i:57344335 original size:55 final size:53
Alignment explanation
Indices: 57344248--57344502 Score: 215
Period size: 55 Copynumber: 4.8 Consensus size: 53
57344238 ATTAGGGTTT
57344248 AAGGATACCATGTAAGACCATGCCAA-AGCATGGCAATTGGTAAGGTTTCTAAGGG
1 AAGGATACCATGTAAGACCATGCCAAGA-CATGGCAATTGGTAA-GTTTCTAA-GG
* * ** * *
57344303 AAGGATACCATGTAAGACTATGTCAAGACATGGC-ATTTATAAGTTACTATAAGACA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTT--TCTAAG--G
* * *
57344359 AAGG-TCCCATGTAAGACCATGCCAAGGCATGGC-ATTGGTGAG-TTCATAAGG
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTC-TAAGG
*** *
57344410 CAAGGATACCATGTAAGACCATGTTGAGACATGGCAA-TGGTAAGCTTC-AA--
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTCTAAGG
* * *
57344460 AAGGATACCACGTAAGACCATGACAAGTCATGGCAA-TGGTAAG
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAG
57344503 GTACCTATAT
Statistics
Matches: 164, Mismatches: 26, Indels: 26
0.76 0.12 0.12
Matches are distributed among these distances:
49 38 0.23
52 7 0.04
53 37 0.23
54 12 0.07
55 65 0.40
56 5 0.03
ACGTcount: A:0.36, C:0.17, G:0.25, T:0.22
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTCTAAGG
Found at i:57347749 original size:84 final size:84
Alignment explanation
Indices: 57347608--57347777 Score: 304
Period size: 84 Copynumber: 2.0 Consensus size: 84
57347598 GTTTCCCGGT
* *
57347608 TGATCTGATGCTATTACCATTTAATGAATTTGATGTGATTCTTGGTACGGATTGGTTGACTACAC
1 TGATCTCATGCTATTACCATTTAATGAATTGGATGTGATTCTTGGTACGGATTGGTTGACTACAC
57347673 ATGATGTGATAGTGAATTG
66 ATGATGTGATAGTGAATTG
* *
57347692 TGATCTCATGCTATTGCCATTTAATGAATTGGATGTGATTCTTGGTATGGATTGGTTGACTACAC
1 TGATCTCATGCTATTACCATTTAATGAATTGGATGTGATTCTTGGTACGGATTGGTTGACTACAC
57347757 ATGATGTGATAGTGAATTG
66 ATGATGTGATAGTGAATTG
57347776 TG
1 TG
57347778 GAAAGAAATT
Statistics
Matches: 82, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
84 82 1.00
ACGTcount: A:0.25, C:0.11, G:0.25, T:0.39
Consensus pattern (84 bp):
TGATCTCATGCTATTACCATTTAATGAATTGGATGTGATTCTTGGTACGGATTGGTTGACTACAC
ATGATGTGATAGTGAATTG
Found at i:57348128 original size:15 final size:15
Alignment explanation
Indices: 57348108--57348138 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
57348098 TTGGAATTAA
57348108 AAGAATTGAAACCTT
1 AAGAATTGAAACCTT
*
57348123 AAGAATTGAAAGCTT
1 AAGAATTGAAACCTT
57348138 A
1 A
57348139 GTTGCAGGAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.48, C:0.10, G:0.16, T:0.26
Consensus pattern (15 bp):
AAGAATTGAAACCTT
Found at i:57353574 original size:40 final size:39
Alignment explanation
Indices: 57353519--57353681 Score: 186
Period size: 40 Copynumber: 4.1 Consensus size: 39
57353509 TGAATGATAC
* * *
57353519 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTG-TTATAT
*
57353559 CCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCAATT-GTGCTAG-TGTTATAT
* * *
57353599 CCGGGCTAAGACCCGAAGGCAATTGTGCAAGT-TACCAAAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGT--TATAT
* *
57353639 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGTTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGTTATAT
57353678 CCGG
1 CCGG
57353682 TTAAATCCCG
Statistics
Matches: 105, Mismatches: 12, Indels: 13
0.81 0.09 0.10
Matches are distributed among these distances:
38 1 0.01
39 10 0.10
40 88 0.84
41 6 0.06
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (39 bp):
CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGTTATAT
Found at i:57361580 original size:40 final size:39
Alignment explanation
Indices: 57361525--57361687 Score: 186
Period size: 40 Copynumber: 4.1 Consensus size: 39
57361515 TGAATGATAC
* * *
57361525 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTG-TTATAT
*
57361565 CCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCAATT-GTGCTAG-TGTTATAT
* * *
57361605 CCGGGCTAAGACCCGAAGGCAATTGTGCAAGT-TACCAAAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGT--TATAT
* *
57361645 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGTTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGTTATAT
57361684 CCGG
1 CCGG
57361688 TTAAATCCCG
Statistics
Matches: 105, Mismatches: 12, Indels: 13
0.81 0.09 0.10
Matches are distributed among these distances:
38 1 0.01
39 10 0.10
40 88 0.84
41 6 0.06
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (39 bp):
CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGTTATAT
Found at i:57363362 original size:55 final size:54
Alignment explanation
Indices: 57363275--57363529 Score: 244
Period size: 55 Copynumber: 4.8 Consensus size: 54
57363265 ATTAGGGTTT
** *
57363275 AAGGATACTGTGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAA-GTTTCTAAGGC
* * * *
57363330 AAGGATACCATGTAAGACCATGTCAAGACATGGC-ATTGATAAGTTAATATAAGGGA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTT--TCTAA-GGC
* *
57363386 AAGG-T-CCTATGTAAGACCATGCCAAGGCATGGC-ATTGGTGAG-TTCATAAGGC
1 AAGGATACC-ATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTC-TAAGGC
* *
57363438 AAGGATACCATGTAAGACCATGTCGAGACATGGCAA-TGGTAAGTTTC-AA---
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTCTAAGGC
* * * *
57363487 AAGGATACCACGTAAGACCATGACAAGTCATGG-AAATGGTAAG
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAG
57363530 GTACTTATGT
Statistics
Matches: 169, Mismatches: 21, Indels: 26
0.78 0.10 0.12
Matches are distributed among these distances:
48 2 0.01
49 36 0.21
52 9 0.05
53 35 0.21
54 16 0.09
55 65 0.38
56 6 0.04
ACGTcount: A:0.36, C:0.16, G:0.26, T:0.22
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTCTAAGGC
Found at i:57363481 original size:108 final size:110
Alignment explanation
Indices: 57363285--57363482 Score: 330
Period size: 108 Copynumber: 1.8 Consensus size: 110
57363275 AAGGATACTG
57363285 TGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGATACCATGTAAGACCA
1 TGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGATACCATGTAAGACCA
*
57363350 TGTCAAGACATGGCATTGATAAGTTAATATAAGGGAAAGGTCCTA
66 TGTCAAGACATGGCAATGATAAGTTAATATAAGGGAAAGGTCCTA
*
57363395 TGTAAGACCATGCCAAGGCATGGC-ATTGGTGA-G-TTCATAAGGCAAGGATACCATGTAAGACC
1 TGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTC-TAAGGCAAGGATACCATGTAAGACC
* *
57363457 ATGTCGAGACATGGCAATGGTAAGTT
65 ATGTCAAGACATGGCAATGATAAGTT
57363483 TCAAAAGGAT
Statistics
Matches: 83, Mismatches: 4, Indels: 4
0.91 0.04 0.04
Matches are distributed among these distances:
107 3 0.04
108 49 0.59
109 7 0.08
110 24 0.29
ACGTcount: A:0.34, C:0.16, G:0.27, T:0.23
Consensus pattern (110 bp):
TGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGATACCATGTAAGACCA
TGTCAAGACATGGCAATGATAAGTTAATATAAGGGAAAGGTCCTA
Found at i:57368238 original size:2 final size:2
Alignment explanation
Indices: 57368231--57368265 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
57368221 ACACTTGCGC
*
57368231 AT AT AT AT AT AT AT AT AT AT AT AT CT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
57368266 CACTTTTGCA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:57369223 original size:43 final size:43
Alignment explanation
Indices: 57369162--57369389 Score: 312
Period size: 43 Copynumber: 5.3 Consensus size: 43
57369152 CACATATCGG
* *** * *
57369162 AATCACATATCGTTGCCAACGTATTAAACGTGGTCTTACTCTT
1 AATCACATATCGATGCCAACGTCCCAAACGTGGTCTTACACGT
* *
57369205 AATCACATATCGATGCCAACATCCCAAACGTGGTTTTACACGT
1 AATCACATATCGATGCCAACGTCCCAAACGTGGTCTTACACGT
* *
57369248 AATCACATATCGATGCCAACGTCCCAGACGTGCTCTTACACGT
1 AATCACATATCGATGCCAACGTCCCAAACGTGGTCTTACACGT
* * *
57369291 AATCACATATTGATGCCAACGTCCCAAACGTTGTCTTACACAT
1 AATCACATATCGATGCCAACGTCCCAAACGTGGTCTTACACGT
* * *
57369334 AATCACATATTGATGCCAATGTCCCAAACGTAGTCTTACACGT
1 AATCACATATCGATGCCAACGTCCCAAACGTGGTCTTACACGT
57369377 AATCACATATCGA
1 AATCACATATCGA
57369390 AAATCCTATG
Statistics
Matches: 164, Mismatches: 21, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
43 164 1.00
ACGTcount: A:0.32, C:0.27, G:0.14, T:0.28
Consensus pattern (43 bp):
AATCACATATCGATGCCAACGTCCCAAACGTGGTCTTACACGT
Found at i:57379407 original size:29 final size:29
Alignment explanation
Indices: 57379372--57379445 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
57379362 GTTGTGAGAT
* *
57379372 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
57379401 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
57379430 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
57379446 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:57387422 original size:40 final size:39
Alignment explanation
Indices: 57387361--57387510 Score: 131
Period size: 40 Copynumber: 3.8 Consensus size: 39
57387351 TTGGAATGAT
* * * * *
57387361 ATCCGGGCTAAGTCCCAAAGGCAATTATGCTAGTAATTAC
1 ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTAA-TAA
* * *
57387401 ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAG-TAATAA
** **
57387441 ATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAGTTACCAA
1 ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAG-TAATAA
* *
57387481 ATCCGGGTTAAGACCCGAAGGCAATCGTGC
1 ATCCGGGCTAAGACCCGAAGGCAATTGTGC
57387511 GAATCACTAT
Statistics
Matches: 91, Mismatches: 16, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
39 3 0.03
40 84 0.92
41 4 0.04
ACGTcount: A:0.28, C:0.25, G:0.26, T:0.21
Consensus pattern (39 bp):
ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTAATAA
Found at i:57387462 original size:80 final size:80
Alignment explanation
Indices: 57387359--57387512 Score: 200
Period size: 80 Copynumber: 1.9 Consensus size: 80
57387349 CATTGGAATG
* * ** *
57387359 ATATCCGGGCTAAGTCCCAAAGGCAATTATGCTAGTAATTACATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCAAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCA
*
57387424 TTCGTGCGAGTTGAT
66 ATCGTGCGAGTTGAT
* ** * * *
57387439 ATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAGTTACCAAATCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCAAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCA
57387504 ATCGTGCGA
66 ATCGTGCGA
57387513 ATCACTATAA
Statistics
Matches: 62, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
80 62 1.00
ACGTcount: A:0.29, C:0.24, G:0.26, T:0.21
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCAAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCA
ATCGTGCGAGTTGAT
Found at i:57387527 original size:40 final size:40
Alignment explanation
Indices: 57387403--57387566 Score: 136
Period size: 40 Copynumber: 4.1 Consensus size: 40
57387393 GTAATTACAT
* * * *
57387403 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGA-TATAT
1 CCGGGCTAAGACCCGAAGGCAATCGTGCGA-ATCACTATAA
** * * *
57387443 CCGGGCTAAGACCCGAAGGCCTTTGTGC-AAGTTACCA-AA
1 CCGGGCTAAGACCCGAAGGCAATCGTGCGAA-TCACTATAA
*
57387482 TCCGGGTTAAGACCCGAAGGCAATCGTGCGAATCACTATAA
1 -CCGGGCTAAGACCCGAAGGCAATCGTGCGAATCACTATAA
* * * * * *
57387523 CCGGGCTAGGTCCCGAAGACAATCGAGCGAGTCACTATAT
1 CCGGGCTAAGACCCGAAGGCAATCGTGCGAATCACTATAA
57387563 CCGG
1 CCGG
57387567 TTAAATCCCG
Statistics
Matches: 100, Mismatches: 19, Indels: 10
0.78 0.15 0.08
Matches are distributed among these distances:
39 4 0.04
40 92 0.92
41 4 0.04
ACGTcount: A:0.27, C:0.26, G:0.27, T:0.19
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCAATCGTGCGAATCACTATAA
Found at i:57387565 original size:80 final size:80
Alignment explanation
Indices: 57387401--57387580 Score: 177
Period size: 80 Copynumber: 2.3 Consensus size: 80
57387391 TAGTAATTAC
* * * * * * **
57387401 ATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCCTT
1 ATCCGGGTTAAGACCCGAAGGCAATCGTGCGAGATCATATAACCGGGCTAAGACCCGAAGACAAT
* * *
57387466 TGTGCAAGTTACCAA
66 CGAGCAAGTCACCAA
* *
57387481 ATCCGGGTTAAGACCCGAAGGCAATCGTGCGA-ATCACTATAACCGGGCTAGGTCCCGAAGACAA
1 ATCCGGGTTAAGACCCGAAGGCAATCGTGCGAGATCA-TATAACCGGGCTAAGACCCGAAGACAA
* * *
57387545 TCGAGCGAGTCACTAT
65 TCGAGCAAGTCACCAA
57387561 ATCC-GGTTAA-ATCCCGAAGG
1 ATCCGGGTTAAGA-CCCGAAGG
57387581 TACGTGATTC
Statistics
Matches: 82, Mismatches: 16, Indels: 5
0.80 0.16 0.05
Matches are distributed among these distances:
78 1 0.01
79 16 0.20
80 65 0.79
ACGTcount: A:0.28, C:0.26, G:0.27, T:0.19
Consensus pattern (80 bp):
ATCCGGGTTAAGACCCGAAGGCAATCGTGCGAGATCATATAACCGGGCTAAGACCCGAAGACAAT
CGAGCAAGTCACCAA
Found at i:57390570 original size:29 final size:29
Alignment explanation
Indices: 57390535--57390604 Score: 97
Period size: 29 Copynumber: 2.4 Consensus size: 29
57390525 TGAGATTGGT
* *
57390535 ACTAAGTGTGCGGGCTTGAAA-TGCATGGC
1 ACTAAGTGTGCGAG-TTGAAAGTACATGGC
*
57390564 ACTAAGTGTGCGAGTTTAAAGTACATGGC
1 ACTAAGTGTGCGAGTTGAAAGTACATGGC
57390593 ACTAAGTGTGCG
1 ACTAAGTGTGCG
57390605 TGGTTGATTA
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
28 5 0.14
29 32 0.86
ACGTcount: A:0.27, C:0.16, G:0.31, T:0.26
Consensus pattern (29 bp):
ACTAAGTGTGCGAGTTGAAAGTACATGGC
Found at i:57397702 original size:11 final size:11
Alignment explanation
Indices: 57397686--57397711 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
57397676 CCTATTTAGA
57397686 TATGAAAAATG
1 TATGAAAAATG
57397697 TATGAAAAATG
1 TATGAAAAATG
57397708 TATG
1 TATG
57397712 TTTGATTGTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.50, C:0.00, G:0.19, T:0.31
Consensus pattern (11 bp):
TATGAAAAATG
Found at i:57401964 original size:31 final size:28
Alignment explanation
Indices: 57401890--57401964 Score: 80
Period size: 28 Copynumber: 2.6 Consensus size: 28
57401880 TAAAGATATT
* *
57401890 TTTGACAAAAATGTCAATTAGGGATTAA
1 TTTGAGAAAAATGTAAATTAGGGATTAA
*
57401918 TTTGAGAAAAATGTAAATTGAGGGGGTTAA
1 TTTGAGAAAAATGTAAATT-A-GGGATTAA
57401948 TTATGA-AATAAATGTAA
1 TT-TGAGAA-AAATGTAA
57401965 GGTTTGGGCT
Statistics
Matches: 40, Mismatches: 3, Indels: 5
0.83 0.06 0.10
Matches are distributed among these distances:
28 17 0.43
29 1 0.03
30 11 0.28
31 11 0.28
ACGTcount: A:0.44, C:0.03, G:0.21, T:0.32
Consensus pattern (28 bp):
TTTGAGAAAAATGTAAATTAGGGATTAA
Found at i:57405070 original size:101 final size:101
Alignment explanation
Indices: 57404870--57405110 Score: 322
Period size: 101 Copynumber: 2.4 Consensus size: 101
57404860 ATGTATATAA
* * * *
57404870 GGCATTGACATGTGAATTCTGATATGTGATGTGCGAGTAAGACCATGGCATCGATGTGCGATTCC
1 GGCATCGATATGTG-ATTCTGATATGTGATGTGCGAGTAAGACCATGGCATCGATATGCGACTCC
* * * *
57404935 TATATATGTGTGCGAGTAAGACCATGTTTAATACATT
65 GATAGATCTGTGCGAGTAAGACCACGTTTAATACATT
* *
57404972 GGCATCGATATGTGATTCTGATATGTGATGTGCGTGTAAGACCATGGCATCGATATGTGACTCCG
1 GGCATCGATATGTGATTCTGATATGTGATGTGCGAGTAAGACCATGGCATCGATATGCGACTCCG
* * *
57405037 ATAGATCTGTGTGAGTAAGTCCACGTTTTATACATT
66 ATAGATCTGTGCGAGTAAGACCACGTTTAATACATT
* * *
57405073 GGCATCGATATGTGATTCCGATATATG-TGTGCTAGTAA
1 GGCATCGATATGTGATTCTGATATGTGATGTGCGAGTAA
57405111 AACCCTATCT
Statistics
Matches: 122, Mismatches: 17, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
100 9 0.07
101 101 0.83
102 12 0.10
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.33
Consensus pattern (101 bp):
GGCATCGATATGTGATTCTGATATGTGATGTGCGAGTAAGACCATGGCATCGATATGCGACTCCG
ATAGATCTGTGCGAGTAAGACCACGTTTAATACATT
Found at i:57413185 original size:27 final size:26
Alignment explanation
Indices: 57413138--57413188 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 26
57413128 CAAGGCTGCC
*
57413138 AGATATTGTGACGAAGTCACCAGAAT
1 AGATATTGTGACGAAGCCACCAGAAT
* *
57413164 AGATATATGTGGCGAGGCCACCAGA
1 AGATAT-TGTGACGAAGCCACCAGA
57413189 TTGCAGCGAG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 6 0.29
27 15 0.71
ACGTcount: A:0.35, C:0.18, G:0.27, T:0.20
Consensus pattern (26 bp):
AGATATTGTGACGAAGCCACCAGAAT
Found at i:57419812 original size:40 final size:40
Alignment explanation
Indices: 57419745--57419947 Score: 241
Period size: 40 Copynumber: 5.1 Consensus size: 40
57419735 CGGAATTTAA
* ** *
57419745 CCGGATATAACCACAAGCA-AAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACAACTCGCACAAA-TGCCTTCGGGTCTTAGC
* *** *
57419785 CCGGATTTGGTAACTTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAGC
*
57419825 CCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAGC
*
57419865 CCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTA-C
1 CCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAGC
* * *
57419904 CCGGATATAATC-ACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAA-CAACTCGCACAAATGCCTTCGGGTCTTAGC
57419944 CCGG
1 CCGG
57419948 GTATCATTCA
Statistics
Matches: 142, Mismatches: 18, Indels: 6
0.86 0.11 0.04
Matches are distributed among these distances:
39 33 0.23
40 106 0.75
41 3 0.02
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAGC
Found at i:57423839 original size:27 final size:27
Alignment explanation
Indices: 57423809--57423935 Score: 148
Period size: 27 Copynumber: 4.7 Consensus size: 27
57423799 GGGGCAAAAT
* * *
57423809 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
57423836 GGTAATTCTACTCTAC-AGGGCTATTTT
1 GGTAATTCTACCCTACAAGGG-TATTTC
* *
57423863 GGTATTTCTACCCTAAAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
57423890 AGTAATTCTATCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
57423917 GGTAATTCTACCCTACAAG
1 GGTAATTCTACCCTACAAG
57423936 TGTAACACCC
Statistics
Matches: 81, Mismatches: 17, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
26 4 0.05
27 73 0.90
28 4 0.05
ACGTcount: A:0.26, C:0.21, G:0.18, T:0.35
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:57425391 original size:29 final size:29
Alignment explanation
Indices: 57425359--57425519 Score: 171
Period size: 29 Copynumber: 5.6 Consensus size: 29
57425349 AATTTAAGCC
* *** *
57425359 CGCACACATAGTGCCATACCCTTCGAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCT
** * *
57425388 CGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCT
* * * *
57425417 TGCACACATAGTGTCATATTTTTCCAGCAT
1 CGCACACTTAGTGCCATATATTTCCAGC-T
*
57425447 -GCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCT
*
57425475 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCT
57425504 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
57425520 ATCTCGTCAC
Statistics
Matches: 114, Mismatches: 16, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
29 113 0.99
30 1 0.01
ACGTcount: A:0.25, C:0.32, G:0.16, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCT
Found at i:57431104 original size:27 final size:28
Alignment explanation
Indices: 57431047--57431116 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
57431037 AAATTTGTAC
**
57431047 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
*
57431075 AGCACTATGTGTGCG-AGCTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
57431102 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
57431117 GACTTATTAT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 24 0.63
28 14 0.37
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAAGCTGATTATAT
Found at i:57431125 original size:27 final size:27
Alignment explanation
Indices: 57431047--57431128 Score: 103
Period size: 27 Copynumber: 3.0 Consensus size: 27
57431037 AAATTTGTAC
* *
57431047 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGGACTT-ATTATAT
* *
57431075 AGCACTATGTGTGC-GAGCTGATTATAT
1 AGCACTAAGTGTGCGGA-CTTATTATAT
57431102 AGCACTAAGTGTGCGGACTTATTATAT
1 AGCACTAAGTGTGCGGACTTATTATAT
57431129 GCTTTTGCAT
Statistics
Matches: 46, Mismatches: 6, Indels: 5
0.81 0.11 0.09
Matches are distributed among these distances:
27 30 0.65
28 16 0.35
ACGTcount: A:0.29, C:0.13, G:0.23, T:0.34
Consensus pattern (27 bp):
AGCACTAAGTGTGCGGACTTATTATAT
Found at i:57439025 original size:27 final size:28
Alignment explanation
Indices: 57438968--57439037 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
57438958 AAATTTGTAC
**
57438968 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
*
57438996 AGCACTATGTGTGCG-AGCTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
57439023 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
57439038 GACTTATTAT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 24 0.63
28 14 0.37
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAAGCTGATTATAT
Found at i:57439046 original size:27 final size:27
Alignment explanation
Indices: 57438968--57439049 Score: 103
Period size: 27 Copynumber: 3.0 Consensus size: 27
57438958 AAATTTGTAC
* *
57438968 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGGACTT-ATTATAT
* *
57438996 AGCACTATGTGTGC-GAGCTGATTATAT
1 AGCACTAAGTGTGCGGA-CTTATTATAT
57439023 AGCACTAAGTGTGCGGACTTATTATAT
1 AGCACTAAGTGTGCGGACTTATTATAT
57439050 GCTTTTGCAT
Statistics
Matches: 46, Mismatches: 6, Indels: 5
0.81 0.11 0.09
Matches are distributed among these distances:
27 30 0.65
28 16 0.35
ACGTcount: A:0.29, C:0.13, G:0.23, T:0.34
Consensus pattern (27 bp):
AGCACTAAGTGTGCGGACTTATTATAT
Found at i:57442421 original size:93 final size:93
Alignment explanation
Indices: 57442314--57442485 Score: 274
Period size: 93 Copynumber: 1.8 Consensus size: 93
57442304 GCCCATAAGT
* *
57442314 GAACTCGAACTCAACTCAATGAGCTCGTG-CGCTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCGAACTCAACTCAACGAGCTCG-GACACTCGCATCCATAAGTGAACTCGGACTCAACTCA
57442378 ACGAGCTCGGATGCCTAGTTACATCTCTC
65 ACGAGCTCGGATGCCTAGTTACATCTCTC
* * *
57442407 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGAACTCAACTCAACGAGCTCGGACACTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
57442472 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
57442486 CAAATATCCT
Statistics
Matches: 72, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
92 1 0.01
93 71 0.99
ACGTcount: A:0.28, C:0.30, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGAACTCAACTCAACGAGCTCGGACACTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:57442481 original size:46 final size:45
Alignment explanation
Indices: 57442306--57442480 Score: 183
Period size: 46 Copynumber: 3.8 Consensus size: 45
57442296 TGTAACCCGC
* * **
57442306 CCATAAGTGAACTCGAACTCAACTCAATGAGCTCGTGCGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCG-GCATTCGCAT
*
57442352 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG-ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGCATTCGC-A--T
* *** *
57442398 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGG-CATTCGCAT
*
57442445 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
57442481 ATGCCCAAAT
Statistics
Matches: 107, Mismatches: 15, Indels: 14
0.79 0.11 0.10
Matches are distributed among these distances:
43 1 0.01
44 2 0.02
45 1 0.01
46 66 0.62
47 32 0.30
49 4 0.04
50 1 0.01
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.22
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGCATTCGCAT
Found at i:57442500 original size:46 final size:44
Alignment explanation
Indices: 57442357--57442500 Score: 116
Period size: 46 Copynumber: 3.1 Consensus size: 44
57442347 CGCATCCATA
* *
57442357 AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCA---A-ATC-CT
* * *
57442406 --CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGC--ATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCCCAAATCC-T
57442449 AAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATATCCT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCC-AA-ATCCT
57442496 AGTGA
1 AGTGA
57442501 TATGTCACTT
Statistics
Matches: 77, Mismatches: 8, Indels: 23
0.71 0.07 0.21
Matches are distributed among these distances:
42 1 0.01
43 4 0.05
44 4 0.05
46 33 0.43
47 28 0.36
48 4 0.05
49 3 0.04
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.22
Consensus pattern (44 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATCCT
Found at i:57450403 original size:45 final size:46
Alignment explanation
Indices: 57450303--57450433 Score: 157
Period size: 45 Copynumber: 3.0 Consensus size: 46
57450293 AGACTTTTGT
* * *
57450303 TCAT-TCACTGGCATT-TCGCCTGCTAGGCTC-AAGGCTCG-AT-A
1 TCATCTCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAA
* *
57450344 TCATGTCACCGGCATTATAGCCTACTAGGCTCAAAGGCCCGAATAA
1 TCATCTCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAA
* *
57450390 T-ATCTCACCGGCATAATAGCCTGCTAGGCTCAAAGGCCTGAATA
1 TCATCTCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATA
57450434 TAATACCAGT
Statistics
Matches: 77, Mismatches: 8, Indels: 6
0.85 0.09 0.07
Matches are distributed among these distances:
41 4 0.05
42 10 0.13
43 13 0.17
44 7 0.09
45 41 0.53
46 2 0.03
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (46 bp):
TCATCTCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAA
Found at i:57450474 original size:38 final size:38
Alignment explanation
Indices: 57450431--57450702 Score: 348
Period size: 38 Copynumber: 7.1 Consensus size: 38
57450421 AAAGGCCTGA
* * * *
57450431 ATATAATACCAGTACTAGGCCTGCGGGATTTAACCCGG
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGG
*
57450469 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGG
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGG
*
57450507 ATATATTACCAGCACGAAGCCTGCGGGATTTAACTCGG
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGG
* * *
57450545 ATATAATACCAGCACAAAGCCTGCGGGTCTTTAAGCCCGG
1 ATATATTACCAGCACGAAGCCTGCGGG-ATTTAA-CCCGG
* *
57450585 ATATATTACCAGCACGAAG-CTGGGGGATTTAACCTGG
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGG
* * **
57450622 ATATATTACTAGCACGAAGCCTGCGGCATTTAACCTAG
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGG
* *
57450660 ATATATTACCAGTACGAAGCCTGCGGGTCTTTAAGCCCGG
1 ATATATTACCAGCACGAAGCCTGCGGG-ATTTAA-CCCGG
57450700 ATA
1 ATA
57450703 CACATCAAAT
Statistics
Matches: 205, Mismatches: 24, Indels: 8
0.86 0.10 0.03
Matches are distributed among these distances:
37 22 0.11
38 140 0.68
39 16 0.08
40 27 0.13
ACGTcount: A:0.30, C:0.24, G:0.23, T:0.23
Consensus pattern (38 bp):
ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGG
Found at i:57450636 original size:115 final size:116
Alignment explanation
Indices: 57450431--57450702 Score: 399
Period size: 115 Copynumber: 2.4 Consensus size: 116
57450421 AAAGGCCTGA
* * *
57450431 ATATAATACCAGTACTAGGCCTGCGGG-ATTTAA-CCCGGATATAATACCAGCACGAAGCCTGCG
1 ATATAATACCAGTACAAAGCCTGCGGGTCTTTAAGCCCGGATATAATACCAGCACGAAGCCTGCG
* *
57450494 GGATTTAACCCGGATATATTACCAGCACGAAGCCTGCGGGATTTAA-CTCGG
66 GGATTTAACCCGGATATATTACCAGCACGAAGCCTGCGGCATTTAACCT-AG
* * *
57450545 ATATAATACCAGCACAAAGCCTGCGGGTCTTTAAGCCCGGATATATTACCAGCACGAAG-CTGGG
1 ATATAATACCAGTACAAAGCCTGCGGGTCTTTAAGCCCGGATATAATACCAGCACGAAGCCTGCG
* *
57450609 GGATTTAACCTGGATATATTACTAGCACGAAGCCTGCGGCATTTAACCTAG
66 GGATTTAACCCGGATATATTACCAGCACGAAGCCTGCGGCATTTAACCTAG
* *
57450660 ATATATTACCAGTACGAAGCCTGCGGGTCTTTAAGCCCGGATA
1 ATATAATACCAGTACAAAGCCTGCGGGTCTTTAAGCCCGGATA
57450703 CACATCAAAT
Statistics
Matches: 142, Mismatches: 13, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
114 24 0.17
115 93 0.65
116 25 0.18
ACGTcount: A:0.30, C:0.24, G:0.23, T:0.23
Consensus pattern (116 bp):
ATATAATACCAGTACAAAGCCTGCGGGTCTTTAAGCCCGGATATAATACCAGCACGAAGCCTGCG
GGATTTAACCCGGATATATTACCAGCACGAAGCCTGCGGCATTTAACCTAG
Found at i:57457897 original size:51 final size:51
Alignment explanation
Indices: 57457829--57457929 Score: 202
Period size: 51 Copynumber: 2.0 Consensus size: 51
57457819 TTACCTAAGA
57457829 TTCGAACCCATGCCCTCTCAGATGCTTCACACGCCACTTGCCACTAAGCCT
1 TTCGAACCCATGCCCTCTCAGATGCTTCACACGCCACTTGCCACTAAGCCT
57457880 TTCGAACCCATGCCCTCTCAGATGCTTCACACGCCACTTGCCACTAAGCC
1 TTCGAACCCATGCCCTCTCAGATGCTTCACACGCCACTTGCCACTAAGCC
57457930 ACAAGGCTTT
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
51 50 1.00
ACGTcount: A:0.22, C:0.42, G:0.14, T:0.23
Consensus pattern (51 bp):
TTCGAACCCATGCCCTCTCAGATGCTTCACACGCCACTTGCCACTAAGCCT
Found at i:57468149 original size:47 final size:47
Alignment explanation
Indices: 57468098--57468337 Score: 401
Period size: 47 Copynumber: 5.1 Consensus size: 47
57468088 TTAGGATTTT
57468098 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
57468145 ATGTGATGAATGTGAGCATGCATATGTGTGATAA-GCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
57468191 ATATGATGAATATGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
57468238 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
57468285 ATATGATGAATATGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
57468332 ATGTGA
1 ATGTGA
57468338 AATATGTATG
Statistics
Matches: 177, Mismatches: 15, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
46 42 0.24
47 135 0.76
ACGTcount: A:0.34, C:0.12, G:0.28, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:57468201 original size:93 final size:94
Alignment explanation
Indices: 57468101--57468337 Score: 458
Period size: 93 Copynumber: 2.5 Consensus size: 94
57468091 GGATTTTATG
*
57468101 TGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCATGC
1 TGATGAATATGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCATGC
57468166 ATATGTGTGATAA-GCCGAATGGCCAATA
66 ATATGTGTGATAAGGCCGAATGGCCAATA
57468194 TGATGAATATGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCATGC
1 TGATGAATATGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCATGC
57468259 ATATGTGTGATAAGGCCGAATGGCCAATA
66 ATATGTGTGATAAGGCCGAATGGCCAATA
57468288 TGATGAATATGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGA
1 TGATGAATATGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGA
57468338 AATATGTATG
Statistics
Matches: 142, Mismatches: 1, Indels: 1
0.99 0.01 0.01
Matches are distributed among these distances:
93 77 0.54
94 65 0.46
ACGTcount: A:0.34, C:0.13, G:0.27, T:0.26
Consensus pattern (94 bp):
TGATGAATATGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCATGC
ATATGTGTGATAAGGCCGAATGGCCAATA
Done.