Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr03 135709677
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 135709677
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 187 of 438
Found at i:57838725 original size:46 final size:45
Alignment explanation
Indices: 57838675--57838846 Score: 215
Period size: 46 Copynumber: 3.8 Consensus size: 45
57838665 TGGTTGAGCA
57838675 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* * * *
57838721 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGAATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACT-TATG-GA-T-GCGAAG
57838767 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *
57838813 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
57838847 GGGGCGGGTT
Statistics
Matches: 108, Mismatches: 10, Indels: 16
0.81 0.07 0.12
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 2 0.02
46 96 0.89
47 2 0.02
48 3 0.03
49 1 0.01
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:57838829 original size:92 final size:92
Alignment explanation
Indices: 57838672--57838841 Score: 313
Period size: 92 Copynumber: 1.8 Consensus size: 92
57838662 GGATGGTTGA
* *
57838672 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
57838737 TGAGTCCGAGTTCGTGAATGTAACTAG
66 TGAGTCCGAGTTCGTGAATGTAACTAG
*
57838764 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
57838829 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
57838842 ACTTAGGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
92 75 1.00
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (92 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAATGTAACTAG
Found at i:57846263 original size:46 final size:46
Alignment explanation
Indices: 57846213--57846385 Score: 210
Period size: 46 Copynumber: 3.7 Consensus size: 46
57846203 TGGTTGAGCA
57846213 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
57846259 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
57846304 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
57846352 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
57846386 GGGGCGGGTT
Statistics
Matches: 107, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 61 0.57
47 29 0.27
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:57846369 original size:93 final size:93
Alignment explanation
Indices: 57846210--57846380 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
57846200 GGATGGTTGA
* *
57846210 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
57846275 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
*
57846303 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
57846368 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
57846381 ACTTAGGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:57850625 original size:40 final size:40
Alignment explanation
Indices: 57850568--57850861 Score: 404
Period size: 40 Copynumber: 7.5 Consensus size: 40
57850558 CGGATGATAA
* * *
57850568 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
*
57850608 CTGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
57850648 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
57850688 CCGGGTTAAGT-CCGAAGGCATTTGTGCGAGTTATTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
57850727 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
57850766 -CGGGCTAAGT-CCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
57850804 CCGGGCTATGTCCCGAAGGCATTCGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
57850844 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
57850862 TACTTGGCTT
Statistics
Matches: 232, Mismatches: 16, Indels: 13
0.89 0.06 0.05
Matches are distributed among these distances:
37 25 0.11
38 11 0.05
39 63 0.27
40 133 0.57
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:57850810 original size:77 final size:77
Alignment explanation
Indices: 57850568--57850835 Score: 401
Period size: 79 Copynumber: 3.4 Consensus size: 77
57850558 CGGATGATAA
* * *
57850568 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGTTCTGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TTC-GGGCTAAGT-CCGAAGGCATTTG
57850633 TGCGAGTTACTATAT
63 TGCGAGTTACTATAT
* *
57850648 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGTTAAGTCCGAAGGCATTTGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT-T-CGGGCTAAGTCCGAAGGCATTTGT
*
57850713 GCGAGTTATTATAT
64 GCGAGTTACTATAT
*
57850727 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTCGGGCTAAGTCCGAAGGCATTGGTGC
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTCGGGCTAAGTCCGAAGGCATTTGTGC
57850792 GAGTTACTATAT
66 GAGTTACTATAT
* * *
57850804 CCGGGCTATGTCCCGAAGGCATTCGAGCGAGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
57850836 AGCTATATCC
Statistics
Matches: 173, Mismatches: 13, Indels: 7
0.90 0.07 0.04
Matches are distributed among these distances:
77 64 0.37
78 1 0.01
79 65 0.38
80 42 0.24
81 1 0.01
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (77 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTCGGGCTAAGTCCGAAGGCATTTGTGC
GAGTTACTATAT
Found at i:57850859 original size:156 final size:159
Alignment explanation
Indices: 57850568--57850861 Score: 454
Period size: 156 Copynumber: 1.9 Consensus size: 159
57850558 CGGATGATAA
* *
57850568 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGTTCTGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGCGCGAGTGACTAGTTCTGGGCTAAGTCCCGAAGGCATTGG
* * * *
57850633 TGCGAGTTACTATATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGTTAAG
66 TGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTCGAGCGAGTTACTATATCCGGGTTAAA
57850698 TCCGAAGGCATTTGTGCGAGTTATTATAT
131 TCCGAAGGCATTTGTGCGAGTTATTATAT
* *
57850727 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TTC-GGGCTAAGT-CCGAAGGCATTGG
1 CCGGGCTAAGTCCCGAAGGCATTTGCGCGAGTGACTAGTTCTGGGCTAAGTCCCGAAGGCATTGG
*
57850789 TGCGAGTTACTATATCCGGGCTATGTCCCGAAGGCATTCGAGCGAG-TAGCTATATCC-GGTTAA
66 TGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTCGAGCGAGTTA-CTATATCCGGGTTAA
57850852 ATCCCGAAGG
130 AT-CCGAAGG
57850862 TACTTGGCTT
Statistics
Matches: 124, Mismatches: 9, Indels: 7
0.89 0.06 0.05
Matches are distributed among these distances:
155 9 0.07
156 69 0.56
157 9 0.07
158 3 0.02
159 34 0.27
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.27
Consensus pattern (159 bp):
CCGGGCTAAGTCCCGAAGGCATTTGCGCGAGTGACTAGTTCTGGGCTAAGTCCCGAAGGCATTGG
TGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTCGAGCGAGTTACTATATCCGGGTTAAA
TCCGAAGGCATTTGTGCGAGTTATTATAT
Found at i:57857876 original size:40 final size:40
Alignment explanation
Indices: 57857821--57858118 Score: 431
Period size: 40 Copynumber: 7.5 Consensus size: 40
57857811 CGGATGATAA
* * *
57857821 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
57857861 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
57857901 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
57857941 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
57857981 CCGAGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
57858021 CCAGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
57858061 CCGGGCTATGTCCCGAAGGCATTCGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
57858101 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
57858119 TACTTGGCTT
Statistics
Matches: 238, Mismatches: 18, Indels: 5
0.91 0.07 0.02
Matches are distributed among these distances:
39 16 0.07
40 222 0.93
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:57861308 original size:25 final size:25
Alignment explanation
Indices: 57861237--57861315 Score: 79
Period size: 25 Copynumber: 3.1 Consensus size: 25
57861227 GTTGCACTGG
57861237 ATAGGTTTATTAAAGCATTTTATAT
1 ATAGGTTTATTAAAGCATTTTATAT
* * * **
57861262 ATTTGCTCTTA-AAACAAAATTTTATAT
1 A-TAGGT-TTATTAA-AGCATTTTATAT
57861289 ATAGGTTTATTAAAGCATTTTATAT
1 ATAGGTTTATTAAAGCATTTTATAT
57861314 AT
1 AT
57861316 TTTCTCAACA
Statistics
Matches: 40, Mismatches: 10, Indels: 8
0.69 0.17 0.14
Matches are distributed among these distances:
25 16 0.40
26 10 0.25
27 14 0.35
ACGTcount: A:0.38, C:0.06, G:0.09, T:0.47
Consensus pattern (25 bp):
ATAGGTTTATTAAAGCATTTTATAT
Found at i:57861314 original size:27 final size:27
Alignment explanation
Indices: 57861237--57861315 Score: 69
Period size: 26 Copynumber: 3.0 Consensus size: 27
57861227 GTTGCACTGG
57861237 ATAGGTTTATTAAAGCATTTTATATAT
1 ATAGGTTTATTAAAGCATTTTATATAT
* * *
57861264 -TTGCTCTTA--AAA-CAAAATTT-TATAT
1 ATAGGT-TTATTAAAGC--ATTTTATATAT
57861289 ATAGGTTTATTAAAGCATTTTATATAT
1 ATAGGTTTATTAAAGCATTTTATATAT
57861316 TTTCTCAACA
Statistics
Matches: 38, Mismatches: 6, Indels: 16
0.63 0.10 0.27
Matches are distributed among these distances:
24 1 0.03
25 11 0.29
26 14 0.37
27 11 0.29
28 1 0.03
ACGTcount: A:0.38, C:0.06, G:0.09, T:0.47
Consensus pattern (27 bp):
ATAGGTTTATTAAAGCATTTTATATAT
Found at i:57868489 original size:20 final size:22
Alignment explanation
Indices: 57868466--57868506 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
57868456 ATAAAAATAT
57868466 GTTG-TTT-CCATTATTTTGCC
1 GTTGTTTTGCCATTATTTTGCC
*
57868486 GTTGTTTTGCCATTCTTTTGC
1 GTTGTTTTGCCATTATTTTGC
57868507 TGTCATTTCG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 4 0.22
21 3 0.17
22 11 0.61
ACGTcount: A:0.07, C:0.20, G:0.17, T:0.56
Consensus pattern (22 bp):
GTTGTTTTGCCATTATTTTGCC
Found at i:57868681 original size:21 final size:20
Alignment explanation
Indices: 57868657--57868708 Score: 52
Period size: 21 Copynumber: 2.5 Consensus size: 20
57868647 AATATTAAAT
57868657 ATTTTTTA-AAATTTATTTTTA
1 ATTTTTTAGAAA--TATTTTTA
*
57868678 ATTTATTGAGAAATATTTTTA
1 ATTT-TTTAGAAATATTTTTA
57868699 ATGTTTTTAG
1 AT-TTTTTAG
57868709 TGTATTTGAC
Statistics
Matches: 26, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
21 18 0.69
22 5 0.19
23 3 0.12
ACGTcount: A:0.33, C:0.00, G:0.08, T:0.60
Consensus pattern (20 bp):
ATTTTTTAGAAATATTTTTA
Found at i:57871817 original size:6 final size:6
Alignment explanation
Indices: 57871799--57871842 Score: 61
Period size: 6 Copynumber: 7.2 Consensus size: 6
57871789 TTTACAACCC
* *
57871799 AAGGGG AAAGGG AAGGGG AAGGGG AAGGGG AAGAGGA AAGGGG A
1 AAGGGG AAGGGG AAGGGG AAGGGG AAGGGG AAG-GGG AAGGGG A
57871843 GAAGAAGGTG
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
6 28 0.85
7 5 0.15
ACGTcount: A:0.41, C:0.00, G:0.59, T:0.00
Consensus pattern (6 bp):
AAGGGG
Found at i:57877634 original size:30 final size:30
Alignment explanation
Indices: 57877590--57877678 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
57877580 CAAAGATAAC
57877590 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
57877619 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
57877649 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
57877679 CGATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:57877638 original size:15 final size:15
Alignment explanation
Indices: 57877590--57877669 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
57877580 CAAAGATAAC
*
57877590 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
57877604 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
57877619 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
57877634 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
57877649 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
57877664 AAGAAA
1 AAGAAA
57877670 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:57877678 original size:15 final size:15
Alignment explanation
Indices: 57877601--57877678 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
57877591 AGAAAACCGA
57877601 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
57877616 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
57877630 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
57877645 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
57877661 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
57877676 ATA
1 ATA
57877679 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:57880737 original size:93 final size:93
Alignment explanation
Indices: 57880625--57880795 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
57880615 GCCCATAAGT
* *
57880625 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
57880690 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
57880718 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
57880783 CGAGTTCGGATGC
66 CGAGTTCGGATGC
57880796 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:57880792 original size:46 final size:46
Alignment explanation
Indices: 57880617--57880792 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
57880607 TGTAACCCGC
* * *
57880617 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
57880663 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* *
57880713 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
57880756 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
57880793 TGCTCAACCA
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 64 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:57882750 original size:30 final size:30
Alignment explanation
Indices: 57882706--57882794 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
57882696 CAAAGATAAC
57882706 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
57882735 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
57882765 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
57882795 CGATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:57882754 original size:15 final size:15
Alignment explanation
Indices: 57882706--57882785 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
57882696 CAAAGATAAC
*
57882706 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
57882720 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
57882735 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
57882750 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
57882765 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
57882780 AAGAAA
1 AAGAAA
57882786 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:57882794 original size:15 final size:15
Alignment explanation
Indices: 57882717--57882794 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
57882707 AGAAAACCGA
57882717 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
57882732 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
57882746 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
57882761 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
57882777 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
57882792 ATA
1 ATA
57882795 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:57885852 original size:93 final size:93
Alignment explanation
Indices: 57885740--57885910 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
57885730 GCCCATAAGT
* *
57885740 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
57885805 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
57885833 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
57885898 CGAGTTCGGATGC
66 CGAGTTCGGATGC
57885911 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:57885907 original size:46 final size:46
Alignment explanation
Indices: 57885732--57885907 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
57885722 TGTAACCCGC
* * *
57885732 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
57885778 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* *
57885828 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
57885871 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
57885908 TGCTCAACCA
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 64 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:57887371 original size:19 final size:19
Alignment explanation
Indices: 57887338--57887377 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
57887328 AAATTATCAT
*
57887338 ATTAATTTTAATTTATTTG
1 ATTAATTTTAATTTACTTG
57887357 ATTAA-TTTAATTTTACTTG
1 ATTAATTTTAA-TTTACTTG
57887376 AT
1 AT
57887378 CAAAATTAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 5 0.26
19 14 0.74
ACGTcount: A:0.33, C:0.03, G:0.05, T:0.60
Consensus pattern (19 bp):
ATTAATTTTAATTTACTTG
Found at i:57898963 original size:29 final size:29
Alignment explanation
Indices: 57898930--57899060 Score: 122
Period size: 29 Copynumber: 4.5 Consensus size: 29
57898920 GTGACGAGAT
57898930 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
57898959 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
* ** * ***
57898988 CGGCACTGGGTGTGCGA-GCTCGAAGGGTA
1 TGGCACTAAGTGTGC-ATGCTGGAAATATA
* ** * *
57899017 TGGCACTATGTGTGCGGGCT-TAAATCACA
1 TGGCACTAAGTGTGCATGCTGGAAAT-ATA
57899046 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
57899061 GAAATCGAGT
Statistics
Matches: 82, Mismatches: 17, Indels: 6
0.78 0.16 0.06
Matches are distributed among these distances:
28 2 0.02
29 79 0.96
30 1 0.01
ACGTcount: A:0.25, C:0.18, G:0.32, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:57899100 original size:2 final size:2
Alignment explanation
Indices: 57899095--57899131 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
57899085 GTGCGTACTC
57899095 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
57899132 CTCCGATCGA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:57902039 original size:12 final size:10
Alignment explanation
Indices: 57902022--57902082 Score: 54
Period size: 10 Copynumber: 5.9 Consensus size: 10
57902012 TCCTCCTATC
57902022 TTTTTATTCTT
1 TTTTTATT-TT
57902033 ATTTTTATTTT
1 -TTTTTATTTT
57902044 TTTATT-TTTT
1 TTT-TTATTTT
57902054 TTTTTATTTT
1 TTTTTATTTT
*
57902064 ATTTTT-TTTA
1 -TTTTTATTTT
*
57902074 TTTTCATTT
1 TTTTTATTT
57902083 CAATTTTATT
Statistics
Matches: 43, Mismatches: 2, Indels: 10
0.78 0.04 0.18
Matches are distributed among these distances:
9 6 0.14
10 20 0.47
11 9 0.21
12 8 0.19
ACGTcount: A:0.13, C:0.03, G:0.00, T:0.84
Consensus pattern (10 bp):
TTTTTATTTT
Found at i:57902047 original size:20 final size:20
Alignment explanation
Indices: 57902022--57902082 Score: 79
Period size: 20 Copynumber: 3.0 Consensus size: 20
57902012 TCCTCCTATC
*
57902022 TTTTTATTCTTATTTTTATT
1 TTTTTATTTTTATTTTTATT
*
57902042 TTTTTATTTTTTTTTTTATT
1 TTTTTATTTTTATTTTTATT
*
57902062 TTATTT-TTTTTATTTTCATT
1 TT-TTTATTTTTATTTTTATT
57902082 T
1 T
57902083 CAATTTTATT
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
20 33 0.92
21 3 0.08
ACGTcount: A:0.13, C:0.03, G:0.00, T:0.84
Consensus pattern (20 bp):
TTTTTATTTTTATTTTTATT
Found at i:57902050 original size:14 final size:13
Alignment explanation
Indices: 57902035--57902103 Score: 72
Period size: 12 Copynumber: 5.4 Consensus size: 13
57902025 TTATTCTTAT
57902035 TTTTATTTTTTTA
1 TTTTATTTTTTTA
57902048 TTTT-TTTTTTTA
1 TTTTATTTTTTTA
57902060 TTTTATTTTTTTTA
1 TTTTA-TTTTTTTA
**
57902074 TTTTCA--TTTCAA
1 TTTT-ATTTTTTTA
*
57902086 TTTTATTATTTTA
1 TTTTATTTTTTTA
57902099 TTTTA
1 TTTTA
57902104 AAGACATACT
Statistics
Matches: 46, Mismatches: 5, Indels: 10
0.75 0.08 0.16
Matches are distributed among these distances:
11 1 0.02
12 20 0.43
13 12 0.26
14 12 0.26
15 1 0.02
ACGTcount: A:0.17, C:0.03, G:0.00, T:0.80
Consensus pattern (13 bp):
TTTTATTTTTTTA
Found at i:57902060 original size:26 final size:26
Alignment explanation
Indices: 57902022--57902102 Score: 78
Period size: 26 Copynumber: 3.2 Consensus size: 26
57902012 TCCTCCTATC
57902022 TTTTTATTCTTATTTT-TATTTTTTTA
1 TTTTTATTCTTATTTTAT-TTTTTTTA
* *
57902048 TTTTTTTTTTTATTTTATTTTTTTTA
1 TTTTTATTCTTATTTTATTTTTTTTA
* * *
57902074 TTTTCATT-TCAATTTTA-TTATTTTA
1 TTTTTATTCT-TATTTTATTTTTTTTA
57902099 TTTT
1 TTTT
57902103 AAAGACATAC
Statistics
Matches: 47, Mismatches: 6, Indels: 5
0.81 0.10 0.09
Matches are distributed among these distances:
25 12 0.26
26 34 0.72
27 1 0.02
ACGTcount: A:0.16, C:0.04, G:0.00, T:0.80
Consensus pattern (26 bp):
TTTTTATTCTTATTTTATTTTTTTTA
Found at i:57902077 original size:6 final size:6
Alignment explanation
Indices: 57902022--57902069 Score: 53
Period size: 6 Copynumber: 7.8 Consensus size: 6
57902012 TCCTCCTATC
* *
57902022 TTTTTA TTCTTA TTTTTA TTTTTTTA TTTTTT TTTTTA -TTTTA TTTTT
1 TTTTTA TTTTTA TTTTTA --TTTTTA TTTTTA TTTTTA TTTTTA TTTTT
57902070 TTTATTTTCA
Statistics
Matches: 35, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
5 5 0.14
6 24 0.69
8 6 0.17
ACGTcount: A:0.12, C:0.02, G:0.00, T:0.85
Consensus pattern (6 bp):
TTTTTA
Found at i:57902089 original size:20 final size:19
Alignment explanation
Indices: 57902034--57902101 Score: 72
Period size: 20 Copynumber: 3.7 Consensus size: 19
57902024 TTTATTCTTA
57902034 TTTTTATTTT-TTT--ATT
1 TTTTTATTTTATTTCAATT
* *
57902050 TTTTT-TTTTATTTTATTT
1 TTTTTATTTTATTTCAATT
57902068 TTTTTATTTTCATTTCAATT
1 TTTTTATTTT-ATTTCAATT
*
57902088 TTATTATTTTATTT
1 TTTTTATTTTATTT
57902102 TAAAGACATA
Statistics
Matches: 43, Mismatches: 4, Indels: 7
0.80 0.07 0.13
Matches are distributed among these distances:
15 4 0.09
16 8 0.19
18 7 0.16
19 8 0.19
20 16 0.37
ACGTcount: A:0.16, C:0.03, G:0.00, T:0.81
Consensus pattern (19 bp):
TTTTTATTTTATTTCAATT
Found at i:57905014 original size:13 final size:13
Alignment explanation
Indices: 57904998--57905022 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
57904988 TTAAATTAGT
57904998 TAATTAGTTTAAA
1 TAATTAGTTTAAA
57905011 TAATTAGTTTAA
1 TAATTAGTTTAA
57905023 TAGACAAACC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.00, G:0.08, T:0.48
Consensus pattern (13 bp):
TAATTAGTTTAAA
Found at i:57907232 original size:27 final size:28
Alignment explanation
Indices: 57907202--57907271 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
57907192 ATAATAAGTC
*
57907202 CGCACACTTAGTGCTATATAATC-AGCT
1 CGCACACTTAGTGCTATATAATCAAACT
* *
57907229 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATATAATCAAACT
57907257 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
57907272 GTACAAATTT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 22 0.58
28 16 0.42
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:57915309 original size:27 final size:28
Alignment explanation
Indices: 57915279--57915348 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
57915269 ATAATAAGTC
*
57915279 CGCACACTTAGTGCTATATAATC-AGCT
1 CGCACACTTAGTGCTATATAATCAAACT
* *
57915306 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATATAATCAAACT
57915334 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
57915349 GTACAAATTT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 22 0.58
28 16 0.42
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:57919465 original size:27 final size:28
Alignment explanation
Indices: 57919435--57919534 Score: 100
Period size: 27 Copynumber: 3.7 Consensus size: 28
57919425 TTTAGTTTAC
57919435 TAAAATTACCGAAATACCCTTAG-TTTG
1 TAAAATTACCGAAATACCCTTAGATTTG
* ** *
57919462 TAAAAATACTAAAATACCC-TCGATTTG
1 TAAAATTACCGAAATACCCTTAGATTTG
* * *
57919489 TAAATTTACCGAAATA-CCTTCGACTTG
1 TAAAATTACCGAAATACCCTTAGATTTG
57919516 TAAAATTACC-AAAGTACCC
1 TAAAATTACCGAAA-TACCC
57919535 CCGATTTACA
Statistics
Matches: 59, Mismatches: 10, Indels: 7
0.78 0.13 0.09
Matches are distributed among these distances:
26 7 0.12
27 50 0.85
28 2 0.03
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.30
Consensus pattern (28 bp):
TAAAATTACCGAAATACCCTTAGATTTG
Found at i:57919502 original size:54 final size:54
Alignment explanation
Indices: 57919435--57919541 Score: 135
Period size: 54 Copynumber: 2.0 Consensus size: 54
57919425 TTTAGTTTAC
* * *
57919435 TAAAATTACCGAAATACCCTTAG-TTTGTAAAAATACTAAAATACCCTCGATTTG
1 TAAAATTACCGAAATA-CCTTAGACTTGTAAAAATACCAAAATACCCCCGATTTG
* * * *
57919489 TAAATTTACCGAAATACCTTCGACTTGTAAAATTACCAAAGTACCCCCGATTT
1 TAAAATTACCGAAATACCTTAGACTTGTAAAAATACCAAAATACCCCCGATTT
57919542 ACAGAATTAC
Statistics
Matches: 45, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
53 5 0.11
54 40 0.89
ACGTcount: A:0.38, C:0.21, G:0.09, T:0.31
Consensus pattern (54 bp):
TAAAATTACCGAAATACCTTAGACTTGTAAAAATACCAAAATACCCCCGATTTG
Found at i:57919552 original size:54 final size:53
Alignment explanation
Indices: 57919437--57919553 Score: 128
Period size: 54 Copynumber: 2.2 Consensus size: 53
57919427 TAGTTTACTA
* * * **
57919437 AAATTACCGAAATACCCTTAGTTTGTAAAAATACTAAAATACCCTCGATTTGT
1 AAATTACCGAAATACCCTTAGCTTGTAAAAATACCAAAATACCCCCGATTTAC
* * *
57919490 AAATTTACCGAAATA-CCTTCGACTTGTAAAATTACCAAAGTACCCCCGATTTAC
1 AAA-TTACCGAAATACCCTTAG-CTTGTAAAAATACCAAAATACCCCCGATTTAC
57919544 AGAATTACCG
1 A-AATTACCG
57919554 TTTTACTCCT
Statistics
Matches: 53, Mismatches: 8, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
53 8 0.15
54 43 0.81
55 2 0.04
ACGTcount: A:0.38, C:0.22, G:0.10, T:0.29
Consensus pattern (53 bp):
AAATTACCGAAATACCCTTAGCTTGTAAAAATACCAAAATACCCCCGATTTAC
Found at i:57919795 original size:27 final size:27
Alignment explanation
Indices: 57919530--57919794 Score: 311
Period size: 27 Copynumber: 9.8 Consensus size: 27
57919520 ATTACCAAAG
*
57919530 TACCCCCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
57919557 TACTCCT-AATTTACATAATTACCGTTT
1 TAC-CCTCGATTTACAGAATTACCGTTT
* * *
57919584 TACCC-CTGATTTACATAATTATCATTT
1 TACCCTC-GATTTACAGAATTACCGTTT
*
57919611 TACCCTCGACTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* * *
57919638 TACCCACAATTTACATAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
57919665 TACCC-CTGATTTACATAATTATCGTTT
1 TACCCTC-GATTTACAGAATTACCGTTT
*
57919692 TACCCTCGACTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
57919719 TACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* * *
57919746 TACCCTTGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
*
57919773 TACCCTCGATTTACAAAATTAC
1 TACCCTCGATTTACAGAATTAC
57919795 TAAAATACCC
Statistics
Matches: 206, Mismatches: 26, Indels: 12
0.84 0.11 0.05
Matches are distributed among these distances:
26 3 0.01
27 199 0.97
28 4 0.02
ACGTcount: A:0.28, C:0.24, G:0.08, T:0.40
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACCGTTT
Found at i:57919803 original size:27 final size:27
Alignment explanation
Indices: 57919773--57919953 Score: 168
Period size: 27 Copynumber: 6.7 Consensus size: 27
57919763 ATTACTGTTT
* * *
57919773 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTTGATTTATAAAATTACCAAAA
* *
57919800 TACCCTTGGTTTGTAAAATTACCAAAA
1 TACCCTTGATTTATAAAATTACCAAAA
* *
57919827 TACCTCTAG-TTTGTAAAATTACCAAAA
1 TACC-CTTGATTTATAAAATTACCAAAA
* * * *
57919854 TACCCTTGGTTTGTGAAATTACCGAAA
1 TACCCTTGATTTATAAAATTACCAAAA
* *
57919881 TACCCTTAATTTGTAAAATTACCAAAA
1 TACCCTTGATTTATAAAATTACCAAAA
* * *
57919908 TACCCCTGATTTACAAAGTTA-CAGAAA
1 TACCCTTGATTTATAAAATTACCA-AAA
*
57919935 TACCCTTGACTTTTTAAAA
1 TACCCTTGA-TTTATAAAA
57919954 ATTATAGAAG
Statistics
Matches: 128, Mismatches: 22, Indels: 7
0.82 0.14 0.04
Matches are distributed among these distances:
26 5 0.04
27 114 0.89
28 9 0.07
ACGTcount: A:0.39, C:0.20, G:0.09, T:0.33
Consensus pattern (27 bp):
TACCCTTGATTTATAAAATTACCAAAA
Found at i:57919804 original size:54 final size:54
Alignment explanation
Indices: 57919654--57919822 Score: 146
Period size: 54 Copynumber: 3.1 Consensus size: 54
57919644 CAATTTACAT
* ** * * *
57919654 AATTACCGTTTTACCC-CTGATTTACATAATTATCGT--TTTACCCTCGACTTACAG
1 AATTACCGTTTTACCCTC-GATTTACAAAATTA-C-TAAAATACCCTTGATTTATAG
* * ****
57919708 AATTACCGTTTTACCCTCGATTTATAGAATTACTGTTTTACCCTTGATTTATAG
1 AATTACCGTTTTACCCTCGATTTACAAAATTACTAAAATACCCTTGATTTATAG
* * * *
57919762 AATTACTGTTTTACCCTCGATTTACAAAATTACTAAAATACCCTTGGTTTGTAA
1 AATTACCGTTTTACCCTCGATTTACAAAATTACTAAAATACCCTTGATTTATAG
57919816 AATTACC
1 AATTACC
57919823 AAAATACCTC
Statistics
Matches: 96, Mismatches: 16, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
52 1 0.01
53 1 0.01
54 93 0.97
55 1 0.01
ACGTcount: A:0.29, C:0.21, G:0.09, T:0.40
Consensus pattern (54 bp):
AATTACCGTTTTACCCTCGATTTACAAAATTACTAAAATACCCTTGATTTATAG
Found at i:57919805 original size:81 final size:81
Alignment explanation
Indices: 57919530--57919794 Score: 372
Period size: 81 Copynumber: 3.3 Consensus size: 81
57919520 ATTACCAAAG
* * *
57919530 TACCCCCGATTTACAGAATTACCGTTTTACTCCT-AATTTACATAATTACCGTTTTACCCCTGAT
1 TACCCTCGACTTACAGAATTACCGTTTTAC-CCTCAATTTACAGAATTACCGTTTTACCCCTGAT
*
57919594 TTACATAATTATCATTT
65 TTACATAATTATCGTTT
* *
57919611 TACCCTCGACTTACAGAATTACCGTTTTACCCACAATTTACATAATTACCGTTTTACCCCTGATT
1 TACCCTCGACTTACAGAATTACCGTTTTACCCTCAATTTACAGAATTACCGTTTTACCCCTGATT
57919676 TACATAATTATCGTTT
66 TACATAATTATCGTTT
* * * *
57919692 TACCCTCGACTTACAGAATTACCGTTTTACCCTCGATTTATAGAATTACTGTTTTACCCTTGATT
1 TACCCTCGACTTACAGAATTACCGTTTTACCCTCAATTTACAGAATTACCGTTTTACCCCTGATT
* *
57919757 TATAGAATTA-CTGTTT
66 TACATAATTATC-GTTT
* *
57919773 TACCCTCGATTTACAAAATTAC
1 TACCCTCGACTTACAGAATTAC
57919795 TAAAATACCC
Statistics
Matches: 168, Mismatches: 14, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
80 3 0.02
81 165 0.98
ACGTcount: A:0.28, C:0.24, G:0.08, T:0.40
Consensus pattern (81 bp):
TACCCTCGACTTACAGAATTACCGTTTTACCCTCAATTTACAGAATTACCGTTTTACCCCTGATT
TACATAATTATCGTTT
Found at i:57919820 original size:81 final size:81
Alignment explanation
Indices: 57919573--57919822 Score: 250
Period size: 81 Copynumber: 3.1 Consensus size: 81
57919563 TAATTTACAT
* * * ****
57919573 AATTACCGTTTTACCCCTGATTTACATAATTATCATTTTACCCTCGACTTACAGAATTACCGTTT
1 AATTACCGTTTTACCCCTGATTTACAGAATTATCGTTTTACCCTCGACTTACAAAATTACCAAAA
* * * *
57919638 TACCCACAATTTACAT
66 TACCCTCGATTTATAA
* * ****
57919654 AATTACCGTTTTACCCCTGATTTACATAATTATCGTTTTACCCTCGACTTACAGAATTACCGTTT
1 AATTACCGTTTTACCCCTGATTTACAGAATTATCGTTTTACCCTCGACTTACAAAATTACCAAAA
*
57919719 TACCCTCGATTTATAG
66 TACCCTCGATTTATAA
* * * * *
57919735 AATTACTGTTTTACCCTTGATTTATAGAATTA-CTGTTTTACCCTCGATTTACAAAATTACTAAA
1 AATTACCGTTTTACCCCTGATTTACAGAATTATC-GTTTTACCCTCGACTTACAAAATTACCAAA
* * *
57919799 ATACCCTTGGTTTGTAA
65 ATACCCTCGATTTATAA
57919816 AATTACC
1 AATTACC
57919823 AAAATACCTC
Statistics
Matches: 147, Mismatches: 21, Indels: 2
0.86 0.12 0.01
Matches are distributed among these distances:
80 1 0.01
81 146 0.99
ACGTcount: A:0.29, C:0.23, G:0.08, T:0.40
Consensus pattern (81 bp):
AATTACCGTTTTACCCCTGATTTACAGAATTATCGTTTTACCCTCGACTTACAAAATTACCAAAA
TACCCTCGATTTATAA
Found at i:57919845 original size:54 final size:54
Alignment explanation
Indices: 57919787--57919912 Score: 200
Period size: 54 Copynumber: 2.3 Consensus size: 54
57919777 CTCGATTTAC
* *
57919787 AAAATTACTAAAATACCCTTGGTTTGTAAAATTACCAAAATA-CCTCTAGTTTGT
1 AAAATTACCAAAATACCCTTGGTTTGTAAAATTACCAAAATACCCT-TAATTTGT
* *
57919841 AAAATTACCAAAATACCCTTGGTTTGTGAAATTACCGAAATACCCTTAATTTGT
1 AAAATTACCAAAATACCCTTGGTTTGTAAAATTACCAAAATACCCTTAATTTGT
57919895 AAAATTACCAAAATACCC
1 AAAATTACCAAAATACCC
57919913 CTGATTTACA
Statistics
Matches: 67, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
54 64 0.96
55 3 0.04
ACGTcount: A:0.40, C:0.19, G:0.09, T:0.32
Consensus pattern (54 bp):
AAAATTACCAAAATACCCTTGGTTTGTAAAATTACCAAAATACCCTTAATTTGT
Found at i:57919935 original size:54 final size:53
Alignment explanation
Indices: 57919787--57919994 Score: 181
Period size: 54 Copynumber: 3.8 Consensus size: 53
57919777 CTCGATTTAC
* *
57919787 AAAATTACTAAAATACCCTTGGTTTGTA-AAATTACCA-AAATA-CCTCTAGTTTGT
1 AAAATTACCAAAATACCCTTGG-TT-TACAAATTA-CAGAAATACCCT-TAATTTGT
** *
57919841 AAAATTACCAAAATACCCTTGGTTTGTGAAATTACCGAAATACCCTTAATTTGT
1 AAAATTACCAAAATACCCTTGGTTT-ACAAATTACAGAAATACCCTTAATTTGT
* * * *
57919895 AAAATTACCAAAATACCCCTGATTTACAAAGTTACAGAAATACCCTTGACTTTTT
1 AAAATTACCAAAATACCCTTGGTTTACAAA-TTACAGAAATACCCTT-AATTTGT
* * * *
57919950 AAAAATTA-TAGAAGTACCATTGGTTTACAAAATTACTGAAATACC
1 -AAAATTACCA-AAATACCCTTGGTTTAC-AAATTACAGAAATACC
57919995 TTTGGTTTGT
Statistics
Matches: 128, Mismatches: 17, Indels: 16
0.80 0.11 0.10
Matches are distributed among these distances:
52 1 0.01
53 6 0.05
54 77 0.60
55 9 0.07
56 32 0.25
57 3 0.02
ACGTcount: A:0.40, C:0.18, G:0.10, T:0.32
Consensus pattern (53 bp):
AAAATTACCAAAATACCCTTGGTTTACAAATTACAGAAATACCCTTAATTTGT
Found at i:57919936 original size:81 final size:81
Alignment explanation
Indices: 57919788--57919942 Score: 208
Period size: 81 Copynumber: 1.9 Consensus size: 81
57919778 TCGATTTACA
* ** * *
57919788 AAATTACTAAAATACCCTTGGTTTGTAAAATTACCAAAATACCTCTAGTTTGTAAAATTACCAAA
1 AAATTACCAAAATACCCTTAATTTGTAAAATTACCAAAATACCCCTAGATTGTAAAATTACCAAA
57919853 ATACCCTTGGTTTGTG
66 ATACCCTTGGTTTGTG
*
57919869 AAATTACCGAAATACCCTTAATTTGTAAAATTACCAAAATACCCCT-GATT-TACAAAGTTA-CA
1 AAATTACCAAAATACCCTTAATTTGTAAAATTACCAAAATACCCCTAGATTGTA-AAA-TTACCA
57919931 GAAATACCCTTG
64 -AAATACCCTTG
57919943 ACTTTTTAAA
Statistics
Matches: 65, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
79 2 0.03
80 8 0.12
81 55 0.85
ACGTcount: A:0.39, C:0.19, G:0.10, T:0.32
Consensus pattern (81 bp):
AAATTACCAAAATACCCTTAATTTGTAAAATTACCAAAATACCCCTAGATTGTAAAATTACCAAA
ATACCCTTGGTTTGTG
Found at i:57920120 original size:27 final size:27
Alignment explanation
Indices: 57920056--57920120 Score: 78
Period size: 27 Copynumber: 2.4 Consensus size: 27
57920046 ACCCCTAAAA
**
57920056 GGTAAAAAAACCGTAAAGCCCCTGTAG
1 GGTAAAATGACCGTAAAGCCCCTGTAG
* *
57920083 GGTAAAGTGACCGTAATA-CCCCTGTAT
1 GGTAAAATGACCGTAA-AGCCCCTGTAG
57920110 GGTAAAATGAC
1 GGTAAAATGAC
57920121 GAATATGCCC
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
27 31 0.97
28 1 0.03
ACGTcount: A:0.37, C:0.20, G:0.23, T:0.20
Consensus pattern (27 bp):
GGTAAAATGACCGTAAAGCCCCTGTAG
Found at i:57921392 original size:20 final size:20
Alignment explanation
Indices: 57921369--57921452 Score: 150
Period size: 20 Copynumber: 4.2 Consensus size: 20
57921359 TAAACATGGT
57921369 ATGTATGATATGCACATGAC
1 ATGTATGATATGCACATGAC
*
57921389 ATGTATGATATGCACATGAT
1 ATGTATGATATGCACATGAC
57921409 ATGTATGATATGCACATGAC
1 ATGTATGATATGCACATGAC
*
57921429 ATGTATGATATGCACATGAG
1 ATGTATGATATGCACATGAC
57921449 ATGT
1 ATGT
57921453 TCATAAATGC
Statistics
Matches: 61, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 61 1.00
ACGTcount: A:0.35, C:0.12, G:0.21, T:0.32
Consensus pattern (20 bp):
ATGTATGATATGCACATGAC
Found at i:57921409 original size:11 final size:11
Alignment explanation
Indices: 57921373--57921447 Score: 63
Period size: 11 Copynumber: 7.4 Consensus size: 11
57921363 CATGGTATGT
57921373 ATGATATGCAC
1 ATGATATGCAC
* *
57921384 ATGACATG--T
1 ATGATATGCAC
57921393 ATGATATGCAC
1 ATGATATGCAC
*
57921404 ATGATATG--T
1 ATGATATGCAC
57921413 ATGATATGCAC
1 ATGATATGCAC
* *
57921424 ATGACATG--T
1 ATGATATGCAC
57921433 ATGATATGCAC
1 ATGATATGCAC
57921444 ATGA
1 ATGA
57921448 GATGTTCATA
Statistics
Matches: 48, Mismatches: 10, Indels: 12
0.69 0.14 0.17
Matches are distributed among these distances:
9 22 0.46
11 26 0.54
ACGTcount: A:0.36, C:0.13, G:0.20, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:57921555 original size:24 final size:24
Alignment explanation
Indices: 57921499--57921640 Score: 191
Period size: 24 Copynumber: 6.0 Consensus size: 24
57921489 GAGGAAGTGA
*
57921499 AAAATGGCTTATGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
*
57921522 TAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
57921546 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
*
57921570 -AAAGGGCTTATGCCCCAGTTATA
1 AAAAGGGCTTATGCCCCAGTTATC
* *
57921593 AAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
*
57921617 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
57921641 ATGATAAAGC
Statistics
Matches: 107, Mismatches: 8, Indels: 6
0.88 0.07 0.05
Matches are distributed among these distances:
23 43 0.40
24 53 0.50
25 11 0.10
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:57921574 original size:47 final size:47
Alignment explanation
Indices: 57921498--57921641 Score: 200
Period size: 47 Copynumber: 3.0 Consensus size: 47
57921488 GGAGGAAGTG
* *
57921498 AAAAATGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
1 AAAAAGGGCTTATGCCCCAGTTATCAAAGGGCTTATGCCCCAGTTAT
*
57921545 CAAAAGGGCTTATGCCCCAGTTATCAAAGGGCTTATGCCCCAGTTAT
1 AAAAAGGGCTTATGCCCCAGTTATCAAAGGGCTTATGCCCCAGTTAT
* * *
57921592 AAAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAAGGGCTTATGCCCCAGTTA-TCAAAG-GGCTTATGCC-CCAGTTAT
57921641 A
1 A
57921642 TGATAAAGCA
Statistics
Matches: 87, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
47 65 0.75
48 10 0.11
49 12 0.14
ACGTcount: A:0.30, C:0.22, G:0.21, T:0.27
Consensus pattern (47 bp):
AAAAAGGGCTTATGCCCCAGTTATCAAAGGGCTTATGCCCCAGTTAT
Found at i:57923431 original size:40 final size:40
Alignment explanation
Indices: 57923259--57923424 Score: 262
Period size: 40 Copynumber: 4.2 Consensus size: 40
57923249 AACCCAAGTA
* *
57923259 CCTTCGGGATTTAG-CCGGATATAGCAACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
* *
57923298 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
* *
57923338 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACGAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
*
57923378 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
57923418 CCTTCGG
1 CCTTCGG
57923425 ATCTTAGTCC
Statistics
Matches: 117, Mismatches: 9, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 13 0.11
40 104 0.89
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
Found at i:57929114 original size:64 final size:64
Alignment explanation
Indices: 57928966--57929217 Score: 190
Period size: 68 Copynumber: 3.8 Consensus size: 64
57928956 TACAGATGGT
* ** * * *
57928966 ATGTAGCTAGGTCACATGTATGGTGCTGA-GTGCACATCATGT-GTACAAGAGAGCTACGAGACA
1 ATGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAGCTACGAG--A
*
57929029 TTATG
62 -TA-A
* ** * *
57929034 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGATTTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * *
57929098 ATGTAGCTAGATCGCATGCGTGGTTCTAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
57929163 AA
63 AA
* * *
57929165 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAG-ACAAGAGAGC
57929218 CAAAATTATG
Statistics
Matches: 148, Mismatches: 29, Indels: 19
0.76 0.15 0.10
Matches are distributed among these distances:
62 1 0.01
63 19 0.13
64 25 0.17
65 2 0.01
66 22 0.15
67 30 0.20
68 48 0.32
69 1 0.01
ACGTcount: A:0.30, C:0.16, G:0.29, T:0.25
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:57931915 original size:44 final size:42
Alignment explanation
Indices: 57931857--57932021 Score: 142
Period size: 43 Copynumber: 3.9 Consensus size: 42
57931847 TTTTGATATG
*
57931857 TGATTT-CGTGTAAGACCACGTCTGGGACGTTGGCATCGATT
1 TGATTTACATGTAAGACCACGTCTGGGACGTTGGCATCGATT
* * *
57931898 TGAGATTTACATGTAAGACCATGTCTGGGACATCGGCATCGTATT
1 T--GATTTACATGTAAGACCACGTCTGGGACGTTGGCATCG-ATT
** * *
57931943 TGATTT-TGTGTAAGACC-CTGTTTGGGATAG-TGGCATCGATACT
1 TGATTTACATGTAAGACCAC-GTCTGGGA-CGTTGGCATCGAT--T
* *
57931986 TGA-TTACATGTAACACCACGTCTGGAACGTTGGCAT
1 TGATTTACATGTAAGACCACGTCTGGGACGTTGGCAT
57932022 TGTACAAGCT
Statistics
Matches: 96, Mismatches: 17, Indels: 20
0.72 0.13 0.15
Matches are distributed among these distances:
41 3 0.03
42 26 0.27
43 34 0.35
44 29 0.30
45 4 0.04
ACGTcount: A:0.24, C:0.18, G:0.26, T:0.32
Consensus pattern (42 bp):
TGATTTACATGTAAGACCACGTCTGGGACGTTGGCATCGATT
Found at i:57931969 original size:42 final size:41
Alignment explanation
Indices: 57931857--57931982 Score: 121
Period size: 44 Copynumber: 3.0 Consensus size: 41
57931847 TTTTGATATG
* *
57931857 TGATTTCGTGTAAGACCAC-GTCTGGGACGTTGGCATCGATT
1 TGATTTCGTGTAAGACC-CTGTCTGGGACATCGGCATCGATT
* *
57931898 TGAGATTTACATGTAAGACCATGTCTGGGACATCGGCATCGTATT
1 T--GATTT-CGTGTAAGACCCTGTCTGGGACATCGGCATCG-ATT
* * *
57931943 TGATTTTGTGTAAGACCCTGTTTGGGATAGT-GGCATCGAT
1 TGATTTCGTGTAAGACCCTGTCTGGGACA-TCGGCATCGAT
57931983 ACTTGATTAC
Statistics
Matches: 70, Mismatches: 9, Indels: 12
0.77 0.10 0.13
Matches are distributed among these distances:
41 3 0.04
42 25 0.36
43 11 0.16
44 27 0.39
45 4 0.06
ACGTcount: A:0.22, C:0.17, G:0.28, T:0.33
Consensus pattern (41 bp):
TGATTTCGTGTAAGACCCTGTCTGGGACATCGGCATCGATT
Found at i:57944530 original size:46 final size:46
Alignment explanation
Indices: 57944480--57944655 Score: 180
Period size: 46 Copynumber: 3.8 Consensus size: 46
57944470 TGGTTGAGCA
*
57944480 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * *
57944526 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* * *
57944573 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* **
57944619 -CCTGAGCTCGTTGAGTTGAGTCCGAGTTTGCTTATGG
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
57944656 GCGGGTTACA
Statistics
Matches: 108, Mismatches: 14, Indels: 16
0.78 0.10 0.12
Matches are distributed among these distances:
43 6 0.06
45 5 0.05
46 61 0.56
47 28 0.26
48 3 0.03
50 5 0.05
ACGTcount: A:0.20, C:0.19, G:0.30, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:57944636 original size:93 final size:93
Alignment explanation
Indices: 57944477--57944646 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
57944467 GGATGGTTGA
*
57944477 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCCGAACTCGTTGAGT
57944542 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * * *
57944570 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACG-CCTGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCC-GAACTCGTTGAG
57944634 TTGAGTCCGAGTT
65 TTGAGTCCGAGTT
57944647 TGCTTATGGG
Statistics
Matches: 71, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
92 2 0.03
93 69 0.97
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:57946272 original size:85 final size:85
Alignment explanation
Indices: 57946166--57946338 Score: 321
Period size: 85 Copynumber: 2.0 Consensus size: 85
57946156 TCAACTTGCC
57946166 TTTTCAGCCAAATCTCAGAATCTTCTTCCATGGTGACACCTTCAAGAACACTTTATCACCCACCT
1 TTTTCAGCCAAATCTCAGAATCTTCTTCCATGGTGACACCTTCAAGAACACTTTATCACCCACCT
57946231 GAAATTCAATCTC-TTTTCTT
66 GAAATTCAATC-CATTTTCTT
*
57946251 TTTTCGGCCAAATCTCAGAATCTTCTTCCATGGTGACACCTTCAAGAACACTTTATCACCCACCT
1 TTTTCAGCCAAATCTCAGAATCTTCTTCCATGGTGACACCTTCAAGAACACTTTATCACCCACCT
57946316 GAAATTCAATCCATTTTCTT
66 GAAATTCAATCCATTTTCTT
57946336 TTT
1 TTT
57946339 AAATCTACAT
Statistics
Matches: 86, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
84 1 0.01
85 85 0.99
ACGTcount: A:0.27, C:0.29, G:0.09, T:0.36
Consensus pattern (85 bp):
TTTTCAGCCAAATCTCAGAATCTTCTTCCATGGTGACACCTTCAAGAACACTTTATCACCCACCT
GAAATTCAATCCATTTTCTT
Found at i:57953575 original size:25 final size:26
Alignment explanation
Indices: 57953519--57953576 Score: 75
Period size: 29 Copynumber: 2.2 Consensus size: 26
57953509 CCGAAATTCT
57953519 GATA-TCATGGCCCGAAGCCAAATCAACC
1 GATATTCATGGCCCGAAGCCAAAT--A-C
57953547 GATATTCATGGCCCGAAGCCAAAT-C
1 GATATTCATGGCCCGAAGCCAAATAC
57953572 GATAT
1 GATAT
57953577 AACTCGCACC
Statistics
Matches: 29, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
25 6 0.21
28 4 0.14
29 19 0.66
ACGTcount: A:0.34, C:0.28, G:0.19, T:0.19
Consensus pattern (26 bp):
GATATTCATGGCCCGAAGCCAAATAC
Found at i:57958720 original size:31 final size:31
Alignment explanation
Indices: 57958684--57958745 Score: 97
Period size: 31 Copynumber: 2.0 Consensus size: 31
57958674 ATTTTTAAAA
*
57958684 GAACCAATTTACTTAATATCAAAATTGAGAG
1 GAACCAATTTACTCAATATCAAAATTGAGAG
* *
57958715 GAACCAATTTGCTCAATTTCAAAATTGAGAG
1 GAACCAATTTACTCAATATCAAAATTGAGAG
57958746 AGTTAAGAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.42, C:0.15, G:0.15, T:0.29
Consensus pattern (31 bp):
GAACCAATTTACTCAATATCAAAATTGAGAG
Found at i:57959196 original size:18 final size:21
Alignment explanation
Indices: 57959161--57959203 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 21
57959151 CAATTTTATC
57959161 TAAAAAATTATATAAAAAT-A
1 TAAAAAATTATATAAAAATAA
*
57959181 TAAAACATTAT-T-AAAATAA
1 TAAAAAATTATATAAAAATAA
57959200 TAAA
1 TAAA
57959204 TTAATAAAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
18 5 0.24
19 6 0.29
20 10 0.48
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.30
Consensus pattern (21 bp):
TAAAAAATTATATAAAAATAA
Found at i:57960453 original size:17 final size:17
Alignment explanation
Indices: 57960431--57960464 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
57960421 AAGATTGTCC
*
57960431 AAAAATGGCAGAGAATA
1 AAAAATGACAGAGAATA
57960448 AAAAATGACAGAGAATA
1 AAAAATGACAGAGAATA
57960465 TTGTAGGACA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.62, C:0.06, G:0.21, T:0.12
Consensus pattern (17 bp):
AAAAATGACAGAGAATA
Found at i:57962562 original size:13 final size:13
Alignment explanation
Indices: 57962544--57962573 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
57962534 TAAACAGGCC
57962544 ATGTGATATGGTT
1 ATGTGATATGGTT
57962557 ATGTGATATGGTT
1 ATGTGATATGGTT
57962570 ATGT
1 ATGT
57962574 TACGAGTTAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.23, C:0.00, G:0.30, T:0.47
Consensus pattern (13 bp):
ATGTGATATGGTT
Found at i:57962619 original size:42 final size:42
Alignment explanation
Indices: 57962560--57962643 Score: 134
Period size: 42 Copynumber: 2.0 Consensus size: 42
57962550 TATGGTTATG
*
57962560 TGATATGGTTATGTTACGAGTTAGTAC-AGTTATGTACGAAAA
1 TGATATGGTTATGTTACGAGTTAGTACAAG-TATGTACAAAAA
*
57962602 TGATATGGTTATGTTACGAGTTGGTACAAGTATGTACAAAAA
1 TGATATGGTTATGTTACGAGTTAGTACAAGTATGTACAAAAA
57962644 ATTCATAAGT
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
42 37 0.95
43 2 0.05
ACGTcount: A:0.35, C:0.07, G:0.24, T:0.35
Consensus pattern (42 bp):
TGATATGGTTATGTTACGAGTTAGTACAAGTATGTACAAAAA
Found at i:57964811 original size:21 final size:19
Alignment explanation
Indices: 57964765--57964816 Score: 86
Period size: 19 Copynumber: 2.7 Consensus size: 19
57964755 GTAAGCATAG
*
57964765 GGACACACCTGTGTGCGCA
1 GGACACACCCGTGTGCGCA
57964784 GGACACACCCGTGTGCGCA
1 GGACACACCCGTGTGCGCA
*
57964803 GGACACACACGTGT
1 GGACACACCCGTGT
57964817 CCTCAGCCCG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 31 1.00
ACGTcount: A:0.23, C:0.33, G:0.31, T:0.13
Consensus pattern (19 bp):
GGACACACCCGTGTGCGCA
Found at i:57967604 original size:20 final size:20
Alignment explanation
Indices: 57967579--57967617 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
57967569 ACAATTTCAA
57967579 TTATTTGAC-ACATTTACAAC
1 TTATTTGACAAC-TTTACAAC
*
57967599 TTATTTTACAACTTTACAA
1 TTATTTGACAACTTTACAA
57967618 AATAGCCCTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 15 0.88
21 2 0.12
ACGTcount: A:0.36, C:0.18, G:0.03, T:0.44
Consensus pattern (20 bp):
TTATTTGACAACTTTACAAC
Found at i:57979207 original size:6 final size:6
Alignment explanation
Indices: 57979186--57979231 Score: 56
Period size: 6 Copynumber: 7.5 Consensus size: 6
57979176 GTTTAAAAAC
* * *
57979186 TTTTTA TTTATTA TTTTTA TTTTTA TTTTCA CTTTTA TCTTTA TTT
1 TTTTTA TTT-TTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTT
57979232 ATCTTCGTTA
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
6 27 0.82
7 6 0.18
ACGTcount: A:0.17, C:0.07, G:0.00, T:0.76
Consensus pattern (6 bp):
TTTTTA
Found at i:57979221 original size:18 final size:19
Alignment explanation
Indices: 57979186--57979234 Score: 64
Period size: 18 Copynumber: 2.6 Consensus size: 19
57979176 GTTTAAAAAC
* *
57979186 TTTTTATTTATTATTTTTA
1 TTTTTATTTATCACTTTTA
57979205 TTTTTATTT-TCACTTTTA
1 TTTTTATTTATCACTTTTA
*
57979223 TCTTTATTTATC
1 TTTTTATTTATC
57979235 TTCGTTAAGT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
18 15 0.58
19 11 0.42
ACGTcount: A:0.18, C:0.08, G:0.00, T:0.73
Consensus pattern (19 bp):
TTTTTATTTATCACTTTTA
Found at i:57989435 original size:71 final size:71
Alignment explanation
Indices: 57989351--57989514 Score: 310
Period size: 71 Copynumber: 2.3 Consensus size: 71
57989341 CGATTTGTCT
57989351 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
57989416 CTTTCA
66 CTTTCA
* *
57989422 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
57989487 CTTTCA
66 CTTTCA
57989493 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
57989515 GATACATCTC
Statistics
Matches: 91, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
71 91 1.00
ACGTcount: A:0.19, C:0.29, G:0.18, T:0.34
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
CTTTCA
Found at i:57989552 original size:71 final size:70
Alignment explanation
Indices: 57989351--57989548 Score: 249
Period size: 71 Copynumber: 2.8 Consensus size: 70
57989341 CGATTTGTCT
* * * * *
57989351 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
57989416 CTTTCA
65 CTTTCA
* * * *
57989422 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
57989487 CTTTCA
65 CTTTCA
* *
57989493 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
57989549 TACAGGGTGT
Statistics
Matches: 118, Mismatches: 8, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
68 22 0.19
69 1 0.01
70 1 0.01
71 94 0.80
ACGTcount: A:0.21, C:0.29, G:0.18, T:0.33
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:57996936 original size:66 final size:68
Alignment explanation
Indices: 57996858--57997044 Score: 281
Period size: 71 Copynumber: 2.7 Consensus size: 68
57996848 TAGTACCACT
*
57996858 CATGCGACCTAGC-CGATTTGTC-T-CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
57996920 CACG
65 CACG
57996924 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
57996989 ATCACG
63 ATCACG
57996995 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGG
57997045 GATACATCTC
Statistics
Matches: 114, Mismatches: 1, Indels: 7
0.93 0.01 0.06
Matches are distributed among these distances:
66 13 0.11
67 6 0.05
68 1 0.01
69 1 0.01
71 93 0.82
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (68 bp):
CATGCGACCTAGCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC
ACG
Found at i:57996969 original size:71 final size:71
Alignment explanation
Indices: 57996881--57997044 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
57996871 CGATTTGTCT
57996881 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
57996946 CTTTCA
66 CTTTCA
57996952 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
57997017 CTTTCA
66 CTTTCA
57997023 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
57997045 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:57997082 original size:71 final size:70
Alignment explanation
Indices: 57996881--57997078 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
57996871 CGATTTGTCT
* * * *
57996881 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
57996946 CTTTCA
65 CTTTCA
* * * *
57996952 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
57997017 CTTTCA
65 CTTTCA
* *
57997023 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
57997079 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:58001622 original size:66 final size:68
Alignment explanation
Indices: 58001546--58001732 Score: 281
Period size: 71 Copynumber: 2.7 Consensus size: 68
58001536 TAGTACCACT
*
58001546 CATGCGACCTAGC-CGATTTGTC-T-CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
58001608 CACG
65 CACG
58001612 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
58001677 ATCACG
63 ATCACG
58001683 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGG
58001733 GATACATCTC
Statistics
Matches: 114, Mismatches: 1, Indels: 7
0.93 0.01 0.06
Matches are distributed among these distances:
66 13 0.11
67 6 0.05
68 1 0.01
69 1 0.01
71 93 0.82
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (68 bp):
CATGCGACCTAGCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC
ACG
Found at i:58001657 original size:71 final size:71
Alignment explanation
Indices: 58001569--58001732 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
58001559 CGATTTGTCT
58001569 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
58001634 CTTTCA
66 CTTTCA
58001640 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
58001705 CTTTCA
66 CTTTCA
58001711 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
58001733 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:58001770 original size:71 final size:70
Alignment explanation
Indices: 58001569--58001766 Score: 276
Period size: 71 Copynumber: 2.8 Consensus size: 70
58001559 CGATTTGTCT
* * *
58001569 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
58001634 CTTTCA
65 CTTTCA
* * *
58001640 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
58001705 CTTTCA
65 CTTTCA
* *
58001711 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACGCATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACGCATGCGACCTAGCTAC
58001767 TACAGGGTGT
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 23 0.19
69 1 0.01
70 1 0.01
71 96 0.79
ACGTcount: A:0.20, C:0.28, G:0.18, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACGCATGCGACCTAGCTACATTTATC
TTTCA
Found at i:58009189 original size:66 final size:68
Alignment explanation
Indices: 58009113--58009299 Score: 281
Period size: 71 Copynumber: 2.7 Consensus size: 68
58009103 TAGTACCACT
*
58009113 CATGCGACCTAGC-CGATTTGTC-T-CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
58009175 CACG
65 CACG
58009179 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
58009244 ATCACG
63 ATCACG
58009250 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGG
58009300 GATACATCTC
Statistics
Matches: 114, Mismatches: 1, Indels: 7
0.93 0.01 0.06
Matches are distributed among these distances:
66 13 0.11
67 6 0.05
68 1 0.01
69 1 0.01
71 93 0.82
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (68 bp):
CATGCGACCTAGCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC
ACG
Found at i:58009224 original size:71 final size:71
Alignment explanation
Indices: 58009136--58009299 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
58009126 CGATTTGTCT
58009136 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
58009201 CTTTCA
66 CTTTCA
58009207 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
58009272 CTTTCA
66 CTTTCA
58009278 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
58009300 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:58009337 original size:71 final size:70
Alignment explanation
Indices: 58009136--58009333 Score: 276
Period size: 71 Copynumber: 2.8 Consensus size: 70
58009126 CGATTTGTCT
* * *
58009136 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
58009201 CTTTCA
65 CTTTCA
* * *
58009207 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
58009272 CTTTCA
65 CTTTCA
* *
58009278 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACGCATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACGCATGCGACCTAGCTAC
58009334 TACAGGGTGT
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 23 0.19
69 1 0.01
70 1 0.01
71 96 0.79
ACGTcount: A:0.20, C:0.28, G:0.18, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACGCATGCGACCTAGCTACATTTATC
TTTCA
Found at i:58021202 original size:13 final size:12
Alignment explanation
Indices: 58021184--58021222 Score: 51
Period size: 13 Copynumber: 3.0 Consensus size: 12
58021174 CCATGAGCAT
58021184 TTCTTTTCCTTTA
1 TTCTTTT-CTTTA
58021197 TTCTTTTCTTTA
1 TTCTTTTCTTTA
58021209 TATCTTTTTCTTTA
1 T-TC-TTTTCTTTA
58021223 ACATTGTATC
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
12 6 0.25
13 9 0.38
14 9 0.38
ACGTcount: A:0.10, C:0.18, G:0.00, T:0.72
Consensus pattern (12 bp):
TTCTTTTCTTTA
Found at i:58021219 original size:14 final size:13
Alignment explanation
Indices: 58021184--58021222 Score: 53
Period size: 12 Copynumber: 3.0 Consensus size: 13
58021174 CCATGAGCAT
*
58021184 TTCTTTTCCTTTA
1 TTCTTTTTCTTTA
58021197 TTC-TTTTCTTTA
1 TTCTTTTTCTTTA
58021209 TATCTTTTTCTTTA
1 T-TCTTTTTCTTTA
58021223 ACATTGTATC
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
12 9 0.39
13 5 0.22
14 9 0.39
ACGTcount: A:0.10, C:0.18, G:0.00, T:0.72
Consensus pattern (13 bp):
TTCTTTTTCTTTA
Found at i:58022510 original size:23 final size:23
Alignment explanation
Indices: 58022484--58022533 Score: 64
Period size: 23 Copynumber: 2.2 Consensus size: 23
58022474 ACCACATTGG
*
58022484 TAAGGCTACATATTCATACATCA
1 TAAGGATACATATTCATACATCA
* * *
58022507 TAAGTATAGATATTTATACATCA
1 TAAGGATACATATTCATACATCA
58022530 TAAG
1 TAAG
58022534 TATAGACCTA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.42, C:0.14, G:0.10, T:0.34
Consensus pattern (23 bp):
TAAGGATACATATTCATACATCA
Found at i:58022534 original size:23 final size:23
Alignment explanation
Indices: 58022493--58022539 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
58022483 GTAAGGCTAC
58022493 ATATTCATACATCATAAGTATAG
1 ATATTCATACATCATAAGTATAG
*
58022516 ATATTTATACATCATAAGTATAG
1 ATATTCATACATCATAAGTATAG
58022539 A
1 A
58022540 CCTATAATCA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.45, C:0.11, G:0.09, T:0.36
Consensus pattern (23 bp):
ATATTCATACATCATAAGTATAG
Found at i:58023520 original size:27 final size:27
Alignment explanation
Indices: 58023418--58023521 Score: 93
Period size: 27 Copynumber: 3.9 Consensus size: 27
58023408 AATACTTTAG
* *
58023418 TTTACCAAATTACTGAAATACCCTCGA
1 TTTACAAAATTACCGAAATACCCTCGA
* **
58023445 CTTGTAAAATTACC-AAAGTACCCTCGA
1 TTTACAAAATTACCGAAA-TACCCTCGA
* ***
58023472 TTTACAGAATTACCGTTTTACCCTCGA
1 TTTACAAAATTACCGAAATACCCTCGA
**
58023499 TTTACAAAATTATTGAAATACCC
1 TTTACAAAATTACCGAAATACCC
58023522 CTGTAGGGTA
Statistics
Matches: 57, Mismatches: 18, Indels: 4
0.72 0.23 0.05
Matches are distributed among these distances:
26 3 0.05
27 54 0.95
ACGTcount: A:0.36, C:0.24, G:0.09, T:0.32
Consensus pattern (27 bp):
TTTACAAAATTACCGAAATACCCTCGA
Found at i:58023536 original size:27 final size:27
Alignment explanation
Indices: 58023506--58023645 Score: 176
Period size: 27 Copynumber: 5.2 Consensus size: 27
58023496 CGATTTACAA
*
58023506 AATTATTGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
*
58023533 AATTACTGAAATACCCCTGTAGGGTTG
1 AATTACTGAAATACCCCTGTAGGGTAG
*
58023560 AATTACTGAAATACCCTTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
58023587 AAATAC-CAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* * * *
58023613 AATTAGC-GAGATACCCTTGTGGGGTAA
1 AATTA-CTGAAATACCCCTGTAGGGTAG
58023640 AATTAC
1 AATTAC
58023646 CATTTTGCCC
Statistics
Matches: 99, Mismatches: 13, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
26 23 0.23
27 76 0.77
ACGTcount: A:0.34, C:0.17, G:0.22, T:0.27
Consensus pattern (27 bp):
AATTACTGAAATACCCCTGTAGGGTAG
Found at i:58023627 original size:53 final size:53
Alignment explanation
Indices: 58023506--58023647 Score: 180
Period size: 53 Copynumber: 2.7 Consensus size: 53
58023496 CGATTTACAA
* * * * *
58023506 AATTATTGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTTG
1 AATTACTGAAATACCCTTGTAGGGTAGAAATAC-CAAATACCCCTGTAGGGTAG
58023560 AATTACTGAAATACCCTTGTAGGGTAGAAATACCAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAGAAATACCAAATACCCCTGTAGGGTAG
* *
58023613 AATTAGC-GAGATACCCTTGTGGGGTA-AAATTACCA
1 AATTA-CTGAAATACCCTTGTAGGGTAGAAA-TACCA
58023648 TTTTGCCCCT
Statistics
Matches: 79, Mismatches: 7, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
52 3 0.04
53 45 0.57
54 31 0.39
ACGTcount: A:0.34, C:0.18, G:0.22, T:0.27
Consensus pattern (53 bp):
AATTACTGAAATACCCTTGTAGGGTAGAAATACCAAATACCCCTGTAGGGTAG
Found at i:58024463 original size:6 final size:6
Alignment explanation
Indices: 58024424--58024539 Score: 69
Period size: 6 Copynumber: 18.8 Consensus size: 6
58024414 TTGCATTCAC
* * *
58024424 ATTCTG ATT-TGG ATTCT- ATTACTTG ATACTG ATTCTG ATTCAG -TCATCTA
1 ATTCTG ATTCT-G ATTCTG ATT-C-TG ATTCTG ATTCTG ATTCTG AT--TCTG
* * *
58024474 ATTCTG ATTCTG ATTTTG ATTCTG ATTCTG -TCACCAG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG
* *
58024523 ATTCTC ATTTTG ATTCT
1 ATTCTG ATTCTG ATTCT
58024540 AGTTTTGATA
Statistics
Matches: 83, Mismatches: 16, Indels: 22
0.69 0.13 0.18
Matches are distributed among these distances:
5 6 0.07
6 66 0.80
7 7 0.08
8 4 0.05
ACGTcount: A:0.21, C:0.17, G:0.14, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:58024494 original size:37 final size:37
Alignment explanation
Indices: 58024453--58024525 Score: 112
Period size: 37 Copynumber: 2.0 Consensus size: 37
58024443 TACTTGATAC
*
58024453 TGATTCTGATTCAGTCATCTA-ATTCTGATTCTGATTT
1 TGATTCTGATTCAGTCA-CCAGATTCTGATTCTGATTT
*
58024490 TGATTCTGATTCTGTCACCAGATTCTGATTCTGATT
1 TGATTCTGATTCAGTCACCAGATTCTGATTCTGATT
58024526 CTCATTTTGA
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
36 2 0.06
37 31 0.94
ACGTcount: A:0.21, C:0.18, G:0.15, T:0.47
Consensus pattern (37 bp):
TGATTCTGATTCAGTCACCAGATTCTGATTCTGATTT
Found at i:58026617 original size:27 final size:27
Alignment explanation
Indices: 58026587--58026695 Score: 155
Period size: 27 Copynumber: 4.0 Consensus size: 27
58026577 CGATTTACAA
*
58026587 AATTATTGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
*
58026614 AATTACTGAAATACCCCTGTAGGGTTG
1 AATTACTGAAATACCCCTGTAGGGTAG
*
58026641 AATTACTGAAATACCCTTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* ** *
58026668 AAATACCAAAATACCCCTTTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
58026695 A
1 A
58026696 CGGATTTGAT
Statistics
Matches: 73, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 73 1.00
ACGTcount: A:0.35, C:0.17, G:0.20, T:0.28
Consensus pattern (27 bp):
AATTACTGAAATACCCCTGTAGGGTAG
Found at i:58027051 original size:22 final size:22
Alignment explanation
Indices: 58027026--58027075 Score: 66
Period size: 22 Copynumber: 2.3 Consensus size: 22
58027016 TGTGGCTTTA
58027026 TGCCAACCT-ACATATGGCTCTG
1 TGCCAACCTGA-ATATGGCTCTG
* *
58027048 TGCCAACCTGATTATGGCTGTG
1 TGCCAACCTGAATATGGCTCTG
58027070 TGCCAA
1 TGCCAA
58027076 ACGTACTTGC
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
22 24 0.96
23 1 0.04
ACGTcount: A:0.22, C:0.28, G:0.22, T:0.28
Consensus pattern (22 bp):
TGCCAACCTGAATATGGCTCTG
Found at i:58027408 original size:6 final size:6
Alignment explanation
Indices: 58027399--58027478 Score: 74
Period size: 6 Copynumber: 13.0 Consensus size: 6
58027389 TTGCATTCAC
* * *
58027399 ATTCTG ATTCTG ATTCTG -TTACCTG ATGCTG ATTCTG ATTCTG -TCACCTA
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG AT--TCTG
*
58027449 ATTCTG ATTCTG ATTCTA ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG
58027479 TCACCTGGTT
Statistics
Matches: 60, Mismatches: 8, Indels: 12
0.75 0.10 0.15
Matches are distributed among these distances:
5 3 0.05
6 50 0.83
7 5 0.08
8 2 0.03
ACGTcount: A:0.19, C:0.20, G:0.15, T:0.46
Consensus pattern (6 bp):
ATTCTG
Found at i:58027430 original size:25 final size:25
Alignment explanation
Indices: 58027402--58027465 Score: 101
Period size: 25 Copynumber: 2.6 Consensus size: 25
58027392 CATTCACATT
* *
58027402 CTGATTCTGATTCTGTTACCTGATG
1 CTGATTCTGATTCTGTCACCTAATG
*
58027427 CTGATTCTGATTCTGTCACCTAATT
1 CTGATTCTGATTCTGTCACCTAATG
58027452 CTGATTCTGATTCT
1 CTGATTCTGATTCT
58027466 AATTCTGATT
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 36 1.00
ACGTcount: A:0.17, C:0.22, G:0.16, T:0.45
Consensus pattern (25 bp):
CTGATTCTGATTCTGTCACCTAATG
Found at i:58027452 original size:19 final size:19
Alignment explanation
Indices: 58027430--58027494 Score: 80
Period size: 19 Copynumber: 3.5 Consensus size: 19
58027420 CCTGATGCTG
58027430 ATTCTGATTCTGTCACCTA
1 ATTCTGATTCTGTCACCTA
*
58027449 ATTCTGATTCTG--ATTCTA
1 ATTCTGATTCTGTCA-CCTA
*
58027467 ATTCTGATTCTGTCACCTG
1 ATTCTGATTCTGTCACCTA
*
58027486 GTTCTGATT
1 ATTCTGATT
58027495 ATGATTCTAG
Statistics
Matches: 39, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
17 1 0.03
18 15 0.38
19 22 0.56
20 1 0.03
ACGTcount: A:0.18, C:0.22, G:0.14, T:0.46
Consensus pattern (19 bp):
ATTCTGATTCTGTCACCTA
Found at i:58027462 original size:37 final size:37
Alignment explanation
Indices: 58027421--58027511 Score: 119
Period size: 37 Copynumber: 2.5 Consensus size: 37
58027411 ATTCTGTTAC
*
58027421 CTGATGCTGATTCTGATTCTGTCACCTAATTCTGATT
1 CTGATGCTAATTCTGATTCTGTCACCTAATTCTGATT
* **
58027458 CTGATTCTAATTCTGATTCTGTCACCTGGTTCTGATT
1 CTGATGCTAATTCTGATTCTGTCACCTAATTCTGATT
* * *
58027495 ATGATTCTAGTTCTGAT
1 CTGATGCTAATTCTGAT
58027512 AATGTTTCTT
Statistics
Matches: 48, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
37 48 1.00
ACGTcount: A:0.19, C:0.20, G:0.16, T:0.45
Consensus pattern (37 bp):
CTGATGCTAATTCTGATTCTGTCACCTAATTCTGATT
Found at i:58027520 original size:18 final size:19
Alignment explanation
Indices: 58027486--58027532 Score: 55
Period size: 18 Copynumber: 2.6 Consensus size: 19
58027476 CTGTCACCTG
*
58027486 GTTCTGATTATGATTC-TA
1 GTTCTGATAATGATTCTTA
*
58027504 GTTCTGATAATGTTTCTTA
1 GTTCTGATAATGATTCTTA
58027523 -TTCT-ATAATG
1 GTTCTGATAATG
58027533 GGCTAAGGCC
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
17 6 0.23
18 18 0.69
19 2 0.08
ACGTcount: A:0.23, C:0.11, G:0.15, T:0.51
Consensus pattern (19 bp):
GTTCTGATAATGATTCTTA
Found at i:58029914 original size:123 final size:123
Alignment explanation
Indices: 58029695--58030033 Score: 597
Period size: 123 Copynumber: 2.8 Consensus size: 123
58029685 GAATTATGTG
*
58029695 AAATGAAATATGGATGTGTAATGATTATTGACATATGTGTGTATGAGTATTTGAATGGTACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
*
58029760 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTTGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
58029818 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
58029883 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
* * * * *
58029941 AAATGAAATATGGATGTGTAATGATTATTGATTTATGTGTGCATGAGCAATTGAATGATACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
* *
58030006 GCTAAGTCCCGAAGACATTTATGCTAGT
66 GCTAAGTCCCGAAGGCAATTATGCTAGT
58030034 AATTATATCC
Statistics
Matches: 207, Mismatches: 9, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
123 207 1.00
ACGTcount: A:0.30, C:0.11, G:0.25, T:0.34
Consensus pattern (123 bp):
AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
Found at i:58030057 original size:40 final size:40
Alignment explanation
Indices: 58030002--58030245 Score: 301
Period size: 40 Copynumber: 6.1 Consensus size: 40
58029992 TGAATGATAC
* * * * **
58030002 CCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATAT
* * * *
58030042 CCGGGTTAAGACCCGAAGGCAATTGTGCTAG-TGACTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTG-TTATAT
*
58030082 CCGGGCTAATACCCGAAGGCATTTGTGCAAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATAT
*
58030122 CCGGGCTAATACCCGAAGGCATTTGTGCAAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATAT
* *
58030162 CCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATAT
* * ** *
58030202 CCGGGCTAAGACCCGAGGGCATTCGTGCGTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATAT
58030242 CCGG
1 CCGG
58030246 TTGTATTCCG
Statistics
Matches: 182, Mismatches: 20, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
40 180 0.99
41 2 0.01
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATAT
Found at i:58037323 original size:123 final size:123
Alignment explanation
Indices: 58037104--58037428 Score: 596
Period size: 123 Copynumber: 2.6 Consensus size: 123
58037094 GAATTATGTG
*
58037104 AAATGAAATATGGATGTGTAATGATTATTGACATATGTGTGTATGAGTATTTGAATGGTACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
58037169 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTTGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTTGAGCCTTAGTAACGA
58037227 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
58037292 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTTGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTTGAGCCTTAGTAACGA
* * * * *
58037350 AAATGAAATATGGATGTGTAATGATTATTGATTTATGTGTGCATGAGCAATTGAATGATACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
58037415 GCTAAGTCCCGAAG
66 GCTAAGTCCCGAAG
58037429 ACATTTATTG
Statistics
Matches: 196, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
123 196 1.00
ACGTcount: A:0.30, C:0.10, G:0.26, T:0.34
Consensus pattern (123 bp):
AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTTGAGCCTTAGTAACGA
Found at i:58038806 original size:41 final size:41
Alignment explanation
Indices: 58038761--58038878 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
58038751 TGAAAGATAA
58038761 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
58038802 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
58038832 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
58038873 ATGTAG
1 ATGTAG
58038879 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:58038817 original size:71 final size:71
Alignment explanation
Indices: 58038729--58038892 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
58038719 GAGATGTATC
58038729 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
58038794 AGGACA
66 AGGACA
58038800 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
58038865 AGGACA
66 AGGACA
58038871 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
58038893 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:58040255 original size:40 final size:40
Alignment explanation
Indices: 58040220--58040413 Score: 291
Period size: 40 Copynumber: 4.8 Consensus size: 40
58040210 ATGCTAGTAA
* * * *
58040220 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAG-TG
1 TTATATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTTG
*
58040259 ACTATATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTTG
1 -TTATATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTTG
58040300 TTATATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTTG
1 TTATATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTTG
*
58040340 TTATATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCG
1 TTATATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTTG
* * *
58040380 TTATATCCGGGCTAAGACCCGAGGGCATTCGTGC
1 TTATATCCGGGCTAATACCCGAAGGCATTTGTGC
58040414 GTGTGGTTAT
Statistics
Matches: 143, Mismatches: 10, Indels: 2
0.92 0.06 0.01
Matches are distributed among these distances:
40 141 0.99
41 2 0.01
ACGTcount: A:0.25, C:0.22, G:0.26, T:0.27
Consensus pattern (40 bp):
TTATATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTTG
Found at i:58042016 original size:44 final size:44
Alignment explanation
Indices: 58041966--58042136 Score: 209
Period size: 44 Copynumber: 3.8 Consensus size: 44
58041956 TATCCATGCT
58041966 GATGCATGTCCCAGACATGTCTTACACTAGCACATC-TCGTAGCC
1 GATGCATGTCCCAGACATGTCTTACACTAGCAC-TCATCGTAGCC
* *
58042010 GATGCATGTCCCAGACATGTCTTACACTAGCTCTCATCTTAATGCC
1 GATGCATGTCCCAGACATGTCTTACACTAGCACTCATCGT-A-GCC
* * * * *
58042056 AATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCC
1 GATG-CATGTCCCAGACAT-GTCTTACACTAGCACTCAT--CGTAGCC
58042104 GATGCATGTCCCAGACATGTCTTACACTAGCAC
1 GATGCATGTCCCAGACATGTCTTACACTAGCAC
58042137 ACACACATCA
Statistics
Matches: 110, Mismatches: 10, Indels: 12
0.83 0.08 0.09
Matches are distributed among these distances:
43 2 0.02
44 35 0.32
45 1 0.01
46 19 0.17
47 28 0.25
48 24 0.22
50 1 0.01
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.27
Consensus pattern (44 bp):
GATGCATGTCCCAGACATGTCTTACACTAGCACTCATCGTAGCC
Found at i:58042126 original size:94 final size:92
Alignment explanation
Indices: 58041921--58042134 Score: 265
Period size: 94 Copynumber: 2.3 Consensus size: 92
58041911 ATGCCAATGC
* * **
58041921 CATGTCCCAGACATGGTCTTACTCTAGCTCTCACATATCCATGCTGATGCATGTCCCAGACATGT
1 CATGTCCCAGACAT-GTCTTACACTAGCTCTCACATATCAATGCCAATGCATGTCCCAGACATGT
58041986 CTTACACTAGCACATCTCGTAGCCGATG
65 CTTACACTAGCACATCTCGTAGCCGATG
58042014 CATGTCCCAGACATGTCTTACACTAGCTCTCATC-T-T-AATGCCAATGCCATGTCCCAGACATG
1 CATGTCCCAGACATGTCTTACACTAGCTCTCA-CATATCAATGCCAATG-CATGTCCCAGACAT-
* * * *
58042076 GTCTTACACTGGCTC-TCATAATGTGGCCGATG
63 GTCTTACACTAGCACATC-T--CGTAGCCGATG
58042108 CATGTCCCAGACATGTCTTACACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
58042135 ACACACACAT
Statistics
Matches: 107, Mismatches: 8, Indels: 11
0.85 0.06 0.09
Matches are distributed among these distances:
90 7 0.07
91 17 0.16
92 32 0.30
93 15 0.14
94 36 0.34
ACGTcount: A:0.24, C:0.31, G:0.17, T:0.28
Consensus pattern (92 bp):
CATGTCCCAGACATGTCTTACACTAGCTCTCACATATCAATGCCAATGCATGTCCCAGACATGTC
TTACACTAGCACATCTCGTAGCCGATG
Found at i:58045446 original size:15 final size:16
Alignment explanation
Indices: 58045426--58045466 Score: 52
Period size: 15 Copynumber: 2.8 Consensus size: 16
58045416 TTATCGACAC
58045426 TTCTTATTGTTT-TTT
1 TTCTTATTGTTTGTTT
58045441 TTCTTATT-TTTGTTT
1 TTCTTATTGTTTGTTT
*
58045456 TTATT-TTGTTT
1 TTCTTATTGTTT
58045467 ACATTATATT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 5 0.22
15 18 0.78
ACGTcount: A:0.07, C:0.05, G:0.07, T:0.80
Consensus pattern (16 bp):
TTCTTATTGTTTGTTT
Found at i:58058533 original size:10 final size:11
Alignment explanation
Indices: 58058509--58058543 Score: 54
Period size: 11 Copynumber: 3.3 Consensus size: 11
58058499 ACCAAGAGTC
*
58058509 AAAAGGAGCCA
1 AAAAGGAGACA
58058520 AAAAGGAGACA
1 AAAAGGAGACA
58058531 AAAAGG-GACA
1 AAAAGGAGACA
58058541 AAA
1 AAA
58058544 CGGACCAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
10 7 0.30
11 16 0.70
ACGTcount: A:0.63, C:0.11, G:0.26, T:0.00
Consensus pattern (11 bp):
AAAAGGAGACA
Found at i:58065976 original size:40 final size:39
Alignment explanation
Indices: 58065921--58066083 Score: 177
Period size: 40 Copynumber: 4.1 Consensus size: 39
58065911 TGAATGATAC
* * *
58065921 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTG-TTATAT
*
58065961 CCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCAATT-GTGCTAG-TGTTATAT
* * *
58066001 CCGGGCTAAGACCCGAAGGCAATTGTGCAAGT-TACCAAAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGT--TATAT
* * *
58066041 CCGGGTTAAGACCCAAAGGCAATTGTGCTTGTGTTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGTTATAT
58066080 CCGG
1 CCGG
58066084 TTAAATCCCG
Statistics
Matches: 104, Mismatches: 13, Indels: 13
0.80 0.10 0.10
Matches are distributed among these distances:
38 1 0.01
39 10 0.10
40 87 0.84
41 6 0.06
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (39 bp):
CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGTTATAT
Found at i:58075217 original size:30 final size:30
Alignment explanation
Indices: 58075183--58075243 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
58075173 TCCTTAACTC
58075183 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
58075213 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
58075243 A
1 A
58075244 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:58082278 original size:45 final size:44
Alignment explanation
Indices: 58082211--58082298 Score: 113
Period size: 45 Copynumber: 2.0 Consensus size: 44
58082201 TATATATACA
* **
58082211 CATCTCATACATATCTCACATTAGCCATTTGCTTTACCACATATC
1 CATCTCATACACATCTCACATTAGCCATCGGC-TTACCACATATC
* * *
58082256 CATCTCATACACGTTTCGCATTAGCCATCGGCTTACCACATAT
1 CATCTCATACACATCTCACATTAGCCATCGGCTTACCACATAT
58082299 ATACACTTCC
Statistics
Matches: 37, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
44 11 0.30
45 26 0.70
ACGTcount: A:0.27, C:0.32, G:0.08, T:0.33
Consensus pattern (44 bp):
CATCTCATACACATCTCACATTAGCCATCGGCTTACCACATATC
Found at i:58082344 original size:47 final size:47
Alignment explanation
Indices: 58082274--58082645 Score: 499
Period size: 47 Copynumber: 8.1 Consensus size: 47
58082264 ACACGTTTCG
* * * * *
58082274 CATTAGCCA-TCGG-CTTACCACATATATACACT-TCCACGTTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCA-TGTTCACATTCATCA
* *
58082319 CATTGGCCATTCTGCCTTATCACATATATACATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
*
58082366 CATTGGCCATTC-GCCTTATCACACATATGCAT-TTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* *
58082411 CATTGGCCATTCGGCCTTATCATACATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
58082458 CATTGGCCATTC-GCCTTATCACATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* * *
58082504 CATTGGCCATTTGGCCTTATCATACATATGCA--TTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
*
58082549 CATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
** * * **
58082596 CATTTTCCATTCGGCCTTATCTCATATATACACATTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
58082643 CAT
1 CAT
58082646 AAAATCCTAA
Statistics
Matches: 297, Mismatches: 22, Indels: 14
0.89 0.07 0.04
Matches are distributed among these distances:
45 74 0.25
46 84 0.28
47 139 0.47
ACGTcount: A:0.27, C:0.29, G:0.10, T:0.35
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
Found at i:58082411 original size:92 final size:93
Alignment explanation
Indices: 58082312--58082645 Score: 503
Period size: 92 Copynumber: 3.6 Consensus size: 93
58082302 CACTTCCACG
* *
58082312 TTCATCACATTGGCCATTCTGCCTTATCACATATATACATGTTCACATTCATCACATTGGCCATT
1 TTCATCACATTGGCCATTCGGCCTTATCACACATATACATGTTCACATTCATCACATTGGCCATT
*
58082377 CGCCTTATCACACATATGCAT-TTCACA
66 CGCCTTATCACATATATGCATGTTCACA
* *
58082404 TTCATCACATTGGCCATTCGGCCTTATCATACATATGCATGTTCACATTCATCACATTGGCCATT
1 TTCATCACATTGGCCATTCGGCCTTATCACACATATACATGTTCACATTCATCACATTGGCCATT
58082469 CGCCTTATCACATATATGCATGTTCACA
66 CGCCTTATCACATATATGCATGTTCACA
* * *
58082497 TTCATCACATTGGCCATTTGGCCTTATCATACATATGCA--TTCACATTCATCACATTGGCCATT
1 TTCATCACATTGGCCATTCGGCCTTATCACACATATACATGTTCACATTCATCACATTGGCCATT
*
58082560 CGGCCTTATCTCATATATGCATGTTCACA
66 C-GCCTTATCACATATATGCATGTTCACA
** * * **
58082589 TTCATCACATTTTCCATTCGGCCTTATCTCATATATACACATTCACATTCATCACAT
1 TTCATCACATTGGCCATTCGGCCTTATCACACATATACATGTTCACATTCATCACAT
58082646 AAAATCCTAA
Statistics
Matches: 224, Mismatches: 14, Indels: 6
0.92 0.06 0.02
Matches are distributed among these distances:
91 25 0.11
92 139 0.62
93 44 0.20
94 16 0.07
ACGTcount: A:0.26, C:0.28, G:0.10, T:0.36
Consensus pattern (93 bp):
TTCATCACATTGGCCATTCGGCCTTATCACACATATACATGTTCACATTCATCACATTGGCCATT
CGCCTTATCACATATATGCATGTTCACA
Found at i:58082491 original size:138 final size:139
Alignment explanation
Indices: 58082312--58082645 Score: 539
Period size: 138 Copynumber: 2.4 Consensus size: 139
58082302 CACTTCCACG
*
58082312 TTCATCACATTGGCCATTCTGCCTTATCACATATATACATGTTCACATTCATCACATTGGCCA-T
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATACATGTTCACATTCATCACATTGGCCATT
58082376 TCGCCTTATCACACATATGCATTTCACATTCATCACATTGGCCATTCGGCCTTATCAT-ACATAT
66 TCGCCTTATCACACATATGCA-TTCACATTCATCACATTGGCCATTCGGCCTTATC-TCACATAT
58082440 GCATGTTCACA
129 GCATGTTCACA
*
58082451 TTCATCACATTGGCCATTC-GCCTTATCACATATATGCATGTTCACATTCATCACATTGGCCATT
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATACATGTTCACATTCATCACATTGGCCATT
* * *
58082515 TGGCCTTATCATACATATGCATTCACATTCATCACATTGGCCATTCGGCCTTATCTCATATATGC
66 TCGCCTTATCACACATATGCATTCACATTCATCACATTGGCCATTCGGCCTTATCTCACATATGC
58082580 ATGTTCACA
131 ATGTTCACA
** * **
58082589 TTCATCACATTTTCCATTCGGCCTTATCTCATATATACACATTCACATTCATCACAT
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATACATGTTCACATTCATCACAT
58082646 AAAATCCTAA
Statistics
Matches: 182, Mismatches: 10, Indels: 6
0.92 0.05 0.03
Matches are distributed among these distances:
137 1 0.01
138 109 0.60
139 72 0.40
ACGTcount: A:0.26, C:0.28, G:0.10, T:0.36
Consensus pattern (139 bp):
TTCATCACATTGGCCATTCGGCCTTATCACATATATACATGTTCACATTCATCACATTGGCCATT
TCGCCTTATCACACATATGCATTCACATTCATCACATTGGCCATTCGGCCTTATCTCACATATGC
ATGTTCACA
Found at i:58087261 original size:7 final size:7
Alignment explanation
Indices: 58087249--58087273 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
58087239 GTTGTCTTCT
58087249 TGTTTGA
1 TGTTTGA
58087256 TGTTTGA
1 TGTTTGA
58087263 TGTTTGA
1 TGTTTGA
58087270 TGTT
1 TGTT
58087274 GTGGTGATGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.12, C:0.00, G:0.28, T:0.60
Consensus pattern (7 bp):
TGTTTGA
Found at i:58088205 original size:27 final size:28
Alignment explanation
Indices: 58088149--58088218 Score: 115
Period size: 27 Copynumber: 2.5 Consensus size: 28
58088139 AAATTTGTAC
58088149 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
* *
58088177 AGCACTAGGTGTGCGAG-TTGATTTTAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
58088204 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
58088219 GACTCACTAT
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
27 23 0.59
28 16 0.41
ACGTcount: A:0.26, C:0.13, G:0.29, T:0.33
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATTATAT
Found at i:58095109 original size:7 final size:7
Alignment explanation
Indices: 58095097--58095121 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
58095087 GTTGTCTTCT
58095097 TGTTTGA
1 TGTTTGA
58095104 TGTTTGA
1 TGTTTGA
58095111 TGTTTGA
1 TGTTTGA
58095118 TGTT
1 TGTT
58095122 GTGGTGATGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.12, C:0.00, G:0.28, T:0.60
Consensus pattern (7 bp):
TGTTTGA
Found at i:58096053 original size:27 final size:28
Alignment explanation
Indices: 58095997--58096066 Score: 115
Period size: 27 Copynumber: 2.5 Consensus size: 28
58095987 AAATTTGTAC
58095997 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
* *
58096025 AGCACTAGGTGTGCGAG-TTGATTTTAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
58096052 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
58096067 GACTCACTAT
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
27 23 0.59
28 16 0.41
ACGTcount: A:0.26, C:0.13, G:0.29, T:0.33
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATTATAT
Found at i:58102988 original size:71 final size:71
Alignment explanation
Indices: 58102904--58103067 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
58102894 CGATTTGTCT
58102904 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
58102969 CTTTCA
66 CTTTCA
58102975 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
58103040 CTTTCA
66 CTTTCA
58103046 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
58103068 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:58103105 original size:71 final size:70
Alignment explanation
Indices: 58102904--58103101 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
58102894 CGATTTGTCT
* * * *
58102904 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
58102969 CTTTCA
65 CTTTCA
* * * *
58102975 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
58103040 CTTTCA
65 CTTTCA
* *
58103046 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
58103102 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:58106005 original size:66 final size:66
Alignment explanation
Indices: 58105883--58106006 Score: 176
Period size: 66 Copynumber: 1.9 Consensus size: 66
58105873 ATTCGGATAG
*
58105883 CTGTCAGGTGCAACGATAATTTTGAACGCAATCTGGAATTAACCCATACAGCGACATTGAAGACT
1 CTGTCAGGTGCAACGATAATTTTGAACGCAATCTGGAATTAACCCATACAACGACATTGAAGACT
58105948 T
66 T
** * * * * *
58105949 CTGTCAGGTGCGGCGATAATTTTGGATGCAATCTGGAATTAACTCATGCAATGACATT
1 CTGTCAGGTGCAACGATAATTTTGAACGCAATCTGGAATTAACCCATACAACGACATT
58106007 AATGCAATAA
Statistics
Matches: 50, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
66 50 1.00
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.28
Consensus pattern (66 bp):
CTGTCAGGTGCAACGATAATTTTGAACGCAATCTGGAATTAACCCATACAACGACATTGAAGACT
T
Found at i:58107400 original size:21 final size:21
Alignment explanation
Indices: 58107375--58107415 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
58107365 TATTTTTAGC
* *
58107375 AACTTCCTCTTCTTCAGCAAT
1 AACTTCATCTTCTGCAGCAAT
58107396 AACTTCATCTTCTGCAGCAA
1 AACTTCATCTTCTGCAGCAA
58107416 CTTTTGCTCC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.27, C:0.32, G:0.07, T:0.34
Consensus pattern (21 bp):
AACTTCATCTTCTGCAGCAAT
Found at i:58110207 original size:27 final size:26
Alignment explanation
Indices: 58110148--58110261 Score: 140
Period size: 27 Copynumber: 4.2 Consensus size: 26
58110138 AGGAAGCATC
*
58110148 CTGGTGGCTATGCCACAAATTATCTGATT
1 CTGGTGGCTCTGCCAC--ATTATCTG-TT
58110177 -TGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGTT
58110203 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTGT-T
* *
58110231 CTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTCTGCCACATTATCTGTT
58110257 CTGGT
1 CTGGT
58110262 AGCCATGCTG
Statistics
Matches: 78, Mismatches: 3, Indels: 11
0.85 0.03 0.12
Matches are distributed among these distances:
26 10 0.13
27 37 0.47
28 31 0.40
ACGTcount: A:0.17, C:0.23, G:0.23, T:0.38
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGTT
Done.